Science.gov

Sample records for biology research community

  1. Community-Based Participatory Research Integrates Behavioral and Biological Research to Achieve Health Equity for Native Hawaiians.

    PubMed

    Townsend, Claire K M; Dillard, Adrienne; Hosoda, Kelsea K; Maskarinec, Gregory G; Maunakea, Alika K; Yoshimura, Sheryl R; Hughes, Claire; Palakiko, Donna-Marie; Kehauoha, Bridget Puni; Kaholokula, Joseph Keawe'aimoku

    2015-01-01

    Native Hawaiians bear a disproportionate burden of type-2 diabetes and related complications compared to all other groups in Hawai'i (e.g., Whites, Japanese, Korean). Distrust in these communities is a significant barrier to participation in epigenetic research studies seeking to better understand disease processes. The purpose of this paper is to describe the community-based participatory research (CBPR) approach and research process we employed to integrate behavior and biological sciences with community health priorities. A CBPR approach was used to test a 3-month evidence-based, diabetes self-management intervention (N = 65). To investigate the molecular mechanisms linking inflammation with glucose homeostasis, a subset of participants (n = 16) provided peripheral blood mononuclear cells. Community and academic researchers collaborated on research design, assessment protocols, and participant recruitment, prioritizing participants' convenience and education and strictly limiting the use of the data collected. Preliminary results indicate significant changes in DNA methylation at gene regions associated with inflammation and diabetes signaling pathways and significant improvements in hemoglobin A1c, self-care activities, and diabetes distress and understanding. This study integrates community, behavioral, and epigenomic expertise to better understand the outcomes of a diabetes self-management intervention. Key lessons learned suggest the studies requiring biospecimen collection in indigenous populations require community trust of the researchers, mutual benefits for the community and researchers, and for the researchers to prioritize the community's needs. CBPR may be an important tool in providing communities the voice and protections to participate in studies requiring biospecimens. PMID:26703660

  2. Bacterial Community Structure in Geographically Distributed Biological

    E-print Network

    Alvarez-Cohen, Lisa

    cycles (1). Biological wastewater treatment, utilization processes such as activated sludge (ASBacterial Community Structure in Geographically Distributed Biological Wastewater Treatment of the microbial communities within biological wastewater treatment reactors is incomplete due to limitations

  3. Systems biology of Microbial Communities

    SciTech Connect

    Navid, A; Ghim, C; Fenley, A; Yoon, S; Lee, S; Almaas, E

    2008-04-11

    Microbes exist naturally in a wide range of environments, spanning the extremes of high acidity and high temperature to soil and the ocean, in communities where their interactions are significant. We present a practical discussion of three different approaches for modeling microbial communities: rate equations, individual-based modeling, and population dynamics. We illustrate the approaches with detailed examples. Each approach is best fit to different levels of system representation, and they have different needs for detailed biological input. Thus, this set of approaches is able to address the operation and function of microbial communities on a wide range of organizational levels.

  4. Space biology research development

    NASA Technical Reports Server (NTRS)

    Bonting, Sjoerd L.

    1993-01-01

    The purpose of the Search for Extraterrestrial Intelligence (SETI) Institute is to conduct and promote research related activities regarding the search for extraterrestrial life, particularly intelligent life. Such research encompasses the broad discipline of 'Life in the Universe', including all scientific and technological aspects of astronomy and the planetary sciences, chemical evolution, the origin of life, biological evolution, and cultural evolution. The primary purpose was to provide funding for the Principal Investigator to collaborate with the personnel of the SETI Institute and the NASA-Ames Research center in order to plan and develop space biology research on and in connection with Space Station Freedom; to promote cooperation with the international partners in the space station; to conduct a study on the use of biosensors in space biology research and life support system operation; and to promote space biology research through the initiation of an annual publication 'Advances in Space Biology and Medicine'.

  5. Encouraging Student Biological Research.

    ERIC Educational Resources Information Center

    Frame, Kathy, Ed.; Hays, Rachel, Ed.; Mack, Alison, Ed.

    This publication encourages student involvement in biological research through student research with the cooperation of teachers and scientists. The contents of the book are divided into two sections. The first section introduces students to research investigations and includes: (1) "How the Investigations Are Set Up and the Rationale Behind Their…

  6. WHITHER BIOLOGICAL DATABASE RESEARCH?

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We consider how the landscape of biological databases may evolve in the future, and what research is needed to realize this evolution. We suggest today's dispersal of diverse resources will only increase as the number and size of those resources, driving the need for semantic interoperability even ...

  7. Research Councils UK Synthetic biology

    E-print Network

    Crowther, Paul

    Research Councils UK Synthetic biology #12;Synthetic biology Research funded by the Research, bioinformatics approaches and DNA synthesis, all of which are central to the current field of synthetic biology them commercially. Synthetic biology is one of `Eight Great Technologies' identified by the Chancellor

  8. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.

    PubMed

    Galdzicki, Michal; Clancy, Kevin P; Oberortner, Ernst; Pocock, Matthew; Quinn, Jacqueline Y; Rodriguez, Cesar A; Roehner, Nicholas; Wilson, Mandy L; Adam, Laura; Anderson, J Christopher; Bartley, Bryan A; Beal, Jacob; Chandran, Deepak; Chen, Joanna; Densmore, Douglas; Endy, Drew; Grünberg, Raik; Hallinan, Jennifer; Hillson, Nathan J; Johnson, Jeffrey D; Kuchinsky, Allan; Lux, Matthew; Misirli, Goksel; Peccoud, Jean; Plahar, Hector A; Sirin, Evren; Stan, Guy-Bart; Villalobos, Alan; Wipat, Anil; Gennari, John H; Myers, Chris J; Sauro, Herbert M

    2014-06-01

    The re-use of previously validated designs is critical to the evolution of synthetic biology from a research discipline to an engineering practice. Here we describe the Synthetic Biology Open Language (SBOL), a proposed data standard for exchanging designs within the synthetic biology community. SBOL represents synthetic biology designs in a community-driven, formalized format for exchange between software tools, research groups and commercial service providers. The SBOL Developers Group has implemented SBOL as an XML/RDF serialization and provides software libraries and specification documentation to help developers implement SBOL in their own software. We describe early successes, including a demonstration of the utility of SBOL for information exchange between several different software tools and repositories from both academic and industrial partners. As a community-driven standard, SBOL will be updated as synthetic biology evolves to provide specific capabilities for different aspects of the synthetic biology workflow. PMID:24911500

  9. Reflections on Community College Research

    ERIC Educational Resources Information Center

    Floyd, Deborah L.; Antczak, Laura

    2010-01-01

    Focused researchers have filled the important role of documenting the evolution of community colleges, which have changing missions and diverse programs, designed around their communities. This article reflects on key works of Council for the Study of Community College (CSCC) members in thematic areas of access, student success, faculty…

  10. Community College Biology Lesson Catalogue.

    ERIC Educational Resources Information Center

    Herrick, Kathie G.

    This catalog contains descriptions of the available biology lessons on PLATO IV, compiled to assist instructors in planning their curricula. Information is provided for 87 lessons in the following areas: experimental tools and techniques; chemical basis of life; cellular structure and function; bioenergetics - enzymes and cellular metabolism;…

  11. Community College Biology Lesson Index.

    ERIC Educational Resources Information Center

    Manteuffel, Mary S., Comp.; Herrick, Kathie, Comp.

    This catalog contains lesson descriptions of the available biology lessons on PLATO IV, compiled to assist instructors in planning their curricula. Information is provided for 87 lessons in the following areas: introductory material on experimental tools and techniques; chemical basis of life; cellular structure and function; reproduction and…

  12. Identifying communities from multiplex biological networks

    PubMed Central

    Brun, Christine

    2015-01-01

    Various biological networks can be constructed, each featuring gene/protein relationships of different meanings (e.g., protein interactions or gene co-expression). However, this diversity is classically not considered and the different interaction categories are usually aggregated in a single network. The multiplex framework, where biological relationships are represented by different network layers reflecting the various nature of interactions, is expected to retain more information. Here we assessed aggregation, consensus and multiplex-modularity approaches to detect communities from multiple network sources. By simulating random networks, we demonstrated that the multiplex-modularity method outperforms the aggregation and consensus approaches when network layers are incomplete or heterogeneous in density. Application to a multiplex biological network containing 4 layers of physical or functional interactions allowed recovering communities more accurately annotated than their aggregated counterparts. Overall, taking into account the multiplexity of biological networks leads to better-defined functional modules. A user-friendly graphical software to detect communities from multiplex networks, and corresponding C source codes, are available at GitHub (https://github.com/gilles-didier/MolTi). PMID:26713261

  13. Biology and Marine Biology Research Areas and Assistantship Application

    E-print Network

    Olszewski Jr., Edward A.

    1 Biology and Marine Biology Research Areas and Assistantship Application Name: LAST FIRST MIDDLE Student ID Number: E-mail Address: IF APPLICABLE Address: STREET CITY STATE ZIP Research Areas Biology and Marine Biology faculty members will accept graduate students to work in the general research areas listed

  14. [Practice relevant research in biological psychiatry].

    PubMed

    Meyer-Lindenberg, A

    2015-11-01

    The practice of psychiatry would be unthinkable without modern psychopharmacology. Drug treatment, especially of severe psychiatric disorders, is often a precondition of community participation, societal reintegration and recovery. Seen in this context it is understandable that biological psychiatry has long been primarily defined by its close interconnection with psychopharmacology and has been perceived this way by practicing physicians. In recent years, however, the concept of what is "biological" has markedly expanded and so has the outreach of this approach into the practice of psychiatry. This article discusses examples showing that biological research methods provide new impulses for individualized medicine, psychotherapy and understanding environmental risks and therefore provide the basis for a preemptive and preventive approach that will be the key to master the challenges posed by the severe burden of mental illness. PMID:26440519

  15. Community-Engaged Research with Community-Based Organizations

    E-print Network

    Mullins, Dyche

    of California San Francisco. http://ctsi.ucsf.edu/files/CE/manual_for_researchers_agencies.pdf Design & Layout: Glenn Wong, GW Graphic Works UCSF CTSI Community Engagement Program #12;COMMUNITY-ENGAGED RESEARCH to the community I would like to engage in research? 15 TOPIC 8 What qualities and skills help a researcher conduct

  16. BMC Evolutionary Biology Research article

    E-print Network

    Fagan, William

    BMC Evolutionary Biology Research article Testing mitochondrial sequences and anonymous nuclear phylogenetic analyses rely on DNA sequence data obtained from single or multiple loci, particularly number not for citation purposes) BioMed Central Open Access #12;DNA (mtDNA) sequences, to elucidate

  17. Space Station Biological Research Project

    NASA Technical Reports Server (NTRS)

    Johnson, C. C.; Wade, C. E.; Givens, J. J.

    1997-01-01

    To meet NASA's objective of using the unique aspects of the space environment to expand fundamental knowledge in the biological sciences, the Space Station Biological Research Project at Ames Research Center is developing, or providing oversight, for two major suites of hardware which will be installed on the International Space Station (ISS). The first, the Gravitational Biology Facility, consists of Habitats to support plants, rodents, cells, aquatic specimens, avian and reptilian eggs, and insects and the Habitat Holding Rack in which to house them at microgravity; the second, the Centrifuge Facility, consists of a 2.5 m diameter centrifuge that will provide acceleration levels between 0.01 g and 2.0 g and a Life Sciences Glovebox. These two facilities will support the conduct of experiments to: 1) investigate the effect of microgravity on living systems; 2) what level of gravity is required to maintain normal form and function, and 3) study the use of artificial gravity as a countermeasure to the deleterious effects of microgravity observed in the crew. Upon completion, the ISS will have three complementary laboratory modules provided by NASA, the European Space Agency and the Japanese space agency, NASDA. Use of all facilities in each of the modules will be available to investigators from participating space agencies. With the advent of the ISS, space-based gravitational biology research will transition from 10-16 day short-duration Space Shuttle flights to 90-day-or-longer ISS increments.

  18. On Measuring Community Participation in Research

    ERIC Educational Resources Information Center

    Khodyakov, Dmitry; Stockdale, Susan; Jones, Andrea; Mango, Joseph; Jones, Felica; Lizaola, Elizabeth

    2013-01-01

    Active participation of community partners in research aspects of community-academic partnered projects is often assumed to have a positive impact on the outcomes of such projects. The value of community engagement in research, however, cannot be empirically determined without good measures of the level of community participation in research

  19. Farmworkers and Pesticides: Community-Based Research.

    ERIC Educational Resources Information Center

    Arcury, Thomas A.; Quandt, Sara A.; McCauley, Linda

    2000-01-01

    A workshop brought together scientists, community organization members, and agency representatives to review community-based research on the environmental health risks of pesticide exposure for migrant farmworkers; to share appropriate, successful community-based research methods and models; and to determine future research directions and needs…

  20. Introduced species can disrupt biological communities and alter biodiversity

    E-print Network

    Holt, Robert D.

    they spread extensively in novel habitats. Biological invasions are an increasing problem in this changing and impact of biological invasions by plants and animals. They can facilitate or limit invasions communities and influence ecosystems undergoing biological invasion. A review of plant and animal invasions

  1. Genome Annotation in a Community College Cell Biology Lab

    ERIC Educational Resources Information Center

    Beagley, C. Timothy

    2013-01-01

    The Biology Department at Salt Lake Community College has used the IMG-ACT toolbox to introduce a genome mapping and annotation exercise into the laboratory portion of its Cell Biology course. This project provides students with an authentic inquiry-based learning experience while introducing them to computational biology and contemporary learning…

  2. Global Biology Research Program: Program plan

    NASA Technical Reports Server (NTRS)

    1983-01-01

    Biological processes which play a dominant role in these cycles which transform and transfer much of this material throughout the biosphere are examined. A greater understanding of planetary biological processes as revealed by the interaction of the biota and the environment. The rationale, scope, research strategy, and research priorities of the global biology is presented.

  3. Space Station Biological Research Project

    NASA Technical Reports Server (NTRS)

    Johnson, Catherine C.; Hargens, Alan R.; Wade, Charles E.

    1995-01-01

    NASA Ames Research Center is responsible for the development of the Space Station Biological Research Project (SSBRP) which will support non-human life sciences research on the International Space Station Alpha (ISSA). The SSBRP is designed to support both basic research to understand the effect of altered gravity fields on biological systems and applied research to investigate the effects of space flight on biological systems. The SSBRP will provide the necessary habitats to support avian and reptile eggs, cells and tissues, plants and rodents. In addition a habitat to support aquatic specimens will be provided by our international partners. Habitats will be mounted in ISSA compatible racks at u-g and will also be mounted on a 2.5 m diameter centrifuge except for the egg incubator which has an internal centrifuge. The 2.5 m centrifuge will provide artificial gravity levels over the range of 0.01 G to 2 G. The current schedule is to launch the first rack in 1999, the Life Sciences glovebox and a second rack early in 2001, a 4 habitat 2.5 in centrifuge later the same year in its own module, and to upgrade the centrifuge to 8 habitats in 2004. The rodent habitats will be derived from the Advanced Animal Habitat currently under development for the Shuttle program and will be capable of housing either rats or mice individually or in groups (6 rats/group and at least 12 mice/group). The egg incubator will be an upgraded Avian Development Facility also developed for the Shuttle program through a Small Business and Innovative Research grant. The Space Tissue Loss cell culture apparatus, developed by Walter Reed Army Institute of Research, is being considered for the cell and tissue culture habitat. The Life Sciences Glovebox is crucial to all life sciences experiments for specimen manipulation and performance of science procedures. It will provide two levels of containment between the work volume and the crew through the use of seals and negative pressure. The glovebox will accommodate use by two crew persons simultaneously and the capability for real time video down-link and data acquisition. In house testbeds and Phase B studies of the centrifuge validated the concepts of vibration isolation and autobalancing systems to meet the ISSA microgravity requirements. The vibration isolation system is effective above the centrifuge rotation frequency while the autobalancing system on the rotor removes vibration at and below the rotation rate. Torque of the Station, induced by spin-up/spindown of the centrifuge, can be minimized by controlling spin-up/spin-down rates. The SSBRP and ISSA will provide the opportunity to perform long-term, repeatable and high quality science. The long duration increments available on the Station will permit multigeneration studies of both plants and animals which have not previously been possible. The u-g habitat racks and the eight habitat centrifuge will accommodate sufficient number of specimens to permit statistically significant sampling of specimens to investigate the time course of adaptation to altered gravity environments. The centrifuge will, for the first time, permit investigators to use gravity itself as a tool to investigate fundamental processes, to investigate the intensity and duration of gravity to maintain normal structure and function, to separate the effects of u-g from other environmental factors and to examine artificial gravity as a potential countermeasure for the physical deconditioning observed during space flight.

  4. Human Health Research Program: Systems biological approaches

    EPA Science Inventory

    Research using systems analytic approaches to integrate biological and toxicological data across scales of biological organization (e.g. molecular, cellular, tissue, organ, full body, population), with the goal of identifying toxicity pathways, biomarkers, and bioindicators for a...

  5. The Biological Flight Research Facility

    NASA Technical Reports Server (NTRS)

    Johnson, Catherine C.

    1991-01-01

    NASA Ames Research Center is building a research facility, the Biological Flight Research Facility (BFRF), to meet the needs of life scientists to study the long-term effects of variable gravity on living systems. The facility will be housed on Space Station Freedom and is anticipated to operate for the lifetime of the station, approximately 30 years. It will allow plant and animal biologists to study the role of gravity, or its absence, at varying gravity intensities for varying periods of time and with various organisms. The principal difference between current Spacelab missions and those on Space Station Freedom, other than length of mission, will be the capability to perform on-orbit science procedures and the capability to simulate earth gravity. Initially, the facility will house plants and rodents in habitats which can be maintained at microgravity or can be placed on a 2.5-m diam centrifuge. However, the facility is also being designed to accommodate future habitats for small primates, avian, and aquatic specimens. The centrifuge will provide 1 g for controls and will also be able to provide gravity from 0.01 to 2.0 g for threshold gravity studies as well as hypergravity studies. The BFRF will provide the means to conduct basic experiments to gain an understanding of the effects of microgravity on the structure and function of plants and animals, as well as investigate the role of gravity as a potential countermeasure for the physiological changes observed in microgravity.

