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Sample records for automating groundwater sampling

  1. AUTOMATING GROUNDWATER SAMPLING AT HANFORD

    SciTech Connect

    CONNELL CW; HILDEBRAND RD; CONLEY SF; CUNNINGHAM DE

    2009-01-16

    Until this past October, Fluor Hanford managed Hanford's integrated groundwater program for the U.S. Department of Energy (DOE). With the new contract awards at the Site, however, the CH2M HILL Plateau Remediation Company (CHPRC) has assumed responsibility for the groundwater-monitoring programs at the 586-square-mile reservation in southeastern Washington State. These programs are regulated by the Resource Conservation and Recovery Act (RCRA) and the Comprehensive Environmental Response Compensation and Liability Act (CERCLA). The purpose of monitoring is to track existing groundwater contamination from past practices, as well as other potential contamination that might originate from RCRA treatment, storage, and disposal (TSD) facilities. An integral part of the groundwater-monitoring program involves taking samples of the groundwater and measuring the water levels in wells scattered across the site. More than 1,200 wells are sampled each year. Historically, field personnel or 'samplers' have been issued pre-printed forms that have information about the well(s) for a particular sampling evolution. This information is taken from the Hanford Well Information System (HWIS) and the Hanford Environmental Information System (HEIS)--official electronic databases. The samplers used these hardcopy forms to document the groundwater samples and well water-levels. After recording the entries in the field, the samplers turned the forms in at the end of the day and the collected information was posted onto a spreadsheet that was then printed and included in a log book. The log book was then used to make manual entries of the new information into the software application(s) for the HEIS and HWIS databases. This is a pilot project for automating this tedious process by providing an electronic tool for automating water-level measurements and groundwater field-sampling activities. The automation will eliminate the manual forms and associated data entry, improve the accuracy of the

  2. AUTOMATING GROUNDWATER SAMPLING AT HANFORD THE NEXT STEP

    SciTech Connect

    CONNELL CW; CONLEY SF; HILDEBRAND RD; CUNNINGHAM DE; R_D_Doug_Hildebrand@rl.gov; DeVon_E_Cunningham@rl.gov

    2010-01-21

    Historically, the groundwater monitoring activities at the Department of Energy's Hanford Site in southeastern Washington State have been very "people intensive." Approximately 1500 wells are sampled each year by field personnel or "samplers." These individuals have been issued pre-printed forms showing information about the well(s) for a particular sampling evolution. This information is taken from 2 official electronic databases: the Hanford Well information System (HWIS) and the Hanford Environmental Information System (HEIS). The samplers used these hardcopy forms to document the groundwater samples and well water-levels. After recording the entries in the field, the samplers turned the forms in at the end of the day and other personnel posted the collected information onto a spreadsheet that was then printed and included in a log book. The log book was then used to make manual entries of the new information into the software application(s) for the HEIS and HWIS databases. A pilot project for automating this extremely tedious process was lauched in 2008. Initially, the automation was focused on water-level measurements. Now, the effort is being extended to automate the meta-data associated with collecting groundwater samples. The project allowed electronic forms produced in the field by samplers to be used in a work flow process where the data is transferred to the database and electronic form is filed in managed records - thus eliminating manually completed forms. Elimating the manual forms and streamlining the data entry not only improved the accuracy of the information recorded, but also enhanced the efficiency and sampling capacity of field office personnel.

  3. Automated Groundwater Screening

    SciTech Connect

    Taylor, Glenn A.; Collard, Leonard, B.

    2005-10-31

    The Automated Intruder Analysis has been extended to include an Automated Ground Water Screening option. This option screens 825 radionuclides while rigorously applying the National Council on Radiation Protection (NCRP) methodology. An extension to that methodology is presented to give a more realistic screening factor for those radionuclides which have significant daughters. The extension has the promise of reducing the number of radionuclides which must be tracked by the customer. By combining the Automated Intruder Analysis with the Automated Groundwater Screening a consistent set of assumptions and databases is used. A method is proposed to eliminate trigger values by performing rigorous calculation of the screening factor thereby reducing the number of radionuclides sent to further analysis. Using the same problem definitions as in previous groundwater screenings, the automated groundwater screening found one additional nuclide, Ge-68, which failed the screening. It also found that 18 of the 57 radionuclides contained in NCRP Table 3.1 failed the screening. This report describes the automated groundwater screening computer application.

  4. Automated Ground-Water Sampling and Analysis of Hexavalent Chromium using a “Universal” Sampling/Analytical System

    PubMed Central

    Burge, Scott R.; Hoffman, Dave A.; Hartman, Mary J.; Venedam, Richard J.

    2005-01-01

    The capabilities of a “universal platform” for the deployment of analytical sensors in the field for long-term monitoring of environmental contaminants were expanded in this investigation. The platform was previously used to monitor trichloroethene in monitoring wells and at groundwater treatment systems (1,2). The platform was interfaced with chromium (VI) and conductivity analytical systems to monitor shallow wells installed adjacent to the Columbia River at the 100-D Area of the Hanford Site, Washington. A groundwater plume of hexavalent chromium is discharging into the Columbia River through the gravels beds used by spawning salmon. The sampling/analytical platform was deployed for the purpose of collecting data on subsurface hexavalent chromium concentrations at more frequent intervals than was possible with the previous sampling and analysis methods employed a the Site.

  5. Technology Transfer Opportunities: Automated Ground-Water Monitoring

    USGS Publications Warehouse

    Smith, Kirk P.; Granato, Gregory E.

    1997-01-01

    Introduction A new automated ground-water monitoring system developed by the U.S. Geological Survey (USGS) measures and records values of selected water-quality properties and constituents using protocols approved for manual sampling. Prototypes using the automated process have demonstrated the ability to increase the quantity and quality of data collected and have shown the potential for reducing labor and material costs for ground-water quality data collection. Automation of water-quality monitoring systems in the field, in laboratories, and in industry have increased data density and utility while reducing operating costs. Uses for an automated ground-water monitoring system include, (but are not limited to) monitoring ground-water quality for research, monitoring known or potential contaminant sites, such as near landfills, underground storage tanks, or other facilities where potential contaminants are stored, and as an early warning system monitoring groundwater quality near public water-supply wells.

  6. Automated Factor Slice Sampling.

    PubMed

    Tibbits, Matthew M; Groendyke, Chris; Haran, Murali; Liechty, John C

    2014-01-01

    Markov chain Monte Carlo (MCMC) algorithms offer a very general approach for sampling from arbitrary distributions. However, designing and tuning MCMC algorithms for each new distribution, can be challenging and time consuming. It is particularly difficult to create an efficient sampler when there is strong dependence among the variables in a multivariate distribution. We describe a two-pronged approach for constructing efficient, automated MCMC algorithms: (1) we propose the "factor slice sampler", a generalization of the univariate slice sampler where we treat the selection of a coordinate basis (factors) as an additional tuning parameter, and (2) we develop an approach for automatically selecting tuning parameters in order to construct an efficient factor slice sampler. In addition to automating the factor slice sampler, our tuning approach also applies to the standard univariate slice samplers. We demonstrate the efficiency and general applicability of our automated MCMC algorithm with a number of illustrative examples. PMID:24955002

  7. Automated Factor Slice Sampling

    PubMed Central

    Tibbits, Matthew M.; Groendyke, Chris; Haran, Murali; Liechty, John C.

    2013-01-01

    Markov chain Monte Carlo (MCMC) algorithms offer a very general approach for sampling from arbitrary distributions. However, designing and tuning MCMC algorithms for each new distribution, can be challenging and time consuming. It is particularly difficult to create an efficient sampler when there is strong dependence among the variables in a multivariate distribution. We describe a two-pronged approach for constructing efficient, automated MCMC algorithms: (1) we propose the “factor slice sampler”, a generalization of the univariate slice sampler where we treat the selection of a coordinate basis (factors) as an additional tuning parameter, and (2) we develop an approach for automatically selecting tuning parameters in order to construct an efficient factor slice sampler. In addition to automating the factor slice sampler, our tuning approach also applies to the standard univariate slice samplers. We demonstrate the efficiency and general applicability of our automated MCMC algorithm with a number of illustrative examples. PMID:24955002

  8. SAMPLING TUBING EFFECTS ON GROUNDWATER SAMPLES

    EPA Science Inventory

    Volatile organic compounds pose a challenge to groundwater sampling protocols, since they can be lost as a water sample degasses or lost due to sorption on tubing or pump materials. Laboratory sorption experiments have been conducted with five common flexible tubing materials to ...

  9. Technology Transfer Opportunities: Automated Ground-Water Monitoring, A Proven Technology

    USGS Publications Warehouse

    Smith, Kirk P.; Granato, Gregory E.

    1998-01-01

    Introduction The U.S. Geological Survey (USGS) has developed and tested an automated ground-water monitoring system that measures and records values of selected water-quality properties and constituents using protocols approved for manual sampling. Prototypes using the automated process have demonstrated the ability to increase the quantity and quality of data collected and have shown the potential for reducing labor and material costs for ground-water quality data collection. Automated ground-water monitoring systems can be used to monitor known or potential contaminant sites, such as near landfills, underground storage tanks, or other facilities where potential contaminants are stored, to serve as early warning systems monitoring ground-water quality near public water-supply wells, and for ground-water quality research.

  10. Automated Grammatical Tagging of Child Language Samples.

    ERIC Educational Resources Information Center

    Channell, Ron W.; Johnson, Bonnie W.

    1999-01-01

    This study evaluated the accuracy of automated methods of grammatical categorization ("tagging") of transcribed conversational language samples from 30 normally developing children. On a word-by-word basis, automated accuracy levels averaged 95.1%; accuracy of tagging whole utterances averaged 77.7%. Results suggest that further improvement of…

  11. Vapor port and groundwater sampling well

    DOEpatents

    Hubbell, Joel M.; Wylie, Allan H.

    1996-01-01

    A method and apparatus has been developed for combining groundwater monitoring wells with unsaturated-zone vapor sampling ports. The apparatus allows concurrent monitoring of both the unsaturated and the saturated zone from the same well at contaminated areas. The innovative well design allows for concurrent sampling of groundwater and volatile organic compounds (VOCs) in the vadose (unsaturated) zone from a single well, saving considerable time and money. The sample tubes are banded to the outer well casing during installation of the well casing.

  12. Vapor port and groundwater sampling well

    DOEpatents

    Hubbell, J.M.; Wylie, A.H.

    1996-01-09

    A method and apparatus have been developed for combining groundwater monitoring wells with unsaturated-zone vapor sampling ports. The apparatus allows concurrent monitoring of both the unsaturated and the saturated zone from the same well at contaminated areas. The innovative well design allows for concurrent sampling of groundwater and volatile organic compounds (VOCs) in the vadose (unsaturated) zone from a single well, saving considerable time and money. The sample tubes are banded to the outer well casing during installation of the well casing. 10 figs.

  13. Colloid characterization and quantification in groundwater samples

    SciTech Connect

    K. Stephen Kung

    2000-06-01

    This report describes the work conducted at Los Alamos National Laboratory for studying the groundwater colloids for the Yucca Mountain Project in conjunction with the Hydrologic Resources Management Program (HRMP) and the Underground Test Area (UGTA) Project. Colloidal particle size distributions and total particle concentration in groundwater samples are quantified and characterized. Colloid materials from cavity waters collected near underground nuclear explosion sites by HRMP field sampling personnel at the Nevada Test Site (NTS) were quantified. Selected colloid samples were further characterized by electron microscope to evaluate the colloid shapes, elemental compositions, and mineral phases. The authors have evaluated the colloid size and concentration in the natural groundwater sample that was collected from the ER-20-5 well and stored in a 50-gallon (about 200-liter) barrel for several months. This groundwater sample was studied because HRMP personnel have identified trace levels of radionuclides in the water sample. Colloid results show that even though the water sample had filtered through a series of Millipore filters, high-colloid concentrations were identified in all unfiltered and filtered samples. They had studied the samples that were diluted with distilled water and found that diluted samples contained more colloids than the undiluted ones. These results imply that colloids are probably not stable during the storage conditions. Furthermore, results demonstrate that undesired colloids have been introduced into the samples during the storage, filtration, and dilution processes. They have evaluated possible sources of colloid contamination associated with sample collection, filtrating, storage, and analyses of natural groundwaters. The effects of container types and sample storage time on colloid size distribution and total concentration were studied to evaluate colloid stability by using J13 groundwater. The data suggests that groundwater samples

  14. Automated Groundwater Monitoring of Uranium at the Hanford Site, Washington - 13116

    SciTech Connect

    Burge, Scott R.; O'Hara, Matthew J.

    2013-07-01

    An automated groundwater monitoring system for the detection of uranyl ion in groundwater was deployed at the 300 Area Industrial Complex, Hanford Site, Washington. The research was conducted to determine if at-site, automated monitoring of contaminant movement in the subsurface is a viable alternative to the baseline manual sampling and analytical laboratory assay methods currently employed. The monitoring system used Arsenazo III, a colorimetric chelating compound, for the detection of the uranyl ion. The analytical system had a limit of quantification of approximately 10 parts per billion (ppb, μg/L). The EPA's drinking water maximum contaminant level (MCL) is 30 ppb [1]. In addition to the uranyl ion assay, the system was capable of acquiring temperature, conductivity, and river level data. The system was fully automated and could be operated remotely. The system was capable of collecting water samples from four sampling sources, quantifying the uranyl ion, and periodically performing a calibration of the analytical cell. The system communications were accomplished by way of cellular data link with the information transmitted through the internet. Four water sample sources were selected for the investigation: one location provided samples of Columbia River water, and the remaining three sources provided groundwater from aquifer sampling tubes positioned in a vertical array at the Columbia River shoreline. The typical sampling schedule was to sample the four locations twice per day with one calibration check per day. This paper outlines the instrumentation employed, the operation of the instrumentation, and analytical results for a period of time between July and August, 2012. The presentation includes the uranyl ion concentration and conductivity results from the automated sampling/analysis system, along with a comparison between the automated monitor's analytical performance and an independent laboratory analysis. Benefits of using the automated system as an

  15. Automated storm water sampling on small watersheds

    USGS Publications Warehouse

    Harmel, R.D.; King, K.W.; Slade, R.M.

    2003-01-01

    Few guidelines are currently available to assist in designing appropriate automated storm water sampling strategies for small watersheds. Therefore, guidance is needed to develop strategies that achieve an appropriate balance between accurate characterization of storm water quality and loads and limitations of budget, equipment, and personnel. In this article, we explore the important sampling strategy components (minimum flow threshold, sampling interval, and discrete versus composite sampling) and project-specific considerations (sampling goal, sampling and analysis resources, and watershed characteristics) based on personal experiences and pertinent field and analytical studies. These components and considerations are important in achieving the balance between sampling goals and limitations because they determine how and when samples are taken and the potential sampling error. Several general recommendations are made, including: setting low minimum flow thresholds, using flow-interval or variable time-interval sampling, and using composite sampling to limit the number of samples collected. Guidelines are presented to aid in selection of an appropriate sampling strategy based on user's project-specific considerations. Our experiences suggest these recommendations should allow implementation of a successful sampling strategy for most small watershed sampling projects with common sampling goals.

  16. Precise and automated microfluidic sample preparation.

    SciTech Connect

    Crocker, Robert W.; Patel, Kamlesh D.; Mosier, Bruce P.; Harnett, Cindy K.

    2004-07-01

    Autonomous bio-chemical agent detectors require sample preparation involving multiplex fluid control. We have developed a portable microfluidic pump array for metering sub-microliter volumes at flowrates of 1-100 {micro}L/min. Each pump is composed of an electrokinetic (EK) pump and high-voltage power supply with 15-Hz feedback from flow sensors. The combination of high pump fluid impedance and active control results in precise fluid metering with nanoliter accuracy. Automated sample preparation will be demonstrated by labeling proteins with fluorescamine and subsequent injection to a capillary gel electrophoresis (CGE) chip.

  17. Designing an enhanced groundwater sample collection system

    SciTech Connect

    Schalla, R.

    1994-10-01

    As part of an ongoing technical support mission to achieve excellence and efficiency in environmental restoration activities at the Laboratory for Energy and Health-Related Research (LEHR), Pacific Northwest Laboratory (PNL) provided guidance on the design and construction of monitoring wells and identified the most suitable type of groundwater sampling pump and accessories for monitoring wells. The goal was to utilize a monitoring well design that would allow for hydrologic testing and reduce turbidity to minimize the impact of sampling. The sampling results of the newly designed monitoring wells were clearly superior to those of the previously installed monitoring wells. The new wells exhibited reduced turbidity, in addition to improved access for instrumentation and hydrologic testing. The variable frequency submersible pump was selected as the best choice for obtaining groundwater samples. The literature references are listed at the end of this report. Despite some initial difficulties, the actual performance of the variable frequency, submersible pump and its accessories was effective in reducing sampling time and labor costs, and its ease of use was preferred over the previously used bladder pumps. The surface seals system, called the Dedicator, proved to be useful accessory to prevent surface contamination while providing easy access for water-level measurements and for connecting the pump. Cost savings resulted from the use of the pre-production pumps (beta units) donated by the manufacturer for the demonstration. However, larger savings resulted from shortened field time due to the ease in using the submersible pumps and the surface seal access system. Proper deployment of the monitoring wells also resulted in cost savings and ensured representative samples.

  18. Automated ground-water monitoring with Robowell: case studies and potential applications

    NASA Astrophysics Data System (ADS)

    Granato, Gregory E.; Smith, Kirk P.

    2002-02-01

    Robowell is an automated system and method for monitoring ground-water quality. Robowell meets accepted manual- sampling protocols without high labor and laboratory costs. Robowell periodically monitors and records water-quality properties and constituents in ground water by pumping a well or multilevel sampler until one or more purge criteria have been met. A record of frequent water-quality measurements from a monitoring site can indicate changes in ground-water quality and can provide a context for the interpretation of laboratory data from discrete samples. Robowell also can communicate data and system performance through a remote communication link. Remote access to ground-water data enables the user to monitor conditions and optimize manual sampling efforts. Six Robowell prototypes have successfully monitored ground-water quality during all four seasons of the year under different hydrogeologic conditions, well designs, and geochemical environments. The U.S. Geological Survey is seeking partners for research with robust and economical water-quality monitoring instruments designed to measure contaminants of concern in conjunction with the application and commercialization of the Robowell technology. Project publications and information about technology transfer opportunities are available on the Internet at URL http://ma.water.usgs.gov/automon/

  19. Automated ground-water monitoring with robowell-Case studies and potential applications

    USGS Publications Warehouse

    Granato, G.E.; Smith, K.P.

    2001-01-01

    Robowell is an automated system and method for monitoring ground-water quality. Robowell meets accepted manual-sampling protocols without high labor and laboratory costs. Robowell periodically monitors and records water-quality properties and constituents in ground water by pumping a well or multilevel sampler until one or more purge criteria have been met. A record of frequent water-quality measurements from a monitoring site can indicate changes in ground-water quality and can provide a context for the interpretation of laboratory data from discrete samples. Robowell also can communicate data and system performance through a remote communication link. Remote access to ground-water data enables the user to monitor conditions and optimize manual sampling efforts. Six Robowell prototypes have successfully monitored ground-water quality during all four seasons of the year under different hydrogeologic conditions, well designs, and geochemical environments. The U.S. Geological Survey is seeking partners for research with robust and economical water-quality monitoring instruments designed to measure contaminants of concern in conjunction with the application and commercialization of the Robowell technology. Project publications and information about technology transfer opportunities are available on the Internet at URL http://ma.water.usgs.gov/automon/.

  20. Automated Monitoring System for Waste Disposal Sites and Groundwater

    SciTech Connect

    S. E. Rawlinson

    2003-03-01

    A proposal submitted to the U.S. Department of Energy (DOE), Office of Science and Technology, Accelerated Site Technology Deployment (ASTD) program to deploy an automated monitoring system for waste disposal sites and groundwater, herein referred to as the ''Automated Monitoring System,'' was funded in fiscal year (FY) 2002. This two-year project included three parts: (1) deployment of cellular telephone modems on existing dataloggers, (2) development of a data management system, and (3) development of Internet accessibility. The proposed concept was initially (in FY 2002) to deploy cellular telephone modems on existing dataloggers and partially develop the data management system at the Nevada Test Site (NTS). This initial effort included both Bechtel Nevada (BN) and the Desert Research Institute (DRI). The following year (FY 2003), cellular modems were to be similarly deployed at Sandia National Laboratories (SNL) and Los Alamos National Laboratory (LANL), and the early data management system developed at the NTS was to be brought to those locations for site-specific development and use. Also in FY 2003, additional site-specific development of the complete system was to be conducted at the NTS. To complete the project, certain data, depending on site-specific conditions or restrictions involving distribution of data, were to made available through the Internet via the DRI/Western Region Climate Center (WRCC) WEABASE platform. If the complete project had been implemented, the system schematic would have looked like the figure on the following page.

  1. High throughput sample processing and automated scoring.

    PubMed

    Brunborg, Gunnar; Jackson, Petra; Shaposhnikov, Sergey; Dahl, Hildegunn; Azqueta, Amaya; Collins, Andrew R; Gutzkow, Kristine B

    2014-01-01

    The comet assay is a sensitive and versatile method for assessing DNA damage in cells. In the traditional version of the assay, there are many manual steps involved and few samples can be treated in one experiment. High throughput (HT) modifications have been developed during recent years, and they are reviewed and discussed. These modifications include accelerated scoring of comets; other important elements that have been studied and adapted to HT are cultivation and manipulation of cells or tissues before and after exposure, and freezing of treated samples until comet analysis and scoring. HT methods save time and money but they are useful also for other reasons: large-scale experiments may be performed which are otherwise not practicable (e.g., analysis of many organs from exposed animals, and human biomonitoring studies), and automation gives more uniform sample treatment and less dependence on operator performance. The HT modifications now available vary largely in their versatility, capacity, complexity, and costs. The bottleneck for further increase of throughput appears to be the scoring. PMID:25389434

  2. High throughput sample processing and automated scoring

    PubMed Central

    Brunborg, Gunnar; Jackson, Petra; Shaposhnikov, Sergey; Dahl, Hildegunn; Azqueta, Amaya; Collins, Andrew R.; Gutzkow, Kristine B.

    2014-01-01

    The comet assay is a sensitive and versatile method for assessing DNA damage in cells. In the traditional version of the assay, there are many manual steps involved and few samples can be treated in one experiment. High throughput (HT) modifications have been developed during recent years, and they are reviewed and discussed. These modifications include accelerated scoring of comets; other important elements that have been studied and adapted to HT are cultivation and manipulation of cells or tissues before and after exposure, and freezing of treated samples until comet analysis and scoring. HT methods save time and money but they are useful also for other reasons: large-scale experiments may be performed which are otherwise not practicable (e.g., analysis of many organs from exposed animals, and human biomonitoring studies), and automation gives more uniform sample treatment and less dependence on operator performance. The HT modifications now available vary largely in their versatility, capacity, complexity, and costs. The bottleneck for further increase of throughput appears to be the scoring. PMID:25389434

  3. Expediting Groundwater Sampling at Hanford and Making It Safer - 13158

    SciTech Connect

    Connell, Carl W. Jr.; Conley, S.F.; Carr, Jennifer S.; Schatz, Aaron L.; Brown, W.L.; Hildebrand, R. Douglas

    2013-07-01

    The CH2M HILL Plateau Remediation Company (CHPRC) manages the groundwater monitoring programs at the Department of Energy's 586-square-mile Hanford site in southeastern Washington state. These programs are regulated by the Resource Conservation and Recovery Act (RCRA), the Comprehensive Environmental Response Compensation and Liability Act (CERCLA), and the Atomic Energy Act (AEA). The purpose of monitoring is to track existing groundwater contamination from past practices, as well as other potential contamination that might originate from RCRA treatment, storage, and disposal (TSD) facilities. An integral part of the groundwater-monitoring program involves taking samples of the groundwater and measuring the water levels in wells scattered across the site. Each year, more than 1,500 wells are accessed for a variety of reasons. Historically, the monitoring activities have been very 'people intensive'. Field personnel or 'samplers' have been issued pre-printed forms showing information about the well(s) for a particular sampling evolution. This information is taken from two official electronic databases: the Hanford Well Information System (HWIS) and the Hanford Environmental Information System (HEIS). The samplers traditionally used these hardcopy forms to document the groundwater samples and well water-levels. After recording the entries in the field, the samplers turned the forms in at the end of the day and other personnel posted the collected information. In Automating Groundwater Sampling at Hanford (HNF-38542-FP Revision 0, Presented at Waste Management 2009 Conference, March 1 - March 5, 2009, Phoenix, AZ), we described the methods, tools, and techniques that would be used in automating the activities associated with measuring water levels. The Field Logging and Electronic Data Gathering (FLEDG) application/database that automates collecting the water-level measurement data has now been implemented at Hanford. In addition to eliminating the need to print out

  4. SAMPLING REGIMES AND BACTERIOLOGICAL TESTS FOR COLIFORM DETECTION IN GROUNDWATER

    EPA Science Inventory

    Since conventional procedures can fail to detect coliforms in potable water, the effects of increased sampling frequency and alternative bacteriological media on coliform detection were evaluated for samples from groundwater-fed public water supply systems. For 1560 drinking wate...

  5. Design and performance of an automated radionuclide separator: its application on the determination of ⁹⁹Tc in groundwater.

    PubMed

    Chung, Kun Ho; Choi, Sang Do; Choi, Geun Sik; Kang, Mun Ja

    2013-11-01

    A modular automated radionuclide separator for (99)Tc (MARS Tc-99) has been developed for the rapid and reproducible separation of technetium in groundwater samples. The control software of MARS Tc-99 was developed in the LabView programming language. An automated radiochemical method for separating (99)Tc was developed and validated by the purification of (99m)Tc tracer solution eluted from a commercial (99)Mo/(99m)Tc generator. The chemical recovery and analytical time for this radiochemical method were found to be 96 ± 2% and 81 min, respectively. PMID:23602584

  6. Automated blood sampling systems for positron emission tomography

    SciTech Connect

    Eriksson, L.; Holte, S.; Bohm, C.; Kesselberg, M.; Hovander, B.

    1988-02-01

    An automated blood sampling system has been constructed and evaluated. Two different detector units in the blood sampling system are compared. Results from studies of blood-brain barrier transfer of a C-11 labelled receptor antagonist will be discussed.

  7. Groundwater and Leachate Monitoring and Sampling at ERDF, CY 2009

    SciTech Connect

    R.L. Weiss, B.L. Lawrence, D.W. Woolery

    2010-07-08

    This document reports the findings of the groundwater and leachate monitoring and sampling at the Environmental restoration Disposal Facility for calendar year 2009. The purpose of this annual monitoring report is to evaluate the conditions of and identify trends for groundwater beneath the ERDF and report leachate results in fulfillment of the requirements specified in the ERDF ROD and the ERDF Amended ROD.

  8. HITTING THE BULL'S-EYE IN GROUNDWATER SAMPLING

    EPA Science Inventory

    Many of the commonly-used groundwater sampling techniques and procedures have resulted from methods developed for water supply investigations. These methods have persisted, even though the monitoring goals may have changed from water supply development to contaminant source and ...

  9. Automated collection and processing of environmental samples

    DOEpatents

    Troyer, Gary L.; McNeece, Susan G.; Brayton, Darryl D.; Panesar, Amardip K.

    1997-01-01

    For monitoring an environmental parameter such as the level of nuclear radiation, at distributed sites, bar coded sample collectors are deployed and their codes are read using a portable data entry unit that also records the time of deployment. The time and collector identity are cross referenced in memory in the portable unit. Similarly, when later recovering the collector for testing, the code is again read and the time of collection is stored as indexed to the sample collector, or to a further bar code, for example as provided on a container for the sample. The identity of the operator can also be encoded and stored. After deploying and/or recovering the sample collectors, the data is transmitted to a base processor. The samples are tested, preferably using a test unit coupled to the base processor, and again the time is recorded. The base processor computes the level of radiation at the site during exposure of the sample collector, using the detected radiation level of the sample, the delay between recovery and testing, the duration of exposure and the half life of the isotopes collected. In one embodiment, an identity code and a site code are optically read by an image grabber coupled to the portable data entry unit.

  10. Rapid Automated Sample Preparation for Biological Assays

    SciTech Connect

    Shusteff, M

    2011-03-04

    Our technology utilizes acoustic, thermal, and electric fields to separate out contaminants such as debris or pollen from environmental samples, lyse open cells, and extract the DNA from the lysate. The objective of the project is to optimize the system described for a forensic sample, and demonstrate its performance for integration with downstream assay platforms (e.g. MIT-LL's ANDE). We intend to increase the quantity of DNA recovered from the sample beyond the current {approx}80% achieved using solid phase extraction methods. Task 1: Develop and test an acoustic filter for cell extraction. Task 2: Develop and test lysis chip. Task 3: Develop and test DNA extraction chip. All chips have been fabricated based on the designs laid out in last month's report.

  11. Automated Sample collection and Analysis unit

    SciTech Connect

    Latner, Norman; Sanderson, Colin G.; Negro, Vincent C.

    1999-03-31

    Autoramp is an atmospheric radionuclide collection and analysis unit designed for unattended operation. A large volume of air passes through one of 31 filter cartridges which is then moved from a sampling chamber and past a bar code reader, to a shielded enclosure. The collected dust-borne radionuclides are counted with a high resolution germanium gamma-ray detector. An analysis is made and the results are transmitted to a central station that can also remotely control the unit.

  12. Automated biowaste sampling system feces monitoring system

    NASA Technical Reports Server (NTRS)

    Hunt, S. R.; Glanfield, E. J.

    1979-01-01

    The Feces Monitoring System (FMS) Program designed, fabricated, assembled and tested an engineering model waste collector system (WCS) to be used in support of life science and medical experiments related to Shuttle missions. The FMS design was patterned closely after the Shuttle WCS, including: interface provisions; mounting; configuration; and operating procedures. These similarities make it possible to eventually substitute an FMS for the Shuttle WCS of Orbiter. In addition, several advanced waste collection features, including the capability of real-time inertial fecal separation and fecal mass measurement and sampling were incorporated into the FMS design.

  13. Nevada National Security Site Integrated Groundwater Sampling Plan, Revision 0

    SciTech Connect

    Marutzky, Sam; Farnham, Irene

    2014-10-01

    The purpose of the Nevada National Security Site (NNSS) Integrated Sampling Plan (referred to herein as the Plan) is to provide a comprehensive, integrated approach for collecting and analyzing groundwater samples to meet the needs and objectives of the U.S. Department of Energy (DOE), National Nuclear Security Administration Nevada Field Office (NNSA/NFO) Underground Test Area (UGTA) Activity. Implementation of this Plan will provide high-quality data required by the UGTA Activity for ensuring public protection in an efficient and cost-effective manner. The Plan is designed to ensure compliance with the UGTA Quality Assurance Plan (QAP). The Plan’s scope comprises sample collection and analysis requirements relevant to assessing the extent of groundwater contamination from underground nuclear testing. This Plan identifies locations to be sampled by corrective action unit (CAU) and location type, sampling frequencies, sample collection methodologies, and the constituents to be analyzed. In addition, the Plan defines data collection criteria such as well-purging requirements, detection levels, and accuracy requirements; identifies reporting and data management requirements; and provides a process to ensure coordination between NNSS groundwater sampling programs for sampling of interest to UGTA. This Plan does not address compliance with requirements for wells that supply the NNSS public water system or wells involved in a permitted activity.

  14. Bias in groundwater samples caused by wellbore flow

    USGS Publications Warehouse

    Reilly, Thomas E.; Franke, O. Lehn; Bennett, Gordon D.

    1989-01-01

    Proper design of physical installations and sampling procedures for groundwater monitoring networks is critical for the detection and analysis of possible contaminants. Monitoring networks associated with known contaminant sources sometimes include an array of monitoring wells with long well screens. The purpose of this paper is: (a) to report the results of a numerical experiment indicating that significant borehole flow can occur within long well screens installed in homogeneous aquifers with very small head differences in the aquifer (less than 0.01 feet between the top and bottom of the screen); (b) to demonstrate that contaminant monitoring wells with long screens may completely fail to fulfill their purpose in many groundwater environments.

  15. Non-Contact Conductivity Measurement for Automated Sample Processing Systems

    NASA Technical Reports Server (NTRS)

    Beegle, Luther W.; Kirby, James P.

    2012-01-01

    A new method has been developed for monitoring and control of automated sample processing and preparation especially focusing on desalting of samples before analytical analysis (described in more detail in Automated Desalting Apparatus, (NPO-45428), NASA Tech Briefs, Vol. 34, No. 8 (August 2010), page 44). The use of non-contact conductivity probes, one at the inlet and one at the outlet of the solid phase sample preparation media, allows monitoring of the process, and acts as a trigger for the start of the next step in the sequence (see figure). At each step of the muti-step process, the system is flushed with low-conductivity water, which sets the system back to an overall low-conductivity state. This measurement then triggers the next stage of sample processing protocols, and greatly minimizes use of consumables. In the case of amino acid sample preparation for desalting, the conductivity measurement will define three key conditions for the sample preparation process. First, when the system is neutralized (low conductivity, by washing with excess de-ionized water); second, when the system is acidified, by washing with a strong acid (high conductivity); and third, when the system is at a basic condition of high pH (high conductivity). Taken together, this non-contact conductivity measurement for monitoring sample preparation will not only facilitate automation of the sample preparation and processing, but will also act as a way to optimize the operational time and use of consumables

  16. Expediting Groundwater Sampling at Hanford and Making It Safer

    SciTech Connect

    Connell, Carl W. Jr.; Carr, Jennifer S.; Hildebrand, R. Douglas; Schatz, Aaron L.; Conley, S. F.; Brown, W. L.

    2013-01-22

    The CH2M HILL Plateau Remediation Company (CHPRC) manages the groundwatermonitoring programs at the Department of Energy's 586-square-mile Hanford site in southeastern Washington state. These programs are regulated by the Resource Conservation and Recovery Act (RCRA), the Comprehensive Environmental Response Compensation and Liability Act (CERCLA), and the Atomic Energy Act (AEA). The purpose of monitoring is to track existing groundwater contamination from past practices, as well as other potential contamination that might originate from RCRA treatment, storage, and disposal (TSD) facilities. An integral part of the groundwater-monitoring program involves taking samples of the groundwater and measuring the water levels in wells scattered across the site. Each year, more than 1,500 wells are accessed for a variety of reasons.

  17. Detection of carryover in automated milk sampling equipment.

    PubMed

    Løvendahl, P; Bjerring, M A

    2006-09-01

    Equipment for sampling milk in automated milking systems may cause carryover problems if residues from one sample remain and are mixed with the subsequent sample. The degree of carryover can be estimated statistically by linear regression models. This study applied various regression analyses to several real and simulated data sets. The statistical power for detecting carryover milk improved considerably when information about cow identity was included and a mixed model was applied. Carryover may affect variation between animals, including genetic variation, and thereby have an impact on management decisions and diagnostic tools based on the milk content of somatic cells. An extended procedure is needed for approval of sampling equipment for automated milking with acceptable latitudes of carryover, and this could include the regression approach taken in this study. PMID:16899700

  18. 40 CFR 257.23 - Ground-water sampling and analysis requirements.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 40 Protection of Environment 26 2013-07-01 2013-07-01 false Ground-water sampling and analysis...-Hazardous Waste Disposal Units Ground-Water Monitoring and Corrective Action § 257.23 Ground-water sampling and analysis requirements. (a) The ground-water monitoring program must include consistent...

  19. 40 CFR 258.53 - Ground-water sampling and analysis requirements.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 40 Protection of Environment 25 2014-07-01 2014-07-01 false Ground-water sampling and analysis... WASTES CRITERIA FOR MUNICIPAL SOLID WASTE LANDFILLS Ground-Water Monitoring and Corrective Action § 258.53 Ground-water sampling and analysis requirements. (a) The ground-water monitoring program...

  20. 40 CFR 258.53 - Ground-water sampling and analysis requirements.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 40 Protection of Environment 26 2013-07-01 2013-07-01 false Ground-water sampling and analysis... WASTES CRITERIA FOR MUNICIPAL SOLID WASTE LANDFILLS Ground-Water Monitoring and Corrective Action § 258.53 Ground-water sampling and analysis requirements. (a) The ground-water monitoring program...

  1. 40 CFR 258.53 - Ground-water sampling and analysis requirements.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 40 Protection of Environment 26 2012-07-01 2011-07-01 true Ground-water sampling and analysis... WASTES CRITERIA FOR MUNICIPAL SOLID WASTE LANDFILLS Ground-Water Monitoring and Corrective Action § 258.53 Ground-water sampling and analysis requirements. (a) The ground-water monitoring program...

  2. 40 CFR 257.23 - Ground-water sampling and analysis requirements.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 40 Protection of Environment 26 2012-07-01 2011-07-01 true Ground-water sampling and analysis...-Hazardous Waste Disposal Units Ground-Water Monitoring and Corrective Action § 257.23 Ground-water sampling and analysis requirements. (a) The ground-water monitoring program must include consistent...

  3. 40 CFR 257.23 - Ground-water sampling and analysis requirements.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 40 Protection of Environment 25 2014-07-01 2014-07-01 false Ground-water sampling and analysis...-Hazardous Waste Disposal Units Ground-Water Monitoring and Corrective Action § 257.23 Ground-water sampling and analysis requirements. (a) The ground-water monitoring program must include consistent...

  4. Modular Automated Processing System (MAPS) for analysis of biological samples.

    SciTech Connect

    Gil, Geun-Cheol; Chirica, Gabriela S.; Fruetel, Julia A.; VanderNoot, Victoria A.; Branda, Steven S.; Schoeniger, Joseph S.; Throckmorton, Daniel J.; Brennan, James S.; Renzi, Ronald F.

    2010-10-01

    We have developed a novel modular automated processing system (MAPS) that enables reliable, high-throughput analysis as well as sample-customized processing. This system is comprised of a set of independent modules that carry out individual sample processing functions: cell lysis, protein concentration (based on hydrophobic, ion-exchange and affinity interactions), interferent depletion, buffer exchange, and enzymatic digestion of proteins of interest. Taking advantage of its unique capacity for enclosed processing of intact bioparticulates (viruses, spores) and complex serum samples, we have used MAPS for analysis of BSL1 and BSL2 samples to identify specific protein markers through integration with the portable microChemLab{trademark} and MALDI.

  5. SUBSURFACE MOBILE PLUTONIUM SPECIATION: SAMPLING ARTIFACTS FOR GROUNDWATER COLLOIDS

    SciTech Connect

    Kaplan, D.; Buesseler, K.

    2010-06-29

    A recent review found several conflicting conclusions regarding colloid-facilitated transport of radionuclides in groundwater and noted that colloids can both facilitate and retard transport. Given these contrasting conclusions and the profound implications even trace concentrations of plutonium (Pu) have on the calculated risk posed to human health, it is important that the methodology used to sample groundwater colloids be free of artifacts. The objective of this study was: (1) to conduct a field study and measure Pu speciation, ({sup 239}Pu and {sup 240}Pu for reduced-Pu{sub aq}, oxidized-Pu{sub aq}, reduced-Pu{sub colloid}, and oxidized-Pu{sub colloid}), in a Savannah River Site (SRS) aquifer along a pH gradient in F-Area, (2) to determine the impact of pumping rate on Pu concentration, Pu speciation, and Pu isotopic ratios, (3) determine the impact of delayed sample processing (as opposed to processing directly from the well).

  6. Microbial Groundwater Sampling Protocol for Fecal-Rich Environments

    PubMed Central

    Harter, Thomas; Watanabe, Naoko; Li, Xunde; Atwill, Edward R; Samuels, William

    2014-01-01

    Inherently, confined animal farming operations (CAFOs) and other intense fecal-rich environments are potential sources of groundwater contamination by enteric pathogens. The ubiquity of microbial matter poses unique technical challenges in addition to economic constraints when sampling wells in such environments. In this paper, we evaluate a groundwater sampling protocol that relies on extended purging with a portable submersible stainless steel pump and Teflon® tubing as an alternative to equipment sterilization. The protocol allows for collecting a large number of samples quickly, relatively inexpensively, and under field conditions with limited access to capacity for sterilizing equipment. The protocol is tested on CAFO monitoring wells and considers three cross-contamination sources: equipment, wellbore, and ambient air. For the assessment, we use Enterococcus, a ubiquitous fecal indicator bacterium (FIB), in laboratory and field tests with spiked and blank samples, and in an extensive, multi-year field sampling campaign on 17 wells within 2 CAFOs. The assessment shows that extended purging can successfully control for equipment cross-contamination, but also controls for significant contamination of the well-head, within the well casing and within the immediate aquifer vicinity of the well-screen. Importantly, our tests further indicate that Enterococcus is frequently entrained in water samples when exposed to ambient air at a CAFO during sample collection. Wellbore and air contamination pose separate challenges in the design of groundwater monitoring strategies on CAFOs that are not addressed by equipment sterilization, but require adequate QA/QC procedures and can be addressed by the proposed sampling strategy. PMID:24903186

  7. Microbial groundwater sampling protocol for fecal-rich environments.

    PubMed

    Harter, Thomas; Watanabe, Naoko; Li, Xunde; Atwill, Edward R; Samuels, William

    2014-09-01

    Inherently, confined animal farming operations (CAFOs) and other intense fecal-rich environments are potential sources of groundwater contamination by enteric pathogens. The ubiquity of microbial matter poses unique technical challenges in addition to economic constraints when sampling wells in such environments. In this paper, we evaluate a groundwater sampling protocol that relies on extended purging with a portable submersible stainless steel pump and Teflon(®) tubing as an alternative to equipment sterilization. The protocol allows for collecting a large number of samples quickly, relatively inexpensively, and under field conditions with limited access to capacity for sterilizing equipment. The protocol is tested on CAFO monitoring wells and considers three cross-contamination sources: equipment, wellbore, and ambient air. For the assessment, we use Enterococcus, a ubiquitous fecal indicator bacterium (FIB), in laboratory and field tests with spiked and blank samples, and in an extensive, multi-year field sampling campaign on 17 wells within 2 CAFOs. The assessment shows that extended purging can successfully control for equipment cross-contamination, but also controls for significant contamination of the well-head, within the well casing and within the immediate aquifer vicinity of the well-screen. Importantly, our tests further indicate that Enterococcus is frequently entrained in water samples when exposed to ambient air at a CAFO during sample collection. Wellbore and air contamination pose separate challenges in the design of groundwater monitoring strategies on CAFOs that are not addressed by equipment sterilization, but require adequate QA/QC procedures and can be addressed by the proposed sampling strategy. PMID:24903186

  8. Automated Imaging Techniques for Biosignature Detection in Geologic Samples

    NASA Astrophysics Data System (ADS)

    Williford, K. H.

    2015-12-01

    Robust biosignature detection in geologic samples typically requires the integration of morphological/textural data with biogeochemical data across a variety of scales. We present new automated imaging and coordinated biogeochemical analysis techniques developed at the JPL Astrobiogeochemistry Laboratory (abcLab) in support of biosignature detection in terrestrial samples as well as those that may eventually be returned from Mars. Automated gigapixel mosaic imaging of petrographic thin sections in transmitted and incident light (including UV epifluorescence) is supported by a microscopy platform with a digital XYZ stage. Images are acquired, processed, and co-registered using multiple software platforms at JPL and can be displayed and shared using Gigapan, a freely available, web-based toolset (e.g. . Automated large area (cm-scale) elemental mapping at sub-micrometer spatial resolution is enabled by a variable pressure scanning electron microscope (SEM) with a large (150 mm2) silicon drift energy dispersive spectroscopy (EDS) detector system. The abcLab light and electron microscopy techniques are augmented by additional elemental chemistry, mineralogy and organic detection/classification using laboratory Micro-XRF and UV Raman/fluorescence systems, precursors to the PIXL and SHERLOC instrument platforms selected for flight on the NASA Mars 2020 rover mission. A workflow including careful sample preparation followed by iterative gigapixel imaging, SEM/EDS, Micro-XRF and UV fluorescence/Raman in support of organic, mineralogic, and elemental biosignature target identification and follow up analysis with other techniques including secondary ion mass spectrometry (SIMS) will be discussed.

  9. DNA separations in microfabricated devices with automated capillary sample introduction.

    PubMed

    Smith, E M; Xu, H; Ewing, A G

    2001-01-01

    A novel method is presented for automated injection of DNA samples into microfabricated separation devices via capillary electrophoresis. A single capillary is used to electrokinetically inject discrete plugs of DNA into an array of separation lanes on a glass chip. A computer-controlled micromanipulator is used to automate this injection process and to repeat injections into five parallel lanes several times over the course of the experiment. After separation, labeled DNA samples are detected by laser-induced fluorescence. Five serial separations of 6-carboxyfluorescein (FAM)-labeled oligonucleotides in five parallel lanes are shown, resulting in the analysis of 25 samples in 25 min. It is estimated that approximately 550 separations of these same oligonucleotides could be performed in one hour by increasing the number of lanes to 37 and optimizing the rate of the manipulator movement. Capillary sample introduction into chips allows parallel separations to be continuously performed in serial, yielding high throughput and minimal need for operator intervention. PMID:11288906

  10. 40 CFR 258.53 - Ground-water sampling and analysis requirements.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... mean levels for each constituent. (2) An analysis of variance (ANOVA) based on ranks followed by... 40 Protection of Environment 24 2010-07-01 2010-07-01 false Ground-water sampling and analysis....53 Ground-water sampling and analysis requirements. (a) The ground-water monitoring program...

  11. 40 CFR 258.53 - Ground-water sampling and analysis requirements.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... mean levels for each constituent. (2) An analysis of variance (ANOVA) based on ranks followed by... 40 Protection of Environment 25 2011-07-01 2011-07-01 false Ground-water sampling and analysis....53 Ground-water sampling and analysis requirements. (a) The ground-water monitoring program...

  12. Influence of vertical flows in wells on groundwater sampling.

    PubMed

    McMillan, Lindsay A; Rivett, Michael O; Tellam, John H; Dumble, Peter; Sharp, Helen

    2014-11-15

    Pumped groundwater sampling evaluations often assume that horizontal head gradients predominate and the sample comprises an average of water quality variation over the well screen interval weighted towards contributing zones of higher hydraulic conductivity (a permeability-weighted sample). However, the pumping rate used during sampling may not always be sufficient to overcome vertical flows in wells driven by ambient vertical head gradients. Such flows are reported in wells with screens between 3 and 10m in length where lower pumping rates are more likely to be used during sampling. Here, numerical flow and particle transport modeling is used to provide insight into the origin of samples under ambient vertical head gradients and under a range of pumping rates. When vertical gradients are present, sample provenance is sensitive to pump intake position, pumping rate and pumping duration. The sample may not be drawn from the whole screen interval even with extended pumping times. Sample bias is present even when the ambient vertical flow in the wellbore is less than the pumping rate. Knowledge of the maximum ambient vertical flow in the well does, however, allow estimation of the pumping rate that will yield a permeability-weighted sample. This rate may be much greater than that recommended for low-flow sampling. In practice at monitored sites, the sampling bias introduced by ambient vertical flows in wells may often be unrecognized or underestimated when drawing conclusions from sampling results. It follows that care should be taken in the interpretation of sampling data if supporting flow investigations have not been undertaken. PMID:24999176

  13. Components for automated microfluidics sample preparation and analysis

    NASA Astrophysics Data System (ADS)

    Archer, M.; Erickson, J. S.; Hilliard, L. R.; Howell, P. B., Jr.; Stenger, D. A.; Ligler, F. S.; Lin, B.

    2008-02-01

    The increasing demand for portable devices to detect and identify pathogens represents an interdisciplinary effort between engineering, materials science, and molecular biology. Automation of both sample preparation and analysis is critical for performing multiplexed analyses on real world samples. This paper selects two possible components for such automated portable analyzers: modified silicon structures for use in the isolation of nucleic acids and a sheath flow system suitable for automated microflow cytometry. Any detection platform that relies on the genetic content (RNA and DNA) present in complex matrices requires careful extraction and isolation of the nucleic acids in order to ensure their integrity throughout the process. This sample pre-treatment step is commonly performed using commercially available solid phases along with various molecular biology techniques that require multiple manual steps and dedicated laboratory space. Regardless of the detection scheme, a major challenge in the integration of total analysis systems is the development of platforms compatible with current isolation techniques that will ensure the same quality of nucleic acids. Silicon is an ideal candidate for solid phase separations since it can be tailored structurally and chemically to mimic the conditions used in the laboratory. For analytical purposes, we have developed passive structures that can be used to fully ensheath one flow stream with another. As opposed to traditional flow focusing methods, our sheath flow profile is truly two dimensional, making it an ideal candidate for integration into a microfluidic flow cytometer. Such a microflow cytometer could be used to measure targets captured on either antibody- or DNA-coated beads.

  14. Monitoring-well network and sampling design for ground-water quality, Wind River Indian Reservation, Wyoming

    USGS Publications Warehouse

    Mason, Jon P.; Sebree, Sonja K.; Quinn, Thomas L.

    2005-01-01

    The Wind River Indian Reservation, located in parts of Fremont and Hot Springs Counties, Wyoming, has a total land area of more than 3,500 square miles. Ground water on the Wind River Indian Reservation is a valuable resource for Shoshone and Northern Arapahoe tribal members and others who live on the Reservation. There are many types of land uses on the Reservation that have the potential to affect the quality of ground-water resources. Urban areas, rural housing developments, agricultural lands, landfills, oil and natural gas fields, mining, and pipeline utility corridors all have the potential to affect ground-water quality. A cooperative study was developed between the U.S. Geological Survey and the Wind River Environmental Quality Commission to identify areas of the Reservation that have the highest potential for ground-water contamination and develop a comprehensive plan to monitor these areas. An arithmetic overlay model for the Wind River Indian Reservation was created using seven geographic information system data layers representing factors with varying potential to affect ground-water quality. The data layers used were: the National Land Cover Dataset, water well density, aquifer sensitivity, oil and natural gas fields and petroleum pipelines, sites with potential contaminant sources, sites that are known to have ground-water contamination, and National Pollutant Discharge Elimination System sites. A prioritization map for monitoring ground-water quality on the Reservation was created using the model. The prioritization map ranks the priority for monitoring ground-water quality in different areas of the Reservation as low, medium, or high. To help minimize bias in selecting sites for a monitoring well network, an automated stratified random site-selection approach was used to select 30 sites for ground-water quality monitoring within the high priority areas. In addition, the study also provided a sampling design for constituents to be monitored, sampling

  15. Influence of piezometer construction on groundwater sampling in fractured rock.

    PubMed

    Kozuskanich, J; Novakowski, K S; Anderson, B C

    2012-01-01

    A numerical model for groundwater flow and solute transport was employed to examine the influence of the screen and sandpack on the collection of a representative geochemical sample from a piezometer monitoring well installation in a discretely fractured bedrock aquifer. The optimization of screen and sandpack combinations was explored for the potential to reduce purging times and volumes in practice. Simulations accounted for the location of the fractures along the well screen, fracture aperture, screen length, and the pumping rate. The variability in the required purging times (t(99)-the time required to achieve 99% fractional contribution from the formation to pump discharge) can be explained by: (1) the relative hydraulic conductivities of the components of the system (fracture, sandpack, and screen), (2) the truncation of the flow field from the fracture to the screen by the upper and/or lower boundary of the sandpack of the flow field from another fracture, and (3) time-dependent drawdown. During pumping, only a portion of the sandpack may actually become hydraulically active. The optimal configuration (shortest purging time) is achieved when the ratios of the screen, sandpack, and fracture hydraulic conductivities are close to 1:1:1. More importantly, the role of the fracture hydraulic conductivity in the ratios is not as crucial to reducing t(99) as having the hydraulic conductivities of the screen and sandpack as similar as possible. This study provides a better understanding of well dynamics during pumping for the purpose of obtaining representative groundwater samples. PMID:21797851

  16. Automated acoustic matrix deposition for MALDI sample preparation.

    PubMed

    Aerni, Hans-Rudolf; Cornett, Dale S; Caprioli, Richard M

    2006-02-01

    Novel high-throughput sample preparation strategies for MALDI imaging mass spectrometry (IMS) and profiling are presented. An acoustic reagent multispotter was developed to provide improved reproducibility for depositing matrix onto a sample surface, for example, such as a tissue section. The unique design of the acoustic droplet ejector and its optimization for depositing matrix solution are discussed. Since it does not contain a capillary or nozzle for fluid ejection, issues with clogging of these orifices are avoided. Automated matrix deposition provides better control of conditions affecting protein extraction and matrix crystallization with the ability to deposit matrix accurately onto small surface features. For tissue sections, matrix spots of 180-200 microm in diameter were obtained and a procedure is described for generating coordinate files readable by a mass spectrometer to permit automated profile acquisition. Mass spectral quality and reproducibility was found to be better than that obtained with manual pipet spotting. The instrument can also deposit matrix spots in a dense array pattern so that, after analysis in a mass spectrometer, two-dimensional ion images may be constructed. Example ion images from a mouse brain are presented. PMID:16448057

  17. Gas-driven pump for ground-water samples

    USGS Publications Warehouse

    Signor, Donald C.

    1978-01-01

    Observation wells installed for artificial-recharge research and other wells used in different ground-water programs are frequently cased with small-diameter steel pipe. To obtain samples from these small-diameter wells in order to monitor water quality, and to calibrate solute-transport models, a small-diameter pump with unique operating characteristics is required that causes a minimum alternation of samples during field sampling. A small-diameter gas-driven pump was designed and built to obtain water samples from wells of two-inch diameter or larger. The pump is a double-piston type with the following characteristics: (1) The water sample is isolated from the operating gas, (2) no source of electricity is ncessary, (3) operation is continuous, (4) use of compressed gas is efficient, and (5) operation is reliable over extended periods of time. Principles of operation, actual operation techniques, gas-use analyses and operating experience are described. Complete working drawings and a component list are included. Recent modifications and pump construction for high-pressure applications also are described. (Woodard-USGS)

  18. Automation of sample plan creation for process model calibration

    NASA Astrophysics Data System (ADS)

    Oberschmidt, James; Abdo, Amr; Desouky, Tamer; Al-Imam, Mohamed; Krasnoperova, Azalia; Viswanathan, Ramya

    2010-04-01

    The process of preparing a sample plan for optical and resist model calibration has always been tedious. Not only because it is required to accurately represent full chip designs with countless combinations of widths, spaces and environments, but also because of the constraints imposed by metrology which may result in limiting the number of structures to be measured. Also, there are other limits on the types of these structures, and this is mainly due to the accuracy variation across different types of geometries. For instance, pitch measurements are normally more accurate than corner rounding. Thus, only certain geometrical shapes are mostly considered to create a sample plan. In addition, the time factor is becoming very crucial as we migrate from a technology node to another due to the increase in the number of development and production nodes, and the process is getting more complicated if process window aware models are to be developed in a reasonable time frame, thus there is a need for reliable methods to choose sample plans which also help reduce cycle time. In this context, an automated flow is proposed for sample plan creation. Once the illumination and film stack are defined, all the errors in the input data are fixed and sites are centered. Then, bad sites are excluded. Afterwards, the clean data are reduced based on geometrical resemblance. Also, an editable database of measurement-reliable and critical structures are provided, and their percentage in the final sample plan as well as the total number of 1D/2D samples can be predefined. It has the advantage of eliminating manual selection or filtering techniques, and it provides powerful tools for customizing the final plan, and the time needed to generate these plans is greatly reduced.

  19. Current advances and strategies towards fully automated sample preparation for regulated LC-MS/MS bioanalysis.

    PubMed

    Zheng, Naiyu; Jiang, Hao; Zeng, Jianing

    2014-09-01

    Robotic liquid handlers (RLHs) have been widely used in automated sample preparation for liquid chromatography-tandem mass spectrometry (LC-MS/MS) bioanalysis. Automated sample preparation for regulated bioanalysis offers significantly higher assay efficiency, better data quality and potential bioanalytical cost-savings. For RLHs that are used for regulated bioanalysis, there are additional requirements, including 21 CFR Part 11 compliance, software validation, system qualification, calibration verification and proper maintenance. This article reviews recent advances in automated sample preparation for regulated bioanalysis in the last 5 years. Specifically, it covers the following aspects: regulated bioanalysis requirements, recent advances in automation hardware and software development, sample extraction workflow simplification, strategies towards fully automated sample extraction, and best practices in automated sample preparation for regulated bioanalysis. PMID:25384595

  20. Groundwater and Leachate Monitoring and Sampling at ERDF, CY 2010

    SciTech Connect

    Weiss, R. L.; Lawrence, B. L.

    2011-06-09

    The purpose of this annual monitoring report is to evaluate the conditions of and identify trends for groundwater beneath the ERDF and report leachate results in fulfillment of the requirements specified in the ERDF ROD2 and the ERDF Amended ROD (EPA 1999). The overall objective of the groundwater monitoring program is to determine whether ERDF has impacted the groundwater. This objective is complicated by the fact that the ERDF is situated downgradient of the numerous groundwater contamination plumes originating from the 200 West Area.

  1. Semicontinuous automated measurement of organic carbon in atmospheric aerosol samples.

    PubMed

    Lu, Chao; Rashinkar, Shilpa M; Dasgupta, Purnendu K

    2010-02-15

    A fully automated measurement system for ambient aerosol organic carbon, capable of unattended operation over extended periods, is described. Particles are collected in a cyclone with water as the collection medium. The collected sample is periodically aspirated by a syringe pump into a holding loop and then delivered to a wet oxidation reactor (WOR). Acid is added, and the WOR is purged to measure dissolved CO(2) or inorganic carbonates (IC) as evolved CO(2). The IC background can often be small and sufficiently constant to be corrected for, without separate measurement, by a blank subtraction. The organic material is now oxidized stepwise or in one step to CO(2). The one-step oxidation involves UV-persulfate treatment in the presence of ozone. This treatment converts organic carbon (OC) to CO(2), but elemental carbon is not oxidized. The CO(2) is continuously purged from solution and collected by two sequential miniature diffusion scrubbers (DSs), a short DS preceding a longer one. Each DS consists of a LiOH-filled porous hydrophobic membrane tube with terminal stainless steel tubes that function as conductance-sensing electrodes. As CO(2) is collected by the LiOH-filled DSs, hydroxide is converted into carbonate and the resulting decrease in conductivity is monitored. The simultaneous use of the dual short and long DS units bearing different concentrations of LiOH permits both good sensitivity and a large dynamic range. The limit of detection (LOD, S/N = 3) is approximately 140 ng of C. With a typical sampling period of 30 min at a sampling rate of 30 L/min, this corresponds to an LOD of 160 ng/m(3). The approach also provides information on the ease of oxidation of the carbonaceous aerosol and hence the nature of the carbon contained therein. Ambient aerosol organic carbon data are presented. PMID:20092351

  2. Automated sampling assessment for molecular simulations using the effective sample size

    PubMed Central

    Zhang, Xin; Bhatt, Divesh; Zuckerman, Daniel M.

    2010-01-01

    To quantify the progress in the development of algorithms and forcefields used in molecular simulations, a general method for the assessment of the sampling quality is needed. Statistical mechanics principles suggest the populations of physical states characterize equilibrium sampling in a fundamental way. We therefore develop an approach for analyzing the variances in state populations, which quantifies the degree of sampling in terms of the effective sample size (ESS). The ESS estimates the number of statistically independent configurations contained in a simulated ensemble. The method is applicable to both traditional dynamics simulations as well as more modern (e.g., multi–canonical) approaches. Our procedure is tested in a variety of systems from toy models to atomistic protein simulations. We also introduce a simple automated procedure to obtain approximate physical states from dynamic trajectories: this allows sample–size estimation in systems for which physical states are not known in advance. PMID:21221418

  3. Y-12 Groundwater Protection Program Groundwater and Surface Water Sampling and Analysis Plan for Calendar Year 2004

    SciTech Connect

    Elvado Environmental LLC for the Environmental Compliance Department ES&H Division, Y-12 National Security Complex Oak Ridge, Tennessee

    2003-09-30

    This plan provides a description of the groundwater and surface water quality monitoring activities planned for calendar year (CY) 2004 at the U.S. Department of Energy (DOE) Y-12 National Security Complex that will be managed by the Y-12 Groundwater Protection Program (GWPP). Groundwater and surface water monitoring performed by the GWPP during CY 2004 will be in accordance with the following requirements of DOE Order 5400.1: (1) to maintain surveillance of existing and potential groundwater contamination sources; (2) to provide for the early detection of groundwater contamination and determine the quality of groundwater and surface water where contaminants are most likely to migrate beyond the Oak Ridge Reservation property line; (3) to identify and characterize long-term trends in groundwater quality at Y-12; and (4) to provide data to support decisions concerning the management and protection of groundwater resources. Groundwater and surface water monitoring during CY 2004 will be performed primarily in three hydrogeologic regimes at Y-12: the Bear Creek Hydrogeologic Regime (Bear Creek Regime), the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime), and the Chestnut Ridge Hydrogeologic Regime (Chestnut Ridge Regime). The Bear Creek and East Fork regimes are located in Bear Creek Valley, and the Chestnut Ridge Regime is located south of Y-12 (Figure A.1). Additional surface water monitoring will be performed north of Pine Ridge, along the boundary of the Oak Ridge Reservation (Figure A.1). Modifications to the CY 2004 monitoring program may be necessary during implementation. Changes in programmatic requirements may alter the analytes specified for selected monitoring wells, or wells could be added or removed from the planned monitoring network. All modifications to the monitoring program will be approved by the Y-12 GWPP manager and documented as addenda to this sampling and analysis plan.

  4. Y-12 Groundwater Protection Program Groundwater and Surface Water Sampling and Analysis Plan for Calendar Year 2005

    SciTech Connect

    2004-09-30

    This plan provides a description of the groundwater and surface water quality monitoring activities planned for calendar year (CY) 2005 at the U.S. Department of Energy (DOE) Y-12 National Security Complex (Y-12) that will be managed by the Y-12 Groundwater Protection Program (GWPP). Groundwater and surface water monitoring performed by the GWPP during CY 2005 will be in accordance with DOE Order 540.1 requirements and the following goals: (1) to maintain surveillance of existing and potential groundwater contamination sources; (2) to provide for the early detection of groundwater contamination and determine the quality of groundwater and surface water where contaminants are most likely to migrate beyond the Oak Ridge Reservation property line; (3) to identify and characterize long-term trends in groundwater quality at Y-12; and (4) to provide data to support decisions concerning the management and protection of groundwater resources. Groundwater and surface water monitoring during CY 2005 will be performed primarily in three hydrogeologic regimes at Y-12: the Bear Creek Hydrogeologic Regime (Bear Creek Regime), the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime), and the Chestnut Ridge Hydrogeologic Regime (Chestnut Ridge Regime). The Bear Creek and East Fork regimes are located in Bear Creek Valley, and the Chestnut Ridge Regime is located south of Y-12 (Figure A.1). Additional surface water monitoring will be performed north of Pine Ridge, along the boundary of the Oak Ridge Reservation (Figure A.1). Modifications to the CY 2005 monitoring program may be necessary during implementation. Changes in programmatic requirements may alter the analytes specified for selected monitoring wells or may add or remove wells from the planned monitoring network. All modifications to the monitoring program will be approved by the Y-12 GWPP manager and documented as addenda to this sampling and analysis plan.

  5. Y-12 Groundwater Protection Program Groundwater and Surface Water Sampling and Analysis Plan for Calendar Year 2003

    SciTech Connect

    2002-09-01

    This plan provides a description of the groundwater and surface water quality monitoring activities planned for calendar year (CY) 2003 at the U.S. Department of Energy (DOE) Y-12 National Security Complex that will be managed by the Y-12 Groundwater Protection Program (GWPP). Groundwater and surface water monitoring performed by the GWPP during CY 2003 will be in accordance with the following requirements of DOE Order 5400.1: (1) to evaluate and maintain surveillance of existing and potential groundwater contamination sources; (2) to provide for the early detection of groundwater contamination and determine the quality of groundwater and surface water where contaminants are most likely to migrate beyond the Oak Ridge Reservation property line; (3) to identify and characterize long-term trends in groundwater quality at Y-12; and (4) to provide data to support decisions concerning the management and protection of groundwater resources. Groundwater and surface water monitoring during CY 2003 will be performed primarily in three hydrogeologic regimes at Y-12: the Bear Creek Hydrogeologic Regime (Bear Creek Regime), the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime), and the Chestnut Ridge Hydrogeologic Regime (Chestnut Ridge Regime). The Bear Creek and East Fork regimes are located in Bear Creek Valley, and the Chestnut Ridge Regime is located south of Y-12 (Figure A.1). Additional surface water monitoring will be performed north of Pine Ridge, along the boundary of the Oak Ridge Reservation (Figure A.1). Modifications to the CY 2003 monitoring program may be necessary during implementation. Changes in programmatic requirements may alter the analytes specified for selected monitoring wells, or wells could be added or removed from the planned monitoring network. All modifications to the monitoring program will be approved by the Y-12 GWPP manager and documented as addenda to this sampling and analysis plan.

  6. Y-12 Groundwater Protection Program Groundwater and Surface Water Sampling and Analysis Plan For Calendar Year 2002.

    SciTech Connect

    2001-09-01

    This plan provides a description of the groundwater and surface water quality monitoring activities planned for calendar year (CY) 2002 at the U.S. Department of Energy (DOE) Y-12 National Security Complex that will be managed by the Y-12 Groundwater Protection Program (GWPP). Groundwater and surface water monitoring performed by the GWPP during CY 2002 will be in accordance with the following requirements of DOE Order 5400.1: to evaluate and maintain surveillance of existing and potential groundwater contamination sources; to provide for the early detection of groundwater contamination and determine the quality of groundwater and surface water where contaminants are most likely to migrate beyond the Oak Ridge Reservation property line; to identify and characterize long-term trends in groundwater quality at Y-12; and to provide data to support decisions concerning the management and protection of groundwater resources. Groundwater and surface water monitoring during CY 2002 will be performed in three hydrogeologic regimes at Y-12: the Bear Creek Hydrogeologic Regime (Bear Creek Regime), the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime), and the Chestnut Ridge Hydrogeologic Regime (Chestnut Ridge Regime). The Bear Creek and East Fork regimes are located in Bear Creek Valley, and the Chestnut Ridge Regime is located south of Y-12 (Figure A.1). Additional surface water monitoring will be performed north of Pine Ridge, along the boundary of the Oak Ridge Reservation (Figure A.1). Modifications to the CY 2002 monitoring program may be necessary during implementation. Changes in programmatic requirements may alter the analytes specified for selected monitoring wells, or wells could be added or removed from the planned monitoring network. All modifications to the monitoring program will be approved by the Y-12 GWPP manager and documented as addenda to this sampling and analysis plan.

  7. Automation of high-frequency sampling of environmental waters for reactive species

    NASA Astrophysics Data System (ADS)

    Kim, H.; Bishop, J. K.; Wood, T.; Fung, I.; Fong, M.

    2011-12-01

    Trace metals, particularly iron and manganese, play a critical role in some ecosystems as a limiting factor to determine primary productivity, in geochemistry, especially redox chemistry as important electron donors and acceptors, and in aquatic environments as carriers of contaminant transport. Dynamics of trace metals are closely related to various hydrologic events such as rainfall. Storm flow triggers dramatic changes of both dissolved and particulate trace metals concentrations and affects other important environmental parameters linked to trace metal behavior such as dissolved organic carbon (DOC). To improve our understanding of behaviors of trace metals and underlying processes, water chemistry information must be collected for an adequately long period of time at higher frequency than conventional manual sampling (e.g. weekly, biweekly). In this study, we developed an automated sampling system to document the dynamics of trace metals, focusing on Fe and Mn, and DOC for a multiple-year high-frequency geochemistry time series in a small catchment, called Rivendell located at Angelo Coast Range Reserve, California. We are sampling ground and streamwater using the automated sampling system in daily-frequency and the condition of the site is substantially variable from season to season. The ranges of pH of ground and streamwater are pH 5 - 7 and pH 7.8 - 8.3, respectively. DOC is usually sub-ppm, but during rain events, it increases by an order of magnitude. The automated sampling system focuses on two aspects- 1) a modified design of sampler to improve sample integrity for trace metals and DOC and 2) remote controlling system to update sampling volume and timing according to hydrological conditions. To maintain sample integrity, the developed method employed gravity filtering using large volume syringes (140mL) and syringe filters connected to a set of polypropylene bottles and a borosilicate bottle via Teflon tubing. Without filtration, in a few days, the

  8. Groundwater and Leachate Monitoring and Sampling at ERDF, CY 2006

    SciTech Connect

    R. L. Weiss

    2007-05-30

    The purpose of this annual monitoring report is to evaluate the conditions of and identify trends for groundwater beneath the ERDF and to report leachate results in fulfillment of the requirements specified in the ERDF ROD.

  9. Groundwater and Leachate Monitoring and Sampling at ERDF, CY 2008

    SciTech Connect

    R. L. Weiss; D. W. Woolery

    2009-09-03

    The purpose of this annual monitoring report is to evaluate the conditions of and identify trends for groundwater beneath the ERDF, to report leachate results in fulfillment of the requirements specified in the ERDF ROD and the ERDF Amended ROD.

  10. Groundwater and Leachate Monitoring and Sampling at ERDF, CY 2006

    SciTech Connect

    R. L. Weiss

    2007-12-05

    The purpose of this annual monitoring report is to evaluate the conditions of and identify trends for groundwater beneath the ERDF and to report leachate results in fulfillment of the requirements specified in the ERDF ROD.

  11. COLLOIDAL CONSIDERATIONS IN GROUNDWATER SAMPLING AND CONTAMINANT TRANSPORT PREDICTIONS

    EPA Science Inventory

    The association of contaminants with suspended colloidal material in groundwater is a possible transport mechanism and a complicating factor for accurate estimations of the aqueous geochemistry of subsurface systems. esearch to date indicates colloidal facilitated transport of co...

  12. Y-12 Groundwater Protection Program Groundwater and Surface Water Sampling and Analysis Plan For Calendar Year 2009

    SciTech Connect

    Elvado Environmental LLC

    2008-12-01

    This plan provides a description of the groundwater and surface water quality monitoring activities planned for calendar year (CY) 2009 at the U.S. Department of Energy (DOE) Y-12 National Security Complex (Y-12) that will be managed by the Y-12 Groundwater Protection Program (GWPP). Groundwater and surface water monitoring performed by the GWPP during CY 2009 will be in accordance with DOE Order 540.1 requirements and the following goals: (1) to protect the worker, the public, and the environment; (2) to maintain surveillance of existing and potential groundwater contamination sources; (3) to provide for the early detection of groundwater contamination and determine the quality of groundwater and surface water where contaminants are most likely to migrate beyond the Oak Ridge Reservation property line; (4) to identify and characterize long-term trends in groundwater quality at Y-12; and (5) to provide data to support decisions concerning the management and protection of groundwater resources. Groundwater and surface water monitoring during CY 2009 will be performed primarily in three hydrogeologic regimes at Y-12: the Bear Creek Hydrogeologic Regime (Bear Creek Regime), the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime), and the Chestnut Ridge Hydrogeologic Regime (Chestnut Ridge Regime). The Bear Creek and East Fork regimes are located in Bear Creek Valley, and the Chestnut Ridge Regime is located south of Y-12 (Figure A.1). Additional surface water monitoring will be performed north of Pine Ridge, along the boundary of the Oak Ridge Reservation. Modifications to the CY 2009 monitoring program may be necessary during implementation. Changes in programmatic requirements may alter the analytes specified for selected monitoring wells or may add or remove wells from the planned monitoring network. All modifications to the monitoring program will be approved by the Y-12 GWPP manager and documented as addenda to this sampling and analysis plan

  13. Groundwater.

    ERIC Educational Resources Information Center

    Braids, Olin C.; Gillies, Nola P.

    1978-01-01

    Presents a literature review of groundwater quality covering publications of 1977. This review includes: (1) sources of groundwater contamination; and (2) management of groundwater. A list of 59 references is also presented. (HM)

  14. Manual versus automated blood sampling: impact of repeated blood sampling on stress parameters and behavior in male NMRI mice

    PubMed Central

    Kalliokoski, Otto; Sørensen, Dorte B; Hau, Jann; Abelson, Klas S P

    2014-01-01

    Facial vein (cheek blood) and caudal vein (tail blood) phlebotomy are two commonly used techniques for obtaining blood samples from laboratory mice, while automated blood sampling through a permanent catheter is a relatively new technique in mice. The present study compared physiological parameters, glucocorticoid dynamics as well as the behavior of mice sampled repeatedly for 24 h by cheek blood, tail blood or automated blood sampling from the carotid artery. Mice subjected to cheek blood sampling lost significantly more body weight, had elevated levels of plasma corticosterone, excreted more fecal corticosterone metabolites, and expressed more anxious behavior than did the mice of the other groups. Plasma corticosterone levels of mice subjected to tail blood sampling were also elevated, although less significantly. Mice subjected to automated blood sampling were less affected with regard to the parameters measured, and expressed less anxious behavior. We conclude that repeated blood sampling by automated blood sampling and from the tail vein is less stressful than cheek blood sampling. The choice between automated blood sampling and tail blood sampling should be based on the study requirements, the resources of the laboratory and skills of the staff. PMID:24958546

  15. 40 CFR 257.23 - Ground-water sampling and analysis requirements.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... mean and the background mean levels for each constituent. (2) An analysis of variance (ANOVA) based on... 40 Protection of Environment 25 2011-07-01 2011-07-01 false Ground-water sampling and analysis... and analysis requirements. (a) The ground-water monitoring program must include consistent...