  6. Puerto Rico Sustainable Communities Research Project

    EPA Science Inventory

    The goal of EPA’s Sustainable and Healthy Communities Research Program (SHCRP) is to inform and empower decision?makers to equitably weigh and integrate human health, socio?economic, environmental, and ecological factors to foster community sustainability. Pue...

  7. An Honors Interdisciplinary Community-Based Research Course

    ERIC Educational Resources Information Center

    Dunbar, David; Terlecki, Melissa; Watterson, Nancy; Ratmansky, Lisa

    2013-01-01

    This article describes how two faculty members at Cabrini College--one from biology and the other from psychology--incorporated interdisciplinary community-based research in an honors course on environmental watershed issues. The course, Environmental Psychology, was team-taught in partnership with a local watershed organization, the Valley Creek…

  8. Why infectious disease research needs community ecology.

    PubMed

    Johnson, Pieter T J; de Roode, Jacobus C; Fenton, Andy

    2015-09-01

    Infectious diseases often emerge from interactions among multiple species and across nested levels of biological organization. Threats as diverse as Ebola virus, human malaria, and bat white-nose syndrome illustrate the need for a mechanistic understanding of the ecological interactions underlying emerging infections. We describe how recent advances in community ecology can be adopted to address contemporary challenges in disease research. These analytical tools can identify the factors governing complex assemblages of multiple hosts, parasites, and vectors, and reveal how processes link across scales from individual hosts to regions. They can also determine the drivers of heterogeneities among individuals, species, and regions to aid targeting of control strategies. We provide examples where these principles have enhanced disease management and illustrate how they can be further extended. PMID:26339035

  9. The Biological Flight Research Facility

    NASA Technical Reports Server (NTRS)

    Johnson, Catherine C.

    1993-01-01

    NASA Ames Research Center (ARC) is building a research facility, the Biological Flight Research Facility (BFRF), to meet the needs of life scientists to study the long-term effects of variable gravity on living systems. The facility will be housed on Space Station Freedom and is anticipated to operate for the lifetime of the station, approximately thirty years. It will allow plant and animal biologists to study the role of gravity, or its absence, at varying gravity intensities for varying periods of time and with various organisms. The principal difference between current Spacelab missions and those on Space Station Freedom, other than length of mission, will be the capability to perform on-orbit science procedures and the capability to simulate earth gravity. Initially the facility will house plants and rodents in habitats which can be maintained at microgravity or can be placed on a 2.5 meter diameter centrifuge. However, the facility is also being designed to accommodate future habitats for small primates, avian, and aquatic specimens. The centrifuge will provide 1 g for controls and will also be able to provide gravity from 0.01 to 2.0 g for threshold gravity studies as well as hypergravity studies. Included in the facility are a service unit for providing clean chambers for the specimens and a glovebox for manipulating the plant and animal specimens and for performing experimental protocols. The BFRF will provide the means to conduct basic experiments to gain an understanding of the effects of microgravity on the structure and function of plants and animals, as well as investigate the role of gravity as a potential countermeasure for the physiological changes observed in microgravity.

  10. Biology Education Research: Lessons and Future Directions

    ERIC Educational Resources Information Center

    Singer, Susan R.; Nielsen, Natalie R.; Schweingruber, Heidi A.

    2013-01-01

    Biologists have long been concerned about the quality of undergraduate biology education. Over time, however, biology faculty members have begun to study increasingly sophisticated questions about teaching and learning in the discipline. These scholars, often called biology education researchers, are part of a growing field of inquiry called…

  11. Finding Community: A Guide to Community Research and Action.

    ERIC Educational Resources Information Center

    Jones, W. Ron; And Others

    For those concerned with contemporary social problems, whether as students, members of community groups, or individual citizens, this book attempts not only to describe the issues, but also to offer some starting points for local research and action. As an educational tool, it is based on the belief that a good way to learn about a community is to…

  12. Ian Duggan: Research Interests Invasion Biology

    E-print Network

    Waikato, University of

    Ian Duggan: Research Interests Invasion Biology My research primarily involves the investigation of trends in the invasion process and the exploration of invasion vectors responsible for transportation, and; 2) predicting species that have a high potential for invasion success Consequently

  13. Research Ethics in Sign Language Communities

    ERIC Educational Resources Information Center

    Harris, Raychelle; Holmes, Heidi M.; Mertens, Donna M.

    2009-01-01

    Codes of ethics exist for most professional associations whose members do research on, for, or with sign language communities. However, these ethical codes are silent regarding the need to frame research ethics from a cultural standpoint, an issue of particular salience for sign language communities. Scholars who write from the perspective of…

  14. How-to-Do-It. Community Biology.

    ERIC Educational Resources Information Center

    Stencel, John E.

    1990-01-01

    Described is a project in which students find a living population in their community and either study it in the field or bring it into the laboratory for study. Seven example projects are suggested. (CW)

  15. A Newtonian framework for community detection in undirected biological networks.

    PubMed

    Narayanan, Tejaswini; Subramaniam, Shankar

    2014-02-01

    Community detection is a key problem of interest in network analysis, with applications in a variety of domains such as biological networks, social network modeling, and communication pattern analysis. In this paper, we present a novel framework for community detection that is motivated by a physical system analogy. We model a network as a system of point masses, and drive the process of community detection, by leveraging the Newtonian interactions between the point masses. Our framework is designed to be generic and extensible relative to the model parameters that are most suited for the problem domain. We illustrate the applicability of our approach by applying the Newtonian Community Detection algorithm on protein-protein interaction networks of E. coli , C. elegans, and S. cerevisiae. We obtain results that are comparable in quality to those obtained from the Newman-Girvan algorithm, a widely employed divisive algorithm for community detection. We also present a detailed analysis of the structural properties of the communities produced by our proposed algorithm, together with a biological interpretation using E. coli protein network as a case study. A functional enrichment heat map is constructed with the Gene Ontology functional mapping, in addition to a pathway analysis for each community. The analysis illustrates that the proposed algorithm elicits communities that are not only meaningful from a topological standpoint, but also possess biological relevance. We believe that our algorithm has the potential to serve as a key computational tool for driving therapeutic applications involving targeted drug development for personalized care delivery. PMID:24681920

  16. Professional Learning Communities. Research Brief

    ERIC Educational Resources Information Center

    Williamson, Ronald

    2009-01-01

    The term, "professional learning community" has become so common place in schools that it is used to refer to almost any type of collaborative work. But the "professional learning community" suggested first in the early 1990's described a school where teachers and administrators continuously worked to learn and then act upon what they learned. The…

  17. Biological and Physical Space Research Laboratory 2002 Science Review

    NASA Technical Reports Server (NTRS)

    Curreri, P. A. (Editor); Robinson, M. B. (Editor); Murphy, K. L. (Editor)

    2003-01-01

    With the International Space Station Program approaching core complete, our NASA Headquarters sponsor, the new Code U Enterprise, Biological and Physical Research, is shifting its research emphasis from purely fundamental microgravity and biological sciences to strategic research aimed at enabling human missions beyond Earth orbit. Although we anticipate supporting microgravity research on the ISS for some time to come, our laboratory has been vigorously engaged in developing these new strategic research areas.This Technical Memorandum documents the internal science research at our laboratory as presented in a review to Dr. Ann Whitaker, MSFC Science Director, in July 2002. These presentations have been revised and updated as appropriate for this report. It provides a snapshot of the internal science capability of our laboratory as an aid to other NASA organizations and the external scientific community.

  18. Data integration in biological research: an overview.

    PubMed

    Lapatas, Vasileios; Stefanidakis, Michalis; Jimenez, Rafael C; Via, Allegra; Schneider, Maria Victoria

    2015-12-01

    Data sharing, integration and annotation are essential to ensure the reproducibility of the analysis and interpretation of the experimental findings. Often these activities are perceived as a role that bioinformaticians and computer scientists have to take with no or little input from the experimental biologist. On the contrary, biological researchers, being the producers and often the end users of such data, have a big role in enabling biological data integration. The quality and usefulness of data integration depend on the existence and adoption of standards, shared formats, and mechanisms that are suitable for biological researchers to submit and annotate the data, so it can be easily searchable, conveniently linked and consequently used for further biological analysis and discovery. Here, we provide background on what is data integration from a computational science point of view, how it has been applied to biological research, which key aspects contributed to its success and future directions. PMID:26336651

  19. Fundamental Biological Research on the International Space Station

    NASA Technical Reports Server (NTRS)

    Souza, K. A.; Yost, Bruce; Fletcher, L.; Dalton, Bonnie P. (Technical Monitor)

    2000-01-01

    The fundamental Biology Program of NASA's Life Sciences Division is chartered with enabling and sponsoring research on the International Space Station (ISS) in order to understand the effects of the space flight environment, particularly microgravity, on living systems. To accomplish this goal, NASA Ames Research Center (ARC) has been tasked with managing the development of a number of biological habitats, along with their support systems infrastructure. This integrated suite of habitats and support systems is being designed to support research requirements identified by the scientific community. As such, it will support investigations using cells and tissues, avian eggs, insects, plants, aquatic organisms and rodents. Studies following organisms through complete life cycles and over multiple generations will eventually be possible. As an adjunct to the development of these basic habitats, specific analytical and monitoring technologies are being targeted for maturation to complete the research cycle by transferring existing or emerging analytical techniques, sensors, and processes from the laboratory bench to the ISS research platform.

  20. Space Station Biological Research Project: Reference Experiment Book

    NASA Technical Reports Server (NTRS)

    Johnson, Catherine (Editor); Wade, Charles (Editor)

    1996-01-01

    The Space Station Biological Research Project (SSBRP), which is the combined efforts of the Centrifuge Facility (CF) and the Gravitational Biology Facility (GBF), is responsible for the development of life sciences hardware to be used on the International Space Station to support cell, developmental, and plant biology research. The SSBRP Reference Experiment Book was developed to use as a tool for guiding this development effort. The reference experiments characterize the research interests of the international scientific community and serve to identify the hardware capabilities and support equipment needed to support such research. The reference experiments also serve as a tool for understanding the operational aspects of conducting research on board the Space Station. This material was generated by the science community by way of their responses to reference experiment solicitation packages sent to them by SSBRP scientists. The solicitation process was executed in two phases. The first phase was completed in February of 1992 and the second phase completed in November of 1995. Representing these phases, the document is subdivided into a Section 1 and a Section 2. The reference experiments contained in this document are only representative microgravity experiments. They are not intended to define actual flight experiments. Ground and flight experiments will be selected through the formal NASA Research Announcement (NRA) and Announcement of Opportunity (AO) experiment solicitation, review, and selection process.

  1. The Communication Research Team As Learning Community

    ERIC Educational Resources Information Center

    Janusik, Laura A.; Wolvin, Andrew D.

    2007-01-01

    Colleges and universities have come to recognize that creating smaller learning communities is a useful strategy for engaging undergraduate students. Learning communities can provide students with a sense of identity and with connections to faculty, the institution, and knowledge. Despite their popularity, there is little empirical research that…

  2. Faculty Experiences in a Research Learning Community

    ERIC Educational Resources Information Center

    Holmes, Courtney M.; Kozlowski, Kelly A.

    2014-01-01

    The current study examines the experiences of faculty in a research learning community developed to support new faculty in increasing scholarly productivity. A phenomenological, qualitative inquiry was used to portray the lived experiences of faculty within a learning community. Several themes were found including: accountability, belonging,…

  3. Research Summary Community woodlands: an overview

    E-print Network

    Research Summary Community woodlands: an overview As a result of both public demand and policy analysis and evaluation. "Our community woodland, I was a user before I got involved. And as soon as you go and forests. Rapidly changing policy contexts across Great Britain support the increased involvement of civil

  4. Community College Journal for Research and Planning.

    ERIC Educational Resources Information Center

    Carter, Edith H., Ed.

    1981-01-01

    Designed as a forum for the exchange of information among research and planning professionals, this journal presents articles on institutional research studies and practices. In "The President's Forum," Mantha Mehallis focuses on the changing role of research evaluation and planning in community colleges. Next, Linda Greer, in her article,…

  5. 76 FR 31319 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-05-31

    ... Biological and Environmental Research Advisory Committee AGENCY: Office of Science, Department of Energy... the Biological and Environmental Research Advisory Committee (BERAC). The Federal Advisory Committee..., Office of Biological and Environmental Research, SC-23/Germantown Building, 1000 Independence Avenue,...

  6. 78 FR 77111 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-20

    ... Biological and Environmental Research Advisory Committee AGENCY: Office of Science, Department of Energy..., notice is hereby given that the Biological and Environmental Research Advisory Committee will be renewed... to the Director, Office of Science on the biological and environmental research...

  7. NASA Space Biology Plant Research for 2010-2020

    NASA Technical Reports Server (NTRS)

    Levine, H. G.; Tomko, D. L.; Porterfield, D. M.

    2012-01-01

    The U.S. National Research Council (NRC) recently published "Recapturing a Future for Space Exploration: Life and Physical Sciences Research for a New Era" (http://www.nap.edu/catalog.php?record id=13048), and NASA completed a Space Biology Science Plan to develop a strategy for implementing its recommendations ( http://www.nasa.gov/exploration/library/esmd documents.html). The most important recommendations of the NRC report on plant biology in space were that NASA should: (1) investigate the roles of microbial-plant systems in long-term bioregenerative life support systems, and (2) establish a robust spaceflight program of research analyzing plant growth and physiological responses to the multiple stimuli encountered in spaceflight environments. These efforts should take advantage of recently emerged analytical technologies (genomics, transcriptomics, proteomics, metabolomics) and apply modern cellular and molecular approaches in the development of a vigorous flight-based and ground-based research program. This talk will describe NASA's strategy and plans for implementing these NRC Plant Space Biology recommendations. New research capabilities for Plant Biology, optimized by providing state-of-the-art automated technology and analytical techniques to maximize scientific return, will be described. Flight experiments will use the most appropriate platform to achieve science results (e.g., ISS, free flyers, sub-orbital flights) and NASA will work closely with its international partners and other U.S. agencies to achieve its objectives. One of NASA's highest priorities in Space Biology is the development research capabilities for use on the International Space Station and other flight platforms for studying multiple generations of large plants. NASA will issue recurring NASA Research Announcements (NRAs) that include a rapid turn-around model to more fully engage the biology community in designing experiments to respond to the NRC recommendations. In doing so, NASA's Space Biology research will optimize ISS research utilization, develop and demonstrate technology and hardware that will enable new science, and contribute to the base of fundamental knowledge that will facilitate development of new tools for human space exploration and Earth applications. By taking these steps, NASA will energize the Space Biology user community and advance our knowledge of the effect of the space flight environment on living systems.

  8. Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative

    PubMed Central

    Hucka, Michael; Nickerson, David P.; Bader, Gary D.; Bergmann, Frank T.; Cooper, Jonathan; Demir, Emek; Garny, Alan; Golebiewski, Martin; Myers, Chris J.; Schreiber, Falk; Waltemath, Dagmar; Le Novère, Nicolas

    2015-01-01

    The Computational Modeling in Biology Network (COMBINE) is a consortium of groups involved in the development of open community standards and formats used in computational modeling in biology. COMBINE’s aim is to act as a coordinator, facilitator, and resource for different standardization efforts whose domains of use cover related areas of the computational biology space. In this perspective article, we summarize COMBINE, its general organization, and the community standards and other efforts involved in it. Our goals are to help guide readers toward standards that may be suitable for their research activities, as well as to direct interested readers to relevant communities where they can best expect to receive assistance in how to develop interoperable computational models. PMID:25759811

  9. An Introduction to Community-Based Participatory Research

    ERIC Educational Resources Information Center

    Hergenrather, Kenneth C.; Geishecker, Steve; McGuire-Kuletz, Maureen; Gitlin, David J.; Rhodes, Scott D.

    2010-01-01

    Community-based participatory research (CBPR) has emerged as an approach designed to promote community health and well-being through the establishment and maintenance of research partnerships between communities and academic researchers. Rather than the academic researcher assuming what is best for a community, CBPR utilizes community partnerships…

  10. Biology Education Research Trends in Turkey

    ERIC Educational Resources Information Center

    Gul, Seyda; Sozbilir, Mustafa

    2015-01-01

    This paper reports on a content analysis of 633 biology education research [BER] papers published by Turkish science educators in national and international journals. The findings indicate that more research has been undertaken in environment and ecology, the cell and animal form and functions. In addition learning, teaching and attitudes were in…

  11. Research Challenges and Lessons Learned from Conducting Community-Based Research with the Hmong Community

    PubMed Central

    Kue, Jennifer; Thorburn, Sheryl; Keon, Karen Levy

    2014-01-01

    Background Conducting research with underserved communities with little exposure to research presents a number of challenges and opportunities. Our study used a community-based approach to better understand factors that influence breast and cervical cancer screening among Hmong women. Objective This article shares lessons learned during the process of developing and conducting qualitative research with a Hmong community with limited experience with research. Methods We conducted 17 key informant and 84 in-depth interviews with Hmong women and men. Research team discussions, insights from Hmong research team members, input from our Community Advisory Committee, and project documents were sources of information about the process of conducting research in this community. Results Lessons learned concern including a cultural insider as an investigator; building community partnerships and support; establishing and working with a community advisory committee; hiring and training bilingual, bicultural staff; and using culturally appropriate materials and methods in a small, kinship-based community. We used multiple strategies to ensure this study was conducted in a culturally appropriate manner. Conclusion The lessons learned from our experiences can provide guidance to researchers on methodological and practical issues in conducting research with the Hmong and can inform future research with the Hmong and other similar underserved populations. PMID:25445983

  12. DNASU plasmid and PSI:Biology-Materials repositories: resources to accelerate biological research

    PubMed Central

    Seiler, Catherine Y.; Park, Jin G.; Sharma, Amit; Hunter, Preston; Surapaneni, Padmini; Sedillo, Casey; Field, James; Algar, Rhys; Price, Andrea; Steel, Jason; Throop, Andrea; Fiacco, Michael; LaBaer, Joshua

    2014-01-01

    The mission of the DNASU Plasmid Repository is to accelerate research by providing high-quality, annotated plasmid samples and online plasmid resources to the research community through the curated DNASU database, website and repository (http://dnasu.asu.edu or http://dnasu.org). The collection includes plasmids from grant-funded, high-throughput cloning projects performed in our laboratory, plasmids from external researchers, and large collections from consortia such as the ORFeome Collaboration and the NIGMS-funded Protein Structure Initiative: Biology (PSI:Biology). Through DNASU, researchers can search for and access detailed information about each plasmid such as the full length gene insert sequence, vector information, associated publications, and links to external resources that provide additional protein annotations and experimental protocols. Plasmids can be requested directly through the DNASU website. DNASU and the PSI:Biology-Materials Repositories were previously described in the 2010 NAR Database Issue (Cormier, C.Y., Mohr, S.E., Zuo, D., Hu, Y., Rolfs, A., Kramer, J., Taycher, E., Kelley, F., Fiacco, M., Turnbull, G. et al. (2010) Protein Structure Initiative Material Repository: an open shared public resource of structural genomics plasmids for the biological community. Nucleic Acids Res., 38, D743–D749.). In this update we will describe the plasmid collection and highlight the new features in the website redesign, including new browse/search options, plasmid annotations and a dynamic vector mapping feature that was developed in collaboration with LabGenius. Overall, these plasmid resources continue to enable research with the goal of elucidating the role of proteins in both normal biological processes and disease. PMID:24225319

  13. HIV/AIDS Community-Based Research

    ERIC Educational Resources Information Center

    Trussler, Terry; Marchand, Rick

    2005-01-01

    Community-based research has evolved in the field of HIV/AIDS health promotion as a distinct expression of participatory action research in adult education. The authors of this chapter reflect on more than a decade of local knowledge construction to organize and improve the practice of HIV/AIDS health promotion in a variety of contexts.

  14. PLoS Computational Biology: A New Community Journal

    E-print Network

    at all biological scales, has become a central feature of re- search and discovery in the life scien- ces. This is followed by a series of research articles, each includ- ing a synopsis distinct from the scien- tific

  15. 75 FR 6651 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-10

    ... Biological and Environmental Research Advisory Committee AGENCY: Department of Energy; Office of Science. ACTION: Notice of open meeting. SUMMARY: This notice announces a meeting of the Biological and... of Biological and Environmental Research, SC-23/Germantown Building, 1000 Independence Avenue,...

  16. 78 FR 6087 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-29

    ... Biological and Environmental Research Advisory Committee AGENCY: Office of Science, Department of Energy. ACTION: Notice of Open Meeting. SUMMARY: This notice announces a meeting of the Biological and.... Department of Energy, Office of Science, Office of Biological and Environmental Research,...

  17. 78 FR 12043 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-21

    ... Biological and Environmental Research Advisory Committee AGENCY: Office of Science, Department of Energy. ACTION: Notice of open teleconference. SUMMARY: This notice announces a teleconference of the Biological... Science, Office of Biological and Environmental Research, SC-23/Germantown Building, 1000...

  18. Genome annotation in a community college cell biology lab.

    PubMed

    Beagley, C Timothy

    2013-01-01

    The Biology Department at Salt Lake Community College has used the IMG-ACT toolbox to introduce a genome mapping and annotation exercise into the laboratory portion of its Cell Biology course. This project provides students with an authentic inquiry-based learning experience while introducing them to computational biology and contemporary learning skills. Additionally, the project strengthens student understanding of the scientific method and contributes to student learning gains in curricular objectives centered around basic molecular biology, specifically, the Central Dogma. Importantly, inclusion of this project in the laboratory course provides students with a positive learning environment and allows for the use of cooperative learning strategies to increase overall student success. PMID:23382125

  19. Research Experiences in Community College Science Programs

    NASA Astrophysics Data System (ADS)

    Beauregard, A.

    2011-12-01

    The benefits of student access to scientific research opportunities and the use of data in curriculum and student inquiry-driven approaches to teaching as effective tools in science instruction are compelling (i.e., Ledley, et al., 2008; Gawel & Greengrove, 2005; Macdonald, et al., 2005; Harnik & Ross. 2003). Unfortunately, these experiences are traditionally limited at community colleges due to heavy faculty teaching loads, a focus on teaching over research, and scarce departmental funds. Without such hands-on learning activities, instructors may find it difficult to stimulate excitement about science in their students, who are typically non-major and nontraditional. I present two different approaches for effectively incorporating research into the community college setting that each rely on partnerships with other institutions. The first of these is a more traditional approach for providing research experiences to undergraduate students, though such experiences are limited at community colleges, and involves student interns working on a research project under the supervision of a faculty member. Specifically, students participate in a water quality assessment study of two local bayous. Students work on different aspects of the project, including water sample collection, bio-assay incubation experiments, water quality sample analysis, and collection and identification of phytoplankton. Over the past four years, nine community college students, as well as two undergraduate students and four graduate students from the local four-year university have participated in this research project. Aligning student and faculty research provides community college students with the unique opportunity to participate in the process of active science and contribute to "real" scientific research. Because students are working in a local watershed, these field experiences provide a valuable "place-based" educational opportunity. The second approach links cutting-edge oceanographic research with my community college students by partnering with a research oceanographer. Through this partnership, students have had access to an active oceanographic researcher through classroom visits, use of data in curriculum, and research/cruise progress updates. With very little research activity currently going on at the community college, this "window" into scientific research is invaluable. Another important aspect of this project is the development of a summer internship program that has allowed four community college students to work directly with an oceanographer in her lab for ten weeks. This connection of community college students with world-class scientists in the field promotes better understanding of research and potentially may encourage more students to major in the sciences. In either approach, the interaction with scientists at different stages of their careers, from undergraduate and graduate students at universities to post docs and research scientists, also provides community college students with the opportunity to gain insight into possible career pathways. For both majors and non-majors, a key outcome of such experiences will be gaining experience in using inquiry and reasoning through the scientific method and becoming comfortable with data and technology.

  20. Evaluation of a workshop to improve community involvement in community-based participatory research efforts

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Community based participatory research (CBPR) is a collaborative approach to research that has gained attention in health and public health research. Community members and researchers partnering in a CBPR project recognized the need for community education about the research process and research eth...

  1. Detection of Composite Communities in Multiplex Biological Networks

    PubMed Central

    Bennett, Laura; Kittas, Aristotelis; Muirhead, Gareth; Papageorgiou, Lazaros G.; Tsoka, Sophia

    2015-01-01

    The detection of community structure is a widely accepted means of investigating the principles governing biological systems. Recent efforts are exploring ways in which multiple data sources can be integrated to generate a more comprehensive model of cellular interactions, leading to the detection of more biologically relevant communities. In this work, we propose a mathematical programming model to cluster multiplex biological networks, i.e. multiple network slices, each with a different interaction type, to determine a single representative partition of composite communities. Our method, known as SimMod, is evaluated through its application to yeast networks of physical, genetic and co-expression interactions. A comparative analysis involving partitions of the individual networks, partitions of aggregated networks and partitions generated by similar methods from the literature highlights the ability of SimMod to identify functionally enriched modules. It is further shown that SimMod offers enhanced results when compared to existing approaches without the need to train on known cellular interactions. PMID:26012716

  2. Organizing Community-Based Data Standards: Lessons from Developing a Successful Open Standard in Systems Biology

    NASA Astrophysics Data System (ADS)

    Hucka, M.

    2015-09-01

    In common with many fields, including astronomy, a vast number of software tools for computational modeling and simulation are available today in systems biology. This wealth of resources is a boon to researchers, but it also presents interoperability problems. Despite working with different software tools, researchers want to disseminate their work widely as well as reuse and extend the models of other researchers. This situation led in the year 2000 to an effort to create a tool-independent, machine-readable file format for representing models: SBML, the Systems Biology Markup Language. SBML has since become the de facto standard for its purpose. Its success and general approach has inspired and influenced other community-oriented standardization efforts in systems biology. Open standards are essential for the progress of science in all fields, but it is often difficult for academic researchers to organize successful community-based standards. I draw on personal experiences from the development of SBML and summarize some of the lessons learned, in the hope that this may be useful to other groups seeking to develop open standards in a community-oriented fashion.

  3. Governing through community allegiance: a qualitative examination of peer research in community-based participatory research.

    PubMed

    Guta, Adrian; Flicker, Sarah; Roche, Brenda

    2013-12-01

    The disappointing results of many public health interventions have been attributed in part to the lack of meaningful community engagement in the planning, implementation, and evaluation of these initiatives. Community-based participatory research (CBPR) has emerged as an alternative research paradigm that directly involves community members in all aspects of the research process. Their involvement is often said to be an empowering experience that builds capacity. In this paper, we interrogate these assumptions, drawing on interview data from a qualitative study investigating the experiences of 18 peer researchers (PRs) recruited from nine CBPR studies in Toronto, Canada. These individuals brought to their respective projects experience of homelessness, living with HIV, being an immigrant or refugee, identifying as transgender, and of having a mental illness. The reflections of PRs are compared to those of other research team members collected in separate focus groups. Findings from these interviews are discussed with an attention to Foucault's concept of 'governmentality', and compared against popular community-based research principles developed by Israel and colleagues. While PRs spoke about participating in CBPR initiatives to share their experience and improve conditions for their communities, these emancipatory goals were often subsumed within corporatist research environments that limited participation. Overall, this study offers a much-needed theoretical engagement with this popular research approach and raises critical questions about the limits of community engagement in collaborative public health research. PMID:24273389

  4. Governing through community allegiance: a qualitative examination of peer research in community-based participatory research

    PubMed Central

    Guta, Adrian; Flicker, Sarah; Roche, Brenda

    2013-01-01

    The disappointing results of many public health interventions have been attributed in part to the lack of meaningful community engagement in the planning, implementation, and evaluation of these initiatives. Community-based participatory research (CBPR) has emerged as an alternative research paradigm that directly involves community members in all aspects of the research process. Their involvement is often said to be an empowering experience that builds capacity. In this paper, we interrogate these assumptions, drawing on interview data from a qualitative study investigating the experiences of 18 peer researchers (PRs) recruited from nine CBPR studies in Toronto, Canada. These individuals brought to their respective projects experience of homelessness, living with HIV, being an immigrant or refugee, identifying as transgender, and of having a mental illness. The reflections of PRs are compared to those of other research team members collected in separate focus groups. Findings from these interviews are discussed with an attention to Foucault's concept of ‘governmentality’, and compared against popular community-based research principles developed by Israel and colleagues. While PRs spoke about participating in CBPR initiatives to share their experience and improve conditions for their communities, these emancipatory goals were often subsumed within corporatist research environments that limited participation. Overall, this study offers a much-needed theoretical engagement with this popular research approach and raises critical questions about the limits of community engagement in collaborative public health research. PMID:24273389

  5. Current dichotomy between traditional molecular biological and omic research in cancer biology and pharmacology.

    PubMed

    Reinhold, William C

    2015-12-10

    There is currently a split within the cancer research community between traditional molecular biological hypothesis-driven and the more recent "omic" forms or research. While the molecular biological approach employs the tried and true single alteration-single response formulations of experimentation, the omic employs broad-based assay or sample collection approaches that generate large volumes of data. How to integrate the benefits of these two approaches in an efficient and productive fashion remains an outstanding issue. Ideally, one would merge the understandability, exactness, simplicity, and testability of the molecular biological approach, with the larger amounts of data, simultaneous consideration of multiple alterations, consideration of genes both of known interest along with the novel, cross-sample comparisons among cell lines and patient samples, and consideration of directed questions while simultaneously gaining exposure to the novel provided by the omic approach. While at the current time integration of the two disciplines remains problematic, attempts to do so are ongoing, and will be necessary for the understanding of the large cell line screens including the Developmental Therapeutics Program's NCI-60, the Broad Institute's Cancer Cell Line Encyclopedia, and the Wellcome Trust Sanger Institute's Cancer Genome Project, as well as the the Cancer Genome Atlas clinical samples project. Going forward there is significant benefit to be had from the integration of the molecular biological and the omic forms or research, with the desired goal being improved translational understanding and application. PMID:26677427

  6. Current dichotomy between traditional molecular biological and omic research in cancer biology and pharmacology

    PubMed Central

    Reinhold, William C

    2015-01-01

    There is currently a split within the cancer research community between traditional molecular biological hypothesis-driven and the more recent “omic” forms or research. While the molecular biological approach employs the tried and true single alteration-single response formulations of experimentation, the omic employs broad-based assay or sample collection approaches that generate large volumes of data. How to integrate the benefits of these two approaches in an efficient and productive fashion remains an outstanding issue. Ideally, one would merge the understandability, exactness, simplicity, and testability of the molecular biological approach, with the larger amounts of data, simultaneous consideration of multiple alterations, consideration of genes both of known interest along with the novel, cross-sample comparisons among cell lines and patient samples, and consideration of directed questions while simultaneously gaining exposure to the novel provided by the omic approach. While at the current time integration of the two disciplines remains problematic, attempts to do so are ongoing, and will be necessary for the understanding of the large cell line screens including the Developmental Therapeutics Program’s NCI-60, the Broad Institute’s Cancer Cell Line Encyclopedia, and the Wellcome Trust Sanger Institute’s Cancer Genome Project, as well as the the Cancer Genome Atlas clinical samples project. Going forward there is significant benefit to be had from the integration of the molecular biological and the omic forms or research, with the desired goal being improved translational understanding and application. PMID:26677427

  7. POLLUTION PREVENTION RESEARCH WITHIN THE FEDERAL COMMUNITY

    EPA Science Inventory

    One of the primary ongoing programs for promotion and encouragement of pollution prevention research is a cooperative program between the U.S. Environmental Protection Agency (EPA) and the Federal community at large. EPA?s Waste Reduction Evaluations At Federal Sites (WREAFS) Pro...

  8. BULLETIN Serving the International Materials Research Community

    E-print Network

    Dao, Ming

    BULLETIN Serving the International Materials Research Community A Publication of the Materials biomechanical properties. We begin with a brief overview of the healthy RBC structure that produces-dimensional network of spectrin molecules. The composite prop- erties of the phospholipid bilayer and spectrin network

  9. Introduction Bridging Community Dental Practitioners to Research

    E-print Network

    Nicholson, Bruce J.

    ®® Introduction Bridging Community Dental Practitioners to Research: The South Texas Oral Health-induced osteonecrosis of the jaw affect clinical practice among dentists: a study from the South Texas Oral Health Texas Oral Health Network (STOHN). Texas Dental Journal. 2011.1031-1038. Colleen Dolan, MA, Rahma Mungia

  10. POLLUTION RESEARCH WITHIN THE FEDERAL COMMUNITY

    EPA Science Inventory

    This project summary describes the U.S. Environmental Protection Agency (EPA) Waste Reduction Evaluations at Federal Sites (WREAFS) program to support pollution prevention (P2) research throughout the Federal community, and the current status on all projects as of September 1994...

  11. 77 FR 55201 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-09-07

    ... Biological and Environmental Research Advisory Committee AGENCY: Department of Energy, Office of Science... and Environmental Research Advisory Committee (BERAC). The Federal Advisory Committee Act (Pub. L. 92... Science, Office of Biological and Environmental Research, SC-23/Germantown Building, 1000...

  12. Biologically Inspired Micro-Flight Research

    NASA Technical Reports Server (NTRS)

    Raney, David L.; Waszak, Martin R.

    2003-01-01

    Natural fliers demonstrate a diverse array of flight capabilities, many of which are poorly understood. NASA has established a research project to explore and exploit flight technologies inspired by biological systems. One part of this project focuses on dynamic modeling and control of micro aerial vehicles that incorporate flexible wing structures inspired by natural fliers such as insects, hummingbirds and bats. With a vast number of potential civil and military applications, micro aerial vehicles represent an emerging sector of the aerospace market. This paper describes an ongoing research activity in which mechanization and control concepts for biologically inspired micro aerial vehicles are being explored. Research activities focusing on a flexible fixed- wing micro aerial vehicle design and a flapping-based micro aerial vehicle concept are presented.

  13. MTL ANNUAL RESEARCH REPORT 2014 Biological & Medical 121 Biological, Medical Devices

    E-print Network

    Reif, Rafael

    MTL ANNUAL RESEARCH REPORT 2014 Biological & Medical 121 Biological, Medical Devices and Systems........................................................................................143 #12;122 Biological & Medical MTL ANNUAL RESEARCH REPORT 2014 #12;MTL ANNUAL RESEARCH REPORT 2014 Biological & Medical 123 Vital signs such as heart rate, blood pressure, blood ox- ygenation, cardiac output

  14. NASA Specialized Center of Research and Training (NSCORT) in Gravitational Biology

    NASA Technical Reports Server (NTRS)

    Mclntire, Larry V.; Rudolph, Frederick B.

    1996-01-01

    The mission of our NSCORT is to investigate the effects of gravity and other environmental factors on biological function at the cellular and molecular level. The research efforts, training opportunities, and scientific exchange will promote the expansion of a scientific peer group well-educated in space-related biological issues. This will stimulate the interest of the larger scientific community and insure the continuing development of rigorous flight investigations in Gravitational Biology.