  16. 40 CFR 257.23 - Ground-water sampling and analysis requirements.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... mean and the background mean levels for each constituent. (2) An analysis of variance (ANOVA) based on... 40 Protection of Environment 24 2010-07-01 2010-07-01 false Ground-water sampling and analysis... and analysis requirements. (a) The ground-water monitoring program must include consistent...

  17. Automated biowaste sampling system improved feces collection, mass measurement and sampling. [by use of a breadboard model

    NASA Technical Reports Server (NTRS)

    Fogal, G. L.; Mangialardi, J. K.; Young, R.

    1974-01-01

    The capability of the basic automated Biowaste Sampling System (ABSS) hardware was extended and improved through the design, fabrication and test of breadboard hardware. A preliminary system design effort established the feasibility of integrating the breadboard concepts into the ABSS.

  18. Automated Aqueous Sample Concentration Methods for in situ Astrobiological Instrumentation

    NASA Astrophysics Data System (ADS)

    Aubrey, A. D.; Grunthaner, F. J.

    2009-12-01

    The era of wet chemical experiments for in situ planetary science investigations is upon us, as evidenced by recent results from the surface of Mars by Phoenix’s microscopy, electrochemistry, and conductivity analyzer, MECA [1]. Studies suggest that traditional thermal volatilization methods for planetary science in situ investigations induce organic degradation during sample processing [2], an effect that is enhanced in the presence of oxidants [3]. Recent developments have trended towards adaptation of non-destructive aqueous extraction and analytical methods for future astrobiological instrumentation. Wet chemical extraction techniques under investigation include subcritical water extraction, SCWE [4], aqueous microwave assisted extraction, MAE, and organic solvent extraction [5]. Similarly, development of miniaturized analytical space flight instruments that require aqueous extracts include microfluidic capillary electrophoresis chips, μCE [6], liquid-chromatography mass-spectrometrometers, LC-MS [7], and life marker chips, LMC [8]. If organics are present on the surface of Mars, they are expected to be present at extremely low concentrations (parts-per-billion), orders of magnitude below the sensitivities of most flight instrument technologies. Therefore, it becomes necessary to develop and integrate concentration mechanisms for in situ sample processing before delivery to analytical flight instrumentation. We present preliminary results of automated solid-phase-extraction (SPE) sample purification and concentration methods for the treatment of highly saline aqueous soil extracts. These methods take advantage of the affinity of low molecular weight organic compounds with natural and synthetic scavenger materials. These interactions allow for the separation of target organic analytes from unfavorable background species (i.e. salts) during inline treatment, and a clever method for selective desorption is utilized to obtain concentrated solutions on the order

  19. Groundwater and Leachate Monitoring and Sampling at ERDF, CY 2007

    SciTech Connect

    R. L. Weiss; T. A. Lee

    2008-06-25

    The purpose of this annual monitoring report is to evaluate the conditions of and identify trends for groundwater beneath the Environmental Restoration Disposal Facility and to report leachate results in fulfillment of the requirements specified in the ERDF Record of Decision and the ERDF Amended Record of Decision.

  20. Calibration and use of continuous heat-type automated seepage meters for submarine groundwater discharge measurements

    NASA Astrophysics Data System (ADS)

    Mwashote, B. M.; Burnett, W. C.; Chanton, J.; Santos, I. R.; Dimova, N.; Swarzenski, P. W.

    2010-03-01

    Submarine groundwater discharge (SGD) assessments were conducted both in the laboratory and at a field site in the northeastern Gulf of Mexico, using a continuous heat-type automated seepage meter (seepmeter). The functioning of the seepmeter is based on measurements of a temperature gradient in the water between downstream and upstream positions in its flow pipe. The device has the potential of providing long-term, high-resolution measurements of SGD. Using a simple inexpensive laboratory set-up, we have shown that connecting an extension cable to the seepmeter has a negligible effect on its measuring capability. Similarly, the observed influence of very low temperature (≤3 °C) on seepmeter measurements can be accounted for by conducting calibrations at such temperatures prior to field deployments. Compared to manual volumetric measurements, calibration experiments showed that at higher water flow rates (>28 cm day -1 or cm 3 cm -2 day -1) an analog flowmeter overestimated flow rates by ≥7%. This was apparently due to flow resistance, turbulence and formation of air bubbles in the seepmeter water flow tubes. Salinity had no significant effect on the performance of the seepmeter. Calibration results from fresh water and sea water showed close agreement at a 95% confidence level significance between the data sets from the two media ( R2 = 0.98). Comparatively, the seepmeter SGD measurements provided data that are comparable to manually-operated seepage meters, the radon geochemical tracer approach, and an electromagnetic (EM) seepage meter.

  1. Calibration and use of continuous heat-type automated seepage meters for submarine groundwater discharge measurements

    USGS Publications Warehouse

    Mwashote, B.M.; Burnett, W.C.; Chanton, J.; Santos, I.R.; Dimova, N.; Swarzenski, P.W.

    2010-01-01

    Submarine groundwater discharge (SGD) assessments were conducted both in the laboratory and at a field site in the northeastern Gulf of Mexico, using a continuous heat-type automated seepage meter (seepmeter). The functioning of the seepmeter is based on measurements of a temperature gradient in the water between downstream and upstream positions in its flow pipe. The device has the potential of providing long-term, high-resolution measurements of SGD. Using a simple inexpensive laboratory set-up, we have shown that connecting an extension cable to the seepmeter has a negligible effect on its measuring capability. Similarly, the observed influence of very low temperature (???3 ??C) on seepmeter measurements can be accounted for by conducting calibrations at such temperatures prior to field deployments. Compared to manual volumetric measurements, calibration experiments showed that at higher water flow rates (>28 cm day-1 or cm3 cm-2 day-1) an analog flowmeter overestimated flow rates by ???7%. This was apparently due to flow resistance, turbulence and formation of air bubbles in the seepmeter water flow tubes. Salinity had no significant effect on the performance of the seepmeter. Calibration results from fresh water and sea water showed close agreement at a 95% confidence level significance between the data sets from the two media (R2 = 0.98). Comparatively, the seepmeter SGD measurements provided data that are comparable to manually-operated seepage meters, the radon geochemical tracer approach, and an electromagnetic (EM) seepage meter. ?? 2009 Elsevier Ltd.

  2. Y-12 Groundwater Protection Program Groundwater and Surface Water Sampling and Analysis Plan for Calendar Year 2007

    SciTech Connect

    2006-09-01

    This plan provides a description of the groundwater and surface water quality monitoring activities planned for calendar year (CY) 2007 at the U.S. Department of Energy (DOE) Y-12 National Security Complex (Y-12) that will be managed by the Y-12 Groundwater Protection Program (GWPP). Groundwater and surface water monitoring performed by the GWPP during CY 2007 will be in accordance with DOE Order 540.1 requirements and the following goals: (1) to protect the worker, the public, and the environment; (2) to maintain surveillance of existing and potential groundwater contamination sources; (3) to provide for the early detection of groundwater contamination and determine the quality of groundwater and surface water where contaminants are most likely to migrate beyond the Oak Ridge Reservation property line; (4) to identify and characterize long-term trends in groundwater quality at Y-12; and (5) to provide data to support decisions concerning the management and protection of groundwater resources. Groundwater and surface water monitoring during CY 2007 will be performed primarily in three hydrogeologic regimes at Y-12: the Bear Creek Hydrogeologic Regime (Bear Creek Regime), the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime), and the Chestnut Ridge Hydrogeologic Regime (Chestnut Ridge Regime). The Bear Creek and East Fork regimes are located in Bear Creek Valley, and the Chestnut Ridge Regime is located south of Y-12 (Figure A.1). Additional surface water monitoring will be performed north of Pine Ridge, along the boundary of the Oak Ridge Reservation (Figure A.1). Modifications to the CY 2007 monitoring program may be necessary during implementation. Changes in programmatic requirements may alter the analytes specified for selected monitoring wells or may add or remove wells from the planned monitoring network. All modifications to the monitoring program will be approved by the Y-12 GWPP manager and documented as addenda to this sampling and

  3. Y-12 Groundwater Protection Program Groundwater and Surface water Sampling and Analysis Plan for Calendar Year 2006

    SciTech Connect

    N /A

    2006-01-01

    This plan provides a description of the groundwater and surface water quality monitoring activities planned for calendar year (CY) 2006 at the U.S. Department of Energy (DOE) Y-12 National Security Complex (Y-12) that will be managed by the Y-12 Groundwater Protection Program (GWPP). Groundwater and surface water monitoring performed by the GWPP during CY 2006 will be in accordance with DOE Order 540.1 requirements and the following goals: {sm_bullet} to maintain surveillance of existing and potential groundwater contamination sources; {sm_bullet} to provide for the early detection of groundwater contamination and determine the quality of groundwater and surface water where contaminants are most likely to migrate beyond the Oak Ridge Reservation property line; {sm_bullet} to identify and characterize long-term trends in groundwater quality at Y-12; and ! to provide data to support decisions concerning the management and protection of groundwater resources. Groundwater and surface water monitoring during CY 2006 will be performed primarily in three hydrogeologic regimes at Y-12: the Bear Creek Hydrogeologic Regime (Bear Creek Regime), the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime), and the Chestnut Ridge Hydrogeologic Regime (Chestnut Ridge Regime). The Bear Creek and East Fork regimes are located in Bear Creek Valley, and the Chestnut Ridge Regime is located south of Y-12 (Figure A.1). Additional surface water monitoring will be performed north of Pine Ridge, along the boundary of the Oak Ridge Reservation (Figure A.1). Modifications to the CY 2006 monitoring program may be necessary during implementation. Changes in programmatic requirements may alter the analytes specified for selected monitoring wells or may add or remove wells from the planned monitoring network. All modifications to the monitoring program will be approved by the Y-12 GWPP manager and documented as addenda to this sampling and analysis plan. The following sections of

  4. COMPARISON OF GROUND-WATER SAMPLING DEVICES BASED ON EQUILIBRATION OF WATER QUALITY INDICATOR PARAMETERS

    EPA Science Inventory

    The sampling device selected when obtaining ground-water samples can have a significant impact on the representativeness and reproducibility of the sample. his study evaluated several different sampling devices (low speed submersible pump, peristaltic pump, and bladder pump) in t...

  5. Y-12 Groundwater Protection Program Groundwater And Surface Water Sampling And Analysis Plan For Calendar Year 2008

    SciTech Connect

    Elvado Environmental LLC

    2007-09-01

    This plan provides a description of the groundwater and surface water quality monitoring activities planned for calendar year (CY) 2008 at the U.S. Department of Energy (DOE) Y-12 National Security Complex (Y-12) that will be managed by the Y-12 Groundwater Protection Program (GWPP). Groundwater and surface water monitoring performed by the GWPP during CY 2008 will be in accordance with DOE Order 540.1 requirements and the following goals: (1) to protect the worker, the public, and the environment; (2) to maintain surveillance of existing and potential groundwater contamination sources; (3) to provide for the early detection of groundwater contamination and determine the quality of groundwater and surface water where contaminants are most likely to migrate beyond the Oak Ridge Reservation property line; (4) to identify and characterize long-term trends in groundwater quality at Y-12; and (5) to provide data to support decisions concerning the management and protection of groundwater resources. Groundwater and surface water monitoring during CY 2008 will be performed primarily in three hydrogeologic regimes at Y-12: the Bear Creek Hydrogeologic Regime (Bear Creek Regime), the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime), and the Chestnut Ridge Hydrogeologic Regime (Chestnut Ridge Regime). The Bear Creek and East Fork regimes are located in Bear Creek Valley, and the Chestnut Ridge Regime is located south of Y-12 (Figure A.1). Additional surface water monitoring will be performed north of Pine Ridge, along the boundary of the Oak Ridge Reservation (Figure A.1). Modifications to the CY 2008 monitoring program may be necessary during implementation. Changes in programmatic requirements may alter the analytes specified for selected monitoring wells or may add or remove wells from the planned monitoring network. All modifications to the monitoring program will be approved by the Y-12 GWPP manager and documented as addenda to this sampling and

  6. A modular approach for automated sample preparation and chemical analysis

    NASA Technical Reports Server (NTRS)

    Clark, Michael L.; Turner, Terry D.; Klingler, Kerry M.; Pacetti, Randolph

    1994-01-01

    Changes in international relations, especially within the past several years, have dramatically affected the programmatic thrusts of the U.S. Department of Energy (DOE). The DOE now is addressing the environmental cleanup required as a result of 50 years of nuclear arms research and production. One major obstacle in the remediation of these areas is the chemical determination of potentially contaminated material using currently acceptable practices. Process bottlenecks and exposure to hazardous conditions pose problems for the DOE. One proposed solution is the application of modular automated chemistry using Standard Laboratory Modules (SLM) to perform Standard Analysis Methods (SAM). The Contaminant Analysis Automation (CAA) Program has developed standards and prototype equipment that will accelerate the development of modular chemistry technology and is transferring this technology to private industry.

  7. Uranium levels in Cypriot groundwater samples determined by ICP-MS and α-spectroscopy.

    PubMed

    Charalambous, Chrystalla; Aletrari, Maria; Piera, Panagiota; Nicolaidou-Kanari, Popi; Efstathiou, Maria; Pashalidis, Ioannis

    2013-02-01

    The uranium concentration and the isotopic ratio (238)U/(234)U have been determined in Cypriot groundwater samples by ICP-MS after ultrafiltration and acidification of the samples and α-spectroscopy after pre-concentration and separation of uranium by cation-exchange (Chelex 100 resin) and electro-deposition on stainless steel discs. The uranium concentration in the groundwater samples varies strongly between 0.1 and 40 μg l(-1). The highest uranium concentrations are found in groundwater samples associated with sedimentary rock formations and the obtained isotopic ratio (238)U/(234)U varies between 0.95 and 1.2 indicating basically the presence of natural uranium in the studied samples. The pH of the groundwater samples is neutral to weak alkaline (7 < pH < 8) and this is attributed to the carbonaceous content of the sedimentary rocks and the ophiolitic origin of the igneous rocks, which form the background geology in Cyprus. Generally, in groundwaters uranium concentration in solution increases with decreasing pH (7 < pH < 8) and this is attributed to the fact that at lower pH dissolution of soil minerals occurs, and uranium, which is adsorbed or forms solid solution with the geological matrix enters the aqueous phase. This is also corroborated by the strong correlation between the uranium concentration and the electrical conductivity (e.g. dissolved solids) measured in the groundwaters under investigation. PMID:23195433

  8. Y-12 Groundwater Protection Program Groundwater And Surface Water Sampling And Analysis Plan For Calendar Year 2012

    SciTech Connect

    Elvado Environmental, LLC

    2011-09-01

    This plan provides a description of the groundwater and surface water quality monitoring activities planned for calendar year (CY) 2012 at the U.S. Department of Energy (DOE) Y-12 National Security Complex (Y-12) that will be managed by the Y-12 Groundwater Protection Program (GWPP). Groundwater and surface water monitoring performed by the GWPP during CY 2012 is in accordance with the following goals: (1) to protect the worker, the public, and the environment; (2) to maintain surveillance of existing and potential groundwater contamination sources; (3) to provide for the early detection of groundwater contamination and determine the quality of groundwater and surface water where contaminants are most likely to migrate beyond the Oak Ridge Reservation property line; (4) to identify and characterize long-term trends in groundwater quality at Y-12; and (5) to provide data to support decisions concerning the management and protection of groundwater resources. Groundwater and surface water monitoring will be performed in three hydrogeologic regimes at Y-12: the Bear Creek Hydrogeologic Regime (Bear Creek Regime), the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime), and the Chestnut Ridge Hydrogeologic Regime (Chestnut Ridge Regime). The Bear Creek and East Fork regimes are located in Bear Creek Valley and the Chestnut Ridge Regime is located south of Y-12 (Figure A.1). Additional surface water monitoring will be performed north of Pine Ridge along the boundary of the Oak Ridge Reservation. Modifications to the CY 2012 monitoring program may be necessary during implementation. Changes in programmatic requirements may alter the analytes specified for selected monitoring wells or may add or remove wells from the planned monitoring network. Each modification to the monitoring program will be approved by the Y-12 GWPP manager and documented as an addendum to this sampling and analysis plan. The following sections of this report provide details regarding

  9. Y-12 Groundwater Protection Program Groundwater And Surface Water Sampling And Analysis Plan For Calendar Year 2010

    SciTech Connect

    Elvado Environmental LLC

    2009-09-01

    This plan provides a description of the groundwater and surface water quality monitoring activities planned for calendar year (CY) 2010 at the U.S. Department of Energy (DOE) Y-12 National Security Complex (Y-12) that will be managed by the Y-12 Groundwater Protection Program (GWPP). Groundwater and surface water monitoring performed by the GWPP during CY 2010 will be in accordance with requirements of DOE Order 540.1A and the following goals: (1) to protect the worker, the public, and the environment; (2) to maintain surveillance of existing and potential groundwater contamination sources; (3) to provide for the early detection of groundwater contamination and determine the quality of groundwater and surface water where contaminants are most likely to migrate beyond the Oak Ridge Reservation property line; (4) to identify and characterize long-term trends in groundwater quality at Y-12; and (5) to provide data to support decisions concerning the management and protection of groundwater resources. Groundwater and surface water monitoring during CY 2010 will be performed primarily in three hydrogeologic regimes at Y-12: the Bear Creek Hydrogeologic Regime (Bear Creek Regime), the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime), and the Chestnut Ridge Hydrogeologic Regime (Chestnut Ridge Regime). The Bear Creek and East Fork regimes are located in Bear Creek Valley, and the Chestnut Ridge Regime is located south of Y-12 (Figure A.1). Additional surface water monitoring will be performed north of Pine Ridge, along the boundary of the Oak Ridge Reservation. Modifications to the CY 2010 monitoring program may be necessary during implementation. Changes in programmatic requirements may alter the analytes specified for selected monitoring wells or may add or remove wells from the planned monitoring network. All modifications to the monitoring program will be approved by the Y-12 GWPP manager and documented as addenda to this sampling and analysis plan

  10. Y-12 Groundwater Protection Program Groundwater And Surface Water Sampling And Analysis Plan For Calendar Year 2011

    SciTech Connect

    Elvado Environmental LLC

    2010-12-01

    This plan provides a description of the groundwater and surface water quality monitoring activities planned for calendar year (CY) 2011 at the U.S. Department of Energy (DOE) Y-12 National Security Complex (Y-12) that will be managed by the Y-12 Groundwater Protection Program (GWPP). Groundwater and surface water monitoring performed by the GWPP during CY 2011 will be in accordance with requirements of DOE Order 540.1A and the following goals: (1) to protect the worker, the public, and the environment; (2) to maintain surveillance of existing and potential groundwater contamination sources; (3) to provide for the early detection of groundwater contamination and determine the quality of groundwater and surface water where contaminants are most likely to migrate beyond the Oak Ridge Reservation property line; (4) to identify and characterize long-term trends in groundwater quality at Y-12; and (5) to provide data to support decisions concerning the management and protection of groundwater resources. Groundwater and surface water monitoring during CY 2011 will be performed primarily in three hydrogeologic regimes at Y-12: the Bear Creek Hydrogeologic Regime (Bear Creek Regime), the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime), and the Chestnut Ridge Hydrogeologic Regime (Chestnut Ridge Regime). The Bear Creek and East Fork regimes are located in Bear Creek Valley and the Chestnut Ridge Regime is located south of Y-12 (Figure A.1). Additional surface water monitoring will be performed north of Pine Ridge along the boundary of the Oak Ridge Reservation. Modifications to the CY 2011 monitoring program may be necessary during implementation. Changes in programmatic requirements may alter the analytes specified for selected monitoring wells or may add or remove wells from the planned monitoring network. All modifications to the monitoring program will be approved by the Y-12 GWPP manager and documented as addenda to this sampling and analysis plan

  11. SERDP Project Final Report: Integrated Automated Analyzer for Monitoring of Explosives in Groundwater

    SciTech Connect

    Lin, Yuehe; Collins, Greg; Wang, Joseph

    2003-11-12

    The objective of this project is to develop a portable analytical system based on the on-line/on-chip coupling of a miniaturized sample processing system with a microfabricated capillary electrophoresis/electrochemical detector for fast separation/detection of explosives and their degradation products in groundwater. Such a system has the potential to provide reliable, cost-effective characterization of groundwater contamination at DoD sites that are undergoing closure and remediation. A capillary electrophoresis (CE) microdevice, based on the combination of microfabricated separation chips and thick-film electrochemical detector strips, was developed. The microdevice consists of a planar screen-printed carbon line electrode mounted perpendicular to the now direction. Such coupling obviates the need for permanent attachment of the detector, to allow easy and fast replacement of the working electrode. Variables influencing the separation efficiency and amperometric response, including the channel-electrode spacing, separation voltage, or detection potential, are assessed and optimized. The versatility, simplicity, and low-cost advantages of the design are coupled to an attractive performance, with submicromolar detection limits, and good precision. Applicability for assays of mixtures of nitroaromatic explosives has been demonstrated. On-line coupling of preconcentration/microchip separation for explosives will also be presented.

  12. Data validation report for the 100-HR-3 Operable Unit, fifth round groundwater samples

    SciTech Connect

    Vukelich, S.E.

    1994-01-20

    The data from the chemical analysis of 68 samples from the 100-HR-3 Operable Unit Third Quarter 1993 Groundwater Sampling Investigation and their related quality assurance samples were reviewed and validated to verify that reported sample results were of sufficient quality to support decisions regarding remedial actions performed at the site. Sample analysis included inorganics and general chemical parameters. Fifty three samples were validated for radiochemical parameters.

  13. January 2011 Groundwater Sampling at the Gnome-Coach, New Mexico, Site (Data Validation Package)

    SciTech Connect

    2011-11-01

    Annual sampling was conducted January 19, 2011, to monitor groundwater for potential radionuclide contamination at the Gnome-Coach site in New Mexico. The sampling was performed as specified in the Sampling and Analysis Plan for U.S. Department of Energy Office of Legacy Management Sites (LMS/PLN/S04351, continually updated). Well LRL-7 was not sampled per instruction from the lead. A duplicate sample was collected from well USGS-1.Water levels were measured in the monitoring wells onsite.

  14. Automated Sample Exchange Robots for the Structural Biology Beam Lines at the Photon Factory

    SciTech Connect

    Hiraki, Masahiko; Watanabe, Shokei; Yamada, Yusuke; Matsugaki, Naohiro; Igarashi, Noriyuki; Gaponov, Yurii; Wakatsuki, Soichi

    2007-01-19

    We are now developing automated sample exchange robots for high-throughput protein crystallographic experiments for onsite use at synchrotron beam lines. It is part of the fully automated robotics systems being developed at the Photon Factory, for the purposes of protein crystallization, monitoring crystal growth, harvesting and freezing crystals, mounting the crystals inside a hutch and for data collection. We have already installed the sample exchange robots based on the SSRL automated mounting system at our insertion device beam lines BL-5A and AR-NW12A at the Photon Factory. In order to reduce the time required for sample exchange further, a prototype of a double-tonged system was developed. As a result of preliminary experiments with double-tonged robots, the sample exchange time was successfully reduced from 70 seconds to 10 seconds with the exception of the time required for pre-cooling and warming up the tongs.

  15. The Stanford Automated Mounter: pushing the limits of sample exchange at the SSRL macromolecular crystallography beamlines

    PubMed Central

    Russi, Silvia; Song, Jinhu; McPhillips, Scott E.; Cohen, Aina E.

    2016-01-01

    The Stanford Automated Mounter System, a system for mounting and dismounting cryo-cooled crystals, has been upgraded to increase the throughput of samples on the macromolecular crystallography beamlines at the Stanford Synchrotron Radiation Lightsource. This upgrade speeds up robot maneuvers, reduces the heating/drying cycles, pre-fetches samples and adds an air-knife to remove frost from the gripper arms. Sample pin exchange during automated crystal quality screening now takes about 25 s, five times faster than before this upgrade. PMID:27047309

  16. The Stanford Automated Mounter: Pushing the limits of sample exchange at the SSRL macromolecular crystallography beamlines

    DOE PAGESBeta

    Russi, Silvia; Song, Jinhu; McPhillips, Scott E.; Cohen, Aina E.

    2016-02-24

    The Stanford Automated Mounter System, a system for mounting and dismounting cryo-cooled crystals, has been upgraded to increase the throughput of samples on the macromolecular crystallography beamlines at the Stanford Synchrotron Radiation Lightsource. This upgrade speeds up robot maneuvers, reduces the heating/drying cycles, pre-fetches samples and adds an air-knife to remove frost from the gripper arms. As a result, sample pin exchange during automated crystal quality screening now takes about 25 s, five times faster than before this upgrade.

  17. An automated atmospheric sampling system operating on 747 airliners

    NASA Technical Reports Server (NTRS)

    Perkins, P. J.; Gustafsson, U. R. C.

    1976-01-01

    An air sampling system that automatically measures the temporal and spatial distribution of particulate and gaseous constituents of the atmosphere is collecting data on commercial air routes covering the world. Measurements are made in the upper troposphere and lower stratosphere (6 to 12 km) of constituents related to aircraft engine emissions and other pollutants. Aircraft operated by different airlines sample air at latitudes from the Arctic to Australia. This unique system includes specialized instrumentation, a special air inlet probe for sampling outside air, a computerized automatic control, and a data acquisition system. Air constituent and related flight data are tape recorded in flight for later computer processing on the ground.

  18. Vertical Sampling in Recharge Areas Versus Lateral Sampling in Discharge Areas: Assessing the Agricultural Nitrogen Legacy in Groundwater

    NASA Astrophysics Data System (ADS)

    Gilmore, T. E.; Genereux, D. P.; Solomon, D. K.; Mitasova, H.; Burnette, M.

    2014-12-01

    Agricultural nitrogen (N) is a legacy contaminant often found in shallow groundwater systems. This legacy has commonly been observed using well nests (vertical sampling) in recharge areas, but may also be observed by sampling at points in/beneath a streambed using pushable probes along transects across a channel (lateral sampling). We compared results from two different streambed point sampling approaches and from wells in the recharge area to assess whether the different approaches give fundamentally different pictures of (1) the magnitude of N contamination, (2) historic trends in N contamination, and (3) the extent to which denitrification attenuates nitrate transport through the surficial aquifer. Two different arrangements of streambed points (SP) were used to sample groundwater discharging into a coastal plain stream in North Carolina. In July 2012, a 58 m reach was sampled using closely-spaced lateral transects of SP, revealing high average [NO3-] (808 μM, n=39). In March 2013, transects of SP were widely distributed through a 2.7 km reach that contained the 58 m reach and suggested overall lower [NO3-] (210 μM, n=30), possibly due to variation in land use along the longer study reach. Mean [NO3-] from vertical sampling (2 well nests with 3 wells each) was 296 μM. Groundwater apparent ages from SP in the 58 m and 2.7 km reaches suggested lower recharge [NO3-] (observed [NO3-] plus modeled excess N2) in 0-10 year-old water (1250 μM and 525 μM, respectively), compared to higher recharge [NO3-] from 10-30 years ago (about 1600 μM and 900 μM, respectively). In the wells, [NO3-] was highest (835 μM) in groundwater with apparent age of 12-15 years and declined as apparent age increased, a trend that was consistent with SP in the 2.7 km reach. The 58 m reach suggested elevated recharge [NO3-] (>1100 μM) over a 50-year period. Excess N2 from wells suggested that about 62% of nitrate had been removed via denitrification since recharge, versus 51% and 78

  19. Automated biowaste sampling system, solids subsystem operating model, part 2

    NASA Technical Reports Server (NTRS)

    Fogal, G. L.; Mangialardi, J. K.; Stauffer, R. E.

    1973-01-01

    The detail design and fabrication of the Solids Subsystem were implemented. The system's capacity for the collection, storage or sampling of feces and vomitus from six subjects was tested and verified.

  20. An automated atmospheric sampling system operating on 747 airliners

    NASA Technical Reports Server (NTRS)

    Perkins, P.; Gustafsson, U. R. C.

    1975-01-01

    An air sampling system that automatically measures the temporal and spatial distribution of selected particulate and gaseous constituents of the atmosphere has been installed on a number of commercial airliners and is collecting data on commercial air routes covering the world. Measurements of constituents related to aircraft engine emissions and other pollutants are made in the upper troposphere and lower stratosphere (6 to 12 km) in support of the Global Air Sampling Program (GASP). Aircraft operated by different airlines sample air at latitudes from the Arctic to Australia. This system includes specialized instrumentation for measuring carbon monoxide, ozone, water vapor, and particulates, a special air inlet probe for sampling outside air, a computerized automatic control, and a data acquisition system. Air constituents and related flight data are tape recorded in flight for later computer processing on the ground.

  1. Y-12 Plant Groundwater Protection Program Groundwater and Surface Water sampling and Analysis Plan for Calendar Year 2000

    SciTech Connect

    1999-09-01

    This plan provides a description of the groundwater and surface water quality monitoring activities planned for calendar year (CY) 2000 at the U.S. Department of Energy (DOE) Y-12 Plant that will be managed by tie Y-12 Plant Groundwater Protection Program (GWPP). Groundwater and surface water monitoring during CY 2000 will be performed in three hydrogeologic regimes at the Y-12 Plant: the Bear Creek Hydrogeologic Regime (Bear Creek Regime), the Upper East Fork Poplar Creek Hydrogeologic Regime (East Fork Regime), and the Chestnut Ridge Hydrogeologic Regime (Chestnut Ridge Regime). The Bear Creek and East Fork regimes are located in Bear Creek Valley, and the Chestnut Ridge Regime is located south of the Y-12 Plant (Figure 1). Groundwater and surface water monitoring performed under the auspices of the Y-12 Plant GWPP during CY 2000 will comply with: Tennessee Department of Environment and Conservation regulations governing detection monitoring at nonhazardous Solid Waste Disposal Facilities (SWDF); and DOE Order 5400.1 surveillance monitoring and exit pathway/perimeter monitoring. Some of the data collected for these monitoring drivers also will be used to meet monitoring requirements of the Integrated Water Quality Program, which is managed by Bechtel Jacobs Company LLC. Data from five wells that are monitored for SWDF purposes in the Chestnut Ridge Regime will be used to comply with requirements specified in the Resource Conservation and Recovery Act post closure permit regarding corrective action monitoring. Modifications to the CY 2000 monitoring program may be necessary during implementation. Changes in regulatory or programmatic requirements may alter the analytes specified for selected monitoring wells, or wells could be added or removed from the planned monitoring network. All modifications to the monitoring program will be approved by the Y-12 Plant GWPP manager and documented as addenda to this sampling and analysis plan.

  2. Preserving the distribution of inorganic arsenic species in groundwater and acid mine drainage samples.

    PubMed

    Bednar, A J; Garbarino, J R; Ranville, J F; Wildeman, T R

    2002-05-15

    The distribution of inorganic arsenic species must be preserved in the field to eliminate changes caused by metal oxyhydroxide precipitation, photochemical oxidation, and redox reactions. Arsenic species sorb to iron and manganese oxyhydroxide precipitates, and arsenite can be oxidized to arsenate by photolytically produced free radicals in many sample matrices. Several preservatives were evaluated to minimize metal oxyhydroxide precipitation, such as inorganic acids and ethylenediaminetetraacetic acid (EDTA). EDTA was found to work best for all sample matrices tested. Storing samples in opaque polyethylene bottles eliminated the effects of photochemical reactions. The preservation technique was tested on 71 groundwater and six acid mine drainage samples. Concentrations in groundwater samples reached 720 microg-As/L for arsenite and 1080 microg-As/L for arsenate, and acid mine drainage samples reached 13 000 microg-As/L for arsenite and 3700 microg-As/L for arsenate. The arsenic species distribution in the samples ranged from 0 to 90% arsenite. The stability of the preservation technique was established by comparing laboratory arsenic speciation results for samples preserved in the field to results for subsamples speciated onsite. Statistical analyses indicated that the difference between arsenite and arsenate concentrations for samples preserved with EDTA in opaque bottles and field speciation results were analytically insignificant. The percentage change in arsenite:arsenate ratios for a preserved acid mine drainage sample and groundwater sample during a 3-month period was -5 and +3%, respectively. PMID:12038832

  3. WELL CONSTRUCTION AND PURGING EFFECTS ON GROUND-WATER SAMPLES

    EPA Science Inventory

    Multiple well installations of selected casing materials (i.e., polytetrafluoroethylene (PTFE), 304 stainless steel (SS), and polyvinyl chloride (PVC)) were constructed and sampled to determine if well purging and construction procedures would significantly bias chemical constitu...

  4. Groundwater Monitoring and Field Sampling Plan for Operable Unit 10-08

    SciTech Connect

    M. S. Roddy

    2007-05-01

    This plan describes the groundwater sampling and water level monitoring that will be conducted to evaluate contaminations in the Snake River Plain Aquifer entering and leaving the Idaho National Laboratory. The sampling and monitoring locations were selected to meet the data quality objectives detailed in this plan. Data for the Snake River Plain Aquifer obtained under this plan will be evaluated in the Operable Unit 10-08 Remedial Investigation/Feasibility Study report and will be used to support the Operable Unit 10-08 Sitewide groundwater model.

  5. May 2011 Groundwater and Surface Water Sampling at the Rio Blanco, Colorado, Site (Data Validation Package)

    SciTech Connect

    2011-12-01

    Annual sampling was conducted at the Rio Blanco, Colorado, site for the Long-Term Hydrologic Monitoring Program May 16-17, 2011, to monitor groundwater and surface water for potential radionuclide contamination. Sampling and analyses were conducted as specified in Sampling and Analysis Plan for the U.S. Department of Energy Office of Legacy Management Sites (LMS/PRO/S04351, continually updated). A duplicate sample was collected from location Johnson Artesian WL. Samples were analyzed by the U.S. Environmental Protection Agency (EPA) Radiation&Indoor Environments National Laboratory in Las Vegas, Nevada. Samples were analyzed for gamma-emitting radionuclides by high-resolution gamma spectrometry, and for tritium using the conventional method. Tritium was not measured using the enrichment method because the EPA laboratory no longer offers that service. Results of this monitoring at the Rio Blanco site demonstrate that groundwater and surface water outside the boundaries have not been affected by project-related contaminants.

  6. An Automated Sample Divider for Farmers Stock Peanuts

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In-shell peanuts are harvested, loaded into drying trailers, and delivered to a central facility where they are dried to a moisture content safe for long term storage, sampled, graded, then unloaded into bulk storage. Drying trailers have capacities ranging from five to twenty-five tons of dry farme...

  7. Automated biowaste sampling system urine subsystem operating model, part 1

    NASA Technical Reports Server (NTRS)

    Fogal, G. L.; Mangialardi, J. K.; Rosen, F.

    1973-01-01

    The urine subsystem automatically provides for the collection, volume sensing, and sampling of urine from six subjects during space flight. Verification of the subsystem design was a primary objective of the current effort which was accomplished thru the detail design, fabrication, and verification testing of an operating model of the subsystem.

  8. Automated calculation of the evapotranspiration and crop coefficients for a large number of peatland sites using diurnal groundwater table fluctuations

    NASA Astrophysics Data System (ADS)

    Maurer, Eike; Bechtold, Michel; Dettmann, Ullrich; Tiemeyer, Bärbel

    2014-05-01

    Evapotranspiration is one of the main processes controlling peatland hydrology. Greenhouse gas (GHG) emissions from peatlands are in turn strongly controlled by the groundwater table. Through the increasing political and scientific interest to reduce GHG emissions, monitoring and modelling strategies to optimize re-wetting strategies and to quantify GHG emissions are needed. To achieve these aims, an accurate determination of the evapotranspiration as an essential part of the water balance is required. Many different approaches are known to determine the evapotranspiration. They are mostly either expensive or hard to parameterize. Plant specific crop coefficients (Kc-values) are an option to calculate plant-specific evapotranspiration but due to the lack of Kc-values for typical peatland vegetation types more data on evapotranspiration from peatlands in the temperate zone are required. Furthermore, simple methods to estimate evapotranspiration are needed especially for monitoring projects. Diurnal groundwater table fluctuations caused by root water uptake and groundwater inflow can be used to calculate daily evapotranspiration rates. This approach was first described by White (1932) who compared groundwater recovery rates at night to the decline during daytime. Besides the groundwater table data only the specific yield (Sy) is needed to calculate evapotranspiration. However, the method has some limitations because not all days can be evaluated which leads to data gaps during rainy and very dry or very wet periods. This study presents an automated method to calculate the specific yield, evapotranspiration and crop coefficients for a large number of sites covering all major peatland types and their typical land uses in Germany. As an input for our method, only groundwater level, precipitation and grass reference evapotranspiration (ET0) data is required. In a first step, the groundwater level data was smoothed by a LOESS function. In a second step, site-specific SY

  9. Aerobic biodegradation of vinyl chloride in groundwater samples

    SciTech Connect

    Davis, J.W.; Carpenter, C.L. )

    1990-12-01

    Studies were conducted to examine the biodegradation of {sup 14}C-labeled vinyl chloride in samples taken from a shallow aquifer. Under aerobic conditions, vinyl chloride was readily degraded, with greater than 99% of the labeled material being degraded after 108 days and approximately 65% being mineralized to {sup 14}CO{sub 2}.

  10. Automated sample mounting and alignment system for biological crystallography at a synchrotron source.

    PubMed

    Snell, Gyorgy; Cork, Carl; Nordmeyer, Robert; Cornell, Earl; Meigs, George; Yegian, Derek; Jaklevic, Joseph; Jin, Jian; Stevens, Raymond C; Earnest, Thomas

    2004-04-01

    High-throughput data collection for macromolecular crystallography requires an automated sample mounting and alignment system for cryo-protected crystals that functions reliably when integrated into protein-crystallography beamlines at synchrotrons. Rapid mounting and dismounting of the samples increases the efficiency of the crystal screening and data collection processes, where many crystals can be tested for the quality of diffraction. The sample-mounting subsystem has random access to 112 samples, stored under liquid nitrogen. Results of extensive tests regarding the performance and reliability of the system are presented. To further increase throughput, we have also developed a sample transport/storage system based on "puck-shaped" cassettes, which can hold sixteen samples each. Seven cassettes fit into a standard dry shipping Dewar. The capabilities of a robotic crystal mounting and alignment system with instrumentation control software and a relational database allows for automated screening and data collection to be developed. PMID:15062077

  11. Automated sample mounting and technical advance alignment system for biological crystallography at a synchrotron source

    SciTech Connect

    Snell, Gyorgy; Cork, Carl; Nordmeyer, Robert; Cornell, Earl; Meigs, George; Yegian, Derek; Jaklevic, Joseph; Jin, Jian; Stevens, Raymond C.; Earnest, Thomas

    2004-01-07

    High-throughput data collection for macromolecular crystallography requires an automated sample mounting system for cryo-protected crystals that functions reliably when integrated into protein-crystallography beamlines at synchrotrons. Rapid mounting and dismounting of the samples increases the efficiency of the crystal screening and data collection processes, where many crystals can be tested for the quality of diffraction. The sample-mounting subsystem has random access to 112 samples, stored under liquid nitrogen. Results of extensive tests regarding the performance and reliability of the system are presented. To further increase throughput, we have also developed a sample transport/storage system based on ''puck-shaped'' cassettes, which can hold sixteen samples each. Seven cassettes fit into a standard dry shipping Dewar. The capabilities of a robotic crystal mounting and alignment system with instrumentation control software and a relational database allows for automated screening and data collection to be developed.

  12. May 2012 Groundwater and Surface Water Sampling at the Rio Blanco, Colorado, Site (Data Validation Package)

    SciTech Connect

    2012-12-01

    Annual sampling was conducted at the Rio Blanco, Colorado, site for the Long-Term Hydrologic Monitoring Program May 9-10, 2012, to monitor groundwater and surface water for potential radionuclide contamination. Sampling and analyses were conducted as specified in Sampling and Analysis Plan for the U.S. Department of Energy Office of Legacy Management Sites (LMS/PRO/S04351, continually updated). A duplicate sample was collected from location Johnson Artesian WL. Samples were analyzed for gamma-emitting radionuclides by high-resolution gamma spectrometry and for tritium using the conventional and enrichment methods. Results of this monitoring at the Rio Blanco site demonstrate that groundwater and surface water outside the site boundaries have not been affected by project-related contaminants.

  13. Automated syringe sampler. [remote sampling of air and water

    NASA Technical Reports Server (NTRS)

    Purgold, G. C. (Inventor)

    1981-01-01

    A number of sampling services are disposed in a rack which slides into a housing. In response to a signal from an antenna, the circutry elements are activated which provide power individually, collectively, or selectively to a servomechanism thereby moving an actuator arm and the attached jawed bracket supporting an evaculated tube towards a stationary needle. One open end of the needle extends through the side wall of a conduit to the interior and the other open end is maintained within the protective sleeve, supported by a bifurcated bracket. A septum in punctured by the end of the needle within the sleeve and a sample of the fluid medium in the conduit flows through the needle and is transferred to a tube. The signal to the servo is then reversed and the actuator arm moves the tube back to its original position permitting the septum to expand and seal the hole made by the needle. The jawed bracket is attached by pivot to the actuator to facilitate tube replacement.

  14. Automated Sample Preparation for Radiogenic and Non-Traditional Metal Isotopes: Removing an Analytical Barrier for High Sample Throughput

    NASA Astrophysics Data System (ADS)

    Field, M. Paul; Romaniello, Stephen; Gordon, Gwyneth W.; Anbar, Ariel D.; Herrmann, Achim; Martinez-Boti, Miguel A.; Anagnostou, Eleni; Foster, Gavin L.

    2014-05-01

    MC-ICP-MS has dramatically improved the analytical throughput for high-precision radiogenic and non-traditional isotope ratio measurements, compared to TIMS. The generation of large data sets, however, remains hampered by tedious manual drip chromatography required for sample purification. A new, automated chromatography system reduces the laboratory bottle neck and expands the utility of high-precision isotope analyses in applications where large data sets are required: geochemistry, forensic anthropology, nuclear forensics, medical research and food authentication. We have developed protocols to automate ion exchange purification for several isotopic systems (B, Ca, Fe, Cu, Zn, Sr, Cd, Pb and U) using the new prepFAST-MC™ (ESI, Nebraska, Omaha). The system is not only inert (all-flouropolymer flow paths), but is also very flexible and can easily facilitate different resins, samples, and reagent types. When programmed, precise and accurate user defined volumes and flow rates are implemented to automatically load samples, wash the column, condition the column and elute fractions. Unattended, the automated, low-pressure ion exchange chromatography system can process up to 60 samples overnight. Excellent reproducibility, reliability, recovery, with low blank and carry over for samples in a variety of different matrices, have been demonstrated to give accurate and precise isotopic ratios within analytical error for several isotopic systems (B, Ca, Fe, Cu, Zn, Sr, Cd, Pb and U). This illustrates the potential of the new prepFAST-MC™ (ESI, Nebraska, Omaha) as a powerful tool in radiogenic and non-traditional isotope research.

  15. Groundwater sampling methods using glass wool filtration to trace human enteric viruses in Madison, Wisconsin

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Human enteric viruses have been detected in the Madison, Wisconsin deep municipal well system. Earlier projects by the Wisconsin Geological and Natural History Survey (WGNHS) have used glass wool filters to sample groundwater for these viruses directly from the deep municipal wells. Polymerase chain...

  16. Groundwater Sampling at ISCO Sites: Binary Mixtures of Volatile Organic Compounds and Persulfate

    EPA Science Inventory

    In-situ chemical oxidation involves the introduction of a chemical oxidant into the subsurface for the purpose of transforming ground-water contaminants into less harmful byproducts. Due to oxidant persistence, ground water samples collected at hazardous waste sites may contain o...

  17. An automated integrated platform for rapid and sensitive multiplexed protein profiling using human saliva samples

    PubMed Central

    Nie, Shuai; Henley, W. Hampton; Miller, Scott E.; Zhang, Huaibin; Mayer, Kathryn M.; Dennis, Patty J.; Oblath, Emily A.; Alarie, Jean Pierre; Wu, Yue; Oppenheim, Frank G.; Little, Frédéric F.; Uluer, Ahmet Z.; Wang, Peidong; Ramsey, J. Michael

    2014-01-01

    During the last decade, saliva has emerged as a potentially ideal diagnostic biofluid for noninvasive testing. In this paper, we present an automated, integrated platform useable by minimally trained personnel in the field for the diagnosis of respiratory diseases using human saliva as a sample specimen. In this platform, a saliva sample is loaded onto a disposable microfluidic chip containing all the necessary reagents and components required for saliva analysis. The chip is then inserted into the automated analyzer, the SDReader, where multiple potential protein biomarkers for respiratory diseases are measured simultaneously using a microsphere-based array via fluorescence sandwich immunoassays. The results are read optically, and the images are analyzed by a custom-designed algorithm. The fully automated assay requires as little as 10 μL of saliva sample, and the results are reported in 70 min. The performance of the platform was characterized by testing protein standard solutions, and the results were comparable to those from the 3.5-h lab bench assay that we have previously reported. The device was also deployed in two clinical environments where 273 human saliva samples collected from different subjects were successfully tested, demonstrating the device’s potential to assist clinicians with the diagnosis of respiratory diseases by providing timely protein biomarker profiling information. This platform, which combines non-invasive sample collection and fully automated analysis, can also be utilized in point-of-care diagnostics. PMID:24448498

  18. Landfill gas effects on groundwater samples at a municipal solid waste facility.

    PubMed

    Kerfoot, H B

    1994-11-01

    A study was performed to determine the source of low concentrations of volatile organic compounds (VOCs) detected in groundwater samples at a solid waste management facility. The affected wells were identified as hydraulically upgradient of an old unlined facility, but downgradient of a new clay-lined landfill. These monitoring wells are close to both sites. Subsurface landfill gas migration was identified after a low permeability cap was installed on the older site. Subsurface gas pressure was monitored to identify horizontal landfill gas migration. Monitoring well headspace gases were evaluated to identify depressed oxygen concentrations and methane because of landfill gas migration into the well. Monitoring well headspace gas VOC concentrations were compared to groundwater VOC concentrations to determine the direction of phase transfer. A ratio above 1.0 of the observed well headspace gas concentration of a VOC to the concentration that would be in equilibrium with the groundwater concentration indicates gas-to-water phase transfer within the well. For the major gas-phase and aqueous-phase VOC, cis-1,2-dichloroethene, gas-to-water phase transfer is clearly indicated from the data for two of the four wells. Fifteen other VOCs were detected in monitoring well headspace gases but not in groundwater samples from the four wells studied. Only one compound in one well was detected in the groundwater sample but not in the headspace gases, and only one compound in one well was detected in both matrices at concentrations that suggested water-to-gas phase transfer. This study suggests that if landfill gas is suspected as the source of detected VOCs, monitoring well construction and stratigraphy are important considerations when attempting to differentiate between groundwater contamination by landfill gas and contamination from other sources. PMID:15736343

  19. High-throughput sample processing and sample management; the functional evolution of classical cytogenetic assay towards automation.

    PubMed

    Ramakumar, Adarsh; Subramanian, Uma; Prasanna, Pataje G S

    2015-11-01

    High-throughput individual diagnostic dose assessment is essential for medical management of radiation-exposed subjects after a mass casualty. Cytogenetic assays such as the Dicentric Chromosome Assay (DCA) are recognized as the gold standard by international regulatory authorities. DCA is a multi-step and multi-day bioassay. DCA, as described in the IAEA manual, can be used to assess dose up to 4-6 weeks post-exposure quite accurately but throughput is still a major issue and automation is very essential. The throughput is limited, both in terms of sample preparation as well as analysis of chromosome aberrations. Thus, there is a need to design and develop novel solutions that could utilize extensive laboratory automation for sample preparation, and bioinformatics approaches for chromosome-aberration analysis to overcome throughput issues. We have transitioned the bench-based cytogenetic DCA to a coherent process performing high-throughput automated biodosimetry for individual dose assessment ensuring quality control (QC) and quality assurance (QA) aspects in accordance with international harmonized protocols. A Laboratory Information Management System (LIMS) is designed, implemented and adapted to manage increased sample processing capacity, develop and maintain standard operating procedures (SOP) for robotic instruments, avoid data transcription errors during processing, and automate analysis of chromosome-aberrations using an image analysis platform. Our efforts described in this paper intend to bridge the current technological gaps and enhance the potential application of DCA for a dose-based stratification of subjects following a mass casualty. This paper describes one such potential integrated automated laboratory system and functional evolution of the classical DCA towards increasing critically needed throughput. PMID:26520383

  20. Investigation of Automated Sampling Techniques to Measure Total Mercury in Stream- Water During Storm-Events

    NASA Astrophysics Data System (ADS)

    Riscassi, A. L.; Scanlon, T. M.

    2008-12-01

    High-flow events (storms and snowmelt) are a dominant transport mechanism for total mercury (HgT) from the terrestrial to the aqueous environment. High-gradient headwater catchments are a primary source of downstream contamination because they store large pools of Hg in soils and sediments. Consistent, high- frequency event-sampling of headwater streams is rare, however, because of the unpredictability of high flows, remoteness of sites, and the difficulties associated with the ultra-clean sampling procedures. The use of automated sampling techniques with an ISCO® sampler has been demonstrated in several studies for trace metals, but their use for collection of HgT samples has not been systematically evaluated in the literature. Even with clean equipment at deployment, subsequent contamination and loss by evasion are possible considering the bottles, as currently designed, are open to the atmosphere before sampling and until retrieval. Field tests are conducted using an ISCO® sampler retrofitted with pre- cleaned Teflon® sampling lines and glass bottles to determine the relative errors associated with the automated sampling method for a variety of HgT concentrations and preservation techniques. Differences between quality assurance and quality control results for automated and manual sampling are also investigated. Sample containers are filled with known standards of HgT solution and left in the ISCO® containers at the field site and each day (up to 7 days) are capped and returned for analysis. During a storm event, manual samples are taken from the middle of the water column concurrently with the ISCO® at hourly intervals using "clean hands" procedures. Evaluations of results are used to establish quality assurance guidelines for future field campaigns using automated techniques for HgT sampling.

  1. Rapid Quantification of Hepatitis B Virus DNA by Automated Sample Preparation and Real-Time PCR

    PubMed Central

    Stelzl, Evelyn; Muller, Zsofia; Marth, Egon; Kessler, Harald H.

    2004-01-01

    Monitoring of hepatitis B virus (HBV) DNA in serum by molecular methods has become the standard for assessment of the replicative activity of HBV. Several molecular assays for the detection and quantification of HBV DNA have been described. However, they usually lack automated sample preparation. Moreover, those assays, which are based on PCR, are limited by a short dynamic range (2 to 3 log units). In the present study, the use of RealArt HBV LC PCR Reagents in conjunction with automated extraction on the COBAS AMPLIPREP analyzer was evaluated. Members of an HBV proficiency program panel were tested; linearity, interassay, and intra-assay variations were determined. The performance of the assay in a routine clinical laboratory was evaluated with a total of 117 clinical specimens. When members of the HBV proficiency program panel were tested by the new molecular assay, the results were found to be within ±0.5 log unit of the results obtained by reference laboratories. Determination of linearity resulted in a quasilinear curve over more than 6 log units. The interassay variation of the RealArt HBV LC PCR Reagents by use of the automated sample preparation protocol ranged from 16 to 73%, and the intra-assay variation ranged from 9 to 40%. When clinical samples were tested by the new assay with the automated sample preparation protocol and the results were compared with those obtained by the COBAS AMPLICOR HBV MONITOR Test with manual sample preparation, the results for 76% of all samples with positive results by both tests were found to be within ±0.5 log unit and the results for another 18% were found to be within between 0.5 and 1.0 log unit. In conclusion, the real-time PCR assay with automated sample preparation proved to be suitable for the routine molecular laboratory and required less hands-on time. PMID:15184417

  2. Results of groundwater monitoring and vegetation sampling at Everest, Kansas, in 2009 .

    SciTech Connect

    LaFreniere, L. M.; Environmental Science Division

    2010-05-13

    In April 2008, the Commodity Credit Corporation of the U.S. Department of Agriculture (CCC/USDA) conducted groundwater sampling for the analysis of volatile organic compounds (VOCs) in the existing network of monitoring points at Everest, Kansas (Argonne 2008). The objective of the 2008 investigation was to monitor the distribution of carbon tetrachloride contamination in groundwater previously identified in CCC/USDA site characterization and groundwater sampling studies at Everest in 2000-2006 (Argonne 2001, 2003, 2006a,b). The work at Everest is being undertaken on behalf of the CCC/USDA by Argonne National Laboratory, under the oversight of the Kansas Department of Health and Environment (KDHE). The findings of the 2008 investigation were as follows: (1) Measurements of groundwater levels obtained manually and through the use of automatic recorders demonstrated a consistent pattern of groundwater flow - and inferred contaminant migration - to the north-northwest from the former CCC/USDA facility toward the Nigh property, and then west-southwest from the Nigh property toward the intermittent creek that lies west of the former CCC/USDA facility and the Nigh property. (2) The range of concentrations and the areal distribution of carbon tetrachloride identified in the groundwater at Everest in April 2008 were generally consistent with previous results. The results of the 2008 sampling (reflecting the period from 2006 to 2008) and the earlier investigations at Everest (representing the period from 2000 to 2006) show that no significant downgradient extension of the carbon tetrachloride plume occurred from 2000 to 2008. (3) The slow contaminant migration indicated by the monitoring data is qualitatively consistent with the low groundwater flow rates in the Everest aquifer unit estimated previously on the basis of site-specific hydraulic testing (Argonne 2006a,b). (4) The April 2008 and earlier sampling results demonstrate that the limits of the plume have been

  3. January 2012 Groundwater Sampling at the Gnome-Coach, New Mexico, Site (Data Validation Package)

    SciTech Connect

    2012-12-01

    Annual sampling was conducted January 18, 2012, to monitor groundwater for potential radionuclide contamination at the Gnome-Coach site in New Mexico. The sampling was performed as specified in the Sampling and Analysis Plan for U.S. Department of Energy Office of Legacy Management Sites (LMS/PLN/S04351, continually updated). Well LRL-7 was not sampled per instruction from the lead. A duplicate sample was collected from well USGS-1 and water levels were measured in the monitoring wells onsite.

  4. May 2013 Groundwater and Surface Water Sampling at the Rio Blanco, Colorado, Site (Data Validation Package)

    SciTech Connect

    2013-10-01

    Annual sampling was conducted at the Rio Blanco, Colorado, site for the Long-Term Hydrologic Monitoring Program May 14-16, 2013, to monitor groundwater and surface water for potential radionuclide contamination. Sampling and analyses were conducted as specified in Sampling and Analysis Plan for the U.S. Department of Energy Office of Legacy Management Sites (LMS/PRO/S04351, continually updated). A duplicate sample was collected from location CER #1 Black Sulphur. Samples were analyzed for gamma-emitting radionuclides by high-resolution gamma spectrometry and for tritium using the conventional and enrichment methods.

  5. Automated laboratory based X-ray beamline with multi-capillary sample chamber

    NASA Astrophysics Data System (ADS)

    Purushothaman, S.; Gauthé, B. L. L. E.; Brooks, N. J.; Templer, R. H.; Ces, O.

    2013-08-01

    An automated laboratory based X-ray beamline with a multi-capillary sample chamber capable of undertaking small angle X-ray scattering measurements on a maximum of 104 samples at a time as a function of temperature between 5 and 85 °C has been developed. The modular format of the system enables the user to simultaneously equilibrate samples at eight different temperatures with an accuracy of ±0.005 °C. This system couples a rotating anode generator and 2D optoelectronic detector with Franks X-ray optics, leading to typical exposure times of less than 5 min for lyotropic liquid crystalline samples. Beamline control including sample exchange and data acquisition has been fully automated via a custom designed LabVIEW framework.

  6. Automated laboratory based X-ray beamline with multi-capillary sample chamber

    SciTech Connect

    Purushothaman, S.; Gauthé, B. L. L. E.; Brooks, N. J.; Templer, R. H.; Ces, O.

    2013-08-15

    An automated laboratory based X-ray beamline with a multi-capillary sample chamber capable of undertaking small angle X-ray scattering measurements on a maximum of 104 samples at a time as a function of temperature between 5 and 85 °C has been developed. The modular format of the system enables the user to simultaneously equilibrate samples at eight different temperatures with an accuracy of ±0.005 °C. This system couples a rotating anode generator and 2D optoelectronic detector with Franks X-ray optics, leading to typical exposure times of less than 5 min for lyotropic liquid crystalline samples. Beamline control including sample exchange and data acquisition has been fully automated via a custom designed LabVIEW framework.

  7. Development and calibration of a portable radon sampling system for groundwater 222Rn activity concentration measurements.

    PubMed

    Lucas, Fabio de Oliveira; de Oliveira, Igor José Chaves; Ribeiro, Fernando Brenha

    2009-10-01

    The assembling of a system for field sampling and activity concentration measurement of radon dissolved in groundwater is described. Special attention is given in presenting the calibration procedure to obtain the radon activity concentration in groundwater from the raw counting rate registered in a portable scintillation detector and in establishing the precision of the activity concentration measurements. A field procedure was established and the system tested during one year of monthly observations of (222)Rn activity concentration in groundwater drawn from two wells drilled on metamorphic rocks exposed at Eastern São Paulo State, Brazil. The observed mean (222)Rn activity concentrations are 374Bq/dm(3) in one well and about 1275Bq/dm(3) in the other one. In both wells the (222)Rn activity concentrations showed a seasonal variation similar to variations previously reported in the literature for the same region. PMID:19608307

  8. An automated system for global atmospheric sampling using B-747 airliners

    NASA Technical Reports Server (NTRS)

    Lew, K. Q.; Gustafsson, U. R. C.; Johnson, R. E.

    1981-01-01

    The global air sampling program utilizes commercial aircrafts in scheduled service to measure atmospheric constituents. A fully automated system designed for the 747 aircraft is described. Airline operational constraints and data and control subsystems are treated. The overall program management, system monitoring, and data retrieval from four aircraft in global service is described.

  9. Automated gas sampling system for laboratory analysis of CH4 and N2O

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Analyzing the flux of CH4 and N2O from soil is labor intensive when conventional hand injection techniques are utilized in gas chromatography. An automated gas sampling system was designed and assembled from a prototype developed at the National Soil Tilth Laboratory in Ames, Iowa. The sampler was e...

  10. The stability of chlorofluorocarbons (CFCs) in ground-water samples archived in borosilicate ampoules

    USGS Publications Warehouse

    Shapiro, Stephanie Dunkle; Busenberg, Eurybiades; Plummer, L. Niel

    2005-01-01

    The U.S. Geological Survey (USGS) Chlorofluorocarbon (CFC) Laboratory in Reston, Va., has been measuring concentrations of CFCs in ground-water samples since 1989 to estimate the year that a water sample was recharged to a ground-water flow system. The water samples have been collected in flame-sealed borosilicate ampoules. Typically for each site, three samples were analyzed within days to a few months after collection, and additional samples were archived for extended periods of time (up to four years). The stability of CFC concentrations in the archived water samples from the USGS CFC Laboratory was investigated by analyzing the CFC concentrations in archived water samples and comparing them with the CFC concentrations that were obtained soon after the samples were collected. The archived samples selected for analysis were chosen from sites with a wide variety of hydrogeologic and geochemical conditions. For CFC-11 and CFC-12 concentrations, approximately 14% and 10.5%, respectively, of the archived samples were statistically different (both higher and lower) from the concentrations obtained from analyses conducted soon after the sample collection. Most of the extraneous values were attributed to natural variability of CFC concentrations originally in the water discharged from wells, rather than to microbial degradation within the ampoule on storage.

  11. Recent developments on field gas extraction and sample preparation methods for radiokrypton dating of groundwater

    NASA Astrophysics Data System (ADS)

    Yokochi, Reika

    2016-09-01

    Current and foreseen population growths will lead to an increased demand in freshwater, large quantities of which is stored as groundwater. The ventilation age is crucial to the assessment of groundwater resources, complementing the hydrological model approach based on hydrogeological parameters. Ultra-trace radioactive isotopes of Kr (81 Kr and 85 Kr) possess the ideal physical and chemical properties for groundwater dating. The recent advent of atom trap trace analyses (ATTA) has enabled determination of ultra-trace noble gas radioisotope abundances using 5-10 μ L of pure Kr. Anticipated developments will enable ATTA to analyze radiokrypton isotope abundances at high sample throughput, which necessitates simple and efficient sample preparation techniques that are adaptable to various sample chemistries. Recent developments of field gas extraction devices and simple and rapid Kr separation method at the University of Chicago are presented herein. Two field gas extraction devices optimized for different sampling conditions were recently designed and constructed, aiming at operational simplicity and portability. A newly developed Kr purification system enriches Kr by flowing a sample gas through a moderately cooled (138 K) activated charcoal column, followed by a gentle fractionating desorption. This simple process uses a single adsorbent and separates 99% of the bulk atmospheric gases from Kr without significant loss. The subsequent two stages of gas chromatographic separation and a hot Ti sponge getter further purify the Kr-enriched gas. Abundant CH4 necessitates multiple passages through one of the gas chromatographic separation columns. The presented Kr separation system has a demonstrated capability of extracting Kr with > 90% yield and 99% purity within 75 min from 1.2 to 26.8 L STP of atmospheric air with various concentrations of CH4. The apparatuses have successfully been deployed for sampling in the field and purification of groundwater samples.

  12. Data validation report for the 100-HR-3 Operable Unit first quarter 1994 groundwater sampling data

    SciTech Connect

    Biggerstaff, R.L.

    1994-06-24

    Westinghouse-Hanford has requested that a minimum of 20% of the total number of Sample Delivery Groups be validated for the 100-HR-3 Operable Unit First Quarter 1994 Groundwater Sampling Investigation. Therefore, the data from the chemical analysis of twenty-four samples from this sampling event and their related quality assurance samples were reviewed and validated to verify that reported sample results were of sufficient quality to support decisions regarding remedial actions performed at this site. The samples were analyzed by Thermo-Analytic Laboratories (TMA) and Roy F. Weston Laboratories (WESTON) using US Environmental Protection Agency (EPA) CLP protocols. Sample analyses included: inorganics; and general chemical parameters. Forty-two samples were validated for radiochemical parameters by TMA and Teledyne.

  13. Fully Automated Sample Preparation for Ultrafast N-Glycosylation Analysis of Antibody Therapeutics.

    PubMed

    Szigeti, Marton; Lew, Clarence; Roby, Keith; Guttman, Andras

    2016-04-01

    There is a growing demand in the biopharmaceutical industry for high-throughput, large-scale N-glycosylation profiling of therapeutic antibodies in all phases of product development, but especially during clone selection when hundreds of samples should be analyzed in a short period of time to assure their glycosylation-based biological activity. Our group has recently developed a magnetic bead-based protocol for N-glycosylation analysis of glycoproteins to alleviate the hard-to-automate centrifugation and vacuum-centrifugation steps of the currently used protocols. Glycan release, fluorophore labeling, and cleanup were all optimized, resulting in a <4 h magnetic bead-based process with excellent yield and good repeatability. This article demonstrates the next level of this work by automating all steps of the optimized magnetic bead-based protocol from endoglycosidase digestion, through fluorophore labeling and cleanup with high-throughput sample processing in 96-well plate format, using an automated laboratory workstation. Capillary electrophoresis analysis of the fluorophore-labeled glycans was also optimized for rapid (<3 min) separation to accommodate the high-throughput processing of the automated sample preparation workflow. Ultrafast N-glycosylation analyses of several commercially relevant antibody therapeutics are also shown and compared to their biosimilar counterparts, addressing the biological significance of the differences. PMID:26429557

  14. Plan for Using Solar-Powered Jack Pumps to Sample Groundwater at the Nevada Test Site

    SciTech Connect

    David Hudson, Charles Lohrstorfer, Bruce Hurley

    2007-05-03

    Groundwater is sampled from 39 monitoring wells on the Nevada Test Site (NTS) as part of the Routine Radiological Environmental Monitoring Program. Many of these wells were not designed or constructed for long-term groundwater monitoring. Some have extensive completion zones and others have obstructions such as pumps and tubing. The high-volume submersible pumps in some wells are unsuitable for long-term monitoring and result in large volumes of water that may have to be contained and characterized before subsequent disposition. The configuration of most wells requires sampling stagnant well water with a wireline bailer. Although bailer sampling allows for the collection of depth-discrete samples, the collected samples may not be representative of local groundwater because no well purging is done. Low-maintenance, solar-powered jack pumps will be deployed in nine of these onsite monitoring wells to improve sample quality. These pumps provide the lift capacity to produce groundwater from the deep aquifers encountered in the arid environment of the NTS. The water depths in these wells range from 700 to 2,340 ft below ground surface. The considerable labor and electrical power requirements of electric submersible pumps are eliminated once these pumps are installed. Access tubing will be installed concurrent with the installation of the pump string to provide downhole access for water-level measurements or other wireline instruments. Micro-purge techniques with low pump rates will be used to minimize purge volumes and reduce hydraulic gradients. The set depths of the pumps will be determined by the borehole characteristics and screened interval.

  15. Analysis of volatile organic compounds in groundwater samples by gas chromatography-mass spectrometry

    SciTech Connect

    Bernhardt, J.

    1995-08-23

    The Savannah River Site contains approximately 1500 monitoring wells from which groundwater samples are collected. Many of these samples are sent off-site for various analyses, including the determination of trace volatile organic compounds (VOCs). This report describes accomplishments that have been made during the past year which will ultimately allow VOC analysis to be performed on-site using gas chromatography-mass spectrometry. Through the use of the on-site approach, it is expected that there will be a substantial cost savings. This approach will also provide split-sample analysis capability which can serve as a quality control measure for off-site analysis.

  16. Groundwater transit time distribution and mean from streambed sampling in an agricultural coastal plain watershed, North Carolina, USA

    NASA Astrophysics Data System (ADS)

    Gilmore, Troy E.; Genereux, David P.; Solomon, D. Kip; Solder, John E.

    2016-03-01

    We measured groundwater apparent age (τ) and seepage rate (v) in a sandy streambed using point-scale sampling and seepage blankets (a novel seepage meter). We found very similar MTT estimates from streambed point sampling in a 58 m reach (29 years) and a 2.5 km reach (31 years). The TTD for groundwater discharging to the stream was best fit by a gamma distribution model and was very similar for streambed point sampling in both reaches. Between adjacent point-scale and seepage blanket samples, water from the seepage blankets was generally younger, largely because blanket samples contained a fraction of "young" stream water. Correcting blanket data for the stream water fraction brought τ estimates for most blanket samples closer to those for adjacent point samples. The MTT estimates from corrected blanket data were in good agreement with those from sampling streambed points adjacent to the blankets. Collectively, agreement among age-dating tracers, general accord between tracer data and piston-flow model curves, and large groundwater age gradients in the streambed, suggested that the piston flow apparent ages were reasonable estimates of the groundwater transit times for most samples. Overall, our results from two field campaigns suggest that groundwater collected in the streambed can provide reasonable estimates of apparent age of groundwater discharge, and that MTT can be determined from different age-dating tracers and by sampling with different groundwater collection devices. Coupled streambed point measurements of groundwater age and groundwater seepage rate represent a novel, reproducible, and effective approach to estimating aquifer TTD and MTT.

  17. Enumeration of Clostridium perfringens spores in groundwater samples: comparison of six culture media.

    PubMed

    Araujo, M; Sueiro, R A; Gómez, M J; Garrido, M J

    2004-05-01

    In order to investigate the ability of Fluorocult-supplemented TSC agar (TSCF (Fluorocult supplemented TSC-agar): prepared from Tryptose Sulfite Cycloserine Agar Base (Merck), D-cycloserine (Fluka Chemika, USA), and fluorocult TSC-Agar supplement (Merck)) for detecting spores of Clostridium perfringens in water, we analyzed groundwater samples, pretreated by heating to 80 degrees C/5 min, using this fluorogenic medium together with five other media: mCP agar (Panreac; Cultimed), TSC agar (Merck, Germany), TSN agar (Merck), and SPS agar (BBL, USA) by the membrane filtration technique, and Wilson-Blair agar (WB) following the still-in-force Spanish official method. Variance analysis of the data obtained shows statistically significant differences in the counts obtained between media employed in this work. The C. perfringens spore counts on mCP agar were significantly lower (P<0.05) than the corresponding values of TSC, TSCF, SPS, and WB media. No statistically significant differences were found between C. perfringens spore counts on TSCF compared with those of other methods used. On the other hand, the identification of typical and atypical colonies isolated from all media demonstrated that fluorogenic TSC agar was the most specific medium for C. perfringens spore recovery in groundwater samples. Additionally, the results obtained indicate that mCP agar, which is the reference method in the European Union, is not suitable medium for recovering C. perfringens spores from groundwater samples. PMID:15063057

  18. Automated semiquantitative direct-current-arc spectrographic analysis of eight argonne premium coal ash samples

    USGS Publications Warehouse

    Skeen, C.J.; Libby, B.J.; Crandell, W.B.

    1990-01-01

    The automated semiquantitative direct-current-arc spectre-graphic method was used to analyze 62 elements in eight Argonne Premium Coal Ash samples. All eight coal ash samples were analyzed in triplicate to verify precision and accuracy of the method. The precision for most elements was within ??10%. The accuracy of this method is limited to +50% or -33% because of the nature of the standard curves for each of the elements. Adjustments to the computer program were implemented to account for unique matrix interferences in these particular coal ash samples.

  19. Y-12 Groundwater Protection Program Groundwater And Surface Water Sampling And Analysis Plan For Calendar Year 2014

    SciTech Connect

    2013-09-01

    This plan provides a description of the groundwater and surface water quality monitoring activities planned for calendar year (CY) 2014 at the U.S. Department of Energy (DOE) Y-12 National Security Complex (Y-12) that will be managed by the Y-12 Groundwater Protection Program (GWPP). Groundwater and surface water monitoring is performed by the GWPP during CY 2014 to achieve the following goals: 􀁸 to protect the worker, the public, and the environment; 􀁸 to maintain surveillance of existing and potential groundwater contamination sources; 􀁸 to provide for the early detection of groundwater contamination and determine the quality of groundwater and surface water where contaminants are most likely to migrate beyond the Oak Ridge Reservation property line; 􀁸 to identify and characterize long-term trends in groundwater quality at Y-12; and 􀁸 to provide data to support decisions concerning the management and protection of groundwater resources. Groundwater and surface water monitoring will be performed in three hydrogeologic regimes at Y-12.

  20. Groundwater baseline sampling programs designed to identify potential leakage from unconventional gas plays in Alberta, Canada

    NASA Astrophysics Data System (ADS)

    Mayer, B.; Humez, P.; Ing, J.; Nightingale, M.

    2014-12-01

    With the rapid expansion of natural gas exploitation from unconventional reservoirs including coalbed methane and shale gas plays, there is significant public concern about potential future contamination of shallow potable groundwater with stray gases, formation waters or chemicals used during hydraulic fracturing. In order to enable a scientifically sound assessment of potential future deterioration of freshwater resources in shallow aquifers, it is essential to first establish and understand the current baseline of groundwater quality including its dissolved or free gases. Since 2006, we have conducted monitoring programs determining the chemical and isotopic compositions of water, its dissolved constituents, and of gases obtained from shallow groundwater and formation fluids collected from coalbed methane and shale gas plays in Western Canada. For groundwater samples, we placed special emphasis on determining the sources of dissolved and free gases using isotope techniques to assess whether gases produced from shale gas plays or potentially leaking from the intermediate zone are isotopically distinct from those in shallow aquifers. Methane and ethane in free gas samples obtained from shallow aquifers (n = 24) were found to have mean δ13C values of -72.4 ‰ and -50.2 ‰, respectively. These values are markedly different from the much higher δ13C values of methane and ethane in deeper portions of the Western Canadian Sedimentary Basin and in shale gas plays. Therefore, it appears highly feasible to identify potential gas leakage from unconventional gas plays provided that baseline data for shallow groundwater have been determined. Repeat baseline sampling of free gas from selected wells revealed a comparatively low variability of δ13C values of methane and ethane of usually < 2 ‰ over periods of several years, suggesting that it is not necessary to conduct baseline analyses more than three times. Also, δ13C values of methane in free gas samples and

  1. Functional Profiling of Live Melanoma Samples Using a Novel Automated Platform

    PubMed Central

    Schayowitz, Adam; Bertenshaw, Greg; Jeffries, Emiko; Schatz, Timothy; Cotton, James; Villanueva, Jessie; Herlyn, Meenhard; Krepler, Clemens; Vultur, Adina; Xu, Wei; Yu, Gordon H.; Schuchter, Lynn; Clark, Douglas P.