  15. Sharing Data from Large-scale Biological Research Projects

    E-print Network

    Maizels, Rick

    to the scientific research community in general. While not all were in a position to make commitments, the scientific community should understand that pre-publication data release needs active community- wide support for the broad scientific community. Recent examples of community resource projects include the International

  16. Research in thermal biology: Burning questions for coldwater stream fishes

    SciTech Connect

    McCullough, Dr. Dale; Bartholow, Dr. John; Jager, Yetta; al., et.

    2009-01-01

    With the increasing appreciation of global warming impacts on ecological systems in addition to the myriad of land management effects on water quality, the number of literature citations dealing with the effects of water temperature on freshwater fish has escalated in the past decade. Given the many biological scales at which water temperature effects have been studied and the growing need to integrate knowledge from multiple disciplines of thermal biology to fully protect beneficial uses, we held that a survey of the most promising recent developments and an expression of some of the remaining unanswered questions with significant management implications would best be approached collectively by a diverse research community. We have identified five specific topic areas of renewed research where new techniques and critical thought could benefit coldwater stream fishes (particularly salmonids): molecular, organism, population/species, community and ecosystem, and policy issues in water quality. Our hope is that information gained through examination of recent research fronts linking knowledge at various scales will prove useful in managing water quality at a basin level to protect fish populations and whole ecosystems. Standards of the past were based largely on incipient lethal and optimum growth rate temperatures for fish species, while future standards should consider all integrated thermal impacts to the organism and ecosystem.

  17. Research in thermal biology: Burning questions for coldwater stream fishes

    USGS Publications Warehouse

    McCullough, D.A.; Bartholow, J.M.; Jager, H.I.; Beschta, R.L.; Cheslak, E.F.; Deas, M.L.; Ebersole, J.L.; Foott, J.S.; Johnson, S.L.; Marine, K.R.; Mesa, M.G.; Petersen, J.H.; Souchon, Y.; Tiffan, K.F.; Wurtsbaugh, W.A.

    2009-01-01

    With the increasing appreciation of global warming impacts on ecological systems, in addition to the myriad of land management effects on water quality, the number of literature citations dealing with the effects of water temperature on freshwater fish has escalated in the past decade. Given the many biological scales at which water temperature effects have been studied, and the growing need to integrate knowledge from multiple disciplines of thermal biology to fully protect beneficial uses, we held that a survey of the most promising recent developments and an expression of some of the remaining unanswered questions with significant management implications would best be approached collectively by a diverse research community. We have identified five specific topic areas of renewed research where new techniques and critical thought could benefit coldwater stream fishes (particularly salmonids): molecular, organism, population/species, community and ecosystem, and policy issues in water quality. Our hope is that information gained through examination of recent research fronts linking knowledge at various scales will prove useful in managing water quality at a basin level to protect fish populations and whole ecosystems. Standards of the past were based largely on incipient lethal and optimum growth rate temperatures for fish species, while future standards should consider all integrated thermal impacts to the organism and ecosystem. ?? Taylor and Francis Group, LLC.

  18. Experimental Data from the Proteomics Research Center for Integrative Biology

    DOE Data Explorer

    Smith, Richard D.

    The possible roles and importance of proteomics are rapidly growing across essentially all areas of biological research. The precise and comprehensive measurement of levels of expressed proteins and their modified forms can provide new insights into the molecular nature of cell-signaling pathways and networks, the cell cycle, cellular differentiation, and other processes relevant to understanding human health and the progression of various disease states. The ability to characterize protein complexes complements this capability, allowing hypotheses to be tested and the biological system operation to be defined. The Proteomics Research Center for Integrative Biology is a national user facility established and funded by the National Institute of General Medical Sciences component of the National Institutes of Health. This Center has been established to serve the biomedical research community by developing and integrating new proteomic technologies for collaborative and service studies, disseminating the new technologies, and training scientists in their use. The Center is housed in DOE’s William R. Wiley Environmental Molecular Sciences Laboratory (EMSL) at the Pacific Northwest National Laboratory.

  19. Biological communities at the Florida Escarpment resemble hydrothermal vent taxa

    SciTech Connect

    Paull, C.K.; Hecker, B.; Commeau, R.; Freeman-Lynde, R.P.; Neumann, C.; Corso, W.P.; Golubic, S.; Hook, J.E.; Sikes, E.; Curray, J.

    1984-11-23

    Dense biological communities of large epifaunal taxa similar to those found along ridge crest vents at the East Pacific Rise were discovered in the abyssal Gulf of Mexico. These assemblages occur on a passive continental margin at the base of the Florida Escarpment, the interface between the relatively impermeable hemipelagic clays of the distal Mississippi Fan and the jointed Cretaceous limestone of Florida Platform. The fauna apparently is nourished by sulfide rich hypersaline waters seeping out at near ambient temperatures onto the sea floor. 16 references, 3 figures.

  20. Biological communities at the Florida Escarpment resemble hydrothermal vent taxa

    USGS Publications Warehouse

    Paull, C.K.; Hecker, Barbara; Commeau, R.; Freeman-Lynde, R. P.; Neumann, C.; Corso, W.P.; Golubic, S.; Hook, J.E.; Sikes, E.; Curray, J.

    1984-01-01

    Dense biological communities of large epifaunal taxa similar to those found along ridge crest vents at the East Pacific Rise were discovered in the abyssal Gulf of Mexico. These assemblages occur on a passive continental margin at the base of the Florida Escarpment, the interface between the relatively impermeable hemipelagic clays of the distal Mississippi Fan and the jointed Cretaceous limestone of the Florida Platform. The fauna apparently is nourished by sulfide rich hypersaline waters seeping out at near ambient temperatures onto the sea floor.

  1. IET Synthetic Biology To date, biological research has focused on the analysis of

    E-print Network

    Haseloff, Jim

    Editorial IET Synthetic Biology To date, biological research has focused on the analysis for a fundamental rethink in our approach to biology and its application. Synthetic biology is the discipline of synthetic systems requires the recruitment of engineering principles to biology. In principle, simple

  2. Biological effectiveness of neutrons: Research needs

    SciTech Connect

    Casarett, G.W.; Braby, L.A.; Broerse, J.J.; Elkind, M.M.; Goodhead, D.T.; Oleinick, N.L.

    1994-02-01

    The goal of this report was to provide a conceptual plan for a research program that would provide a basis for determining more precisely the biological effectiveness of neutron radiation with emphasis on endpoints relevant to the protection of human health. This report presents the findings of the experts for seven particular categories of scientific information on neutron biological effectiveness. Chapter 2 examines the radiobiological mechanisms underlying the assumptions used to estimate human risk from neutrons and other radiations. Chapter 3 discusses the qualitative and quantitative models used to organize and evaluate experimental observations and to provide extrapolations where direct observations cannot be made. Chapter 4 discusses the physical principles governing the interaction of radiation with biological systems and the importance of accurate dosimetry in evaluating radiation risk and reducing the uncertainty in the biological data. Chapter 5 deals with the chemical and molecular changes underlying cellular responses and the LET dependence of these changes. Chapter 6, in turn, discusses those cellular and genetic changes which lead to mutation or neoplastic transformation. Chapters 7 and 8 examine deterministic and stochastic effects, respectively, and the data required for the prediction of such effects at different organizational levels and for the extrapolation from experimental results in animals to risks for man. Gaps and uncertainties in this data are examined relative to data required for establishing radiation protection standards for neutrons and procedures for the effective and safe use of neutron and other high-LET radiation therapy.

  3. Computational Biology Undergraduate Research and Mentoring (URM) Program

    E-print Network

    Oviedo, Néstor J.

    Computational Biology Undergraduate Research and Mentoring (URM) Program Program Description) summer training programs in mathematical and computational biology; (2) one year of independent research: Program Benefits: Program Eligibility: The goal of this National Science Foundation funded program

  4. Connecting Research to Teaching: Professional Communities: Teachers Supporting Teachers.

    ERIC Educational Resources Information Center

    Adajian, Lisa Byrd

    1996-01-01

    Reviews research on importance of strong professional communities for supporting reform. National Center for Research in Mathematical Sciences Education (NCRMSE) found significant correlation between teachers' professional community and reformed mathematics instruction. Urban Mathematics Collaboratives (UMC), Quantitative Understanding: Amplifying…

  5. Research Positions in Big Data Computational Biology Department of Computational and Systems Biology

    E-print Network

    Benos, Takis

    Research Positions in Big Data Computational Biology Department of Computational and clinical data related to melanoma and chronic lung diseases. The ideal, and will have research experience in computational biology. 2. One Data Scientist

  6. Gordon Research Conference on Mammary Gland Biology

    SciTech Connect

    Not Available

    1989-01-01

    The 1989 conference was the tenth in the series of biennial Gordon Research Conferences on Mammary Gland Biology. Traditionally this conference brings together scientists from diverse backgrounds and experience but with a common interest in the biology of the mammary gland. Investigators from agricultural and medical schools, biochemists, cell and molecular biologists, endocrinologists, immunologists, and representatives from the emerging biotechnology industries met to discuss current concepts and results on the function and regulation of the normal and neoplastic mammary gland in a variety of species. Of the participants, approximately three-fourths were engaged in studying the normal mammary gland function, whereas the other quarter were engaged in studying the neoplastic gland. The interactions between scientists, clinicians, veterinarians examining both normal and neoplastic cell function serves to foster the multi-disciplinary goals of the conference and has stimulated many cooperative projects among participants in previous years.

  7. Community College Class Devoted to Astronomical Research

    NASA Astrophysics Data System (ADS)

    Genet, R. M.; Genet, C. L.

    2002-05-01

    A class at a small community college, Central Arizona College, was dedicated to astronomical research. Although hands-on research is usually reserved for professionals or graduate students, and occasionally individual undergraduate seniors, we decided to introduce community college students to science by devoting an entire class to research. Nine students were formed into three closely cooperating teams. The class as a whole decided that all three teams would observe Cepheid stars photometrically using a robotic telescope at the Fairborn Observatory. Speaker-phone conference calls were made to Kenneth E. Kissell for help on Cepheid selection, Michael A. Seeds for instructions on the use of the Phoenix-10 robotic telescope, and Douglas S. Hall for assitance in selecting appropriate comparison and check stars. The students obtained critical references on past observations from Konkoly Observatory via airmail. They spent several long night sessions at our apartment compiling the data, making phase calculations, and creating graphs. Finally, the students wrote up their results for publication in a forthcoming special issue of the international journal on stellar photometry, the IAPPP Communication. We concluded that conducting team research is an excellent way to introduce community college students to science, that a class devoted to cooperation as opposed to competition was refreshing, and that group student conference calls with working astronomers were inspiring. A semester, however, is a rather short time to initiate and complete research projects. The students were Sally Baldwin, Cory Bushnell, Bryan Dehart, Pamela Frantz, Carl Fugate, Mike Grill, Jessica Harger, Klay Lapa, and Diane Wiseman. We are pleased to acknowledge the assistance provided by the astronomers mentioned above, James Stuckey (Campus Dean), and our Union Institute and University doctoral committee members Florence Pittman Matusky, Donald S. Hayes, and Karen S. Grove.

  8. Community-based participatory research (CBPR) with indigenous communities: producing respectful and reciprocal research.

    PubMed

    Tobias, Joshua K; Richmond, Chantelle A M; Luginaah, Isaac

    2013-04-01

    The health disparities between Indigenous and non-Indigenous peoples in Canada continue to grow despite an expanding body of research that attempts to address these inequalities, including increased attention from the field of health geography. Here, we draw upon a case study of our own community-based approach to health research with Anishinabe communities in northern Ontario as a means of advocating the growth of such participatory approaches. Using our own case as an example, we demonstrate how a collaborative approach to respectful and reciprocal research can be achieved, including some of the challenges we faced in adopting this approach. PMID:23651937

  9. Research in the Black Community: A Black Psychologist's Perspective.

    ERIC Educational Resources Information Center

    Williams, Robert L.

    Much of the research conducted within the black community served primarily to promote the interests and personal gain of the researchers rather than the community. Consequently, the research proved more harmful than helpful, thereby providing no visible or appreciable payoff or benefits to the black community. Moreover, the perspectives of the…

  10. A Retrospective of Four Decades of Community College Research

    ERIC Educational Resources Information Center

    Floyd, Deborah L.; Felsher, Rivka A.; Ramdin, Gianna

    2016-01-01

    In the 40th publication year of the "Community College Journal of Research and Practice" ("CCJRP"), the authors present a 39-year retrospective on research on the community college through the lens of the journal. It is not known exactly what the body of community college research wholly consists of. Without access to the…

  11. A community systems approach to research strategies.

    PubMed

    Richards, W

    1989-01-01

    Conflict management skills are needed when dealing with research projects, in multi-cultural settings. Alcohol projects are especially prone to conflict because of the variety of different models of causation and intervention. There are a number of theories of conflict and type of conflict management approaches. The role of people who are in "cultural broker" or interface roles between conflicting parties has been reviewed elsewhere (Spiegel, 1973). My own approach--one of a number of possible alternatives--is briefly outlined here. It involves a form of systems analysis, and a role that many researchers might not initially feel comfortable with. The role goes beyond that of the "objective scientific reporter," and even beyond that of "conflict manager" or "culture broker." I am not sure quite what to call it: there are active attempts to get community members to resolve conflicts and carry out projects, but also what I consider a research orientation to try to carefully observe and describe and measure what is done. It is, I suppose, a form of "participant-observation," but the participation involves developing an overall strategic approach to the community's perceived problems. There is careful attention to who gets defined as the "problem," and who will actually be carrying out the project. Local community factions may need assistance in developing a very clear vision of the targeted results for the project. One has to also be keenly aware of possible problems that can result from differences in world view, pressures from funding sources or other intermediary groups who may have their own agendas for the research, as well as the overall context or environmental constraints.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:2490283

  12. Biological research on Space Station Freedom

    NASA Technical Reports Server (NTRS)

    Chambers, L. P.; Stabekis, P. D.; Teeter, R. C.

    1990-01-01

    The paper discusses laboratory capabilities of the SSF which permit long-term, systematic investigations into the effects of the space environment, particularly the effect of microgravity, on a range of biological specimens. The ability to manipulate gravity levels between 0 and 2.0 g makes it possible to examine gravitational effects along a continuum. Space centrifuge research is expected to lead to practical applications in areas such as aging, treating malfunctions of the body regulatory and defense mechanisms, improving agricultural production, and extending human performance.

  13. Race in Biological and Biomedical Research

    PubMed Central

    Cooper, Richard S.

    2013-01-01

    The concept of race has had a significant influence on research in human biology since the early 19th century. But race was given its meaning and social impact in the political sphere and subsequently intervened in science as a foreign concept, not grounded in the dominant empiricism of modern biology. The uses of race in science were therefore often disruptive and controversial; at times, science had to be retrofitted to accommodate race, and science in turn was often used to explain and justify race. This relationship was unstable in large part because race was about a phenomenon that could not be observed directly, being based on claims about the structure and function of genomic DNA. Over time, this relationship has been characterized by distinct phases, evolving from the inference of genetic effects based on the observed phenotype to the measurement of base-pair variation in DNA. Despite this fundamental advance in methodology, liabilities imposed by the dual political-empirical origins of race persist. On the one hand, an optimistic prediction can be made that just as geology made it possible to overturn the myth of the recent creation of the earth and evolution told us where the living world came from, molecular genetics will end the use of race in biology. At the same time, because race is fundamentally a political and not a scientific idea, it is possible that only a political intervention will relieve us of the burden of race. PMID:24186487

  14. Race in biological and biomedical research.

    PubMed

    Cooper, Richard S

    2013-11-01

    The concept of race has had a significant influence on research in human biology since the early 19th century. But race was given its meaning and social impact in the political sphere and subsequently intervened in science as a foreign concept, not grounded in the dominant empiricism of modern biology. The uses of race in science were therefore often disruptive and controversial; at times, science had to be retrofitted to accommodate race, and science in turn was often used to explain and justify race. This relationship was unstable in large part because race was about a phenomenon that could not be observed directly, being based on claims about the structure and function of genomic DNA. Over time, this relationship has been characterized by distinct phases, evolving from the inference of genetic effects based on the observed phenotype to the measurement of base-pair variation in DNA. Despite this fundamental advance in methodology, liabilities imposed by the dual political-empirical origins of race persist. On the one hand, an optimistic prediction can be made that just as geology made it possible to overturn the myth of the recent creation of the earth and evolution told us where the living world came from, molecular genetics will end the use of race in biology. At the same time, because race is fundamentally a political and not a scientific idea, it is possible that only a political intervention will relieve us of the burden of race. PMID:24186487

  15. Division of Biological and Medical Research annual research summary, 1983

    SciTech Connect

    Barr, S.H.

    1984-08-01

    This research summary contains brief descriptions of research in the following areas: (1) mechanisms of hepatocarcinogenesis; (2) role of metals in cocarcinogenesis and the use of liposomes for metal mobilization; (3) control of mutagenesis and cell differentiation in cultured cells by tumor promoters; (4) radiation effects in mammalian cells; (5) radiation carcinogenesis and radioprotectors; (6) life shortening, tumor induction, and tissue dose for fission-neutron and gamma-ray irradiations; (7) mammalian genetics and biostatistics; (8) radiation toxicity studies; (9) hematopoiesis in chronic toxicity; (10) molecular biology studies; (11) chemical toxicology; (12) carcinogen identification and metabolism; (13) metal metabolism and toxicity; and (14) neurobehavioral chronobiology. (ACR)

  16. 2010 Plant Molecular Biology Gordon Research Conference

    SciTech Connect

    Michael Sussman

    2010-07-23

    The Plant Molecular Biology Conference has traditionally covered a breadth of exciting topics and the 2010 conference will continue in that tradition. Emerging concerns about food security have inspired a program with three main themes: (1) genomics, natural variation and breeding to understand adaptation and crop improvement, (2) hormonal cross talk, and (3) plant/microbe interactions. There are also sessions on epigenetics and proteomics/metabolomics. Thus this conference will bring together a range of disciplines, will foster the exchange of ideas and enable participants to learn of the latest developments and ideas in diverse areas of plant biology. The conference provides an excellent opportunity for individuals to discuss their research because additional speakers in each session will be selected from submitted abstracts. There will also be a poster session each day for a two-hour period prior to dinner. In particular, this conference plays a key role in enabling students and postdocs (the next generation of research leaders) to mingle with pioneers in multiple areas of plant science.