    2012-01-01

    Aims This proof-of-concept study was designed to determine if functional, pharmacodynamic profiles relevant to targeted therapy could be derived from live human melanoma samples using a novel automated platform. Methods A series of 13 melanoma cell lines was briefly exposed to a BRAF inhibitor (PLX-4720) on a platform employing automated fluidics for sample processing. Levels of the phosphoprotein p-ERK in the mitogen-activated protein kinase (MAPK) pathway from treated and untreated sample aliquots were determined using a bead-based immunoassay. Comparison of these levels provided a determination of the pharmacodynamic effect of the drug on the MAPK pathway. A similar ex vivo analysis was performed on fine needle aspiration (FNA) biopsy samples from four murine xenograft models of metastatic melanoma, as well as 12 FNA samples from patients with metastatic melanoma. Results Melanoma cell lines with known sensitivity to BRAF inhibitors displayed marked suppression of the MAPK pathway in this system, while most BRAF inhibitor-resistant cell lines showed intact MAPK pathway activity despite exposure to a BRAF inhibitor (PLX-4720). FNA samples from melanoma xenografts showed comparable ex vivo MAPK activity as their respective cell lines in this system. FNA samples from patients with metastatic melanoma successfully yielded three categories of functional profiles including: MAPK pathway suppression; MAPK pathway reactivation; MAPK pathway stimulation. These profiles correlated with the anticipated MAPK activity, based on the known BRAF mutation status, as well as observed clinical responses to BRAF inhibitor therapy. Conclusion Pharmacodynamic information regarding the ex vivo effect of BRAF inhibitors on the MAPK pathway in live human melanoma samples can be reproducibly determined using a novel automated platform. Such information may be useful in preclinical and clinical drug development, as well as predicting response to targeted therapy in individual patients

  2. Non-Uniform Sampling and J-UNIO Automation for Efficient Protein NMR Structure Determination.

    PubMed

    Didenko, Tatiana; Proudfoot, Andrew; Dutta, Samit Kumar; Serrano, Pedro; Wüthrich, Kurt

    2015-08-24

    High-resolution structure determination of small proteins in solution is one of the big assets of NMR spectroscopy in structural biology. Improvements in the efficiency of NMR structure determination by advances in NMR experiments and automation of data handling therefore attracts continued interest. Here, non-uniform sampling (NUS) of 3D heteronuclear-resolved [(1)H,(1)H]-NOESY data yielded two- to three-fold savings of instrument time for structure determinations of soluble proteins. With the 152-residue protein NP_372339.1 from Staphylococcus aureus and the 71-residue protein NP_346341.1 from Streptococcus pneumonia we show that high-quality structures can be obtained with NUS NMR data, which are equally well amenable to robust automated analysis as the corresponding uniformly sampled data. PMID:26227870

  3. Electrothermal Fluid Manipulation of High-Conductivity Samples for Laboratory Automation Applications

    PubMed Central

    Sin, Mandy L. Y.; Gau, Vincent; Liao, Joseph C.; Wong, Pak Kin

    2010-01-01

    Electrothermal flow is a promising technique in microfluidic manipulation toward laboratory automation applications, such as clinical diagnostics and high throughput drug screening. Despite the potential of electrothermal flow in biomedical applications, relative little is known about electrothermal manipulation of highly conductive samples, such as physiological fluids and buffer solutions. In this study, the characteristics and challenges of electrothermal manipulation of fluid samples with different conductivities were investigated systematically. Electrothermal flow was shown to create fluid motion for samples with a wide range of conductivity when the driving frequency was above 100 kHz. For samples with low conductivities (below 1 S/m), the characteristics of the electrothermal fluid motions were in quantitative agreement with the theory. For samples with high conductivities (above 1 S/m), the fluid motion appeared to deviate from the model as a result of potential electrochemical reactions and other electrothermal effects. These effects should be taken into consideration for electrothermal manipulation of biological samples with high conductivities. This study will provide insights in designing microfluidic devices for electrokinetic manipulation of biological samples toward laboratory automation applications in the future. PMID:21180401

  4. An experiment in representative ground-water sampling for water- quality analysis

    USGS Publications Warehouse

    Huntzinger, T.L.; Stullken, L.E.

    1988-01-01

    Obtaining a sample of groundwater that accurately represents the concentration of a chemical constituent in an aquifer is an important aspect of groundwater-quality studies. Varying aquifer and constituent properties may cause chemical constituents to move within selectively separate parts of the aquifer. An experiment was conducted in an agricultural region in south-central Kansas to address questions related to representative sample collection. Concentrations of selected constituents in samples taken from observation wells completed in the upper part of the aquifer were compared to concentrations in samples taken from irrigation wells to determine if there was a significant difference. Water in all wells sampled was a calcium bicarbonate type with more than 200 mg/L hardness and about 200 mg/L alkalinity. Sodium concentrations were also quite large (about 40 mg/L). There was a significant difference in the nitrite-plus-nitrate concentrations between samples from observation and irrigation wells. The median concentration of nitrite plus nitrate in water from observation wells was 5.7 mg/L compared to 3.4 mg/L in water from irrigation wells. The differences in concentrations of calcium, magnesium, and sodium (larger in water from irrigation wells) were significant at the 78% confidence level but not at the 97% confidence level. Concentrations of the herbicide, atrazine, were less than the detection limit of 0.1 micrograms/L in all but one well. (USGS)

  5. Environmental forensics in groundwater coupling passive sampling and high resolution mass spectrometry for screening.

    PubMed

    Soulier, Coralie; Coureau, Charlotte; Togola, Anne

    2016-09-01

    One of the difficulties encountered when monitoring groundwater quality is low and fluctuating concentration levels and complex mixtures of micropollutants, including emerging substances or transformation products. Combining passive sampling techniques with analysis by high resolution mass spectrometry (HRMS) should improve environmental metrology. Passive samplers accumulate compounds during exposure, which improves the detection of organic compounds and integrates pollution fluctuations. The Polar Organic Chemical Integrative Sampler (POCIS) were used in this study to sequester polar to semi-polar compounds. The methodology described here improves our knowledge of environmental pollution by highlighting and identifying pertinent compounds to be monitored in groundwater. The advantage of combining these two approaches is demonstrated on two different sites impacted by agricultural and/or urban pollution sources where groundwater was sampled for several months. Grab and passive sampling were done and analyzed by liquid chromatography coupled to a hybrid quadrupole time-of-flight mass spectrometer (LC-QTOF). Various data processing approaches were used (target, suspect and non-target screening). Target screening was based on research from compounds listed in a homemade database and suspect screening used a database compiled using literature data. The non-target screening was done using statistical tools such as principal components analysis (PCA) with direct connections between original chromatograms and ion intensity. Trend plots were used to highlight relevant compounds for their identification. The advantage of using POCIS to improve screening of polar organic compounds was demonstrated. Compounds undetected in water samples were detected with these tools. The subsequent data processing identified sentinel molecules, molecular clusters as compounds never revealed in these sampling sites, and molecular fingerprints. Samples were compared and multidimensional

  6. Development of automated preparation system for isotopocule analysis of N2O in various air samples

    NASA Astrophysics Data System (ADS)

    Toyoda, Sakae; Yoshida, Naohiro

    2016-05-01

    Nitrous oxide (N2O), an increasingly abundant greenhouse gas in the atmosphere, is the most important stratospheric ozone-depleting gas of this century. Natural abundance ratios of isotopocules of N2O, NNO molecules substituted with stable isotopes of nitrogen and oxygen, are a promising index of various sources or production pathways of N2O and of its sink or decomposition pathways. Several automated methods have been reported to improve the analytical precision for the isotopocule ratio of atmospheric N2O and to reduce the labor necessary for complicated sample preparation procedures related to mass spectrometric analysis. However, no method accommodates flask samples with limited volume or pressure. Here we present an automated preconcentration system which offers flexibility with respect to the available gas volume, pressure, and N2O concentration. The shortest processing time for a single analysis of typical atmospheric sample is 40 min. Precision values of isotopocule ratio analysis are < 0.1 ‰ for δ15Nbulk (average abundances of 14N15N16O and 15N14N16O relative to 14N14N16O), < 0.2 ‰ for δ18O (relative abundance of 14N14N18O), and < 0.5 ‰ for site preference (SP; difference between relative abundance of 14N15N16O and 15N14N16O). This precision is comparable to that of other automated systems, but better than that of our previously reported manual measurement system.

  7. Multiplexed NMR: An Automated CapNMR Dual-Sample Probe

    PubMed Central

    Norcross, James A.; Milling, Craig T.; Olson, Dean L.; Xu, Duanxiang; Audrieth, Anthony; Albrecht, Robert; Ruan, Ke; Likos, John; Jones, Claude; Peck, Timothy L.

    2010-01-01

    A new generation of micro-scale, nuclear magnetic resonance (CapNMR™) probe technology employs two independent detection elements to accommodate two samples simultaneously. Each detection element in the Dual-Sample CapNMR Probe (DSP) delivers the same spectral resolution and S/N as in a CapNMR probe configured to accommodate one sample at a time. A high degree of electrical isolation allows the DSP to be used in a variety of data acquisition modes. Both samples are shimmed simultaneously to achieve high spectral resolution for simultaneous data acquisition, or alternatively, a flowcell-specific shim set is readily called via spectrometer subroutines to enable acquisition from one sample while the other is being loaded. An automation system accommodates loading of two samples via dual injection ports on an autosampler and two completely independent flowpaths leading to dedicated flowcells in the DSP probe. PMID:20681560

  8. Selection of Sampling Pumps Used for Groundwater Monitoring at the Hanford Site

    SciTech Connect

    Schalla, Ronald; Webber, William D.; Smith, Ronald M.

    2001-11-05

    The variable frequency drive centrifugal submersible pump, Redi-Flo2a made by Grundfosa, was selected for universal application for Hanford Site groundwater monitoring. Specifications for the selected pump and five other pumps were evaluated against current and future Hanford groundwater monitoring performance requirements, and the Redi-Flo2 was selected as the most versatile and applicable for the range of monitoring conditions. The Redi-Flo2 pump distinguished itself from the other pumps considered because of its wide range in output flow rate and its comparatively moderate maintenance and low capital costs. The Redi-Flo2 pump is able to purge a well at a high flow rate and then supply water for sampling at a low flow rate. Groundwater sampling using a low-volume-purging technique (e.g., low flow, minimal purge, no purge, or micropurgea) is planned in the future, eliminating the need for the pump to supply a high-output flow rate. Under those conditions, the Well Wizard bladder pump, manufactured by QED Environmental Systems, Inc., may be the preferred pump because of the lower capital cost.

  9. Selection of Sampling Pumps Used for Groundwater Monitoring at the Hanford Site

    SciTech Connect

    Schalla, Ronald; Webber, William D; Smith, Ronald M

    2001-11-05

    The variable frequency drive centrifugal submersible pump, Redi-Flo2a made by Grundfosa, was selected for universal application for Hanford Site groundwater monitoring. Specifications for the selected pump and five other pumps were evaluated against current and future Hanford groundwater monitoring performance requirements, and the Redi-Flo2 was selected as the most versatile and applicable for the range of monitoring conditions. The Redi-Flo2 pump distinguished itself from the other pumps considered because of its wide range in output flow rate and its comparatively moderate maintenance and low capital costs. The Redi-Flo2 pump is able to purge a well at a high flow rate and then supply water for sampling at a low flow rate. Groundwater sampling using a low-volume-purging technique (e.g., low flow, minimal purge, no purge, or micropurges) is planned in the future, eliminating the need for the pump to supply a high-output flow rate. Under those conditions, the Well Wizard bladder pump, manufactured by QED Environmental Systems, Inc., may be the preferred pump because of the lower capital cost.

  10. Automated Prediction of Catalytic Mechanism and Rate Law Using Graph-Based Reaction Path Sampling.

    PubMed

    Habershon, Scott

    2016-04-12

    In a recent article [ J. Chem. Phys. 2015 , 143 , 094106 ], we introduced a novel graph-based sampling scheme which can be used to generate chemical reaction paths in many-atom systems in an efficient and highly automated manner. The main goal of this work is to demonstrate how this approach, when combined with direct kinetic modeling, can be used to determine the mechanism and phenomenological rate law of a complex catalytic cycle, namely cobalt-catalyzed hydroformylation of ethene. Our graph-based sampling scheme generates 31 unique chemical products and 32 unique chemical reaction pathways; these sampled structures and reaction paths enable automated construction of a kinetic network model of the catalytic system when combined with density functional theory (DFT) calculations of free energies and resultant transition-state theory rate constants. Direct simulations of this kinetic network across a range of initial reactant concentrations enables determination of both the reaction mechanism and the associated rate law in an automated fashion, without the need for either presupposing a mechanism or making steady-state approximations in kinetic analysis. Most importantly, we find that the reaction mechanism which emerges from these simulations is exactly that originally proposed by Heck and Breslow; furthermore, the simulated rate law is also consistent with previous experimental and computational studies, exhibiting a complex dependence on carbon monoxide pressure. While the inherent errors of using DFT simulations to model chemical reactivity limit the quantitative accuracy of our calculated rates, this work confirms that our automated simulation strategy enables direct analysis of catalytic mechanisms from first principles. PMID:26938837

  11. RoboDiff: combining a sample changer and goniometer for highly automated macromolecular crystallography experiments.

    PubMed

    Nurizzo, Didier; Bowler, Matthew W; Caserotto, Hugo; Dobias, Fabien; Giraud, Thierry; Surr, John; Guichard, Nicolas; Papp, Gergely; Guijarro, Matias; Mueller-Dieckmann, Christoph; Flot, David; McSweeney, Sean; Cipriani, Florent; Theveneau, Pascal; Leonard, Gordon A

    2016-08-01

    Automation of the mounting of cryocooled samples is now a feature of the majority of beamlines dedicated to macromolecular crystallography (MX). Robotic sample changers have been developed over many years, with the latest designs increasing capacity, reliability and speed. Here, the development of a new sample changer deployed at the ESRF beamline MASSIF-1 (ID30A-1), based on an industrial six-axis robot, is described. The device, named RoboDiff, includes a high-capacity dewar, acts as both a sample changer and a high-accuracy goniometer, and has been designed for completely unattended sample mounting and diffraction data collection. This aim has been achieved using a high level of diagnostics at all steps of the process from mounting and characterization to data collection. The RoboDiff has been in service on the fully automated endstation MASSIF-1 at the ESRF since September 2014 and, at the time of writing, has processed more than 20 000 samples completely automatically. PMID:27487827

  12. Electrochemical pesticide detection with AutoDip--a portable platform for automation of crude sample analyses.

    PubMed

    Drechsel, Lisa; Schulz, Martin; von Stetten, Felix; Moldovan, Carmen; Zengerle, Roland; Paust, Nils

    2015-02-01

    Lab-on-a-chip devices hold promise for automation of complex workflows from sample to answer with minimal consumption of reagents in portable devices. However, complex, inhomogeneous samples as they occur in environmental or food analysis may block microchannels and thus often cause malfunction of the system. Here we present the novel AutoDip platform which is based on the movement of a solid phase through the reagents and sample instead of transporting a sequence of reagents through a fixed solid phase. A ball-pen mechanism operated by an external actuator automates unit operations such as incubation and washing by consecutively dipping the solid phase into the corresponding liquids. The platform is applied to electrochemical detection of organophosphorus pesticides in real food samples using an acetylcholinesterase (AChE) biosensor. Minimal sample preparation and an integrated reagent pre-storage module hold promise for easy handling of the assay. Detection of the pesticide chlorpyrifos-oxon (CPO) spiked into apple samples at concentrations of 10(-7) M has been demonstrated. This concentration is below the maximum residue level for chlorpyrifos in apples defined by the European Commission. PMID:25415182

  13. RoboDiff: combining a sample changer and goniometer for highly automated macromolecular crystallography experiments

    PubMed Central

    Nurizzo, Didier; Bowler, Matthew W.; Caserotto, Hugo; Dobias, Fabien; Giraud, Thierry; Surr, John; Guichard, Nicolas; Papp, Gergely; Guijarro, Matias; Mueller-Dieckmann, Christoph; Flot, David; McSweeney, Sean; Cipriani, Florent; Theveneau, Pascal; Leonard, Gordon A.

    2016-01-01

    Automation of the mounting of cryocooled samples is now a feature of the majority of beamlines dedicated to macromolecular crystallography (MX). Robotic sample changers have been developed over many years, with the latest designs increasing capacity, reliability and speed. Here, the development of a new sample changer deployed at the ESRF beamline MASSIF-1 (ID30A-1), based on an industrial six-axis robot, is described. The device, named RoboDiff, includes a high-capacity dewar, acts as both a sample changer and a high-accuracy goniometer, and has been designed for completely unattended sample mounting and diffraction data collection. This aim has been achieved using a high level of diagnostics at all steps of the process from mounting and characterization to data collection. The RoboDiff has been in service on the fully automated endstation MASSIF-1 at the ESRF since September 2014 and, at the time of writing, has processed more than 20 000 samples completely automatically. PMID:27487827

  14. Automated combustion accelerator mass spectrometry for the analysis of biomedical samples in the low attomole range.

    PubMed

    van Duijn, Esther; Sandman, Hugo; Grossouw, Dimitri; Mocking, Johannes A J; Coulier, Leon; Vaes, Wouter H J

    2014-08-01

    The increasing role of accelerator mass spectrometry (AMS) in biomedical research necessitates modernization of the traditional sample handling process. AMS was originally developed and used for carbon dating, therefore focusing on a very high precision but with a comparably low sample throughput. Here, we describe the combination of automated sample combustion with an elemental analyzer (EA) online coupled to an AMS via a dedicated interface. This setup allows direct radiocarbon measurements for over 70 samples daily by AMS. No sample processing is required apart from the pipetting of the sample into a tin foil cup, which is placed in the carousel of the EA. In our system, up to 200 AMS analyses are performed automatically without the need for manual interventions. We present results on the direct total (14)C count measurements in <2 μL human plasma samples. The method shows linearity over a range of 0.65-821 mBq/mL, with a lower limit of quantification of 0.65 mBq/mL (corresponding to 0.67 amol for acetaminophen). At these extremely low levels of activity, it becomes important to quantify plasma specific carbon percentages. This carbon percentage is automatically generated upon combustion of a sample on the EA. Apparent advantages of the present approach include complete omission of sample preparation (reduced hands-on time) and fully automated sample analysis. These improvements clearly stimulate the standard incorporation of microtracer research in the drug development process. In combination with the particularly low sample volumes required and extreme sensitivity, AMS strongly improves its position as a bioanalysis method. PMID:25033319

  15. Automated AFM force curve analysis for determining elastic modulus of biomaterials and biological samples.

    PubMed

    Chang, Yow-Ren; Raghunathan, Vijay Krishna; Garland, Shaun P; Morgan, Joshua T; Russell, Paul; Murphy, Christopher J

    2014-09-01

    The analysis of atomic force microscopy (AFM) force data requires the selection of a contact point (CP) and is often time consuming and subjective due to influence from intermolecular forces and low signal-to-noise ratios (SNR). In this report, we present an automated algorithm for the selection of CPs in AFM force data and the evaluation of elastic moduli. We propose that CP may be algorithmically easier to detect by identifying a linear elastic indentation region of data (high SNR) rather than the contact point itself (low SNR). Utilizing Hertzian mechanics, the data are fitted for the CP. We first detail the algorithm and then evaluate it on sample polymeric and biological materials. As a demonstration of automation, 64 × 64 force maps were analyzed to yield spatially varying topographical and mechanical information of cells. Finally, we compared manually selected CPs to automatically identified CPs and demonstrated that our automated approach is both accurate (< 10nm difference between manual and automatic) and precise for non-interacting polymeric materials. Our data show that the algorithm is useful for analysis of both biomaterials and biological samples. PMID:24951927

  16. Development of an automated data processing method for sample to sample comparison of seized methamphetamines.

    PubMed

    Choe, Sanggil; Lee, Jaesin; Choi, Hyeyoung; Park, Yujin; Lee, Heesang; Pyo, Jaesung; Jo, Jiyeong; Park, Yonghoon; Choi, Hwakyung; Kim, Suncheun

    2012-11-30

    The information about the sources of supply, trafficking routes, distribution patterns and conspiracy links can be obtained from methamphetamine profiling. The precursor and synthetic method for the clandestine manufacture can be estimated from the analysis of minor impurities contained in methamphetamine. Also, the similarity between samples can be evaluated using the peaks that appear in chromatograms. In South Korea, methamphetamine was the most popular drug but the total seized amount of methamphetamine whole through the country was very small. Therefore, it would be more important to find the links between samples than the other uses of methamphetamine profiling. Many Asian countries including Japan and South Korea have been using the method developed by National Research Institute of Police Science of Japan. The method used gas chromatography-flame ionization detector (GC-FID), DB-5 column and four internal standards. It was developed to increase the amount of impurities and minimize the amount of methamphetamine. After GC-FID analysis, the raw data have to be processed. The data processing steps are very complex and require a lot of time and effort. In this study, Microsoft Visual Basic Application (VBA) modules were developed to handle these data processing steps. This module collected the results from the data into an Excel file and then corrected the retention time shift and response deviation generated from the sample preparation and instruments analysis. The developed modules were tested for their performance using 10 samples from 5 different cases. The processed results were analyzed with Pearson correlation coefficient for similarity assessment and the correlation coefficient of the two samples from the same case was more than 0.99. When the modules were applied to 131 seized methamphetamine samples, four samples from two different cases were found to have the common origin and the chromatograms of the four samples were appeared visually identical

  17. An investigative comparison of purging and non-purging groundwater sampling methods in Karoo aquifer monitoring wells

    NASA Astrophysics Data System (ADS)

    Gomo, M.; Vermeulen, D.

    2015-03-01

    An investigation was conducted to statistically compare the influence of non-purging and purging groundwater sampling methods on analysed inorganic chemistry parameters and calculated saturation indices. Groundwater samples were collected from 15 monitoring wells drilled in Karoo aquifers before and after purging for the comparative study. For the non-purging method, samples were collected from groundwater flow zones located in the wells using electrical conductivity (EC) profiling. The two data sets of non-purged and purged groundwater samples were analysed for inorganic chemistry parameters at the Institute of Groundwater Studies (IGS) laboratory of the Free University in South Africa. Saturation indices for mineral phases that were found in the data base of PHREEQC hydrogeochemical model were calculated for each data set. Four one-way ANOVA tests were conducted using Microsoft excel 2007 to investigate if there is any statistically significant difference between: (1) all inorganic chemistry parameters measured in the non-purged and purged groundwater samples per each specific well, (2) all mineral saturation indices calculated for the non-purged and purged groundwater samples per each specific well, (3) individual inorganic chemistry parameters measured in the non-purged and purged groundwater samples across all wells and (4) Individual mineral saturation indices calculated for non-purged and purged groundwater samples across all wells. For all the ANOVA tests conducted, the calculated alpha values (p) are greater than 0.05 (significance level) and test statistic (F) is less than the critical value (Fcrit) (F < Fcrit). The results imply that there was no statistically significant difference between the two data sets. With a 95% confidence, it was therefore concluded that the variance between groups was rather due to random chance and not to the influence of the sampling methods (tested factor). It is therefore be possible that in some hydrogeologic conditions

  18. Automated, Ultra-Sterile Solid Sample Handling and Analysis on a Chip

    NASA Technical Reports Server (NTRS)

    Mora, Maria F.; Stockton, Amanda M.; Willis, Peter A.

    2013-01-01

    There are no existing ultra-sterile lab-on-a-chip systems that can accept solid samples and perform complete chemical analyses without human intervention. The proposed solution is to demonstrate completely automated lab-on-a-chip manipulation of powdered solid samples, followed by on-chip liquid extraction and chemical analysis. This technology utilizes a newly invented glass micro-device for solid manipulation, which mates with existing lab-on-a-chip instrumentation. Devices are fabricated in a Class 10 cleanroom at the JPL MicroDevices Lab, and are plasma-cleaned before and after assembly. Solid samples enter the device through a drilled hole in the top. Existing micro-pumping technology is used to transfer milligrams of powdered sample into an extraction chamber where it is mixed with liquids to extract organic material. Subsequent chemical analysis is performed using portable microchip capillary electrophoresis systems (CE). These instruments have been used for ultra-highly sensitive (parts-per-trillion, pptr) analysis of organic compounds including amines, amino acids, aldehydes, ketones, carboxylic acids, and thiols. Fully autonomous amino acid analyses in liquids were demonstrated; however, to date there have been no reports of completely automated analysis of solid samples on chip. This approach utilizes an existing portable instrument that houses optics, high-voltage power supplies, and solenoids for fully autonomous microfluidic sample processing and CE analysis with laser-induced fluorescence (LIF) detection. Furthermore, the entire system can be sterilized and placed in a cleanroom environment for analyzing samples returned from extraterrestrial targets, if desired. This is an entirely new capability never demonstrated before. The ability to manipulate solid samples, coupled with lab-on-a-chip analysis technology, will enable ultraclean and ultrasensitive end-to-end analysis of samples that is orders of magnitude more sensitive than the ppb goal given

  19. January 2015 Groundwater Sampling at the Gnome-Coach, New Mexico, Site

    SciTech Connect

    Findlay, Rick; Kautsky, Mark

    2015-12-01

    Annual sampling was conducted January 27, 2015, to monitor groundwater for potential radionuclide contamination at the Gnome-Coach site in New Mexico. Samples were collected from wells USGS-1, USGS-4, and USGS-8 during this monitoring event. The sampling was performed as specified in the Sampling and Analysis Plan for US. Department of Energy Office of Legacy Management Sites (LMS/PRO/S04351, continually updated). A duplicate sample was collected from well USGS-8 and water levels were measured in all the monitoring wells onsite. Refer to the sample location map for well locations. Samples were analyzed by GEL Laboratories in Charleston, South Carolina. Samples were analyzed for gamma-emitting radionuclides by high-resolution gamma spectrometry, strontium-90, and tritium. The sample from well USGS-1 was analyzed for tritium using the enrichment method to achieve a lower minimum detectable concentration (MDC). Radionuclide contaminants were detected in wells USGS-4 and USGS-8. The detection of radionuclides in these wells was expected because the U.S. Geological Survey conducted a tracer test between these wells in 1963 using the dissolved radionuclides tritium, strontium-90, and cesium-137 as tracers. Radionuclide time-concentration graphs are included in this report for these wells. Analytical data obtained from this and past sampling events are also available in electronic format on the U.S. Department of Energy Office of Legacy Management Geospatial Environmental Mapping System website at http://gems.lm.doe.gov/#site=GNO.

  20. Dual wall reverse circulation drilling with multi-level groundwater sampling for groundwater contaminant plume delineation at Paducah Gaseous Diffusion Plant, Paducah, Kentucky

    SciTech Connect

    Smuin, D.R.; Morti, E.E.; Zutman, J.L.; Pickering, D.A.

    1995-08-01

    Dual wall reverse circulation (DWRC) drilling was used to drill 48 borings during a groundwater contaminant investigation at the Paducah Gaseous Diffusion Plant, Paducah, Kentucky. This method was selected as an alternative to conventional hollow stem auger drilling for a number of reasons, including the expectation of minimizing waste, increasing the drilling rate, and reducing the potential for cross contamination of aquifers. Groundwater samples were collected from several water-bearing zones during drilling of each borehole. The samples were analyzed for volatile organic compounds using a field gas chromatograph. This approach allowed the investigation to be directed using near-real-time data. Use of downhole geophysical logging, in conjunction with lithologic descriptions of borehole cuttings, resulted in excellent correlation of the geology in the vicinity of the contaminant plume. The total volume of cuttings generated using the DWRC drilling method was less than half of what would have been produced by hollow stem augering; however, the cuttings were recovered in slurry form and had to be dewatered prior to disposal. The drilling rate was very rapid, often approaching 10 ft/min; however, frequent breaks to perform groundwater sampling resulted in an average drilling rate of < 1 ft/min. The time required for groundwater sampling could be shortened by changing the sampling methodology. Analytical results indicated that the drilling method successfully isolated the various water bearing zones and no cross contamination resulted from the investigation.

  1. Binary Mixtures of Permanganate and Chlorinated Volatile Organic Compounds in Groundwater Samples: Sample Preservation and Analysis

    EPA Science Inventory

    Ground water samples collected at sites where in-situ chemical oxidation (ISCO) has been deployed may contain binary mixtures of ground water contaminants and permanganate (MnO4-), an oxidant injected into the subsurface to destroy the contaminant. Commingling of the oxidant and ...

  2. Device and method for automated separation of a sample of whole blood into aliquots

    DOEpatents

    Burtis, Carl A.; Johnson, Wayne F.

    1989-01-01

    A device and a method for automated processing and separation of an unmeasured sample of whole blood into multiple aliquots of plasma. Capillaries are radially oriented on a rotor, with the rotor defining a sample chamber, transfer channels, overflow chamber, overflow channel, vent channel, cell chambers, and processing chambers. A sample of whole blood is placed in the sample chamber, and when the rotor is rotated, the blood moves outward through the transfer channels to the processing chambers where the blood is centrifugally separated into a solid cellular component and a liquid plasma component. When the rotor speed is decreased, the plasma component backfills the capillaries resulting in uniform aliquots of plasma which may be used for subsequent analytical procedures.

  3. The Influence of Pumping on Observed Bacterial Counts in Groundwater Samples: Implications for Sampling Protocol and Water Quality Interpretation

    NASA Astrophysics Data System (ADS)

    Kozuskanich, J.; Novakowski, K.; Anderson, B.

    2008-12-01

    Drinking water quality has become an important issue in Ontario following the events in Walkerton in 2000. Many rural communities are reliant on private groundwater wells for drinking water, and it is the responsibility of the owner to have the water tested to make sure it is safe for human consumption. Homeowners can usually take a sample to the local health unit for total coliform and E. Coli analysis at no charge to determine if the water supply is being tainted by surface water or fecal matter, both of which could indicate the potential for negative impacts on human health. However, is the sample coming out of the tap representative of what is going on the aquifer? The goal of this study is to observe how bacterial counts may vary during the course of well pumping, and how those changing results influence the assessment of water quality. Multiple tests were conducted in bedrock monitoring wells to examine the influence of pumping rate and pumped volume on observed counts of total coliform, E. Coli, fecal streptococcus, fecal coliform and heterotrophic plate count. Bacterial samples were collected frequently during the course of continuous purging events lasting up to 8 hours. Typical field parameters (temperature, salinity, pH, dissolved oxygen and ORP) were also continuously monitored during the course of each test. Common practice in groundwater studies is to wait until these parameters have stabilized or three well volumes have been removed prior to sampling, to ensure the sample is taken from new water entering the well from the aquifer, rather than the original water stored in the borehole prior to the test. In general, most bacterial counts were low, but did go above the drinking water standard of 0 counts/100mL (total coliform and E. Coli) at times during the tests. Results show the greatest variability in the observed bacterial counts at the onset of pumping prior to the removal of three well volumes. Samples taken after the removal of three well

  4. Lower groundwater ¹⁴C age by atmospheric CO₂ uptake during sampling and analysis.

    PubMed

    Aggarwal, Pradeep K; Araguas-Araguas, Luis; Choudhry, Manzoor; van Duren, Michel; Froehlich, Klaus

    2014-01-01

    Uptake of atmospheric CO₂ during sample collection and analysis, and consequent lowering of estimated ages, has rarely been considered in radiocarbon dating of groundwater. Using field and laboratory experiments, we show that atmospheric CO₂ can be easily and rapidly absorbed in hyperalkaline solutions used for the extraction of dissolved inorganic carbon, resulting in elevated ¹⁴C measurements. Kinetic isotope fractionation during atmospheric CO₂ uptake may also result in decrease of δ¹³C, leading to insufficient corrections for addition of dead carbon by geochemical processes. Consequently, measured ¹⁴C values of groundwater should not be used for age estimation without corresponding δ¹³C values, and historical ¹⁴C data in the range of 1 to 10% modern Carbon should be re-evaluated to ensure that samples with atmospheric contamination are recognized appropriately. We recommend that samples for ¹⁴C analysis should be collected and processed in the field and the laboratory without exposure to the atmosphere. These precautions are considered necessary even if ¹⁴C measurements are made with an accelerator mass spectrometer. PMID:24032418

  5. Automated sample exchange and tracking system for neutron research at cryogenic temperatures.

    PubMed

    Rix, J E; Weber, J K R; Santodonato, L J; Hill, B; Walker, L M; McPherson, R; Wenzel, J; Hammons, S E; Hodges, J; Rennich, M; Volin, K J

    2007-01-01

    An automated system for sample exchange and tracking in a cryogenic environment and under remote computer control was developed. Up to 24 sample "cans" per cycle can be inserted and retrieved in a programed sequence. A video camera acquires a unique identification marked on the sample can to provide a record of the sequence. All operations are coordinated via a LABVIEW program that can be operated locally or over a network. The samples are contained in vanadium cans of 6-10 mm in diameter and equipped with a hermetically sealed lid that interfaces with the sample handler. The system uses a closed-cycle refrigerator (CCR) for cooling. The sample was delivered to a precooling location that was at a temperature of approximately 25 K, after several minutes, it was moved onto a "landing pad" at approximately 10 K that locates the sample in the probe beam. After the sample was released onto the landing pad, the sample handler was retracted. Reading the sample identification and the exchange operation takes approximately 2 min. The time to cool the sample from ambient temperature to approximately 10 K was approximately 7 min including precooling time. The cooling time increases to approximately 12 min if precooling is not used. Small differences in cooling rate were observed between sample materials and for different sample can sizes. Filling the sample well and the sample can with low pressure helium is essential to provide heat transfer and to achieve useful cooling rates. A resistive heating coil can be used to offset the refrigeration so that temperatures up to approximately 350 K can be accessed and controlled using a proportional-integral-derivative control loop. The time for the landing pad to cool to approximately 10 K after it has been heated to approximately 240 K was approximately 20 min. PMID:17503933

  6. Apparatus and method for time-integrated, active sampling of contaminants in fluids demonstrated by monitoring of hexavalent chromium in groundwater.

    PubMed

    Roll, Isaac B; Driver, Erin M; Halden, Rolf U

    2016-06-15

    Annual U.S. expenditures of $2B for site characterization invite the development of new technologies to improve data quality while reducing costs and minimizing uncertainty in groundwater monitoring. This work presents a new instrument for time-integrated sampling of environmental fluids using in situ solid-phase extraction (SPE). The In Situ Sampler (IS2) is an automated submersible device capable of extracting dissolved contaminants from water (100s-1000smL) over extended periods (hours to weeks), retaining the analytes, and rejecting the processed fluid. A field demonstration of the IS2 revealed 28-day average concentration of hexavalent chromium in a shallow aquifer affected by tidal stresses via sampling of groundwater as both liquid and sorbed composite samples, each obtained in triplicate. In situ SPE exhibited 75±6% recovery and an 8-fold improvement in reporting limit. Relative to use of conventional methods (100%), beneficial characteristics of the device and method included minimal hazardous material generation (2%), transportation cost (10%), and associated carbon footprint (2%). The IS2 is compatible with commercial SPE resins and standard extraction methods, and has been certified for more general use (i.e., inorganics and organics) by the Environmental Security Technology Certification Program (ESTCP) of the U.S. Department of Defense. PMID:26971208

  7. Data validation report for the 100-FR-3 Operable Unit, third round groundwater samples

    SciTech Connect

    Ayres, J.M.

    1994-03-31

    Westinghouse-Hanford has requested that a minimum of 20% of the total number of Sample Delivery Groups be validated for the 100-FR-3 operable Unit Third Round Groundwater sampling investigation. Therefore, the data from the chemical analysis of 51 samples from this sampling event and their related quality assurance samples were reviewed and validated to verify that reported sample results were of sufficient quality to support decisions regarding remedial actions performed at this site. The report is broken down into sections for each chemical analysis and radiochemical analysis type. Each section addresses the data package completeness, holding time adherence, instrument calibration and tuning acceptability, blank results, accuracy, precision, system performance, as well as the compound identification and quantitation. In addition, each section has an overall assessment and summary for the data packages reviewed for the particular chemical/radiochemical analyses. Detailed backup information is provided to the reader by SDG No. and sample number. For each data package, a matrix of chemical analyses per sample number is presented, as well as data qualification summaries.

  8. Mechanical Alteration And Contamination Issues In Automated Subsurface Sample Acquisition And Handling

    NASA Astrophysics Data System (ADS)

    Glass, B. J.; Cannon, H.; Bonaccorsi, R.; Zacny, K.

    2006-12-01

    The Drilling Automation for Mars Exploration (DAME) project's purpose is to develop and field-test drilling automation and robotics technologies for projected use in missions in the 2011-15 period. DAME includes control of the drilling hardware, and state estimation of both the hardware and the lithography being drilled and the state of the hole. A sister drill was constructed for the Mars Analog Río Tinto Experiment (MARTE) project and demonstrated automated core handling and string changeout in 2005 drilling tests at Rio Tinto, Spain. DAME focused instead on the problem of drill control while actively drilling while not getting stuck. Together, the DAME and MARTE projects demonstrate a fully automated robotic drilling capability, including hands-off drilling, adjustment to different strata and downhole conditions, recovery from drilling faults (binding, choking, etc.), drill string changeouts, core acquisition and removal, and sample handling and conveyance to in-situ instruments. The 2006 top-level goal of DAME drilling in-situ tests was to verify and demonstrate a capability for hands-off automated drilling, at an Arctic Mars-analog site. There were three sets of 2006 test goals, all of which were exceeded during the July 2006 field season. The first was to demonstrate the recognition, while drilling, of at least three of the six known major fault modes for the DAME planetary-prototype drill, and to employ the correct recovery or safing procedure in response. The second set of 2006 goals was to operate for three or more hours autonomously, hands-off. And the third 2006 goal was to exceed 3m depth into the frozen breccia and permafrost with the DAME drill (it had not gone further than 2.2m previously). Five of six faults were detected and corrected, there were 43 hours of hands-off drilling (including a 4 hour sequence with no human presence nearby), and 3.2m was the total depth. And ground truth drilling used small commercial drilling equipment in parallel in

  9. SAMPL4 & DOCK3.7: Lessons for automated docking procedures

    PubMed Central

    Coleman, Ryan G.; Sterling, Teague; Weiss, Dahlia R.

    2014-01-01

    The SAMPL4 challenges were used to test current automated methods for solvation energy, virtual screening, pose and affinity prediction of the molecular docking pipeline DOCK 3.7. Additionally, first-order models of binding affinity were proposed as milestones for any method predicting binding affinity. Several important discoveries about the molecular docking software were made during the challenge: 1) Solvation energies of ligands were five-fold worse than any other method used in SAMPL4, including methods that were similarly fast, 2) HIV Integrase is a challenging target, but automated docking on the correct allosteric site performed well in terms of virtual screening and pose prediction (compared to other methods) but affinity prediction, as expected, was very poor, 3) Molecular docking grid sizes can be very important, serious errors were discovered with default settings that have been adjusted for all future work. Overall, lessons from SAMPL4 suggest many changes to molecular docking tools, not just DOCK 3.7, that could improve the state of the art. Future difficulties and projects will be discussed. PMID:24515818

  10. Automated processing of forensic casework samples using robotic workstations equipped with nondisposable tips: contamination prevention.

    PubMed

    Frégeau, Chantal J; Lett, C Marc; Elliott, Jim; Yensen, Craig; Fourney, Ron M

    2008-05-01

    An automated process has been developed for the analysis of forensic casework samples using TECAN Genesis RSP 150/8 or Freedom EVO liquid handling workstations equipped exclusively with nondisposable tips. Robot tip cleaning routines have been incorporated strategically within the DNA extraction process as well as at the end of each session. Alternative options were examined for cleaning the tips and different strategies were employed to verify cross-contamination. A 2% sodium hypochlorite wash (1/5th dilution of the 10.8% commercial bleach stock) proved to be the best overall approach for preventing cross-contamination of samples processed using our automated protocol. The bleach wash steps do not adversely impact the short tandem repeat (STR) profiles developed from DNA extracted robotically and allow for major cost savings through the implementation of fixed tips. We have demonstrated that robotic workstations equipped with fixed pipette tips can be used with confidence with properly designed tip washing routines to process casework samples using an adapted magnetic bead extraction protocol. PMID:18471209

  11. Automated CBED processing: sample thickness estimation based on analysis of zone-axis CBED pattern.

    PubMed

    Klinger, M; Němec, M; Polívka, L; Gärtnerová, V; Jäger, A

    2015-03-01

    An automated processing of convergent beam electron diffraction (CBED) patterns is presented. The proposed methods are used in an automated tool for estimating the thickness of transmission electron microscopy (TEM) samples by matching an experimental zone-axis CBED pattern with a series of patterns simulated for known thicknesses. The proposed tool detects CBED disks, localizes a pattern in detected disks and unifies the coordinate system of the experimental pattern with the simulated one. The experimental pattern is then compared disk-by-disk with a series of simulated patterns each corresponding to different known thicknesses. The thickness of the most similar simulated pattern is then taken as the thickness estimate. The tool was tested on [0 1 1] Si, [0 1 0] α-Ti and [0 1 1] α-Ti samples prepared using different techniques. Results of the presented approach were compared with thickness estimates based on analysis of CBED patterns in two beam conditions. The mean difference between these two methods was 4.1% for the FIB-prepared silicon samples, 5.2% for the electro-chemically polished titanium and 7.9% for Ar(+) ion-polished titanium. The proposed techniques can also be employed in other established CBED analyses. Apart from the thickness estimation, it can potentially be used to quantify lattice deformation, structure factors, symmetry, defects or extinction distance. PMID:25544679

  12. Automated Mars surface sample return mission concepts for achievement of essential scientific objectives

    NASA Technical Reports Server (NTRS)

    Weaver, W. L.; Norton, H. N.; Darnell, W. L.

    1975-01-01

    Mission concepts were investigated for automated return to Earth of a Mars surface sample adequate for detailed analyses in scientific laboratories. The minimum sample mass sufficient to meet scientific requirements was determined. Types of materials and supporting measurements for essential analyses are reported. A baseline trajectory profile was selected for its low energy requirements and relatively simple implementation, and trajectory profile design data were developed for 1979 and 1981 launch opportunities. Efficient spacecraft systems were conceived by utilizing existing technology where possible. Systems concepts emphasized the 1979 launch opportunity, and the applicability of results to other opportunities was assessed. It was shown that the baseline missions (return through Mars parking orbit) and some comparison missions (return after sample transfer in Mars orbit) can be accomplished by using a single Titan III E/Centaur as the launch vehicle. All missions investigated can be accomplished by use of Space Shuttle/Centaur vehicles.

  13. Sampling and analysis plan for the characterization of groundwater quality in two monitoring wells near Pavillion, Wyoming

    USGS Publications Warehouse

    Wright, Peter R.; McMahon, Peter B.

    2012-01-01

    In June 2010, the U.S. Environmental Protection Agency installed two deep monitoring wells (MW01 and MW02) near Pavillion, Wyoming to study groundwater quality. The U.S Geological Survey, in cooperation with the Wyoming Department of Environmental Quality, designed a plan to collect groundwater data from these monitoring wells. This sampling and analysis plan describes the sampling equipment that will be used, well purging strategy, purge water disposal, sample collection and processing, field and laboratory sample analysis, equipment decontamination, and quality-assurance and quality-control procedures.

  14. Waste and cost reduction using dual wall reverse circulation drilling with multi-level groundwater sampling for contaminant plume delineation

    SciTech Connect

    Smuin, D.R.

    1995-12-01

    This paper describes the drilling and sampling methods used to delineate a groundwater contaminant plume at the Paducah Gaseous Diffusion Plant (PGDP) during the Groundwater Monitoring IV characterization. The project was unique in that it relied upon dual wall reverse circulation drilling instead of the traditional hollow stem auger method. The Groundwater Monitoring program sought to characterize the boundaries, both vertically and horizontally, of the northeast plume which contains both {sup 99}Tc and trichloroethene. This paper discusses the strengths and weaknesses of the drilling method used by investigators.

  15. A Tube Seepage Meter for In Situ Measurement of Seepage Rate and Groundwater Sampling.

    PubMed

    Solder, John E; Gilmore, Troy E; Genereux, David P; Solomon, D Kip

    2016-07-01

    We designed and evaluated a "tube seepage meter" for point measurements of vertical seepage rates (q), collecting groundwater samples, and estimating vertical hydraulic conductivity (K) in streambeds. Laboratory testing in artificial streambeds show that seepage rates from the tube seepage meter agreed well with expected values. Results of field testing of the tube seepage meter in a sandy-bottom stream with a mean seepage rate of about 0.5 m/day agreed well with Darcian estimates (vertical hydraulic conductivity times head gradient) when averaged over multiple measurements. The uncertainties in q and K were evaluated with a Monte Carlo method and are typically 20% and 60%, respectively, for field data, and depend on the magnitude of the hydraulic gradient and the uncertainty in head measurements. The primary advantages of the tube seepage meter are its small footprint, concurrent and colocated assessments of q and K, and that it can also be configured as a self-purging groundwater-sampling device. PMID:26683886

  16. Robowell: An automated process for monitoring ground water quality using established sampling protocols

    USGS Publications Warehouse

    Granato, G.E.; Smith, K.P.

    1999-01-01

    Robowell is an automated process for monitoring selected ground water quality properties and constituents by pumping a well or multilevel sampler. Robowell was developed and tested to provide a cost-effective monitoring system that meets protocols expected for manual sampling. The process uses commercially available electronics, instrumentation, and hardware, so it can be configured to monitor ground water quality using the equipment, purge protocol, and monitoring well design most appropriate for the monitoring site and the contaminants of interest. A Robowell prototype was installed on a sewage treatment plant infiltration bed that overlies a well-studied unconfined sand and gravel aquifer at the Massachusetts Military Reservation, Cape Cod, Massachusetts, during a time when two distinct plumes of constituents were released. The prototype was operated from May 10 to November 13, 1996, and quality-assurance/quality-control measurements demonstrated that the data obtained by the automated method was equivalent to data obtained by manual sampling methods using the same sampling protocols. Water level, specific conductance, pH, water temperature, dissolved oxygen, and dissolved ammonium were monitored by the prototype as the wells were purged according to U.S Geological Survey (USGS) ground water sampling protocols. Remote access to the data record, via phone modem communications, indicated the arrival of each plume over a few days and the subsequent geochemical reactions over the following weeks. Real-time availability of the monitoring record provided the information needed to initiate manual sampling efforts in response to changes in measured ground water quality, which proved the method and characterized the screened portion of the plume in detail through time. The methods and the case study described are presented to document the process for future use.

  17. Automated high-throughput in vitro screening of the acetylcholine esterase inhibiting potential of environmental samples, mixtures and single compounds.

    PubMed

    Froment, Jean; Thomas, Kevin V; Tollefsen, Knut Erik

    2016-08-01

    A high-throughput and automated assay for testing the presence of acetylcholine esterase (AChE) inhibiting compounds was developed, validated and applied to screen different types of environmental samples. Automation involved using the assay in 96-well plates and adapting it for the use with an automated workstation. Validation was performed by comparing the results of the automated assay with that of a previously validated and standardised assay for two known AChE inhibitors (paraoxon and dichlorvos). The results show that the assay provides similar concentration-response curves (CRCs) when run according to the manual and automated protocol. Automation of the assay resulted in a reduction in assay run time as well as in intra- and inter-assay variations. High-quality CRCs were obtained for both of the model AChE inhibitors (dichlorvos IC50=120µM and paraoxon IC50=0.56µM) when tested alone. The effect of co-exposure of an equipotent binary mixture of the two chemicals were consistent with predictions of additivity and best described by the concentration addition model for combined toxicity. Extracts of different environmental samples (landfill leachate, wastewater treatment plant effluent, and road tunnel construction run-off) were then screened for AChE inhibiting activity using the automated bioassay, with only landfill leachate shown to contain potential AChE inhibitors. Potential uses and limitations of the assay were discussed based on the present results. PMID:27085000

  18. The quantification of hydrogen and methane in contaminated groundwater: validation of robust procedures for sampling and quantification.

    PubMed

    Dorgerloh, Ute; Becker, Roland; Theissen, Hubert; Nehls, Irene

    2010-10-01

    A number of currently recommended sampling techniques for the determination of hydrogen in contaminated groundwater were compared regarding the practical proficiency in field campaigns. Key characteristics of appropriate sampling procedures are reproducibility of results, robustness against varying field conditions such as hydrostatic pressure, aquifer flow, and biological activity. Laboratory set-ups were used to investigate the most promising techniques. Bubble stripping with gas sampling bulbs yielded reproducible recovery of hydrogen and methane which could be verified for groundwater sampled in two field campaigns. The methane content of the groundwater was confirmed by analysis of directly pumped samples thus supporting the trueness of the stripping results. Laboratory set-ups and field campaigns revealed that bubble stripping of hydrogen may be restricted to the type of used pump. Concentrations of dissolved hydrogen after bubble stripping with an electrically driven submersible pump were about one order of magnitude higher than those obtained from diffusion sampling. The gas chromatographic determination for hydrogen and methane requires manual injection of gas samples and detection by a pulsed discharge detector (PDD) and allows limits of quantification of 3 nM dissolved hydrogen and 1 µg L⁻¹ dissolved methane in groundwater. The combined standard uncertainty of the bubble stripping and GC/PDD quantification of hydrogen in field samples was 7% at 7.8 nM and 18% for 78 nM. PMID:20730246

  19. Fully Automated Laser Ablation Liquid Capture Sample Analysis using NanoElectrospray Ionization Mass Spectrometry

    SciTech Connect

    Lorenz, Matthias; Ovchinnikova, Olga S; Van Berkel, Gary J

    2014-01-01

    RATIONALE: Laser ablation provides for the possibility of sampling a large variety of surfaces with high spatial resolution. This type of sampling when employed in conjunction with liquid capture followed by nanoelectrospray ionization provides the opportunity for sensitive and prolonged interrogation of samples by mass spectrometry as well as the ability to analyze surfaces not amenable to direct liquid extraction. METHODS: A fully automated, reflection geometry, laser ablation liquid capture spot sampling system was achieved by incorporating appropriate laser fiber optics and a focusing lens into a commercially available, liquid extraction surface analysis (LESA ) ready Advion TriVersa NanoMate system. RESULTS: Under optimized conditions about 10% of laser ablated material could be captured in a droplet positioned vertically over the ablation region using the NanoMate robot controlled pipette. The sampling spot size area with this laser ablation liquid capture surface analysis (LA/LCSA) mode of operation (typically about 120 m x 160 m) was approximately 50 times smaller than that achievable by direct liquid extraction using LESA (ca. 1 mm diameter liquid extraction spot). The set-up was successfully applied for the analysis of ink on glass and paper as well as the endogenous components in Alstroemeria Yellow King flower petals. In a second mode of operation with a comparable sampling spot size, termed laser ablation/LESA , the laser system was used to drill through, penetrate, or otherwise expose material beneath a solvent resistant surface. Once drilled, LESA was effective in sampling soluble material exposed at that location on the surface. CONCLUSIONS: Incorporating the capability for different laser ablation liquid capture spot sampling modes of operation into a LESA ready Advion TriVersa NanoMate enhanced the spot sampling spatial resolution of this device and broadened the surface types amenable to analysis to include absorbent and solvent resistant

  20. Microbiological monitoring and automated event sampling at karst springs using LEO-satellites.

    PubMed

    Stadler, H; Skritek, P; Sommer, R; Mach, R L; Zerobin, W; Farnleitner, A H

    2008-01-01

    Data communication via Low-Earth-Orbit (LEO) Satellites between portable hydrometeorological measuring stations is the backbone of our system. This networking allows automated event sampling with short time increments also for E. coli field analysis. All activities of the course of the event-sampling can be observed on an internet platform based on a Linux-Server. Conventionally taken samples compared with the auto-sampling procedure revealed corresponding results and were in agreement with the ISO 9308-1 reference method. E. coli concentrations were individually corrected by event specific inactivation coefficients (0.10-0.14 day(-1)), compensating losses due to sample storage at spring temperature in the auto sampler.Two large summer events in 2005/2006 at an important alpine karst spring (LKAS2) were monitored including detailed analysis of E. coli dynamics (n = 271) together with comprehensive hydrological characterisations. High-resolution time series demonstrated a sudden increase of E. coli concentrations in spring water (approximately 2 log10 units) with a specific time delay after the beginning of the event. Statistical analysis suggested the spectral absorption coefficient measured at 254 nm (SAC254) as an early warning surrogate for real time monitoring of faecal input. Together with the LEO-satellite based system it is a helpful tool for early-warning systems in the field of drinking water protection. PMID:18776628

  1. Automated MALDI matrix coating system for multiple tissue samples for imaging mass spectrometry.

    PubMed

    Mounfield, William P; Garrett, Timothy J

    2012-03-01

    Uniform matrix deposition on tissue samples for matrix-assisted laser desorption/ionization (MALDI) is key for reproducible analyte ion signals. Current methods often result in nonhomogenous matrix deposition, and take time and effort to produce acceptable ion signals. Here we describe a fully-automated method for matrix deposition using an enclosed spray chamber and spray nozzle for matrix solution delivery. A commercial air-atomizing spray nozzle was modified and combined with solenoid controlled valves and a Programmable Logic Controller (PLC) to control and deliver the matrix solution. A spray chamber was employed to contain the nozzle, sample, and atomized matrix solution stream, and to prevent any interference from outside conditions as well as allow complete control of the sample environment. A gravity cup was filled with MALDI matrix solutions, including DHB in chloroform/methanol (50:50) at concentrations up to 60 mg/mL. Various samples (including rat brain tissue sections) were prepared using two deposition methods (spray chamber, inkjet). A linear ion trap equipped with an intermediate-pressure MALDI source was used for analyses. Optical microscopic examination showed a uniform coating of matrix crystals across the sample. Overall, the mass spectral images gathered from tissues coated using the spray chamber system were of better quality and more reproducible than from tissue specimens prepared by the inkjet deposition method. PMID:22234508

  2. MICROBIOLOGICAL MONITORING AND AUTOMATED EVENT SAMPLING AT KARST SPRINGS USING LEO-SATELLITES

    PubMed Central

    Stadler, Hermann; Skritek, Paul; Sommer, Regina; Mach, Robert L.; Zerobin, Wolfgang; Farnleitner, Andreas H.

    2010-01-01

    Data communication via Low-Earth-Orbit Satellites between portable hydro-meteorological measuring stations is the backbone of our system. This networking allows automated event sampling with short time increments also for E.coli field analysis. All activities of the course of the event-sampling can be observed on an internet platform based on a Linux-Server. Conventionally taken samples by hand compared with the auto-sampling procedure revealed corresponding results and were in agreement to the ISO 9308-1 reference method. E.coli concentrations were individually corrected by event specific die-off rates (0.10–0.14 day−1) compensating losses due to sample storage at spring temperature in the auto sampler. Two large summer events 2005/2006 at a large alpine karst spring (LKAS2) were monitored including detailed analysis of E.coli dynamics (n = 271) together with comprehensive hydrological characterisations. High resolution time series demonstrated a sudden increase of E.coli concentrations in spring water (approx. 2 log10 units) with a specific time delay after the beginning of the event. Statistical analysis suggested the spectral absorbent coefficient measured at 254nm (SAC254) as an early warning surrogate for real time monitoring of faecal input. Together with the LEO-Satellite based system it is a helpful tool for Early-Warning-Systems in the field of drinking water protection. PMID:18776628

  3. Automated MALDI Matrix Coating System for Multiple Tissue Samples for Imaging Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Mounfield, William P.; Garrett, Timothy J.

    2012-03-01

    Uniform matrix deposition on tissue samples for matrix-assisted laser desorption/ionization (MALDI) is key for reproducible analyte ion signals. Current methods often result in nonhomogenous matrix deposition, and take time and effort to produce acceptable ion signals. Here we describe a fully-automated method for matrix deposition using an enclosed spray chamber and spray nozzle for matrix solution delivery. A commercial air-atomizing spray nozzle was modified and combined with solenoid controlled valves and a Programmable Logic Controller (PLC) to control and deliver the matrix solution. A spray chamber was employed to contain the nozzle, sample, and atomized matrix solution stream, and to prevent any interference from outside conditions as well as allow complete control of the sample environment. A gravity cup was filled with MALDI matrix solutions, including DHB in chloroform/methanol (50:50) at concentrations up to 60 mg/mL. Various samples (including rat brain tissue sections) were prepared using two deposition methods (spray chamber, inkjet). A linear ion trap equipped with an intermediate-pressure MALDI source was used for analyses. Optical microscopic examination showed a uniform coating of matrix crystals across the sample. Overall, the mass spectral images gathered from tissues coated using the spray chamber system were of better quality and more reproducible than from tissue specimens prepared by the inkjet deposition method.

  4. Direct sampling ion trap mass spectrometry vs. GC/MS for monitoring VOCs in groundwater

    SciTech Connect

    Wise, M.B.; Merriweather, R.; Guerin, M.R.

    1995-12-31

    Direct Sampling Ion Trap Mass Spectrometry (DSITMS) has been under refinement and demonstration by this laboratory for several years. The general technology is applicable to a wide range of problems which would benefit from high sample throughput, fast availability of results, and relatively low cost per sample analysis when compared with conventional analytical methods. At the present time, DSITMS can be used to determine targeted analytes in air, water, soil, and other media. This is accomplished by equipping an ion trap with a direct inlet system which consists of a splitter, capillary restrictor, and a set of sample inlet modules. The capillary restrictor provides the interface between atmosphere and the vacuum in the ion trap while the splitter enables sampling modules which require high gas flow rates to be used with the system. The sampling modules consist of a purge module for analyzing VOCs in water or soil, a direct air sampling module, and a thermal desorber. These modules are designed to be easily interchanged by means of quick connect fittings and a single electrical cable. In general, the DSITMS sample inlet system works equally well on all of the commercially available ion traps with which it has been tested including the Finnigan MAT ITMS, Finnigan MAT Magnum, Varian Saturn, and the Teledyne 3D-Q. Both the Magnum and 3D-Q instruments have been utilized for field applications as well as laboratory analysis. This particular study is a comparison of DSITMS with a purge and trap GC/MS for compliance monitoring of VOC`s in groundwater.

  5. Automated sample preparation in a microfluidic culture device for cellular metabolomics.

    PubMed

    Filla, Laura A; Sanders, Katherine L; Filla, Robert T; Edwards, James L

    2016-06-21

    Sample pretreatment in conventional cellular metabolomics entails rigorous lysis and extraction steps which increase the duration as well as limit the consistency of these experiments. We report a biomimetic cell culture microfluidic device (MFD) which is coupled with an automated system for rapid, reproducible cell lysis using a combination of electrical and chemical mechanisms. In-channel microelectrodes were created using facile fabrication methods, enabling the application of electric fields up to 1000 V cm(-1). Using this platform, average lysing times were 7.12 s and 3.03 s for chips with no electric fields and electric fields above 200 V cm(-1), respectively. Overall, the electroporation MFDs yielded a ∼10-fold improvement in lysing time over standard chemical approaches. Detection of multiple intracellular nucleotides and energy metabolites in MFD lysates was demonstrated using two different MS platforms. This work will allow for the integrated culture, automated lysis, and metabolic analysis of cells in an MFD which doubles as a biomimetic model of the vasculature. PMID:27118418

  6. Automated sample preparation and analysis using a sequential-injection-capillary electrophoresis (SI-CE) interface.

    PubMed

    Kulka, Stephan; Quintás, Guillermo; Lendl, Bernhard

    2006-06-01

    A fully automated sequential-injection-capillary electrophoresis (SI-CE) system was developed using commercially available components as the syringe pump, the selection and injection valves and the high voltage power supply. The interface connecting the SI with the CE unit consisted of two T-pieces, where the capillary was inserted in one T-piece and a Pt electrode in the other (grounded) T-piece. By pressurising the whole system using a syringe pump, hydrodynamic injection was feasible. For characterisation, the system was applied to a mixture of adenosine and adenosine monophosphate at different concentrations. The calibration curve obtained gave a detection limit of 0.5 microg g(-1) (correlation coefficient of 0.997). The reproducibility of the injection was also assessed, resulting in a RSD value (5 injections) of 5.4%. The total time of analysis, from injection, conditioning and separation to cleaning the capillary again was 15 minutes. In another application, employing the full power of the automated SIA-CE system, myoglobin was mixed directly using the flow system with different concentrations of sodium dodecyl sulfate (SDS), a known denaturing agent. The different conformations obtained in this way were analysed with the CE system and a distinct shift in migration time and decreasing of the native peak of myoglobin (Mb) could be observed. The protein samples prepared were also analysed with off-line infrared spectroscopy (IR), confirming these results. PMID:16732362

  7. Handbook: Collecting Groundwater Samples from Monitoring Wells in Frenchman Flat, CAU 98

    SciTech Connect

    Chapman, Jenny; Lyles, Brad; Cooper, Clay; Hershey, Ron; Healey, John

    2015-06-01

    Frenchman Flat basin on the Nevada National Security Site (NNSS) contains Corrective Action Unit (CAU) 98, which is comprised of ten underground nuclear test locations. Environmental management of these test locations is part of the Underground Test Area (UGTA) Activity conducted by the U.S. Department of Energy (DOE) under the Federal Facility Agreement and Consent Order (FFACO) (1996, as amended) with the U.S. Department of Defense (DOD) and the State of Nevada. A Corrective Action Decision Document (CADD)/Corrective Action Plan (CAP) has been approved for CAU 98 (DOE, 2011). The CADD/CAP reports on the Corrective Action Investigation that was conducted for the CAU, which included characterization and modeling. It also presents the recommended corrective actions to address the objective of protecting human health and the environment. The recommended corrective action alternative is “Closure in Place with Modeling, Monitoring, and Institutional Controls.” The role of monitoring is to verify that Contaminants of Concern (COCs) have not exceeded the Safe Drinking Water Act (SDWA) limits (Code of Federal Regulations, 2014) at the regulatory boundary, to ensure that institutional controls are adequate, and to monitor for changed conditions that could affect the closure conditions. The long-term closure monitoring program will be planned and implemented as part of the Closure Report stage after activities specified in the CADD/CAP are complete. Groundwater at the NNSS has been monitored for decades through a variety of programs. Current activities were recently consolidated in an NNSS Integrated Sampling Plan (DOE, 2014). Although monitoring directed by the plan is not intended to meet the FFACO long-term monitoring requirements for a CAU (which will be defined in the Closure Report), the objective to ensure public health protection is similar. It is expected that data collected in accordance with the plan will support the transition to long-term monitoring at each

  8. An Automated Algorithm to Screen Massive Training Samples for a Global Impervious Surface Classification

    NASA Technical Reports Server (NTRS)

    Tan, Bin; Brown de Colstoun, Eric; Wolfe, Robert E.; Tilton, James C.; Huang, Chengquan; Smith, Sarah E.

    2012-01-01

    An algorithm is developed to automatically screen the outliers from massive training samples for Global Land Survey - Imperviousness Mapping Project (GLS-IMP). GLS-IMP is to produce a global 30 m spatial resolution impervious cover data set for years 2000 and 2010 based on the Landsat Global Land Survey (GLS) data set. This unprecedented high resolution impervious cover data set is not only significant to the urbanization studies but also desired by the global carbon, hydrology, and energy balance researches. A supervised classification method, regression tree, is applied in this project. A set of accurate training samples is the key to the supervised classifications. Here we developed the global scale training samples from 1 m or so resolution fine resolution satellite data (Quickbird and Worldview2), and then aggregate the fine resolution impervious cover map to 30 m resolution. In order to improve the classification accuracy, the training samples should be screened before used to train the regression tree. It is impossible to manually screen 30 m resolution training samples collected globally. For example, in Europe only, there are 174 training sites. The size of the sites ranges from 4.5 km by 4.5 km to 8.1 km by 3.6 km. The amount training samples are over six millions. Therefore, we develop this automated statistic based algorithm to screen the training samples in two levels: site and scene level. At the site level, all the training samples are divided to 10 groups according to the percentage of the impervious surface within a sample pixel. The samples following in each 10% forms one group. For each group, both univariate and multivariate outliers are detected and removed. Then the screen process escalates to the scene level. A similar screen process but with a looser threshold is applied on the scene level considering the possible variance due to the site difference. We do not perform the screen process across the scenes because the scenes might vary due to

  9. Ground-water sampling and time-series evaluation techniques to determine vertical concentration distributions

    SciTech Connect

    Cosler, D.J.

    1997-09-01

    Data analysis methodologies are developed for using time-series measurements of effluent concentrations during continuous sampling to determine the vertical shape and location of a horizontally uniform contaminant plume and to estimate physical/chemical aquifer parameters such as vertical anisotropy, effective porosity, and retardation factor. Temporal water-quality variations during constant-flow sampling are calculated in the form of concentration type curves for a wide variety of plume shapes and positions and are shown to be directly related to the geometry and growth rate of the three-dimensional capture volume of the well. An analytical type-curve solution is derived for discrete-interval sampling in homogeneous and isotropic/anisotropic aquifers containing plumes with complex vertical shapes that are described by the superposition of multiple Gaussian distributions. Results from two-dimensional, axisymmetric simulations of ground-water flow and particle transport demonstrate the sensitivity of concentration type curves to sandpack hydraulic conductivity, screen length, well diameter, flow through the well screen during discrete-interval sampling, aquifer anisotropy and heterogeneities, pumping rate, effective porosity, and chemical retardation. Two applications of the concentration type-curve method for determining plume and aquifer characteristics are presented. The first illustrates the use of discrete-interval sampling to evaluate the vertical shape and location of a hypothetical plume in a homogeneous, isotropic aquifer. In the second, extraction-well effluent data collected during a field experiment were used to evaluate the vertical concentration distribution in a sulfate plume and estimate the vertical anisotropy ratio of the aquifer. The results demonstrate the importance of developing consistency in purge and sample volumes to minimize artificial measurement variability in monitoring programs.

  10. Trace analysis of semivolatile organic compounds in large volume samples of snow, lake water, and groundwater.

    PubMed

    Usenko, Sascha; Hageman, Kimberly J; Schmedding, Dave W; Wilson, Glenn R; Simonich, Staci L

    2005-08-15

    An analytical method was developed for the trace analysis of a wide range of semivolatile organic compounds (SOCs) in 50-L high-elevation snow and lake water samples. The method was validated for 75 SOCs from seven different chemical classes (polycyclic aromatic hydrocarbons, organochlorine pesticides, amides, triazines, polychlorinated biphenyls, thiocarbamates, and phosphorothioates) that covered a wide range of physical-chemical properties including 7 orders of magnitude of octanol-water partition coefficient (log K(ow) = 1.4-8.3). The SOCs were extracted using a hydrophobically and hydrophilically modified divinylbenzene solid-phase extraction device (modified Speedisk). The average analyte recovery from 50 L of reverse osmosis water, using the modified Speedisk, was 99% with an average relative standard deviation of 4.8%. Snow samples were collected from the field, melted, and extracted using the modified Speedisk and a poly(tetrafluoroethylene) remote sample adapter in the laboratory. Lake water was sampled, filtered, and extracted in situ using an Infiltrex 100 fitted with a 1-microm glass fiber filter to trap particulate matter and the modified Speedisk to trap dissolved SOCs. The extracts were analyzed by gas chromatographic mass spectrometry with electron impact ionization and electron capture negative ionization using isotope dilution and selective ion monitoring. Estimated method detection limits for snow and lake water ranged from 0.2 to 125 pg/L and 0.5-400 pg/L, respectively. U.S. historic and current-use pesticides were identified and quantified in snow and lake water samples collected from Rocky Mountain National Park, CO. The application of the analytical method to the analysis of SOCs in large-volume groundwater samples is also shown. PMID:16173557

  11. Design and Development of a Robot-Based Automation System for Cryogenic Crystal Sample Mounting at the Advanced Photon Source

    SciTech Connect

    Shu, D.; Preissner, C.; Nocher, D.; Han, Y.; Barraza, J.; Lee, P.; Lee, W.-K.; Cai, Z.; Ginell, S.; Alkire, R.; Lazarski, K.; Schuessler, R.; Joachimiak, A.

    2004-05-12

    X-ray crystallography is the primary method to determine the 3D structures of complex macromolecules at high resolution. In the years to come, the Advanced Photon Source (APS) and similar 3rd-generation synchrotron sources elsewhere will become the most powerful tools for studying atomic structures of biological molecules. One of the major bottlenecks in the x-ray data collection process is the constant need to change and realign the crystal sample. This is a very time- and manpower-consuming task. An automated sample mounting system will help to solve this bottleneck problem. We have developed a novel robot-based automation system for cryogenic crystal sample mounting at the APS. Design of the robot-based automation system, as well as its on-line test results at the Argonne Structural Biology Center (SBC) 19-BM experimental station, are presented in this paper.

  12. Importance of closely spaced vertical sampling in delineating chemical and microbiological gradients in groundwater studies

    USGS Publications Warehouse

    Smith, R.L.; Harvey, R.W.; LeBlanc, D.R.

    1991-01-01

    Vertical gradients of selected chemical constituents, bacterial populations, bacterial activity and electron acceptors were investigated for an unconfined aquifer contaminated with nitrate and organic compounds on Cape Cod, Massachusetts, U.S.A. Fifteen-port multilevel sampling devices (MLS's) were installed within the contaminant plume at the source of the contamination, and at 250 and 2100 m downgradient from the source. Depth profiles of specific conductance and dissolved oxygen at the downgradient sites exhibited vertical gradients that were both steep and inversely related. Narrow zones (2-4 m thick) of high N2O and NH4+ concentrations were also detected within the contaminant plume. A 27-fold change in bacterial abundance; a 35-fold change in frequency of dividing cells (FDC), an indicator of bacterial growth; a 23-fold change in 3H-glucose uptake, a measure of heterotrophic activity; and substantial changes in overall cell morphology were evident within a 9-m vertical interval at 250 m downgradient. The existence of these gradients argues for the need for closely spaced vertical sampling in groundwater studies because small differences in the vertical placement of a well screen can lead to incorrect conclusions about the chemical and microbiological processes within an aquifer.Vertical gradients of selected chemical constituents, bacterial populations, bacterial activity and electron acceptors were investigated for an unconfined aquifer contaminated with nitrate and organic compounds on Cape Cod, Massachusetts, USA. Fifteen-port multilevel sampling devices (MLS's) were installed within the contaminant plume at the source of the contamination, and at 250 and 2100 m downgradient from the source. Depth profiles of specific conductance and dissolved oxygen at the downgradient sites exhibited vertical gradients that were both steep and inversely related. Narrow zones (2-4 m thick) of high N2O and NH4+ concentrations were also detected within the contaminant plume

  13. Development and verification of an automated sample processing protocol for quantitation of human immunodeficiency virus type 1 RNA in plasma.

    PubMed

    Lee, Brenda G; Fiebelkorn, Kristin R; Caliendo, Angela M; Nolte, Frederick S

    2003-05-01

    We developed and verified an automated sample processing protocol for use with the AMPLICOR HIV-1 MONITOR test, version 1.5 (Roche Diagnostics, Indianapolis, Ind.). The automated method uses the MagNA Pure LC instrument and total nucleic acid reagents (Roche Applied Science, Indianapolis, Ind.) to extract human immunodeficiency virus type 1 (HIV-1) RNA from plasma specimens. We compared the HIV-1 load results for a dilution series (1 to 5 nominal log(10) copies/ml) and 175 clinical specimens processed by the automated method to those for the same samples processed by the manual methods specified by the manufacturer. The sensitivity, dynamic range, and precision of the viral load assay obtained by automated processing of specimens were similar to those obtained by an ultrasensitive manual processing method. The results were highly correlated (R(2), 0.95), and were in close agreement, with a mean difference of 0.09 log(10) (standard deviation, 0.292). The limits of agreement were +/-0.58 log(10) for results for samples processed by both the manual and the automated methods. These performance characteristics were achieved with a smaller sample volume (200 versus 500 microl) and without a high-speed centrifugation step and required only 15 min of labor for a batch of 32 samples. In conclusion, the automated sample preparation protocol can replace both the standard and the ultrasensitive manual methods used with the AMPLICOR HIV-1 MONITOR test and can substantially reduce the labor associated with this test. PMID:12734249

  14. Automated system for sampling, counting, and biological analysis of rotifer populations

    PubMed Central

    Stelzer, Claus-Peter

    2010-01-01

    Zooplankton organisms with short generation times, such as rotifers, are ideal models to study general ecological and evolutionary questions on the population level, because meaningful experiments can often be completed within a couple of weeks. Yet biological analysis of such populations is often extremely time consuming, owing to abundance estimation by counting, measuring body size, or determining the investment into sexual versus asexual reproduction. An automated system for sampling and analyzing experimental rotifer populations is described. It relies on image analysis of digital photographs taken from subsamples of the culture. The system works completely autonomously for up to several weeks and can sample up to 12 cultures at time intervals down to a few hours. It allows quantitative analysis of female population density at a precision equivalent to that of conventional methods (i.e., manual counts of samples fixed in Lugol solution), and it can also recognize males, which allows detecting temporal variation of sexual reproduction in such cultures. Another parameter that can be automatically measured with the image analysis system is female body size. This feature may be useful for studies of population productivity and/or in competition experiments with clones of different body size. In this article, I describe the basic setup of the system and tests on the efficiency of data collection, and show some example data sets on the population dynamics of different strains of the rotifer Brachionus calyciflorus. PMID:21151824

  15. Determination of 90Sr and Pu isotopes in contaminated groundwater samples by inductively coupled plasma mass spectrometry

    NASA Astrophysics Data System (ADS)

    Zoriy, Miroslav V.; Ostapczuk, Peter; Halicz, Ludwik; Hille, Ralf; Becker, J. Sabine

    2005-04-01

    A sensitive analytical method for determining the artificial radionuclides 90Sr, 239Pu and 240Pu at the ultratrace level in groundwater samples from the Semipalatinsk Test Site area in Kazakhstan by double-focusing sector field inductively coupled plasma mass spectrometry (ICP-SFMS) was developed. In order to avoid possible isobaric interferences at m/z 90 for 90Sr determination (e.g. 90Zr+, 40Ar50Cr+, 36Ar54Fe+, 58Ni16O2+, 180Hf2+, etc.), the measurements were performed at medium mass resolution under cold plasma conditions. Pu was separated from uranium by means of extraction chromatography using Eichrom TEVA resin with a recovery of 83%. The limits of detection for 90Sr, 239Pu and 240Pu in water samples were determined as 11, 0.12 and 0.1 fg ml-1, respectively. Concentrations of 90Sr and 239Pu in contaminated groundwater samples ranged from 18 to 32 and from 28 to 856 fg ml-1, respectively. The 240Pu/239Pu isotopic ratio in groundwater samples was measured as 0.17. This isotope ratio indicates that the most probable source of contamination of the investigated groundwater samples was the nuclear weapons tests at the Semipalatinsk Test Site conducted by the USSR in the 1960s.

  16. Renewable Microcolumns for Automated DNA Purification and Flow-through Amplification: From Sediment Samples through Polymerase Chain Reaction

    SciTech Connect

    Bruckner-Lea, Cindy J. ); Tsukuda, Toyoko ); Dockendorff, Brian P. ); Follansbee, James C. ); Kingsley, Mark T. ); Ocampo, Catherine O.; Stults, Jennie R.; Chandler, Darrell P.

    2001-12-01

    There is an increasing need for field-portable systems for the detection and characterization of microorganisms in the environment. Nucleic acids analysis is frequently the method of choice for discriminating between bacteria in complex systems, but standard protocols are difficult to automate and current microfluidic devices are not configured specifically for environmental sample analysis. In this report, we describe the development of an integrated DNA purification and PCR amplification system and demonstrate its use for the automated purification and amplification of Geobacter chapelli DNA (genomic DNA or plasmid targets) from sediments. The system includes renewable separation columns for the automated capture and release of microparticle purification matrices, and can be easily reprogrammed for new separation chemistries and sample types. The DNA extraction efficiency for the automated system ranged from 3 to 25 percent, depending on the length and concentration of the DNA target . The system was more efficient than batch capture methods for the recovery of dilute genomic DNA even though the reagen volumes were smaller than required for the batch procedure. The automated DNA concentration and purification module was coupled to a flow-through, Peltier-controlled DNA amplification chamber, and used to successfully purify and amplify genomic and plasmid DNA from sediment extracts. Cleaning protocols were also developed to allow reuse of the integrated sample preparation system, including the flow-through PCR tube.

  17. Erratum to: Automated Sample Preparation Method for Suspension Arrays using Renewable Surface Separations with Multiplexed Flow Cytometry Fluorescence Detection

    SciTech Connect

    Grate, Jay W.; Bruckner-Lea, Cindy J.; Jarrell, Ann E.; Chandler, Darrell P.

    2003-04-10

    In this paper we describe a new method of automated sample preparation for multiplexed biological analysis systems that use flow cytometry fluorescence detection. In this approach, color-encoded microspheres derivatized to capture particular biomolecules are temporarily trapped in a renewable surface separation column to enable perfusion with sample and reagents prior to delivery to the detector. This method provides for separation of the biomolecules of interest from other sample matrix components as well as from labeling solutions.

  18. Ground-water quality in east-central New Jersey, and a plan for sampling networks

    USGS Publications Warehouse

    Harriman, D.A.; Sargent, B.P.

    1985-01-01

    Groundwater quality was evaluated in seven confined aquifers and the water table aquifer in east-central New Jersey based on 237 analyses of samples collected in 1981-82, and 225 older analyses. Investigation of the effect of land use on water quality and several sampling network proposals for the region are reported. Generally, water in the confined aquifers is of satisfactory quality for human consumption and most other uses. Iron (Fe) and manganese (Mn) concentrations exceed U.S. EPA drinking water standards in some wells screened in the Potomac-Raritan-Magothy aquifer system. Sodium (Na) concentrations in samples from three wells more than 800 ft deep in the Englishtown aquifer exceed the standard. Iron and Mn concentrations in this aquifer may also exceed the standards. Iron concentrations in the Wenonah-Mount Laurel aquifer exceed the standard. Based on 15 analyses of water from the Vincetown aquifer, Mn is the only constituent that exceeds the drinking water standard. In the Manasquan aquifer, 4 of the 16 Na determinations exceed the standard, and 8 of 16 Fe determinations exceed the standard. Water quality in the Atlantic City 800-ft sand is generally satisfactory. However, 12 Fe and 1 of 12 Mn determinations exceed the standards. For the Rio Grande water-bearing zone, 1 of 3 Fe determinations exceed the standard. The Kirkwood-Cohansey aquifer system (the water table aquifer) was the most thoroughly sampled (249 chemical analyses from 209 wells). Dissolved solids, chloride, Fe, nitrate, and Mn concentrations exceed drinking water standards in some areas. The results of chi-square tests of constituent distributions based on analyses from 158 wells in the water table aquifer indicate that calcium is higher in industrial and commercial areas; and Mg, chloride, and nitrate-plus-nitrite is higher in residential areas. (Author 's abstract)

  19. Comparison of soil solution sampling techniques to assess metal fluxes from contaminated soil to groundwater.

    PubMed

    Coutelot, F; Sappin-Didier, V; Keller, C; Atteia, O

    2014-12-01

    The unsaturated zone plays a major role in elemental fluxes in terrestrial ecosystems. A representative chemical analysis of soil pore water is required for the interpretation of soil chemical phenomena and particularly to assess Trace Elements (TEs) mobility. This requires an optimal sampling system to avoid modification of the extracted soil water chemistry and allow for an accurate estimation of solute fluxes. In this paper, the chemical composition of soil solutions sampled by Rhizon® samplers connected to a standard syringe was compared to two other types of suction probes (Rhizon® + vacuum tube and Rhizon® + diverted flow system). We investigated the effects of different vacuum application procedures on concentrations of spiked elements (Cr, As, Zn) mixed as powder into the first 20 cm of 100-cm columns and non-spiked elements (Ca, Na, Mg) concentrations in two types of columns (SiO2 sand and a mixture of kaolinite + SiO2 sand substrates). Rhizon® was installed at different depths. The metals concentrations showed that (i) in sand, peak concentrations cannot be correctly sampled, thus the flux cannot be estimated, and the errors can easily reach a factor 2; (ii) in sand + clay columns, peak concentrations were larger, indicating that they could be sampled but, due to sorption on clay, it was not possible to compare fluxes at different depths. The different samplers tested were not able to reflect the elemental flux to groundwater and, although the Rhizon® + syringe device was more accurate, the best solution remains to be the use of a lysimeter, whose bottom is kept continuously at a suction close to the one existing in the soil. PMID:25277861

  20. The Upgrade Programme for the Structural Biology beamlines at the European Synchrotron Radiation Facility - High throughput sample evaluation and automation

    NASA Astrophysics Data System (ADS)

    Theveneau, P.; Baker, R.; Barrett, R.; Beteva, A.; Bowler, M. W.; Carpentier, P.; Caserotto, H.; de Sanctis, D.; Dobias, F.; Flot, D.; Guijarro, M.; Giraud, T.; Lentini, M.; Leonard, G. A.; Mattenet, M.; McCarthy, A. A.; McSweeney, S. M.; Morawe, C.; Nanao, M.; Nurizzo, D.; Ohlsson, S.; Pernot, P.; Popov, A. N.; Round, A.; Royant, A.; Schmid, W.; Snigirev, A.; Surr, J.; Mueller-Dieckmann, C.

    2013-03-01

    Automation and advances in technology are the key elements in addressing the steadily increasing complexity of Macromolecular Crystallography (MX) experiments. Much of this complexity is due to the inter-and intra-crystal heterogeneity in diffraction quality often observed for crystals of multi-component macromolecular assemblies or membrane proteins. Such heterogeneity makes high-throughput sample evaluation an important and necessary tool for increasing the chances of a successful structure determination. The introduction at the ESRF of automatic sample changers in 2005 dramatically increased the number of samples that were tested for diffraction quality. This "first generation" of automation, coupled with advances in software aimed at optimising data collection strategies in MX, resulted in a three-fold increase in the number of crystal structures elucidated per year using data collected at the ESRF. In addition, sample evaluation can be further complemented using small angle scattering experiments on the newly constructed bioSAXS facility on BM29 and the micro-spectroscopy facility (ID29S). The construction of a second generation of automated facilities on the MASSIF (Massively Automated Sample Screening Integrated Facility) beam lines will build on these advances and should provide a paradigm shift in how MX experiments are carried out which will benefit the entire Structural Biology community.

  1. Automation and integration of multiplexed on-line sample preparation with capillary electrophoresis for DNA sequencing

    SciTech Connect

    Tan, H.

    1999-03-31

    The purpose of this research is to develop a multiplexed sample processing system in conjunction with multiplexed capillary electrophoresis for high-throughput DNA sequencing. The concept from DNA template to called bases was first demonstrated with a manually operated single capillary system. Later, an automated microfluidic system with 8 channels based on the same principle was successfully constructed. The instrument automatically processes 8 templates through reaction, purification, denaturation, pre-concentration, injection, separation and detection in a parallel fashion. A multiplexed freeze/thaw switching principle and a distribution network were implemented to manage flow direction and sample transportation. Dye-labeled terminator cycle-sequencing reactions are performed in an 8-capillary array in a hot air thermal cycler. Subsequently, the sequencing ladders are directly loaded into a corresponding size-exclusion chromatographic column operated at {approximately} 60 C for purification. On-line denaturation and stacking injection for capillary electrophoresis is simultaneously accomplished at a cross assembly set at {approximately} 70 C. Not only the separation capillary array but also the reaction capillary array and purification columns can be regenerated after every run. DNA sequencing data from this system allow base calling up to 460 bases with accuracy of 98%.

  2. Analysis of zearalenone in cereal and Swine feed samples using an automated flow-through immunosensor.

    PubMed

    Urraca, Javier L; Benito-Peña, Elena; Pérez-Conde, Concepción; Moreno-Bondi, María C; Pestka, James J

    2005-05-01

    The development of a sensitive flow-though immunosensor for the analysis of the mycotoxin zearalenone in cereal samples is described. The sensor was completely automated and was based on a direct competitive immunosorbent assay and fluorescence detection. The mycotoxin competes with a horseradish-peroxidase-labeled derivative for the binding sites of a rabbit polyclonal antibody. Control pore glass covalently bound to Prot A was used for the oriented immobilization of the antibody-antigen immunocomplexes. The immunosensor shows an IC(50) value of 0.087 ng mL(-1) (RSD = 2.8%, n = 6) and a dynamic range from 0.019 to 0.422 ng mL(-1). The limit of detection (90% of blank signal) of 0.007 ng mL(-1) (RSD = 3.9%, n = 3) is lower than previously published methods. Corn, wheat, and swine feed samples have been analyzed with the device after extraction of the analyte using accelerated solvent extraction (ASE). The immunosensor has been validated using a corn certificate reference material and HPLC with fluorescence detection. PMID:15853369

  3. Plasma cortisol and noradrenalin concentrations in pigs: automated sampling of freely moving pigs housed in PigTurn versus manually sampled and restrained pigs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Minimizing the effects of restraint and human interaction on the endocrine physiology of animals is essential for collection of accurate physiological measurements. Our objective was to compare stress-induced cortisol (CORT) and noradrenalin (NorA) responses in automated versus manual blood sampling...

  4. Plasma cortisol and norepinephrine concentrations in pigs: automated sampling of freely moving pigs housed in the PigTurn versus manually sampled and restrained pigs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Minimizing effects of restraint and human interaction on the endocrine physiology of animals is essential for collection of accurate physiological measurements. Our objective was to compare stress-induced cortisol (CORT) and norepinephrine (NE) responses in automated versus manual blood sampling. A ...

  5. CARBONATE EQUILIBRIA AND GROUNDWATER SAMPLE COLLECTION: IMPLICATIONS FOR ESTIMATED AVERAGE SUBSURFACE PROPERTIES IN CONTINENTAL NORTH AMERICA

    EPA Science Inventory

    The geochemistry of carbon dioxide in oxygenated groundwater may have a profound impact on analytical results obtained from efforts to measure in situ groundwater pH conditions and on the speciation, partitioning behavior and potential transport of inorganic contaminants in aquif...

  6. California GAMA Special Study. Development of a Capability for the Analysis of Krypton-85 in Groundwater Samples

    SciTech Connect

    Visser, Ate; Bibby, Richard K.; Moran, Jean E.; Singleton, Michael J.; Esser, Bradley K.

    2015-06-01

    A capability for the analysis of krypton-85 (85Kr) in groundwater samples was developed at LLNL. Samples are collected by extracting gas from 2000-4000 L of groundwater at the well, yielding approximately 0.2 cm3 STP krypton. Sample collection takes 1 to 4 hours. Krypton is purified in the laboratory using a combination of molecular sieve and activated charcoal traps, and transferred to a liquid scintillation vial. The 85Kr activity is measured by liquid scintillation on a Quantulus 1220 liquid scintillation counter from PerkinElmer. The detection limit for a typical 0.2 cm3Kr sample size is 11% of the present day activity in air, corresponding to the decay corrected activity in air in 1987. The typical measurement uncertainty is below 10% for recently recharged samples. Six groundwater samples were collected, purified and counted. 85Kr was not detected in any of the samples counted at LLNL. 85Kr was detected by the low level counting laboratory of Bern University in all samples between 1.5 and 6.6 decays per minute per cm3 krypton, corresponding to decay corrected activities in air between 1971 and 1985. The new capability is an excellent complement to tritium-helium, expanding the existing suite of age dating tools available to the GAMA program (35S, 3H/3He, 14C and radiogenic helium). 85Kr can replace 3H/3He in settings where 3H/3He ages are impossible to determine (for example where terrigenic helium overwhelms tritiogenic helium) and provides additional insight into travel time distributions in complex mixed groundwater systems.

  7. Rapid magnetic bead based sample preparation for automated and high throughput N-glycan analysis of therapeutic antibodies.

    PubMed

    Váradi, Csaba; Lew, Clarence; Guttman, András

    2014-06-17

    Full automation to enable high throughput N-glycosylation profiling and sequencing with good reproducibility is vital to fulfill the contemporary needs of the biopharmaceutical industry and requirements of national regulatory agencies. The most prevalently used glycoanalytical methods of capillary electrophoresis and hydrophilic interaction liquid chromatography, while very efficient, both necessitate extensive sample preparation and cleanup, including glycoprotein capture, N-glycan release, fluorescent derivatization, purification, and preconcentration steps during the process. Currently used protocols to fulfill these tasks require multiple centrifugation and vacuum-centrifugation steps, making liquid handling robot mediated automated sample preparation difficult and expensive. In this paper we report on a rapid magnetic bead based sample preparation approach that enables full automation including all the process phases just in a couple of hours without requiring any centrifugation and/or vacuum centrifugation steps. This novel protocol has been compared to conventional glycan sample preparation strategies using standard glycoproteins (IgG, fetuin, and RNase B) and featured rapid processing time, high release and labeling efficiency, good reproducibility, and the potential of easy automation. PMID:24909945

  8. AST: An Automated Sequence-Sampling Method for Improving the Taxonomic Diversity of Gene Phylogenetic Trees

    PubMed Central

    Zhou, Chan; Mao, Fenglou; Yin, Yanbin; Huang, Jinling; Gogarten, Johann Peter; Xu, Ying

    2014-01-01

    A challenge in phylogenetic inference of gene trees is how to properly sample a large pool of homologous sequences to derive a good representative subset of sequences. Such a need arises in various applications, e.g. when (1) accuracy-oriented phylogenetic reconstruction methods may not be able to deal with a large pool of sequences due to their high demand in computing resources; (2) applications analyzing a collection of gene trees may prefer to use trees with fewer operational taxonomic units (OTUs), for instance for the detection of horizontal gene transfer events by identifying phylogenetic conflicts; and (3) the pool of available sequences is biased towards extensively studied species. In the past, the creation of subsamples often relied on manual selection. Here we present an Automated sequence-Sampling method for improving the Taxonomic diversity of gene phylogenetic trees, AST, to obtain representative sequences that maximize the taxonomic diversity of the sampled sequences. To demonstrate the effectiveness of AST, we have tested it to solve four problems, namely, inference of the evolutionary histories of the small ribosomal subunit protein S5 of E. coli, 16 S ribosomal RNAs and glycosyl-transferase gene family 8, and a study of ancient horizontal gene transfers from bacteria to plants. Our results show that the resolution of our computational results is almost as good as that of manual inference by domain experts, hence making the tool generally useful to phylogenetic studies by non-phylogeny specialists. The program is available at http://csbl.bmb.uga.edu/~zhouchan/AST.php. PMID:24892935

  9. Computerized Analytical Data Management System and Automated Analytical Sample Transfer System at the COGEMA Reprocessing Plants in La Hague

    SciTech Connect

    Flament, T.; Goasmat, F.; Poilane, F.

    2002-02-25

    Managing the operation of large commercial spent nuclear fuel reprocessing plants, such as UP3 and UP2-800 in La Hague, France, requires an extensive analytical program and the shortest possible analysis response times. COGEMA, together with its engineering subsidiary SGN, decided to build high-performance laboratories to support operations in its plants. These laboratories feature automated equipment, safe environments for operators, and short response times, all in centralized installations. Implementation of a computerized analytical data management system and a fully automated pneumatic system for the transfer of radioactive samples was a key factor contributing to the successful operation of the laboratories and plants.

  10. High-Throughput Serum 25-Hydroxy Vitamin D Testing with Automated Sample Preparation.

    PubMed

    Stone, Judy

    2016-01-01

    Serum from bar-coded tubes, and then internal standard, are pipetted to 96-well plates with an 8-channel automated liquid handler (ALH). The first precipitation reagent (methanol:ZnSO4) is added and mixed with the 8-channel ALH. A second protein precipitating agent, 1 % formic acid in acetonitrile, is added and mixed with a 96-channel ALH. After a 4-min delay for larger precipitates to settle to the bottom of the plate, the upper 36 % of the precipitate/supernatant mix is transferred with the 96-channel ALH to a Sigma Hybrid SPE(®) plate and vacuumed through for removal of phospholipids and precipitated proteins. The filtrate is collected in a second 96-well plate (collection plate) which is foil-sealed, placed in the autosampler (ALS), and injected into a multiplexed LC-MS/MS system running AB Sciex Cliquid(®) and MPX(®) software. Two Shimadzu LC stacks, with multiplex timing controlled by MPX(®) software, inject alternately to one AB Sciex API-5000 MS/MS using positive atmospheric pressure chemical ionization (APCI) and a 1.87 min water/acetonitrile LC gradient with a 2.1 × 20 mm, 2.7 μm, C18 fused core particle column (Sigma Ascentis Express). LC-MS/MS through put is ~44 samples/h/LC-MS/MS system with dual-LC channel multiplexing. Plate maps are transferred electronically from the ALH and reformatted into LC-MS/MS sample table format using the Data Innovations LLC (DI) Instrument Manager middleware application. Before collection plates are loaded into the ALS, the plate bar code is manually scanned to download the sample table from the DI middleware to the LC-MS/MS. After acquisition-LC-MS/MS data is analyzed with AB Sciex Multiquant(®) software using customized queries, and then results are transferred electronically via a DI interface to the LIS. 2500 samples/day can be extracted by two analysts using four ALHs in 4-6 h. LC-MS/MS analysis of those samples on three dual-channel LC multiplexed LC-MS/MS systems requires 19-21 h and data analysis can be

  11. Correction of an input function for errors introduced with automated blood sampling

    SciTech Connect

    Schlyer, D.J.; Dewey, S.L.

    1994-05-01

    Accurate kinetic modeling of PET data requires an precise arterial plasma input function. The use of automated blood sampling machines has greatly improved the accuracy but errors can be introduced by the dispersion of the radiotracer in the sampling tubing. This dispersion results from three effects. The first is the spreading of the radiotracer in the tube due to mass transfer. The second is due to the mechanical action of the peristaltic pump and can be determined experimentally from the width of a step function. The third is the adsorption of the radiotracer on the walls of the tubing during transport through the tube. This is a more insidious effect since the amount recovered from the end of the tube can be significantly different than that introduced into the tubing. We have measured the simple mass transport using [{sup 18}F]fluoride in water which we have shown to be quantitatively recovered with no interaction with the tubing walls. We have also carried out experiments with several radiotracers including [{sup 18}F]Haloperidol, [{sup 11}C]L-deprenyl, [{sup 18}]N-methylspiroperidol ([{sup 18}F]NMS) and [{sup 11}C]buprenorphine. In all cases there was some retention of the radiotracer by untreated silicone tubing. The amount retained in the tubing ranged from 6% for L-deprenyl to 30% for NMS. The retention of the radiotracer was essentially eliminated after pretreatment with the relevant unlabeled compound. For example less am 2% of the [{sup 18}F]NMS was retained in tubing treated with unlabelled NMS. Similar results were obtained with baboon plasma although the amount retained in the untreated tubing was less in all cases. From these results it is possible to apply a mathematical correction to the measured input function to account for mechanical dispersion and to apply a chemical passivation to the tubing to reduce the dispersion due to adsorption of the radiotracer on the tubing walls.

  12. Performance verification of the Maxwell 16 Instrument and DNA IQ Reference Sample Kit for automated DNA extraction of known reference samples.

    PubMed

    Krnajski, Z; Geering, S; Steadman, S

    2007-12-01

    Advances in automation have been made for a number of processes conducted in the forensic DNA laboratory. However, because most robotic systems are designed for high-throughput laboratories batching large numbers of samples, smaller laboratories are left with a limited number of cost-effective options for employing automation. The Maxwell 16 Instrument and DNA IQ Reference Sample Kit marketed by Promega are designed for rapid, automated purification of DNA extracts from sample sets consisting of sixteen or fewer samples. Because the system is based on DNA capture by paramagnetic particles with maximum binding capacity, it is designed to generate extracts with yield consistency. The studies herein enabled evaluation of STR profile concordance, consistency of yield, and cross-contamination performance for the Maxwell 16 Instrument. Results indicate that the system performs suitably for streamlining the process of extracting known reference samples generally used for forensic DNA analysis and has many advantages in a small or moderate-sized laboratory environment. PMID:25869266

  13. Groundwater and Leachate Monitoring and Sampling at the Environmental Restoration Disposal Facility, Calendar Year 2005

    SciTech Connect

    D.A. St. John, R.L. Weiss

    2006-05-04

    The purpose of this annual monitoring report is to evaluate the conditions of and identify trends for groundwater beneath the ERDF and to report leachate results in accordance with the requirements specified in the ERDF ROD.

  14. Automated, low-temperature dielectric relaxation apparatus for measurement of air-sensitive, corrosive, hygroscopic, powdered samples

    NASA Astrophysics Data System (ADS)

    Bessonette, Paul W. R.; White, Mary Anne

    1999-07-01

    An automated apparatus for dielectric determinations on solid samples was designed to allow cryogenic measurements on air-sensitive, corrosive, hygroscopic, powdered samples, without determination of sample thickness, provided that it is uniform. A three-terminal design enabled measurements that were not affected by errors due to dimensional changes of the sample or the electrodes with changes in temperature. Meaningful dielectric data could be taken over the frequency range from 20 Hz to 1 MHz and the temperature range from 12 to 360 K. Tests with Teflon and with powdered NH4Cl gave results that were accurate within a few percent when compared with literature values.

  15. Review of available fluid sampling tools and sample recovery techniques for groundwater and unconventional geothermal research as well as carbon storage in deep sedimentary aquifers

    NASA Astrophysics Data System (ADS)

    Wolff-Boenisch, Domenik; Evans, Katy

    2014-05-01

    Sampling fluids from deep wells and subsequent sample treatment prior to gas and liquid analysis requires special equipment and sampling techniques to account for the relatively high temperatures, pressures, and potential gas content present at depth. This paper reviews five major sampling methodologies, ranging from different in situ wireline samplers to producing pumps and the U-tube and discusses their advantages and drawbacks in the light of three principal applications, deep groundwater research, unconventional geothermal exploration, and carbon storage. Geochemical modelling is used to investigate the probability of decarbonation and concomitant carbonate scaling during sampling in geothermal and carbon sequestration applications. The two principal sample recovery techniques associated with the fluid samplers are also presented.

  16. Method and Apparatus for Automated Isolation of Nucleic Acids from Small Cell Samples

    NASA Technical Reports Server (NTRS)

    Sundaram, Shivshankar; Prabhakarpandian, Balabhaskar; Pant, Kapil; Wang, Yi

    2014-01-01

    RNA isolation is a ubiquitous need, driven by current emphasis on microarrays and miniaturization. With commercial systems requiring 100,000 to 1,000,000 cells for successful isolation, there is a growing need for a small-footprint, easy-to-use device that can harvest nucleic acids from much smaller cell samples (1,000 to 10,000 cells). The process of extraction of RNA from cell cultures is a complex, multi-step one, and requires timed, asynchronous operations with multiple reagents/buffers. An added complexity is the fragility of RNA (subject to degradation) and its reactivity to surface. A novel, microfluidics-based, integrated cartridge has been developed that can fully automate the complex process of RNA isolation (lyse, capture, and elute RNA) from small cell culture samples. On-cartridge cell lysis is achieved using either reagents or high-strength electric fields made possible by the miniaturized format. Traditionally, silica-based, porous-membrane formats have been used for RNA capture, requiring slow perfusion for effective capture. In this design, high efficiency capture/elution are achieved using a microsphere-based "microfluidized" format. Electrokinetic phenomena are harnessed to actively mix microspheres with the cell lysate and capture/elution buffer, providing important advantages in extraction efficiency, processing time, and operational flexibility. Successful RNA isolation was demonstrated using both suspension (HL-60) and adherent (BHK-21) cells. Novel features associated with this development are twofold. First, novel designs that execute needed processes with improved speed and efficiency were developed. These primarily encompass electric-field-driven lysis of cells. The configurations include electrode-containing constructs, or an "electrode-less" chip design, which is easy to fabricate and mitigates fouling at the electrode surface; and the "fluidized" extraction format based on electrokinetically assisted mixing and contacting of microbeads

  17. Smart Combinatorial Research Equipment (SmartCoRE) for Sample Environmental Control and Automated Analysis with Optical Methods

    NASA Astrophysics Data System (ADS)

    Church, Matthew; Ding, Xiaodong; Nantel, Norman

    2012-02-01

    Combinatorial research (CR) has revolutionized the way research is done in every major chemistry, physics and material science laboratory. We propose to bring the same success of automation and capabilities of CR to a widely used technique, small- and wide- angle x-ray scattering (SAXS/WAXS) through our development of a small, modular sample environmental chamber with embedded control electronics that can easily be used in large arrays. The device however is not restricted to a SAXS/WAXS techniques as it can easily be adapted to almost any kind of small volume sample prep or optical analysis technique requiring control of basic sample environmental parameters such as temperature, atmosphere, light and electromagnetic fields. The prototype has the following capabilities: 1. Automated switching of external electronic instrumentation between modules. 2. Thermoelectric temperature control from -50 to 200 C. 3. Ports for gas flow through or evacuation of sample environment. 4. Sealed sample environment using minimally scattering window material. 5. 90 degree field of view of both sides of sample. 6. Optional fiber-optic connections for UV-Vis spectroscopy. 7. Optional GISAXS mounting geometry. 8. Optional liquid sample flow cell.

  18. Biogeochemical processing of nutrients in groundwater-fed stream during baseflow conditions - the value of fluorescence spectroscopy and automated high-frequency nutrient monitoring

    NASA Astrophysics Data System (ADS)

    Bieroza, Magdalena; Heathwaite, Louise

    2014-05-01

    Recent research in groundwater-dominated streams indicates that organic matter plays an important role in nutrient transformations at the surface-groundwater interface known as the hyporheic zone. Mixing of water and nutrient fluxes in the hyporheic zone controls in-stream nutrients availability, dynamics and export to downstream reaches. In particular, benthic sediments can form adsorptive sinks for organic matter and reactive nutrients (nitrogen and phosphorus) that sustain a variety of hyporheic processes e.g. denitrification, microbial uptake. Thus, hyporheic metabolism can have an important effect on both quantity (concentration) and quality (labile vs. refractory character) of organic matter. Here high-frequency nutrient monitoring combined with spectroscopic analysis was used to provide insights into biogeochemical processing of a small, agricultural stream in the NE England subject to diffuse nutrient pollution. Biogeochemical data were collected hourly for a week at baseflow conditions when in-stream-hyporheic nutrient dynamics have the greatest impact on stream health. In-stream nutrients (total phosphorus, reactive phosphorus, nitrate nitrogen) and water quality parameters (turbidity, specific conductivity, pH, temperature, dissolved oxygen, redox potential) were measured in situ hourly by an automated bank-side laboratory. Concurrent hourly autosamples were retrieved daily and analysed for nutrients and fine sediments including spectroscopic analyses of dissolved organic matter - excitation-emission matrix (EEM) fluorescence spectroscopy and ultraviolet-visible (UV-Vis) absorbance spectroscopy. Our results show that organic matter can potentially be utilised as a natural, environmental tracer of the biogeochemical processes occurring at the surface-groundwater interface in streams. High-frequency spectroscopic characterisation of in-stream organic matter can provide useful quantitative and qualitative information on fluxes of reactive nutrients in

  19. Analysis of highly polar compounds in groundwater samples from ammunition waste sites. Part I-Characterization of the pollutant spectrum.

    PubMed

    Preiss, Alfred; Elend, Manfred; Gerling, Susanne; Tränckner, Simone

    2005-09-01

    Five groundwater samples from the former ammunition production site at Elsnig, Germany, were analyzed for highly polar components by LC-NMR and LC-MS. A variety of unknown pollutants could be identified. Possibilities and limitations of the combined use of LC-NMR and LC-MS techniques for on-line identification are discussed. Further unknown components were identified through isolation by HPLC cuts and off-line NMR and MS investigations. Most of the polar compounds in the investigated samples could also be quantified. PMID:16049958

  20. Methods to characterize environmental settings of stream and groundwater sampling sites for National Water-Quality Assessment

    USGS Publications Warehouse

    Nakagaki, Naomi; Hitt, Kerie J.; Price, Curtis V.; Falcone, James A.

    2012-01-01

    Characterization of natural and anthropogenic features that define the environmental settings of sampling sites for streams and groundwater, including drainage basins and groundwater study areas, is an essential component of water-quality and ecological investigations being conducted as part of the U.S. Geological Survey's National Water-Quality Assessment program. Quantitative characterization of environmental settings, combined with physical, chemical, and biological data collected at sampling sites, contributes to understanding the status of, and influences on, water-quality and ecological conditions. To support studies for the National Water-Quality Assessment program, a geographic information system (GIS) was used to develop a standard set of methods to consistently characterize the sites, drainage basins, and groundwater study areas across the nation. This report describes three methods used for characterization-simple overlay, area-weighted areal interpolation, and land-cover-weighted areal interpolation-and their appropriate applications to geographic analyses that have different objectives and data constraints. In addition, this document records the GIS thematic datasets that are used for the Program's national design and data analyses.

  1. Automated sample preparation for radiogenic and non-traditional metal isotope analysis by MC-ICP-MS

    NASA Astrophysics Data System (ADS)

    Field, M. P.; Romaniello, S. J.; Gordon, G. W.; Anbar, A. D.

    2012-12-01

    High throughput analysis is becoming increasingly important for many applications of radiogenic and non-traditional metal isotopes. While MC-ICP-MS instruments offer the potential for very high sample throughout, the requirement for labor-intensive sample preparation and purification procedures remains a substantial bottleneck. Current purification protocols require manually feeding gravity-driven separation columns, a process that is both costly and time consuming. This bottleneck is eliminated with the prepFAST-MC™, an automated, low-pressure ion exchange chromatography system that can process from 1 to 60 samples in unattended operation. The syringe-driven system allows sample loading, multiple acid washes, column conditioning and elution cycles necessary to isolate elements of interest and automatically collect up to 3 discrete eluent fractions at user-defined intervals (time, volume and flow rate). Newly developed protocols for automated purification of uranium illustrates high throughput (>30 per run), multiple samples processed per column (>30), complete (>99%) matrix removal, high recovery (> 98%, n=25), and excellent precision (2 sigma =0.03 permil, n=10). The prepFAST-MC™ maximizes sample throughput and minimizes costs associated with personnel and consumables providing an opportunity to greatly expand research horizons in fields where large isotopic data sets are required, including archeology, geochemistry, and climate/environmental science

  2. Determination of rare-earth elements in geological and environmental samples using an automated batch preconcentration/matrix elimination system

    SciTech Connect

    Smith, F.G.; Wiederin, D.R.; Mortlock, R.

    1994-12-31

    Determination of the rare earth elements is important in the study of sedimentary processes. Geological and environmental samples often contain very low levels of these elements, and detection by plasma spectroscopy (ICP-AES, ICP-MS) is difficult unless a preconcentration and/or matrix elimination procedure is performed prior to analysis.; An automated batch preconcentration/matrix elimination system offers rapid, off-line sample preparation for a variety of sample types. A chelating form of a solid suspended reagent is added to a pH-adjusted sample. The suspended reagent with any bound elements are trapped in a hollow fiber membrane filter while unbound matrix components are washed to waste. The reagent with bound analytes are then released in a small volume. The system works in concert with an autosampler for unattended operation. Application to a variety of geological and environmental samples will be described.

  3. Detection of Cytomegalovirus (CMV) DNA in EDTA Whole-Blood Samples: Evaluation of the Quantitative artus CMV LightCycler PCR Kit in Conjunction with Automated Sample Preparation▿

    PubMed Central

    Michelin, Birgit D. A.; Hadžisejdić, Ita; Bozic, Michael; Grahovac, Maja; Hess, Markus; Grahovac, Blaženka; Marth, Egon; Kessler, Harald H.

    2008-01-01

    Whole blood has been found to be a reliable matrix for the detection and quantitation of cytomegalovirus (CMV) DNA. In this study, the performance of the artus CMV LightCycler (LC) PCR kit in conjunction with automated sample preparation on a BioRobot EZ1 workstation was evaluated. The accuracy, linearity, analytical sensitivity, and inter- and intra-assay variations were determined. A total of 102 clinical EDTA whole-blood samples were investigated, and results were compared with those obtained with the in vitro diagnostics (IVD)/Conformité Européene (CE)-labeled CMV HHV6,7,8 R-gene quantification kit. When the accuracy of the new kit was tested, seven of eight results were found to be within ±0.5 log10 unit of the expected panel results. Determination of linearity resulted in a quasilinear curve over more than 5 log units. The lower limit of detection of the assay was determined to be 139 copies/ml in EDTA whole blood. The interassay variation ranged from 15 to 58%, and the intra-assay variation ranged from 7 to 35%. When clinical samples were tested and the results were compared with those of the routinely used IVD/CE-labeled assay, 53 samples tested positive and 13 samples tested negative by both of the assays. One sample was found to be positive with the artus CMV LC PCR kit only, and 35 samples tested positive with the routinely used assay only. The majority of discrepant results were found with low-titer samples. In conclusion, use of the artus CMV LC PCR kit in conjunction with automated sample preparation on the BioRobot EZ1 workstation may be suitable for the detection and quantitation of CMV DNA in EDTA whole blood in the routine low-throughput laboratory; however, low-positive results may be missed by this assay. PMID:18272703

  4. Automation impact study of Army training management 2: Extension of sampling and collection of installation resource data

    SciTech Connect

    Sanquist, T.F.; McCallum, M.C.; Hunt, P.S.; Slavich, A.L.; Underwood, J.A.; Toquam, J.L.; Seaver, D.A.

    1989-05-01

    This automation impact study of Army training management (TM) was performed for the Army Development and Employment Agency (ADEA) and the Combined Arms Training Activity (CATA) by the Battelle Human Affairs Research Centers and the Pacific Northwest Laboratory. The primary objective of the study was to provide the Army with information concerning the potential costs and savings associated with automating the TM process. This study expands the sample of units surveyed in Phase I of the automation impact effort (Sanquist et al., 1988), and presents data concerning installation resource management in relation to TM. The structured interview employed in Phase I was adapted to a self-administered survey. The data collected were compatible with that of Phase I, and both were combined for analysis. Three US sites, one reserve division, one National Guard division, and one unit in the active component outside the continental US (OCONUS) (referred to in this report as forward deployed) were surveyed. The total sample size was 459, of which 337 respondents contributed the most detailed data. 20 figs., 62 tabs.

  5. Alpine Groundwater - Pristine Aquifers Under Threat?

    NASA Astrophysics Data System (ADS)

    Schneider, P.; Lange, A.

    2014-12-01

    Glacier and permafrost retreat are prominent climate change indicators. However, the characteristics of climate and hydrology in mountain areas remain poorly understood relative to lowland areas. Specifically, not much is known about alpine groundwater, its recharge and water quality variations, as these remote reservoirs are rarely monitored. As global temperatures rise, glaciers and permafrost will continue to retreat forming new sediment deposits and changing infiltration conditions in high alpine terrain. Climate change impacts the hydro-chemical composition of alpine waters, accelerates weathering processes, and potentially triggers mobilization of pollutants. Accordingly, we monitored groundwater quantity and quality parameters of an alpine porous aquifer near the Tiefenbach glacier in the Gotthard Massif in Switzerland. The goal of this research was to assess quality and seasonal storage dynamics of groundwater above the timberline (2000 m). To translate hydrological science into an ecosystem service context, we focused on four attributes: Water quantity: observations of groundwater level fluctuations combined with analysis of contributing water sources based on stable isotope analysis to give a quantitative understanding of origin and amount of water, Water quality: groundwater level, groundwater temperature and electrical conductivity were used as proxies for sampling of hydro-chemical parameters with automated water samplers during primary groundwater recharge periods (snowmelt and rainfall events), Location: Alpine terrain above the timberline, especially recharge into/out of an alpine porous aquifer at a pro-glacial floodplain and Date of annual melt (albedo effect) and timing of flow (snow- and icemelt from May to September) and groundwater recharge during the growing season. The study found that the summer groundwater temperatures depend on the date of annual melt and are more sensitive to climate forcing than lowland groundwater temperatures

  6. Radon monitoring in groundwater samples from some areas of northern Rajasthan, India, using a RAD7 detector.

    PubMed

    Rani, Asha; Mehra, Rohit; Duggal, Vikas

    2013-01-01

    Radon monitoring has been increasingly conducted worldwide because of the hazardous effects of radon on the health of human beings. In the present research, groundwater samples were taken from hand pumps at different areas of the districts of SriGanganagar, Hanumangarh, Sikar and Churu in northern Rajasthan. RAD7, an electronic radon detector (Durridge co., USA), was used to estimate the radon concentration in groundwater used for drinking. Radon concentration in the groundwater ranged from 0.5 ± 0.3 Bq l(-1) (Chimanpura) to 85.7±4.9 Bq l(-1)(Khandela) with an average value of 9.03±1.03 Bq l(-1). In 89 % of the samples, radon concentration is well below the allowed maximum contamination level (MCL) of radon concentration in water of 11 Bq l(-1), proposed by US Environmental Protection Agency (USEPA). Only in 11 % of the samples, the recorded values were found to be higher than MCL proposed by USEPA and only in 5 % of the samples, the recorded values were found to be higher than the values between 4 and 40 Bq l(-1) suggested for radon concentration in water for human consumption by the United Nations Scientific Committee on the effect of Atomic Radiation (UNSCEAR). The annual effective dose in stomach and lungs per person was also evaluated in this research. The estimated total annual effective dose of adults ranged from 1.34 to 229.68 µSv y(-1). The total annual effective dose from three locations of the studied area was found to be greater than the safe limit (0.1 mSv y(-1)) recommended by World Health Organization and EU Council. PMID:22826356

  7. Automated sample-changing robot for solution scattering experiments at the EMBL Hamburg SAXS station X33.

    PubMed

    Round, A R; Franke, D; Moritz, S; Huchler, R; Fritsche, M; Malthan, D; Klaering, R; Svergun, D I; Roessle, M

    2008-10-01

    There is a rapidly increasing interest in the use of synchrotron small-angle X-ray scattering (SAXS) for large-scale studies of biological macromolecules in solution, and this requires an adequate means of automating the experiment. A prototype has been developed of an automated sample changer for solution SAXS, where the solutions are kept in thermostatically controlled well plates allowing for operation with up to 192 samples. The measuring protocol involves controlled loading of protein solutions and matching buffers, followed by cleaning and drying of the cell between measurements. The system was installed and tested at the X33 beamline of the EMBL, at the storage ring DORIS-III (DESY, Hamburg), where it was used by over 50 external groups during 2007. At X33, a throughput of approximately 12 samples per hour, with a failure rate of sample loading of less than 0.5%, was observed. The feedback from users indicates that the ease of use and reliability of the user operation at the beamline were greatly improved compared with the manual filling mode. The changer is controlled by a client-server-based network protocol, locally and remotely. During the testing phase, the changer was operated in an attended mode to assess its reliability and convenience. Full integration with the beamline control software, allowing for automated data collection of all samples loaded into the machine with remote control from the user, is presently being implemented. The approach reported is not limited to synchrotron-based SAXS but can also be used on laboratory and neutron sources. PMID:25484841

  8. Automated sample-changing robot for solution scattering experiments at the EMBL Hamburg SAXS station X33

    PubMed Central

    Round, A. R.; Franke, D.; Moritz, S.; Huchler, R.; Fritsche, M.; Malthan, D.; Klaering, R.; Svergun, D. I.; Roessle, M.

    2008-01-01

    There is a rapidly increasing interest in the use of synchrotron small-angle X-ray scattering (SAXS) for large-scale studies of biological macromolecules in solution, and this requires an adequate means of automating the experiment. A prototype has been developed of an automated sample changer for solution SAXS, where the solutions are kept in thermostatically controlled well plates allowing for operation with up to 192 samples. The measuring protocol involves controlled loading of protein solutions and matching buffers, followed by cleaning and drying of the cell between measurements. The system was installed and tested at the X33 beamline of the EMBL, at the storage ring DORIS-III (DESY, Hamburg), where it was used by over 50 external groups during 2007. At X33, a throughput of approximately 12 samples per hour, with a failure rate of sample loading of less than 0.5%, was observed. The feedback from users indicates that the ease of use and reliability of the user operation at the beamline were greatly improved compared with the manual filling mode. The changer is controlled by a client–server-based network protocol, locally and remotely. During the testing phase, the changer was operated in an attended mode to assess its reliability and convenience. Full integration with the beamline control software, allowing for automated data collection of all samples loaded into the machine with remote control from the user, is presently being implemented. The approach reported is not limited to synchrotron-based SAXS but can also be used on laboratory and neutron sources. PMID:25484841

  9. Groundwater quality sampling and analysis plan for environmental monitoring in Waste Area Grouping 6 at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Not Available

    1994-03-01

    This Sampling and Analysis Plan addresses groundwater quality sampling and analysis activities that will be conducted in support of the Environmental Monitoring Plan for Waste Area Grouping (WAG) 6. WAG 6 is a shallow-burial land disposal facility for low-level radioactive waste at the Oak Ridge National Laboratory, a research facility owned by the US Department of energy and managed by martin Marietta Energy Systems, Inc. (Energy Systems). Groundwater sampling will be conducted by Energy Systems at 45 wells within WAG 6. The samples will be analyzed for various organic, inorganic, and radiological parameters. The information derived from the groundwater quality monitoring, sampling, and analysis will aid in evaluating relative risk associated with contaminants migrating off-WAG, and also will fulfill Resource Conservation and Recovery Act (RCRA) interim permit monitoring requirements. The sampling steps described in this plan are consistent with the steps that have previously been followed by Energy Systems when conducting RCRA sampling.

  10. Groundwater Quality Sampling and Analysis Plan for Environmental Monitoring Waste Area Grouping 6 at Oak Ridge National Laboratory. Environmental Restoration Program

    SciTech Connect

    1995-09-01

    This Sampling and Analysis Plan addresses groundwater quality sampling and analysis activities that will be conducted in support of the Environmental Monitoring Plan for Waste Area Grouping (WAG) 6. WAG 6 is a shallow-burial land disposal facility for low-level radioactive waste at the Oak Ridge National Laboratory, a research facility owned by the US Department of Energy and managed by Martin Marietta Energy Systems, Inc. (Energy Systems). Groundwater sampling will be conducted by Energy Systems at 45 wells within WAG 6. The samples will be analyzed for various organic, inorganic, and radiological parameters. The information derived from the groundwater quality monitoring, sampling, and analysis will aid in evaluating relative risk associated with contaminants migrating off-WAG, and also will fulfill Resource Conservation and Recovery Act (RCRA) interim permit monitoring requirements. The sampling steps described in this plan are consistent with the steps that have previously been followed by Energy Systems when conducting RCRA sampling.

  11. Initial Report for the Aquifer Background Study: Summary of Uranium and Plutonium Data from INEEL Groundwater Samples

    SciTech Connect

    Robert C. Roback; Don L. Koeppen

    2003-06-01

    As part of the “Aquifer Background Study,” Los Alamos National Laboratory (LANL) under contract with the Idaho National Engineering and Environmental Laboratory (INEEL) has undertaken a study to determine uranium and plutonium abundances and isotopic composition in groundwater samples collected at the INEEL. To date, four samples have been analyzed for uranium and plutonium and an additional nine samples have been analyzed for uranium. It is expected that several more samples will be analyzed for this study. This report summarizes the results from this initial set of samples. Of the 13 samples analyzed for uranium, four samples have 238U/235U ratios that differ from the natural value of 137.88. These four samples and two additional samples also contain 236U at 3-sigma level above detection limits. The presence of 236U and the non-natural 238U/235U ratios unequivocally indicate the presence of anthropic uranium in four of the samples. A small component of anthropic uranium is also present in two additional samples with positive 236U detection but natural 238U/235U isotope ratios. Two of the samples with anthropic uranium, as well as two samples with no detectable anthropic uranium were analyzed for plutonium. No plutonium was detected in these four samples at detection limits of approximately 5E7 239Pu atoms for three of the samples and approximately 1E8 239Pu atoms for the forth sample. These detection limits correspond to (239+240)Pu activity ratios (assuming a 240Pu/239Pu atom ratio of 0.18) of 0.002 and 0.004 pCi/L respectively.

  12. Application of a new vertical profiling tool (ESASS) for sampling groundwater quality during hollow-stem auger drilling

    USGS Publications Warehouse

    Harte, Philip T.; Flanagan, Sarah M.

    2011-01-01

    A new tool called ESASS (Enhanced Screen Auger Sampling System) was developed by the U.S. Geological Survey. The use of ESASS, because of its unique U.S. patent design (U.S. patent no. 7,631,705 B1), allows for the collection of representative, depth-specific groundwater samples (vertical profiling) in a quick and efficient manner using a 0.305-m long screen auger during hollow-stem auger drilling. With ESASS, the water column in the flights above the screen auger is separated from the water in the screen auger by a specially designed removable plug and collar. The tool fits inside an auger of standard inner diameter (82.55 mm). The novel design of the system constituted by the plug, collar, and A-rod allows the plug to be retrieved using conventional drilling A-rods. After retrieval, standard-diameter (50.8 mm) observation wells can be installed within the hollow-stem augers. Testing of ESASS was conducted at one waste-disposal site with tetrachloroethylene (PCE) contamination and at two reference sites with no known waste-disposal history. All three sites have similar geology and are underlain by glacial, stratified-drift deposits. For the applications tested, ESASS proved to be a useful tool in vertical profiling of groundwater quality. At the waste site, PCE concentrations measured with ESASS profiling at several depths were comparable (relative percent difference <25%) to PCE concentrations sampled from wells. Vertical profiling with ESASS at the reference sites illustrated the vertical resolution achievable in the profile system; shallow groundwater quality varied by a factor of five in concentration of some constituents (nitrate and nitrite) over short (0.61 m) distances.

  13. Application of a new vertical profiling tool (ESASS) for sampling groundwater quality during hollow-stem auger drilling

    USGS Publications Warehouse

    Harte, P.T.; Flanagan, S.M.

    2011-01-01

    A new tool called ESASS (Enhanced Screen Auger Sampling System) was developed by the U.S. Geological Survey. The use of ESASS, because of its unique U.S. patent design (U.S. patent no. 7,631,705 B1), allows for the collection of representative, depth-specific groundwater samples (vertical profiling) in a quick and efficient manner using a 0.305-m long screen auger during hollow-stem auger drilling. With ESASS, the water column in the flights above the screen auger is separated from the water in the screen auger by a specially designed removable plug and collar. The tool fits inside an auger of standard inner diameter (82.55 mm). The novel design of the system constituted by the plug, collar, and A-rod allows the plug to be retrieved using conventional drilling A-rods. After retrieval, standard-diameter (50.8 mm) observation wells can be installed within the hollow-stem augers. Testing of ESASS was conducted at one waste-disposal site with tetrachloroethylene (PCE) contamination and at two reference sites with no known waste-disposal history. All three sites have similar geology and are underlain by glacial, stratified-drift deposits. For the applications tested, ESASS proved to be a useful tool in vertical profiling of groundwater quality. At the waste site, PCE concentrations measured with ESASS profiling at several depths were comparable (relative percent difference <25%) to PCE concentrations sampled from wells. Vertical profiling with ESASS at the reference sites illustrated the vertical resolution achievable in the profile system; shallow groundwater quality varied by a factor of five in concentration of some constituents (nitrate and nitrite) over short (0.61 m) distances. Ground Water Monitoring & Remediation ?? 2011, National Ground Water Association. No claim to original US government works.

  14. Automated Detection of Toxigenic Clostridium difficile in Clinical Samples: Isothermal tcdB Amplification Coupled to Array-Based Detection

    PubMed Central

    Pasko, Chris; Groves, Benjamin; Ager, Edward; Corpuz, Maylene; Frech, Georges; Munns, Denton; Smith, Wendy; Warcup, Ashley; Denys, Gerald; Ledeboer, Nathan A.; Lindsey, Wes; Owen, Charles; Rea, Larry; Jenison, Robert

    2012-01-01

    Clostridium difficile can carry a genetically variable pathogenicity locus (PaLoc), which encodes clostridial toxins A and B. In hospitals and in the community at large, this organism is increasingly identified as a pathogen. To develop a diagnostic test that combines the strengths of immunoassays (cost) and DNA amplification assays (sensitivity/specificity), we targeted a genetically stable PaLoc region, amplifying tcdB sequences and detecting them by hybridization capture. The assay employs a hot-start isothermal method coupled to a multiplexed chip-based readout, creating a manual assay that detects toxigenic C. difficile with high sensitivity and specificity within 1 h. Assay automation on an electromechanical instrument produced an analytical sensitivity of 10 CFU (95% probability of detection) of C. difficile in fecal samples, along with discrimination against other enteric bacteria. To verify automated assay function, 130 patient samples were tested: 31/32 positive samples (97% sensitive; 95% confidence interval [CI], 82 to 99%) and 98/98 negative samples (100% specific; 95% CI, 95 to 100%) were scored correctly. Large-scale clinical studies are now planned to determine clinical sensitivity and specificity. PMID:22675134

  15. Task summary for cone penetrating testing sounding and soil and groundwater sampling Salmon Site, Lamar County, Mississippi

    SciTech Connect

    Not Available

    1994-10-01

    The Salmon Site (SS), located in Mississippi, was the site of two nuclear and two gas explosion testes conducted deep underground in the Tatum Salt Dome between 1964 and 1970. As a consequence radionuclides generated during the testing were released into the salt dome. During reentry drilling and other site activities, incidental liquid and solid wastes that contained radioactivity were generated, resulting in some soil, ground water and equipment contamination. US DOE is conducting a series of investigations as a part of the Remedial Investigation and Feasibility Study (under CERCLA) This report summarizes the cone penetrometer testing (CPT) and sampling program conducted in fall 1993, providing a description of the activities and a discussion of the results. The objectives of the CPT program were to determine subsurface conditions and stratification; determine the depth to the potentiometric surface; obtain soil samples from predetermined depths; obtain groundwater samples at predetermined depths.

  16. Status Report on the Microbial Characterization of Halite and Groundwater Samples from the WIPP

    SciTech Connect

    Swanson, Juliet S.; Reed, Donald T.; Ams, David A.; Norden, Diana; Simmons, Karen A.

    2012-07-10

    This report summarizes the progress made in the ongoing task of characterizing the microbial community structures within the WIPP repository and in surrounding groundwaters. Through cultivation and DNA-based identification, the potential activity of these organisms is being inferred, thus leading to a better understanding of their impact on WIPP performance. Members of the three biological domains - Bacteria, Archaea, and Eukarya (in this case, Fungi) - that are associated with WIPP halite have been identified. Thus far, their activity has been limited to aerobic respiration; anaerobic incubations are underway. WIPP halite constitutes the near-field microbial environment. We expect that microbial activity in this setting will proceed from aerobic respiration, through nitrate reduction to focus on sulfate reduction. This is also the current WIPP performance assessment (PA) position. Sulfate reduction can occur at extremely high ionic strengths, and sulfate is available in WIPP brines and in the anhydrite interbeds. The role of methanogenesis in the WIPP remains unclear, due to both energetic constraints imposed by a high-salt environment and substrate selectivity, and it is no longer considered in PA. Archaea identified in WIPP halite thus far fall exclusively within the family Halobacteriaceae. These include Halobacterium noricense, cultivated from both low- and high-salt media, and a Halorubrum-like species. The former has also been detected in other salt mines worldwide; the latter likely constitutes a new species. Little is known of its function, but it was prevalent in experiments investigating the biodegradation of organic complexing agents in WIPP brines. Bacterial signatures associated with WIPP halite include members of the phylum Proteobacteria - Halomonas, Pelomonas, Limnobacter, and Chromohalobacter - but only the latter has been isolated. Also detected and cultivated were Salinicoccus and Nesterenkonia spp. Fungi were also isolated from halite. Although

  17. Fully automated Liquid Extraction-Based Surface Sampling and Ionization Using a Chip-Based Robotic Nanoelectrospray Platform

    SciTech Connect

    Kertesz, Vilmos; Van Berkel, Gary J

    2010-01-01

    A fully automated liquid extraction-based surface sampling device utilizing an Advion NanoMate chip-based infusion nanoelectrospray ionization system is reported. Analyses were enabled for discrete spot sampling by using the Advanced User Interface of the current commercial control software. This software interface provided the parameter control necessary for the NanoMate robotic pipettor to both form and withdraw a liquid microjunction for sampling from a surface. The system was tested with three types of analytically important sample surface types, viz., spotted sample arrays on a MALDI plate, dried blood spots on paper, and whole-body thin tissue sections from drug dosed mice. The qualitative and quantitative data were consistent with previous studies employing other liquid extraction-based surface sampling techniques. The successful analyses performed here utilized the hardware and software elements already present in the NanoMate system developed to handle and analyze liquid samples. Implementation of an appropriate sample (surface) holder, a solvent reservoir, faster movement of the robotic arm, finer control over solvent flow rate when dispensing and retrieving the solution at the surface, and the ability to select any location on a surface to sample from would improve the analytical performance and utility of the platform.

  18. High-frequency, long-duration water sampling in acid mine drainage studies: a short review of current methods and recent advances in automated water samplers

    USGS Publications Warehouse

    Chapin, Thomas

    2015-01-01

    Hand-collected grab samples are the most common water sampling method but using grab sampling to monitor temporally variable aquatic processes such as diel metal cycling or episodic events is rarely feasible or cost-effective. Currently available automated samplers are a proven, widely used technology and typically collect up to 24 samples during a deployment. However, these automated samplers are not well suited for long-term sampling in remote areas or in freezing conditions. There is a critical need for low-cost, long-duration, high-frequency water sampling technology to improve our understanding of the geochemical response to temporally variable processes. This review article will examine recent developments in automated water sampler technology and utilize selected field data from acid mine drainage studies to illustrate the utility of high-frequency, long-duration water sampling.

  19. Groundwater Sampling and Soil Gas Data Analysis, Distler Brickyard Superfund Site, Hardin County, Kentucky -- June - August 2000

    SciTech Connect

    Martin, Jennifer Pauline; Peterson, Lance Nutting; Taylor, C. J.

    2000-11-01

    This report describes the results of groundwater and soil gas sampling conducted at the Distler Brickyard Site, Hardin County, Kentucky, June-August, 2000. The purpose of the sampling activities was to address remaining data gaps regarding the feasibility of monitored natural attenuation (MNA) for remediation of chloroethene/ane contamination. Specifically, data gaps fall into four categories: 1) effect of seasonal recharge on contaminant concentrations, 2) geochemical conditions in the Fine Grained Alluvium (FGA), 3) conditions along the flowpath between Wells GW-11 and MW-3, and 4) the extent of aerobic degradation in the Coarse Grained Alluvium (CGA). A data collection strategy composed of both groundwater sampling and passive soil vapor sampling devices (Gore-Sorbers?) was used. The Gore-Sorber? technology was used to collect data from the FGA, which because of its low hydraulic conductivity and variable saturation makes collection of groundwater samples problematic. Gore-Sorbers were deployed in 15 wells, most of them being in the FGA, and groundwater samples were collected in 17 wells, which were mostly in the CGA. Both sampling methods were utilized in a subset of wells (7) in order to determine the general comparability of results obtained from each method. Results indicate that water levels in both the FGA and CGA were higher in June-August 2000 than in October 1999, likely due to increased infiltration of precipitation through the FGA during the wetter months. Redox conditions in the FGA and downgradient CGA were iron-reducing, less reducing than in October-1999. In general, concentrations of chloroethenes/anes were higher in June-August 2000 than October 1999. Trichloroethene (TCE) was present at concentrations as high as 65 µg/L in the FGA and 19 µg/L in the CGA. This is substantially higher than the maximum concentration in October 1999 of 11 µg/L. The following conclusions were drawn from these data collection activities: 1) two potential

  20. A New Automated Sample Transfer System for Instrumental Neutron Activation Analysis

    PubMed Central

    Ismail, S. S.

    2010-01-01

    A fully automated and fast pneumatic transport system for short-time activation analysis was recently developed. It is suitable for small nuclear research reactors or laboratories that are using neutron generators and other neutron sources. It is equipped with a programmable logic controller, software package, and 12 devices to facilitate optimal analytical procedures. 550 ms were only necessary to transfer the irradiated capsule (diameter: 15 mm, length: 50 mm, weight: 4 gram) to the counting chamber at a distance of 20 meters using pressurized air (4 bars) as a transport gas. PMID:20369063

  1. Automated fluid analysis apparatus and techniques

    DOEpatents

    Szecsody, James E.

    2004-03-16

    An automated device that couples a pair of differently sized sample loops with a syringe pump and a source of degassed water. A fluid sample is mounted at an inlet port and delivered to the sample loops. A selected sample from the sample loops is diluted in the syringe pump with the degassed water and fed to a flow through detector for analysis. The sample inlet is also directly connected to the syringe pump to selectively perform analysis without dilution. The device is airtight and used to detect oxygen-sensitive species, such as dithionite in groundwater following a remedial injection to treat soil contamination.

  2. An automated procedure for the simultaneous determination of specific conductance and pH in natural water samples

    USGS Publications Warehouse

    Eradmann, D.E.; Taylor, H.E.

    1978-01-01

    An automated, continuous-flow system is utilized to determine specific conductance and pH simultaneously in natural waters. A direct electrometric procedure is used to determine values in the range pH 4-9. The specific conductance measurements are made with an electronically modified, commercially available conductivity meter interfaced to a separate module containing the readout control devices and printer. The system is designed to switch ranges automatically to accommodate optimum analysis of widely varying conductances ranging from a few ??mhos cm-1 to 15,000 ??mho cm-1. Thirty samples per hour can be analyzed. Comparison of manual and automated procedures for 40 samples showed that the average differences were 1.3% for specific conductance and 0.07 units for pH. The relative standard deviation for 25 replicate values for each of five samples was significantly less than 1% for the specific conductance determination; the standard deviation for the pH determination was ??? 0.06 pH units. ?? 1978.

  3. Sample registration software for process automation in the Neutron Activation Analysis (NAA) Facility in Malaysia nuclear agency

    NASA Astrophysics Data System (ADS)

    Rahman, Nur Aira Abd; Yussup, Nolida; Salim, Nazaratul Ashifa Bt. Abdullah; Ibrahim, Maslina Bt. Mohd; Mokhtar, Mukhlis B.; Soh@Shaari, Syirrazie Bin Che; Azman, Azraf B.; Ismail, Nadiah Binti

    2015-04-01

    Neutron Activation Analysis (NAA) had been established in Nuclear Malaysia since 1980s. Most of the procedures established were done manually including sample registration. The samples were recorded manually in a logbook and given ID number. Then all samples, standards, SRM and blank were recorded on the irradiation vial and several forms prior to irradiation. These manual procedures carried out by the NAA laboratory personnel were time consuming and not efficient. Sample registration software is developed as part of IAEA/CRP project on `Development of Process Automation in the Neutron Activation Analysis (NAA) Facility in Malaysia Nuclear Agency (RC17399)'. The objective of the project is to create a pc-based data entry software during sample preparation stage. This is an effective method to replace redundant manual data entries that needs to be completed by laboratory personnel. The software developed will automatically generate sample code for each sample in one batch, create printable registration forms for administration purpose, and store selected parameters that will be passed to sample analysis program. The software is developed by using National Instruments Labview 8.6.

  4. Sample registration software for process automation in the Neutron Activation Analysis (NAA) Facility in Malaysia nuclear agency

    SciTech Connect

    Rahman, Nur Aira Abd Yussup, Nolida; Ibrahim, Maslina Bt. Mohd; Mokhtar, Mukhlis B.; Soh Shaari, Syirrazie Bin Che; Azman, Azraf B.; Salim, Nazaratul Ashifa Bt. Abdullah; Ismail, Nadiah Binti

    2015-04-29

    Neutron Activation Analysis (NAA) had been established in Nuclear Malaysia since 1980s. Most of the procedures established were done manually including sample registration. The samples were recorded manually in a logbook and given ID number. Then all samples, standards, SRM and blank were recorded on the irradiation vial and several forms prior to irradiation. These manual procedures carried out by the NAA laboratory personnel were time consuming and not efficient. Sample registration software is developed as part of IAEA/CRP project on ‘Development of Process Automation in the Neutron Activation Analysis (NAA) Facility in Malaysia Nuclear Agency (RC17399)’. The objective of the project is to create a pc-based data entry software during sample preparation stage. This is an effective method to replace redundant manual data entries that needs to be completed by laboratory personnel. The software developed will automatically generate sample code for each sample in one batch, create printable registration forms for administration purpose, and store selected parameters that will be passed to sample analysis program. The software is developed by using National Instruments Labview 8.6.

  5. Development and characterization of a whole-cell bioluminescent sensor for bioavailable middle-chain alkanes in contaminated groundwater samples.

    PubMed Central

    Sticher, P; Jaspers, M C; Stemmler, K; Harms, H; Zehnder, A J; van der Meer, J R

    1997-01-01

    A microbial whole-cell biosensor was developed, and its potential to measure water-dissolved concentrations of middle-chain-length alkanes and some related compounds by bioluminescence was characterized. The biosensor strain Escherichia coli DH5 alpha(pGEc74, pJAMA7) carried the regulatory gene alkS from Pseudomonas oleovorans and a transcriptional fusion of PalkB from the same strain with the promoterless luciferase luxAB genes from Vibrio harveyi on two separately introduced plasmids. In standardized assays, the biosensor cells were readily inducible with octane, a typical inducer of the alk system. Light emission after induction periods of more than 15 min correlated well with octane concentration. In well-defined aqueous samples, there was a linear relationship between light output and octane concentrations between 24 and 100 nM. The biosensor responded to middle-chain-length alkanes but not to alicyclic or aromatic compounds. In order to test its applicability for analyzing environmentally relevant samples, the biosensor was used to detect the bioavailable concentration of alkanes in heating oil-contaminated groundwater samples. By the extrapolation of calibrated light output data to low octane concentrations with a hyperbolic function, a total inducer concentration of about 3 nM in octane equivalents was estimated. The whole-cell biosensor tended to underestimate the alkane concentration in the groundwater samples by about 25%, possibly because of the presence of unknown inhibitors. This was corrected for by spiking the samples with a known amount of an octane standard. Biosensor measurements of alkane concentrations were further verified by comparing them with the results of chemical analyses. PMID:9327569

  6. Non-destructive automated sampling of mycotoxins in bulk food and feed - A new tool for required harmonization.

    PubMed

    Spanjer, M; Stroka, J; Patel, S; Buechler, S; Pittet, A; Barel, S

    2001-06-01

    Mycotoxins contamination is highly non-uniformly distributed as is well recog-nized by the EC, by not only setting legal limits in a series of commodities, but also schedule a sampling plan that takes this heterogeneity into account. In practice however, it turns out that it is very difficult to carry out this sampling plan in a harmonised way. Applying the sampling plan to a container filled with pallets of bags (i.e. with nuts or coffee beans) varies from very laborious to almost impossible. The presented non-destructive automated method to sample bulk food could help to overcome these practical problems and to enforcing of EC directives. It is derived from a tested and approved technology for detection of illicit substances in security applications. It has capability to collect and iden-tify ultra trace contaminants, i.e. from a fingerprint of chemical substance in a bulk of goods, a cargo pallet load (~ 1000 kg) with boxes and commodities.The technology, patented for explosives detection, uses physical and chemistry processes for excitation and remote rapid enhanced release of contaminant residues, vapours and particulate, of the inner/outer surfaces of inspected bulk and collect them on selective probes. The process is automated, takes only 10 minutes, is non-destructive and the bulk itself remains unharmed. The system design is based on applicable international regulations for shipped cargo hand-ling and transportation by road, sea and air. After this process the pallet can be loaded on a truck, ship or plane. Analysis can be carried out before the cargo leaves the place of shipping. The potent application of this technology for myco-toxins detection, has been demonstrated by preliminary feasibility experiments. Aflatoxins were detected in pistachios and ochratoxin A in green coffee beans bulk. Both commodities were naturally contaminated, priory found and confirm-ed by common methods as used at routine inspections. Once the contaminants are extracted from a

  7. Collection, storage, and filtration of in vivo study samples using 96-well filter plates to facilitate automated sample preparation and LC/MS/MS analysis.

    PubMed

    Berna, M; Murphy, A T; Wilken, B; Ackermann, B

    2002-03-01

    The benefits of high-throughput bioanalysis within the pharmaceutical industry are well established. One of the most significant bottlenecks in bioanalysis is transferring in vivo-generated study samples from their collection tubes during sample preparation and extraction. In most cases, the plasma samples must be stored frozen prior to analysis, and the freeze/thaw (F/T) process introduces thrombin clots that are capable of plugging pipets and automated liquid-transfer systems. A new approach to dealing with this problem involves the use of Ansys Captiva 96-well 20-microm polypropylene filter plates to collect, store frozen, and filter plasma samples prior to bioanalysis. The samples are collected from the test subjects, and the corresponding plasma samples are placed directly into the wells of the filter plate. Two Duoseal (patent pending) covers are used to seal the top and bottom of the plate, and the plate is stored at down to -70 degrees C. Prior to sample analysis, the seals are removed and the plate is placed in a 96-well SPE manifold. As the plasma thaws, it passes (by gravity or mild vacuum) through the polypropylene filter into a 96-well collection plate. A multichannel pipet or automated liquid-transfer system is used to transfer sample aliquots without fear of plugging. A significant advantage of this approach is that, unlike other methods, issues related to incomplete pipetting are virtually eliminated. The entire process is rapid since thawing and filtering take place simultaneously, and if a second F/T cycle is required for reanalysis, it is not necessary to refilter the samples (additional clotting was not observed after three F/T cycles). This technique was tested using monkey, rat, and dog plasma and sodium heparin and EDTA anticoagulants. To assess the possibility of nonspecific binding to the polypropylene filter, a variety of drug candidates from diverse drug classes were studied. Validation data generated for two Lilly compounds from distinct

  8. 1,4-Dioxane biodegradation at low temperatures in Arctic groundwater samples.

    PubMed

    Li, Mengyan; Fiorenza, Stephanie; Chatham, James R; Mahendra, Shaily; Alvarez, Pedro J J

    2010-05-01

    1,4-Dioxane biodegradation was investigated in microcosms prepared with groundwater and soil from an impacted site in Alaska. In addition to natural attenuation conditions (i.e., no amendments), the following treatments were tested: (a) biostimulation by addition of 1-butanol (a readily available auxiliary substrate) and inorganic nutrients; and (b) bioaugmentation with Pseudonocardia dioxanivorans CB1190, a well-characterized dioxane-degrading bacterium, or with Pseudonocardia antarctica DVS 5a1, a bacterium isolated from Antarctica. Biostimulation enhanced the degradation of 50 mg L(-1) dioxane by indigenous microorganisms (about 0.01 mg dioxane d(-1) mg protein(-1)) at both 4 and 14 degrees C, with a simultaneous increase in biomass. A more pronounced enhancement was observed through bioaugmentation. Microcosms with 50 mg L(-1) initial dioxane (representing source-zone contamination) and augmented with CB1190 degraded dioxane fastest (0.16 +/- 0.04 mg dioxane d(-1) mg protein(-1)) at 14 degrees C, and the degradation rate decreased dramatically at 4 degrees C (0.021 +/- 0.007 mg dioxane d(-1) mg protein(-1)). In contrast, microcosms with DVS 5a1 degraded dioxane at similar rates at 4 degrees C and 14 degrees C (0.018 +/- 0.004 and 0.015 +/- 0.006 mg dioxane d(-1) mg protein(-1), respectively). DVS 5a1 outperformed CB1190 when the initial dioxane concentration was low (500 microg L(-1), which is representative of the leading edge of plumes). This indicates differences in competitive advantages of these two strains. Natural attenuation microcosms also showed significant degradation over 6 months when the initial dioxane concentration was 500 microg L(-1). This is the first study to report the potential for dioxane bioremediation and natural attenuation of contaminated groundwater in sensitive cold-weather ecosystems such as the Arctic. PMID:20199795

  9. Automated method for simultaneous lead and strontium isotopic analysis applied to rainwater samples and airborne particulate filters (PM10).

    PubMed

    Beltrán, Blanca; Avivar, Jessica; Mola, Montserrat; Ferrer, Laura; Cerdà, Víctor; Leal, Luz O

    2013-09-01

    A new automated, sensitive, and fast system for the simultaneous online isolation and preconcentration of lead and strontium by sorption on a microcolumn packed with Sr-resin using an inductively coupled plasma mass spectrometry (ICP-MS) detector was developed, hyphenating lab-on-valve (LOV) and multisyringe flow injection analysis (MSFIA). Pb and Sr are directly retained on the sorbent column and eluted with a solution of 0.05 mol L(-1) ammonium oxalate. The detection limits achieved were 0.04 ng for lead and 0.03 ng for strontium. Mass calibration curves were used since the proposed system allows the use of different sample volumes for preconcentration. Mass linear working ranges were between 0.13 and 50 ng and 0.1 and 50 ng for lead and strontium, respectively. The repeatability of the method, expressed as RSD, was 2.1% and 2.7% for Pb and Sr, respectively. Environmental samples such as rainwater and airborne particulate (PM10) filters as well as a certified reference material SLRS-4 (river water) were satisfactorily analyzed obtaining recoveries between 90 and 110% for both elements. The main features of the LOV-MSFIA-ICP-MS system proposed are the capability to renew solid phase extraction at will in a fully automated way, the remarkable stability of the column which can be reused up to 160 times, and the potential to perform isotopic analysis. PMID:23883353

  10. Microbiological Comparison of Core and Groundwater Samples Collected from a Fractured Basalt Aquifier with that of Dialysis Chamber Incubated in Situ

    SciTech Connect

    Lehman, R. Michael; O'Connell, Sean P.; Banta, Amy; Fredrickson, Jim K.; Reysenbach, Anna-Louis; Kieft, Thomas L.; Colwell, Frederick S.

    2004-04-01

    Microorganisms associated with fractured basalt core were compared to those suspended in groundwater pumped from the same well in the eastern Snake River Plain Aquifer (Idaho, USA). Two wells influenced to different degrees by a mixed-waste plume in the fractured basalt aquifer were examined. In one well, an array of dialysis cells filled with either deionized water or crushed basalt was equilibrated to compare the microorganisms collected in this fashion with those from core and groundwater samples collected in a traditional manner from the same well. Analyses were performed to characterize these samples and to provide a basis for comparison. These included total cell counts by microscopy; total biomass by phospholipid fatty acid analysis; enumerations of viable aerobic heterotrophs, groups of putative aerobic co-metabolic TCE-degraders and aerobic H2-oxidizing bacteria; mineralization of 14C- labeled acetate; and enrichments for dissimilatory iron-reducing bacteria. The 16S rDNA sequences associated with DNA directly extracted from the samples were determined in selected samples following either clonal analyses or separation of PCR products by denaturing gradient gel electrophoresis. The ground water well most influenced by the waste plume had higher populations of organisms in both the groundwater and core samples. In both wells, significant differences were found between bacteria associated with the basalt core and those suspended in the groundwater. Microbial parameters measured in core samples showed high variation throughout the depth profile. Higher populations were found in the basalt- and water-filled dialysis cells incubated in the open well compared with core and groundwater samples, respectively. For a given parameter, the variation among dialysis cells incubated at different depths was much less than that observed in the core samples. Given knowledge of cell physiological changes associated with attachment and potential differences between attached

  11. April 2012 Groundwater and Surface Water Sampling at the Salmon, Mississippi, Site (Data Validation Package)

    SciTech Connect

    2012-10-12

    Sampling and analysis were conducted on April 16-19, 2012, as specified in the Sampling and Analysis Plan for U.S. Department of Energy Office Of Legacy Management Sites (LMS/PLN/S04351, continually updated). Duplicate samples were collected from locations SA1-1-H, HMH-5R, SA3-4-H, SA1-2-H, Pond W of GZ, and SA5-4-4. One trip blank was collected during this sampling event.