  17. Biological and Environmental Research Network Requirements

    SciTech Connect

    Balaji, V.; Boden, Tom; Cowley, Dave; Dart, Eli; Dattoria, Vince; Desai, Narayan; Egan, Rob; Foster, Ian; Goldstone, Robin; Gregurick, Susan; Houghton, John; Izaurralde, Cesar; Johnston, Bill; Joseph, Renu; Kleese-van Dam, Kerstin; Lipton, Mary; Monga, Inder; Pritchard, Matt; Rotman, Lauren; Strand, Gary; Stuart, Cory; Tatusova, Tatiana; Tierney, Brian; Thomas, Brian; Williams, Dean N.; Zurawski, Jason

    2013-09-01

    The Energy Sciences Network (ESnet) is the primary provider of network connectivity for the U.S. Department of Energy (DOE) Office of Science (SC), the single largest supporter of basic research in the physical sciences in the United States. In support of SC programs, ESnet regularly updates and refreshes its understanding of the networking requirements of the instruments, facilities, scientists, and science programs that it serves. This focus has helped ESnet be a highly successful enabler of scientific discovery for over 25 years. In November 2012, ESnet and the Office of Biological and Environmental Research (BER) of the DOE SC organized a review to characterize the networking requirements of the programs funded by the BER program office. Several key findings resulted from the review. Among them: 1) The scale of data sets available to science collaborations continues to increase exponentially. This has broad impact, both on the network and on the computational and storage systems connected to the network. 2) Many science collaborations require assistance to cope with the systems and network engineering challenges inherent in managing the rapid growth in data scale. 3) Several science domains operate distributed facilities that rely on high-performance networking for success. Key examples illustrated in this report include the Earth System Grid Federation (ESGF) and the Systems Biology Knowledgebase (KBase). This report expands on these points, and addresses others as well. The report contains a findings section as well as the text of the case studies discussed at the review.

  18. Edinburgh Research Explorer The systems biology simulation core algorithm

    E-print Network

    Millar, Andrew J.

    -core-development@lists.sourceforge.net. Keywords: Systems biology, Biological networks, Mathematical modeling, Simulation, Algorithms, OrdinaryEdinburgh Research Explorer The systems biology simulation core algorithm Citation for published, Hiroi, N, Planatscher, H, Zell, A & Dräger, A 2013, 'The systems biology simulation core algorithm' BMC

  19. The Healthy African American Families (HAAF) project: from community-based participatory research to community-partnered participatory research.

    PubMed

    Ferré, Cynthia D; Jones, Loretta; Norris, Keith C; Rowley, Diane L

    2010-01-01

    During the past two decades, there has been an increased use of community-based participatory research in public health activities, especially as part of efforts to understand health disparities affecting communities of color. This article describes the history and lessons learned of a long-standing community participatory project, Healthy African American Families (HAAF), in Los Angeles, California. HAAF evolved from a partnership formed by a community advisory board, university, and federal health agency to an independent, incorporated community organization that facilitates and brokers research and health promotion activities within its community. HAAF created mechanisms for community education and networks of community relationships and reciprocity through which mutual support, research, and interventions are integrated. These sustained, institutionalized relationships unite resources and both community and scientific expertise in a community-partnered participatory research model to address multiple health problems in the community, including preterm birth, HIV, asthma, depression, and diabetes. The HAAF participatory process builds on existing community resiliency and resources and on centuries of self-help, problem-solving, cooperative action, and community activism within the African American community. HAAF demonstrates how community-partnered participatory research can be a mechanism for directing power, collective action, system change, and social justice in the process of addressing health disparities at the community level. PMID:20629240

  20. Creating Meaningful Partnerships Between Communities and Environmental Health Researchers

    PubMed Central

    De Souza, Rachael; Aguilar, Genevieve C.; de Castro, A. B.

    2014-01-01

    Community engagement is a necessary, although challenging, element of environmental health research in communities. To facilitate the engagement process, direct action community organizing agencies can be useful in bringing together communities and researchers. This article describes the preliminary activities that one direct action community organizing agency used in partnership with researchers to improve community engagement in the first 6 months of an environmental health study conducted in a major U.S. city. Activities included developing communication strategies, creating opportunities for researcher–community interaction, and sustaining project momentum. To conduct environmental research that is both scientifically rigorous and relevant to communities, collaborating partners had to develop professional skills and strategies outside of their areas of expertise. PMID:23875568

  1. Has Modern Biology Entered the Mouth? The Clinical Impact of Biological Research.

    ERIC Educational Resources Information Center

    Baum, Bruce J.

    1991-01-01

    Three areas of biological research that are beginning to have an impact on clinical medicine are examined, including molecular biology, cell biology, and biotechnology. It is concluded that oral biologists and educators must work cooperatively to bring rapid biological and biomedical advances into dental training in a meaningful way. (MSE)

  2. Space Station Biological Research Project Habitat: Incubator

    NASA Technical Reports Server (NTRS)

    Nakamura, G. J.; Kirven-Brooks, M.; Scheller, N. M.

    2001-01-01

    Developed as part of the suite of Space Station Biological Research Project (SSBRP) hardware to support research aboard the International Space Station (ISS), the Incubator is a temperature-controlled chamber, for conducting life science research with small animal, plant and microbial specimens. The Incubator is designed for use only on the ISS and is transported to/from the ISS, unpowered and without specimens, in the Multi-Purpose Logistics Module (MPLM) of the Shuttle. The Incubator interfaces with the three SSBRP Host Systems; the Habitat Holding Racks (HHR), the Life Sciences Glovebox (LSG) and the 2.5 m Centrifuge Rotor (CR), providing investigators with the ability to conduct research in microgravity and at variable gravity levels of up to 2-g. The temperature within the Specimen Chamber can be controlled between 4 and 45 C. Cabin air is recirculated within the Specimen Chamber and can be exchanged with the ISS cabin at a rate of approximately equal 50 cc/min. The humidity of the Specimen Chamber is monitored. The Specimen Chamber has a usable volume of approximately equal 19 liters and contains two (2) connectors at 28v dc, (60W) for science equipment; 5 dedicated thermometers for science; ports to support analog and digital signals from experiment unique sensors or other equipment; an Ethernet port; and a video port. It is currently manifested for UF-3 and will be launched integrated within the first SSBRP Habitat Holding Rack.

  3. 78 FR 63170 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-10-23

    ... Biological and Environmental Research Advisory Committee AGENCY: Office of Science, Department of Energy. ACTION: Notice of open meeting. SUMMARY: This notice announces a meeting of the Biological and... Energy, Office of Science, Office of Biological and Environmental Research, SC-23/Germantown...

  4. 78 FR 34088 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-06-06

    ... Biological and Environmental Research Advisory Committee AGENCY: Office of Science, Department of Energy. ACTION: Notice of Open Meeting. SUMMARY: This notice announces a meeting of the Biological and..., Office of Science, Office of Biological and Environmental Research, SC-23/Germantown Building,...

  5. 77 FR 28368 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-05-14

    ... Biological and Environmental Research Advisory Committee AGENCY: Office of Science, Department of Energy. ACTION: Notice of Open Meeting. SUMMARY: This notice announces a meeting of the Biological and..., Office of Biological and Environmental Research, SC-23/Germantown Building, 1000 Independence Avenue...

  6. RESEARCH ARTICLE Ensuring the security of synthetic biology--towards

    E-print Network

    Sussex, University of

    RESEARCH ARTICLE Ensuring the security of synthetic biology--towards a 5P governance strategy the label ``synthetic biology'' has been attached to a number of diverse research and commercial activities companies. Based on the analysis of bio- security issues surrounding synthetic biology during the SYNBIOSAFE

  7. Community Economic Development: Perspectives on Research and Policy.

    ERIC Educational Resources Information Center

    Galaway, Burt, Ed.; Hudson, Joe, Ed.

    This book contains 27 papers that were originally developed for a research and policy symposium at which Canadian community economic development (CED) was examined in terms of research and policy requirements. The book contains the following papers: "Community Economic Development Practice in Canada" (Brodhead); "Community Economic Development: An…

  8. MTL ANNUAL RESEARCH REPORT 2015 Biological, Medical Devices and Systems 117 Biological, Medical Devices

    E-print Network

    Kastner, Marc A.

    MTL ANNUAL RESEARCH REPORT 2015 Biological, Medical Devices and Systems 117 Biological, Medical ........................................................................ 124 Piezoelectric Micro-machined Ultrasonic Transducer Array for Medical Imaging......................................................... 142 #12;118 Biological, Medical Devices and Systems MTL ANNUAL RESEARCH REPORT 2015 #12;MTL ANNUAL

  9. pClone: Synthetic Biology Tool Makes Promoter Research Accessible to Beginning Biology Students

    ERIC Educational Resources Information Center

    Campbell, A. Malcolm; Eckdahl, Todd; Cronk, Brian; Andresen, Corinne; Frederick, Paul; Huckuntod, Samantha; Shinneman, Claire; Wacker, Annie; Yuan, Jason

    2014-01-01

    The "Vision and Change" report recommended genuine research experiences for undergraduate biology students. Authentic research improves science education, increases the number of scientifically literate citizens, and encourages students to pursue research. Synthetic biology is well suited for undergraduate research and is a growing area…

  10. The Sustainable & Healthy Communities Research Program – EPA’s Research Approach to Assisting Community Decision Making

    EPA Science Inventory

    A sustainable world is one in which human needs are met equitably and without sacrificing the ability of future generations to meet their needs on environmental, economic, and social fronts. The U.S. Environmental Protection Agency’s Sustainable and Healthy Communities Research ...

  11. Relevance of ammonium oxidation within biological soil crust communities

    USGS Publications Warehouse

    Johnson, S.L.; Budinoff, C.R.; Belnap, J.; Garcia-Pichel, F.

    2005-01-01

    Thin, vertically structured topsoil communities that become ecologically important in arid regions (biological soil crusts or BSCs) are responsible for much of the nitrogen inputs into pristine arid lands. We studied N2 fixation and ammonium oxidation (AO) at subcentimetre resolution within BSCs from the Colorado Plateau. Pools of dissolved porewater nitrate/ nitrite, ammonium and organic nitrogen in wetted BSCs were high in comparison with those typical of aridosoils. They remained stable during incubations, indicating that input and output processes were of similar magnitude. Areal N2 fixation rates (6.5-48 ??mol C2H2 m-2 h -1) were high, the vertical distribution of N2 fixation peaking close to the surface if populations of heterocystous cyanobacteria were present, but in the subsurface if they were absent. Areal AO rates (19-46 ??mol N m-2 h-1) were commensurate with N2 fixation inputs. When considering oxygen availability, AO activity invariably peaked 2-3 mm deep and was limited by oxygen (not ammonium) supply. Most probable number (MPN)-enumerated ammonia-oxidizing bacteria (6.7-7.9 ?? 103 cells g-1 on average) clearly peaked at 2-3 mm depth. Thus, AO (hence nitrification) is a spatially restricted but important process in the nitrogen cycling of BSC, turning much of the biologically fixed nitrogen into oxidized forms, the fate of which remains to be determined.

  12. Molecular biology approaches in bioadhesion research

    PubMed Central

    Rodrigues, Marcelo; Lengerer, Birgit; Ostermann, Thomas

    2014-01-01

    Summary The use of molecular biology tools in the field of bioadhesion is still in its infancy. For new research groups who are considering taking a molecular approach, the techniques presented here are essential to unravelling the sequence of a gene, its expression and its biological function. Here we provide an outline for addressing adhesion-related genes in diverse organisms. We show how to gradually narrow down the number of candidate transcripts that are involved in adhesion by (1) generating a transcriptome and a differentially expressed cDNA list enriched for adhesion-related transcripts, (2) setting up a BLAST search facility, (3) perform an in situ hybridization screen, and (4) functional analyses of selected genes by using RNA interference knock-down. Furthermore, latest developments in genome-editing are presented as new tools to study gene function. By using this iterative multi-technologies approach, the identification, isolation, expression and function of adhesion-related genes can be studied in most organisms. These tools will improve our understanding of the diversity of molecules used for adhesion in different organisms and these findings will help to develop innovative bio-inspired adhesives. PMID:25161834

  13. Biological data sciences in genome research.

    PubMed

    Schatz, Michael C

    2015-10-01

    The last 20 years have been a remarkable era for biology and medicine. One of the most significant achievements has been the sequencing of the first human genomes, which has laid the foundation for profound insights into human genetics, the intricacies of regulation and development, and the forces of evolution. Incredibly, as we look into the future over the next 20 years, we see the very real potential for sequencing more than 1 billion genomes, bringing even deeper insight into human genetics as well as the genetics of millions of other species on the planet. Realizing this great potential for medicine and biology, though, will only be achieved through the integration and development of highly scalable computational and quantitative approaches that can keep pace with the rapid improvements to biotechnology. In this perspective, I aim to chart out these future technologies, anticipate the major themes of research, and call out the challenges ahead. One of the largest shifts will be in the training used to prepare the class of 2035 for their highly interdisciplinary world. PMID:26430150

  14. Biological data sciences in genome research

    PubMed Central

    Schatz, Michael C.

    2015-01-01

    The last 20 years have been a remarkable era for biology and medicine. One of the most significant achievements has been the sequencing of the first human genomes, which has laid the foundation for profound insights into human genetics, the intricacies of regulation and development, and the forces of evolution. Incredibly, as we look into the future over the next 20 years, we see the very real potential for sequencing more than 1 billion genomes, bringing even deeper insight into human genetics as well as the genetics of millions of other species on the planet. Realizing this great potential for medicine and biology, though, will only be achieved through the integration and development of highly scalable computational and quantitative approaches that can keep pace with the rapid improvements to biotechnology. In this perspective, I aim to chart out these future technologies, anticipate the major themes of research, and call out the challenges ahead. One of the largest shifts will be in the training used to prepare the class of 2035 for their highly interdisciplinary world. PMID:26430150

  15. Welcome ASCO Community Research Forum members! | accrualnet.cancer.gov

    Cancer.gov

    The American Society of Clinical Oncology sponsors a 'Community Research Forum', designed to provide community-based researchers an opportunity to unite and develop solutions to common challenges to conducting research. A hearty group of souls has been working hard over the past year to compile a great list of online resources to facilitate the conduct and management of clinical trials in the community setting. The site is designed for physician investigators and research staff.

  16. Learning through Participatory Action Research for Community Ecotourism Planning.

    ERIC Educational Resources Information Center

    Guevara, Jose Roberto Q.

    1996-01-01

    Ecologically sound tourism planning and policy require an empowering community participation. The participatory action research model helps a community gain understanding of its social reality, learn how to learn, initiate dialog, and discover new possibilities for addressing its situation. (SK)

  17. Space plant biology research in Lithuania.

    PubMed

    Ri?kien?, Aurika

    2012-09-01

    In 1957, the Soviet Union launched the first artificial Earth satellite, initiating its space exploration programs. Throughout the rest of the twentieth century, the development of these space programs received special attention from Soviet Union authorities. Scientists from the former Soviet Republics, including Lithuania, participated in these programs. From 1971 to 1990, Lithuanians designed more than 20 experiments on higher plant species during space flight. Some of these experiments had never before been attempted and, therefore, made scientific history. However, the formation and development of space plant biology research in Lithuania or its origins, context of formation, and placement in a worldwide context have not been explored from a historical standpoint. By investigating these topics, this paper seeks to construct an image of the development of a very specific field of science in a small former Soviet republic. PMID:22613222

  18. The role of community health advisors in community-based participatory research.

    PubMed

    Story, Lachel; Hinton, Agnes; Wyatt, Sharon B

    2010-01-01

    Mistrust and fear of research often exist in minority communities because of assumptions, preconceived ideas, and historical abuse and racism that continue to influence research participation. The research establishment is full of well-meaning 'outsider' investigators who recognize discrimination, health disparities, and insufficient health care providers in minority communities, but struggle in breaking through this history of mistrust. This article provides ethical insights from one such 'insider-outsider', community-based participatory research project implemented via community health advisors in the Mississippi Delta. Both community-based participatory research and community health advisors provide opportunities to address the ethical issues of trust, non-maleficence, and justice in minority communities. Implications for ethics-driven nursing research are discussed. PMID:20089631

  19. Plant biology research and training for the 21st century

    SciTech Connect

    Kelly, K.

    1992-01-01

    The committee was assembled in response to a request from the National Science Foundation (NSF), the US Department of Agriculture (USDA), and the US Department of Energy (DoE). The leadership of these agencies asked the National Academy of Sciences through the National Research Council (NRC) to assess the status of plant-science research in the United States in light of the opportunities arising from advances inother areas of biology. NRC was asked to suggest ways of accelerating the application of these new biologic concepts and tools to research in plant science with the aim of enhancing the acquisition of new knowledge about plants. The charge to the committee was to examine the following: Organizations, departments, and institutions conducting plant biology research; human resources involved in plant biology research; graduate training programs in plant biology; federal, state, and private sources of support for plant-biology research; the role of industry in conducting and supporting plant-biology research; the international status of US plant-biology research; and the relationship of plant biology to leading-edge research in biology.

  20. Plant biology research and training for the 21st century

    SciTech Connect

    Kelly, K.