  12. GROUND WATER ISSUE: LOW-FLOW (MINIMAL DRAWDOWN) GROUND-WATER SAMPLING PROCEDURES

    EPA Science Inventory

    This paper is intended to provide background information on the development of low-flow sampling procedures and its application under a variety of hydrogeologic settings. The sampling methodology described in this paper assumes that the monitoring goal is to sample monitoring wel...

  13. Design and Practices for Use of Automated Drilling and Sample Handling in MARTE While Minimizing Terrestrial and Cross Contamination

    NASA Astrophysics Data System (ADS)

    Miller, David P.; Bonaccorsi, Rosalba; Davis, Kiel

    2008-10-01

    Mars Astrobiology Research and Technology Experiment (MARTE) investigators used an automated drill and sample processing hardware to detect and categorize life-forms found in subsurface rock at Río Tinto, Spain. For the science to be successful, it was necessary for the biomass from other sources -- whether from previously processed samples (cross contamination) or the terrestrial environment (forward contamination) -- to be insignificant. The hardware and practices used in MARTE were designed around this problem. Here, we describe some of the design issues that were faced and classify them into problems that are unique to terrestrial tests versus problems that would also exist for a system that was flown to Mars. Assessment of the biomass at various stages in the sample handling process revealed mixed results; the instrument design seemed to minimize cross contamination, but contamination from the surrounding environment sometimes made its way onto the surface of samples. Techniques used during the MARTE Río Tinto project, such as facing the sample, appear to remove this environmental contamination without introducing significant cross contamination from previous samples.

  14. Design and practices for use of automated drilling and sample handling in MARTE while minimizing terrestrial and cross contamination.

    PubMed

    Miller, David P; Bonaccorsi, Rosalba; Davis, Kiel

    2008-10-01

    Mars Astrobiology Research and Technology Experiment (MARTE) investigators used an automated drill and sample processing hardware to detect and categorize life-forms found in subsurface rock at Río Tinto, Spain. For the science to be successful, it was necessary for the biomass from other sources--whether from previously processed samples (cross contamination) or the terrestrial environment (forward contamination)-to be insignificant. The hardware and practices used in MARTE were designed around this problem. Here, we describe some of the design issues that were faced and classify them into problems that are unique to terrestrial tests versus problems that would also exist for a system that was flown to Mars. Assessment of the biomass at various stages in the sample handling process revealed mixed results; the instrument design seemed to minimize cross contamination, but contamination from the surrounding environment sometimes made its way onto the surface of samples. Techniques used during the MARTE Río Tinto project, such as facing the sample, appear to remove this environmental contamination without introducing significant cross contamination from previous samples. PMID:19105753

  15. Sequential automated fusion/extraction chromatography methodology for the dissolution of uranium in environmental samples for mass spectrometric determination.

    PubMed

    Milliard, Alex; Durand-Jézéquel, Myriam; Larivière, Dominic

    2011-01-17

    An improved methodology has been developed, based on dissolution by automated fusion followed by extraction chromatography for the detection and quantification of uranium in environmental matrices by mass spectrometry. A rapid fusion protocol (<8 min) was investigated for the complete dissolution of various samples. It could be preceded, if required, by an effective ashing procedure using the M4 fluxer and a newly designed platinum lid. Complete dissolution of the sample was observed and measured using standard reference materials (SRMs) and experimental data show no evidence of cross-contamination of crucibles when LiBO(2)/LiBr melts were used. The use of a M4 fusion unit also improved repeatability in sample preparation over muffle furnace fusion. Instrumental issues originating from the presence of high salt concentrations in the digestate after lithium metaborate fusion was also mitigated using an extraction chromatography (EXC) protocol aimed at removing lithium and interfering matrix constituants prior to the elution of uranium. The sequential methodology, which can be performed simultaneously on three samples, requires less than 20 min per sample for fusion and separation. It was successfully coupled to inductively coupled plasma mass spectrometry (ICP-MS) achieving detection limits below 100 pg kg(-1) for 5-300 mg of sample. PMID:21167982

  16. Summary of chemical data from onsite and laboratory analyses of groundwater samples from the surficial aquifer, Las Vegas, Nevada, April and August 1993 and September 1994

    USGS Publications Warehouse

    Reddy, Michael M.; Gunther, Charmaine D.

    2012-01-01

    Samples were collected from groundwater wells in and about the city of Las Vegas, Nevada, and were analyzed for selected major, minor and trace constituents. Analyses of blank and reference samples are summarized as mean and standard deviation values for all positive results.

  17. Solid recovered fuels in the cement industry--semi-automated sample preparation unit as a means for facilitated practical application.

    PubMed

    Aldrian, Alexia; Sarc, Renato; Pomberger, Roland; Lorber, Karl E; Sipple, Ernst-Michael

    2016-03-01

    One of the challenges for the cement industry is the quality assurance of alternative fuel (e.g., solid recovered fuel, SRF) in co-incineration plants--especially for inhomogeneous alternative fuels with large particle sizes (d95⩾100 mm), which will gain even more importance in the substitution of conventional fuels due to low production costs. Existing standards for sampling and sample preparation do not cover the challenges resulting from these kinds of materials. A possible approach to ensure quality monitoring is shown in the present contribution. For this, a specially manufactured, automated comminution and sample divider device was installed at a cement plant in Rohožnik. In order to prove its practical suitability with methods according to current standards, the sampling and sample preparation process were validated for alternative fuel with a grain size >30 mm (i.e., d95=approximately 100 mm), so-called 'Hotdisc SRF'. Therefore, series of samples were taken and analysed. A comparison of the analysis results with the yearly average values obtained through a reference investigation route showed good accordance. Further investigations during the validation process also showed that segregation or enrichment of material throughout the comminution plant does not occur. The results also demonstrate that compliance with legal standards regarding the minimum sample amount is not sufficient for inhomogeneous and coarse particle size alternative fuels. Instead, higher sample amounts after the first particle size reduction step are strongly recommended in order to gain a representative laboratory sample. PMID:26759433

  18. Multi-element compound specific stable isotope analysis of volatile organic compounds at trace levels in groundwater samples

    NASA Astrophysics Data System (ADS)

    Herrero-Martín, Sara; Nijenhuis, Ivonne; Schmidt, Marie; Wolfram, Diana; Richnow, Hans. H.; Gehre, Matthias

    2013-04-01

    Groundwater pollution remains one of the major environmental and health concerns. A thorough understanding of sources, sinks and transformation processes of groundwater contaminants is needed to improve risk management evaluation, and to design efficient remediation and water treatment strategies. Isotopic tools provide unique information for an in-depth understanding of the fate of organic chemicals in the environment. During the last decades compound specific isotope analysis (CSIA) of complex mixtures, using gas chromatography-isotope ratio mass spectrometry (GC-IRMS), has gained popularity for the characterization and risk assessment of hazardous waste sites and for isotope forensics of organic contaminants. Multi-element isotope fingerprinting of organic substances provides a more robust framework for interpretation than the isotope analysis of only one element. One major challenge for application of CSIA is the analysis of trace levels of organic compounds in environmental matrices. It is necessary to inject 1 nmol carbon or 8 nmol hydrogen on column, to obtain an accurate and precise measurement of the isotope ratios, which is between two and three orders of magnitude larger than the amount of compound needed for conventional analysis of compound concentrations. Therefore, efficient extraction and pre-concentration techniques have to be integrated with GC-IRMS. Further research is urgently needed in this field, to evaluate the potential of novel and environmental-friendly sample pre-treatment techniques for CSIA to lower the detection limits and extending environmental applications. In this study, the novel coupling of a headspace autosampler (HS) with a programmed temperature vaporizer (PTV), allowing large volume injection of headspace samples, is proposed to improve the sensitivity of CSIA. This automatic, fast and solvent free strategy provides a significant increase on the sensitivity of GC-based methods maintaining the simple headspace instrumentation

  19. March 2010 Groundwater Sampling at the Project Shoal Site, Nevada (Data Validation Package)

    SciTech Connect

    2011-03-01

    The U.S. Department of Energy Office of Legacy Management conducted annual sampling at the Project Shoal Area (Shoal) in March 2010. Wells HC-4, HC-5, HC-7, HC-8, MV-1, MV-2 and MV-3 were sampled March 10-12, 2010, as specified in the Sampling and Analysis Plan for U.S. Department of Energy Office of Legacy Management Sites (LMS/PLN/S04351, continually updated). Wells HC-1, HC-2, HC-3, and HC-6 were sampled March 24, 2010, by Desert Research Institute personnel.

  20. Automation of ⁹⁹Tc extraction by LOV prior ICP-MS detection: application to environmental samples.

    PubMed

    Rodríguez, Rogelio; Leal, Luz; Miranda, Silvia; Ferrer, Laura; Avivar, Jessica; García, Ariel; Cerdà, Víctor

    2015-02-01

    A new, fast, automated and inexpensive sample pre-treatment method for (99)Tc determination by inductively coupled plasma-mass spectrometry (ICP-MS) detection is presented. The miniaturized approach is based on a lab-on-valve (LOV) system, allowing automatic separation and preconcentration of (99)Tc. Selectivity is provided by the solid phase extraction system used (TEVA resin) which retains selectively pertechnetate ion in diluted nitric acid solution. The proposed system has some advantages such as minimization of sample handling, reduction of reagents volume, improvement of intermediate precision and sample throughput, offering a significant decrease of both time and cost per analysis in comparison to other flow techniques and batch methods. The proposed LOV system has been successfully applied to different samples of environmental interest (water and soil) with satisfactory recoveries, between 94% and 98%. The detection limit (LOD) of the developed method is 0.005 ng. The high durability of the resin and its low amount (32 mg), its good intermediate precision (RSD 3.8%) and repeatability (RSD 2%) and its high extraction frequency (up to 5 h(-1)) makes this method an inexpensive, high precision and fast tool for monitoring (99)Tc in environmental samples. PMID:25435232

  1. Evaluation of groundwater quality and assessment of scaling potential and corrosiveness of water samples in Kadkan aquifer, Khorasan-e-Razavi Province, Iran.

    PubMed

    Esmaeili-Vardanjani, Mostafa; Rasa, Iraj; Amiri, Vahab; Yazdi, Mohammad; Pazand, Kaveh

    2015-02-01

    The chemical analysis of 129 groundwater samples in the Kadkan area, Khorasan-e-Razavi Province, NE of Iran was evaluated to determine the hydrochemical processes, assessment of groundwater quality for irrigation purposes, corrosiveness, and scaling potential of the groundwater. Accordingly, the suitability of groundwater for irrigation was evaluated based on the sodium adsorption ratio, residual sodium carbonate, sodium percent, salinity hazard, and US Salinity Laboratory hazard diagram. Based on the electrical conductivity and sodium adsorption ratio, the dominant classes are C3-S1, C3-S2, C2-S1, and C4-S2. According to the Wilcox plot, about 50 % of the samples fall in the "Excellent to Good" and "Good to Permissible" classes. Besides, the Langelier saturation index, Ryznar stability index (RSI), Larson-Skold index, and Puckorius scaling index were evaluated for assessing the corrosiveness and scaling potential of the groundwater. Corrosiveness and scaling indices stated that the majority of samples are classified into "Aggressive" and "Very Aggressive" category. In addition, chloride and sulfate interfere in 90 % of the samples. Assessment of hydrochemical characteristics indicates Na-Mg-Cl as the predominant hydrochemical type. Spatial distribution of hydrochemical parameters indicates that hydrochemical processes are influenced by geology and hydrogeology of Kadkan aquifer. The Gibbs plots gave an indication that groundwater chemistry in this area may have acquired the chemistry mainly from evaporation and mineral precipitation. Grouping the samples based on Q-mode hierarchical cluster analysis helped to more separation of similar samples. The R-mode HCA grouped analyzed parameters into two groups based on similarity of hydrochemical characteristics. As a result, the samples collected in northern and southern parts of the study area show the best quality (i.e., lowest salinity) for some purposes such as irrigation and drinking. PMID:25638056

  2. Low-pressure, automated, sample packing unit for diffuse reflectance infrared spectrometry

    NASA Astrophysics Data System (ADS)

    Christy, Alfred A.; Tvedt, Jan Erik; Karstang, Terje V.; Velapoldi, Rance A.

    1988-03-01

    An automatic, low-pressure packing unit has been designed with control of packing time and pressure to prepare powder samples for diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS). This unit also provides a polished packing surface that ensures constant measurement height of the sample in the spectrometer. Use of this unit coupled with sample rotation during measurement and control of particle size and size distribution, provides excellent precision in obtaining DRIFTS spectra. For example, repackings by a single person or by several untrained people gave coefficients of variation from 0.8% to 2.3% for each digital spectral value for a coal sample and from 1.3% to 3.7% for thymol blue, a sharp spectral featured organic, rather than the 15%-30% normally found for repackings of the same sample. Thus representative DRIFTS spectra can be obtained quickly and efficiently from a powder sample with a single spectrum using this low-pressure, mechanical packing device, control of particle parameters, and sample rotation as opposed to previous efforts requiring the repacking of several samples and averaging of the spectra.

  3. Rapid and automated sample preparation for nucleic acid extraction on a microfluidic CD (compact disk)

    NASA Astrophysics Data System (ADS)

    Kim, Jitae; Kido, Horacio; Zoval, Jim V.; Gagné, Dominic; Peytavi, Régis; Picard, François J.; Bastien, Martine; Boissinot, Maurice; Bergeron, Michel G.; Madou, Marc J.

    2006-01-01

    Rapid and automated preparation of PCR (polymerase chain reaction)-ready genomic DNA was demonstrated on a multiplexed CD (compact disk) platform by using hard-to-lyse bacterial spores. Cell disruption is carried out while beadcell suspensions are pushed back and forth in center-tapered lysing chambers by angular oscillation of the disk - keystone effect. During this lysis period, the cell suspensions are securely held within the lysing chambers by heatactivated wax valves. Upon application of a remote heat to the disk in motion, the wax valves release lysate solutions into centrifuge chambers where cell debris are separated by an elevated rotation of the disk. Only debris-free DNA extract is then transferred to collection chambers by capillary-assisted siphon and collected for heating that inactivates PCR inhibitors. Lysing capacity was evaluated using a real-time PCR assay to monitor the efficiency of Bacillus globigii spore lysis. PCR analysis showed that 5 minutes' CD lysis run gave spore lysis efficiency similar to that obtained with a popular commercial DNA extraction kit (i.e., IDI-lysis kit from GeneOhm Sciences Inc.) which is highly efficient for microbial cell and spore lysis. This work will contribute to the development of an integrated CD-based assay for rapid diagnosis of infectious diseases.

  4. Automated Sample Preparation Platform for Mass Spectrometry-Based Plasma Proteomics and Biomarker Discovery

    PubMed Central

    Guryča, Vilém; Roeder, Daniel; Piraino, Paolo; Lamerz, Jens; Ducret, Axel; Langen, Hanno; Cutler, Paul

    2014-01-01

    The identification of novel biomarkers from human plasma remains a critical need in order to develop and monitor drug therapies for nearly all disease areas. The discovery of novel plasma biomarkers is, however, significantly hampered by the complexity and dynamic range of proteins within plasma, as well as the inherent variability in composition from patient to patient. In addition, it is widely accepted that most soluble plasma biomarkers for diseases such as cancer will be represented by tissue leakage products, circulating in plasma at low levels. It is therefore necessary to find approaches with the prerequisite level of sensitivity in such a complex biological matrix. Strategies for fractionating the plasma proteome have been suggested, but improvements in sensitivity are often negated by the resultant process variability. Here we describe an approach using multidimensional chromatography and on-line protein derivatization, which allows for higher sensitivity, whilst minimizing the process variability. In order to evaluate this automated process fully, we demonstrate three levels of processing and compare sensitivity, throughput and reproducibility. We demonstrate that high sensitivity analysis of the human plasma proteome is possible down to the low ng/mL or even high pg/mL level with a high degree of technical reproducibility. PMID:24833342

  5. Automated radioanalytical system incorporating microwave-assisted sample preparation, chemical separation, and online radiometric detection for the monitoring of total 99Tc in nuclear waste processing streams.

    PubMed

    Egorov, Oleg B; O'Hara, Matthew J; Grate, Jay W

    2012-04-01

    An automated fluidic instrument is described that rapidly determines the total (99)Tc content of aged nuclear waste samples, where the matrix is chemically and radiologically complex and the existing speciation of the (99)Tc is variable. The monitor links microwave-assisted sample preparation with an automated anion exchange column separation and detection using a flow-through solid scintillator detector. The sample preparation steps acidify the sample, decompose organics, and convert all Tc species to the pertechnetate anion. The column-based anion exchange procedure separates the pertechnetate from the complex sample matrix, so that radiometric detection can provide accurate measurement of (99)Tc. We developed a preprogrammed spike addition procedure to automatically determine matrix-matched calibration. The overall measurement efficiency that is determined simultaneously provides a self-diagnostic parameter for the radiochemical separation and overall instrument function. Continuous, automated operation was demonstrated over the course of 54 h, which resulted in the analysis of 215 samples plus 54 hly spike-addition samples, with consistent overall measurement efficiency for the operation of the monitor. A sample can be processed and measured automatically in just 12.5 min with a detection limit of 23.5 Bq/mL of (99)Tc in low activity waste (0.495 mL sample volume), with better than 10% RSD precision at concentrations above the quantification limit. This rapid automated analysis method was developed to support nuclear waste processing operations planned for the Hanford nuclear site. PMID:22440010

  6. Automated Radioanalytical System Incorporating Microwave-Assisted Sample Preparation, Chemical Separation, and Online Radiometric Detection for the Monitoring of Total 99Tc in Nuclear Waste Processing Streams

    SciTech Connect

    Egorov, Oleg; O'Hara, Matthew J.; Grate, Jay W.

    2012-04-03

    An automated fluidic instrument is described that rapidly determines the total 99Tc content of aged nuclear waste samples, where the matrix is chemically and radiologically complex and the existing speciation of the 99Tc is variable. The monitor links microwave-assisted sample preparation with an automated anion exchange column separation and detection using a flow-through solid scintillator detector. The sample preparation steps acidify the sample, decompose organics, and convert all Tc species to the pertechnetate anion. The column-based anion exchange procedure separates the pertechnetate from the complex sample matrix, so that radiometric detection can provide accurate measurement of 99Tc. We developed a preprogrammed spike addition procedure to automatically determine matrix-matched calibration. The overall measurement efficiency that is determined simultaneously provides a self-diagnostic parameter for the radiochemical separation and overall instrument function. Continuous, automated operation was demonstrated over the course of 54 h, which resulted in the analysis of 215 samples plus 54 hly spike-addition samples, with consistent overall measurement efficiency for the operation of the monitor. A sample can be processed and measured automatically in just 12.5 min with a detection limit of 23.5 Bq/mL of 99Tc in low activity waste (0.495 mL sample volume), with better than 10% RSD precision at concentrations above the quantification limit. This rapid automated analysis method was developed to support nuclear waste processing operations planned for the Hanford nuclear site.

  7. March 2011 Groundwater Sampling at the Project Shoal Site (Data Validation Package)

    SciTech Connect

    2011-07-01

    The U.S. Department of Energy Office of Legacy Management conducted annual sampling at the Project Shoal Area (Shoal) in March 2011. Wells HC-1, HC-2, HC-4, HC-5, HC-6, HC-7, MV-1, MV-2 and MV-3 were sampled as specified in the Sampling and Analysis Plan for U.S. Department of Energy Office of Legacy Management Sites (LMS/PLN/S04351, continually updated). Two extra tritium samples were collected from well HC-4, one sample (HC-4-400) was collected at about 1/3 of the purge volume (135 gallons), the second sample (HC-4-400) was collected at 2/3 of purge volume (270 gallons). These additional samples were collected prior to completing the well purging process to evaluate the effects well purging has on the analytical results. Samples were not collected from locations HC-3 and HC-8 at the direction of the S.M. Stoller Corporation site lead.

  8. Determination of actinides in environmental samples using an automated batch preconcentration/matrix elimination system

    SciTech Connect

    Smith, F.G.; Crain, J.S.

    1995-12-31

    The determination of thorium, uranium, and uranium progeny (e.g. {sup 226}Ra) in environmental samples is of considerable interest in terms of human health. Traditional radiochemical determinations of long-lived radioisotopes often require rigorous chemical separations and long duration measurements by techniques such as {alpha}-spectrometry. Inductively coupled plasma mass spectrometry (ICP-MS) offers sub-ppt (1 ng/L) detection limits for the actinides with minimal sample preparation and high sample throughput. However, sample preconcentration and/or matrix elimination is required to achieve required detection limits below 1ppq (1 pg/L). This paper describes a batch preconcentration/matrix elimination system for off-line sample preparation. An aliquot of an actinide selective polymer beads is added to a sample and pumped through a filter. Unbound sample matrix components are washed to waste then the beads with bound actinides are released in a small volume. The preconcentrate is then introduced to the ICP-MS by pneumatic or ultrasonic nebulization. Data for a variety of natural water matrices (well, spring, lake, river, and tapwater) will be presented.

  9. Application of on-line HPLC-1H NMR to environmental samples: analysis of groundwater near former ammunition plants.

    PubMed

    Godejohann, M; Preiss, A; Mügge, C; Wünsch, G

    1997-09-15

    Coupling of HPLC to NMR was applied for the first time to the analysis of environmental samples, i.e., water samples from an ammunition hazardous waste site. Using the continuous flow mode at very low flow rates (< or = 0.017 mL/min) and large volume injection (400 microL), the confirmation of many nitroaromatic compounds could be achieved down to the microgram-per-liter level after solid phase extraction of a groundwater sample from a former ammunition production site. At a flow rate of 0.006 mL/min, it is possible to detect less than 29 nmol (5 micrograms) of 1,3-dinitrobenzene injected on a 75 mm x 4 mm reversed phase C-18 column (particle size, 5 microns). The results obtained by HPLC-NMR are compared to those obtained by HPLC-PDA (photodiode array) of the same sample, demonstrating that many more compounds can be identified by the former compared to the latter method as a result of coelution of major and minor components in the HPLC chromatogram. PMID:9302876

  10. Variation in aluminum, iron, and particle concentrations in oxic groundwater samples collected by use of tangential-flow ultrafiltration with low-flow sampling

    NASA Astrophysics Data System (ADS)

    Szabo, Zoltan; Oden, Jeannette H.; Gibs, Jacob; Rice, Donald E.; Ding, Yuan

    2002-02-01

    Particulates that move with ground water and those that are artificially mobilized during well purging could be incorporated into water samples during collection and could cause trace-element concentrations to vary in unfiltered samples, and possibly in filtered samples (typically 0.45-um (micron) pore size) as well, depending on the particle-size fractions present. Therefore, measured concentrations may not be representative of those in the aquifer. Ground water may contain particles of various sizes and shapes that are broadly classified as colloids, which do not settle from water, and particulates, which do. In order to investigate variations in trace-element concentrations in ground-water samples as a function of particle concentrations and particle-size fractions, the U.S. Geological Survey, in cooperation with the U.S. Air Force, collected samples from five wells completed in the unconfined, oxic Kirkwood-Cohansey aquifer system of the New Jersey Coastal Plain. Samples were collected by purging with a portable pump at low flow (0.2-0.5 liters per minute and minimal drawdown, ideally less than 0.5 foot). Unfiltered samples were collected in the following sequence: (1) within the first few minutes of pumping, (2) after initial turbidity declined and about one to two casing volumes of water had been purged, and (3) after turbidity values had stabilized at less than 1 to 5 Nephelometric Turbidity Units. Filtered samples were split concurrently through (1) a 0.45-um pore size capsule filter, (2) a 0.45-um pore size capsule filter and a 0.0029-um pore size tangential-flow filter in sequence, and (3), in selected cases, a 0.45-um and a 0.05-um pore size capsule filter in sequence. Filtered samples were collected concurrently with the unfiltered sample that was collected when turbidity values stabilized. Quality-assurance samples consisted of sequential duplicates (about 25 percent) and equipment blanks. Concentrations of particles were determined by light scattering.

  11. Plan for proposed aquifer hydraulic testing and groundwater sampling at Everest, Kansas, in January-February 2006.

    SciTech Connect

    LaFreniere, L. M.; Environmental Science Division

    2006-01-31

    On September 8-9, 2005, representatives of the Kansas Department of Health and Environment (KDHE), the Commodity Credit Corporation of the U.S. Department of Agriculture (CCC/USDA), and Argonne National Laboratory met at the KDHE's offices in Topeka to review the status of the CCC/USDA's environmental activities in Kansas. A key CCC/USDA goal for this meeting was to obtain KDHE input on the selection of possible remedial approaches to be examined as part of the Corrective Action Study (CAS) for this site. As a result of the September meeting, the KDHE recommended several additional activities for the Everest site, to further assist in selecting and evaluating remedial alternatives for the CAS. The requested actions included the following: (1) Construction of several additional interpretive cross sections to improve the depiction of the hydrogeologic characteristics affecting groundwater and contaminant movement along the apparent main plume migration pathway to the north-northwest of the former CCC/USDA facility, and in the vicinity of the Nigh property. (2) Identification of potential locations for several additional monitoring wells, to better constrain the apparent western and northwestern margins of the existing groundwater plume. (3) Development of technical recommendations for a stepwise pumping study of the Everest aquifer unit in the area near and to the north of the Nigh property. On October 21, 2005, Argonne issued a brief Cross Section Analysis (Argonne 2006a) addressing these concerns, on behalf of the CCC/USDA. This report includes the following: (1) Preliminary recommendations for the siting of three new monitoring wells, at locations identified by the KDHE. Argonne also suggested, however, that the installation and sampling of these wells be deferred until after completion of the CAS evaluation. (2) A proposed strategy for testing of the Everest aquifer unit near the Nigh property, involving initial test pumping of the former Nigh domestic well and

  12. Investigation of Mercury Wet Deposition Physicochemistry in the Ohio River Valley through Automated Sequential Sampling

    EPA Science Inventory

    Intra-storm variability and soluble fractionation was explored for summer-time rain events in Steubenville, Ohio to evaluate the physical processes controlling mercury (Hg) in wet deposition in this industrialized region. Comprehensive precipitation sample collection was conducte...

  13. May 2011 Groundwater Sampling at the Central Nevada Test Area (Data Validation Package)

    SciTech Connect

    2011-11-01

    The U.S. Department of Energy Office of Legacy Management conducted annual sampling at the Central Nevada Test Area (CNTA) on May 10-11, 2011, in accordance with the 2004 Correction Action Decision Document/Corrective Action Plan for Corrective Action Unit 443: Central Nevada Test Area (CNTA)-Subsurface and the addendum to the "Corrective Action Decision Document/Corrective Action Plan" completed in 2008. Sampling and analysis were conducted as specified in the Sampling and Analysis Plan for U.S. Department of Energy Office of Legacy Management Sites (LMS/PLN/S04351), continually updated).

  14. May 2010 Groundwater Sampling at the Central Nevada Test Area (Data Validation Package)

    SciTech Connect

    2011-02-01

    The U.S. Department of Energy Office of Legacy Management conducted annual sampling at the Central Nevada Test Area (CNTA) on June 7-9, 2010, in accordance with the 2004 Correction Action Decision Document/Corrective Action Plan for Corrective Action Unit 443: Central Nevada Test Area (CNTA)-Subsurface. Sampling and analysis were conducted as specified in the Sampling and Analysis Plan for U.S. Department of Energy Office of Legacy Management Sites (LMS/PLN/S04351), continually updated).

  15. June 2012 Groundwater Sampling at the Central Nevada Test Area (Data Validation Package)

    SciTech Connect

    2013-03-01

    The U.S. Department of Energy Office of Legacy Management conducted annual sampling at the Central Nevada Test Area (CNTA) on June 26-27, 2012, in accordance with the 2004 Correction Action Decision Document/Corrective Action Plan for Corrective Action Unit 443: Central Nevada Test Area (CNTA)-Subsurface and the addendum to the "Corrective Action Decision Document/Corrective Action Plan" completed in 2008. Sampling and analysis were conducted as specified in the Sampling and Analysis Plan for U.S. Department of Energy Office of Legacy Management Sites (LMS/PLN/S04351), continually updated).

  16. Automated sample preparation station for studying self-diffusion in porous solids with NMR spectroscopy

    SciTech Connect

    Hedin, Niklas; DeMartin, Gregory J.; Reyes, Sebastian C.

    2006-03-15

    In studies of gas diffusion in porous solids with nuclear magnetic resonance (NMR) spectroscopy the sample preparation procedure becomes very important. An apparatus is presented here that pretreats the sample ex situ and accurately sets the desired pressure and temperature within the NMR tube prior to its introduction in the spectrometer. The gas manifold that supplies the NMR tube is also connected to a microbalance containing another portion of the same sample, which is kept at the same temperature as the sample in the NMR tube. This arrangement permits the simultaneous measurement of the adsorption loading on the sample, which is required for the interpretation of the NMR diffusion experiments. Furthermore, to ensure a good seal of the NMR tube, a hybrid valve design composed of titanium, a Teflon registered seat, and Kalrez registered O-rings is utilized. A computer controlled algorithm ensures the accuracy and reproducibility of all the procedures, enabling the NMR diffusion experiments to be performed at well controlled conditions of pressure, temperature, and amount of gas adsorbed on the porous sample.

  17. An automated gas exchange tank for determining gas transfer velocities in natural seawater samples

    NASA Astrophysics Data System (ADS)

    Schneider-Zapp, K.; Salter, M. E.; Upstill-Goddard, R. C.

    2014-07-01

    In order to advance understanding of the role of seawater surfactants in the air-sea exchange of climatically active trace gases via suppression of the gas transfer velocity (kw), we constructed a fully automated, closed air-water gas exchange tank and coupled analytical system. The system allows water-side turbulence in the tank to be precisely controlled with an electronically operated baffle. Two coupled gas chromatographs and an integral equilibrator, connected to the tank in a continuous gas-tight system, allow temporal changes in the partial pressures of SF6, CH4 and N2O to be measured simultaneously in the tank water and headspace at multiple turbulence settings, during a typical experimental run of 3.25 h. PC software developed by the authors controls all operations and data acquisition, enabling the optimisation of experimental conditions with high reproducibility. The use of three gases allows three independent estimates of kw for each turbulence setting; these values are subsequently normalised to a constant Schmidt number for direct comparison. The normalised kw estimates show close agreement. Repeated experiments with Milli-Q water demonstrate a typical measurement accuracy of 4% for kw. Experiments with natural seawater show that the system clearly resolves the effects on kw of spatial and temporal trends in natural surfactant activity. The system is an effective tool with which to probe the relationships between kw, surfactant activity and biogeochemical indices of primary productivity, and should assist in providing valuable new insights into the air-sea gas exchange process.

  18. An automated gas exchange tank for determining gas transfer velocities in natural seawater samples

    NASA Astrophysics Data System (ADS)

    Schneider-Zapp, K.; Salter, M. E.; Upstill-Goddard, R. C.

    2014-02-01

    In order to advance understanding of the role of seawater surfactants in the air-sea exchange of climatically active trace gases via suppression of the gas transfer velocity (kw), we constructed a fully automated, closed air-water gas exchange tank and coupled analytical system. The system allows water-side turbulence in the tank to be precisely controlled with an electronically operated baffle. Two coupled gas chromatographs and an integral equilibrator, connected to the tank in a continuous gas-tight system, allow temporal changes in the partial pressures of SF6, CH4 and N2O to be measured simultaneously in the tank water and headspace at multiple turbulence settings, during a typical experimental run of 3.25 h. PC software developed by the authors controls all operations and data acquisition, enabling the optimisation of experimental conditions with high reproducibility. The use of three gases allows three independent estimates of kw for each turbulence setting; these values are subsequently normalised to a constant Schmidt number for direct comparison. The normalised kw estimates show close agreement. Repeated experiments with MilliQ water demonstrate a typical measurement accuracy of 4% for kw. Experiments with natural seawater show that the system clearly resolves the effects on kw of spatial and temporal trends in natural surfactant activity. The system is an effective tool with which to probe the relationships between kw, surfactant activity and biogeochemical indices of primary productivity, and should assist in providing valuable new insights into the air-sea gas exchange process.

  19. Development of a full automation solid phase microextraction method for investigating the partition coefficient of organic pollutant in complex sample.

    PubMed

    Jiang, Ruifen; Lin, Wei; Wen, Sijia; Zhu, Fang; Luan, Tiangang; Ouyang, Gangfeng

    2015-08-01

    A fully automated solid phase microextraction (SPME) depletion method was developed to study the partition coefficient of organic compound between complex matrix and water sample. The SPME depletion process was conducted by pre-loading the fiber with a specific amount of organic compounds from a proposed standard gas generation vial, and then desorbing the fiber into the targeted samples. Based on the proposed method, the partition coefficients (Kmatrix) of 4 polyaromatic hydrocarbons (PAHs) between humic acid (HA)/hydroxypropyl-β-cyclodextrin (β-HPCD) and aqueous sample were determined. The results showed that the logKmatrix of 4 PAHs with HA and β-HPCD ranged from 3.19 to 4.08, and 2.45 to 3.15, respectively. In addition, the logKmatrix values decreased about 0.12-0.27 log units for different PAHs for every 10°C increase in temperature. The effect of temperature on the partition coefficient followed van't Hoff plot, and the partition coefficient at any temperature can be predicted based on the plot. Furthermore, the proposed method was applied for the real biological fluid analysis. The partition coefficients of 6 PAHs between the complex matrices in the fetal bovine serum and water were determined, and compared to ones obtained from SPME extraction method. The result demonstrated that the proposed method can be applied to determine the sorption coefficients of hydrophobic compounds between complex matrix and water in a variety of samples. PMID:26118804

  20. Detection of motile micro-organisms in biological samples by means of a fully automated image processing system

    NASA Astrophysics Data System (ADS)

    Alanis, Elvio; Romero, Graciela; Alvarez, Liliana; Martinez, Carlos C.; Hoyos, Daniel; Basombrio, Miguel A.

    2001-08-01

    A fully automated image processing system for detection of motile microorganism is biological samples is presented. The system is specifically calibrated for determining the concentration of Trypanosoma Cruzi parasites in blood samples of mice infected with Chagas disease. The method can be adapted for use in other biological samples. A thin layer of blood infected by T. cruzi parasites is examined in a common microscope in which the images of the vision field are taken by a CCD camera and temporarily stored in the computer memory. In a typical field, a few motile parasites are observable surrounded by blood red cells. The parasites have low contrast. Thus, they are difficult to detect visually but their great motility betrays their presence by the movement of the nearest neighbor red cells. Several consecutive images of the same field are taken, decorrelated with each other where parasites are present, and digitally processed in order to measure the number of parasites present in the field. Several fields are sequentially processed in the same fashion, displacing the sample by means of step motors driven by the computer. A direct advantage of this system is that its results are more reliable and the process is less time consuming than the current subjective evaluations made visually by technicians.

  1. Automated total and radioactive strontium separation and preconcentration in samples of environmental interest exploiting a lab-on-valve system.

    PubMed

    Rodríguez, Rogelio; Avivar, Jessica; Ferrer, Laura; Leal, Luz O; Cerdà, Victor

    2012-07-15

    A novel lab-on-valve system has been developed for strontium determination in environmental samples. Miniaturized lab-on-valve system potentially offers facilities to allow any kind of chemical and physical processes, including fluidic and microcarrier bead control, homogenous reaction and liquid-solid interaction. A rapid, inexpensive and fully automated method for the separation and preconcentration of total and radioactive strontium, using a solid phase extraction material (Sr-Resin), has been developed. Total strontium concentrations are determined by ICP-OES and (90)Sr activities by a low background proportional counter. The method has been successfully applied to different water samples of environmental interest. The proposed system offers minimization of sample handling, drastic reduction of reagent volume, improvement of the reproducibility and sample throughput and attains a significant decrease of both time and cost per analysis. The LLD of the total Sr reached is 1.8ng and the minimum detectable activity for (90)Sr is 0.008Bq. The repeatability of the separation procedure is 1.2% (n=10). PMID:22817934

  2. MICROBIOLOGICAL FIELD SAMPLING AND INSTRUMENTATION IN THE ASSESSMENT OF SOIL AND GROUND-WATER POLLUTION

    EPA Science Inventory

    This chapter emphasizes the importance of microbiological sampling of soil and ground water with respect to human heath risks, laws and regulations dealing with safe drinking water, and more prevalent subsurface monitoring activities associated with chlorinated organic compounds,...

  3. Automated Broad-Range Molecular Detection of Bacteria in Clinical Samples.

    PubMed

    Budding, Andries E; Hoogewerf, Martine; Vandenbroucke-Grauls, Christina M J E; Savelkoul, Paul H M

    2016-04-01

    Molecular detection methods, such as quantitative PCR (qPCR), have found their way into clinical microbiology laboratories for the detection of an array of pathogens. Most routinely used methods, however, are directed at specific species. Thus, anything that is not explicitly searched for will be missed. This greatly limits the flexibility and universal application of these techniques. We investigated the application of a rapid universal bacterial molecular identification method, IS-pro, to routine patient samples received in a clinical microbiology laboratory. IS-pro is a eubacterial technique based on the detection and categorization of 16S-23S rRNA gene interspace regions with lengths that are specific for each microbial species. As this is an open technique, clinicians do not need to decide in advance what to look for. We compared routine culture to IS-pro using 66 samples sent in for routine bacterial diagnostic testing. The samples were obtained from patients with infections in normally sterile sites (without a resident microbiota). The results were identical in 20 (30%) samples, IS-pro detected more bacterial species than culture in 31 (47%) samples, and five of the 10 culture-negative samples were positive with IS-pro. The case histories of the five patients from whom these culture-negative/IS-pro-positive samples were obtained suggest that the IS-pro findings are highly clinically relevant. Our findings indicate that an open molecular approach, such as IS-pro, may have a high added value for clinical practice. PMID:26763956

  4. Low-Cost 3D Printers Enable High-Quality and Automated Sample Preparation and Molecular Detection

    PubMed Central

    Chan, Kamfai; Coen, Mauricio; Hardick, Justin; Gaydos, Charlotte A.; Wong, Kah-Yat; Smith, Clayton; Wilson, Scott A.; Vayugundla, Siva Praneeth; Wong, Season

    2016-01-01

    Most molecular diagnostic assays require upfront sample preparation steps to isolate the target’s nucleic acids, followed by its amplification and detection using various nucleic acid amplification techniques. Because molecular diagnostic methods are generally rather difficult to perform manually without highly trained users, automated and integrated systems are highly desirable but too costly for use at point-of-care or low-resource settings. Here, we showcase the development of a low-cost and rapid nucleic acid isolation and amplification platform by modifying entry-level 3D printers that cost between $400 and $750. Our modifications consisted of replacing the extruder with a tip-comb attachment that houses magnets to conduct magnetic particle-based nucleic acid extraction. We then programmed the 3D printer to conduct motions that can perform high-quality extraction protocols. Up to 12 samples can be processed simultaneously in under 13 minutes and the efficiency of nucleic acid isolation matches well against gold-standard spin-column-based extraction technology. Additionally, we used the 3D printer’s heated bed to supply heat to perform water bath-based polymerase chain reactions (PCRs). Using another attachment to hold PCR tubes, the 3D printer was programmed to automate the process of shuttling PCR tubes between water baths. By eliminating the temperature ramping needed in most commercial thermal cyclers, the run time of a 35-cycle PCR protocol was shortened by 33%. This article demonstrates that for applications in resource-limited settings, expensive nucleic acid extraction devices and thermal cyclers that are used in many central laboratories can be potentially replaced by a device modified from inexpensive entry-level 3D printers. PMID:27362424

  5. Low-Cost 3D Printers Enable High-Quality and Automated Sample Preparation and Molecular Detection.

    PubMed

    Chan, Kamfai; Coen, Mauricio; Hardick, Justin; Gaydos, Charlotte A; Wong, Kah-Yat; Smith, Clayton; Wilson, Scott A; Vayugundla, Siva Praneeth; Wong, Season

    2016-01-01

    Most molecular diagnostic assays require upfront sample preparation steps to isolate the target's nucleic acids, followed by its amplification and detection using various nucleic acid amplification techniques. Because molecular diagnostic methods are generally rather difficult to perform manually without highly trained users, automated and integrated systems are highly desirable but too costly for use at point-of-care or low-resource settings. Here, we showcase the development of a low-cost and rapid nucleic acid isolation and amplification platform by modifying entry-level 3D printers that cost between $400 and $750. Our modifications consisted of replacing the extruder with a tip-comb attachment that houses magnets to conduct magnetic particle-based nucleic acid extraction. We then programmed the 3D printer to conduct motions that can perform high-quality extraction protocols. Up to 12 samples can be processed simultaneously in under 13 minutes and the efficiency of nucleic acid isolation matches well against gold-standard spin-column-based extraction technology. Additionally, we used the 3D printer's heated bed to supply heat to perform water bath-based polymerase chain reactions (PCRs). Using another attachment to hold PCR tubes, the 3D printer was programmed to automate the process of shuttling PCR tubes between water baths. By eliminating the temperature ramping needed in most commercial thermal cyclers, the run time of a 35-cycle PCR protocol was shortened by 33%. This article demonstrates that for applications in resource-limited settings, expensive nucleic acid extraction devices and thermal cyclers that are used in many central laboratories can be potentially replaced by a device modified from inexpensive entry-level 3D printers. PMID:27362424

  6. Automation of preparation of nonmetallic samples for analysis by atomic absorption and inductively coupled plasma spectrometry

    NASA Technical Reports Server (NTRS)

    Wittmann, A.; Willay, G.

    1986-01-01

    For a rapid preparation of solutions intended for analysis by inductively coupled plasma emission spectrometry or atomic absorption spectrometry, an automatic device called Plasmasol was developed. This apparatus used the property of nonwettability of glassy C to fuse the sample in an appropriate flux. The sample-flux mixture is placed in a composite crucible, then heated at high temperature, swirled until full dissolution is achieved, and then poured into a water-filled beaker. After acid addition, dissolution of the melt, and filling to the mark, the solution is ready for analysis. The analytical results obtained, either for oxide samples or for prereduced iron ores show that the solutions prepared with this device are undistinguished from those obtained by manual dissolutions done by acid digestion or by high temperature fusion. Preparation reproducibility and analytical tests illustrate the performance of Plasmasol.

  7. Automated sample preparation for ICP analysis of active pharmaceutical ingredients and intermediates.

    PubMed

    Sims, Jonathan; Smith, Andrew; Patel, Dharmista; Batchelor, Richard; Carreira, Judith

    2011-10-01

    Routine testing of active pharmaceutical ingredients (APIs) for metal residues is an expectation of regulatory bodies such as the FDA (U.S. Food and Drug Administration). Sample preparation techniques are the rate-limiting step in the testing process and can be variable depending on the specific characteristics of the API under test. Simplification and standardization of the routine preparation of inductively coupled plasma spectroscopy sample solutions of organic compounds has been developed using a commercially available robotic workstation. Contamination from the metal components of the instrument and from sample tubes used in the methodology has been studied using a Design of Experiments approach. The optimized method described can be used for the measurement of trace metals in Pharmaceuticals at levels compliant with European and U.S. regulatory requirements. PMID:21906564

  8. Construction and calibration of a low cost and fully automated vibrating sample magnetometer

    NASA Astrophysics Data System (ADS)

    El-Alaily, T. M.; El-Nimr, M. K.; Saafan, S. A.; Kamel, M. M.; Meaz, T. M.; Assar, S. T.

    2015-07-01

    A low cost vibrating sample magnetometer (VSM) has been constructed by using an electromagnet and an audio loud speaker; where both are controlled by a data acquisition device. The constructed VSM records the magnetic hysteresis loop up to 8.3 KG at room temperature. The apparatus has been calibrated and tested by using magnetic hysteresis data of some ferrite samples measured by two scientifically calibrated magnetometers; model (Lake Shore 7410) and model (LDJ Electronics Inc. Troy, MI). Our VSM lab-built new design proved success and reliability.

  9. October 1999 Groundwater Sampling and Data Analysis, Distler Brickyard Site, Hardin County, Kentucky

    SciTech Connect

    J. P. Martin, L. N. Peterson; C. J. Taylor

    2000-03-01

    This report describes the results of a sampling event conducted at the Distler Brickyard Superfund Site, Hardin County, Kentucky, October 1999. The purpose of the sampling event was to evaluate the extent of natural biodegradation of chlorinated aliphatic hydrocarbons (CAH) occurring at the Site. Sampling locations were selected to evaluate three areas of the suspected CAH plume: the source area, an axial cross-section, and a downgradient transect. Due to inadequate recharge to and the poor physical condition of some monitoring wells at the Site, the sampling approach was modified to reflect wells that could be sampled. Results indicate that natural anaerobic degradation of chlorinated aliphatic hydrocarbons is occurring in the presumed source area around monitoring well GW-11. The primary contaminant of concern, trichloroethene, migrates downgradient from the source area into the Coarse Grained Alluvium Aquifer at concentrations slightly greater than the Maximum Contaminant Level (MCL). Based on the available, the following hypothesis is proposed: the source area has been remediated through soil removal activities and subsequent anaerobic reductive dechlorination. If this is the case, this Site may be a good candidate for implementation of a monitored natural attenuation remedy. However, more data are necessary before this hypothesis can be confirmed.

  10. Multiobjective sampling design for parameter estimation and model discrimination in groundwater solute transport

    USGS Publications Warehouse

    Knopman, D.S.; Voss, C.I.

    1989-01-01

    Optimal design of a sampling network is a sequential process in which the next phase of sampling is designed on the basis of all available physical knowledge of the system. Three objectives are considered: model discrimination, parameter estimation, and cost minimization. For the first two objectives, physically based measures of the value of information obtained from a set of observations are specified. In model discrimination, value of information of an observation point is measured in terms of the difference in solute concentration predicted by hypothesized models of transport. Points of greatest difference in predictions can contribute the most information to the discriminatory power of a sampling design. Sensitivity of solute concentration to a change in a parameter contributes information on the relative variance of a parameter estimate. Inclusion of points in a sampling design with high sensitivities to parameters tends to reduce variance in parameter estimates. Cost minimization accounts for both the capital cost of well installation and the operating costs of collection and analysis of field samples. -from Authors

  11. Determination of submicrogram-per-liter concentrations of caffeine in surface water and groundwater samples by solid-phase extraction and liquid chromatography

    USGS Publications Warehouse

    Burkhardt, M.R.; Soliven, P.P.; Werner, S.L.; Vaught, D.G.

    1999-01-01

    A method for determining submicrogram-per-liter concentrations of caffeine in surface water and groundwater samples has been developed. Caffeine is extracted from a 1 L water sample with a 0.5 g graphitized carbon-based solid-phase cartridge, eluted with methylene chloride-methanol (80 + 20, v/v), and analyzed by liquid chromatography with photodiode-array detection. The single-operator method detection limit for organic-free water samples was 0.02 ??g/L. Mean recoveries and relative standard deviations were 93 ?? 13% for organicfree water samples fortified at 0.04 ??g/L and 84 ?? 4% for laboratory reagent spikes fortified at 0.5 ??g/L. Environmental concentrations of caffeine ranged from 0.003 to 1.44 ??g/L in surface water samples and from 0.01 to 0.08 ??g/L in groundwater samples.

  12. AUTOMATED SYSTEM FOR COLLECTING MULTIPLE, SEQUENTIAL SAMPLES FROM SOIL WATER SAMPLERS UNDER CONTINUOUS VACUUM

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Manually collecting a series of sequential, discrete water samples from soil water percolation samplers, or similar devices, that withdraw water from unsaturated porous media under continuous vacuum is a logistical challenge, though the resulting collection can provide valuable information on the dy...

  13. A self-contained polymeric cartridge for automated biological sample preparation.

    PubMed

    Xu, Guolin; Lee, Daniel Yoke San; Xie, Hong; Chiew, Deon; Hsieh, Tseng-Ming; Ali, Emril Mohamed; Lun Looi, Xing; Li, Mo-Huang; Ying, Jackie Y

    2011-09-01

    Sample preparation is one of the most crucial processes for nucleic acids based disease diagnosis. Several steps are required for nucleic acids extraction, impurity washes, and DNA/RNA elution. Careful sample preparation is vital to the obtaining of reliable diagnosis, especially with low copies of pathogens and cells. This paper describes a low-cost, disposable lab cartridge for automatic sample preparation, which is capable of handling flexible sample volumes of 10 μl to 1 ml. This plastic cartridge contains all the necessary reagents for pathogen and cell lysis, DNA/RNA extraction, impurity washes, DNA/RNA elution and waste processing in a completely sealed cartridge. The entire sample preparation processes are automatically conducted within the cartridge on a desktop unit using a pneumatic fluid manipulation approach. Reagents transportation is achieved with a combination of push and pull forces (with compressed air and vacuum, respectively), which are connected to the pneumatic inlets at the bottom of the cartridge. These pneumatic forces are regulated by pinch valve manifold and two pneumatic syringe pumps within the desktop unit. The performance of this pneumatic reagent delivery method was examined. We have demonstrated the capability of the on-cartridge RNA extraction and cancer-specific gene amplification from 10 copies of MCF-7 breast cancer cells. The on-cartridge DNA recovery efficiency was 54-63%, which was comparable to or better than the conventional manual approach using silica spin column. The lab cartridge would be suitable for integration with lab-chip real-time polymerase chain reaction devices in providing a portable system for decentralized disease diagnosis. PMID:22662036

  14. Sampling and analysis plan for the site characterization of the waste area Grouping 1 groundwater operable unit at Oak Ridge National Laboratory

    SciTech Connect

    1994-11-01

    Waste Area Grouping (WAG) 1 at Oak Ridge National Laboratory (ORNL) includes all of the former ORNL radioisotope research, production, and maintenance facilities; former waste management areas; and some former administrative buildings. Site operations have contaminated groundwater, principally with radiological contamination. An extensive network of underground pipelines and utilities have contributed to the dispersal of contaminants to a known extent. In addition, karst geology, numerous spills, and pipeline leaks, together with the long and varied history of activities at specific facilities at ORNL, complicate contaminant migration-pathway analysis and source identification. To evaluate the extent of contamination, site characterization activity will include semiannual and annual groundwater sampling, as well as monthly water level measurements (both manual and continuous) at WAG 1. This sampling and analysis plan provides the methods and procedures to conduct site characterization for the Phase 1 Remedial Investigation of the WAG 1 Groundwater Operable Unit.

  15. DETERMINATION OF CHLOROPHEONIS, NITROPHENOIS AND METHYLPHENOIS IN GROUND-WATER SAMPLES USING HIGH PERFORMANCE LIQUID CHROMATOGRAPHY

    EPA Science Inventory

    A high performance liquid chromatography (HPLC) method was developed to quantitatively determine phenolic compounds and their isomers in aqueous samples. The HPLC method can analyze a mixture of 15 contaminants in the same analytical run with an analysis time of 25 minutes. The...

  16. DETERMINATION OF CHLOROPHENOLS, NITROPHENOLS, AND METHYLPHENOLS IN GROUND-WATER SAMPLES USING HIGH PERFORMANCE LIQUID CHROMATOGRAPHY

    EPA Science Inventory

    A high performance liquid chromatography (HPLC) method was developed to quantitatively determine phenolic compounds and their isomers in aqueous samples. The HPLC method can analyze a mixture of 15 contaminants in the same analytical run with an analysis time of 25 minutes. The...

  17. Guidelines for collection and field analysis of ground-water samples for selected unstable constituents

    USGS Publications Warehouse

    Wood, Warren W.

    1976-01-01

    The unstable nature of many chemical and physical constituents in ground water requires special collection procedures and field analysis immediately after collection. This report describes the techniques and equipment commonly used m the collection and field analysis of samples for pH, temperature, carbonate, bicarbonate, specific conductance, Eh, and dissolved oxygen.

  18. Development of an Automated and Sensitive Microfluidic Device for Capturing and Characterizing Circulating Tumor Cells (CTCs) from Clinical Blood Samples

    PubMed Central

    Gogoi, Priya; Sepehri, Saedeh; Zhou, Yi; Gorin, Michael A.; Paolillo, Carmela; Capoluongo, Ettore; Gleason, Kyle; Payne, Austin; Boniface, Brian; Cristofanilli, Massimo; Morgan, Todd M.; Fortina, Paolo; Pienta, Kenneth J.; Handique, Kalyan; Wang, Yixin

    2016-01-01

    Current analysis of circulating tumor cells (CTCs) is hindered by sub-optimal sensitivity and specificity of devices or assays as well as lack of capability of characterization of CTCs with clinical biomarkers. Here, we validate a novel technology to enrich and characterize CTCs from blood samples of patients with metastatic breast, prostate and colorectal cancers using a microfluidic chip which is processed by using an automated staining and scanning system from sample preparation to image processing. The Celsee system allowed for the detection of CTCs with apparent high sensitivity and specificity (94% sensitivity and 100% specificity). Moreover, the system facilitated rapid capture of CTCs from blood samples and also allowed for downstream characterization of the captured cells by immunohistochemistry, DNA and mRNA fluorescence in-situ hybridization (FISH). In a subset of patients with prostate cancer we compared the technology with a FDA-approved CTC device, CellSearch and found a higher degree of sensitivity with the Celsee instrument. In conclusion, the integrated Celsee system represents a promising CTC technology for enumeration and molecular characterization. PMID:26808060

  19. Development of an Automated and Sensitive Microfluidic Device for Capturing and Characterizing Circulating Tumor Cells (CTCs) from Clinical Blood Samples.

    PubMed

    Gogoi, Priya; Sepehri, Saedeh; Zhou, Yi; Gorin, Michael A; Paolillo, Carmela; Capoluongo, Ettore; Gleason, Kyle; Payne, Austin; Boniface, Brian; Cristofanilli, Massimo; Morgan, Todd M; Fortina, Paolo; Pienta, Kenneth J; Handique, Kalyan; Wang, Yixin

    2016-01-01

    Current analysis of circulating tumor cells (CTCs) is hindered by sub-optimal sensitivity and specificity of devices or assays as well as lack of capability of characterization of CTCs with clinical biomarkers. Here, we validate a novel technology to enrich and characterize CTCs from blood samples of patients with metastatic breast, prostate and colorectal cancers using a microfluidic chip which is processed by using an automated staining and scanning system from sample preparation to image processing. The Celsee system allowed for the detection of CTCs with apparent high sensitivity and specificity (94% sensitivity and 100% specificity). Moreover, the system facilitated rapid capture of CTCs from blood samples and also allowed for downstream characterization of the captured cells by immunohistochemistry, DNA and mRNA fluorescence in-situ hybridization (FISH). In a subset of patients with prostate cancer we compared the technology with a FDA-approved CTC device, CellSearch and found a higher degree of sensitivity with the Celsee instrument. In conclusion, the integrated Celsee system represents a promising CTC technology for enumeration and molecular characterization. PMID:26808060

  20. Automated flow-through amperometric immunosensor for highly sensitive and on-line detection of okadaic acid in mussel sample.

    PubMed

    Dominguez, Rocio B; Hayat, Akhtar; Sassolas, Audrey; Alonso, Gustavo A; Munoz, Roberto; Marty, Jean-Louis

    2012-09-15

    An electrochemical immunosensor for okadaic acid (OA) detection has been developed, and used in an indirect competitive immunoassay format under automated flow conditions. The biosensor was fabricated by injecting OA modified magnetic beads onto screen printed carbon electrode (SPCE) in the flow system. The OA present in the sample competed with the immobilized OA to bind with anti-okadaic acid monoclonal antibody (anti-OA-MAb). The secondary alkaline phosphatase labeled antibody was used to perform electrochemical detection. The current response obtained from the labeled alkaline phosphatase to 1-naphthyl phosphate decreased proportionally to the concentration of free OA in the sample. The calculated limit of detection (LOD) was 0.15 μg/L with a linear range of 0.19-25 μg/L. The good recoveries percentages validated the immunosensor application for real mussel samples. The developed system automatically controlled the incubation, washing and current measurement steps, showing its potential use for OA determination in field analysis. PMID:22967546

  1. Variation in aluminum, iron, and particle concentrations in oxic ground-water samples collected by use of tangential-flow ultrafiltration with low-flow sampling

    USGS Publications Warehouse

    Szabo, Z.; Oden, J.H.; Gibs, J.; Rice, D.E.; Ding, Y.

    2001-01-01

    Particulates that move with ground water and those that are artificially mobilized during well purging could be incorporated into water samples during collection and could cause trace-element concentrations to vary in unfiltered samples, and possibly in filtered samples (typically 0.45-um (micron) pore size) as well, depending on the particle-size fractions present. Therefore, measured concentrations may not be representative of those in the aquifer. Ground water may contain particles of various sizes and shapes that are broadly classified as colloids, which do not settle from water, and particulates, which do. In order to investigate variations in trace-element concentrations in ground-water samples as a function of particle concentrations and particle-size fractions, the U.S. Geological Survey, in cooperation with the U.S. Air Force, collected samples from five wells completed in the unconfined, oxic Kirkwood-Cohansey aquifer system of the New Jersey Coastal Plain. Samples were collected by purging with a portable pump at low flow (0.2-0.5 liters per minute and minimal drawdown, ideally less than 0.5 foot). Unfiltered samples were collected in the following sequence: (1) within the first few minutes of pumping, (2) after initial turbidity declined and about one to two casing volumes of water had been purged, and (3) after turbidity values had stabilized at less than 1 to 5 Nephelometric Turbidity Units. Filtered samples were split concurrently through (1) a 0.45-um pore size capsule filter, (2) a 0.45-um pore size capsule filter and a 0.0029-um pore size tangential-flow filter in sequence, and (3), in selected cases, a 0.45-um and a 0.05-um pore size capsule filter in sequence. Filtered samples were collected concurrently with the unfiltered sample that was collected when turbidity values stabilized. Quality-assurance samples consisted of sequential duplicates (about 25 percent) and equipment blanks. Concentrations of particles were determined by light scattering

  2. Automated on-line preconcentration of palladium on different sorbents and its determination in environmental samples.

    PubMed

    Sánchez Rojas, Fuensanta; Bosch Ojeda, Catalina; Cano Pavón, José Manuel

    2007-01-01

    The determination of noble metals in environmental samples is of increasing importance. Palladium is often employed as a catalyst in chemical industry and is also used with platinum and rhodium in motor car catalytic converters which might cause environmental pollution problems. Two different sorbents for palladium preconcentration in different samples were investigated: silica gel functionalized with 1,5-bis(di-2-pyridyl)methylene tbiocarbohydrazide (DPTH-gel) and [1,5-Bis(2-pyridyl)-3-sulphophenyI methylene thiocarbonohydrazide (PSTH) immobilised on an anion-exchange resin (Dowex lx8-200)]. The sorbents were tested in a micro-column, placed in the auto-sampler arm, at the flow rate 2.8 mL min(-1). Elution was performed with 4 M HCl and 4 M HNO3, respectively. Satisfactory results were obtained for two sorbents. PMID:17822233

  3. Automated microextraction sample preparation coupled on-line to FT-ICR-MS: application to desalting and concentration of river and marine dissolved organic matter.

    PubMed

    Morales-Cid, Gabriel; Gebefugi, Istvan; Kanawati, Basem; Harir, Mourad; Hertkorn, Norbert; Rosselló-Mora, Ramón; Schmitt-Kopplin, Philippe

    2009-10-01

    Sample preparation procedures are in most cases sample- and time-consuming and commonly require the use of a large amount of solvents. Automation in this regard can optimize the minimal-needed injection volume and the solvent consumption will be efficiently reduced. A new fully automated sample desalting and pre-concentration technique employing microextraction by packed sorbents (MEPS) cartridges is implemented and coupled to an ion cyclotron resonance Fourier-transform mass spectrometer (ICR-FT/MS). The performance of non-target mass spectrometric analysis is compared for the automated versus off-line sample preparation for several samples of aqueous natural organic matter. This approach can be generalized for any metabolite profiling or metabolome analysis of biological materials but was optimized herein using a well characterized but highly complex organic mixture: a surface water and its well-characterized natural organic matter and a marine sample having a highly salt charge and enabling to validate the presented automatic system for salty samples. The analysis of Suwannee River water showed selective C18-MEPS enrichment of chemical signatures with average H/C and O/C elemental ratios and loss of both highly polar and highly aromatic structures from the original sample. Automated on-line application to marine samples showed desalting and different chemical signatures from surface to bottom water. Relative comparison of structural footprints with the C18-concentration/desalting procedure however enabled to demonstrate that the surface water film was more concentrated in surface-active components of natural (fatty acids) and anthropogenic origin (sulfur-containing surfactants). Overall, the relative standard deviation distribution in terms of peak intensity was improved by automating the proposed on-line method. PMID:19685041

  4. Concentration comparison of selected constituents between groundwater samples collected within the Missouri River alluvial aquifer using purge and pump and grab-sampling methods, near the city of Independence, Missouri, 2013

    USGS Publications Warehouse

    Krempa, Heather M.

    2015-01-01

    Relative percent differences between methods were greater than 10 percent for most analyzed trace elements. Barium, cobalt, manganese, and boron had concentrations that were significantly different between sampling methods. Barium, molybdenum, boron, and uranium method concentrations indicate a close association between pump and grab samples based on bivariate plots and simple linear regressions. Grab sample concentrations were generally larger than pump concentrations for these elements and may be because of using a larger pore sized filter for grab samples. Analysis of zinc blank samples suggests zinc contamination in filtered grab samples. Variations of analyzed trace elements between pump and grab samples could reduce the ability to monitor temporal changes and potential groundwater contamination threats. The degree of precision necessary for monitoring potential groundwater threats and application objectives need to be considered when determining acceptable variation amounts.

  5. Sampling Instruction: Investigation of Hexavalent Chromium Flux to Groundwater at the 100-C-7:1 Excavation Site

    SciTech Connect

    Truex, Michael J.; Vermeul, Vincent R.

    2012-05-01

    Several types of data are needed to assess the flux of Cr(VI) from the excavation into the groundwater. As described in this plan, these data include (1) temporal Cr(VI) data in the shallow groundwater beneath the pit; (2) hydrologic data to interpret groundwater flow and contaminant transport; (3) hydraulic gradient data; and (4) as a contingency action if necessary, vertical profiling of Cr(VI) concentrations in the shallow aquifer beyond the depth possible with aquifer tubes.

  6. Steady-State Vacuum Ultraviolet Exposure Facility With Automated Lamp Calibration and Sample Positioning Fabricated

    NASA Technical Reports Server (NTRS)

    Sechkar, Edward A.; Steuber, Thomas J.; Banks, Bruce A.; Dever, Joyce A.

    2000-01-01

    The Next Generation Space Telescope (NGST) will be placed in an orbit that will subject it to constant solar radiation during its planned 10-year mission. A sunshield will be necessary to passively cool the telescope, protecting it from the Sun s energy and assuring proper operating temperatures for the telescope s instruments. This sunshield will be composed of metalized polymer multilayer insulation with an outer polymer membrane (12 to 25 mm in thickness) that will be metalized on the back to assure maximum reflectance of sunlight. The sunshield must maintain mechanical integrity and optical properties for the full 10 years. This durability requirement is most challenging for the outermost, constantly solar-facing polymer membrane of the sunshield. One of the potential threats to the membrane material s durability is from vacuum ultraviolet (VUV) radiation in wavelengths below 200 nm. Such radiation can be absorbed in the bulk of these thin polymer membrane materials and degrade the polymer s optical and mechanical properties. So that a suitable membrane material can be selected that demonstrates durability to solar VUV radiation, ground-based testing of candidate materials must be conducted to simulate the total 10- year VUV exposure expected during the Next Generation Space Telescope mission. The Steady State Vacuum Ultraviolet exposure facility was designed and fabricated at the NASA Glenn Research Center at Lewis Field to provide unattended 24-hr exposure of candidate materials to VUV radiation of 3 to 5 times the Sun s intensity in the wavelength range of 115 to 200 nm. The facility s chamber, which maintains a pressure of approximately 5 10(exp -6) torr, is divided into three individual exposure cells, each with a separate VUV source and sample-positioning mechanism. The three test cells are separated by a water-cooled copper shield plate assembly to minimize thermal effects from adjacent test cells. Part of the interior sample positioning mechanism of one

  7. Final ROI Report - Technology Transfer of Waste-Reducing Groundwater Sampling Systems

    SciTech Connect

    Noyes, C; Howard, G; Bishop, D; Tuckfield, C; Hiergesell, R

    2002-09-30

    This report presents the findings of a U.S. DOE Environmental Management technology transfer initiative of waste-reducing ground water sampling systems between Savannah River Site (SRS) and Lawrence Livermore National Laboratory (LLNL) which occurred during fiscal years 2001 and 2002. The report describes the collaboration between the two sites, the deployment of the Savannah River Site Purge Water Management System at LLNL, the changes made to that system for use at LLNL, and documents the return-on-investment derived from the system's use at LLNL as well as other benefits generated through this inter-laboratory collaboration. An evaluation of the deployment of the LLNL EasyPump sampling technology at SRS will be covered in a separate report from SRS.

  8. Improved automation of dissolved organic carbon sampling for organic-rich surface waters.

    PubMed

    Grayson, Richard P; Holden, Joseph

    2016-02-01

    In-situ UV-Vis spectrophotometers offer the potential for improved estimates of dissolved organic carbon (DOC) fluxes for organic-rich systems such as peatlands because they are able to sample and log DOC proxies automatically through time at low cost. In turn, this could enable improved total carbon budget estimates for peatlands. The ability of such instruments to accurately measure DOC depends on a number of factors, not least of which is how absorbance measurements relate to DOC and the environmental conditions. Here we test the ability of a S::can Spectro::lyser™ for measuring DOC in peatland streams with routinely high DOC concentrations. Through analysis of the spectral response data collected by the instrument we have been able to accurately measure DOC up to 66 mg L(-1), which is more than double the original upper calibration limit for this particular instrument. A linear regression modelling approach resulted in an accuracy >95%. The greatest accuracy was achieved when absorbance values for several different wavelengths were used at the same time in the model. However, an accuracy >90% was achieved using absorbance values for a single wavelength to predict DOC concentration. Our calculations indicated that, for organic-rich systems, in-situ measurement with a scanning spectrophotometer can improve fluvial DOC flux estimates by 6 to 8% compared with traditional sampling methods. Thus, our techniques pave the way for improved long-term carbon budget calculations from organic-rich systems such as peatlands. PMID:26580726

  9. 234U/238U isotope data from groundwater and solid-phase leachate samples near Tuba City Open Dump, Tuba City, Arizona

    USGS Publications Warehouse

    Johnson, Raymond H.; Horton, Robert J.; Otton, James K.; Ketterer, Michael K.

    2012-01-01

    This report releases 234U/238U isotope data, expressed as activity ratios, and uranium concentration data from analyses completed at Northern Arizona University for groundwater and solid-phase leachate samples that were collected in and around Tuba City Open Dump, Tuba City, Arizona, in 2008.

  10. Evaluation of the appropriate time period between sampling and analyzing for automated urinalysis

    PubMed Central

    Dolscheid-Pommerich, Ramona C.; Klarmann-Schulz, Ute; Conrad, Rupert; Stoffel-Wagner, Birgit; Zur, Berndt

    2016-01-01

    Introduction Preanalytical specifications for urinalysis must be strictly adhered to avoid false interpretations. Aim of the present study is to examine whether the preanalytical factor ‘time point of analysis’ significantly influences stability of urine samples for urine particle and dipstick analysis. Materials and methods In 321 pathological spontaneous urine samples, urine dipstick (Urisys™2400, Combur-10-Test™strips, Roche Diagnostics, Mannheim, Germany) and particle analysis (UF-1000 i™, Sysmex, Norderstedt, Germany) were performed within 90 min, 120 min and 240 min after urine collection. Results For urine particle analysis, a significant increase in conductivity (120 vs. 90 min: P < 0.001, 240 vs. 90 min: P < 0.001) and a significant decrease in WBC (120 vs. 90 min P < 0.001, 240 vs. 90 min P < 0.001), RBC (120 vs. 90 min P < 0.001, 240 vs. 90 min P < 0.001), casts (120 vs. 90 min P < 0.001, 240 vs. 90 min P < 0.001) and epithelial cells (120 vs. 90 min P = 0.610, 240 vs. 90 min P = 0.041) were found. There were no significant changes for bacteria. Regarding urine dipstick analysis, misclassification rates between measurements were significant for pH (120 vs. 90 min P < 0.001, 240 vs. 90 min P < 0.001), leukocytes (120 vs. 90 min P < 0.001, 240 vs. 90 min P < 0.001), nitrite (120 vs. 90 min P < 0.001, 240 vs. 90 min P < 0.001), protein (120 vs. 90 min P < 0.001, 240 vs. 90 min P<0.001), ketone (120 vs. 90 min P < 0.001, 240 vs. 90 min P < 0.001), blood (120 vs. 90 min P < 0.001, 240 vs. 90 min P < 0.001), specific gravity (120 vs. 90 min P < 0.001, 240 vs. 90 min P < 0.001) and urobilinogen (120 vs. 90 min, P = 0.031). Misclassification rates were not significant for glucose and bilirubin. Conclusion Most parameters critically depend on the time window between sampling and analysis. Our study stresses the importance of adherence to early time points in urinalysis (within 90 min). PMID:26981022

  11. Automated Large Scale Parameter Extraction of Road-Side Trees Sampled by a Laser Mobile Mapping System

    NASA Astrophysics Data System (ADS)

    Lindenbergh, R. C.; Berthold, D.; Sirmacek, B.; Herrero-Huerta, M.; Wang, J.; Ebersbach, D.

    2015-08-01

    In urbanized Western Europe trees are considered an important component of the built-up environment. This also means that there is an increasing demand for tree inventories. Laser mobile mapping systems provide an efficient and accurate way to sample the 3D road surrounding including notable roadside trees. Indeed, at, say, 50 km/h such systems collect point clouds consisting of half a million points per 100m. Method exists that extract tree parameters from relatively small patches of such data, but a remaining challenge is to operationally extract roadside tree parameters at regional level. For this purpose a workflow is presented as follows: The input point clouds are consecutively downsampled, retiled, classified, segmented into individual trees and upsampled to enable automated extraction of tree location, tree height, canopy diameter and trunk diameter at breast height (DBH). The workflow is implemented to work on a laser mobile mapping data set sampling 100 km of road in Sachsen, Germany and is tested on a stretch of road of 7km long. Along this road, the method detected 315 trees that were considered well detected and 56 clusters of tree points were no individual trees could be identified. Using voxels, the data volume could be reduced by about 97 % in a default scenario. Processing the results of this scenario took ~2500 seconds, corresponding to about 10 km/h, which is getting close to but is still below the acquisition rate which is estimated at 50 km/h.

  12. Dried Blood Spot Proteomics: Surface Extraction of Endogenous Proteins Coupled with Automated Sample Preparation and Mass Spectrometry Analysis

    NASA Astrophysics Data System (ADS)

    Martin, Nicholas J.; Bunch, Josephine; Cooper, Helen J.

    2013-08-01

    Dried blood spots offer many advantages as a sample format including ease and safety of transport and handling. To date, the majority of mass spectrometry analyses of dried blood spots have focused on small molecules or hemoglobin. However, dried blood spots are a potentially rich source of protein biomarkers, an area that has been overlooked. To address this issue, we have applied an untargeted bottom-up proteomics approach to the analysis of dried blood spots. We present an automated and integrated method for extraction of endogenous proteins from the surface of dried blood spots and sample preparation via trypsin digestion by use of the Advion Biosciences Triversa Nanomate robotic platform. Liquid chromatography tandem mass spectrometry of the resulting digests enabled identification of 120 proteins from a single dried blood spot. The proteins identified cross a concentration range of four orders of magnitude. The method is evaluated and the results discussed in terms of the proteins identified and their potential use as biomarkers in screening programs.

  13. Automated Urinalysis

    NASA Technical Reports Server (NTRS)

    1994-01-01

    Information from NASA Tech Briefs assisted DiaSys Corporation in the development of the R/S 2000 which automates urinalysis, eliminating most manual procedures. An automatic aspirator is inserted into a standard specimen tube, the "Sample" button is pressed, and within three seconds a consistent amount of urine sediment is transferred to a microscope. The instrument speeds up, standardizes, automates and makes urine analysis safer. Additional products based on the same technology are anticipated.

  14. Activities and summary statistics of radon-222 in stream- and ground-water samples, Owl Creek basin, north-central Wyoming, September 1991 through March 1992

    USGS Publications Warehouse

    Ogle, K.M.; Lee, R.W.

    1994-01-01

    Radon-222 activity was measured for 27 water samples from streams, an alluvial aquifer, bedrock aquifers, and a geothermal system, in and near the 510-square mile area of Owl Creek Basin, north- central Wyoming. Summary statistics of the radon- 222 activities are compiled. For 16 stream-water samples, the arithmetic mean radon-222 activity was 20 pCi/L (picocuries per liter), geometric mean activity was 7 pCi/L, harmonic mean activity was 2 pCi/L and median activity was 8 pCi/L. The standard deviation of the arithmetic mean is 29 pCi/L. The activities in the stream-water samples ranged from 0.4 to 97 pCi/L. The histogram of stream-water samples is left-skewed when compared to a normal distribution. For 11 ground-water samples, the arithmetic mean radon- 222 activity was 486 pCi/L, geometric mean activity was 280 pCi/L, harmonic mean activity was 130 pCi/L and median activity was 373 pCi/L. The standard deviation of the arithmetic mean is 500 pCi/L. The activity in the ground-water samples ranged from 25 to 1,704 pCi/L. The histogram of ground-water samples is left-skewed when compared to a normal distribution. (USGS)

  15. Adjustable virtual pore-size filter for automated sample preparation using acoustic radiation force

    SciTech Connect

    Jung, B; Fisher, K; Ness, K; Rose, K; Mariella, R

    2008-05-22

    We present a rapid and robust size-based separation method for high throughput microfluidic devices using acoustic radiation force. We developed a finite element modeling tool to predict the two-dimensional acoustic radiation force field perpendicular to the flow direction in microfluidic devices. Here we compare the results from this model with experimental parametric studies including variations of the PZT driving frequencies and voltages as well as various particle sizes and compressidensities. These experimental parametric studies also provide insight into the development of an adjustable 'virtual' pore-size filter as well as optimal operating conditions for various microparticle sizes. We demonstrated the separation of Saccharomyces cerevisiae and MS2 bacteriophage using acoustic focusing. The acoustic radiation force did not affect the MS2 viruses, and their concentration profile remained unchanged. With optimized design of our microfluidic flow system we were able to achieve yields of > 90% for the MS2 with > 80% of the S. cerevisiae being removed in this continuous-flow sample preparation device.

  16. Uncertainty Analysis Based on Sparse Grid Collocation and Quasi-Monte Carlo Sampling with Application in Groundwater Modeling

    NASA Astrophysics Data System (ADS)

    Zhang, G.; Lu, D.; Ye, M.; Gunzburger, M.

    2011-12-01

    Markov Chain Monte Carlo (MCMC) methods have been widely used in many fields of uncertainty analysis to estimate the posterior distributions of parameters and credible intervals of predictions in the Bayesian framework. However, in practice, MCMC may be computationally unaffordable due to slow convergence and the excessive number of forward model executions required, especially when the forward model is expensive to compute. Both disadvantages arise from the curse of dimensionality, i.e., the posterior distribution is usually a multivariate function of parameters. Recently, sparse grid method has been demonstrated to be an effective technique for coping with high-dimensional interpolation or integration problems. Thus, in order to accelerate the forward model and avoid the slow convergence of MCMC, we propose a new method for uncertainty analysis based on sparse grid interpolation and quasi-Monte Carlo sampling. First, we construct a polynomial approximation of the forward model in the parameter space by using the sparse grid interpolation. This approximation then defines an accurate surrogate posterior distribution that can be evaluated repeatedly at minimal computational cost. Second, instead of using MCMC, a quasi-Monte Carlo method is applied to draw samples in the parameter space. Then, the desired probability density function of each prediction is approximated by accumulating the posterior density values of all the samples according to the prediction values. Our method has the following advantages: (1) the polynomial approximation of the forward model on the sparse grid provides a very efficient evaluation of the surrogate posterior distribution; (2) the quasi-Monte Carlo method retains the same accuracy in approximating the PDF of predictions but avoids all disadvantages of MCMC. The proposed method is applied to a controlled numerical experiment of groundwater flow modeling. The results show that our method attains the same accuracy much more efficiently

  17. Analytical results from ground-water sampling using a direct-push technique at the Dover National Test Site, Dover Air Force Base, Delaware, June-July 2001

    USGS Publications Warehouse

    Guertal, William R.; Stewart, Marie; Barbaro, Jeffrey R.; McHale, Timthoy J.

    2004-01-01

    A joint study by the Dover National Test Site and the U.S. Geological Survey was conducted from June 27 through July 18, 2001 to determine the spatial distribution of the gasoline oxygenate additive methyl tert-butyl ether and selected water-quality constituents in the surficial aquifer underlying the Dover National Test Site at Dover Air Force Base, Delaware. The study was conducted to support a planned enhanced bio-remediation demonstration and to assist the Dover National Test Site in identifying possible locations for future methyl tert-butyl ether remediation demonstrations. This report presents the analytical results from ground-water samples collected during the direct-push ground-water sampling study. A direct-push drill rig was used to quickly collect 115 ground-water samples over a large area at varying depths. The ground-water samples and associated quality-control samples were analyzed for volatile organic compounds and methyl tert-butyl ether by the Dover National Test Site analytical laboratory. Volatile organic compounds were above the method reporting limits in 59 of the 115 ground-water samples. The concentrations ranged from below detection limits to maximum values of 12.4 micrograms per liter of cis-1,2-dichloroethene, 1.14 micrograms per liter of trichloroethene, 2.65 micrograms per liter of tetrachloroethene, 1,070 micrograms per liter of methyl tert-butyl ether, 4.36 micrograms per liter of benzene, and 1.8 micrograms per liter of toluene. Vinyl chloride, ethylbenzene, p,m-xylene, and o-xylene were not detected in any of the samples collected during this investigation. Methyl tert-butyl ether was detected in 47 of the 115 ground-water samples. The highest methyl tert-butyl ether concentrations were found in the surficial aquifer from -4.6 to 6.4 feet mean sea level, however, methyl tert-butyl ether was detected as deep as -9.5 feet mean sea level. Increased methane concentrations and decreased dissolved oxygen concentrations were found in

  18. Development testing of the chemical analysis automation polychlorinated biphenyl standard analysis method during surface soils sampling at the David Witherspoon 1630 site

    SciTech Connect

    Hunt, M.A.; Klatt, L.N.; Thompson, D.H.

    1998-02-01

    The Chemical Analysis Automation (CAA) project is developing standardized, software-driven, site-deployable robotic laboratory systems with the objective of lowering the per-sample analysis cost, decreasing sample turnaround time, and minimizing human exposure to hazardous and radioactive materials associated with DOE remediation projects. The first integrated system developed by the CAA project is designed to determine polychlorinated biphenyls (PCB) content in soil matrices. A demonstration and development testing of this system was conducted in conjuction with surface soil characterization activities at the David Witherspoon 1630 Site in Knoxville, Tennessee. The PCB system consists of five hardware standard laboratory modules (SLMs), one software SLM, the task sequence controller (TSC), and the human-computer interface (HCI). Four of the hardware SLMs included a four-channel Soxhlet extractor, a high-volume concentrator, a column cleanup, and a gas chromatograph. These SLMs performed the sample preparation and measurement steps within the total analysis protocol. The fifth hardware module was a robot that transports samples between the SLMs and the required consumable supplies to the SLMs. The software SLM is an automated data interpretation module that receives raw data from the gas chromatograph SLM and analyzes the data to yield the analyte information. The TSC is a software system that provides the scheduling, management of system resources, and the coordination of all SLM activities. The HCI is a graphical user interface that presents the automated laboratory to the analyst in terms of the analytical procedures and methods. Human control of the automated laboratory is accomplished via the HCI. Sample information required for processing by the automated laboratory is entered through the HCI. Information related to the sample and the system status is presented to the analyst via graphical icons.

  19. Re-Emergence of Under-Selected Stimuli, after the Extinction of Over-Selected Stimuli in an Automated Match to Samples Procedure

    ERIC Educational Resources Information Center

    Broomfield, Laura; McHugh, Louise; Reed, Phil

    2008-01-01

    Stimulus over-selectivity occurs when one of potentially many aspects of the environment comes to control behaviour. In two experiments, adults with no developmental disabilities, were trained and tested in an automated match to samples (MTS) paradigm. In Experiment 1, participants completed two conditions, in one of which the over-selected…

  20. Evaluation of automated direct sample introduction with comprehensive two-dimensional gas chromatography/time-of-flight mass spectrometry for the screening analysis of dioxins of fish oil

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An automated direct sample introduction technique coupled to comprehensive two-dimensional gas chromatography-time of flight mass spectrometry (DSI-GC×GC/TOF-MS) was applied for the development of a relatively fast and easy analytical screening method for 17 polychlorinated dibenzo-p-dioxins/dibenzo...

  1. Automated on-line liquid-liquid extraction system for temporal mass spectrometric analysis of dynamic samples.

    PubMed

    Hsieh, Kai-Ta; Liu, Pei-Han; Urban, Pawel L

    2015-09-24

    Most real samples cannot directly be infused to mass spectrometers because they could contaminate delicate parts of ion source and guides, or cause ion suppression. Conventional sample preparation procedures limit temporal resolution of analysis. We have developed an automated liquid-liquid extraction system that enables unsupervised repetitive treatment of dynamic samples and instantaneous analysis by mass spectrometry (MS). It incorporates inexpensive open-source microcontroller boards (Arduino and Netduino) to guide the extraction and analysis process. Duration of every extraction cycle is 17 min. The system enables monitoring of dynamic processes over many hours. The extracts are automatically transferred to the ion source incorporating a Venturi pump. Operation of the device has been characterized (repeatability, RSD = 15%, n = 20; concentration range for ibuprofen, 0.053-2.000 mM; LOD for ibuprofen, ∼0.005 mM; including extraction and detection). To exemplify its usefulness in real-world applications, we implemented this device in chemical profiling of pharmaceutical formulation dissolution process. Temporal dissolution profiles of commercial ibuprofen and acetaminophen tablets were recorded during 10 h. The extraction-MS datasets were fitted with exponential functions to characterize the rates of release of the main and auxiliary ingredients (e.g. ibuprofen, k = 0.43 ± 0.01 h(-1)). The electronic control unit of this system interacts with the operator via touch screen, internet, voice, and short text messages sent to the mobile phone, which is helpful when launching long-term (e.g. overnight) measurements. Due to these interactive features, the platform brings the concept of the Internet-of-Things (IoT) to the chemistry laboratory environment. PMID:26423626

  2. An automated serial Grinding, Imaging and Reconstruction Instrument (GIRI) for digital modeling of samples with weak density contrasts

    NASA Astrophysics Data System (ADS)

    Maloof, A. C.; Samuels, B.; Mehra, A.; Spatzier, A.

    2013-12-01

    We present the first results from the new Princeton University Grinder Lab dedicated to the digital reconstruction of hidden objects through serial grinding and imaging. The purpose of a destructive technique like serial grinding is to facilitate the discovery of embedded objects with weak density contrasts outside the sensitivity limits of X-ray CT-scanning devices (Feature segmentation and object reconstruction are based on color and textural contrasts in the stack of images rather than density). The device we have developed is a retrofit imaging station designed for a precision CNC surface. The instrument is capable of processing a sample 20x25x40 cm in size at 1 micron resolution in x, y and z axes. Directly coupled to the vertical axis of the grinder is an 80 megapixel medium format camera and specialty macro lens capable of imaging a 4x5 cm surface at 5 micron resolution in full 16 bit color. The system is automated such that after each surface grind, the sample is cleaned, travels to the opposite end of the bed from the grinder wheel, is photographed, and then moved back to the grinding position. This process establishes a comprehensive archive of the specimen that is used for digital reconstruction and quantitative analysis. For example, in one night, a 7 cm thick sample can be imaged completely at 20 micron horizontal and vertical resolution without human supervision. Some of the initial results we present here include new digital reconstructions of early animal fossils, 3D sedimentary bedforms, the size and shape distribution of chondrules in chondritic meteorites, and the porosity structure of carbonate cemented reservoir rocks.

  3. Automated Fast Screening Method for Cocaine Identification in Seized Drug Samples Using a Portable Fourier Transform Infrared (FT-IR) Instrument.

    PubMed

    Mainali, Dipak; Seelenbinder, John

    2016-05-01

    Quick and presumptive identification of seized drug samples without destroying evidence is necessary for law enforcement officials to control the trafficking and abuse of drugs. This work reports an automated screening method to detect the presence of cocaine in seized samples using portable Fourier transform infrared (FT-IR) spectrometers. The method is based on the identification of well-defined characteristic vibrational frequencies related to the functional group of the cocaine molecule and is fully automated through the use of an expert system. Traditionally, analysts look for key functional group bands in the infrared spectra and characterization of the molecules present is dependent on user interpretation. This implies the need for user expertise, especially in samples that likely are mixtures. As such, this approach is biased and also not suitable for non-experts. The method proposed in this work uses the well-established "center of gravity" peak picking mathematical algorithm and combines it with the conditional reporting feature in MicroLab software to provide an automated method that can be successfully employed by users with varied experience levels. The method reports the confidence level of cocaine present only when a certain number of cocaine related peaks are identified by the automated method. Unlike library search and chemometric methods that are dependent on the library database or the training set samples used to build the calibration model, the proposed method is relatively independent of adulterants and diluents present in the seized mixture. This automated method in combination with a portable FT-IR spectrometer provides law enforcement officials, criminal investigators, or forensic experts a quick field-based prescreening capability for the presence of cocaine in seized drug samples. PMID:27006022

  4. The installation of the Westbay multiport ground-water sampling system in well 699-43-42K near the 216-B-3 pond

    SciTech Connect

    Gilmore, T.J.

    1989-09-01

    In 1988 and 1989, Pacific Northwest Laboratory installed a multiport ground-water sampling system in well 699-43-42K drilled near the 216-B-3 Pond on the Hanford Site in southeastern Washington state. The multiport system will be used to evaluate methods for determining the vertical distribution of contaminants and hydraulic heads in ground water. This installation was in conjunction with a similar multiport installation near the 300 Area of the Hanford Site. Well 699-43-42K is adjacent to two Resource Conservation and Recovery Act (RCRA) ground-water monitoring wells, which will allow for a comparison of sampling intervals and head measurements between the multiport system and the RCRA monitoring wells. Eight sampling ports were installed in the upper unconfined aquifer by backfilling at depths of 161.1 ft, 174.1 ft, 187.1 ft, 201.17 ft, 217.2 ft, 230.2 ft, 243.2 ft, and 255.2 ft below land surface. However, because of damage to the casing during installation, only the top four ports should be used for pressure measurements and sampling until repairs occur. The locations of the sampling ports were determined by the hydrogeology of the area and the screened intervals of adjacent ground-water monitoring wells. 4 refs., 8 figs.

  5. Microwave-Assisted Sample Treatment in a Fully Automated Flow-Based Instrument: Oxidation of Reduced Technetium Species in the Analysis of Total Technetium-99 in Caustic Aged Nuclear Waste Samples

    SciTech Connect

    Egorov, Oleg B.; O'Hara, Matthew J.; Grate, Jay W.

    2004-07-15

    An automated flow-based instrument for microwave-assisted treatment of liquid samples has been developed and characterized. The instrument utilizes a flow-through reaction vessel design that facilitates the addition of multiple reagents during sample treatment, removal of the gaseous reaction products, and enables quantitative removal of liquids from the reaction vessel for carryover-free operations. Matrix modification and speciation control chemistries that are required for the radiochemical determination of total 99Tc in caustic aged nuclear waste samples have been investigated. A rapid and quantitative oxidation procedure using peroxydisulfate in acidic solution was developed to convert reduced technetium species to pertechnetate in samples with high content of reducing organics. The effectiveness of the automated sample treatment procedures has been validated in the radiochemical analysis of total 99Tc in caustic aged nuclear waste matrixes from the Hanford site.

  6. An 8-year record of gas geochemistry and isotopic composition of methane during baseline sampling at a groundwater observation well in Alberta (Canada)

    NASA Astrophysics Data System (ADS)

    Humez, P.; Mayer, B.; Nightingale, M.; Ing, J.; Becker, V.; Jones, Don; Lam, Vien

    2016-02-01

    Variability in baseline groundwater methane concentrations and isotopic compositions was assessed while comparing free and dissolved gas sampling approaches for a groundwater monitoring well in Alberta (Canada) over an 8-year period. Methane concentrations in dissolved gas samples ( n = 12) were on average 4,380 ± 2,452 μg/L, yielding a coefficient of variation (CV) >50 %. Methane concentrations in free gas samples ( n = 12) were on average 228,756 ± 62,498 ppm by volume, yielding a CV of 27 %. Quantification of combined sampling, sample handling and analytical uncertainties was assessed via triplicate sampling (CV of 19 % and 12 % for free gas and dissolved gas methane concentrations, respectively). Free and dissolved gas samples yielded comparable methane concentration patterns and there was evidence that sampling operations and pumping rates had a marked influence on the obtained methane concentrations in free gas. δ13CCH4 and δ2HCH4 values of methane were essentially constant (-78.6 ± 1.3 and -300 ± 3 ‰, respectively) throughout the observation period, suggesting that methane was derived from the same biogenic source irrespective of methane concentration variations. The isotopic composition of methane constitutes a robust and highly valuable baseline parameter and increasing δ13CCH4 and δ2HCH4 values during repeat sampling may indicate influx of thermogenic methane. Careful sampling and analytical procedures with identical and repeatable approaches are required in baseline-monitoring programs to generate methane concentration and isotope data for groundwater that can be reliably compared to repeat measurements once potential impact from oil and gas development, for example, may occur.

  7. Review Of Low-Flow Bladder Pump And High-Volume Air Piston Pump Groundwater Sampling Systems At Sandia National Laboratories, New Mexico

    SciTech Connect

    Collins, S. S.; Bailey, G. A.; Jackson, T. O.

    2003-02-25

    Since 1996, Sandia National Laboratories, New Mexico (SNL/NM) has run both a portable high-volume air-piston pump system and a dedicated, low-flow bladder pump system to collect groundwater samples. The groundwater contaminants of concern at SNL/NM are nitrate and the volatile organic compounds trichloroethylene (TCE) and tetrachloethene (PCE). Regulatory acceptance is more common for the high-volume air piston pump system, especially for programs like SNL/NM's, which are regulated under the Resource Conservation and Recovery Act (RCRA). This paper describes logistical and analytical results of the groundwater sampling systems used at SNL/NM. With two modifications to the off-the-shelf low-flow bladder pump, SNL/NM consistently operates the dedicated low-flow system at depths greater than 450 feet below ground surface. As such, the low-flow sampling system requires fewer personnel, less time and materials, and generates less purge and decontamination water than does the high-volume system. However, the bladder pump cannot work in wells with less than 4 feet of water. A review of turbidity and laboratory analytical results for TCE, PCE, and chromium (Cr) from six wells highlight the affect or lack of affects the sampling systems have on groundwater samples. In the PVC wells, turbidity typically remained < 5 nephelometric turbidity units (NTU) regardless of the sampling system. In the wells with a stainless steel screen, turbidity typically remained < 5 NTU only with the low-flow system. When the high-volume system was used, the turbidity and Cr concentration typically increased an order of magnitude. TCE concentrations at two wells did not appear to be sensitive to the sampling method used. However, PCE and TCE concentrations dropped an order of magnitude when the high-volume system was used at two other wells. This paper recommends that SNL/NM collaborate with other facilities with similar groundwater depths, continue to pursue regulatory approval for using

  8. Final work plan : targeted groundwater sampling and monitoring well installation for potential site reclassification at Barnes, Kansas.

    SciTech Connect

    LaFreniere, L. M.

    2006-07-11

    This ''Work Plan'' outlines the scope of work for a targeted groundwater sampling investigation and monitoring well installation at Barnes, Kansas. This activity is being conducted at the request of the Kansas Department of Health and Environment (KDHE), in accordance with the intergovernmental agreement between the KDHE and the Commodity Credit Corporation (CCC), an agency of the U.S. Department of Agriculture (USDA). Data resulting from the proposed work will be used to determine the hydraulic gradient near the former CCC/USDA facility, delineate the downgradient carbon tetrachloride plume, and determine additional monitoring requirements at Barnes. The overall goal is to establish criteria for monitoring leading to potential site reclassification. The proposed work will be performed on behalf of the CCC/USDA by the Environmental Science Division of Argonne National Laboratory. Argonne is a nonprofit, multidisciplinary research center operated by the University of Chicago for the U.S. Department of Energy (DOE). The Farm Service Agency of the USDA has entered into an interagency agreement with DOE, under which Argonne provides technical assistance with environmental site characterization and remediation at former CCC/USDA grain storage facilities. Argonne issued a ''Master Work Plan'' (Argonne 2002) to provide general guidance for all investigations at former CCC/USDA facilities in Kansas. The ''Master Work Plan'', approved by the KDHE, contains the materials common to investigations at all locations in Kansas. This document must be consulted for the complete details of plans for this work associated with the former CCC/USDA facility at Barnes.

  9. Influence of commonly used primer systems on automated ribosomal intergenic spacer analysis of bacterial communities in environmental samples.

    PubMed

    Purahong, Witoon; Stempfhuber, Barbara; Lentendu, Guillaume; Francioli, Davide; Reitz, Thomas; Buscot, François; Schloter, Michael; Krüger, Dirk

    2015-01-01

    Due to the high diversity of bacteria in many ecosystems, their slow generation times, specific but mostly unknown nutrient requirements and syntrophic interactions, isolation based approaches in microbial ecology mostly fail to describe microbial community structure. Thus, cultivation independent techniques, which rely on directly extracted nucleic acids from the environment, are a well-used alternative. For example, bacterial automated ribosomal intergenic spacer analysis (B-ARISA) is one of the widely used methods for fingerprinting bacterial communities after PCR-based amplification of selected regions of the operon coding for rRNA genes using community DNA. However, B-ARISA alone does not provide any taxonomic information and the results may be severely biased in relation to the primer set selection. Furthermore, amplified DNA stemming from mitochondrial or chloroplast templates might strongly bias the obtained fingerprints. In this study, we determined the applicability of three different B-ARISA primer sets to the study of bacterial communities. The results from in silico analysis harnessing publicly available sequence databases showed that all three primer sets tested are specific to bacteria but only two primers sets assure high bacterial taxa coverage (1406f/23Sr and ITSF/ITSReub). Considering the study of bacteria in a plant interface, the primer set ITSF/ITSReub was found to amplify (in silico) sequences of some important crop species such as Sorghum bicolor and Zea mays. Bacterial genera and plant species potentially amplified by different primer sets are given. These data were confirmed when DNA extracted from soil and plant samples were analyzed. The presented information could be useful when interpreting existing B-ARISA results and planning B-ARISA experiments, especially when plant DNA can be expected. PMID:25749323

  10. Chemical analyses of ground-water samples from the Rio Grande Valley in the vicinity of Albuquerque, New Mexico, October 1993 through January 1994

    USGS Publications Warehouse

    Wilkins, D.W.; Schlottmann, J.L.; Ferree, D.M.

    1996-01-01

    A study was conducted to investigate general ground-water- quality conditions and contaminant locations in the Rio Grande Valley in the vicinity of Albuquerque, New Mexico. Water samples from 36 observation wells in 12 well nests were analyzed. The well nests are located along three roads near the Rio Grande--two well nests near Paseo del Norte, five well nests near Monta?o Road, and five well nests near Rio Bravo Boulevard. The water samples were collected from October 19, 1993, through January 18, 1994. Water-quality types by major-ion composition were calcium bicarbonate (found in most samples), sodium sulfate, calcium sulfate, and calcium sulfate chloride. Nutrients were detected in all but one sample. Ammonia was detected in 34 samples, nitrite in 4 samples, and nitrate in 17 samples. Orthophosphate was detected in 31 samples. Organic carbon was detected in all samples collected. The trace elements arsenic and barium were detected in all samples and zinc in 31 samples. Fourteen samples contained detectable copper. Cadmium was detected in one sample, chromium in two samples, lead in four samples, and selenium in two samples. Mercury and silver were not detected.

  11. Trace analysis of heavy metals in groundwater samples by ion chromatography with post-column reaction and ultraviolet-visible detection.

    PubMed

    Santoyo, E; Santoyo-Gutiérrez, S; Verma, S P

    2000-07-01

    Groundwaters originating from local and regional aquifers surrounding ash deposits produced by a coal-fired power plant were collected. These water samples were chemically analyzed for quantifying their heavy metal composition at trace levels. A highly sensitive analytical technique based on ion chromatography with a UV-Vis detector and under isocratic eluent flow-rate conditions was used. In order to quantify the major heavy metals (Pb, Cu, Cd, Co, Zn and Ni), three ionic separation column systems were evaluated: (1) a cationic column (HPIC-CS2, Dionex) tested with two eluents (10 mM oxalic acid-7.5 mM citric acid; and 40 mM D-tartaric acid-12 mM citric acid); (2) an anionic column (HPIC-AS4, Dionex) evaluated with 25 mM oxalic acid as eluent: and (3) a bifunctional ion-exchange column (Ionpac CS5, Dionex) which was also tested with two eluents (6 mM pyridine, 2,6-dicarboxylic acid; and 50 mM oxalic acid/95 mM lithium hydroxide). The lowest detection limits achieved with the Ionpac CS5 column and the 50 mM oxalic acid-95 mM lithium hydroxide eluent enabled the heavy metal analysis in groundwater samples to be reliably performed. Details of this comparative study, including the ion chromatography procedure selected and its application to heavy metal analysis of groundwater samples, are presented in this work. PMID:10917442

  12. Application of automated serial blood sampling and dried blood spot technique with liquid chromatography-tandem mass spectrometry for pharmacokinetic studies in mice.

    PubMed

    Wong, Philip; Pham, Roger; Whitely, Carl; Soto, Marcus; Salyers, Kevin; James, Christopher; Bruenner, Bernd A

    2011-11-01

    The goal of this work was to obtain full pharmacokinetic profiles from individual mice with the use of an automated blood sampling system and dried blood spot (DBS) technique. AMG 517, a potent and selective vanilloid receptor (VR1) antagonist, was dosed to mice (n=3) intravenously and blood samples were collected using the automated blood sampling system with the "no blood waste" method. The collected blood samples were a mixture of 25 μL blood and 50 μL of heparinized saline solution. Two 15 μL aliquots were manually spotted onto a DBS card and dried at room temperature for at least 2h before being stored in zip bags with desiccant. The remaining samples (45 μL) were stored at -70°C until analysis. Both the DBS and the whole blood samples (diluted with saline (1:2, v/v)) were extracted and analyzed by liquid chromatography-tandem mass spectrometry. The overall extraction recovery of the analyte from the dried blood spots was determined to be about 90%. The pharmacokinetic parameters calculated using the whole blood or the DBS concentration data were comparable, and were obtained from only 3 mice, whereas conventional sampling and analysis would have required up to 27 mice to achieve the same result. The analyte was shown to be stable in the diluted whole blood (blood:saline 1:2) at room temperature for at least 4h and in the DBS for at least 34 days when stored at room temperature. These results indicated that the automated blood sampling system and DBS collection are promising techniques to obtain full pharmacokinetic profiles from individual mice and reduce the use of animals. PMID:21784595

  13. Compilation and review of 87Sr/86Sr and stable isotopes from groundwater, calcite fracture fillings, mineral, and whole-rock sampling at Äspö, Sweden.

    PubMed

    Wallin, Bill; Peterman, Zell

    2015-04-01

    Integrated isotopic and hydrochemical studies of groundwater at Äspö, Sweden, support mixing models involving deep saline water, low-solute infiltration, and Baltic Sea water. Carbon, oxygen, and strontium isotope analyses of calcite fracture fillings indicate that paleohydrologic conditions were different than those of today in terms of the isotopic composition of water flowing through fractures. Sr isotopes of whole-rock and mineral (plagioclase, microcline, biotite, and epidote) samples are used to assess the effects of water-rock interaction. Biotite is a major reactant in the early stages of water-rock interaction. Strontium isotope systematics of groundwater from deep in the Hard Rock Laboratory, and underground research facility, and from low conductivity zones revealed a first order mixing line defined by a high-chloride saline component with 66 mg/L Sr and an ancient sea water component with approximately 4.5 mg/L. Dilution with low salinity recharge has produced groundwater with variable Sr contents and 87Sr/86Sr values between 0.7186 and 0.7160. Differences between Äspö and Laxemar groundwater are shown by trends in Sr concentrations plotted against 87Sr/86Sr. The Äspö trend shows increasing 87Sr/86Sr values with increasing concentrations of Sr, whereas the Laxemar groundwater trend shows little variability in 87Sr/86Sr with increasing Sr concentrations. These trends are controlled by the differences in 87Sr/86Sr composition of the saline end members in the two areas. PMID:24571642

  14. Automated Liquid Microjunction Surface Sampling-HPLC-MS/MS Analysis of Drugs and Metabolites in Whole-Body Thin Tissue Sections

    SciTech Connect

    Kertesz, Vilmos; Van Berkel, Gary J

    2013-01-01

    A fully automated liquid extraction-based surface sampling system utilizing a commercially available autosampler coupled to high performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS) detection is reported. Discrete spots selected for droplet-based sampling and automated sample queue generation for both the autosampler and MS were enabled by using in-house developed software. In addition, co-registration of spatially resolved sampling position and HPLC-MS information to generate heatmaps of compounds monitored for subsequent data analysis was also available in the software. The system was evaluated with whole-body thin tissue sections from propranolol dosed rat. The hands-free operation of the system was demonstrated by creating heatmaps of the parent drug and its hydroxypropranolol glucuronide metabolites with 1 mm resolution in the areas of interest. The sample throughput was approximately 5 min/sample defined by the time needed for chromatographic separation. The spatial distributions of both the drug and its metabolites were consistent with previous studies employing other liquid extraction-based surface sampling methodologies.

  15. Sampling history and 2009--2010 results for pesticides and inorganic constituents monitored by the Lake Wales Ridge Groundwater Network, central Florida

    USGS Publications Warehouse

    Choquette, Anne F.; Freiwald, R. Scott; Kraft, Carol L.

    2012-01-01

    7 percent, respectively, of the 2009–2010 samples. A comparison of agrichemical land-use effects on groundwater quality, determined on the basis of samples from LWRM Network wells in citrus and in non-citrus land-use areas, indicated significantly higher (p<0.05) concentrations of inorganic constituents in samples from citrus land-use areas compared to samples from non-citrus areas. These inorganic constituents include calcium, magnesium, chloride, sulfate, potassium, nitrate, aluminum, manganese, strontium, and total nitrogen, and also specific conductance, an indicator of total dissolved solutes in water. In addition to land use, including irrigation, site differences such as soils and groundwater reduction/oxidation conditions might have contributed to the differences in some of these constituents. Pesticide detections were primarily restricted to the citrus land-use wells, where 22 of 23 wells yielded pesticide detections, with a median of four detected pesticide compounds per well. For the non-citrus land-use wells, typically surrounded by mixed land use including developed and undeveloped land, one of the eight sampled wells yielded pesticide detections consisting of norflurazon and its degradate, and the source(s) of these detections might have been active or recently active citrus orchards in the vicinity of this well. Results from the LWRM Network during the 1989 through May 2010 period have provided early warning of chemicals prone to leaching, guidance for developing or modifying chemical usage practices to minimize impacts to groundwater, and a mechanism for prioritizing State sampling of domestic wells to assure safe drinking-water supplies. Given the typically long time period (years to tens of years or longer) required to remove chemical contamination once it enters the groundwater system, groundwater monitoring is important to protect drinking-water sources as well as the numerous lakes in this region, which are closely connected with the surficial

  16. AN UNEXPECTED TEMPORAL PATTERN OF COLIPHAGE ISOLATION IN GROUNDWATERS SAMPLED FROM WELLS AT VARIED DISTANCES FROM RECLAIMED WATER RECHARGE SITES

    EPA Science Inventory

    Potable and monitoring wells located in close proximity to a large groundwater recharge project which utilizes a blend of surface water and reclaimed wastewater for recharge were tested for coliphage over a period of 6 months to assess the potential for virus migration. During th...

  17. Ground-Water Data-Collection Protocols and Procedures for the National Water-Quality Assessment Program: Collection and Documentation of Water-Quality Samples and Related Data

    USGS Publications Warehouse

    Koterba, Michael T.; Wilde, Franceska D.; Lapham, Wayne W.

    1995-01-01

    Protocols for ground-water sampling are described in a report written in 1989 as part of the pilot program for the National Water-Quality Assessment (NAWQA) Program of the U.S. Geological Survey (USGS). These protocols have been reviewed and revised to address the needs of the full-scale implementation of the NAWQA Program that began in 1991. This report, which is a collaborative effort between the NAWQA Program and the USGS Office of Water Quality, is the result of that review and revision. This report describes protocols and recommended procedures for the collection of water-quality samples and related data from wells for the NAWQA Program. Protocols and recommended procedures discussed include (1) equipment setup and other preparations for data collection; (2) well purging and field measurements; (3) collecting and processing ground-water-quality samples; (4) equipment decontamination; (5) quality-control sampling; and (6) sample handling and shipping.

  18. AUTOMATED ANALYSIS OF AQUEOUS SAMPLES CONTAINING PESTICIDES, ACIDIC/BASIC/NEUTRAL SEMIVOLATILES AND VOLATILE ORGANIC COMPOUNDS BY SOLID PHASE EXTRACTION COUPLED IN-LINE TO LARGE VOLUME INJECTION GC/MS

    EPA Science Inventory

    Data is presented on the development of a new automated system combining solid phase extraction (SPE) with GC/MS spectrometry for the single-run analysis of water samples containing a broad range of organic compounds. The system uses commercially available automated in-line 10-m...

  19. Results of the Analyses for 1,4-Dioxane of Groundwater Samples Collected in the Tucson Airport Remediation Project Area, South-Central Arizona, 2006-2009

    USGS Publications Warehouse

    Tillman, Fred D

    2009-01-01

    Extensive groundwater contamination resulting from industrial activities led to the listing of the Tucson International Airport Area (TIAA) as a Superfund Site by the U.S. Environmental Protection Agency (USEPA) in 1983. Early investigations revealed elevated levels of volatile organic compounds (VOCs), including the chlorinated solvents trichloroethylene and perchloroethylene, in wells in the area. Several responsible parties were identified, and cleanup activities were initiated in the late 1980s using technology designed for removal of VOCs. In 2002, the compound 1,4-dioxane was discovered in wells in the TIAA area. Since then, 1,4-dioxane has been detected throughout the TIAA area at levels exceeding the USEPA Drinking Water Health Advisory value of 3 micrograms per liter (ug/L; U.S. Environmental Protection Agency, 2006). Chemical properties of 1,4-dioxane make it relatively unaffected by the treatment technologies employed in the TIAA area. In 2006, the U.S. Geological Survey (USGS) Arizona Water Science Center, in cooperation with the U.S. Air Force Center for Engineering and the Environment, began an investigation into the extent of groundwater contamination by 1,4-dioxane in the area. Five rounds of groundwater sampling in the TIAA area have been completed by the USGS since that time, yielding a total of 210 samples. Results from these analyses indicate less than reportable concentrations of 1,4-dioxane in 30 percent of the samples, with 46 percent of the samples having concentrations at or above the USEPA Drinking Water Health Advisory level.

  20. Automated extraction of 11-nor-delta9-tetrahydrocannabinol carboxylic acid from urine samples using the ASPEC XL solid-phase extraction system.

    PubMed

    Langen, M C; de Bijl, G A; Egberts, A C

    2000-09-01

    The analysis of 11-nor-delta9-tetrahydrocannabinol-carboxylic acid (THCCOOH, the major metabolite of cannabis) in urine with gas chromatography and mass spectrometry (GC-MS) and solid-phase extraction (SPE) sample preparation is well documented. Automated SPE sample preparation of THCCOOH in urine, although potentially advantageous, is to our knowledge poorly investigated. The objective of the present study was to develop and validate an automated SPE sample-preparation step using ASPEC XL suited for GC-MS confirmation analysis of THCCOOH in urine drug control. The recoveries showed that it was not possible to transfer the protocol for the manual SPE procedure with the vacuum manifold to the ASPEC XL without loss of recovery. Making the sample more lipophilic by adding 1 mL 2-propanol after hydrolysis to the urine sample in order to overcome the problem of surface adsorption of THCCOOH led to an extraction efficiency (77%) comparable to that reached with the vacuum manifold (84%). The reproducibility of the automated SPE procedure was better (coefficient of variation 5%) than that of the manual procedure (coefficient of variation 12%). The limit of detection was 1 ng/mL, and the limit of quantitation was 4 ng/mL. Precision at the 12.5-ng/mL level was as follows: mean, 12.4 and coefficient of variation, 3.0%. Potential carryover was evaluated, but a carryover effect could not be detected. It was concluded that the proposed method is suited for GC-MS confirmation urinalysis of THCCOOH for prisons and detoxification centers. PMID:10999349

  1. Summary of Inorganic Compositional Data for Groundwater, Soil-Water, and Surface-Water Samples at the Headgate Draw Subsurface Drip Irrigation Site

    SciTech Connect

    Geboy, Nicholas J.; Engle, Mark A.; Schroeder, Karl T.; Zupanic, John W.

    2007-01-01

    As part of a 5-year project on the impact of subsurface drip irrigation (SDI) application of coalbed-methane (CBM) produced waters, water samples were collected from the Headgate Draw SDI site in the Powder River Basin, Wyoming, USA. This research is part of a larger study to understand short- and long-term impacts on both soil and water quality from the beneficial use of CBM waters to grow forage crops through use of SDI. This document provides a summary of the context, sampling methodology, and quality assurance and quality control documentation of samples collected prior to and over the first year of SDI operation at the site (May 2008-October 2009). This report contains an associated database containing inorganic compositional data, water-quality criteria parameters, and calculated geochemical parameters for samples of groundwater, soil water, surface water, treated CBM waters, and as-received CBM waters collected at the Headgate Draw SDI site.

  2. Summary of inorganic compositional data for groundwater, soil-water, and surface-water samples collected at the Headgate Draw subsurface drip irrigation site, Johnson County, Wyoming

    USGS Publications Warehouse

    Geboy, Nicholas J.; Engle, Mark A.; Schroeder, Karl T.; Zupancic, John W.

    2011-01-01

    As part of a 5-year project on the impact of subsurface drip irrigation (SDI) application of coalbed-methane (CBM) produced waters, water samples were collected from the Headgate Draw SDI site in the Powder River Basin, Wyoming, USA. This research is part of a larger study to understand short- and long-term impacts on both soil and water quality from the beneficial use of CBM waters to grow forage crops through use of SDI. This document provides a summary of the context, sampling methodology, and quality assurance and quality control documentation of samples collected prior to and over the first year of SDI operation at the site (May 2008-October 2009). This report contains an associated database containing inorganic compositional data, water-quality criteria parameters, and calculated geochemical parameters for samples of groundwater, soil water, surface water, treated CBM waters, and as-received CBM waters collected at the Headgate Draw SDI site.

  3. A simulation-based approach for designing effective field-sampling programs to evaluate contamination risk of groundwater supplies

    USGS Publications Warehouse

    Nordqvist, R.; Voss, C.I.

    1996-01-01

    An approach to model discrimination and network design for evaluation of groundwater contamination risk is proposed and demonstrated by application to a site in a glaciofluvial aquifer in Sweden. The approach consists of first hypothesizing alternative conceptual models of hydrogeology at the site on the basis of both quantitative data and qualitative information. The conceptual models are then expressed as two-dimensional numerical models of groundwater flow and solute transport, and model attributes controlling risk to the water supply are determined by simulation. Model predictions of response to a specific field test are made with each model that affects risk. Regions for effective measurement networks are then identified. Effective networks are those that capture sufficient information to determine which of the hypothesized models best describes the system with a minimum of measurement points. For the example site in Sweden, the network is designed such that important system parameters may be accurately estimated at the same time as model discrimination is carried out. The site in Vansbro, Sweden, consists of a water-supply well in an esker separated (by 300m) from a wood preservation and treatment area on the esker flank by only a narrow inlet of a bordering stream. Application of the above-described risk analysis shows that, of all the hydrologic controls and parameters in the groundwater system, the only factor that controls the potential migration of wood-treatment contaminants to the well is whether the inlet's bed is pervious, creating a hydraulic barrier to lateral contaminant transport. Furthermore, the analysis localizes an area near the end of the inlet wherein the most effective measurements of drawdown would be made to discriminate between a permeable and impermeable bed. The location of this optimal area is not obvious prior to application of the above methodology.

  4. Method and apparatus for automated processing and aliquoting of whole blood samples for analysis in a centrifugal fast analyzer

    DOEpatents

    Burtis, Carl A.; Johnson, Wayne F.; Walker, William A.

    1988-01-01

    A rotor and disc assembly for use in a centrifugal fast analyzer. The assembly is designed to process multiple samples of whole blood followed by aliquoting of the resultant serum into precisely measured samples for subsequent chemical analysis. The assembly requires minimal operator involvement with no mechanical pipetting. The system comprises (1) a whole blood sample disc, (2) a serum sample disc, (3) a sample preparation rotor, and (4) an analytical rotor. The blood sample disc and serum sample disc are designed with a plurality of precision bore capillary tubes arranged in a spoked array. Samples of blood are loaded into the blood sample disc in capillary tubes filled by capillary action and centrifugally discharged into cavities of the sample preparation rotor where separation of serum and solids is accomplished. The serum is loaded into the capillaries of the serum sample disc by capillary action and subsequently centrifugally expelled into cuvettes of the analytical rotor for analysis by conventional methods.

  5. Method and apparatus for automated processing and aliquoting of whole blood samples for analysis in a centrifugal fast analyzer

    DOEpatents

    Burtis, C.A.; Johnson, W.F.; Walker, W.A.

    1985-08-05

    A rotor and disc assembly for use in a centrifugal fast analyzer. The assembly is designed to process multiple samples of whole blood followed by aliquoting of the resultant serum into precisely measured samples for subsequent chemical analysis. The assembly requires minimal operator involvement with no mechanical pipetting. The system comprises: (1) a whole blood sample disc; (2) a serum sample disc; (3) a sample preparation rotor; and (4) an analytical rotor. The blood sample disc and serum sample disc are designed with a plurality of precision bore capillary tubes arranged in a spoked array. Samples of blood are loaded into the blood sample disc by capillary action and centrifugally discharged into cavities of the sample preparation rotor where separation of serum and solids is accomplished. The serum is loaded into the capillaries of the serum sample disc by capillary action and subsequently centrifugally expelled into cuvettes of the analyticaly rotor for conventional methods. 5 figs.

  6. An automated system to mount cryo-cooled protein crystals on a synchrotron beam line, using compact sample cassettes and a small-scale robot

    PubMed Central

    Cohen, Aina E.; Ellis, Paul J.; Miller, Mitchell D.; Deacon, Ashley M.; Phizackerley, R. Paul

    2014-01-01

    An automated system for mounting and dismounting pre-frozen crystals has been implemented at the Stanford Synchrotron Radiation Laboratory (SSRL). It is based on a small industrial robot and compact cylindrical cassettes, each holding up to 96 crystals mounted on Hampton Research sample pins. For easy shipping and storage, the cassette fits inside several popular dry-shippers and long-term storage Dewars. A dispensing Dewar holds up to three cassettes in liquid nitrogen adjacent to the beam line goniometer. The robot uses a permanent magnet tool to extract samples from, and insert samples into a cassette, and a cryo-tong tool to transfer them to and from the beam line goniometer. The system is simple, with few moving parts, reliable in operation and convenient to use. PMID:24899734

  7. Groundwater level monitoring sampling and analysis plan for the environmental monitoring plan at waste area grouping 6, Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    1995-09-01

    This document is the Groundwater Level Monitoring Sampling and Analysis Plan (SAP) for Waste Area Grouping (WAG) 6 at Oak Ridge National Laboratory (ORNL). Note that this document is referred to as a SAP even though no sampling and analysis will be conducted. The term SAP is used for consistency. The procedures described herein are part of the Environmental Monitoring Plan (EMP) for WAG 6, which also includes monitoring tasks for seeps and springs, groundwater quality, surface water, and meteorological parameters. Separate SAPs are being issued concurrently to describe each of these monitoring programs. This SAP has been written for the use of the field personnel responsible for implementation of the EMP, with the intent that the field personnel will be able to take these documents to the field and quickly find the appropriate steps required to complete a specific task. In many cases, Field Operations Procedures (FOPs) will define the steps required for an activity. The FOPs for the EMP are referenced and briefly described in the relevant sections of the SAPs, and are contained within the FOP Manual. Both these documents (the SAP and the FOP Manual) will be available to personnel in the field.

  8. Homogeneous sample preparation for automated high throughput analysis with matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry.

    PubMed

    Onnerfjord, P; Ekström, S; Bergquist, J; Nilsson, J; Laurell, T; Marko-Varga, G

    1999-01-01

    This work presents a simple method for obtaining homogeneous sample surfaces in matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOFMS) for the automated analysis of peptides and proteins. The sample preparation method is based on applying the sample/matrix mixture onto a pre-deposited highly diluted matrix spot. The pre-deposited crystals act as seeds for the new sample containing crystals which become much smaller in size and more evenly distributed than with conventional methods. This 'seed-layer' method was developed, optimised and compared with the dried-droplet method using peptides and proteins in the 1000-20,000 Da range. The seed-layer method increases the surface homogeneity, spot to spot reproducibility and sample washability as compared with the commonly used dried-droplet method. This methodology is applicable to alpha-cyanohydroxycinnamic acid, sinapinic acid and ferulic acid, which all form homogeneous crystal surfaces. Within-spot variation and between-spot variation was investigated using statistics at a 95% confidence level (n = 36). The statistical values were generated from more than 5000 data points collected from 500 spectra. More than 90% of the sample locations results in high intensity spectra with relatively low standard deviations (RSDs). Typically obtained data showed an RSD of 19-35% within a sample spot as well as in-between spots for proteins, and an RSD of < or = 50% for peptides. Linear calibration curves were obtained within one order of magnitude using internal calibration with a point-RSD of 3% (n = 10). The sample homogeneity allows mass spectra (average of 16 laser shots) to be obtained on each individual sample within 15 sec, whereby a 100 spot target plate can be run in 25 min. High density target plates using the seed-layer method were prepared by spotting approximately 100 picoliter droplets onto the target, resulting in sample spots < or = 500 microns in diameter using a flow

  9. Automated DNA Sequencing System

    SciTech Connect

    Armstrong, G.A.; Ekkebus, C.P.; Hauser, L.J.; Kress, R.L.; Mural, R.J.

    1999-04-25

    Oak Ridge National Laboratory (ORNL) is developing a core DNA sequencing facility to support biological research endeavors at ORNL and to conduct basic sequencing automation research. This facility is novel because its development is based on existing standard biology laboratory equipment; thus, the development process is of interest to the many small laboratories trying to use automation to control costs and increase throughput. Before automation, biology Laboratory personnel purified DNA, completed cycle sequencing, and prepared 96-well sample plates with commercially available hardware designed specifically for each step in the process. Following purification and thermal cycling, an automated sequencing machine was used for the sequencing. A technician handled all movement of the 96-well sample plates between machines. To automate the process, ORNL is adding a CRS Robotics A- 465 arm, ABI 377 sequencing machine, automated centrifuge, automated refrigerator, and possibly an automated SpeedVac. The entire system will be integrated with one central controller that will direct each machine and the robot. The goal of this system is to completely automate the sequencing procedure from bacterial cell samples through ready-to-be-sequenced DNA and ultimately to completed sequence. The system will be flexible and will accommodate different chemistries than existing automated sequencing lines. The system will be expanded in the future to include colony picking and/or actual sequencing. This discrete event, DNA sequencing system will demonstrate that smaller sequencing labs can achieve cost-effective the laboratory grow.

  10. Analytical results, database management and quality assurance for analysis of soil and groundwater samples collected by cone penetrometer from the F and H Area seepage basins

    SciTech Connect

    Boltz, D.R.; Johnson, W.H.; Serkiz, S.M.

    1994-10-01

    The Quantification of Soil Source Terms and Determination of the Geochemistry Controlling Distribution Coefficients (K{sub d} values) of Contaminants at the F- and H-Area Seepage Basins (FHSB) study was designed to generate site-specific contaminant transport factors for contaminated groundwater downgradient of the Basins. The experimental approach employed in this study was to collect soil and its associated porewater from contaminated areas downgradient of the FHSB. Samples were collected over a wide range of geochemical conditions (e.g., pH, conductivity, and contaminant concentration) and were used to describe the partitioning of contaminants between the aqueous phase and soil surfaces at the site. The partitioning behavior may be used to develop site-specific transport factors. This report summarizes the analytical procedures and results for both soil and porewater samples collected as part of this study and the database management of these data.

  11. Global sampling to assess the value of diverse observations in conditioning a real-world groundwater flow and transport model

    NASA Astrophysics Data System (ADS)

    Delsman, Joost R.; Winters, Pieter; Vandenbohede, Alexander; Oude Essink, Gualbert H. P.; Lebbe, Luc

    2016-03-01

    The use of additional types of observational data has often been suggested to alleviate the ill-posedness inherent to parameter estimation of groundwater models and constrain model uncertainty. Disinformation in observational data caused by errors in either the observations or the chosen model structure may, however, confound the value of adding observational data in model conditioning. This paper uses the global generalized likelihood uncertainty estimation methodology to investigate the value of different observational data types (heads, fluxes, salinity, and temperature) in conditioning a groundwater flow and transport model of an extensively monitored field site in the Netherlands. We compared model conditioning using the real observations to a synthetic model experiment, to demonstrate the possible influence of disinformation in observational data in model conditioning. Results showed that the value of different conditioning targets was less evident when conditioning to real measurements than in a measurement error-only synthetic model experiment. While in the synthetic experiment, all conditioning targets clearly improved model outcomes, minor improvements or even worsening of model outcomes was observed for the real measurements. This result was caused by errors in both the model structure and the observations, resulting in disinformation in the observational data. The observed impact of disinformation in the observational data reiterates the necessity of thorough data validation and the need for accounting for both model structural and observational errors in model conditioning. It further suggests caution when translating results of synthetic modeling examples to real-world applications. Still, applying diverse conditioning data types was found to be essential to constrain uncertainty, especially in the transport of solutes in the model.

  12. Determination of benzotrifluoride derivative compounds in groundwater.

    PubMed

    Lava, Roberto; Aimo, Emilia; Menegus, Luciana; Pojana, Giulio; Marcomini, Antonio

    2013-12-01

    Two simple analytical methods for the simultaneous determination and quantification of benzotrifluoride and eight chlorinated, amino and nitro benzotrifluoride derivatives in groundwater are proposed. Benzotrifluoride, 4-chlorobenzotrifluoride, 2,4-dichlorobenzotrifluoride and 3,4-dichlorobenzotrifluoride, were extracted by Purge-and-Trap on the basis of their volatile properties, while 3-aminobenzotrifluoride, 4-nitrobenzotrifluoride, 3-amino-4-chlorobenzotrifluoride, 3-nitro-4-chlorobenzotrifluoride and 4-chloro-3,5-dinitrobenzotrifluoride extractions were done with an automated SPE system. The analytical separations and detections were performed with two different GC systems, both equipped with single quadrupole mass spectrometer as detector. The LOD ranges for the two methods were 0.002-0.005 μg L(-1) and 0.01-0.07 μg L(-1), respectively. Both extraction methods were developed using spiked Milli-Q water and were then demonstrated with groundwater samples collected during autumn 2008. The areas of groundwater collection were polluted due to an episode of improper industrial soil disposal and consequent leakage of aliphatic and aromatic, fluorinated chemicals into the groundwater. This work eventually revealed the presence of several benzotrifluoride compounds most of them, like dichloro- and amino-derivatives, never been reported as environmental contaminants. PMID:24267073

  13. A timer inventory based upon manual and automated analysis of ERTS-1 and supporting aircraft data using multistage probability sampling. [Plumas National Forest, California

    NASA Technical Reports Server (NTRS)

    Nichols, J. D.; Gialdini, M.; Jaakkola, S.

    1974-01-01

    A quasi-operational study demonstrating that a timber inventory based on manual and automated analysis of ERTS-1, supporting aircraft data and ground data was made using multistage sampling techniques. The inventory proved to be a timely, cost effective alternative to conventional timber inventory techniques. The timber volume on the Quincy Ranger District of the Plumas National Forest was estimated to be 2.44 billion board feet with a sampling error of 8.2 percent. Costs per acre for the inventory procedure at 1.1 cent/acre compared favorably with the costs of a conventional inventory at 25 cents/acre. A point-by-point comparison of CALSCAN-classified ERTS data with human-interpreted low altitude photo plots indicated no significant differences in the overall classification accuracies.

  14. High-throughput, Automated Extraction of DNA and RNA from Clinical Samples using TruTip Technology on Common Liquid Handling Robots

    PubMed Central

    Holmberg, Rebecca C.; Gindlesperger, Alissa; Stokes, Tinsley; Brady, Dane; Thakore, Nitu; Belgrader, Philip; Cooney, Christopher G.; Chandler, Darrell P.

    2013-01-01

    TruTip is a simple nucleic acid extraction technology whereby a porous, monolithic binding matrix is inserted into a pipette tip. The geometry of the monolith can be adapted for specific pipette tips ranging in volume from 1.0 to 5.0 ml. The large porosity of the monolith enables viscous or complex samples to readily pass through it with minimal fluidic backpressure. Bi-directional flow maximizes residence time between the monolith and sample, and enables large sample volumes to be processed within a single TruTip. The fundamental steps, irrespective of sample volume or TruTip geometry, include cell lysis, nucleic acid binding to the inner pores of the TruTip monolith, washing away unbound sample components and lysis buffers, and eluting purified and concentrated nucleic acids into an appropriate buffer. The attributes and adaptability of TruTip are demonstrated in three automated clinical sample processing protocols using an Eppendorf epMotion 5070, Hamilton STAR and STARplus liquid handling robots, including RNA isolation from nasopharyngeal aspirate, genomic DNA isolation from whole blood, and fetal DNA extraction and enrichment from large volumes of maternal plasma (respectively). PMID:23793016

  15. Influence of sample preparation and reliability of automated numerical refocusing in stain-free analysis of dissected tissues with quantitative phase digital holographic microscopy

    NASA Astrophysics Data System (ADS)

    Kemper, Björn; Lenz, Philipp; Bettenworth, Dominik; Krausewitz, Philipp; Domagk, Dirk; Ketelhut, Steffi

    2015-05-01

    Digital holographic microscopy (DHM) has been demonstrated to be a versatile tool for high resolution non-destructive quantitative phase imaging of surfaces and multi-modal minimally-invasive monitoring of living cell cultures in-vitro. DHM provides quantitative monitoring of physiological processes through functional imaging and structural analysis which, for example, gives new insight into signalling of cellular water permeability and cell morphology changes due to toxins and infections. Also the analysis of dissected tissues quantitative DHM phase contrast prospects application fields by stain-free imaging and the quantification of tissue density changes. We show that DHM allows imaging of different tissue layers with high contrast in unstained tissue sections. As the investigation of fixed samples represents a very important application field in pathology, we also analyzed the influence of the sample preparation. The retrieved data demonstrate that the quality of quantitative DHM phase images of dissected tissues depends strongly on the fixing method and common staining agents. As in DHM the reconstruction is performed numerically, multi-focus imaging is achieved from a single digital hologram. Thus, we evaluated the automated refocussing feature of DHM for application on different types of dissected tissues and revealed that on moderately stained samples highly reproducible holographic autofocussing can be achieved. Finally, it is demonstrated that alterations of the spatial refractive index distribution in murine and human tissue samples represent a reliable absolute parameter that is related of different degrees of inflammation in experimental colitis and Crohn's disease. This paves the way towards the usage of DHM in digital pathology for automated histological examinations and further studies to elucidate the translational potential of quantitative phase microscopy for the clinical management of patients, e.g., with inflammatory bowel disease.

  16. Groundwater level monitoring sampling and analysis plan for environmental monitoring in Waste Area Grouping 6 at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Not Available

    1994-04-01

    This Sampling and Analysis Plan addresses groundwater level monitoring activities that will be conducted in support of the Environmental Monitoring Plan for Waste Area Grouping (WAG) 6. WAG 6 is a shallow-burial land disposal facility for low-level radioactive waste at the Oak Ridge National Laboratory, a research facility owned by the US Department of Energy and managed by Martin Marietta Energy Systems, Inc. Groundwater level monitoring will be conducted at 129 sites within the WAG. All of the sites will be manually monitored on a semiannual basis. Forty-five of the 128 wells, plus one site in White Oak Lake, will also be equipped with automatic water level monitoring equipment. The 46 sites are divided into three groups. One group will be equipped for continuous monitoring of water level, conductivity, and temperature. The other two groups will be equipped for continuous monitoring of water level only. The equipment will be rotated between the two groups. The data collected from the water level monitoring will be used to support determination of the contaminant flux at WAG 6.

  17. High-performance liquid chromatographic determination of ochratoxin A in artificially contaminated cocoa beans using automated sample clean-up.

    PubMed

    Hurst, W J; Martin, R A

    1998-06-12

    A HPLC method is described for the analysis of ochratoxin A at low-ppb levels in samples of artificially contaminated cocoa beans. The samples are extracted in a mixture of methanol-water containing ascorbic acid, adjusted to pH and evaporated to dryness. Samples in this state are then placed onto a Benchmate sample preparation workstation where C18 solid-phase extraction operations are performed. The resulting materials are evaporated to dryness and analyzed by reversed-phase HPLC with fluorescence detection. The method was evaluated for accuracy and precision with R.S.D.s for multiple injections of sample and standard calculated to 1.1% and 2.5% for sample and standard, respectively. Recoveries of ochratoxin A added to cocoa beans ranged from 87-106% over the range of the assay. PMID:9691293

  18. Determination of eight fluoroquinolones in groundwater samples with ultrasound-assisted ionic liquid dispersive liquid-liquid microextraction prior to high-performance liquid chromatography and fluorescence detection.

    PubMed

    Vázquez, M M Parrilla; Vázquez, P Parrilla; Galera, M Martínez; García, M D Gil

    2012-10-20

    An ultrasound-assisted ionic liquid dispersive liquid-liquid microextraction (US-IL-DLLME) procedure was developed for the extraction of eight fluoroquinolones (marbofloxacin, norfloxacin, ciprofloxacin, lomefloxacin, danofloxacin, enrofloxacin, oxolinic acid and nalidixic acid) in groundwater, using high-performance liquid chromatography with fluorescence detection (HPLC-FD). The ultrasound-assisted process was applied to accelerate the formation of the fine cloudy solution using a small volume of disperser solvent (0.4 mL of methanol), which increased the extraction efficiency and reduced the equilibrium time. For the DLLME procedure, the IL 1-octyl-3-methylimidazolium hexafluorophosphate ([C(8)MIM] [PF(6)]) and methanol (MeOH) were used as extraction and disperser solvent, respectively. By comparing [C(8)MIM] [PF(6)] with 1-hexyl-3-methylimidazolium hexafluorophosphate ([C(6)MIM] [PF(6)]) and 1-butyl-3-methylimidazolium hexafluorophosphate ([C(4)MIM] [PF(6)]) as extraction solvents, it was observed that when using [C(8)MIM] [PF(6)] the cloudy solution was formed more readily than when using [C(6)MIM] [PF(6)] or [C(4)MIM] [PF(6)]. The factors affecting the extraction efficiency, such as the type and volume of ionic liquid, type and volume of disperser solvent, cooling in ice-water, sonication time, centrifuging time, sample pH and ionic strength, were optimised. A slight increase in the recoveries of fluoroquinolones was observed when an ice-water bath extraction step was included in the analytical procedure (85-107%) compared to those obtained without this step (83-96%). Under the optimum conditions, linearity of the method was observed over the range 10-300 ng L(-1) with correlation coefficient >0.9981. The proposed method has been found to have excellent sensitivity with limit of detection between 0.8 and 13 ng L(-1) and precision with relative standard deviation values between 4.8 and 9.4% (RSD, n=5). Good enrichment factors (122-205) and recoveries (85

  19. Final report : results of aquifer pumping and groundwater sampling at Everest, Kansas, in January-March 2006.

    SciTech Connect

    LaFreniere, L. M.; Environmental Science Division

    2006-09-30

    On September 8-9, 2005, representatives of the Kansas Department of Health and Environment (KDHE), the Commodity Credit Corporation of the U.S. Department of Agriculture (CCC/USDA), and Argonne National Laboratory met at the KDHE's offices in Topeka to review the status of the CCC/USDA's environmental activities in Kansas. As a result of this meeting, the KDHE recommended several additional activities to augment the CCC/USDA's investigations at Everest, Kansas, and assist in the selection of remedial approaches to be evaluated as part of a Corrective Action Study (CAS) for this site. The requested actions included the following: (1) Construction of several additional interpretive cross sections illustrating the hydrogeologic setting along the apparent main plume migration pathway to the north-northwest of the former CCC/USDA facility, as well as in the vicinity of the Nigh property. (2) Installation of additional permanent monitoring wells, to better constrain the apparent western, northern, and northwestern margins of the existing groundwater plume. (3) Development of technical recommendations for a phased pumping study of the Everest aquifer unit in the area near and to the north of the Nigh property.

  20. Results of soil, ground-water, surface-water, and streambed-sediment sampling at Air Force Plane 85, Columbus, Ohio, 1996

    USGS Publications Warehouse

    Parnell, J.M.

    1997-01-01

    The U.S. Geological Survey (USGS), in cooperation with Aeronautical Systems Center, Environmental Management Directorate, Restoration Division, prepared the Surface- and Ground- Water Monitoring Work Plan for Air Force Plant 85 (AFP 85 or Plant), Columbus, Ohio, under the Air Force Installation Restoration Program to characterize any ground-water, surface-water, and soil contamination that may exist at AFP 85. The USGS began the study in November 1996. The Plant was divided into nine sampling areas, which included some previously investi gated study sites. The investigation activities included the collection and presentation of data taken during drilling and water-quality sampling. Data collection focused on the saturated and unsatur ated zones and surface water. Twenty-three soil borings were completed. Ten monitoring wells (six existing wells and four newly constructed monitoring wells) were selected for water-quality sam pling. Surface-water and streambed-sediment sampling locations were chosen to monitor flow onto and off of the Plant. Seven sites were sampled for both surface-water and streambed-sediment quality. This report presents data on the selected inorganic and organic constituents in soil, ground water, surface water, and streambed sediments at AFP 85. The methods of data collection and anal ysis also are included. Knowledge of the geologic and hydrologic setting could aid Aeronautical Systems Center, Environmental Management Directorate, Restoration Division, and its governing regulatory agencies in future remediation studies.

  1. Groundwater-quality data in seven GAMA study units: results from initial sampling, 2004-2005, and resampling, 2007-2008, of wells: California GAMA Program Priority Basin Project

    USGS Publications Warehouse

    Kent, Robert; Belitz, Kenneth; Fram, Miranda S.

    2014-01-01

    The Priority Basin Project (PBP) of the Groundwater Ambient Monitoring and Assessment (GAMA) Program was developed in response to the Groundwater Quality Monitoring Act of 2001 and is being conducted by the U.S. Geological Survey (USGS) in cooperation with the California State Water Resources Control Board (SWRCB). The GAMA-PBP began sampling, primarily public supply wells in May 2004. By the end of February 2006, seven (of what would eventually be 35) study units had been sampled over a wide area of the State. Selected wells in these first seven study units were resampled for water quality from August 2007 to November 2008 as part of an assessment of temporal trends in water quality by the GAMA-PBP. The initial sampling was designed to provide a spatially unbiased assessment of the quality of raw groundwater used for public water supplies within the seven study units. In the 7 study units, 462 wells were selected by using a spatially distributed, randomized grid-based method to provide statistical representation of the study area. Wells selected this way are referred to as grid wells or status wells. Approximately 3 years after the initial sampling, 55 of these previously sampled status wells (approximately 10 percent in each study unit) were randomly selected for resampling. The seven resampled study units, the total number of status wells sampled for each study unit, and the number of these wells resampled for trends are as follows, in chronological order of sampling: San Diego Drainages (53 status wells, 7 trend wells), North San Francisco Bay (84, 10), Northern San Joaquin Basin (51, 5), Southern Sacramento Valley (67, 7), San Fernando–San Gabriel (35, 6), Monterey Bay and Salinas Valley Basins (91, 11), and Southeast San Joaquin Valley (83, 9). The groundwater samples were analyzed for a large number of synthetic organic constituents (volatile organic compounds [VOCs], pesticides, and pesticide degradates), constituents of special interest (perchlorate, N

  2. Design and evaluation of a field study on the contamination of selected volatile organic compounds and wastewater-indicator compounds in blanks and groundwater samples

    USGS Publications Warehouse

    Thiros, Susan A.; Bender, David A.; Mueller, David K.; Rose, Donna L.; Olsen, Lisa D.; Martin, Jeffrey D.; Bernard, Bruce; Zogorski, John S.

    2011-01-01

    The Field Contamination Study (FCS) was designed to determine the field processes that tend to result in clean field blanks and to identify potential sources of contamination to blanks collected in the field from selected volatile organic compounds (VOCs) and wastewater-indicator compounds (WICs). The VOCs and WICs analyzed in the FCS were detected in blanks collected by the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Program during 1996-2008 and 2002-08, respectively. To minimize the number of variables, the study required ordering of supplies just before sampling, storage of supplies and equipment in clean areas, and use of adequate amounts of purge-and-trap volatile-grade methanol and volatile pesticide-grade blank water (VPBW) to clean sampling equipment and to collect field blanks. Blanks and groundwater samples were collected during 2008-09 at 16 sites, which were a mix of water-supply and monitoring wells, located in 9 States. Five different sample types were collected for the FCS at each site: (1) a source-solution blank collected at the USGS National Water Quality Laboratory (NWQL) using laboratory-purged VPBW, (2) source-solution blanks collected in the field using laboratory-purged VPBW, (3) source-solution blanks collected in the field using field-purged VPBW, (4) a field blank collected using field-purged VPBW, and (5) a groundwater sample collected from a well. The source-solution blank and field-blank analyses were used to identify, quantify, and document extrinsic contamination and to help determine the sources and causes of data-quality problems that can affect groundwater samples. Concentrations of compounds detected in FCS analyses were quantified and results were stored in the USGS National Water Information System database after meeting rigorous identification and quantification criteria. The study also utilized information provided by laboratory analysts about evidence indicating the presence of selected compounds

  3. A portable automated system for trace gas sampling in the field and stable isotope analysis in the laboratory.

    PubMed

    Theis, Daniel E; Saurer, Matthias; Blum, Herbert; Frossard, Emmanuel; Siegwolf, Rolf T W

    2004-01-01

    A computer-controllable mobile system is presented which enables the automatic collection of 33 air samples in the field and the subsequent analysis for delta13C and delta18O stable isotope ratios of a carbon-containing trace gas in the laboratory, e.g. CO2, CO or CH4. The system includes a manifold gas source input for profile sampling and an infrared gas analyzer for in situ CO2 concentration measurements. Measurements of delta13C and delta18O of all 33 samples can run unattended and take less than six hours for CO2. Laboratory tests with three gases (compressed air with different pCO2 and stable isotope compositions) showed a measurement precision of 0.03 per thousand for delta13C and 0.02 per thousand for delta18O of CO2 (standard error (SE), n = 11). A field test of our system, in which 66 air samples were collected within a 24-hour period above grassland, showed a correlation of 0.99 (r2) between the inverse of pCO2 and delta13C of CO2. Storage of samples until analysis is possible for about 1 week; this can be an important factor for sampling in remote areas. A wider range of applications in the field is open with our system, since sampling and analysis of CO and CH4 for stable isotope composition is also possible. Samples of compressed air had a measurement precision (SE, n = 33) of 0.03 per thousand for delta13C and of 0.04 per thousand for delta18O on CO and of 0.07 per thousand for delta13C on CH4. Our system should therefore further facilitate research of trace gases in the context of the carbon cycle in the field, and opens many other possible applications with carbon- and possibly non-carbon-containing trace gases. PMID:15317047

  4. Simple semi-automated portable capillary electrophoresis instrument with contactless conductivity detection for the determination of β-agonists in pharmaceutical and pig-feed samples.

    PubMed

    Nguyen, Thi Anh Huong; Pham, Thi Ngoc Mai; Doan, Thi Tuoi; Ta, Thi Thao; Sáiz, Jorge; Nguyen, Thi Quynh Hoa; Hauser, Peter C; Mai, Thanh Duc

    2014-09-19

    An inexpensive, robust and easy to use portable capillary electrophoresis instrument with miniaturized high-voltage capacitively coupled contactless conductivity detection was developed. The system utilizes pneumatic operation to manipulate the solutions for all flushing steps. The different operations, i.e. capillary flushing, interface rinsing, and electrophoretic separation, are easily activated by turning an electronic switch. To allow the analysis of samples with limited available volume, and to render the construction less complicated compared to a computer-controlled counterpart, sample injection is carried out hydrodynamically directly from the sample vial into the capillary by manual syphoning. The system is a well performing solution where the financial means for the highly expensive commercial instruments are not available and where the in-house construction of a sophisticated automated instrument is not possible due to limited mechanical and electronic workshop facilities and software programming expertise. For demonstration, the system was employed successfully for the determination of some β-agonists, namely salbutamol, metoprolol and ractopamine down to 0.7ppm in pharmaceutical and pig-feed sample matrices in Vietnam. PMID:25115456

  5. Simultaneous analysis of organochlorinated pesticides (OCPs) and polychlorinated biphenyls (PCBs) from marine samples using automated pressurized liquid extraction (PLE) and Power Prep™ clean-up.

    PubMed

    Helaleh, Murad I H; Al-Rashdan, Amal; Ibtisam, A

    2012-05-30

    An automated pressurized liquid extraction (PLE) method followed by Power Prep™ clean-up was developed for organochlorinated pesticide (OCP) and polychlorinated biphenyl (PCB) analysis in environmental marine samples of fish, squid, bivalves, shells, octopus and shrimp. OCPs and PCBs were simultaneously determined in a single chromatographic run using gas chromatography-mass spectrometry-negative chemical ionization (GC-MS-NCI). About 5 g of each biological marine sample was mixed with anhydrous sodium sulphate and placed in the extraction cell of the PLE system. PLE is controlled by means of a PC using DMS 6000 software. Purification of the extract was accomplished using automated Power Prep™ clean-up with a pre-packed disposable silica column (6 g) supplied by Fluid Management Systems (FMS). All OCPs and PCBs were eluted from the silica column using two types of solvent: 80 mL of hexane and a 50 mL mixture of hexane and dichloromethane (1:1). A wide variety of fish and shellfish were collected from the fish market and analyzed using this method. The total PCB concentrations were 2.53, 0.25, 0.24, 0.24, 0.17 and 1.38 ng g(-1) (w/w) for fish, squid, bivalves, shells, octopus and shrimp, respectively, and the corresponding total OCP concentrations were 30.47, 2.86, 0.92, 10.72, 5.13 and 18.39 ng g(-1) (w/w). Lipids were removed using an SX-3 Bio-Beads gel permeation chromatography (GPC) column. Analytical criteria such as recovery, reproducibility and repeatability were evaluated through a range of biological matrices. PMID:22608412

  6. Passive extraction and clean-up of phenoxy acid herbicides in samples from a groundwater plume using hollow fiber supported liquid membranes.

    PubMed

    Liu, Jing-Fu; Toräng, Lars; Mayer, Philipp; Jönsson, Jan Ake

    2007-08-10

    Hollow fiber supported liquid membranes were applied for the passive extraction of phenoxy acid herbicides from water samples. Polypropylene hollow fiber membranes (240 microm i.d., 30 microm wall thickness, 0.05 microm pore size, 30 cm length) were impregnated with 2.0% tri-n-octylphosphine oxide (TOPO) in di-n-hexyl ether in the pores of the fiber wall to form a liquid membrane. They were then filled with basic solution in the lumen as acceptor and finally placed into the sample (donor). Complete extraction of phenoxy acid herbicides including 2,4-D, MCPA, dichlorprop, and mecoprop from an acidified sample (4 mL, adjusted to pH 1.5 with HCl) into basic acceptor (10 microL of 0.2M NaOH) was achieved after 4 h of shaking (100 rpm) resulting in an enrichment factor of 400 times. The acceptor was then neutralized by addition of HCl and injected into a HPLC system for the determination of the phenoxy acid herbicides. Environmentally relevant salinity (0-3.5% NaCl) and dissolved organic matter (0-25 mg/L of dissolved organic carbon) had no significant effect on the extraction. The method provided extraction efficiencies of more than 91%, detection limits of 0.3-0.6 microg/L, and combined extraction and clean up in one single step. This procedure was applied to determine aqueous concentrations of phenoxy acid herbicides in groundwater samples collected from an old dumping site (Cheminova, Denmark) with detected concentrations up to 5800 microg/L. Although the samples were very dirty with large amounts of suspended particles, non-aqueous phase liquids (NAPLs) and dissolved organic matters, good spike recoveries (80-126%) were obtained for 10 of the 11 samples. PMID:17449052

  7. Isotope Enrichment Detection by Laser Ablation - Laser Absorption Spectrometry: Automated Environmental Sampling and Laser-Based Analysis for HEU Detection

    SciTech Connect

    Anheier, Norman C.; Bushaw, Bruce A.