    1992-12-31

    The committee was assembled in response to a request from the National Science Foundation (NSF), the US Department of Agriculture (USDA), and the US Department of Energy (DoE). The leadership of these agencies asked the National Academy of Sciences through the National Research Council (NRC) to assess the status of plant-science research in the United States in light of the opportunities arising from advances inother areas of biology. NRC was asked to suggest ways of accelerating the application of these new biologic concepts and tools to research in plant science with the aim of enhancing the acquisition of new knowledge about plants. The charge to the committee was to examine the following: Organizations, departments, and institutions conducting plant biology research; human resources involved in plant biology research; graduate training programs in plant biology; federal, state, and private sources of support for plant-biology research; the role of industry in conducting and supporting plant-biology research; the international status of US plant-biology research; and the relationship of plant biology to leading-edge research in biology.

  1. A Framework for Building Research Partnerships with First Nations Communities

    PubMed Central

    Bharadwaj, Lalita

    2014-01-01

    Solutions to complex health and environmental issues experienced by First Nations communities in Canada require the adoption of collaborative modes of research. The traditional “helicopter” approach to research applied in communities has led to disenchantment on the part of First Nations people and has impeded their willingness to participate in research. University researchers have tended to develop projects without community input and to adopt short term approaches to the entire process, perhaps a reflection of granting and publication cycles and other realities of academia. Researchers often enter communities, collect data without respect for local culture, and then exit, having had little or no community interaction or consideration of how results generated could benefit communities or lead to sustainable solutions. Community-based participatory research (CBPR) has emerged as an alternative to the helicopter approach and is promoted here as a method to research that will meet the objectives of both First Nations and research communities. CBPR is a collaborative approach that equitably involves all partners in the research process. Although the benefits of CBPR have been recognized by segments of the University research community, there exists a need for comprehensive changes in approaches to First Nations centered research, and additional guidance to researchers on how to establish respectful and productive partnerships with First Nations communities beyond a single funded research project. This article provides a brief overview of ethical guidelines developed for researchers planning studies involving Aboriginal people as well as the historical context and principles of CBPR. A framework for building research partnerships with First Nations communities that incorporates and builds upon the guidelines and principles of CBPR is then presented. The framework was based on 10 years’ experience working with First Nations communities in Saskatchewan. The framework for research partnership is composed of five phases. They are categorized as the pre-research, community consultation, community entry, research and research dissemination phases. These phases are cyclical, non-linear and interconnected. Elements of, and opportunities for, exploration, discussion, engagement, consultation, relationship building, partnership development, community involvement, and information sharing are key components of the five phases within the framework. The phases and elements within this proposed framework have been utilized to build and implement sustainable collaborative environmental health research projects with Saskatchewan First Nations communities. PMID:24855374

  2. Evaluation of a Lay Health Adviser Training for a Community-Based Participatory Research Project in a Native American Community

    ERIC Educational Resources Information Center

    Watts, Vanessa M.; Christopher, Suzanne; Streitz, Jana L.; McCormick, Alma Knows His Gun

    2005-01-01

    Community-based participatory research directly involves community members and community-based service providers as partners in the research process. It is especially important in Native American communities, where egregious research practices have led some communities and individuals to be wary of researchers. Messengers for Health uses a lay…

  3. Participatory development and implementation of a community research workshop: Experiences from a community based participatory research (CBPR) partnership

    Technology Transfer Automated Retrieval System (TEKTRAN)

    While community based participatory research (CBPR) principles stress the importance of "equitable partnerships" and an "empowering and power-sharing process that attends to social inequalities", descriptions of actual projects often cite the challenges confronted in academic–-community partnerships...

  4. Sharing Control: Developing Research Literacy through Community-Based Action Research

    ERIC Educational Resources Information Center

    Juergensmeyer, Erik

    2011-01-01

    This article suggests that the methodology of community-based action research provides concrete strategies for fostering effective community problem solving. To argue for a community research pedagogy, the author draws upon past and present scholarship in action research and participatory action research, experiences teaching an undergraduate…

  5. 77 FR 55200 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-09-07

    ... Biological and Environmental Research Advisory Committee AGENCY: Office of Science, Department of Energy... Environmental Research Advisory Committee (BERAC). The Federal Advisory Committee Act (Pub. L. 92-463, 86 Stat... of Science, Office of Biological and Environmental Research, SC-23/Germantown Building,...

  6. 77 FR 4028 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-01-26

    ... Biological and Environmental Research Advisory Committee AGENCY: Department of Energy; Office of Science... Environmental Research Advisory Committee (BERAC). The Federal Advisory Committee Act (Pub. L. 92-463, 86 Stat... of Biological and Environmental Research, SC-23/Germantown Building, 1000 Independence Avenue...

  7. 75 FR 53685 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-01

    ... Biological and Environmental Research Advisory Committee AGENCY: Department of Energy, Office of Science... Environmental Research Advisory Committee (BERAC). The Federal Advisory Committee Act (Pub. L. 92-463, 86 Stat... of Biological and Environmental Research, SC-23/Germantown Building, 1000 Independence Avenue,...

  8. 76 FR 57028 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-15

    ... Biological and Environmental Research Advisory Committee AGENCY: Department of Energy; Office of Science... Environmental Research Advisory Committee (BERAC). The Federal Advisory Committee Act (Pub. L. 92-463, 86 Stat....S. Department of Energy, Office of Science, Office of Biological and Environmental Research,...

  9. [Progress in research on the biological reason of male homosexuality].

    PubMed

    Yu, Wei; Feng, Tie-jian

    2012-04-01

    Male homosexuality is a complex phenomenon which is universal and with unknown causes. Researchers believe that both biological and environmental factors have played a role in its pathogenesis. Researches focusing on genetics, neurobiology, development and endocrinology have made certain progress. In this paper, we have reviewed the biological causes of male homosexuality, which may provide clues for further research in this field. PMID:22487827

  10. Approaches to Community Nursing Research Partnerships: A Case Example

    PubMed Central

    Anderson, Nancy Lois Ruth; Lesser, Janna; Oscós-Sánchez, Manuel ángel; Piñeda, Daniel V.; Garcia, Gwyn; Mancha, Juan

    2015-01-01

    Every community is unique and has special strengths and health-related needs, such that a community-based participatory research partnership cannot be formed and implemented in a predetermined, step-by-step manner. In this article, we describe how the Community Partnership Model (CPM), designed to allow flexible movement back and forth through all action phases, can be adapted to a variety of communities. Originally developed for nursing practice, the CPM has evolved into approaches for the collaborative initiation and maintenance of community partnerships. The model is informed by the recognition that cultural, social, economic, and knowledge backgrounds may vary greatly between nurse researchers and their community partners. The Familias En Acción violence prevention project exemplifies the use of the CPM in a transcultural partnership formation and implementation process. The collaborative approaches of the model guide community and research partners to interconnect and move flexibly through all partnership phases, thereby facilitating sustainability and community self-advocacy. PMID:24391121

  11. Comparative metagenomics reveals microbial community differentiation in a biological heap leaching system.

    PubMed

    Hu, Qi; Guo, Xue; Liang, Yili; Hao, Xiaodong; Ma, Liyuan; Yin, Huaqun; Liu, Xueduan

    2015-01-01

    The microbial community in a biological heap leaching (BHL) system is crucial for the decomposition of ores. However, the microbial community structure and functional differentiation in different parts of a biological heap leaching system are still unknown. In this study, metagenomic sequencing was used to fully illuminate the microbial community differentiation in the pregnant leach solution (PLS) and leaching heap (LH) of a BHL system. Long-read sequences (1.3 million) were obtained for the two samples, and the MG_RAST server was used to perform further analysis. The taxa analysis results indicated that the dominant genera of PLS is autotrophic bacterium Acidithiobacillus, but heterotrophic bacterium Acidiphilium is predominant in LH. Furthermore, functional annotation and hierarchical comparison with different reference samples showed that the abundant presence of genes was involved in transposition, DNA repair and heavy metal transport. The sequences related to transposase, which is important for the survival of the organism in the hostile environment, were both mainly classified into Acidiphilium for PLS and LH. These results indicated that not only autotrophic bacteria such as Acidithiobacillus, but also heterotrophic bacteria such as Acidiphilium, were essential participants in the bioleaching process. This new meta-view research will further facilitate the effective application of bioleaching. PMID:26117598

  12. Community Resources for Enabling Research in Distributed Scientific Workflows

    E-print Network

    Deelman, Ewa

    1 Community Resources for Enabling Research in Distributed Scientific Workflows Rafael Ferreira da, scientific workflows have been used extensively by the scientific research community to exploit coarse--A significant amount of recent research in scientific workflows aims to develop new techniques, algorithms

  13. Enacting Decolonized Methodologies: The "Doing" of Research in Educational Communities

    ERIC Educational Resources Information Center

    Beeman-Cadwallader, Nicole; Quigley, Cassie; Yazzie-Mintz, Tarajean

    2012-01-01

    Indigenous scholars have debated the impact that researchers and the act of researching have on Native and Indigenous people and communities. Although literature on this subject has grown, little has been written explicitly laying out "the doing" of research with these communities. The authors seek to articulate their "doing" by drawing upon the…

  14. Community-oriented support and research structures

    NASA Astrophysics Data System (ADS)

    Attig, Norbert; Eickermann, Thomas; Gibbon, Paul; Lippert, Thomas

    2009-07-01

    Coordinated by the Partnership for Advanced Computing in Europe (PRACE) Europe is restructuring and strengthening its high-performance computing infrastructure with the aim to create a model HPC ecosystem. At the tip of the pyramid, up to six centres are envisaged that will operate systems of the highest performance class. The HPC Research Infrastructure (HPC-RI) will comprise European, national and regional centres. Science communities are integral partners, strong links will include Grid and Cloud users. The HPC-RI strives at providing scientists all over Europe, on the one hand, with unlimited and independent access to state-of-the-art computer resources in all performance classes and, on the other hand, with a world-class pan-European competence and support network. While the hardware-oriented buildup of the infrastructure is making progress, high-quality user support and software development in the upcoming era of unprecedented parallelism and exascale on the horizon have become the imminent challenges. This has been clearly recognized by the European Commission, who will issue calls for proposals to fund petascale software development in summer 2009. Although traditional support structures are well established in Europe's major supercomputing centres, it is questionable if these structures are able to meet the challenges of the future: in general, support structures are based on cross-disciplinary computer science and mathematics teams; disciplinary computational science support usually is given in an ad-hoc, project-oriented manner. In this paper, we describe our approach to establish a suitable support structure-Simulation Laboratories (SL). SLs are currently being established at the Jülich Supercomputing Centre of the Forschungszentrum Jülich (FZJ) and at the Steinbuch Centre for Computing (SCC) of the Karlsruhe Institute for Technology (KIT) in Germany. While SLs are community-oriented, i.e. each SL focusses on a specific community, they are structured in a strictly interdisciplinary manner, comprising mathematicians, computer scientists and technicians along with disciplinary scientists. SLs are led by a disciplinary scientist, and representatives of the respective disciplines give guidance to its operation. This concept is proposed as a model for and might become an integral element of a future pan-European HPC support and software research structure.

  15. Participatory research strategies in nuclear risk management for native communities.

    PubMed

    Quigley, D; Handy, D; Goble, R; Sanchez, V; George, P

    2000-01-01

    The Nuclear Risk Management for Native Communities (NRMNC) project is a collaborative academic, community-based, tribal project, which conducts the three essential elements of participatory research: research, education, and community action, named here as "community-based hazards management." This article describes the goals and outcomes of this effort in assisting Native American communities in Nevada, Utah, and Southern California affected by nuclear fallout from U.S. weapons testing in the 1950s and 1960s. The NRMNC project sought to create new models for dealing with health research and risk communication needs in an environmental justice setting. The following results of this four-year project are discussed: (1) building a community-based environmental health infrastructure, (2) building community capacities through workshops and educational materials, (3) conducting both technical and community research, and (4) facilitating community-based hazards management planning. We describe such positive outcomes as the improvements in the scientific database through participatory research activities, the development of equitable relationships between scientists and community members, and the creation of a sustaining program intervention for long-term community needs. The project's outcomes are presented as an expansion to limited scientific risk management outcomes in the environmental health field that often are solely quantitative and lack relevance to community concerns about environmental health impacts from contamination. PMID:11191016

  16. How to integrate biological research into society and exclude errors in biomedical publications? Progress in theoretical and systems biology releases pressure on experimental research

    PubMed Central

    Volkov, Vadim

    2014-01-01

    This brief opinion proposes measures to increase efficiency and exclude errors in biomedical research under the existing dynamic situation. Rapid changes in biology began with the description of the three dimensional structure of DNA 60 years ago; today biology has progressed by interacting with computer science and nanoscience together with the introduction of robotic stations for the acquisition of large-scale arrays of data. These changes have had an increasing influence on the entire research and scientific community. Future advance demands short-term measures to ensure error-proof and efficient development. They can include the fast publishing of negative results, publishing detailed methodical papers and excluding a strict connection between career progression and publication activity, especially for younger researchers. Further development of theoretical and systems biology together with the use of multiple experimental methods for biological experiments could also be helpful in the context of years and decades. With regards to the links between science and society, it is reasonable to compare both these systems, to find and describe specific features for biology and to integrate it into the existing stream of social life and financial fluxes. It will increase the level of scientific research and have mutual positive effects for both biology and society. Several examples are given for further discussion. PMID:24748913

  17. International Barcode of Life: Evolution of a global research community.

    PubMed

    Adamowicz, Sarah J

    2015-05-01

    The 6th International Barcode of Life Conference (Guelph, Canada, 18-21 August 2015), themed Barcodes to Biomes, showcases the latest developments in DNA barcoding research and its diverse applications. The meeting also provides a venue for a global research community to share ideas and to initiate collaborations. All plenary and contributed abstracts are being published as an open-access special issue of Genome. Here, I use a comparison with the 3rd Conference (Mexico City, 2009) to highlight 10 recent and emerging trends that are apparent among the contributed abstracts. One of the outstanding trends is the rising proportion of abstracts that focus upon multiple socio-economically important applications of DNA barcoding, including studies of agricultural pests, quarantine and invasive species, wildlife forensics, disease vectors, biomonitoring of ecosystem health, and marketplace surveys evaluating the authenticity of seafood products and medicinal plants. Other key movements include the use of barcoding and metabarcoding approaches for dietary analyses-and for studies of food webs spanning three or more trophic levels-as well as the spread of next-generation sequencing methods in multiple contexts. In combination with the rising taxonomic and geographic scope of many barcoding iniatives, these developments suggest that several important questions in biology are becoming tractable. "What is this specimen on an agricultural shipment?", "Who eats whom in this whole food web?", and even "How many species are there?" are questions that may be answered in time periods ranging from a few years to one or a few decades. The next phases of DNA barcoding may expand yet further into prediction of community shifts with climate change and improved management of biological resources. PMID:26444714

  18. 76 FR 8357 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-02-14

    ... Biological and Environmental Research Advisory Committee AGENCY: Department of Energy; Office of Science. ACTION: Notice of open meeting. ] SUMMARY: This notice announces a meeting of the Biological and... Thomassen, Designated Federal Officer, U.S. Department of Energy, Office of Biological and...

  19. Research internship Petri net unfolding of biological networks

    E-print Network

    Doyen, Laurent

    Research internship Petri net unfolding of biological networks Topic: Logic and Verification://loicpauleve.name General presentation Biological networks, such as gene regulatory networks or signalling networks, can, and ultimately proposing mutations to control the biological cells, we are interested in computing several

  20. Engaging community college students in physics research

    NASA Astrophysics Data System (ADS)

    Valentine, Megan; Napoli, Maria; Lubin, Arica; Kramer, Liu-Yen; Aguirre, Ofelia; Kuhn, Jens-Uwe; Arnold, Nicholas

    2013-03-01

    Recruiting talent and fostering innovation in STEM (Science, Technology, Engineering and Mathematics) disciplines demands that we attract, educate, and retain a larger and more diverse cohort of students. In this regard, Community Colleges (CC), serving a disproportionate number of underrepresented minority, female and nontraditional students, represent a pool of potential talent that, due to a misguided perception of its students as being less capable, often remains untapped. We will present our strategies to attract and support the academic advancement of CC students in the STEM fields through our NSF-sponsored Research Experience for Undergraduates program entitled Internships in Nanosystems Science Engineering and Technology (INSET). For more than a decade, INSET has offered a physics research projects to CC students. The key components of INSET success are: 1) the involvement of CC faculty with a strong interest in promoting student success in all aspects of program planning and execution; 2) the design of activities that provide the level of support that students might need because of lack of confidence and/or unfamiliarity with a university environment; and 3) setting clear goals and high performance expectations.