    2010-01-01

    The global expansion of nuclear power, and consequently the uranium enrichment industry, requires the development of new safeguards technology to mitigate proliferation risks. Current enrichment monitoring instruments exist that provide only yes/no detection of highly enriched uranium (HEU) production. More accurate accountancy measurements are typically restricted to gamma-ray and weight measurements taken in cylinder storage yards. Analysis of environmental and cylinder content samples have much higher effectiveness, but this approach requires onsite sampling, shipping, and time-consuming laboratory analysis and reporting. Given that large modern gaseous centrifuge enrichment plants (GCEPs) can quickly produce a significant quantity (SQ ) of HEU, these limitations in verification suggest the need for more timely detection of potential facility misuse. The Pacific Northwest National Laboratory (PNNL) is developing an unattended safeguards instrument concept, combining continuous aerosol particulate collection with uranium isotope assay, to provide timely analysis of enrichment levels within low enriched uranium facilities. This approach is based on laser vaporization of aerosol particulate samples, followed by wavelength tuned laser diode spectroscopy to characterize the uranium isotopic ratio through subtle differences in atomic absorption wavelengths. Environmental sampling (ES) media from an integrated aerosol collector is introduced into a small, reduced pressure chamber, where a focused pulsed laser vaporizes material from a 10 to 20-µm diameter spot of the surface of the sampling media. The plume of ejected material begins as high-temperature plasma that yields ions and atoms, as well as molecules and molecular ions. We concentrate on the plume of atomic vapor that remains after the plasma has expanded and then cooled by the surrounding cover gas. Tunable diode lasers are directed through this plume and each isotope is detected by monitoring absorbance

  8. Verification of performance with the automated direct optical TIRF immunosensor (River Analyser) in single and multi-analyte assays with real water samples.

    PubMed

    Tschmelak, Jens; Proll, Guenther; Gauglitz, Guenter

    2004-11-01

    In order to verify the reproducibility, precision, and robustness of the optical immunosensor River Analyser (RIANA), we investigated two common statistical methods to evaluate the limit of detection (LOD) and the limit of quantification (LOQ). Therefore, we performed a simultaneous multi-analyte calibration with atrazine, bisphenol A, and estrone in Milli-Q water. Using an automated biosensor, it was possible for the first time to achieve a LOD below 0.020 microg L(-1) using a common statistically based method without sample pre-treatment and pre-concentration for each of the analytes in a simultaneous multi-analyte calibration. This biosensor setup shows values comparable to those obtained by more classical analytical methods. Based on this calibration, we measured spiked and un-spiked real water samples with complex matrices (samples from different water bodies, from ground water sources, and tap water samples). The comparison between our River Analyser and common analytical methods (like GC-MS and HPLC-DAD) shows overall comparable values for all three analytes. Furthermore, a calibration of isoproturon (IPU) (in single analyte mode) resulted in a LOD of 0.016 microg L(-1), and a LOQ of 0.091 microg L(-1). In compliance with guidelines of the Association of Analytical Communities International (AOAC), six out of nine recovery rates (recovery rate: measured concentration divided by real concentration in percent) for three surface water samples with different matrices (spiked and un-spiked) could be obtained between 70 and 120% (recovery rates between 70 and 120%, as demanded by the guidelines of the AOAC International). The reproducibility was checked by measuring replica of each sample within independent repetitions. Robustness could be demonstrated by long-term stability tests of the biosensor surface. These studies show that the biosensor used offers the necessary reproducibility, precision, and robustness required for an analytical method. PMID:15522589

  9. Automated determination of nitrate plus nitrite in aqueous samples with flow injection analysis using vanadium (III) chloride as reductant.

    PubMed

    Wang, Shu; Lin, Kunning; Chen, Nengwang; Yuan, Dongxing; Ma, Jian

    2016-01-01

    Determination of nitrate in aqueous samples is an important analytical objective for environmental monitoring and assessment. Here we report the first automatic flow injection analysis (FIA) of nitrate (plus nitrite) using VCl3 as reductant instead of the well-known but toxic cadmium column for reducing nitrate to nitrite. The reduced nitrate plus the nitrite originally present in the sample react with the Griess reagent (sulfanilamide and N-1-naphthylethylenediamine dihydrochloride) under acidic condition. The resulting pink azo dye can be detected at 540 nm. The Griess reagent and VCl3 are used as a single mixed reagent solution to simplify the system. The various parameters of the FIA procedure including reagent composition, temperature, volume of the injection loop, and flow rate were carefully investigated and optimized via univariate experimental design. Under the optimized conditions, the linear range and detection limit of this method are 0-100 µM (R(2)=0.9995) and 0.1 µM, respectively. The targeted analytical range can be easily extended to higher concentrations by selecting alternative detection wavelengths or increasing flow rate. The FIA system provides a sample throughput of 20 h(-1), which is much higher than that of previously reported manual methods based on the same chemistry. National reference solutions and different kinds of aqueous samples were analyzed with our method as well as the cadmium column reduction method. The results from our method agree well with both the certified value and the results from the cadmium column reduction method (no significant difference with P=0.95). The spiked recovery varies from 89% to 108% for samples with different matrices, showing insignificant matrix interference in this method. PMID:26695325

  10. Results of 2001 Groundwater Sampling in Support of Conditional No Longer Contained-In Determination for the Snake River Plain Aquifer in the Vicinity of the Idaho Nuclear Technology and Engineering Center

    SciTech Connect

    Meachum, T.R.

    2002-04-26

    This report summarizes the results of sampling five groundwater monitoring wells in the vicinity of the Idaho Nuclear Technology and Engineering Center at the Idaho National Engineering and Environmental Laboratory in 2001. Information on general sampling practices, quality assurance practices, parameter concentrations, representativeness of sampling results, and cumulative cancer risk are presented. The information is provided to support a conditional No Longer Contained-In Determination for the Snake River Plain Aquifer in the vicinity of the Idaho Nuclear Technology and Engineering Center.

  11. Results of 2001 Groundwater Sampling in Support of Conditional No Longer Contained-In Determination for the Snake River Plain Aquifer in the Vicinity of the INTEC at the INEEL

    SciTech Connect

    Meachum, Teresa Ray

    2002-04-01

    This report summarizes the results of sampling five groundwater monitoring wells in the vicinity of the Idaho Nuclear Technology and Engineering Center at the Idaho National Engineering and Environmental Laboratory in 2001. Information on general sampling practices, quality assurance practices, parameter concentrations, representativeness of sampling results, and cumulative cancer risk are presented. The information is provided to support a conditional No Longer Contained-In Determination for the Snake River Plain Aquifer in the vicinity of the Idaho Nuclear Technology and Engineering Center.

  12. AUTOMATED WATER LEVEL MEASUREMENTS IN SMALL-DIAMETER AQUIFER TUBES

    SciTech Connect

    PETERSEN SW; EDRINGTON RS; MAHOOD RO; VANMIDDLESWORTH PE

    2011-01-14

    Groundwater contaminated with hexavalent chromium, strontium-90, and uranium discharges into the Columbia River along approximately 16 km (10 mi) of the shoreline. Various treatment systems have and will continue to be implemented to eliminate the impact of Hanford Site contamination to the river. To optimize the various remediation strategies, it is important to understand interactions between groundwater and the surface water of the Columbia River. An automated system to record water levels in aquifer sampling tubes installed in the hyporheic zone was designed and tested to (1) gain a more complete understanding of groundwater/river water interactions based on gaining and losing conditions ofthe Columbia River, (2) record and interpret data for consistent and defensible groundwater/surface water conceptual models that may be used to better predict subsurface contaminant fate and transport, and (3) evaluate the hydrodynamic influence of extraction wells in an expanded pump-and-treat system to optimize the treatment system. A system to measure water levels in small-diameter aquifer tubes was designed and tested in the laboratory and field. The system was configured to allow manual measurements to periodically calibrate the instrument and to permit aquifer tube sampling without removing the transducer tube. Manual measurements were collected with an e-tape designed and fabricated especially for this test. Results indicate that the transducer system accurately records groundwater levels in aquifer tubes. These data are being used to refine the conceptual and numeric models to better understand interactions in the hyporheic zone of the Columbia River and the adjacent river water and groundwater, and changes in hydrochemistry relative to groundwater flux as river water recharges the aquifer and then drains back out in response to changes in the river level.

  13. A fully automated effervescence assisted dispersive liquid-liquid microextraction based on a stepwise injection system. Determination of antipyrine in saliva samples.

    PubMed

    Medinskaia, Kseniia; Vakh, Christina; Aseeva, Darina; Andruch, Vasil; Moskvin, Leonid; Bulatov, Andrey

    2016-01-01

    A first attempt to automate the effervescence assisted dispersive liquid-liquid microextraction (EA-DLLME) has been reported. The method is based on the aspiration of a sample and all required aqueous reagents into the stepwise injection analysis (SWIA) manifold, followed by simultaneous counterflow injection of the extraction solvent (dichloromethane), the mixture of the effervescence agent (0.5 mol L(-1) Na2CO3) and the proton donor solution (1 mol L(-1) CH3COOH). Formation of carbon dioxide microbubbles generated in situ leads to the dispersion of the extraction solvent in the whole aqueous sample and extraction of the analyte into organic phase. Unlike the conventional DLLME, in the case of EA-DLLME, the addition of dispersive solvent, as well as, time consuming centrifugation step for disruption of the cloudy state is avoided. The phase separation was achieved by gentle bubbling of nitrogen stream (2 mL min(-1) during 2 min). The performance of the suggested approach is demonstrated by determination of antipyrine in saliva samples. The procedure is based on the derivatization of antipyrine by nitrite-ion followed by EA-DLLME of 4-nitrosoantipyrine and subsequent UV-Vis detection using SWIA manifold. The absorbance of the yellow-colored extract at the wavelength of 345 nm obeys Beer's law in the range of 1.5-100 µmol L(-1) of antipyrine in saliva. The LOD, calculated from a blank test based on 3σ, was 0.5 µmol L(-1). PMID:26703262

  14. Depth-dependent groundwater quality sampling at City of Tallahassee test well 32, Leon County, Florida, 2013

    USGS Publications Warehouse

    McBride, William S.; Wacker, Michael A.

    2015-01-01

    A test well was drilled by the City of Tallahassee to assess the suitability of the site for the installation of a new well for public water supply. The test well is in Leon County in north-central Florida. The U.S. Geological Survey delineated high-permeability zones in the Upper Floridan aquifer, using borehole-geophysical data collected from the open interval of the test well. A composite water sample was collected from the open interval during high-flow conditions, and three discrete water samples were collected from specified depth intervals within the test well during low-flow conditions. Water-quality, source tracer, and age-dating results indicate that the open interval of the test well produces water of consistently high quality throughout its length. The cavernous nature of the open interval makes it likely that the highly permeable zones are interconnected in the aquifer by secondary porosity features.

  15. Versatile sample environments and automation for biological solution X-ray scattering experiments at the P12 beamline (PETRA III, DESY)

    PubMed Central

    Blanchet, Clement E.; Spilotros, Alessandro; Schwemmer, Frank; Graewert, Melissa A.; Kikhney, Alexey; Jeffries, Cy M.; Franke, Daniel; Mark, Daniel; Zengerle, Roland; Cipriani, Florent; Fiedler, Stefan; Roessle, Manfred; Svergun, Dmitri I.

    2015-01-01

    A high-brilliance synchrotron P12 beamline of the EMBL located at the PETRA III storage ring (DESY, Hamburg) is dedicated to biological small-angle X-ray scattering (SAXS) and has been designed and optimized for scattering experiments on macromolecular solutions. Scatterless slits reduce the parasitic scattering, a custom-designed miniature active beamstop ensures accurate data normalization and the photon-counting PILATUS 2M detector enables the background-free detection of weak scattering signals. The high flux and small beam size allow for rapid experiments with exposure time down to 30–50 ms covering the resolution range from about 300 to 0.5 nm. P12 possesses a versatile and flexible sample environment system that caters for the diverse experimental needs required to study macromolecular solutions. These include an in-vacuum capillary mode for standard batch sample analyses with robotic sample delivery and for continuous-flow in-line sample purification and characterization, as well as an in-air capillary time-resolved stopped-flow setup. A novel microfluidic centrifugal mixing device (SAXS disc) is developed for a high-throughput screening mode using sub-microlitre sample volumes. Automation is a key feature of P12; it is controlled by a beamline meta server, which coordinates and schedules experiments from either standard or nonstandard operational setups. The integrated SASFLOW pipeline automatically checks for consistency, and processes and analyses the data, providing near real-time assessments of overall parameters and the generation of low-resolution models within minutes of data collection. These advances, combined with a remote access option, allow for rapid high-throughput analysis, as well as time-resolved and screening experiments for novice and expert biological SAXS users. PMID:25844078

  16. Shorter sampling periods and accurate estimates of milk volume and components are possible for pasture based dairy herds milked with automated milking systems.

    PubMed

    Kamphuis, Claudia; Burke, Jennie K; Taukiri, Sarah; Petch, Susan-Fay; Turner, Sally-Anne

    2016-08-01

    Dairy cows grazing pasture and milked using automated milking systems (AMS) have lower milking frequencies than indoor fed cows milked using AMS. Therefore, milk recording intervals used for herd testing indoor fed cows may not be suitable for cows on pasture based farms. We hypothesised that accurate standardised 24 h estimates could be determined for AMS herds with milk recording intervals of less than the Gold Standard (48 hs), but that the optimum milk recording interval would depend on the herd average for milking frequency. The Gold Standard protocol was applied on five commercial dairy farms with AMS, between December 2011 and February 2013. From 12 milk recording test periods, involving 2211 cow-test days and 8049 cow milkings, standardised 24 h estimates for milk volume and milk composition were calculated for the Gold Standard protocol and compared with those collected during nine alternative sampling scenarios, including six shorter sampling periods and three in which a fixed number of milk samples per cow were collected. Results infer a 48 h milk recording protocol is unnecessarily long for collecting accurate estimates during milk recording on pasture based AMS farms. Collection of two milk samples only per cow was optimal in terms of high concordance correlation coefficients for milk volume and components and a low proportion of missed cow-test days. Further research is required to determine the effects of diurnal variations in milk composition on standardised 24 h estimates for milk volume and components, before a protocol based on a fixed number of samples could be considered. Based on the results of this study New Zealand have adopted a split protocol for herd testing based on the average milking frequency for the herd (NZ Herd Test Standard 8100:2015). PMID:27600967

  17. Evaluation of the RapidHIT™ 200, an automated human identification system for STR analysis of single source samples.

    PubMed

    Holland, Mitchell; Wendt, Frank

    2015-01-01

    The RapidHIT™ 200 Human Identification System was evaluated to determine its suitability for STR analysis of single source buccal swabs. Overall, the RapidHIT™ 200 performed as well as our traditional capillary electrophoresis based method in producing useable profile information on a first-pass basis. General observations included 100% concordance with known profile information, consistent instrument performance after two weeks of buccal swab storage, and an absence of contamination in negative controls. When data analysis was performed by the instrument software, 95.3% of the 85 samples in the reproducibility study gave full profiles. Including the 81 full profiles, a total of 2682 alleles were correctly called by the instrument software, or 98.6% of 2720 possible alleles tested. Profile information was generated from as little as 10,000 nucleated cells, with swab collection technique being a major contributing factor to profile quality. The average peak-height-ratio for heterozygote profiles (81%) was comparable to conventional STR analysis, and while a high analytical threshold was required when offline profile analysis was performed (800 RFU), it was proportionally consistent with traditional methods. Stochastic sampling effects were evaluated, and a manageable approach to address limits of detection for homozygote profiles is provided. These results support consideration of the RapidHIT™ 200 as an acceptable alternative to conventional, laboratory based STR analysis for the testing of single source buccal samples, with review of profile information as a requirement until an expert software system is incorporated, and when proper developmental and internal validation studies have been completed. PMID:25286443

  18. Automated determination of urinary Na+, K+, chloride, inorganic phosphate, urea, and creatinine without sample dilution, with the "RA-XT".

    PubMed

    Fesus, P D; Pressac, M; Braconnier, F; Aymard, P

    1989-03-01

    We describe how concentrations of chloride, urea, inorganic phosphate, and creatinine in urine can be measured directly, without manual sample dilution, in a discrete analyzer (the Technicon "RA-XT"). These methods were accurate for concentrations of chloride up to 280 mmol/L, urea up to 500 mmol/L, inorganic phosphate up to 50 mmol/L, and creatinine up to 30 mmol/L. CVs are less than 3% nd results correlate well with those obtained by continuous-flow analysis (SMA-II). All these reagents are stable at room temperature for three weeks. Analyses are easy to perform and infrequent calibration is required. PMID:2920416

  19. Direct Sampling and Analysis from Solid Phase Extraction Cards using an Automated Liquid Extraction Surface Analysis Nanoelectrospray Mass Spectrometry System

    SciTech Connect

    Walworth, Matthew J; ElNaggar, Mariam S; Stankovich, Joseph J; WitkowskiII, Charles E.; Norris, Jeremy L; Van Berkel, Gary J

    2011-01-01

    Direct liquid extraction based surface sampling, a technique previously demonstrated with continuous flow and autonomous pipette liquid microjunction surface sampling probes, has recently been implemented as the Liquid Extraction Surface Analysis (LESA) mode on the commercially available Advion NanoMate chip-based infusion nanoelectrospray ionization system. In the present paper, the LESA mode was applied to the analysis of 96-well format custom solid phase extraction (SPE) cards, with each well consisting of either a 1 or 2 mm diameter monolithic hydrophobic stationary phase. These substrate wells were conditioned, loaded with either single or multi-component aqueous mixtures, and read out using the LESA mode of a TriVersa NanoMate or a Nanomate 100 coupled to an ABI/Sciex 4000QTRAPTM hybrid triple quadrupole/linear ion trap mass spectrometer and a Thermo LTQ XL linear ion trap mass spectrometer. Extraction conditions, including extraction/nanoESI solvent composition, volume, and dwell times, were optimized in the analysis of targeted compounds. Limit of detection and quantitation as well as analysis reproducibility figures of merit were measured. Calibration data was obtained for propranolol using a deuterated internal standard which demonstrated linearity and reproducibility. A 10x increase in signal and cleanup of micromolar Angiotensin II from a concentrated salt solution was demonstrated. Additionally, a multicomponent herbicide mixture at ppb concentration levels was analyzed using MS3 spectra for compound identification in the presence of isobaric interferences.

  20. Negative symptoms in schizophrenia: a study in a large clinical sample of patients using a novel automated method

    PubMed Central

    Patel, Rashmi; Jayatilleke, Nishamali; Broadbent, Matthew; Chang, Chin-Kuo; Foskett, Nadia; Gorrell, Genevieve; Hayes, Richard D; Jackson, Richard; Johnston, Caroline; Shetty, Hitesh; Roberts, Angus; McGuire, Philip; Stewart, Robert

    2015-01-01

    Objectives To identify negative symptoms in the clinical records of a large sample of patients with schizophrenia using natural language processing and assess their relationship with clinical outcomes. Design Observational study using an anonymised electronic health record case register. Setting South London and Maudsley NHS Trust (SLaM), a large provider of inpatient and community mental healthcare in the UK. Participants 7678 patients with schizophrenia receiving care during 2011. Main outcome measures Hospital admission, readmission and duration of admission. Results 10 different negative symptoms were ascertained with precision statistics above 0.80. 41% of patients had 2 or more negative symptoms. Negative symptoms were associated with younger age, male gender and single marital status, and with increased likelihood of hospital admission (OR 1.24, 95% CI 1.10 to 1.39), longer duration of admission (β-coefficient 20.5 days, 7.6–33.5), and increased likelihood of readmission following discharge (OR 1.58, 1.28 to 1.95). Conclusions Negative symptoms were common and associated with adverse clinical outcomes, consistent with evidence that these symptoms account for much of the disability associated with schizophrenia. Natural language processing provides a means of conducting research in large representative samples of patients, using data recorded during routine clinical practice. PMID:26346872

  1. CAPSTONE REPORT ON THE APPLICATION, MONITORING, AND PERFORMANCE OF PERMEABLE REACTIVE BARRIERS FOR GROUND-WATER REMEDIATION: VOL. 2 LONG-TERM MONITORING OF PRBS: SOIL AND GROUND WATER SAMPLING

    EPA Science Inventory

    This report discusses soil and ground-water sampling methods and procedures used to evaluate the long-term performance of permeable reactive barriers (PRBS) at two sites, Elizabeth City, NC, and the Denver Federal Center near Lakewood, CO. Both PRBs were installed in 1996 and hav...

  2. Radiological Monitoring Results For Groundwater Samples Associated with the Industrial Wastewater Reuse Permit for the Materials and Fuels Complex Industrial Waste Ditch and Pond: November 1, 2010-October 31, 2011

    SciTech Connect

    David Frederick

    2012-02-01

    This report summarizes radiological monitoring performed on samples from specific groundwater monitoring wells associated with the Industrial Wastewater Reuse Permit for the Materials and Fuels Complex Industrial Waste Ditch and Industrial Waste Pond (No.LA-000160-01). The radiological monitoring was performed to fulfill Department of Energy requirements under the Atomic Energy Act.

  3. Radiological Monitoring Results for Groundwater Samples Associated with the Industrial Wastewater Reuse Permit for the Materials and Fuels Complex Industrial Waste Ditch and Pond: November 1, 2011-October 31, 2012

    SciTech Connect

    Mike lewis

    2013-02-01

    This report summarizes radiological monitoring performed on samples from specific groundwater monitoring wells associated with the Industrial Wastewater Reuse Permit for the Materials and Fuels Complex Industrial Waste Ditch and Industrial Waste Pond WRU-I-0160-01, Modification 1 (formerly LA-000160-01). The radiological monitoring was performed to fulfill Department of Energy requirements under the Atomic Energy Act.

  4. Radiological Monitoring Results For Groundwater Samples Associated with the Industrial Wastewater Reuse Permit for the Materials and Fuels Complex Industrial Waste Ditch and Pond: May 1, 2010-October 31, 2010

    SciTech Connect

    David B. Frederick

    2011-02-01

    This report summarizes radiological monitoring performed on samples from specific groundwater monitoring wells associated with the Industrial Wastewater Reuse Permit for the Materials and Fuels Complex Industrial Waste Ditch and Industrial Waste Pond (#LA-000160-01). The radiological monitoring was performed to fulfill Department of Energy requirements under the Atomic Energy Act.

  5. Radiological Monitoring Results for Groundwater Samples Associated with the Industrial Wastewater Reuse Permit for the Materials and Fuels Complex Industrial Waste Ditch and Pond: November 1, 2012-October 31, 2013

    SciTech Connect

    Mike Lewis

    2014-02-01

    This report summarizes radiological monitoring performed on samples from specific groundwater monitoring wells associated with the Industrial Wastewater Reuse Permit for the Materials and Fuels Complex Industrial Waste Ditch and Industrial Waste Pond WRU-I-0160-01, Modification 1 (formerly LA-000160-01). The radiological monitoring was performed to fulfill Department of Energy requirements under the Atomic Energy Act.

  6. Automated solid-phase extraction and liquid chromatography-electrospray ionization-mass spectrometry for the determination of flunitrazepam and its metabolites in human urine and plasma samples.

    PubMed

    Jourdil, N; Bessard, J; Vincent, F; Eysseric, H; Bessard, G

    2003-05-25

    A sensitive and specific method using reversed-phase liquid chromatography coupled with electrospray ionization-mass spectrometry (LC-ESI-MS) has been developed for the quantitative determination of flunitrazepam (F) and its metabolites 7-aminoflunitrazepam (7-AF), N-desmethylflunitrazepam (N-DMF) and 3-hydroxyflunitrazepam (3-OHF) in biological fluids. After the addition of deuterium labelled standards of F,7-AF and N-DMF, the drugs were isolated from urine or plasma by automated solid-phase extraction, then chromatographed in an isocratic elution mode with a salt-free eluent. The quantification was performed using selected ion monitoring of protonated molecular ions (M+H(+)). Experiments were carried out to improve the extraction recovery (81-100%) and the sensitivity (limit of detection 0.025 ng/ml for F and 7-AF, 0.040 ng/ml for N-DMF and 0.200 ng/ml for 3-OHF). The method was applied to the determination of F and metabolites in drug addicts including withdrawal urine samples and in one date-rape plasma and urine sample. PMID:12705961

  7. Automated trace determination of earthy-musty odorous compounds in water samples by on-line purge-and-trap-gas chromatography-mass spectrometry.

    PubMed

    Salemi, Amir; Lacorte, Sílvia; Bagheri, Habib; Barceló, Damià

    2006-12-15

    An automated technique based on purge-and-trap coupled to gas chromatography with mass spectrometric detection has been developed and optimized for the trace determination of five of the most important water odorants; 2-isopropyl-3-methoxypyrazine, 2-isobutyl-3-methoxypyrazine, 2-methylisoborneol, 2,4,6-trichloroanisole and geosmin. The extraction method was absolutely solvent-free. Analytes were purged from 20 ml of water sample containing sodium chloride at room temperature by a flow of He and trapped on a Tenax sorbent. The desorption step was performed with helium and temperature programming and desorbed analytes were directly transferred to a gas chromatograph coupled to a mass spectrometer for separation and determination. The method was reproducible (RSD<8%) and linear over the calibration range (10-200 ngl(-1)). The relative recoveries of the analytes from ground water sample were calculated and were between 80 and 103% and limits of detection (LOD) below odor thresholds were achieved for most of the compounds. PMID:17055519

  8. An automated headspace solid-phasemicroextraction followed by gas chromatography–mass spectrometry method to determine macrocyclic musk fragrances in wastewater samples.

    PubMed

    Vallecillos, Laura; Borrull, Francesc; Pocurull, Eva

    2013-11-01

    A fully automated method has been developed for determining eight macrocyclic musk fragrances in wastewater samples. The method is based on headspace solid-phase microextraction (HS-SPME) followed by gas chromatography–mass spectrometry (GC-MS). Five different fibres (PDMS 7 μm, PDMS 30 μm, PDMS 100 μm, PDMS/DVB 65 μm and PA 85 μm) were tested. The best conditions were achieved when a PDMS/DVB 65 μm fibre was exposed for 45 min in the headspace of 10 mL water samples at 100 °C. Method detection limits were found in the low ng L−1 range between 0.75 and 5 ng L−1 depending on the target analytes. Moreover, under optimized conditions, the method gave good levels of intra-day and inter-day repeatabilities in wastewater samples with relative standard deviations (n =5, 1,000 ng L−1) less than 9 and 14 %, respectively. The applicability of the method was tested with influent and effluent urban wastewater samples from different wastewater treatment plants (WWTPs). The analysis of influent urban wastewater revealed the presence of most of the target macrocyclic musks with, most notably, the maximum concentration of ambrettolide being obtained in WWTP A (4.36 μg L−1) and WWTP B (12.29 μg L−1), respectively. The analysis of effluent urban wastewater showed a decrease in target analyte concentrations, with exaltone and ambrettolide being the most abundant compounds with concentrations varying between below method quantification limit (

  9. Groundwater Recharge Estimates under Agricultural Lands based on Deep Vadose Zone Sampling, Monitoring and Modeling, Mediterranean Climate, Israel

    NASA Astrophysics Data System (ADS)

    Kurtzman, D.; Turkeltub, T.; Shapira, R.; Dahan, O.

    2011-12-01

    Models of unsaturated flow and chloride transport under different agricultural settings were calibrated to deep vadose-zone samples or monitoring systems' data. The land settings include irrigated citrus orchards in light and heavy soils, a rain-fed winter crop field, an irrigated summer crop field and a bare sand dune. Vadose zone monitoring system (VMS), which enables continuous measurements of the vadose zone water content and frequent sampling of pore water at selected points across the entire vadose zone were used in three sites. In other sites direct push rigs were used for obtaining continuous core to depths ~ 10 m, and all physical and chemical characterization were derived in the lab. Hydrus 1D code was used for calibrating the models, validation runs (only in monitored sites) and simulations. In orchards, large variability of rechrge rates within the same orchard was observed. On average, relatively low recharge rates were calculated (~10% of precipitation+ irrigation), and high masses of chloride accumulations are found in many profiles obtained under orchards. Recharge variability within the same crop-field was usually smaller than the variability found in orchards while average relative recharge rates are usually higher than in orchards. Calibrated models were used for simulation of long periods and some simple precipitation-recharge statistics for the different land uses were obtained. Scenarios of land-use and climate change where used to produce estimates of the effects of these changes on recharge (e.g. 25% drop in rainfall will lead to ~50% drop in recharge under rain-fed crop).

  10. Automated solvent concentrator

    NASA Technical Reports Server (NTRS)

    Griffith, J. S.; Stuart, J. L.

    1976-01-01

    Designed for automated drug identification system (AUDRI), device increases concentration by 100. Sample is first filtered, removing particulate contaminants and reducing water content of sample. Sample is extracted from filtered residue by specific solvent. Concentrator provides input material to analysis subsystem.

  11. 40 CFR 265.91 - Ground-water monitoring system.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 40 Protection of Environment 26 2014-07-01 2014-07-01 false Ground-water monitoring system. 265.91... DISPOSAL FACILITIES Ground-Water Monitoring § 265.91 Ground-water monitoring system. (a) A ground-water monitoring system must be capable of yielding ground-water samples for analysis and must consist of:...

  12. 40 CFR 265.91 - Ground-water monitoring system.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 40 Protection of Environment 27 2012-07-01 2012-07-01 false Ground-water monitoring system. 265.91... DISPOSAL FACILITIES Ground-Water Monitoring § 265.91 Ground-water monitoring system. (a) A ground-water monitoring system must be capable of yielding ground-water samples for analysis and must consist of:...

  13. 40 CFR 265.91 - Ground-water monitoring system.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 40 Protection of Environment 26 2011-07-01 2011-07-01 false Ground-water monitoring system. 265.91... DISPOSAL FACILITIES Ground-Water Monitoring § 265.91 Ground-water monitoring system. (a) A ground-water monitoring system must be capable of yielding ground-water samples for analysis and must consist of:...

  14. 40 CFR 265.91 - Ground-water monitoring system.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 40 Protection of Environment 27 2013-07-01 2013-07-01 false Ground-water monitoring system. 265.91... DISPOSAL FACILITIES Ground-Water Monitoring § 265.91 Ground-water monitoring system. (a) A ground-water monitoring system must be capable of yielding ground-water samples for analysis and must consist of:...

  15. 40 CFR 265.91 - Ground-water monitoring system.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 40 Protection of Environment 25 2010-07-01 2010-07-01 false Ground-water monitoring system. 265.91... DISPOSAL FACILITIES Ground-Water Monitoring § 265.91 Ground-water monitoring system. (a) A ground-water monitoring system must be capable of yielding ground-water samples for analysis and must consist of:...

  16. A METHOD FOR AUTOMATED ANALYSIS OF 10 ML WATER SAMPLES CONTAINING ACIDIC, BASIC, AND NEUTRAL SEMIVOLATILE COMPOUNDS LISTED IN USEPA METHOD 8270 BY SOLID PHASE EXTRACTION COUPLED IN-LINE TO LARGE VOLUME INJECTION GAS CHROMATOGRAPHY/MASS SPECTROMETRY

    EPA Science Inventory

    Data is presented showing the progress made towards the development of a new automated system combining solid phase extraction (SPE) with gas chromatography/mass spectrometry for the single run analysis of water samples containing a broad range of acid, base and neutral compounds...

  17. Automation of the quantitative determination of elemental content in samples using neutron activation analysis on the IBR-2 reactor at the frank laboratory for neutron physics, joint institute for nuclear research

    NASA Astrophysics Data System (ADS)

    Dmitriev, A. Yu.; Pavlov, S. S.

    2013-01-01

    Software for the automated quantitative determination of element concentrations in samples is described. This software is used in neutron activation analysis (NAA) at the IBR-2 reactor of the Frank Laboratory for Neutron Physics, Joint Institute for Nuclear Research (FLNP JINR).

  18. Separation of plutonium and neptunium species by capillary electrophoresis-inductively coupled plasma-mass spectrometry and application to natural groundwater samples.

    PubMed

    Kuczewski, Bernhard; Marquardt, Christian M; Seibert, Alice; Geckeis, Horst; Kratz, Jens Volker; Trautmann, Norbert

    2003-12-15

    Capillary electrophoresis (CE) was coupled to ICPMS in order to combine the good performance of this separation technique with the high sensitivity of the ICPMS for the analysis of plutonium and neptunium oxidation states. The combination of a fused-silica capillary with a MicroMist AR 30-I-FM02 nebulizer and a Cinnabar small-volume cyclonic spray chamber yielded the best separation results. With this setup, it was possible to separate a model element mixture containing neptunium (NpO2(+)), uranium (UO2(2+)), lanthanum (La3+), and thorium (Th4+) in 1 M acetic acid. The same conditions were also suitable for the separation of various oxidation states of plutonium and neptunium in different aqueous samples. All separations were obtained within less than 15 min. A detection limit of 50 ppb identical with 2 x 10(-7) M (3-fold standard deviation of a blank) was achieved. To prove the negligible disturbance of the plutonium and neptunium redox equilibria during the CE separations, plutonium and neptunium speciation by CE-ICPMS in acidic solutions was compared with the results of UV/visible absorption spectroscopy and was found to be in good agreement. The CE-ICPMS system was also applied to study the reduction of Pu(VI) in a humic acid-containing groundwater at different pH values. PMID:14670034

  19. In situ derivatization combined to automated microextraction by packed sorbents for the determination of chlorophenols in soil samples by gas chromatography mass spectrometry.

    PubMed

    González Paredes, Rosa María; García Pinto, Carmelo; Pérez Pavón, José Luis; Moreno Cordero, Bernardo

    2014-09-12

    A method based on the coupling of in situ extraction and derivatization of chlorophenols (CPs) (2-chlorophenol, 4-chloro-3-methylphenol, 2,4-dichlorophenol, and 2,4,6-trichlorophenol) from soils, accomplishing their preconcentration by means of automated microextraction by packed sorbent (MEPS), is proposed. After extraction and acylation of the chlorophenols in aqueous medium, the liquid phase obtained is subjected to the MEPS procedure. The QuEChERS (Quick, Easy, Cheap, Effective, Rugged and Safe) and MEPS techniques were compared and the results confirmed the preconcentration carried out with MEPS. The existence of a matrix effect was checked and the analytical characteristics of the method were determined in a soil sample. The method provided good linearity (from 1 to 12μgkg(-1)), together with good repeatability and reproducibility values (RSD equal to or less than 10%). The limits of detection were in the 0.118-0.894μgkg(-1) range. A certified reference material was applied to validate the proposed methodology. PMID:25113872

  20. A fully automated effervescence-assisted switchable solvent-based liquid phase microextraction procedure: Liquid chromatographic determination of ofloxacin in human urine samples.

    PubMed

    Vakh, Christina; Pochivalov, Aleksei; Andruch, Vasil; Moskvin, Leonid; Bulatov, Andrey

    2016-02-11

    A novel fully automated effervescence-assisted switchable solvent-based liquid phase microextraction procedure has been suggested. In this extraction method, medium-chain saturated fatty acids were investigated as switchable hydrophilicity solvents. The conversion of fatty acid into hydrophilic form was carried out in the presence of sodium carbonate. The injection of sulfuric acid into the solution decreased the pH value of the solution, thus, microdroplets of the fatty acid were generated. Carbon dioxide bubbles were generated in-situ, and promoted the extraction process and final phase separation. The performance of the suggested approach was demonstrated by the determination of ofloxacin in human urine samples using high-performance liquid chromatography with fluorescence detection. This analytical task was used as a proof-of-concept example. Under the optimal conditions, the detector response of ofloxacin was linear in the concentration ranges of 3·10(-8)-3·10(-6) mol L(-1). The limit of detection, calculated from a blank test based on 3σ, was 1·10(-8) mol L(-1). The results demonstrated that the presented approach is highly cost-effective, simple, rapid and environmentally friendly. PMID:26803002

  1. Determination of pharmaceutical compounds in surface- and ground-water samples by solid-phase extraction and high-performance liquid chromatography-electrospray ionization mass spectrometry

    USGS Publications Warehouse

    Cahill, J.D.; Furlong, E.T.; Burkhardt, M.R.; Kolpin, D.; Anderson, L.G.

    2004-01-01

    Commonly used prescription and over-the-counter pharmaceuticals are possibly present in surface- and ground-water samples at ambient concentrations less than 1 μg/L. In this report, the performance characteristics of a combined solid-phase extraction isolation and high-performance liquid chromatography–electrospray ionization mass spectrometry (HPLC–ESI-MS) analytical procedure for routine determination of the presence and concentration of human-health pharmaceuticals are described. This method was developed and used in a recent national reconnaissance of pharmaceuticals in USA surface waters. The selection of pharmaceuticals evaluated for this method was based on usage estimates, resulting in a method that contains compounds from diverse chemical classes, which presents challenges and compromises when applied as a single routine analysis. The method performed well for the majority of the 22 pharmaceuticals evaluated, with recoveries greater than 60% for 12 pharmaceuticals. The recoveries of angiotensin-converting enzyme inhibitors, a histamine (H2) receptor antagonist, and antihypoglycemic compound classes were less than 50%, but were retained in the method to provide information describing the potential presence of these compounds in environmental samples and to indicate evidence of possible matrix enhancing effects. Long-term recoveries, evaluated from reagent-water fortifications processed over 2 years, were similar to initial method performance. Method detection limits averaged 0.022 μg/L, sufficient for expected ambient concentrations. Compound-dependent matrix effects on HPLC/ESI-MS analysis, including enhancement and suppression of ionization, were observed as a 20–30% increase in measured concentrations for three compounds and greater than 50% increase for two compounds. Changing internal standard and more frequent ESI source maintenance minimized matrix effects. Application of the method in the national survey demonstrates that several

  2. Accurate and Precise in Situ Zircon U-Pb age Dating With High Sample Throughput by Automated LA-SF-ICP-MS

    NASA Astrophysics Data System (ADS)

    Frei, D.; Gerdes, A.; Schersten, A.; Hollis, J. A.; Martina, F.; Knudsen, C.

    2006-12-01

    Zircon is an ubiquitous mineral in most crystalline rocks as well as clastic sediments. The high resistance to thermal resetting and physical erosion makes zircon an exceptionally useful mineral for precise and accurate dating of thermal geological events. For example, the analysis of the U-Pb ages of detrital zircon grains in clastic sediments is a powerful tool in sedimentary provenance studies. Accurate and precise U-Pb ages of > 100 zircon grains in a sample usually allow to detect all major sedimentary source age components with statistical confidence. U-Pb age dating of detrital zircons is generally the domain of high resolution ion microprobe techniques (high resolution SIMS), where relatively rapid in situ analysis can be achieved. The major limitations of these techniques are sample throughput (about 75 zircon age dates per 24 hours), the very high purchasing and operating costs of the equipment and the need for highly specialised personnel, resulting in high cost. These high costs usually impose uncomfortable restrictions on the number of samples that can be analysed in a provenance study. Here, we present a high sample throughput technique for highly accurate and precise U-Pb dating of zircons by laser ablation magnetic sectorfield inductively coupled plasma mass spectrometry (LA-SF-ICP-MS). This technique takes advantage of recent progress in laser technology and the introduction of magnetic sectorfield ICP-MS instruments. Based on a ThermoFinnigan Element2 magnetic sctorfield ICP-MS and a New Wave UP 213 laser ablation system, this techniques allows U-Pb dating of zircon grains with precision, accuray and spatial resolution comparable to high resolution SIMS. Because an individual analysis is carried out in less than two minutes and all data is acquired automated in pre-set mode with only minimal operator presence, the sample throughput is an order of magnitude higher compared to high resolution SIMS. Furthermore, the purchasing and operating costs of

  3. Groundwater bills

    NASA Astrophysics Data System (ADS)

    U.S. lawmakers have become concerned about groundwater problems in the United States, and thus the contamination of groundwater is rapidly becoming one of the hottest issues of 1987 and probably for many years into the future. The 100th Congress has seen a proliferation of bills relating to various problems involving groundwater: need for more data, funding of research, and development of standards for groundwater quality. Because round 50% of the nation's drinking water is obtained from groundwater, the available support is dependent not only upon the available quantity but also on the quality of that supply.Because groundwater quality in general and groundwater contamination in particular provides such complex problems, final legislation probably will emphasize more research and more data collection. At present, a bill, the National Ground Water Contamination Research Act, has been introduced in the House of Representatives by Rep. Sam Gejdenson (D-Conn.), and a companion bill has been introduced in the Senate by Sen. David Durenberger (R-Minn.). These bills renew action on a groundwater research bill that passed the House but not the Senate near the end of the 99th Congress. The bills address not only research but also promote a national program for the assessment of groundwater quality and a national clearinghouse for groundwater information.

  4. Radiostrontium and radium analysis in low-level environmental samples following a multi-stage semi-automated chromatographic sequential separation.

    PubMed

    St-Amant, Nadereh; Whyte, Jeffrey C; Rousseau, Marie-Eve; Lariviere, Dominic; Ungar, R Kurt; Johnson, Sonia

    2011-01-01

    Strontium isotopes, (89)Sr and (90)Sr, and (226)Ra being radiotoxic when ingested, are routinely monitored in milk and drinking water samples collected from different regions in Canada. In order to monitor environmental levels of activity, a novel semi-automated sensitive method has been developed at the Radiation Protection Bureau of Health Canada (Ottawa, Canada). This method allows the separation and quantification of both (89)Sr and (90)Sr and has also been adapted to quantify (226)Ra during the same sample preparation procedure. The method uses a 2-stage purification process during which matrix constituents, such as magnesium and calcium that are rich in milk, are removed as well as the main beta-interferences (e.g., (40)K, (87)Rb, (134)Cs, (137)Cs, and (140)Ba). The first purification step uses strong cation exchange (SCX) chromatography with commercially available resins. In a second step, fractions containing the radiostrontium analytes are further purified using high-performance ion chromatography (HPIC). While (89)Sr is quantified by Cerenkov counting immediately after the second purification stage, the same vial is counted again after a latent period of 10-14 days to quantify the (90)Sr activity based on (90)Y ingrowth. Similarly, the activity of (226)Ra, which is separated by SCX only, is determined via the emanation of (222)Rn in a 2-phase aqueous/cocktail system using liquid scintillation counting. The minimum detectable concentration (MDC) for (89)Sr and (90)Sr for a 200 min count time at 95% confidence interval is 0.03 and 0.02 Bq/L, respectively. The MDC for (226)Ra for a 100 min count time is 0.002 Bq/L. Semi-annual intercomparison samples from the USA Department of Energy Mixed Analyte Performance Evaluation Program (MAPEP) were used to validate the method for (89)Sr and (90)Sr. Spiked water samples prepared in-house and from International Atomic Energy Agency (IAEA) were used to validate the (226)Ra assay. PMID:20846869

  5. Testing of an automated online EA-IRMS method for fast and simultaneous carbon content and stable isotope measurement of aerosol samples

    NASA Astrophysics Data System (ADS)

    Major, István; Gyökös, Brigitta; Túri, Marianna; Futó, István; Filep, Ágnes; Hoffer, András; Molnár, Mihály

    2016-04-01

    Comprehensive atmospheric studies have demonstrated that carbonaceous aerosol is one of the main components of atmospheric particulate matter over Europe. Various methods, considering optical or thermal properties, have been developed for quantification of the accurate amount of both organic and elemental carbon constituents of atmospheric aerosol. The aim of our work was to develop an alternative fast and easy method for determination of the total carbon content of individual aerosol samples collected on prebaked quartz filters whereby the mass and surface concentration becomes simply computable. We applied the conventional "elemental analyzer (EA) coupled online with an isotope ratio mass spectrometer (IRMS)" technique which is ubiquitously used in mass spectrometry. Using this technique we are able to measure simultaneously the carbon stable isotope ratio of the samples, as well. During the developing process, we compared the EA-IRMS technique with an off-line catalytic combustion method worked out previously at Hertelendi Laboratory of Environmental Studies (HEKAL). We tested the combined online total carbon content and stable isotope ratio measurement both on standard materials and real aerosol samples. Regarding the test results the novel method assures, on the one hand, at least 95% of carbon recovery yield in a broad total carbon mass range (between 100 and 3000 ug) and, on the other hand, a good reproducibility of stable isotope measurements with an uncertainty of ± 0.2 per mill. Comparing the total carbon results obtained by the EA-IRMS and the off-line catalytic combustion method we found a very good correlation (R2=0.94) that proves the applicability of both preparation method. Advantages of the novel method are the fast and simplified sample preparation steps and the fully automated, simultaneous carbon stable isotope ratio measurement processes. Furthermore stable isotope ratio results can effectively be applied in the source apportionment

  6. Determination of aflatoxins in food samples by automated on-line in-tube solid-phase microextraction coupled with liquid chromatography-mass spectrometry.

    PubMed

    Nonaka, Y; Saito, K; Hanioka, N; Narimatsu, S; Kataoka, H

    2009-05-15

    A simple and sensitive automated method for determination of aflatoxins (B1, B2, G1, and G2) in nuts, cereals, dried fruits, and spices was developed consisting of in-tube solid-phase microextraction (SPME) coupled with liquid chromatography-mass spectrometry (LC-MS). Aflatoxins were separated within 8 min by high-performance liquid chromatography using a Zorbax Eclipse XDB-C8 column with methanol/acetonitrile (60/40, v/v): 5mM ammonium formate (45:55) as the mobile phase. Electrospray ionization conditions in the positive ion mode were optimized for MS detection of aflatoxins. The pseudo-molecular ions [M+H](+) were used to detect aflatoxins in selected ion monitoring (SIM) mode. The optimum in-tube SPME conditions were 25draw/eject cycles of 40 microL of sample using a Supel-Q PLOT capillary column as an extraction device. The extracted aflatoxins were readily desorbed from the capillary by passage of the mobile phase, and no carryover was observed. Using the in-tube SPME LC-MS with SIM method, good linearity of the calibration curve (r>0.9994) was obtained in the concentration range of 0.05-2.0 ng/mL using aflatoxin M1 as an internal standard, and the detection limits (S/N=3) of aflatoxins were 2.1-2.8 pg/mL. The in-tube SPME method showed >23-fold higher sensitivity than the direct injection method (10 microL injection volume). The within-day and between-day precision (relative standard deviations) at the concentration of 1 ng/mL aflatoxin mixture were below 3.3% and 7.7% (n=5), respectively. This method was applied successfully to analysis of food samples without interference peaks. The recoveries of aflatoxins spiked into nuts and cereals were >80%, and the relative standard deviations were <11.2%. Aflatoxins were detected at <10 ng/g in several commercial food samples. PMID:19328492

  7. Automated solid-phase extraction for the determination of polybrominated diphenyl ethers and polychlorinated biphenyls in serum--application on archived Norwegian samples from 1977 to 2003.

    PubMed

    Thomsen, Cathrine; Liane, Veronica Horpestad; Becher, Georg

    2007-02-01

    An analytical method comprised of automated solid-phase extraction and determination using gas chromatography mass spectrometry (single quadrupole) has been developed for the determination of 12 polybrominated diphenyl ethers (PBDEs), 26 polychlorinated biphenyls (PCBs), two organochlorine compounds (OCs) (hexachlorobenzene and octachlorostyrene) and two brominated phenols (pentabromophenol, and tetrabromobisphenol-A (TBBP-A)). The analytes were extracted using a sorbent of polystyrene-divinylbenzene and an additional clean-up was performed on a sulphuric acid-silica column to remove lipids. The method has been validated by spiking horse serum at five levels. The mean accuracy given as recovery relative to internal standards was 95%, 99%, 93% and 109% for the PBDEs PCBs, OCs and brominated phenols, respectively. The mean repeatability given as RSDs was respectively 6.9%, 8.7%, 7.5% and 15%. Estimated limits of detection (S/N=3) were in the range 0.2-1.8 pg/g serum for the PBDEs and phenols, and from 0.1 pg/g to 56 pg/g serum for the PCBs and OCs. The validated method has been used to investigate the levels of PBDEs and PCBs in 21 pooled serum samples from the general Norwegian population. In serum from men (age 40-50 years) the sum of seven PBDE congeners (IUPAC No. 28, 47, 99, 100, 153, 154 and 183) increased from 1977 (0.5 ng/g lipids) to 1998 (4.8 ng/g lipids). From 1999 to 2003 the concentration of PBDEs seems to have stabilised. On the other hand, the sum of five PCBs (IUPAC No. 101, 118, 138, 153 and 180) in these samples decreased steadily from 1977 (666 ng/g lipids) to 2003 (176 ng/g lipids). Tetrabromobisphenol-A and BDE-209 were detected in almost all samples, but no similar temporal trends to that seen for the PBDEs were observed for these compounds, which might be due to the short half-lives of these brominated flame retardants (FR) in humans. PMID:17023223

  8. Semivolatile organic (GC-MS) and inorganic analyses of groundwater samples during the hydrous pyrolysis/oxidation (HPO) field test in Visalia, CA, 1997

    SciTech Connect

    Chiarappa, M; Knauss, K G; Kumamoto, G; Leif, R N; Newmark, R L

    1998-02-05

    Hydrous pyrolysis/oxidation (HPO) is a novel, in situ, thermal-remediation technology that uses hot, oxygenated groundwater to completely oxidize a wide range of organic pollutants. A field demonstration of HPO was performed during the summer of 1997 at the Southern California Edison Pole Yard in Visalia, California, a site contaminated with creosote. The goal of the field experiment was to confirm the success of HPO under field remediation conditions. The groundwater was heated by steam injections, and oxygen was added by co-injection of compressed air. The progress of the HPO remediation process was evaluated by monitoring groundwater from multiple wells for dissolved oxygen, dissolved inorganic carbon, and dissolved organic contaminant levels. Analyses of groundwater chemistry allowed us to measure the concentrations of creosote components and to identify oxygenated intermediates produced by the HPO treatment. Dissolved organic carbon levels increased in response to steam injections because of the enhanced dissolution and mobilization of the creosote into the heated groundwater. Elevated concentrations of phenols and benzoic acid were measured in wells affected by the steam injections. Concentrations of other oxygenated compounds (i.e., fluorenone, anthrone, and 9,10-anthracenedione) increased in response to the steam injections. The production of these partially oxidized compounds is consistent with the aqueous-phase HPO reactions of creosote. Additional changes in the groundwater in response to steam injection were also consistent with the groundwater HPO chemistry. A drop in dissolved oxygen was observed in the aquifer targeted for the steam injections, and isotope shifts in the dissolved inorganic pool reflected the input of oxidized carbon derived from the creosote carbon.

  9. 21 CFR 864.5200 - Automated cell counter.

    Code of Federal Regulations, 2010 CFR

    2010-04-01

    ... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Automated cell counter. 864.5200 Section 864.5200....5200 Automated cell counter. (a) Identification. An automated cell counter is a fully-automated or semi-automated device used to count red blood cells, white blood cells, or blood platelets using a sample of...

  10. 21 CFR 864.5200 - Automated cell counter.

    Code of Federal Regulations, 2012 CFR

    2012-04-01

    ... 21 Food and Drugs 8 2012-04-01 2012-04-01 false Automated cell counter. 864.5200 Section 864.5200....5200 Automated cell counter. (a) Identification. An automated cell counter is a fully-automated or semi-automated device used to count red blood cells, white blood cells, or blood platelets using a sample of...

  11. 21 CFR 864.5200 - Automated cell counter.

    Code of Federal Regulations, 2013 CFR

    2013-04-01

    ... 21 Food and Drugs 8 2013-04-01 2013-04-01 false Automated cell counter. 864.5200 Section 864.5200....5200 Automated cell counter. (a) Identification. An automated cell counter is a fully-automated or semi-automated device used to count red blood cells, white blood cells, or blood platelets using a sample of...

  12. 21 CFR 864.5200 - Automated cell counter.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 21 Food and Drugs 8 2011-04-01 2011-04-01 false Automated cell counter. 864.5200 Section 864.5200....5200 Automated cell counter. (a) Identification. An automated cell counter is a fully-automated or semi-automated device used to count red blood cells, white blood cells, or blood platelets using a sample of...

  13. 21 CFR 864.5200 - Automated cell counter.

    Code of Federal Regulations, 2014 CFR

    2014-04-01

    ... 21 Food and Drugs 8 2014-04-01 2014-04-01 false Automated cell counter. 864.5200 Section 864.5200....5200 Automated cell counter. (a) Identification. An automated cell counter is a fully-automated or semi-automated device used to count red blood cells, white blood cells, or blood platelets using a sample of...

  14. Groundwater Science

    NASA Astrophysics Data System (ADS)

    McKenna, Sean A.

    A good introductory groundwater textbook must strike a delicate balance in presenting the basics of the physical, chemical, geological, mathematical, and engineering aspects of the groundwater field without being too lengthy or overly detailed. Charles Fitts states that his motivation for writing Groundwater Science was to be able to “…teach concepts and quantitative analyses with a clear, lean, but thorough book.” He has succeeded in striking this balance of having just the right amount of information, and has met his goals of producing a concise book that can be used to teach the concepts and analyses necessary for the study of groundwater.Overall, Groundwater Science would serve well as the text for an introductory groundwater course at the college senior or first-year graduate level. The author and the publisher have made excellent use of two-color, gray and blue-scale images throughout the book. The graphics are crisp and explanatory. Data sets needed to work some of the problems in the book are available as text files from its Web site (http://www.academicpress.com/groundwater). I found these files to be complete and easy to understand. The references are up to date and point the reader to additional information across a wide range of groundwater issues, and also provide a number of examples to illustrate different points made in the book.

  15. Hydrogeochemical variations in groundwater periodically sampled at El Hierro (Canary Islands) and its relationships with the recent eruptive and unrest periods

    NASA Astrophysics Data System (ADS)

    Luengo-Oroz, Natividad; Torres, Pedro A.; Moure, David; D'Alessandro, Walter

    2014-05-01

    On 10 October 2011, a submarine volcanic eruption started 2 km south El Hierro Island (Canary Islands, Spain). Since July 2011 a dense multiparametric monitoring network was deployed all over the island by Instituto Geográfico Nacional (IGN). By the time the eruption started, almost 10000 earthquakes had been located and the deformation analyses showed a maximum deformation of more than 5 cm. After the end of the submarine eruption and up to now, several volcanic unrest processes have taken place in the island. The most relevant ones started on June 2012 and March 2013. Each of these periods has been evidenced by intense seismicity and ground deformation. In the framework of this volcanic surveillance program, the IGN team started to periodically sample five groundwater sampling sites. Some parameters have been determined directly in the field (temperature, pH, electric conductivity and alkalinity) and collected samples have been analysed in the laboratory for major (Na, K, NH4, Ca, Mg, SO4, Cl, HCO3, CO3, NO3, NO2, PO4, SiO2, Br, F) and trace elements (Be, Al, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Se, Mo, Ag, Cd, Ba, Hg, Tl, Pb, Th, U) contents. In a few cases samples for the chemical analysis of dissolved gases and for the determination of the isotopic composition of He have been collected at two of the sites. Significant increases in alkalinity have been recorded in all sampling sites correlated both to the eruptive period and also to the following unrest episodes. Such increases are probably related to the dissolution of magmatic CO2 exsolved from the rising magma batches. The magmatic contribution can be confirmed by the isotopic composition of dissolved He showing values in the range from 7.76 to 8.91 R/Ra. Since July 2011, only one important CO2 soil degassing anomaly has been detected. This anomalous flux (620 g/m2.d) was measured in a small area (0.36 km2) before the beginning of the submarine eruption and has not been detected again after the eruption onset

  16. Applications of Groundwater Helium

    USGS Publications Warehouse

    Kulongoski, Justin T.; Hilton, David R.

    2011-01-01

    Helium abundance and isotope variations have widespread application in groundwater-related studies. This stems from the inert nature of this noble gas and the fact that its two isotopes ? helium-3 and helium-4 ? have distinct origins and vary widely in different terrestrial reservoirs. These attributes allow He concentrations and 3He/4He isotope ratios to be used to recognize and quantify the influence of a number of potential contributors to the total He budget of a groundwater sample. These are atmospheric components, such as air-equilibrated and air-entrained He, as well as terrigenic components, including in situ (aquifer) He, deep crustal and/or mantle He and tritiogenic 3He. Each of these components can be exploited to reveal information on a number of topics, from groundwater chronology, through degassing of the Earth?s crust to the role of faults in the transfer of mantle-derived volatiles to the surface. In this review, we present a guide to how groundwater He is collected from aquifer systems and quantitatively measured in the laboratory. We then illustrate the approach of resolving the measured He characteristics into its component structures using assumptions of endmember compositions. This is followed by a discussion of the application of groundwater He to the types of topics mentioned above using case studies from aquifers in California and Australia. Finally, we present possible future research directions involving dissolved He in groundwater.

  17. Computers bail out groundwater cleanup

    SciTech Connect

    Harte, R.

    1997-01-01

    Using computers to automate groundwater remediation systems can increase efficiency and improve record keeping. This article uses an example of leakage of petroleum products from a petroleum storage facility which is mitigated within a 17 acre area. The Mistic computer center is a stand-alone processing unit that receives status inputs from each piece of equipment, interprets the condition of the system and then instructs the equipment how to respond. 1 fig.

  18. Automation or De-automation

    NASA Astrophysics Data System (ADS)

    Gorlach, Igor; Wessel, Oliver

    2008-09-01

    In the global automotive industry, for decades, vehicle manufacturers have continually increased the level of automation of production systems in order to be competitive. However, there is a new trend to decrease the level of automation, especially in final car assembly, for reasons of economy and flexibility. In this research, the final car assembly lines at three production sites of Volkswagen are analysed in order to determine the best level of automation for each, in terms of manufacturing costs, productivity, quality and flexibility. The case study is based on the methodology proposed by the Fraunhofer Institute. The results of the analysis indicate that fully automated assembly systems are not necessarily the best option in terms of cost, productivity and quality combined, which is attributed to high complexity of final car assembly systems; some de-automation is therefore recommended. On the other hand, the analysis shows that low automation can result in poor product quality due to reasons related to plant location, such as inadequate workers' skills, motivation, etc. Hence, the automation strategy should be formulated on the basis of analysis of all relevant aspects of the manufacturing process, such as costs, quality, productivity and flexibility in relation to the local context. A more balanced combination of automated and manual assembly operations provides better utilisation of equipment, reduces production costs and improves throughput.

  19. Comparison of no-purge and pumped sampling methods for monitoring concentrations of ordnance-related compounds in groundwater, Camp Edwards, Massachusetts Military Reservation, Cape Cod, Massachusetts, 2009-2010

    USGS Publications Warehouse

    Savoie, Jennifer G.; LeBlanc, Denis R.

    2012-01-01

    Field tests were conducted near the Impact Area at Camp Edwards on the Massachusetts Military Reservation, Cape Cod, Massachusetts, to determine the utility of no-purge groundwater sampling for monitoring concentrations of ordnance-related explosive compounds and perchlorate in the sand and gravel aquifer. The no-purge methods included (1) a diffusion sampler constructed of rigid porous polyethylene, (2) a diffusion sampler constructed of regenerated-cellulose membrane, and (3) a tubular grab sampler (bailer) constructed of polyethylene film. In samples from 36 monitoring wells, concentrations of perchlorate (ClO4-), hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX), and octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine (HMX), the major contaminants of concern in the Impact Area, in the no-purge samples were compared to concentrations of these compounds in samples collected by low-flow pumped sampling with dedicated bladder pumps. The monitoring wells are constructed of 2- and 2.5-inch-diameter polyvinyl chloride pipe and have approximately 5- to 10-foot-long slotted screens. The no-purge samplers were left in place for 13-64 days to ensure that ambient groundwater flow had flushed the well screen and concentrations in the screen represented water in the adjacent formation. The sampling methods were compared first in six monitoring wells. Concentrations of ClO4-, RDX, and HMX in water samples collected by the three no-purge sampling methods and low-flow pumped sampling were in close agreement for all six monitoring wells. There is no evidence of a systematic bias in the concentration differences among the methods on the basis of type of sampling device, type of contaminant, or order in which the no-purge samplers were tested. A subsequent examination of vertical variations in concentrations of ClO4- in the 10-foot-long screens of six wells by using rigid porous polyethylene diffusion samplers indicated that concentrations in a given well varied by less than 15 percent

  20. Differential proteomic analysis of mouse macrophages exposed to adsorbate-loaded heavy fuel oil derived combustion particles using an automated sample-preparation workflow.

    PubMed

    Kanashova, Tamara; Popp, Oliver; Orasche, Jürgen; Karg, Erwin; Harndorf, Horst; Stengel, Benjamin; Sklorz, Martin; Streibel, Thorsten; Zimmermann, Ralf; Dittmar, Gunnar

    2015-08-01

    Ship diesel combustion particles are known to cause broad cytotoxic effects and thereby strongly impact human health. Particles from heavy fuel oil (HFO) operated ships are considered as particularly dangerous. However, little is known about the relevant components of the ship emission particles. In particular, it is interesting to know if the particle cores, consisting of soot and metal oxides, or the adsorbate layers, consisting of semi- and low-volatile organic compounds and salts, are more relevant. We therefore sought to relate the adsorbates and the core composition of HFO combustion particles to the early cellular responses, allowing for the development of measures that counteract their detrimental effects. Hence, the semi-volatile coating of HFO-operated ship diesel engine particles was removed by stepwise thermal stripping using different temperatures. RAW 264.7 macrophages were exposed to native and thermally stripped particles in submersed culture. Proteomic changes were monitored by two different quantitative mass spectrometry approaches, stable isotope labeling by amino acids in cell culture (SILAC) and dimethyl labeling. Our data revealed that cells reacted differently to native or stripped HFO combustion particles. Cells exposed to thermally stripped particles showed a very differential reaction with respect to the composition of the individual chemical load of the particle. The cellular reactions of the HFO particles included reaction to oxidative stress, reorganization of the cytoskeleton and changes in endocytosis. Cells exposed to the 280 °C treated particles showed an induction of RNA-related processes, a number of mitochondria-associated processes as well as DNA damage response, while the exposure to 580 °C treated HFO particles mainly induced the regulation of intracellular transport. In summary, our analysis based on a highly reproducible automated proteomic sample-preparation procedure shows a diverse cellular response, depending on the

  1. Process automation

    SciTech Connect

    Moser, D.R.

    1986-01-01

    Process automation technology has been pursued in the chemical processing industries and to a very limited extent in nuclear fuel reprocessing. Its effective use has been restricted in the past by the lack of diverse and reliable process instrumentation and the unavailability of sophisticated software designed for process control. The Integrated Equipment Test (IET) facility was developed by the Consolidated Fuel Reprocessing Program (CFRP) in part to demonstrate new concepts for control of advanced nuclear fuel reprocessing plants. A demonstration of fuel reprocessing equipment automation using advanced instrumentation and a modern, microprocessor-based control system is nearing completion in the facility. This facility provides for the synergistic testing of all chemical process features of a prototypical fuel reprocessing plant that can be attained with unirradiated uranium-bearing feed materials. The unique equipment and mission of the IET facility make it an ideal test bed for automation studies. This effort will provide for the demonstration of the plant automation concept and for the development of techniques for similar applications in a full-scale plant. A set of preliminary recommendations for implementing process automation has been compiled. Some of these concepts are not generally recognized or accepted. The automation work now under way in the IET facility should be useful to others in helping avoid costly mistakes because of the underutilization or misapplication of process automation. 6 figs.

  2. Groundwater quality data in 15 GAMA study units: results from the 2006–10 Initial sampling and the 2009–13 resampling of wells, California GAMA Priority Basin Project

    USGS Publications Warehouse

    Kent, Robert

    2015-01-01

    Most constituents that were detected in groundwater samples from the trend wells were found at concentrations less than drinking-water benchmarks. Two volatile organic compounds (VOCs)—tetrachloroethene and trichloroethene—were detected in samples from one or more wells at concentrations greater than their health-based benchmarks, and three VOCs—chloroform, tetrachloroethene, and trichloroethene—were detected in at least 10 percent of the trend-well samples from the initial sampling period and the later trend sampling period. No pesticides were detected at concentrations near or greater than their health-based benchmarks. Three pesticide constituents—atrazine, deethylatrazine, and simazine—were detected in more than 10 percent of the trend-well samples in both sampling periods. Perchlorate, a constituent of special interest, was detected at a concentration greater than its health-based benchmark in samples from one trend well in the initial sampling and trend sampling periods, and in an additional trend well sample only in the trend sampling period. Most detections of nutrients, major and minor ions, and trace elements in samples from trend wells were less than health-based benchmarks in both sampling periods. Exceptions included nitrate, fluoride, arsenic, boron, molybdenum, strontium, and uranium; these were all detected at concentrations greater than their health-based benchmarks in at least one well sample in both sampling periods. Lead and vanadium were detected above their health-based benchmarks in one sample each collected in the initial sampling period only. The isotopic ratios of oxygen and hydrogen in water and the activities of tritium and carbon-14 generally changed little between sampling periods.

  3. Bethlehem landfill groundwater containment monitoring

    SciTech Connect

    Hasemeier, R.F.; Knight, M.A.

    1997-12-31

    The groundwater containment measures at the City of Bethlehem Landfill near Bethlehem, Pennsylvania include a 13-well pumping system; capping of closed landfill areas; a new landfill liner to decrease recharge; containment of a degraded aquifer; and substantial data reporting requirements to demonstrate effectiveness of the pump and treat system. The containment system functions as a barrier to downgradient contaminant migration. Reduction of groundwater recharge creates a very dynamic abatement system requiring monitoring. Performance monitoring of portions of the groundwater containment is continuous and accomplished through a centralized computer interface. Automated system control and data management reduces the human attention required to maintain a constant hydrodynamic barrier. Abatement system operational data is combined with other site monitoring data, including well water levels, water chemistry data, tonnage reports, and operational data, to fulfill permit reporting requirements for performance.

  4. Groundwater exposed

    NASA Astrophysics Data System (ADS)

    2016-02-01

    Groundwater flow meddles with hydrological, environmental and geological processes. As water scarcity issues mount for people living above ground, the vast stores of freshwater in the subsurface require research attention.

  5. Groundwater-Seepage Meter

    NASA Technical Reports Server (NTRS)

    Walthall, Harry G.; Reay, William G.

    1993-01-01

    Instrument measures seepage of groundwater into inland or coastal body of water. Positioned at depth as great as 40 meters, and measures flow at low rate and low pressure differential. Auxiliary pressure meter provides data for correlation of flow of groundwater with tides and sea states. Seepage meter operates independently for several weeks. Its sampling rate adjusted to suit hydrologic conditions; to measure more frequently when conditions changing rapidly. Used in water-quality management and for biological and geological research. Potential industrial uses include measurement of seepage of caustic and corrosive liquids.

  6. Automation pilot

    NASA Technical Reports Server (NTRS)

    1983-01-01

    An important concept of the Action Information Management System (AIMS) approach is to evaluate office automation technology in the context of hands on use by technical program managers in the conduct of human acceptance difficulties which may accompany the transition to a significantly changing work environment. The improved productivity and communications which result from application of office automation technology are already well established for general office environments, but benefits unique to NASA are anticipated and these will be explored in detail.

  7. Design and Operation of a Borehole Straddle Packer for Ground-Water Sampling and Hydraulic Testing of Discrete Intervals at U.S. Air Force Plant 6, Marietta, Georgia

    USGS Publications Warehouse

    Holloway, Owen G.; Waddell, Jonathan P.

    2008-01-01

    A borehole straddle packer was developed and tested by the U.S. Geological Survey to characterize the vertical distribution of contaminants, head, and hydraulic properties in open-borehole wells as part of an ongoing investigation of ground-water contamination at U.S. Air Force Plant 6 (AFP6) in Marietta, Georgia. To better understand contaminant fate and transport in a crystalline bedrock setting and to support remedial activities at AFP6, numerous wells have been constructed that include long open-hole intervals in the crystalline bedrock. These wells can include several discontinuities that produce water, which may contain contaminants. Because of the complexity of ground-water flow and contaminant movement in the crystalline bedrock, it is important to characterize the hydraulic and water-quality characteristics of discrete intervals in these wells. The straddle packer facilitates ground-water sampling and hydraulic testing of discrete intervals, and delivery of fluids including tracer suites and remedial agents into these discontinuities. The straddle packer consists of two inflatable packers, a dual-pump system, a pressure-sensing system, and an aqueous injection system. Tests were conducted to assess the accuracy of the pressure-sensing systems, and water samples were collected for analysis of volatile organic compound (VOCs) concentrations. Pressure-transducer readings matched computed water-column height, with a coefficient of determination of greater than 0.99. The straddle packer incorporates both an air-driven piston pump and a variable-frequency, electronic, submersible pump. Only slight differences were observed between VOC concentrations in samples collected using the two different types of sampling pumps during two sampling events in July and August 2005. A test conducted to assess the effect of stagnation on VOC concentrations in water trapped in the system's pump-tubing reel showed that concentrations were not affected. A comparison was conducted

  8. Automation of analytical isotachophoresis

    NASA Technical Reports Server (NTRS)

    Thormann, Wolfgang

    1985-01-01

    The basic features of automation of analytical isotachophoresis (ITP) are reviewed. Experimental setups consisting of narrow bore tubes which are self-stabilized against thermal convection are considered. Sample detection in free solution is discussed, listing the detector systems presently used or expected to be of potential use in the near future. The combination of a universal detector measuring the evolution of ITP zone structures with detector systems specific to desired components is proposed as a concept of an automated chemical analyzer based on ITP. Possible miniaturization of such an instrument by means of microlithographic techniques is discussed.

  9. A Chip-Capillary Hybrid Device for Automated Transfer of Sample Pre-Separated by Capillary Isoelectric Focusing to Parallel Capillary Gel Electrophoresis for Two-Dimensional Protein Separation

    PubMed Central

    Lu, Joann J.; Wang, Shili; Li, Guanbin; Wang, Wei; Pu, Qiaosheng; Liu, Shaorong

    2012-01-01

    In this report, we introduce a chip-capillary hybrid device to integrate capillary isoelectric focusing (CIEF) with parallel capillary sodium dodecyl sulfate – polyacrylamide gel electrophoresis (SDS-PAGE) or capillary gel electrophoresis (CGE) toward automating two-dimensional (2D) protein separations. The hybrid device consists of three chips that are butted together. The middle chip can be moved between two positions to re-route the fluidic paths, which enables the performance of CIEF and injection of proteins partially resolved by CIEF to CGE capillaries for parallel CGE separations in a continuous and automated fashion. Capillaries are attached to the other two chips to facilitate CIEF and CGE separations and to extend the effective lengths of CGE columns. Specifically, we illustrate the working principle of the hybrid device, develop protocols for producing and preparing the hybrid device, and demonstrate the feasibility of using this hybrid device for automated injection of CIEF-separated sample to parallel CGE for 2D protein separations. Potentials and problems associated with the hybrid device are also discussed. PMID:22830584

  10. Groundwater quality and the relation between pH values and occurrence of trace elements and radionuclides in water samples collected from private wells in part of the Kickapoo Tribe of Oklahoma Jurisdictional Area, central Oklahoma, 2011

    USGS Publications Warehouse

    Becker, Carol J.

    2013-01-01

    From 1999 to 2007, the Indian Health Service reported that gross alpha-particle activities and concentrations of uranium exceeded the Maximum Contaminant Levels for public drinking-water supplies in water samples from six private wells and two test wells in a rural residential neighborhood in the Kickapoo Tribe of Oklahoma Jurisdictional Area, in central Oklahoma. Residents in this rural area use groundwater from Quaternary-aged terrace deposits and the Permian-aged Garber-Wellington aquifer for domestic purposes. Uranium and other trace elements, specifically arsenic, chromium, and selenium, occur naturally in rocks composing the Garber-Wellington aquifer and in low concentrations in groundwater throughout its extent. Previous studies have shown that pH values above 8.0 from cation-exchange processes in the aquifer cause selected metals such as arsenic, chromium, selenium, and uranium to desorb (if present) from mineral surfaces and become mobile in water. On the basis of this information, the U.S. Geological Survey, in cooperation with the Kickapoo Tribe of Oklahoma, conducted a study in 2011 to describe the occurrence of selected trace elements and radionuclides in groundwater and to determine if pH could be used as a surrogate for laboratory analysis to quickly and inexpensively identify wells that might contain high concentrations of uranium and other trace elements. The pH and specific conductance of groundwater from 59 private wells were measured in the field in an area of about 18 square miles in Lincoln and Pottawatomie Counties. Twenty of the 59 wells also were sampled for dissolved concentrations of major ions, trace elements, gross alpha-particle and gross beta-particle activities, uranium, radium-226, radium-228, and radon-222 gas. Arsenic concentrations exceeded the Maximum Contaminant Level of 10 micrograms per liter in one sample having a concentration of 24.7 micrograms per liter. Selenium concentrations exceeded the Maximum Contaminant Level of 50

  11. Habitat automation

    NASA Technical Reports Server (NTRS)

    Swab, Rodney E.

    1992-01-01

    A habitat, on either the surface of the Moon or Mars, will be designed and built with the proven technologies of that day. These technologies will be mature and readily available to the habitat designer. We believe an acceleration of the normal pace of automation would allow a habitat to be safer and more easily maintained than would be the case otherwise. This document examines the operation of a habitat and describes elements of that operation which may benefit from an increased use of automation. Research topics within the automation realm are then defined and discussed with respect to the role they can have in the design of the habitat. Problems associated with the integration of advanced technologies into real-world projects at NASA are also addressed.

  12. Glycol Ethers As Groundwater Contaminants

    NASA Astrophysics Data System (ADS)

    Ross, Benjamin; Johannson, Gunnar; Foster, Gregory D.; Eckel, William P.

    1992-01-01

    Ether derivatives of dihydroxy alcohols, which are formed from ethylene or propylene, comprise an important group of groundwater contaminants known as glycol ethers. Compounds in this group are used as solvents, cleaning agents, and emulsifiers in many chemical products and manufacturing operations. Glycol ethers have been associated with a variety of toxic effects, and some compounds in the group are relatively potent teratogens. The limited information available suggests that glycol ethers are contaminants in groundwater, especially in anaerobic plumes emanating from disposal of mixed industrial and household waste. Most methods used to analyze groundwater samples cannot adequately detect μg/? (ppb) concentrations of glycol ethers, and the existing methods perform worst for the most widely used and toxic species. A new method capable of analyzing μg/? concentrations of glycol ethers was recently developed, and its use is recommended for groundwater samples where glycol ethers are likely to be present.

  13. Groundwater Screen

    Energy Science and Technology Software Center (ESTSC)

    1993-11-09

    GWSCREEN was developed for assessment of the groundwater pathway from leaching of radioactive and non radioactive substances from surface or buried sources and release to percolation ponds. The code calculates the limiting soil concentration or effluent release concentration such that, after leaching and transport to the aquifer, regulatory contaminant levels in groundwater are not exceeded. The code uses a mass conservation approach to model three processes: Contaminant release from a source volume, contaminant transport inmore » the unsaturated zone, and contaminant transport in the saturated zone. The source model considers the sorptive properties and solubility of the contaminant. Transport in the unsaturated zone is described by a plug flow model. Transport in the saturated zone is calculated with a semi-analytical solution to the advection dispersion equation in groundwater. Concentration as a function of time at a user specified receptor point and maximum concentration averaged over the exposure interval are also calculated. In addition, the code calculates transport and impacts of radioactive progeny. Input to GWSCREEN is through one, free format ASCII file. This code was designed for assessment and screening of the groundwater pathway when field data is limited. It was not intended to be a predictive tool.« less

  14. Development of an Automated Remedy Performance Evaluation Program - 13622

    SciTech Connect

    Tonkin, Matthew J.; Kennel, Jonathan; Biebesheimer, Frederick; Dooley, David

    2013-07-01

    Performance monitoring is a vital element of groundwater remediation. Unfortunately, the enormous efforts and costs that are expended procuring, managing, processing and storing monitoring data are often not subject to correspondingly rigorous evaluation. This is despite the fact that many steps in the process are predictable and are repeated many times over the remedy life cycle. At the Department of Energy (DOE) Hanford Site, a program is underway to automate many of these steps - processing, formatting any analyzing large volumes of heterogeneous data associated with the operation of several groundwater pump-and-treat (P and T) and in-situ remedies. The Automated Remedy Performance Evaluation Program (ARPEP) was developed from a work-flow process designed to deliver (a) monthly data summaries and preliminary analysis, (b) quarterly performance assessments, and (c) annual roll-up analyses that detect changes in long-term monitoring datasets and support remedy optimization. The intent of the ARPEP is to provide detailed, systematic and traceable data summaries, depictions and analyses that can be used by project scientists to complete their evaluation of remedy performance. The ARPEP work-flow was formalized following extensive review of applicable guidance, regulation and industry standards. The ARPEP incorporates disparate data types collected over different frequencies, such as water levels and pumping rates recorded every minute, and groundwater sample results obtained on quarterly, annual or irregular intervals. The data are processed, reduced to frequencies suitable for assessment, and combined in various ways leading to performance indicators such as (a) pumped well capacities and system downtime that reflect operational performance; (b) hydraulic gradients and areas of hydraulic containment that reflect hydraulic performance; and (c) time-series (longitudinal) and geo-statistical (spatial) trend analyses that reflect progress toward attainment of Remedial

  15. Automating Finance

    ERIC Educational Resources Information Center

    Moore, John

    2007-01-01

    In past years, higher education's financial management side has been riddled with manual processes and aging mainframe applications. This article discusses schools which had taken advantage of an array of technologies that automate billing, payment processing, and refund processing in the case of overpayment. The investments are well worth it:…

  16. Automated dispenser

    SciTech Connect

    Hollen, R.M.; Stalnaker, N.D.

    1989-04-06

    An automated dispenser having a conventional pipette attached to an actuating cylinder through a flexible cable for delivering precise quantities of a liquid through commands from remotely located computer software. The travel of the flexible cable is controlled by adjustable stops and a locking shaft. The pipette can be positioned manually or by the hands of a robot. 1 fig.

  17. AUTOMATED INADVERTENT INTRUDER APPLICATION

    SciTech Connect

    Koffman, L; Patricia Lee, P; Jim Cook, J; Elmer Wilhite, E

    2007-05-29

    results. The application was extended to calculate full decay chains for a given parent so that an intruder calculation could be performed without any input from transport calculations, i.e. the intruder analysis was decoupled from groundwater analysis. Once this full decay chain capability was in place, the application was extended to perform a transient calculation of the dose to an intruder over a specified time range, from which the maximum dose in time was determined. Use of the transient calculation to find the maximum dose in time was a significant step forward in automating and simplifying the inadvertent intruder analysis.

  18. INTEC Groundwater Monitoring Report 2006

    SciTech Connect

    J. R. Forbes S. L. Ansley M. Leecaster

    2007-02-01

    This report summarizes 2006 perched water and groundwater monitoring activities at the Idaho Nuclear Technology and Engineering Center (INTEC) located at the Idaho National Laboratory (INL). During 2006, groundwater samples were collected from a total of 22 Snake River Plain Aquifer (SRPA) monitoring wells, plus six aquifer wells sampled for the Idaho CERCLA Disposal Facility (ICDF) monitoring program. In addition, perched water samples were collected from 21 perched wells and 19 suction lysimeters. Groundwater and perched water samples were analyzed for a suite of radionuclides and inorganic constituents. Laboratory results in this report are compared to drinking water maximum contaminant levels (MCLs). Such comparison is for reference only and it should be noted that the Operable Unit 3-13 Record of Decision does not require that perched water comply with drinking water standards.

  19. Groundwater workshops

    NASA Astrophysics Data System (ADS)

    The Interstate Conference on Water Policy has released an Executive Report of the 1989 Ground Water Information Management Workshops. The report summarizes workgroup findings and recommendations for action as identified at the four workshops conducted in the winter and spring of 1989 in Little Rock, Ark.; Sacramento, Calif.; Harrisburg, Pa.; and Omaha, Nebr. The workshops, cosponsored by ICWP and the U.S. Geological Survey, attracted over 200 participants from local, state, and federal government, academia, and the private sector.The two primary objectives of the workshop series were to provide participants with information about groundwater data management initiatives at all levels of government, and to elicit information and ideas from participants about improving data management and exchange. The report states that although the individual workshops reflected regional concerns and experiences, collectively they provide a solid foundation for developing a national perspective on groundwater information management needs.

  20. Automating the analytical laboratory via the Chemical Analysis Automation paradigm

    SciTech Connect

    Hollen, R.; Rzeszutko, C.

    1997-10-01

    To address the need for standardization within the analytical chemistry laboratories of the nation, the Chemical Analysis Automation (CAA) program within the US Department of Energy, Office of Science and Technology`s Robotic Technology Development Program is developing laboratory sample analysis systems that will automate the environmental chemical laboratories. The current laboratory automation paradigm consists of islands-of-automation that do not integrate into a system architecture. Thus, today the chemist must perform most aspects of environmental analysis manually using instrumentation that generally cannot communicate with other devices in the laboratory. CAA is working towards a standardized and modular approach to laboratory automation based upon the Standard Analysis Method (SAM) architecture. Each SAM system automates a complete chemical method. The building block of a SAM is known as the Standard Laboratory Module (SLM). The SLM, either hardware or software, automates a subprotocol of an analysis method and can operate as a standalone or as a unit within a SAM. The CAA concept allows the chemist to easily assemble an automated analysis system, from sample extraction through data interpretation, using standardized SLMs without the worry of hardware or software incompatibility or the necessity of generating complicated control programs. A Task Sequence Controller (TSC) software program schedules and monitors the individual tasks to be performed by each SLM configured within a SAM. The chemist interfaces with the operation of the TSC through the Human Computer Interface (HCI), a logical, icon-driven graphical user interface. The CAA paradigm has successfully been applied in automating EPA SW-846 Methods 3541/3620/8081 for the analysis of PCBs in a soil matrix utilizing commercially available equipment in tandem with SLMs constructed by CAA.

  1. Automated Microbial Metabolism Laboratory

    NASA Technical Reports Server (NTRS)

    1973-01-01

    Development of the automated microbial metabolism laboratory (AMML) concept is reported. The focus of effort of AMML was on the advanced labeled release experiment. Labeled substrates, inhibitors, and temperatures were investigated to establish a comparative biochemical profile. Profiles at three time intervals on soil and pure cultures of bacteria isolated from soil were prepared to establish a complete library. The development of a strategy for the return of a soil sample from Mars is also reported.

  2. Automated determination of the stable carbon isotopic composition (δ13C) of total dissolved inorganic carbon (DIC) and total nonpurgeable dissolved organic carbon (DOC) in aqueous samples: RSIL lab codes 1851 and 1852

    USGS Publications Warehouse

    Révész, Kinga M.; Doctor, Daniel H.

    2014-01-01

    The purposes of the Reston Stable Isotope Laboratory (RSIL) lab codes 1851 and 1852 are to determine the total carbon mass and the ratio of the stable isotopes of carbon (δ13C) for total dissolved inorganic carbon (DIC, lab code 1851) and total nonpurgeable dissolved organic carbon (DOC, lab code 1852) in aqueous samples. The analysis procedure is automated according to a method that utilizes a total carbon analyzer as a peripheral sample preparation device for analysis of carbon dioxide (CO2) gas by a continuous-flow isotope ratio mass spectrometer (CF-IRMS). The carbon analyzer produces CO2 and determines the carbon mass in parts per million (ppm) of DIC and DOC in each sample separately, and the CF-IRMS determines the carbon isotope ratio of the produced CO2. This configuration provides a fully automated analysis of total carbon mass and δ13C with no operator intervention, additional sample preparation, or other manual analysis. To determine the DIC, the carbon analyzer transfers a specified sample volume to a heated (70 °C) reaction vessel with a preprogrammed volume of 10% phosphoric acid (H3PO4), which allows the carbonate and bicarbonate species in the sample to dissociate to CO2. The CO2 from the reacted sample is subsequently purged with a flow of helium gas that sweeps the CO2 through an infrared CO2 detector and quantifies the CO2. The CO2 is then carried through a high-temperature (650 °C) scrubber reactor, a series of water traps, and ultimately to the inlet of the mass spectrometer. For the analysis of total dissolved organic carbon, the carbon analyzer performs a second step on the sample in the heated reaction vessel during which a preprogrammed volume of sodium persulfate (Na2S2O8) is added, and the hydroxyl radicals oxidize the organics to CO2. Samples containing 2 ppm to 30,000 ppm of carbon are analyzed. The precision of the carbon isotope analysis is within 0.3 per mill for DIC, and within 0.5 per mill for DOC.

  3. High-throughput method of dioxin analysis in aqueous samples using consecutive solid phase extraction steps with the new C18 Ultraflow™ pressurized liquid extraction and automated clean-up.

    PubMed

    Youn, Yeu-Young; Park, Deok Hie; Lee, Yeon Hwa; Lim, Young Hee; Cho, Hye Sung

    2015-01-01

    A high-throughput analytical method has been developed for the determination of seventeen 2,3,7,8-substituted congeners of polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs) in aqueous samples. A recently introduced octadecyl (C18) disk for semi-automated solid-phase extraction of PCDD/Fs in water samples with a high level of particulate material has been tested for the analysis of dioxins. A new type of C18 disk specially designed for the analysis of hexane extractable material (HEM), but never previously reported for use in PCDD/Fs analysis. This kind of disk allows a higher filtration flow, and therefore the time of analysis is reduced. The solid-phase extraction technique is used to change samples from liquid to solid, and therefore pressurized liquid extraction (PLE) can be used in the pre-treatment. In order to achieve efficient purification, extracts from the PLE are purified using an automated Power-prep system with disposable silica, alumina, and carbon columns. Quantitative analyses of PCDD/Fs were performed by GC-HRMS using multi-ion detection (MID) mode. The method was successfully applied to the analysis of water samples from the wastewater treatment system of a vinyl chloride monomer plant. The entire procedure is in agreement with EPA1613 recommendations regarding the blank control, MDLs (method detection limits), accuracy, and precision. The high-throughput method not only meets the requirements of international standards, but also shortens the required analysis time from 2 weeks to 3d. PMID:25112208

  4. GROUND WATER SAMPLING ISSUES

    EPA Science Inventory

    Obtaining representative ground water samples is important for site assessment and
    remedial performance monitoring objectives. Issues which must be considered prior to initiating a ground-water monitoring program include defining monitoring goals and objectives, sampling point...

  5. Determination of nine benzotriazole UV stabilizers in environmental water samples by automated on-line solid phase extraction coupled with high-performance liquid chromatography-tandem mass spectrometry.

    PubMed

    Liu, Runzeng; Ruan, Ting; Wang, Thanh; Song, Shanjun; Guo, Feng; Jiang, Guibin

    2014-03-01

    A method using automated on-line solid phase extraction coupled with a high-performance liquid chromatography-tandem mass spectrometry system was developed for the determination of emerging benzotriazole UV stabilizers (BZTs) in different environmental water matrices including river water, sewage influent and effluent. Water sample was injected directly and the analytes were preconcentrated on a Polar Advantage II on-line SPE cartridge. After cleanup step the target BZTs were eluted in back flush mode and then separated on a liquid chromatography column. Experimental parameters such as sample loading flow rate, SPE cartridge, pH value and methanol ratio in the sample were optimized in detail. The method detection limits ranged from 0.21 to 2.17 ng/L. Recoveries of the target BZTs at 50 ng/L spiking level ranged from 76% to 114% and the inter-day RSDs ranged from 1% to 15%. The optimized method was successfully applied to analyze twelve water samples collected from different wastewater treatment plants and rivers, and five BZTs (UV-P, UV-329, UV-350, UV-234 and UV-328) were detected with concentrations up to 37.1 ng/L. The proposed method is simple, sensitive and suitable for simultaneous analysis and monitoring of BZTs in water samples. PMID:24468355

  6. Groundwater monitoring system

    DOEpatents

    Ames, Kenneth R.; Doesburg, James M.; Eschbach, Eugene A.; Kelley, Roy C.; Myers, David A.

    1987-01-01

    A groundwater monitoring system includes a bore, a well casing within and spaced from the bore, and a pump within the casing. A water impermeable seal between the bore and the well casing prevents surface contamination from entering the pump. Above the ground surface is a removable operating means which is connected to the pump piston by a flexible cord. A protective casing extends above ground and has a removable cover. After a groundwater sample has been taken, the cord is disconnected from the operating means. The operating means is removed for taking away, the cord is placed within the protective casing, and the cover closed and locked. The system is thus protected from contamination, as well as from damage by accident or vandalism.

  7. Automated lithocell

    NASA Astrophysics Data System (ADS)

    Englisch, Andreas; Deuter, Armin

    1990-06-01

    Integration and automation have gained more and more ground in modern IC-manufacturing. It is difficult to make a direct calculation of the profit these investments yield. On the other hand, the demands to man, machine and technology have increased enormously of late; it is not difficult to see that only by means of integration and automation can these demands be coped with. Here are some salient points: U the complexity and costs incurred by the equipment and processes have got significantly higher . owing to the reduction of all dimensions, the tolerances within which the various process steps have to be carried out have got smaller and smaller and the adherence to these tolerances more and more difficult U the cycle time has become more and more important both for the development and control of new processes and, to a great extent, for a rapid and reliable supply to the customer. In order that the products be competitive under these conditions, all sort of costs have to be reduced and the yield has to be maximized. Therefore, the computer-aided control of the equipment and the process combined with an automatic data collection and a real-time SPC (statistical process control) has become absolutely necessary for successful IC-manufacturing. Human errors must be eliminated from the execution of the various process steps by automation. The work time set free in this way makes it possible for the human creativity to be employed on a larger scale in stabilizing the processes. Besides, a computer-aided equipment control can ensure the optimal utilization of the equipment round the clock.

  8. Ground-water sampling methods and quality-control data for the Red River of the North basin, Minnesota, North Dakota, and South Dakota, 1993-95

    USGS Publications Warehouse

    Menheer, M.A.; Brigham, M.E.

    1997-01-01

    Quality-control data demonstrated that most constituents measured for this study yielded reproducible data, with low to undetectable contamination from the sampling and analytical procedures. Several constituents were occasionally or frequently detected in blank samples at levels similar to low-concentration ground-water-quality samples. For example, iron was detected in 75 percent of the blank samples, with a maximum concentration of 27 [ig/L, indicating that iron contamination may interfere with its determination at low levels in ground waters. Copper, aluminum, and dissolved organic carbon concentrations in blank samples overlap those determined in ground-waterquality samples, thereby precluding quantitative reporting of those constituents. Most pesticide data are reproducible, with minimal bias. Some pesticides had low but consistent recoveries; these data may be useful if spike and surrogate data are carefully considered. Data for some pesticides measured in this study should not be quantitatively reported or used, because they may underestimate the concentrations of those pesticides in ground waters.

  9. Automated macromolecular crystallization screening

    DOEpatents

    Segelke, Brent W.; Rupp, Bernhard; Krupka, Heike I.

    2005-03-01

    An automated macromolecular crystallization screening system wherein a multiplicity of reagent mixes are produced. A multiplicity of analysis plates is produced utilizing the reagent mixes combined with a sample. The analysis plates are incubated to promote growth of crystals. Images of the crystals are made. The images are analyzed with regard to suitability of the crystals for analysis by x-ray crystallography. A design of reagent mixes is produced based upon the expected suitability of the crystals for analysis by x-ray crystallography. A second multiplicity of mixes of the reagent components is produced utilizing the design and a second multiplicity of reagent mixes is used for a second round of automated macromolecular crystallization screening. In one embodiment the multiplicity of reagent mixes are produced by a random selection of reagent components.

  10. Groundwater ecohydrology: phreatophyte root uptake of groundwater

    NASA Astrophysics Data System (ADS)

    Steward, D. R.

    2008-12-01

    An analytic solution is presented for groundwater uptake by phreatophytes. This solution is developed for individual phreatophytes with prescribed mathematical forms of groundwater uptake beneath the plant. As this function is linear, mathematical solutions may be superimposed to simulate groundwater uptake by a field of phreatophytes. A simpler representation of groundwater uptake by a field of phreatophytes is developed through aid of the Analytic Element Method. This, too, may be superimposed as the functions are linear to simulate groundwater flow associated with fields of phreatophytes. Together, this provides a computationally effective means to simulate the detailed local groundwater flow field associated with uptake by a phreatophyte within a regional groundwater flow field. Results illustrate the spatial patterns that emerge from localized groundwater extractions within fields of phreatophytes.

  11. Impact of oil on groundwater chemical composition

    NASA Astrophysics Data System (ADS)

    Brakorenko, N. N.

    2015-11-01

    The objective of the paper is to characterize the chemical composition of groundwater samples from the monitoring wells drilled in the petrol station areas within the vicinity of Tomsk. The level of contamination has increased since many macro - and microcomponent concentrations (such as petroleum products, chlorine, sulphates, carbon dioxide and lead, etc.) in groundwater samples of the present study is higher than that in previous period samples.

  12. Hoe Creek groundwater restoration, 1989

    SciTech Connect

    Renk, R.R.; Crader, S.E.; Lindblom, S.R.; Covell, J.R.

    1990-01-01

    During the summer of 1989, approximately 6.5 million gallons of contaminated groundwater were pumped from 23 wells at the Hoe Creek underground coal gasification site, near Gillette, Wyoming. The organic contaminants were removed using activated carbon before the water was sprayed on 15.4 acres at the sites. Approximately 2647 g (5.8 lb) of phenols and 10,714 g (23.6 lb) of benzene were removed from the site aquifers. Phenols, benzene, toluene, ethylbenzene, and naphthalene concentrations were measured in 43 wells. Benzene is the only contaminant at the site exceeds the federal standard for drinking water (5 {mu}g/L). Benzene leaches into the groundwater and is slow to biologically degrade; therefore, the benzene concentration has remained high in the groundwater at the site. The pumping operation affected groundwater elevations across the entire 80-acre site. The water levels rebounded quickly when the pumping operation was stopped on October 1, 1989. Removing contaminated groundwater by pumping is not an effective way to clean up the site because the continuous release of benzene from coal tars is slow. Benzene will continue to leach of the tars for a long time unless its source is removed or the leaching rate retarded through mitigation techniques. The application of the treated groundwater to the surface stimulated plant growth. No adverse effects were noted or recorded from some 60 soil samples taken from twenty locations in the spray field area. 20 refs., 52 figs., 8 tabs.

  13. Groundwater pollution by perfluorinated surfactants in Tokyo.

    PubMed

    Murakami, Michio; Kuroda, Keisuke; Sato, Nobuyuki; Fukushi, Tetsuo; Takizawa, Satoshi; Takada, Hideshige

    2009-05-15

    Perfluorinated surfactants (PFSs) in groundwater were analyzed to reveal their distribution and sources. Sixteen groundwater and spring samples were collected from the Tokyo metropolitan area, and nine PFSs, including perfluorooctane-sulfonate (PFOS) and perfluorooctanoate (PFOA), were analyzed by liquid chromatography-tandem mass spectrometry. A column test using artificial street runoff was also performed to study their behavior. PFSs were detected in all groundwater samples, some at concentrations comparable to those in wastewater and street runoff, suggesting widespread contamination of groundwater by PFSs. In particular, PFOS -was more abundant in groundwater than in rivers, wastewater, and street runoff. This was attributed to its production from the degradation of its precursors, as supported by the column test. The occurrence of short-chain perfluorocarboxylates (PFCAs) in groundwater was also consistent with the results of the column test, showing that limited amounts of short-chain PFCAs were removed by soil, as the efficiency of removal increased with the chain length. We evaluated the contributions of PFCAs from wastewater and surface runoff to groundwater by using two indicators, the long/(short + long) ratio and the even(even + odd) ratio. Both ratios showed good agreement in their calculated contributions in heavily contaminated groundwater where breakthroughs likely occurred. Wastewater and surface runoff contributed to 54-86% and 16-46% of PFCAs, respectively, in groundwater. PMID:19544843

  14. Automated Desalting Apparatus

    NASA Technical Reports Server (NTRS)

    Spencer, Maegan K.; Liu, De-Ling; Kanik, Isik; Beegle, Luther

    2010-01-01

    Because salt and metals can mask the signature of a variety of organic molecules (like amino acids) in any given sample, an automated system to purify complex field samples has been created for the analytical techniques of electrospray ionization/ mass spectroscopy (ESI/MS), capillary electrophoresis (CE), and biological assays where unique identification requires at least some processing of complex samples. This development allows for automated sample preparation in the laboratory and analysis of complex samples in the field with multiple types of analytical instruments. Rather than using tedious, exacting protocols for desalting samples by hand, this innovation, called the Automated Sample Processing System (ASPS), takes analytes that have been extracted through high-temperature solvent extraction and introduces them into the desalting column. After 20 minutes, the eluent is produced. This clear liquid can then be directly analyzed by the techniques listed above. The current apparatus including the computer and power supplies is sturdy, has an approximate mass of 10 kg, and a volume of about 20 20 20 cm, and is undergoing further miniaturization. This system currently targets amino acids. For these molecules, a slurry of 1 g cation exchange resin in deionized water is packed into a column of the apparatus. Initial generation of the resin is done by flowing sequentially 2.3 bed volumes of 2N NaOH and 2N HCl (1 mL each) to rinse the resin, followed by .5 mL of deionized water. This makes the pH of the resin near neutral, and eliminates cross sample contamination. Afterward, 2.3 mL of extracted sample is then loaded into the column onto the top of the resin bed. Because the column is packed tightly, the sample can be applied without disturbing the resin bed. This is a vital step needed to ensure that the analytes adhere to the resin. After the sample is drained, oxalic acid (1 mL, pH 1.6-1.8, adjusted with NH4OH) is pumped into the column. Oxalic acid works as a

  15. Optimized Heart Sampling and Systematic Evaluation of Cardiac Therapies in Mouse Models of Ischemic Injury: Assessment of Cardiac Remodeling and Semi-Automated Quantification of Myocardial Infarct Size.

    PubMed

    Valente, Mariana; Araújo, Ana; Esteves, Tiago; Laundos, Tiago L; Freire, Ana G; Quelhas, Pedro; Pinto-do-Ó, Perpétua; Nascimento, Diana S

    2015-01-01

    Cardiac therapies are commonly tested preclinically in small-animal models of myocardial infarction. Following functional evaluation, post-mortem histological analysis is essential to assess morphological and molecular alterations underlying the effectiveness of treatment. However, non-methodical and inadequate sampling of the left ventricle often leads to misinterpretations and variability, making direct study comparisons unreliable. Protocols are provided for representative sampling of the ischemic mouse heart followed by morphometric analysis of the left ventricle. Extending the use of this sampling to other types of in situ analysis is also illustrated through the assessment of neovascularization and cellular engraftment in a cell-based therapy setting. This is of interest to the general cardiovascular research community as it details methods for standardization and simplification of histo-morphometric evaluation of emergent heart therapies. © 2015 by John Wiley & Sons, Inc. PMID:26629776

  16. Laboratory electrical resistivity analysis of geologic samples from Fort Irwin, California: Chapter E in Geology and geophysics applied to groundwater hydrology at Fort Irwin, California

    USGS Publications Warehouse

    Bloss, Benjamin R.; Bedrosian, Paul A.

    2015-01-01

    Correlating laboratory resistivity measurements with geophysical resistivity models helps constrain these models to the geology and lithology of an area. Throughout the Fort Irwin National Training Center area, 111 samples from both cored boreholes and surface outcrops were collected and processed for laboratory measurements. These samples represent various lithologic types that include plutonic and metamorphic (basement) rocks, lava flows, consolidated sedimentary rocks, and unconsolidated sedimentary deposits that formed in a series of intermountain basins. Basement rocks, lava flows, and some lithified tuffs are generally resistive (≥100 ohm-meters [Ω·m]) when saturated. Saturated unconsolidated samples are moderately conductive to conductive, with resistivities generally less than 100 Ω·m, and many of these samples are less than 50 Ω·m. The unconsolidated samples can further be separated into two broad groups: (1) younger sediments that are moderately conductive, owing to their limited clay content, and (2) older, more conductive sediments with a higher clay content that reflects substantial amounts of originally glassy volcanic ash subsequently altered to clay. The older sediments are believed to be Tertiary. Time-domain electromagnetic (TEM) data were acquired near most of the boreholes, and, on the whole, close agreements between laboratory measurements and resistivity models were found. 

  17. Enumeration of total aerobic bacteria and Escherichia coli in minced meat and on carcass surface samples with an automated most-probable-number method compared with colony count protocols.

    PubMed

    Paulsen, P; Schopf, E; Smulders, F J M

    2006-10-01

    An automated most-probable-number (MPN) system for the enumeration of total bacterial flora and Escherichia coli was compared with plate count agar and tryptone-bile-glucuronide (TBX) and ColiID (in-house method) agar methodology. The MPN partitioning of sample aliquots was done automatically on a disposable card containing 48 wells of 3 different volumes, i.e., 16 replicates per volume. Bacterial growth was detected by the formation of fluorescent 4-methylumbilliferone. After incubation, the number of fluorescent wells was read with a separate device, and the MPN was calculated automatically. A total of 180 naturally contaminated samples were tested (pig and cattle carcass surfaces, n = 63; frozen minced meat, n = 62; and refrigerated minced meat, n = 55). Plate count agar results and MPN were highly correlated (r = 0.99), with log MPN = -0.25 + 1.05 x log CFU (plate count agar) (n = 163; range, 2.2 to 7.5 log CFU/g or cm2). Only a few discrepancies were recorded. In two samples (1.1%), the differences were > or = 1.0 log; in three samples (1.7%), the differences were > or = 0.5 log. For E. coli, regression analysis was done for all three methods for 80 minced meat samples, which were above the limit of detection (1.0 log CFU/g): log MPN = 0.18 + 0.98 x log CFU (TBX), r = 0.96, and log MPN = -0.02 + 0.99 x log CFU (ColiID), r = 0.99 (range, 1.0 to 4.2 log CFU/g). Four discrepant results were recorded, with differences of > 0.5 but < 1.0 log unit. These results suggest that the automated MPN method described is a suitable and labor-saving alternative to colony count techniques for total bacterial flora and E. coli determination in minced meat or on carcass surfaces. PMID:17066934

  18. Pesticide Multiresidue Analysis in Cereal Grains Using Modified QuEChERS Method Combined with Automated Direct Sample Introduction GC-TOFMS and UPLC-MS/MS Techniques

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The QuEChERS (quick, easy, cheap, effective, rugged, and safe) sample preparation method was modified to accommodate various cereal grain matrices (corn, oat, rice and wheat) and provide good analytical results (recoveries in the range of 70-120% and RSDs <20%) for the majority of the target pestici...

  19. Determination of benzoylureas in ground water samples by fully automated on-line pre-concentration and liquid chromatography-fluorescence detection.

    PubMed

    Gil García, M D; Martínez Galera, M; Barranco Martínez, D; Gisbert Gallego, J

    2006-01-27

    An on-line pre-concentration method for the analysis of five benzoylureas (diflubenzuron, triflumuron, hexaflumuron, lufenuron and flufenoxuron) in ground water samples was evaluated using two C(18) columns, and fluorescence detection after photochemical induced fluorescence (PIF) post-column derivatization. The trace enrichment was carried out with 35 mL of ground water modified with 15 mL of MeOH on a 50 mm x 4.6 mm I.D. first enrichment column (C-1) packed with 5 microm Hypersil Elite C(18). Retention properties of pesticides and humic acids usually contained in ground water were studied on C-1 at concentration levels ranging between 0.04 and 14.00 microg/L in water samples. The results obtained in this study show that the pesticides are pre-concentrated in the first short column while the humic acids contained in the ground water samples are eluted to waste. Pesticides recoveries ranged between 92.3 and 109.5%. The methodology proposed was used to determine benzoylureas in ground water samples at levels lower than 0.1 microg/L (maximum levels established by the European Union). PMID:16337641

  20. ACCELERATED SOLVENT EXTRACTION COMBINED WITH AUTOMATED SOLID PHASE EXTRACTION-GC/MS FOR ANALYSIS OF SEMIVOLATILE COMPOUNDS IN HIGH MOISTURE CONTENT SOLID SAMPLES

    EPA Science Inventory

    A research project was initiated to address a recurring problem of elevated detection limits above required risk-based concentrations for the determination of semivolatile organic compounds in high moisture content solid samples. This project was initiated, in cooperation with t...

  1. Groundwater Under Vertisols

    NASA Astrophysics Data System (ADS)

    Kurtzman, D.; Baram, S.; Dahan, O.

    2015-12-01

    Vertisols are cracking clayey soils that: i) usually form in alluvial lowlands where normally, groundwater pools into aquifers; ii) have different types of voids (due to cracking) which make flow and transport of water and gas complex, and iii) are regarded as fertile soils in many areas. The combination of these characteristics results in the unique soil-aquifer phenomena that are highlighted and summarized in this review work. The following four vertisols-aquifer topics will be discussed: 1) Soil cracks as preferential pathways for water and contaminants - Lysimeter to basin-scale observations show the significance of cracks as preferential flow paths in vertisols that bypass matrix blocks in the unsaturated zone. Fresh recharge and groundwater contamination from these fluxes will be reviewed; 2) Soil cracks as deep evaporators and unsaturated-zone salinity - Deep soil samples under uncultivated vertisols in semiarid regions reveal a dry (immobile), saline matrix, partly due to enhanced evaporation through soil cracks. Observations of this phenomenon will be compared and the mechanism of evapoconcentration due to air flow in the cracks is discussed; 3) Impact of cultivation on flushing of the unsaturated zone and aquifer salinization - Land-use change of vertisols from native land to cropland promotes greater fluxes through the saline unsaturated-zone matrix, eventually flushing salts to the aquifer. Different degrees of salt flushing will be presented as well as aquifer salinization on different scales, and a comparison is made with aquifers under other soils; 4) Relatively little nitrate contamination in aquifers under vertisols - A number of observations show that aquifers under cultivated vertisols are somewhat resistant to groundwater contamination by nitrate (the major agriculturally related groundwater problem). Denitrification is probably the main mechanism supporting this resistance, whereas a certain degree of anion-exchange capacity may have a

  2. Groundwater Monitoring Report Generation Tools - 12005

    SciTech Connect

    Lopez, Natalie

    2012-07-01

    Compliance with National and State environmental regulations (e.g. Resource Conservation and Recovery Act (RCRA) and Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) aka SuperFund) requires Savannah River Site (SRS) to extensively collect and report groundwater monitoring data, with potential fines for missed reporting deadlines. Several utilities have been developed at SRS to facilitate production of the regulatory reports which include maps, data tables, charts and statistics. Components of each report are generated in accordance with complex sets of regulatory requirements specific to each site monitored. SRS developed a relational database to incorporate the detailed reporting rules with the groundwater data, and created a set of automation tools to interface with the information and generate the report components. These process improvements enhanced quality and consistency by centralizing the information, and have reduced manpower and production time through automated efficiencies. (author)

  3. GROUNDWATER MONITORING REPORT GENERATION TOOLS - 12005

    SciTech Connect

    Lopez, N.

    2011-11-21

    Compliance with National and State environmental regulations (e.g. Resource Conservation and Recovery Act (RCRA) and Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) aka SuperFund) requires Savannah River Site (SRS) to extensively collect and report groundwater monitoring data, with potential fines for missed reporting deadlines. Several utilities have been developed at SRS to facilitate production of the regulatory reports which include maps, data tables, charts and statistics. Components of each report are generated in accordance with complex sets of regulatory requirements specific to each site monitored. SRS developed a relational database to incorporate the detailed reporting rules with the groundwater data, and created a set of automation tools to interface with the information and generate the report components. These process improvements enhanced quality and consistency by centralizing the information, and have reduced manpower and production time through automated efficiencies.

  4. Automated In-Injector Derivatization Combined with High-Performance Liquid Chromatography-Fluorescence Detection for the Determination of Semicarbazide in Fish and Bread Samples.

    PubMed

    Wang, Yinan; Chan, Wan

    2016-04-01

    Semicarbazide (1) is a widespread genotoxic food contaminant originating as a metabolic byproduct of the antibiotic nitrofurazone used in fish farming or as a thermal degradation product of the common flour additive azodicarbonamide. The goal of this study is to develop a simple and sensitive high-performance liquid chromatography coupled with fluorescence detection (HPLC-FLD) method for the detection of compound 1 in food products. In comparison to existing methods for the determination of compound 1, the reported method combining online precolumn derivatization and HPLC-FLD is less labor-intensive, produces higher sample throughput, and does not require the use of expensive analytical instruments. After validation of accuracy and precision, this method was applied to determine the amount of compound 1 in fish and bread samples. Comparative studies using an established liquid chromatography coupled with tandem mass spectrometry method did not yield systematically different results, indicating that the developed HPLC-FLD method is accurate and suitable for the determination of compound 1 in fish and bread samples. PMID:26985968

  5. Diel Sampling of Groundwater and Surface Water for Trace Elements and Select Water-Quality Constituents at a Former Zinc Smelter Site near Hegeler, Illinois, August 1-3, 2007

    USGS Publications Warehouse

    Kay, Robert T.; Groschen, George E.; Dupre, David H.; Drexler, Timothy D.; Thingvold, Karen L.; Rosenfeld, Heather J.

    2009-01-01

    Surface water can exhibit substantial diel variations in the concentration of a number of constituents. Sampling regimens that do not characterize diel variations in water quality can result in an inaccurate understanding of site conditions and of the threat posed by the site to human health and the environment. Surface- and groundwater affected by acid drainage were sampled every 60 to 90 minutes over a 48-hour period at a former zinc smelter known as the Hegeler Zinc Superfund Site, in Hegeler, Ill. Groundwater-quality data from a well at the site indicate stable, low pH, weakly oxidizing geochemical conditions in the aquifer. With the exceptions of temperature and pH, no constituents exhibited diel variations in groundwater. Variations in temperature and pH likely were not representative of conditions in the aquifer. Surface water was sampled at a site on Grape Creek. Diel variations were observed in temperature, dissolved oxygen, pH, and specific conductance, and in the concentrations of nitrite, barium, iron, lead, vanadium, and possibly uranium. Concentrations during the diel cycles varied by about an order of magnitude for nitrite and varied by about a factor of two for barium, iron, lead, vanadium, and uranium. Temperature, dissolved oxygen, specific conductance, nitrite, barium, lead, and uranium generally reached maximum values during the afternoon and minimum values during the night. Iron, vanadium, and pH generally reached minimum values during the afternoon and maximum values during the night. These variations would need to be accounted for during sampling of surface-water quality in similar hydrologic settings. The temperature variations in surface water were affected by variations in air temperature. Concentrations of dissolved oxygen were affected by variations in the intensity of photosynthetic activity and respiration. Nitrite likely was formed by the oxidation of ammonium by dissolved oxygen and degraded by its anaerobic oxidation by ammonium or

  6. Automation in biological crystallization

    PubMed Central

    Shaw Stewart, Patrick; Mueller-Dieckmann, Jochen

    2014-01-01

    Crystallization remains the bottleneck in the crystallographic process leading from a gene to a three-dimensional model of the encoded protein or RNA. Automation of the individual steps of a crystallization experiment, from the preparation of crystallization cocktails for initial or optimization screens to the imaging of the experiments, has been the response to address this issue. Today, large high-throughput crystallization facilities, many of them open to the general user community, are capable of setting up thousands of crystallization trials per day. It is thus possible to test multiple constructs of each target for their ability to form crystals on a production-line basis. This has improved success rates and made crystallization much more convenient. High-throughput crystallization, however, cannot relieve users of the task of producing samples of high quality. Moreover, the time gained from eliminating manual preparations must now be invested in the careful evaluation of the increased number of experiments. The latter requires a sophisticated data and laboratory information-management system. A review of the current state of automation at the individual steps of crystallization with specific attention to the automation of optimization is given. PMID:24915074

  7. Determination of polycyclic aromatic hydrocarbons in food samples by automated on-line in-tube solid-phase microextraction coupled with high-performance liquid chromatography-fluorescence detection.

    PubMed

    Ishizaki, A; Saito, K; Hanioka, N; Narimatsu, S; Kataoka, H

    2010-08-27

    A simple and sensitive automated method, consisting of in-tube solid-phase microextraction (SPME) coupled with high-performance liquid chromatography-fluorescence detection (HPLC-FLD), was developed for the determination of 15 polycyclic aromatic hydrocarbons (PAHs) in food samples. PAHs were separated within 15 min by HPLC using a Zorbax Eclipse PAH column with a water/acetonitrile gradient elution program as the mobile phase. The optimum in-tube SPME conditions were 20 draw/eject cycles of 40 microL of sample using a CP-Sil 19CB capillary column as an extraction device. Low- and high-molecular weight PAHs were extracted effectively onto the capillary coating from 5% and 30% methanol solutions, respectively. The extracted PAHs were readily desorbed from the capillary by passage of the mobile phase, and no carryover was observed. Using the in-tube SPME HPLC-FLD method, good linearity of the calibration curve (r>0.9972) was obtained in the concentration range of 0.05-2.0 ng/mL, and the detection limits (S/N=3) of PAHs were 0.32-4.63 pg/mL. The in-tube SPME method showed 18-47 fold higher sensitivity than the direct injection method. The intra-day and inter-day precision (relative standard deviations) for a 1 ng/mL PAH mixture were below 5.1% and 7.6% (n=5), respectively. This method was applied successfully to the analysis of tea products and dried food samples without interference peaks, and the recoveries of PAHs spiked into the tea samples were >70%. Low-molecular weight PAHs such as naphthalene and pyrene were detected in many foods, and carcinogenic benzo[a]pyrene, at relatively high concentrations, was also detected in some black tea samples. This method was also utilized to assess the release of PAHs from tea leaves into the liquor. PMID:20637468

  8. CFC concentrations in fresh groundwater in Latvia

    NASA Astrophysics Data System (ADS)

    Bikše, J.; DÄ`liĆa, A.; Babre, A.; RetiÄ·e, I.; Raga, B.; PÄ`rkone, E.

    2012-04-01

    One of the main issues in groundwater studies is groundwater age, also known as residence time. This is important for investigating the groundwater filtration rate and to solve variety issues of groundwater use, management and protection. Groundwater age studies in Latvia have been rare, and the latest study, which defined the new results of age of groundwater using CFC dating method, was during years 2002 - 2006 and it was carried out by Denmark and Greenland Geological Survey (GEUS) and the Latvian State Geological Survey as a joint study on the impact of agriculture on groundwater quality in Latvia. Within the project "Interdisciplinary research groups and model system for groundwater studies" (PUMA) the studies of groundwater age by CFCs and 3H methods is continued. The concentration of tritium will be determined in about 60 samples, but the CFC concentration is now analyzed in 39 samples because previous studies have shown that Latvian CFC method is appropriate for aquifers to an average depth of 30-50 m. CFCs concentrations were analyzed in the laboratory at GEUS after Busenberg and Plummer described method by gas chromatography equipped with an EDC detector. Interpretation of the results was carried out by laboratory expert Troels Laier. Samples are taken on both from the unconfined aquifer and the first confined aquifer, the sampling interval varies from 5-10 m up to 120-130 m for tritium analysis and up to 80 m depth for most CFC analysis except one sample that comes from 128 m depth. It is stated that most of determined groundwater from both - confined and unconfined aquifer - has residence time of 35-55 years. So far, the results suggest that groundwater movement is fairly rapid in places where fractured dolomite forms the aquifer as the water residence time at 60-70 m depth is only 35-55 years. On the other hand, the composition of overlying Quaternary deposits (clay, glacial till loam or sand, sand - gravel sediments) has great importance on variations

  9. Automated dynamic hollow fiber liquid-liquid-liquid microextraction combined with capillary electrophoresis for speciation of mercury in biological and environmental samples.

    PubMed

    Li, Pingjing; He, Man; Chen, Beibei; Hu, Bin

    2015-10-01

    A simple home-made automatic dynamic hollow fiber based liquid-liquid-liquid microextraction (AD-HF-LLLME) device was designed and constructed for the simultaneous extraction of organomercury and inorganic mercury species with the assistant of a programmable flow injection analyzer. With 18-crown-6 as the complexing reagent, mercury species including methyl-, ethyl-, phenyl- and inorganic mercury were extracted into the organic phase (chlorobenzene), and then back-extracted into the acceptor phase of 0.1% (m/v) 3-mercapto-1-propanesulfonic acid (MPS) aqueous solution. Compared with automatic static (AS)-HF-LLLME system, the extraction equilibrium of target mercury species was obtained in shorter time with higher extraction efficiency in AD-HF-LLLME system. Based on it, a new method of AD-HF-LLLME coupled with large volume sample stacking (LVSS)-capillary electrophoresis (CE)/UV detection was developed for the simultaneous analysis of methyl-, phenyl- and inorganic mercury species in biological samples and environmental water. Under the optimized conditions, AD-HF-LLLME provided high enrichment factors (EFs) of 149-253-fold within relatively short extraction equilibrium time (25min) and good precision with RSD between 3.8 and 8.1%. By combining AD-HF-LLLME with LVSS-CE/UV, EFs were magnified up to 2195-fold and the limits of detection (at S/N=3) for target mercury species were improved to be sub ppb level. PMID:26363947

  10. Automated hollow-fiber liquid-phase microextraction followed by liquid chromatography with mass spectrometry for the determination of benzodiazepine drugs in biological samples.

    PubMed

    Nazaripour, Ali; Yamini, Yadollah; Ebrahimpour, Behnam; Fasihi, Javad

    2016-07-01

    In this study, two-phase hollow-fiber liquid-phase microextraction and three-phase hollow-fiber liquid-phase microextraction based on two immiscible organic solvents were compared for extraction of oxazepam and Lorazepam. Separations were performed on a liquid chromatography with mass spectrometry instrument. Under optimal conditions, three-phase hollow-fiber liquid-phase microextraction based on two immiscible organic solvents has a better extraction efficiency. In a urine sample, for three-phase hollow fiber liquid-phase microextraction based on two immiscible organic solvents, the calibration curves were found to be linear in the range of 0.6-200 and 0.9-200 μg L(-1) and the limits of detection were 0.2 and 0.3 μg L(-1) for oxazepam and lorazepam, respectively. For two-phase hollow fiber liquid-phase microextraction, the calibration curves were found to be linear in the range of 1-200 and 1.5-200 μg L(-1) and the limits of detection were 0.3 and 0.5 μg L(-1) for oxazepam and lorazepam, respectively. In a urine sample, for three-phase hollow-fiber-based liquid-phase microextraction based on two immiscible organic solvents, relative standard deviations in the range of 4.2-4.5% and preconcentration factors in the range of 70-180 were obtained for oxazepam and lorazepam, respectively. Also for the two-phase hollow-fiber liquid-phase microextraction, preconcentration factors in the range of 101-257 were obtained for oxazepam and lorazepam, respectively. PMID:27144369

  11. An Automated, Low Mass, Low Power Drill for Acquiring Subsurface Samples of Ground Ice for Astrobiology Studies on Earth and on Mars

    NASA Technical Reports Server (NTRS)

    Briggs, G. A.; McKay, C.; George, J.; Derkowski, G.; Cooper, G.; Zacny, K.; Baker, R. Fincher; Pollard, W.; Clifford, S.

    2003-01-01

    As a project that is part of NASA s Astrobiology Technology & Instrument Development Program (ASTID), we are developing a low mass (approx.20kg) drill that will be operated without drilling fluids and at very low power levels (approx.60 watts electrical) to access and retrieve samples from permafrost regions of Earth and Mars. The drill, designed and built as a joint effort by NASA JSC and Baker-Hughes International, takes the form of a down-hole unit attached to a cable so that it can, in principle, be scaled easily to reach significant depths. A parallel laboratory effort is being carried out at UC Berkeley to characterize the physics of dry drilling under martian conditions of pressure, temperature and atmospheric composition. Data from the UCB and JSC laboratory experiments are being used as input to a drill simulation program which is under development to provide autonomous control of the drill. The first Arctic field test of the unit is planned for May 2004. A field expedition to Eureka on Ellesmere Island in Spring 2003 provided an introduction for several team members to the practical aspects of drilling under Arctic conditions. The field effort was organized by Wayne Pollard of McGill University and Christopher McKay of NASA ARC. A conventional science drill provided by New Zealand colleagues was used to recover ground ice cores for analysis of their microbial content and also to develop techniques using tracers to track the depth of penetration of contamination from the core surface into the interior of the samples.

  12. Fast automated dual-syringe based dispersive liquid-liquid microextraction coupled with gas chromatography-mass spectrometry for the determination of polycyclic aromatic hydrocarbons in environmental water samples.

    PubMed

    Guo, Liang; Tan, Shufang; Li, Xiao; Lee, Hian Kee

    2016-03-18

    An automated procedure, combining low density solvent based solvent demulsification dispersive liquid-liquid microextraction (DLLME) with gas chromatography-mass spectrometry analysis, was developed for the determination of polycyclic aromatic hydrocarbons (PAHs) in environmental water samples. Capitalizing on a two-rail commercial autosampler, fast solvent transfer using a large volume syringe dedicated to the DLLME process, and convenient extract collection using a small volume microsyringe for better GC performance were enabled. Extraction parameters including the type and volume of extraction solvent, the type and volume of dispersive solvent and demulsification solvent, extraction and demulsification time, and the speed of solvent injection were investigated and optimized. Under the optimized conditions, the linearity ranged from 0.1 to 50 μg/L, 0.2 to 50 μg/L, and 0.5 to 50 μg/L, depending on the analytes. Limits of detection were determined to be between 0.023 and 0.058 μg/L. The method was applied to determine PAHs in environmental water samples. PMID:26893021

  13. Mixed Waste Management Facility Groundwater Monitoring Report

    SciTech Connect

    Chase, J.

    1998-03-01

    During fourth quarter 1997, eleven constituents exceeded final Primary Drinking Water Standards (PDWS) in groundwater samples from downgradient monitoring wells at the Mixed Waste Management Facility. No constituents exceeded final PDWS in samples from upgradient monitoring wells. As in previous quarters, tritium and trichloroethylene were the most widespread elevated constituents. The groundwater flow directions and rates in the three hydrostratigraphic units were similar to those of previous quarters.

  14. Both Automation and Paper.

    ERIC Educational Resources Information Center

    Purcell, Royal

    1988-01-01

    Discusses the concept of a paperless society and the current situation in library automation. Various applications of automation and telecommunications are addressed, and future library automation is considered. Automation at the Monroe County Public Library in Bloomington, Indiana, is described as an example. (MES)

  15. Sanitary landfill groundwater monitoring report

    SciTech Connect

    Not Available

    1993-02-01

    The Sanitary Landfill at the Savannah River Site (SRS) is composed of the original 32-acre landfill, plus expansion areas to the north and south that added 16 and 22 acres, respectively, to the facility. The landfill is subject to the requirements of the Resource Conservation and Recovery Act and currently operates under South Carolina Department of Health and Environmental Control (SCDHEC) Domestic Waste Permit 87A. Fifty-seven wells of the LFW series monitor the groundwater quality in Steed Pond Aquifer (formerly Aquifer Zone I/IIC[sub 2]) (Water Table) beneath the Sanitary Landfill. These wells are sampled quarterly for certain indicator parameters, inorganics, metals, radionuclides, volatile organics, and other constituents as part of the SRS Groundwater Monitoring Program and to comply with the SCDHEC domestic waste permit. This report reviews the 1992 activities of the SRS Groundwater Monitoring Program.

  16. Spatial assessment of groundwater quality based on minor ions

    NASA Astrophysics Data System (ADS)

    Karthikeyan, B.; Elango, L.

    2011-12-01

    Use of water for domestic, agricultural and industrial purpose depends on the desirable range of concentration of various ions. As the suitability of groundwater for different use depends on concentration of several ions, delineation of a region having groundwater of suitable quality relies on integrating the quality of groundwater with respect to each ion. This can be brought out with the aid of advanced tools such as GIS (geographical information system). This study was carried out with the objective of assessing the groundwater quality based on EC (electrical conductivity), fluoride, bromide and nitrate using GIS techniques and the regions requiring attention for groundwater treatment was identified in a part of Nalgonda district, Andhra Pradesh, southern India. Forty five groundwater samples were collected and their EC, fluoride, nitrate and bromide concentration was analysed. Groundwater was not suitable for consumption in 6.6% of the samples based on EC. Fluoride, nitrate and bromide concentration in groundwater was not permissible as per BIS and WHO standards in 57%, 22% and 11% of the groundwater samples respectively. The areas having groundwater suitable or unsuitable for domestic use was delineated using GIS. The groundwater samples collected from 69% of the locations exceeded the desirable limit for drinking for atleast one parameter. The groundwater was unsuitable for domestic use in the northeastern and southeastern parts of this area. The source for the concentration of these parameters exceeding the limit is different for each parameter. Hence it is important to take a suitable collective measure in improving the groundwater quality. Considering the various options available for redeeming the groundwater quality, artificial recharge of groundwater by rainwater harvesting will be suitable to reduce the concentration of all ions in this area.

  17. Development of an automated sampling-analysis system for simultaneous measurement of reactive oxygen species (ROS) in gas and particle phases: GAC-ROS

    NASA Astrophysics Data System (ADS)

    Huang, Wei; Zhang, Yuanxun; Zhang, Yang; Zeng, Limin; Dong, Huabin; Huo, Peng; Fang, Dongqing; Schauer, James J.

    2016-06-01

    A novel online system, GAC-ROS, for simultaneous measurement of reactive oxygen species (ROS) in both gas and particle phases was developed based on 2‧,7‧-dichlorofluorescin (DCFH) assay to provide fast sampling and analysis of atmospheric ROS. The GAC-ROS, composed of a Gas and Aerosol Collector (GAC), a series of reaction and transportation systems, and a fluorescence detector, was tested for instrumental performance in laboratory. Results showed good performance with a favorable R2 value for the calibration curve (above 0.998), high penetration efficiencies of ROS (above 99.5%), and low detection limits (gas-phase ROS: 0.16 nmol H2O2 m-3; particle-phase ROS: 0.12 nmol H2O2 m-3). Laboratorial comparison between online and offline methods for particle-bound ROS showed significant loss of ROS due to the relatively long time off-line treatment. Field observations in Beijing found that concentrations of ROS in winter time were significantly higher than those observed in spring. Only a few weak positive correlations were found between ROS and some air pollutants, which reflects the complexities of ROS generation and transformation in atmosphere. This study was the first to simultaneously obtain concentrations of gas and particle-phase ROS using an online method. Consequently, it provides a powerful tool to characterize the oxidizing capacity of the atmosphere and the sources of the oxidizing capacity.

  18. Automated ac galvanomagnetic measurement system

    NASA Technical Reports Server (NTRS)

    Szofran, F. R.; Espy, P. N.

    1985-01-01

    An automated, ac galvanomagnetic measurement system is described. Hall or van der Pauw measurements in the temperature range 10-300 K can be made at a preselected magnetic field without operator attendance. Procedures to validate sample installation and correct operation of other system functions, such as magnetic field and thermometry, are included. Advantages of ac measurements are discussed.

  19. AFBC Roadbed Project groundwater data

    SciTech Connect

    Carpenter, W.

    1992-08-21

    TVA permitted the use of AFBC material in a section of roadbed at Paducah, Kentucky, for the purpose of demonstrating its usability as a roadbed base. To determine if the material would leach and contaminate groundwater, four wells and seven lysimeters were installed beside and in the roadbed base material. In August 1991, TVA Field Engineering visited the AFBC Roadbed Project to collect samples and water quality data. The goal was to collect samples and data from four wells and seven lysimeters. All attempts to collect samples from the lysimeters failed with one exemption. All attempts to collect samples from the groundwater wells were successful. The analytical data from the four wells and one lysimeter are also attached. The well data is typical of groundwater in the Paducah, Kentucky area indicating that it was not affected by the AFBC roadbed material. The analysis of the lysimeter shows concentrations for iron and manganese above normal background levels, however, the data do not reflect significant concentrations of these heavy metals. Also, the difficulty in obtaining the lysimeter samples and the fact that the samples had to be composited to obtain sufficient quantity to analyze would make a qualitative evaluation of the data questionable.

  20. The Automated Planetary Space Station

    NASA Technical Reports Server (NTRS)

    Ivie, C. V.; Friedman, L. D.

    1977-01-01

    Results are presented for a study on mission definition and design to determine broad technology directions and needs for advanced planetary spacecraft and future planetary missions. The discussion covers mission selection, system design, and technology assessment and review for a multicomponent spacecraft exploration facility provided with nuclear power propulsion. As an example, the Automated Planetary Space Station at Jupiter is examined as a generic concept which has the capability of conducting in-depth investigations of different aspects of the entire Jovian system. Mission planning is discussed relative to low-thrust trajectory control, automatic target identification and landing, roving vehicle operation, and automated sample analysis.

  1. A Computerized Data-Base System for Land-Use and Land-Cover Data Collected at Ground-Water Sampling Sites in the Pilot National Water Quality Assessment Program

    USGS Publications Warehouse

    Scott, Jonathon C.

    1989-01-01

    Data-base software has been developed for the management of land-use and land-cover data collected by the U.S. Geological Survey as part of a pilot program to test and refine concepts for a National Water-Quality Assessment Program. This report describes the purpose, use, and design of the land-use and land-cover data-base software. The software provides capabilities for interactive storage and retrieval of land-use and land-cover data collected at ground-water sampling sites. Users of the software can add, update, and delete land-use and land-cover data. The software also provides capabilities to group, print, and summarize the data. The land-use and land-cover data-base software supports multiple data-base systems so that data can be accessed by persons in different offices. Data-base systems are organized in a tiered structure. Each data-base system contains all the data stored in the data-base systems located in the lower tiers of the structure. Data can be readily transmitted from lower tiers to high tiers of the structure. Therefore, the data-base system at the highest tier of the structure contains land-use and land-cover data for the entire pilot program.

  2. Automated quantum Hall resistance standard

    SciTech Connect

    Schumacher, B.

    1994-12-31

    For precision quantized Hall resistance measurements quantum Hall effect samples have to be checked according to the CCE-guidelines. To perform these checks an automated measuring system is described, which is able to examine and characterize various samples. With these measurements a calibration of a precision 10 k{Omega} resistance standard is obtained with an uncertainty of better than 5 x 10{sup -8} (1 {sigma}) using a long-scale digital multimeter.

  3. Automated detection and interpretation of spectral information using cross-correlation, millilitre volumes, pneumatic nebulization sample introduction and inductively coupled plasma-atomic emission spectrometry with photodiode array detection

    NASA Astrophysics Data System (ADS)

    Karanassios, V.; Drouin, P. J.; Spiers, G. A.

    1998-08-01

    A method for automated detection and interpretation of spectral information from ˜230 nm spectral windows, millilitre volume samples for 15 elements is presented. The basic approach involves cross-correlation of a spectral pattern obtained by running laboratory prepared multi-element `unknowns' with a reference spectral pattern obtained by running a single element standard. From the resultant cross-correlogram, it can be decided whether or not the sought-for reference spectral pattern (and the corresponding element) are present in the unknown. Spectral patterns were acquired using an inductively coupled plasma-atomic emission spectrometry (ICP-AES) system equipped with a linear, 1024-element, photo-diode array (Leco, Plasmarray). Reference spectral patterns for Al, Au, Be, Cd, Cu, Ga, Mg, Mn, Ni, Pd, Si, Sc, Y, Sr and Zn were converted to noise-free and interference-free binary software masks and, subsequently, to analogue software masks. Cross-correlation of the analogue masks with spectral patterns acquired by running multi-element unknowns is discussed, an algorithm that does not rely on fast Fourier transforms (FFT) to calculate cross-correlations is presented and a context-sensitive, colour-coded and interrogatable periodic table graphical user-interface that presents the likely composition of an unknown on the computer screen is described in detail.

  4. Automated imatinib immunoassay

    PubMed Central

    Beumer, Jan H.; Kozo, Daniel; Harney, Rebecca L.; Baldasano, Caitlin N.; Jarrah, Justin; Christner, Susan M.; Parise, Robert; Baburina, Irina; Courtney, Jodi B.; Salamone, Salvatore J.

    2014-01-01

    Background Imatinib pharmacokinetic variability and the relationship of trough concentrations with clinical outcomes have been extensively reported. Though physical methods to quantitate imatinib exist, they are not widely available for routine use. An automated homogenous immunoassay for imatinib has been developed, facilitating routine imatinib testing. Methods Imatinib-selective monoclonal antibodies, without substantial cross-reactivity to the N-desmethyl metabolite or N-desmethyl conjugates, were produced. The antibodies were conjugated to 200 nm particles to develop immunoassay reagents on the Beckman Coulter AU480™ analyzer. These reagents were analytically validated using Clinical Laboratory Standards Institute protocols. Method comparison to LC-MS/MS was conducted using 77 plasma samples collected from subjects receiving imatinib. Results The assay requires 4 µL of sample without pre-treatment. The non-linear calibration curve ranges from 0 to 3,000 ng/mL. With automated sample dilution, concentrations of up to 9,000 ng/mL can be quantitated. The AU480 produces the first result in 10 minutes, and up to 400 tests per hour. Repeatability ranged from 2.0 to 6.0% coefficient of variation (CV), and within-laboratory reproducibility ranged from 2.9 to 7.4% CV. Standard curve stability was two weeks and on-board reagent stability was 6 weeks. For clinical samples with imatinib concentrations from 438 – 2,691 ng/mL, method comparison with LC-MS/MS gave a slope of 0.995 with a y-intercept of 24.3 and a correlation coefficient of 0.978. Conclusion The immunoassay is suitable for quantitating imatinib in human plasma, demonstrating good correlation with a physical method. Testing for optimal imatinib exposure can now be performed on routine clinical analyzers. PMID:25551407

  5. Specimen coordinate automated measuring machine/fiducial automated measuring machine

    SciTech Connect

    Hedglen, Robert E.; Jacket, Howard S.; Schwartz, Allan I.

    1991-01-01

    The Specimen coordinate Automated Measuring Machine (SCAMM) and the Fiducial Automated Measuring Machine (FAMM) is a computer controlled metrology system capable of measuring length, width, and thickness, and of locating fiducial marks. SCAMM and FAMM have many similarities in their designs, and they can be converted from one to the other without taking them out of the hot cell. Both have means for: supporting a plurality of samples and a standard; controlling the movement of the samples in the +/- X and Y directions; determining the coordinates of the sample; compensating for temperature effects; and verifying the accuracy of the measurements and repeating as necessary. SCAMM and FAMM are designed to be used in hot cells.

  6. Future of groundwater modeling

    USGS Publications Warehouse

    Langevin, Christian D.; Panday, Sorab

    2012-01-01

    With an increasing need to better manage water resources, the future of groundwater modeling is bright and exciting. However, while the past can be described and the present is known, the future of groundwater modeling, just like a groundwater model result, is highly uncertain and any prediction is probably not going to be entirely representative. Thus we acknowledge this as we present our vision of where groundwater modeling may be headed.

  7. Water Sample Concentrator

    ScienceCinema

    Idaho National Laboratory

    2010-01-08

    Automated portable device that concentrates and packages a sample of suspected contaminated water for safe, efficient transport to a qualified analytical laboratory. This technology will help safeguard against pathogen contamination or chemical and biolog

  8. Water Sample Concentrator

    SciTech Connect

    Idaho National Laboratory

    2009-07-21

    Automated portable device that concentrates and packages a sample of suspected contaminated water for safe, efficient transport to a qualified analytical laboratory. This technology will help safeguard against pathogen contamination or chemical and biolog

  9. Halon-1301, a new Groundwater Age Tracer

    NASA Astrophysics Data System (ADS)

    Beyer, Monique; van der Raaij, Rob; Morgenstern, Uwe; Jackson, Bethanna

    2015-04-01

    Groundwater dating is an important tool to assess groundwater resources in regards to direction and time scale of groundwater flow and recharge and to assess contamination risks and manage remediation. To infer groundwater age information, a combination of different environmental tracers, such as tritium and SF6, are commonly used. However ambiguous age interpretations are often faced, due to a limited set of available tracers and limitations of each tracer method when applied alone. There is a need for additional, complementary groundwater age tracers. We recently discovered that Halon-1301, a water soluble and entirely anthropogenic gaseous substance, may be a promising candidate [Beyer et al, 2014]. Halon-1301 can be determined along with SF6, SF5CF3 and CFC-12 in groundwater using a gas chromatography setup with attached electron capture detector developed by Busenberg and Plummer [2008]. Halon-1301 has not been assessed in groundwater. This study assesses the behaviour of Halon-1301 in water and its suitability as a groundwater age tracer. We determined Halon-1301 in 17 groundwater and various modern (river) waters sites located in 3 different groundwater systems in the Wellington Region, New Zealand. These waters have been previously dated with tritium, CFC-12, CFC-11 and SF6 with mean residence times ranging from 0.5 to over 100 years. The waters range from oxic to anoxic and some show evidence of CFC contamination or degradation. This allows us to assess the different properties affecting the suitability of Halon-1301 as groundwater age tracer, such as its conservativeness in water and local contamination potential. The samples are analysed for Halon-1301 and SF6simultaneously, which allows identification of issues commonly faced when using gaseous tracers such as contamination with modern air during sampling. Overall we found in the assessed groundwater samples Halon-1301 is a feasible new groundwater tracer. No sample indicated significantly elevated

  10. Automated Sampling Procedures Supported by High Persistence of Bacterial Fecal Indicators and Bacteroidetes Genetic Microbial Source Tracking Markers in Municipal Wastewater during Short-Term Storage at 5°C.

    PubMed

    Mayer, R E; Vierheilig, J; Egle, L; Reischer, G H; Saracevic, E; Mach, R L; Kirschner, A K T; Zessner, M; Sommer, R; Farnleitner, A H

    2015-08-01

    Because of high diurnal water quality fluctuations in raw municipal wastewater, the use of proportional autosampling over a period of 24 h at municipal wastewater treatment plants (WWTPs) to evaluate carbon, nitrogen, and phosphorus removal has become a standard in many countries. Microbial removal or load estimation at municipal WWTPs, however, is still based on manually recovered grab samples. The goal of this study was to establish basic knowledge regarding the persistence of standard bacterial fecal indicators and Bacteroidetes genetic microbial source tracking markers in municipal wastewater in order to evaluate their suitability for automated sampling, as the potential lack of persistence is the main argument against such procedures. Raw and secondary treated wastewater of municipal origin from representative and well-characterized biological WWTPs without disinfection (organic carbon and nutrient removal) was investigated in microcosm experiments at 5 and 21°C with a total storage time of 32 h (including a 24-h autosampling component and an 8-h postsampling phase). Vegetative Escherichia coli and enterococci, as well as Clostridium perfringens spores, were selected as indicators for cultivation-based standard enumeration. Molecular analysis focused on total (AllBac) and human-associated genetic Bacteroidetes (BacHum-UCD, HF183 TaqMan) markers by using quantitative PCR, as well as 16S rRNA gene-based next-generation sequencing. The microbial parameters showed high persistence in both raw and treated wastewater at 5°C under the storage conditions used. Surprisingly, and in contrast to results obtained with treated wastewater, persistence of the microbial markers in raw wastewater was also high at 21°C. On the basis of our results, 24-h autosampling procedures with 5°C storage conditions can be recommended for the investigation of fecal indicators or Bacteroidetes genetic markers at municipal WWTPs. Such autosampling procedures will contribute to better

  11. Automated Sampling Procedures Supported by High Persistence of Bacterial Fecal Indicators and Bacteroidetes Genetic Microbial Source Tracking Markers in Municipal Wastewater during Short-Term Storage at 5°C

    PubMed Central

    Mayer, R. E.; Vierheilig, J.; Egle, L.; Reischer, G. H.; Saracevic, E.; Mach, R. L.; Kirschner, A. K. T.; Zessner, M.; Farnleitner, A. H.

    2015-01-01

    Because of high diurnal water quality fluctuations in raw municipal wastewater, the use of proportional autosampling over a period of 24 h at municipal wastewater treatment plants (WWTPs) to evaluate carbon, nitrogen, and phosphorus removal has become a standard in many countries. Microbial removal or load estimation at municipal WWTPs, however, is still based on manually recovered grab samples. The goal of this study was to establish basic knowledge regarding the persistence of standard bacterial fecal indicators and Bacteroidetes genetic microbial source tracking markers in municipal wastewater in order to evaluate their suitability for automated sampling, as the potential lack of persistence is the main argument against such procedures. Raw and secondary treated wastewater of municipal origin from representative and well-characterized biological WWTPs without disinfection (organic carbon and nutrient removal) was investigated in microcosm experiments at 5 and 21°C with a total storage time of 32 h (including a 24-h autosampling component and an 8-h postsampling phase). Vegetative Escherichia coli and enterococci, as well as Clostridium perfringens spores, were selected as indicators for cultivation-based standard enumeration. Molecular analysis focused on total (AllBac) and human-associated genetic Bacteroidetes (BacHum-UCD, HF183 TaqMan) markers by using quantitative PCR, as well as 16S rRNA gene-based next-generation sequencing. The microbial parameters showed high persistence in both raw and treated wastewater at 5°C under the storage conditions used. Surprisingly, and in contrast to results obtained with treated wastewater, persistence of the microbial markers in raw wastewater was also high at 21°C. On the basis of our results, 24-h autosampling procedures with 5°C storage conditions can be recommended for the investigation of fecal indicators or Bacteroidetes genetic markers at municipal WWTPs. Such autosampling procedures will contribute to better

  12. Evaluating Adult Groundwater Education.

    ERIC Educational Resources Information Center

    Gerakis, Argyrios

    1998-01-01

    One-day groundwater education workshops held to educate soil conservation personnel were assessed for effect on participant knowledge using a quasiexperimental design. Participants were tested on their groundwater knowledge and attitude toward groundwater conservation before and after the training. Participant scores improved significantly in only…

  13. Performance evaluation of groundwater model hydrostratigraphy from airborne electromagnetic data and lithological borehole logs

    NASA Astrophysics Data System (ADS)

    Marker, P. A.; Foged, N.; He, X.; Christiansen, A. V.; Refsgaard, J. C.; Auken, E.; Bauer-Gottwein, P.

    2015-09-01

    Large-scale hydrological models are important decision support tools in water resources management. The largest source of uncertainty in such models is the hydrostratigraphic model. Geometry and configuration of hydrogeological units are often poorly determined from hydrogeological data alone. Due to sparse sampling in space, lithological borehole logs may overlook structures that are important for groundwater flow at larger scales. Good spatial coverage along with high spatial resolution makes airborne electromagnetic (AEM) data valuable for the structural input to large-scale groundwater models. We present a novel method to automatically integrate large AEM data sets and lithological information into large-scale hydrological models. Clay-fraction maps are produced by translating geophysical resistivity into clay-fraction values using lithological borehole information. Voxel models of electrical resistivity and clay fraction are classified into hydrostratigraphic zones using k-means clustering. Hydraulic conductivity values of the zones are estimated by hydrological calibration using hydraulic head and stream discharge observations. The method is applied to a Danish case study. Benchmarking hydrological performance by comparison of performance statistics from comparable hydrological models, the cluster model performed competitively. Calibrations of 11 hydrostratigraphic cluster models with 1-11 hydraulic conductivity zones showed improved hydrological performance with an increasing number of clusters. Beyond the 5-cluster model hydrological performance did not improve. Due to reproducibility and possibility of method standardization and automation, we believe that hydrostratigraphic model generation with the proposed method has important prospects for groundwater models used in water resources management.

  14. Automated sample plan selection for OPC modeling

    NASA Astrophysics Data System (ADS)

    Casati, Nathalie; Gabrani, Maria; Viswanathan, Ramya; Bayraktar, Zikri; Jaiswal, Om; DeMaris, David; Abdo, Amr Y.; Oberschmidt, James; Krause, Andreas

    2014-03-01

    It is desired to reduce the time required to produce metrology data for calibration of Optical Proximity Correction (OPC) models and also maintain or improve the quality of the data collected with regard to how well that data represents the types of patterns that occur in real circuit designs. Previous work based on clustering in geometry and/or image parameter space has shown some benefit over strictly manual or intuitive selection, but leads to arbitrary pattern exclusion or selection which may not be the best representation of the product. Forming the pattern selection as an optimization problem, which co-optimizes a number of objective functions reflecting modelers' insight and expertise, has shown to produce models with equivalent quality to the traditional plan of record (POR) set but in a less time.

  15. Dispersive liquid-liquid microextraction combined with semi-automated in-syringe back extraction as a new approach for the sample preparation of ionizable organic compounds prior to liquid chromatography.

    PubMed

    Melwanki, Mahaveer B; Fuh, Ming-Ren

    2008-07-11

    Dispersive liquid-liquid microextraction (DLLME) followed by a newly designed semi-automated in-syringe back extraction technique has been developed as an extraction methodology for the extraction of polar organic compounds prior to liquid chromatography (LC) measurement. The method is based on the formation of tiny droplets of the extractant in the sample solution using water-immiscible organic solvent (extractant) dissolved in a water-miscible organic dispersive solvent. Extraction of the analytes from aqueous sample into the dispersed organic droplets took place. The extracting organic phase was separated by centrifuging and the sedimented phase was withdrawn into a syringe. Then in-syringe back extraction was utilized to extract the analytes into an aqueous solution prior to LC analysis. Clenbuterol (CB), a basic organic compound used as a model, was extracted from a basified aqueous sample using 25 microL tetrachloroethylene (TCE, extraction solvent) dissolved in 500 microL acetone (as a dispersive solvent). After separation of the organic extracting phase by centrifuging, CB enriched in TCE phase was back extracted into 10 microL of 1% aqueous formic acid (FA) within the syringe. Back extraction was facilitated by repeatedly moving the plunger back and forth within the barrel of syringe, assisted by a syringe pump. Due to the plunger movement, a thin organic film is formed on the inner layer of the syringe that comes in contact with the acidic aqueous phase. Here, CB, a basic analyte, will be protonated and back extracted into FA. Various parameters affecting the extraction efficiency, viz., choice of extraction and dispersive solvent, salt effect, speed of syringe pump, back extraction time period, effect of concentration of base and acid, were evaluated. Under optimum conditions, precision, linearity (correlation coefficient, r(2)=0.9966 over the concentration range of 10-1000 ng mL(-1) CB), detection limit (4.9 ng mL(-1)), enrichment factor (175), relative

  16. Environmental monitoring final report: groundwater chemical analyses

    SciTech Connect

    Not Available

    1984-02-01

    This report presents the results of analyses of groundwater qualtiy at the SRC-I Demonstration Plant site in Newman, Kentucky. Samples were obtained from a network of 23 groundwater observation wells installed during previous studies. The groundwater was well within US EPA Interim Primary Drinking Water Standards for trace metals, radioactivity, and pesticides, but exceeded the standard for coliform bacteria. Several US EPA Secondary Drinking Water Standards were exceeded, namely, manganese, color, iron, and total dissolved solids. Based on the results, Dames and Moore recommend that all wells should be sterilized and those wells built in 1