  1. New Directions for Learning Community Assessment and Research

    ERIC Educational Resources Information Center

    Huerta, Juan Carlos

    2008-01-01

    At the 12th Annual National Learning Communities Conference in November 2007, Juan Carlos Huerta, Gale Stuart, Lauren Chism, and Michele Hansen participated in a panel discussion about new directions in learning communities assessment and research. The intent of the panel discussion was to hear from those involved in learning community assessment,…

  2. RESEARCH ARTICLE Do phages impact microbial dynamics, prokaryotic community

    E-print Network

    Jacquet, Stéphan

    RESEARCH ARTICLE Do phages impact microbial dynamics, prokaryotic community structure and nutrient of the prokaryotic community composition (both for Eubacteria and Archaea), and (iii) the recycling of nutrients and diversity of prokaryotes in various ways. They can affect the community composition of prokaryotes

  3. Research Ethics Education for Community-Engaged Research: A Review and Research Agenda

    PubMed Central

    Anderson, Emily E.; Solomon, Stephanie; Heitman, Elizabeth; DuBois, James M.; Fisher, Celia B.; Kost, Rhonda G.; Lawless, Mary Ellen; Ramsey, Cornelia; Jones, Bonnie; Ammerman, Alice; Ross, Lainie Friedman

    2012-01-01

    Community engagement is increasingly becoming an integral part of research. “Community-engaged research” (CEnR) introduces new stakeholders as well as unique challenges to the protection of participants and the integrity of the research process. We—a group of representatives of CTSA-funded institutions and others who share expertise in research ethics and CEnR—have identified gaps in the literature regarding (1) ethical issues unique to CEnR; (2) the particular instructional needs of academic investigators, community research partners, and IRB members; and (3) best practices for teaching research ethics. This paper presents what we know, as well as what we still need to learn, in order to develop quality research ethics educational materials tailored to the full range of stakeholder groups in CEnR. PMID:22565579

  4. Practicing biology: Undergraduate laboratory research, persistence in science, and the impact of self-efficacy beliefs

    NASA Astrophysics Data System (ADS)

    Berkes, Elizabeth

    As undergraduate laboratory research internships become more popular and universities devote considerable resources towards promoting them, it is important to clarify what students specifically gain through involvement in these experiences and it is important to understand their impact on the science pipeline. By examining recent findings describing the primary benefits of undergraduate research participation, along with self-efficacy theory, this study aims to provide more explanatory power to the anecdotal and descriptive accounts regarding the relationship between undergraduate research experiences and interest in continuing in science. Furthermore, this study characterizes practices that foster students' confidence in doing scientific work with detailed description and analysis of the interactions of researchers in a laboratory. Phase 1 of the study, a survey of undergraduate biology majors (n=71) at a major research university, investigates the relationships among participation in biology laboratory research internships, biology laboratory self-efficacy strength, and interest in persisting in science. Phase 2 of the study, a two-year investigation of a university biology research laboratory, investigates how scientific communities of practice develop self-efficacy beliefs. The findings suggest that participation in lab internships results in increased interest in continuing in life science/biology graduate school and careers. They also suggest that a significant proportion of that interest is related to the students' biology laboratory self-efficacy. The findings of this study point to two primary ways that undergraduate research participation might work to raise self-efficacy strength. First, university research laboratory communities can provide students with a variety of resources that scaffold them into biology laboratory mastery experiences. Second, university research laboratory communities can provide students with coping and mastery Discourse models and mentors, offering them access to and practice with the social norms of an epistemic community. This study begins to integrate what is currently known regarding student motivation through research experience, traditionally studied by program evaluations, with social learning theories. Given the role strong self-efficacy beliefs play in motivating students, understanding the kinds of social interactions that develop science self-efficacy could provide important policy guidelines for primary investigators who work with undergraduates, department chairs, and other promoters of undergraduate research in colleges and universities.

  5. Synthetic biology: An emerging research field in China

    PubMed Central

    Pei, Lei; Schmidt, Markus; Wei, Wei

    2011-01-01

    Synthetic biology is considered as an emerging research field that will bring new opportunities to biotechnology. There is an expectation that synthetic biology will not only enhance knowledge in basic science, but will also have great potential for practical applications. Synthetic biology is still in an early developmental stage in China. We provide here a review of current Chinese research activities in synthetic biology and its different subfields, such as research on genetic circuits, minimal genomes, chemical synthetic biology, protocells and DNA synthesis, using literature reviews and personal communications with Chinese researchers. To meet the increasing demand for a sustainable development, research on genetic circuits to harness biomass is the most pursed research within Chinese researchers. The environmental concerns are driven force of research on the genetic circuits for bioremediation. The research on minimal genomes is carried on identifying the smallest number of genomes needed for engineering minimal cell factories and research on chemical synthetic biology is focused on artificial proteins and expanded genetic code. The research on protocells is more in combination with the research on molecular-scale motors. The research on DNA synthesis and its commercialisation are also reviewed. As for the perspective on potential future Chinese R&D activities, it will be discussed based on the research capacity and governmental policy. PMID:21729747

  6. 78 FR 53466 - Announcement of Funding Awards for Transformation Initiative: Sustainable Communities Research...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-08-29

    ...HOUSING AND URBAN DEVELOPMENT [Docket No...Transformation Initiative: Sustainable Communities Research...Office of Policy Development and Research...administered the FY13 Sustainable Communities Research...Transformation Initiative: Sustainable Communities Research...Office of Policy Development and Research...

  7. Airways Biology Initiative Summer Research Program ABI Summer Research Program Phone: (215) 573-9874

    E-print Network

    Bushman, Frederic

    Airways Biology Initiative Summer Research Program ABI Summer Research Program Phone: (215) 573, do you have working papers? Yes No #12;Airways Biology Initiative Summer Research Program ABI Summer THE REQUIRED INTERNSHIP ACTIVITIES DURING THE PROGRAM PERIOD IF YOU ARE SELECTED AS AN AIRWAYS BIOLOGY

  8. 76 FR 78908 - Biological and Environmental Research Advisory Committee

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-20

    ... Biological and Environmental Research Advisory Committee AGENCY: Office of Science, Department of Energy. ACTION: Notice of renewal of the Biological and Environmental Research Advisory Committee. SUMMARY... with Title 41, Code of Federal Regulations, Section 102-3.65(a), and following consultation with...

  9. Flow cytometry aids basic cell biology research and drug discovery

    E-print Network

    - 1 - Flow cytometry aids basic cell biology research and drug discovery April 3, 2012 Examining of cellular protein expression, immunophenotyping, quantifying cellular DNA, and measurement of a variety of cellular phenotypes for the purposes of basic cell biology research and drug discovery. LANL's most recent

  10. The Importance of Interdisciplinary Research Training and Community Dissemination.

    PubMed

    Gill, Simone V; Vessali, Misha; Pratt, Jacob A; Watts, Samantha; Pratt, Janey S; Raghavan, Preeti; DeSilva, Jeremy M

    2015-10-01

    Funding agencies and institutions are creating initiatives to encourage interdisciplinary research that can be more easily translated into community initiatives to enhance health. Therefore, the current research environment calls for interdisciplinary education and skills to create sustained partnerships with community institutions. However, formalized opportunities in both of these areas are limited for students embarking on research careers. The purpose of this paper is to underscore the historical and current importance of providing interdisciplinary training and community dissemination for research students. We also suggest an approach to begin to address the existing gap. Specifically, we suggest embedding a 10-week summer rotation into existing research curricula with the goals of: (1) providing students with a hands-on interdisciplinary research experience, (2) facilitating dialogue between research students and community settings to disseminate science to the public, and (3) sparking collaborations among researchers who seek to create a way to sustain summer program rotations with grant funding. PMID:26508528

  11. SUNCAT: The serials union catalogue for the UK research community 

    E-print Network

    Mulligan, Zena

    SUNCAT is the national Serials Union CATalogue for the UK research community and is available at http://www.suncat.ac.uk SUNCAT is a freely available tool to help both researchers and librarians locate serials held in ...

  12. Ethical and Professional Norms in Community-Based Research

    ERIC Educational Resources Information Center

    Campano, Gerald; Ghiso, María Paula; Welch, Bethany J.

    2015-01-01

    In this article Gerald Campano, María Paula Ghiso, and Bethany J. Welch explore the role of ethical and professional norms in community-based research, especially in fostering trust within contexts of cultural diversity, systemic inequity, and power asymmetry. The authors present and describe a set of guidelines for community-based research that…

  13. NCI Community Oncology Research Program Approved | Division of Cancer Prevention

    Cancer.gov

    On June 24, 2013, the National Cancer Institute (NCI) Board of Scientific Advisors approved the creation of the NCI Community Oncology Research Program (NCORP). NCORP will bring state-of-the art cancer prevention, control, treatment and imaging clinical trials, cancer care delivery research, and disparities studies to individuals in their own communities.

  14. Theoretical Trajectories within Communities of Practice in Higher Education Research

    ERIC Educational Resources Information Center

    Tummons, Jonathan

    2012-01-01

    In this article, the role of theory in higher education research is problematised using a communities of practice framework. Drawing on a case study derived from the author's own published work and doctoral study, the article concludes that the differential uses of theory within communities of research practice can be fruitfully explored, in part,…

  15. Ethics and Community-Based Participatory Research: Commentary on Minkler

    ERIC Educational Resources Information Center

    Green, Lawrence W.

    2004-01-01

    The author comments on Meredith Minkler's article, "Ethical Challenges for the "Outside" Researcher in Community-Based Participatory Research," Health Education & Behavior 31(6):684-697, 2004 [see EJ824234]. Specifically, this commentary notes along with Minkler that, in relation to the relatively uncharted territory of Community-Based…

  16. Community Music Knowledge Exchange Research in Scottish Higher Education

    ERIC Educational Resources Information Center

    Moran, Nikki; Loening, Gica

    2011-01-01

    This article examines the usefulness of Knowledge Exchange (KE) funding streams for higher education community music research projects, with a case study of one particular project that took place between February and April 2010. The project was funded via a KE stream, linking University researchers with a well-established community music charity…

  17. Community-Driven Research Agenda to Reduce Health Disparities.

    PubMed

    McElfish, Pearl A; Kohler, Peter; Smith, Chris; Warmack, Scott; Buron, Bill; Hudson, Jonell; Bridges, Melissa; Purvis, Rachel; Rubon-Chutaro, Jellesen

    2015-12-01

    This paper describes how a new regional campus of an academic health center engaged in a community-based participatory research (CBPR) process to set a community-driven research agenda to address health disparities. The campus is situated among growing Marshallese and Hispanic populations that face significant health disparities. In 2013, with support from the Translational Research Institute, the University of Arkansas for Medical Sciences Northwest began building its research capacity in the region with the goal of developing a community-driven research agenda for the campus. While many researchers engage in some form of community-engaged research, using a CBPR process to set the research agenda for an entire campus is unique. Utilizing multiple levels of engagement, three research areas were chosen by the community: (1) chronic disease management and prevention; (2) obesity and physical activity; and (3) access to culturally appropriate healthcare. In only 18 months, the CBPR collaboration had dramatic results. Ten grants and five scholarly articles were collaboratively written and 25 community publications and presentations were disseminated. Nine research projects and health programs were initiated. In addition, many interprofessional educational and service learning objectives were aligned with the community-driven agenda resulting in practical action to address the needs identified. PMID:26573096

  18. A Case Study in Chamorro Community and Academic Engagement for a Community-Partnered Research Approach

    PubMed Central

    Tisnado, Diana M.; Sablan-Santos, Lola; Guevara, Linda; Quitugua, Lourdes; Castro, Keith; Aromin, Jay; Quenga, Joey; Tran, Jacqueline

    2015-01-01

    Objective We describe the development of a community and academic research partnership, share reflections on processes for collaborations, and identify key factors for establishing strong and effective relationships to foster high-quality research. Background A community-based participatory research (CBPR) effort evaluating a community-based patient navigation program assisting Chamorro women to access breast cancer services in Southern California served as the foundation for the development of the community-academic partnership. Methods Using a CBPR approach focusing on active involvement of community members, organizational representatives, and academic researchers in all aspects of research process, faculty from a research university and a local community-based organization were brought together to build a partnership. Community and academic partners engaged in a series of meetings where dialogue focused on developing and nurturing trust and shared values, respect for community knowledge, and establishing community-defined and prioritized needs and goals. Partners have also focused on defining and developing explicit structures and policies to implement an equal partnership. Results Experiences and lessons learned are shared, reflecting the processes of relationship building, and planning and implementing preliminary research steps. Lessons Learned Adequate time for relationship-building, open and honest communication, flexibility, and ongoing examination of assumptions are keys to developing successful CBPR partnerships.

  19. Indigenous Ways of Knowing: Implications for Participatory Research and Community

    PubMed Central

    Cochran, Patricia A. L.; Marshall, Catherine A.; Garcia-Downing, Carmen; Kendall, Elizabeth; Cook, Doris; McCubbin, Laurie; Gover, Reva Mariah S.

    2008-01-01

    Researchers have a responsibility to cause no harm, but research has been a source of distress for indigenous people because of inappropriate methods and practices. The way researchers acquire knowledge in indigenous communities may be as critical for eliminating health disparities as the actual knowledge that is gained about a particular health problem. Researchers working with indigenous communities must continue to resolve conflict between the values of the academic setting and those of the community. It is important to consider the ways of knowing that exist in indigenous communities when developing research methods. Challenges to research partnerships include how to distribute the benefits of the research findings when academic or external needs contrast with the need to protect indigenous knowledge. PMID:18048800

  20. Capacity building for health through community-based participatory nutrition intervention Research in rural communities

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Building community capacity for health promotion in small rural communities is essential if health promotion research is to yield sustainable outcomes. Since its inception, capacity-building has been a stated goal of the Delta Nutrition Intervention Research Initiative, a tri-state collaboration in ...

  1. Capacity building for health through community based participatory nutrition intervention research in rural communities

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Building community capacity for health promotion in small rural communities is essential if health promotion research is to yield sustainable outcomes. Since its inception, capacity-building has been a stated goal of the Delta Nutrition Intervention Research initiative, a tri-state collaboration in ...

  2. Community Assessment in Teaching the Research Process

    ERIC Educational Resources Information Center

    Craddock, IdaMae

    2013-01-01

    Community assessment is the concept of using wider professional communities to provide authentic assessment to students. It means using the knowledge available in one's immediate surroundings and through Web 2.0 tools to enrich instructional processes. It means using retirees, experts, and volunteers from professional organizations and…

  3. Community Researchers Conducting Health Disparities Research: Ethical and other insights from fieldwork journaling

    PubMed Central

    Mosavel, Maghboeba; Ahmed, Rashid; Daniels, Doria; Simon, Christian

    2011-01-01

    Lay persons who are trained to conduct research in their own communities form an essential part of many research projects. However, the effects of conducting research in their own communities have not been adequately explored. This paper examines the experiences, perceptions, and challenges faced by a group of community researchers during their involvement in a research project that examined if, and how, the relationships between mothers and their adolescent daughters could be harnessed to develop a daughter-initiated cervical cancer intervention. Seven community researchers interviewed 157 mother-daughter pairs in Cape Town, South Africa. We examine the use of journaling as a tool to document the experiences of community researchers, and we consider how journaling may help the community-based researcher grapple with the research process, and, more broadly, what such journal content illustrates with respect to the nature and challenges of community-engaged health research. An analysis of the content of the journals provides a strong indication of how personal and intimate the research process can be for community researchers by virtue of the background that they bring into the process as well as the additional weight of the research process itself. The complexities of navigating dual and somewhat oppositional roles – the role of impartial scientist or researcher and the role of invested community person - has been both underestimated and insufficiently researched. PMID:21680071

  4. Structural biology research at the National Synchroton Light Source

    SciTech Connect

    1996-05-01

    The world`s foremost facility for scientific research using x-rays and ultraviolet and infrared radiation is operated by the national synchrotron Light Source Department. This year alone, a total of 2200 guest researchers performed experiments at the world`s largest source of synchrotron light. Researchers are trying to define the three- dimensional structures of biological macromolecules to create a map of life, a guide for exploring the biological and chemical interactions of the vast variety of molecules found in living organisms. Studies in structural biology may lead to new insights into how biological systems are formed and nourished, how they survive and grow, how they are damaged and die. This document discusses some the the structural biological research done at the National Synchrotron Light Source.

  5. Lysimeter Research Group - A scientific community network for lysimeter research

    NASA Astrophysics Data System (ADS)

    Cepuder, Peter; Nolz, Reinhard; Bohner, Andreas; Baumgarten, Andreas; Klammler, Gernot; Murer, Erwin; Wimmer, Bernhard

    2014-05-01

    A lysimeter is a vessel that isolates a volume of soil between ground surface and a certain depth, and includes a sampling device for percolating water at its bottom. Lysimeters are traditionally used to study water and solute transport in the soil. Equipped with a weighing system, soil water sensors and temperature sensors, lysimeters are valuable instruments to investigate hydrological processes in the system soil-plant-atmosphere, especially fluxes across its boundary layers, e.g. infiltration, evapotranspiration and deep drainage. Modern lysimeter facilities measure water balance components with high precision and high temporal resolution. Hence, lysimeters are used in various research disciplines - such as hydrology, hydrogeology, soil science, agriculture, forestry, and climate change studies - to investigate hydrological, chemical and biological processes in the soil. The Lysimeter Research Group (LRG) was established in 1992 as a registered nonprofit association with free membership (ZVR number: 806128239, Austria). It is organized as an executive board with an international scientific steering committee. In the beginning the LRG focused mainly on nitrate contamination in Austria and its neighboring countries. Today the main intention of the LRG is to advance interdisciplinary exchange of information between researchers and users working in the field of lysimetry on an international level. The LRG also aims for the dissemination of scientific knowledge to the public and the support of decision makers. Main activities are the organization of a lysimeter conference every two years in Raumberg-Gumpenstein (Styria, Austria), the organization of excursions to lysimeter stations and related research sites around Europe, and the maintenance of a website (www.lysimeter.at). The website contains useful information about numerous European lysimeter stations regarding their infrastructure, instrumentation and operation, as well as related links and references which may help scientists to find an appropriate research site for potential cooperation projects. Currently, the website is becoming revised and updated. Up to now the LRG counts 485 registered members from 54 countries. Registration is possible free of charge via www.lysimeter.at. The LRG wants to attract new members from all over the world, intensify co-operation with other research groups, and enhance and support new and innovative ideas and technologies in lysimeter research.

  6. LifeMapper: Open Source Geospatial Tools for the Biological Community

    E-print Network

    Stewart, Aimee M.

    2007-11-14

    .0 Using and Creating Geospatial Data and Open Source Tools for the Biological Community Aimee Stewart, CJ Grady, Dave Vieglais, Jim Beach Natural History Museum and Biodiversity Institute University of Kansas Overview • Overall Goals • History • Current...

  7. Soil Biology & Biochemistry 38 (2006) 16081614 Endogeic earthworms differentially influence bacterial communities

    E-print Network

    Rilli, Matthias C.

    2006-01-01

    Soil Biology & Biochemistry 38 (2006) 1608­1614 Endogeic earthworms differentially influence bacterial communities associated with different soil aggregate size fractions Daniel L. Mummeya,Ã, Matthias influence soil structure. Although soil microorganisms are thought to be central to earthworm

  8. A Tale of Two Cultures: Building Community by Researching Community

    ERIC Educational Resources Information Center

    Drane, Jon; Cai, Wenjie; Wechsler, Andrea; Mussi, Eveline; Shi, Ye; Crommelin, Laura

    2012-01-01

    Upon beginning postgraduate research at the Faculty of Built Environment at UNSW, the authors were surprised to find themselves working in a library-like environment, where a culture of silence prevailed. Assuming initially that this was just how postgraduate research was, they soon learned that the building also housed a second postgraduate lab…

  9. Community-based research: barriers to recruitment of African Americans.

    PubMed

    Dancy, Barbara L; Wilbur, Joellen; Talashek, Marie; Bonner, Gloria; Barnes-Boyd, Cynthia

    2004-01-01

    The elimination of health disparities for African Americans requires culturally relevant, empirical knowledge, which in turn requires including African Americans in research studies. However, power-difference barriers and conceptual barriers continue to inhibit the recruitment of African Americans. The purpose of this article is to define and discuss certain barriers to the recruitment of African Americans into research studies and to present culturally and contextually sensitive strategies to overcoming these barriers. Power-difference barriers reflect unequal authority and often generate mistrust. Conceptual barriers reflect researchers' need for better understanding about African Americans. Effective strategies include collaboration with the community through a community advisory board and conducting community-based participatory action research. Also, integrating alternative conceptual frameworks with mainstream frameworks may reduce researchers' ideological assumptions about African Americans. To promote optimal recruitment of African Americans, researchers must be aware of power-difference barriers and conceptual barriers and move toward active collaboration with African American communities. PMID:15499312

  10. Emerging Technologies: An Opportunity for Weed Biology Research

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The main objective of the Emerging Technologies Symposium at the 2007 WSSA Annual Meeting was to provide the weed science community with the principles behind emerging technologies and how they can be used to study weed biology. Specifically, aspects and applications related to genomic database deve...

  11. PERSPECTIVE What is microbial community ecology?

    E-print Network

    PERSPECTIVE What is microbial community ecology? Allan Konopka Biological Sciences Division for rigorous progress in the field. Important elements of research in microbial community ecology include by a `microbial community' and identification of important characteristics specific to community ecology. What

  12. Rural community-academic partnership model for community engagement and partnered research | accrualnet.cancer.gov

    Cancer.gov

    Numerous studies were undertaken by the partnership including surveys of attitudes and barriers to clinical trial participation, access to trials, biobanking issues, and patient navigation performed by community health workers for cancer screening. The partnership conducted formative research in the rural communities on the topic of biospecimen donation. Findings indicated that informed consent preferences and privacy concerns were significant factors related to distrust of researchers who do research with biospecimens, especially when the specimens are stored for future use in genetics studies.

  13. Biological and Agricultural Engineering Research Projects The Department of Biological and Agricultural Engineering applies engineering principles to biologically-

    E-print Network

    Bahler, Dennis R.

    phases of agricultural and food production; to design and evaluate structures and environmental control for processing and marketing food and agricultural products; and to design sensor-based instrumentationBiological and Agricultural Engineering Research Projects 2013-14 The Department of Biological

  14. Building Identity and Community through Research

    ERIC Educational Resources Information Center

    Rude, Carolyn D.

    2015-01-01

    A field's identity and sustainability depend on its research as well as on programs, practice, and infrastructure. Research and practice have a reciprocal relationship, with practice identifying research questions and researchers answering those questions to improve practice. Technical communication research also has an exploratory purpose, using…

  15. The Biology of HIV/AIDS: A Case Study in Community Engagement

    ERIC Educational Resources Information Center

    Caccavo, Frank, Jr.

    2008-01-01

    This article describes a project for the Biology of HIV/AIDS course for undergraduate biology majors. This project challenged science students to engage the community on two different levels. They first had to interact directly and personally with HIV/AIDS activists. The proposal then encouraged them to think about and describe ways of engaging a…

  16. Microfluidic tools for cell biological research

    PubMed Central

    Velve-Casquillas, Guilhem; Le Berre, Maël; Piel, Matthieu; Tran, Phong T.

    2010-01-01

    Summary Microfluidic technology is creating powerful tools for cell biologists to control the complete cellular microenvironment, leading to new questions and new discoveries. We review here the basic concepts and methodologies in designing microfluidic devices, and their diverse cell biological applications. PMID:21152269

  17. RESEARCH ARTICLE Assessment of stream biological responses

    E-print Network

    Grenouillet, Gael

    the objectives of the European Water Framework Directive. In this study we propose an innovative approach observed in the aquatic invertebrate fauna from the Scheldt basin (Belgium). Results and discussion Our the relationship between environmental pollution and biological responses. This method allows the effects

  18. Interdisciplinary research and education at the biology-engineering-computer science interface: a perspective.

    PubMed

    Tadmor, Brigitta; Tidor, Bruce

    2005-09-01

    Progress in the life sciences, including genome sequencing and high-throughput experimentation, offers an opportunity for understanding biology and medicine from a systems perspective. This 'new view', which complements the more traditional component-based approach, involves the integration of biological research with approaches from engineering disciplines and computer science. The result is more than a new set of technologies. Rather, it promises a fundamental reconceptualization of the life sciences based on the development of quantitative and predictive models to describe crucial processes. To achieve this change, learning communities are being formed at the interface of the life sciences, engineering and computer science. Through these communities, research and education will be integrated across disciplines and the challenges associated with multidisciplinary team-based science will be addressed. PMID:16182211

  19. Postdoctoral Researcher Positions: Cancer Cell Biology, Cell Mechanics,

    E-print Network

    Rowat, Amy C.

    such as cancer and is critical in how physical forces initiate changes in gene expression. Now that we culture, cancer biology, genetic manipulations), and understand the molecular mechanisms underlyingPostdoctoral Researcher Positions: Cancer Cell Biology, Cell Mechanics, & High Throughput Screening

  20. Mutualistic Interactions and Community Structure in Biological Metacommunities

    NASA Astrophysics Data System (ADS)

    Rikvold, Per Arne; Filotas, Elise; Grant, Martin; Parrott, Lael

    2011-03-01

    The role of space in determining species coexistence and community structure is well established. However, previous studies mainly focus on simple competition and predation systems, and the role of mutualistic interspecies interactions is not well understood. Here we use a spatially explicit metacommunity model, in which new species enter by a mutation process, to study the effect of fitness-dependent dispersal on the structure of communities with interactions comprising mutualism, competition, and exploitation. We find that the diversity and interaction network undergo a nonequilibrium phase transition with increasing dispersal rate. Low dispersion rate favors spontaneous emergence of many dissimilar, strongly mutualistic and species-poor local communities. Due to the local dissimilarities, the global diversity is high. High dispersion rate promotes local biodiversity and supports similar, species-rich local communities with a wide range of interactions. The strong similarity between neighboring local communities leads to reduced global diversity. Supported by NSERC (Canada), FQRNT (Québec), NSF (U.S.A.)

  1. Outreach to Research Community Services and InfrastructureOffice of Extramural Research 2010 Report Pg.

    E-print Network

    Rau, Don C.

    Administration (eRA) ­ NIH Guide for Grants and Contracts ­ Reporting & Analysis ­ Research Condition & DiseaseOutreach to Research Community Contacts: Services and InfrastructureOffice of Extramural Research 2010 Report Pg. For further information: Major Accomplishment Major

  2. Synergy Landscapes: A Multilayer Network for Collaboration in Biological Research

    E-print Network

    Newberg, Heidi

    Synergy Landscapes: A Multilayer Network for Collaboration in Biological Research Konstantin Kuzmin of research. This multilayer network that we call Synergy Landscapes will allow us to identify broad patterns Landscapes also will dynamically track research trends in a customized framework that informs scientists

  3. The Honors Research Program Human Biology, Health & Society (HBHS)

    E-print Network

    Angenent, Lars T.

    45 The Honors Research Program Human Biology, Health & Society (HBHS) Nutritional Sciences (NS Requirements? 1) NS 3980 Research in Human Nutrition and Health. 1 credit, S/U grade only, Fall semester on the structures and practice of professional research conducted in human nutrition and health, a field

  4. Zoo Biology 27:470487 (2008) RESEARCH ARTICLE

    E-print Network

    Timberlake, William D.

    2008-01-01

    , experimentation, modeling, and teaching of general and specific animal biology and behavior through work in both institutions; research; animal welfare; zoo research; academic research; academia; behavior; conservation of social and individual behavior that is relevant to housing of captive animals, relations among nearby

  5. Participatory Research for Chronic Disease Prevention in Inuit Communities

    ERIC Educational Resources Information Center

    Gittelsohn, Joel; Roache, Cindy; Kratzmann, Meredith; Reid, Rhonda; Ogina, Julia; Sharma, Sangita

    2010-01-01

    Objective: To develop a community-based chronic disease prevention program for Inuit in Nunavut, Canada. Methods: Stakeholders contributed to intervention development through formative research [in-depth interviews (n = 45), dietary recalls (n = 42)], community workshops, group feedback and implementation training. Results: Key cultural themes…

  6. The Impact of Community Violence on School-Based Research

    ERIC Educational Resources Information Center

    Velsor-Friedrich, Barbara; Richards, Maryse; Militello, Lisa K.; Dean, Kyle C.; Scott, Darrick; Gross, Israel M.; Romeo, Edna

    2015-01-01

    Research conducted on youth exposure to violence has generally focused on documenting the prevalence of community violence and its emotional and behavioral implications. However, there is a dearth of information related to the impact of violence on the implementation and evaluation of community and school-based programs. This commentary examines…

  7. RESEARCH ARTICLE Local and landscape effects on the butterfly community

    E-print Network

    Debinski, Diane M.

    RESEARCH ARTICLE Local and landscape effects on the butterfly community in fragmented Midwest USA matrix, potentially impermeable to dis- persing individuals. We examined butterfly responses to local and configuration of the landscape affects butterfly community within the fragment, 2) determine whether explanatory

  8. RIKEN Quantitative Biology Center Cell Dynamics Research Core

    E-print Network

    Fukai, Tomoki

    RIKEN Quantitative Biology Center Cell Dynamics Research Core Laboratory for Cell Dynamics Observation Laboratory for Single Cell Gene Dynamics Laboratory for Cell Field Structure Laboratory for Cell Signaling Dynamics Laboratory for Comprehensive Bioimaging Laboratory for Nano-Bio Probes Laboratory

  9. Communities of the Biological Crossroads: An Extraordinary Outdoor Classroom.

    ERIC Educational Resources Information Center

    Maier, Charles R.

    1992-01-01

    Provides rich description of the biological diversity found in a 30-mile section of Nebraska known as the "biological crossroads." Argues that the seven major associations of the Niobrara River valley provide a great classroom. Includes a complete listing of plant species. (DDR)

  10. Principles Relevant to Health Research among Indigenous Communities

    PubMed Central

    O’Donahoo, Francis J.; Ross, Kirstin E.

    2015-01-01

    Research within Indigenous communities has been criticised for lacking community engagement, for being exploitative, and for poorly explaining the processes of research. To address these concerns, and to ensure ‘best practice’, Jamieson, et al. (2012) recently published a summary of principles outlined by the NHMRC (2003) in “one short, accessible document”. Here we expand on Jamieson et al.’s paper, which while commendable, lacks emphasis on the contribution that communities themselves can make to the research process and how culturally appropriate engagement, can allow this contribution to be assured, specifically with respect to engagement with remote communities. Engagement started before the research proposal is put forward, and continued after the research is completed, has integrity. We emphasise the value of narratives, of understanding cultural and customary behaviours and leadership, the importance of cultural legitimacy, and of the need for time, not just to allow for delays, but to ensure genuine participatory engagement from all members of the community. We also challenge researchers to consider the outcomes of their research, on the basis that increasing clinical evidence does not always result in better outcomes for the community involved. PMID:25996884

  11. Community dissemination and genetic research: moving beyond results reporting.

    PubMed

    Trinidad, Susan Brown; Ludman, Evette J; Hopkins, Scarlett; James, Rosalina D; Hoeft, Theresa J; Kinegak, Annie; Lupie, Henry; Kinegak, Ralph; Boyer, Bert B; Burke, Wylie

    2015-07-01

    The community-based participatory research (CBPR) literature notes that researchers should share study results with communities. In the case of human genetic research, results may be scientifically interesting but lack clinical relevance. The goals of this study were to learn what kinds of information community members want to receive about genetic research and how such information should be conveyed. We conducted eight focus group discussions with Yup'ik Alaska Native people in southwest Alaska (N?=?60) and 6 (N?=?61) with members of a large health maintenance organization in Seattle, Washington. Participants wanted to receive genetic information they "could do something about" and wanted clinically actionable information to be shared with their healthcare providers; they also wanted researchers to share knowledge about other topics of importance to the community. Although Alaska Native participants were generally less familiar with western scientific terms and less interested in web-based information sources, the main findings were the same in Alaska and Seattle: participants wished for ongoing dialogue, including opportunities for informal, small-group conversations, and receiving information that had local relevance. Effective community dissemination is more than a matter of presenting study results in lay language. Community members should be involved in both defining culturally appropriate communication strategies and in determining which information should be shared. Reframing dissemination as a two-way dialogue, rather than a one-way broadcast, supports the twin aims of advancing scientific knowledge and achieving community benefit. PMID:25900516

  12. NCI Community Oncology Research Program (NCORP) | Division of Cancer Prevention

    Cancer.gov

    The NCI Community Oncology Research Program (NCORP) is a national network of cancer care investigators, providers, academia, and other organizations that care for diverse populations in health systems. View the list of publications from NCORP.

  13. Investigate Boise Community Research Series Boise State University

    E-print Network

    Barrash, Warren

    , commerce, con- servation, transportation, social welfare and urban renewal. John Bieter, Ph.D. Dave Community Research Series is a nine-credit field school for the study of municipal civics and urban affairs

  14. Cancer Disparities Research Partnership (CDRP): Linking Academic & Community Radiation Oncology

    Cancer.gov

    Cancer Disparities Research Partnership (CDRP): Linking University & Community Radiation Oncology to Improve Cancer Outcomes Patrick D. Maguire, M.D. New Hanover Radiation Oncology Wilmington, NC CDRP: Partnerships in Radiation Oncology The Problem Clinical

  15. Social Change, the Future of the Community College, and the Future of Community College Research.

    ERIC Educational Resources Information Center

    Levin, Bernard H.

    Focusing on the social forces acting upon community colleges, this paper reviews possible modes of response by the colleges, focusing specifically on the role of institutional research. The first section presents an overview of the social forces affecting community colleges, discussing the 16% increase in two-year college enrollments in the…

  16. A Cervical Cancer Community-Based Participatory Research Project in a Native American Community

    ERIC Educational Resources Information Center

    Christopher, Suzanne; Gidley, Allison L.; Letiecq, Bethany; Smith, Adina; McCormick, Alma Knows His Gun

    2008-01-01

    The Messengers for Health on the Apsaalooke Reservation project uses a community-based participatory research (CBPR) approach and lay health advisors (LHAs) to generate knowledge and awareness about cervical cancer prevention among community members in a culturally competent manner. Northern Plains Native Americans, of whom Apsaalooke women are a…

  17. ORD's Sustainable & Healthy Communities (SHC) Nutrient research

    EPA Science Inventory

    Sustainable and healthy communities project 3.3.1 "Integrated Management of Reactive Nitrogen" aims to comprehensively examine the cascade of environmental economic and human health problems stemming from excess reactive N. Our goals are to improve understanding of the impacts o...

  18. 75 FR 6401 - Medical Devices Regulated by the Center for Biologics Evaluation and Research; Availability of...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-09

    ...No. FDA-2009-M-0513] Medical Devices Regulated by the Center for Biologics Evaluation and Research; Availability of Summaries...for Biologics Evaluation and Research (CBER). This list is intended...for Biologics Evaluation and Research (HFM-17), Food and...

  19. Repertoires: How to Transform a Project into a Research Community

    PubMed Central

    Leonelli, Sabina; Ankeny, Rachel A.

    2015-01-01

    How effectively communities of scientists come together and co-operate is crucial both to the quality of research outputs and to the extent to which such outputs integrate insights, data and methods from a variety of fields, laboratories and locations around the globe. This essay focuses on the ensemble of material and social conditions that makes it possible for a short-term collaboration, set up to accomplish a specific task, to give rise to relatively stable communities of researchers. We refer to these distinctive features as repertoires, and investigate their development and implementation across three examples of collaborative research in the life sciences. We conclude that whether a particular project ends up fostering the emergence of a resilient research community is partly determined by the degree of attention and care devoted by researchers to material and social elements beyond the specific research questions under consideration. PMID:26412866

  20. The Impact of Community Violence on School-Based Research.

    PubMed

    Velsor-Friedrich, Barbara; Richards, Maryse; Militello, Lisa K; Dean, Kyle C; Scott, Darrick; Gross, Israel M; Romeo, Edna

    2015-12-01

    Research conducted on youth exposure to violence has generally focused on documenting the prevalence of community violence and its emotional and behavioral implications. However, there is a dearth of information related to the impact of violence on the implementation and evaluation of community and school-based programs. This commentary examines the impact of community violence on a school-based research program. It is also a brief summary of the detrimental effects of exposure to community violence on psychological and academic functioning and health outcomes. An example of the impact of community violence on the implementation of a school-based asthma program will be addressed. Implications for school nurses will be discussed. PMID:26400832

  1. Critical Contexts for Biomedical Research in a Native American Community: Health Care, History, and Community Survival

    ERIC Educational Resources Information Center

    Sahota, Puneet Chawla

    2012-01-01

    Native Americans have been underrepresented in previous studies of biomedical research participants. This paper reports a qualitative interview study of Native Americans' perspectives on biomedical research. In-depth interviews were conducted with 53 members of a Southwest tribal community. Many interviewees viewed biomedical research studies as a…

  2. Community data portraiture : perceiving events, people, & ideas within a research community

    E-print Network

    Fritz, Doug, III

    2010-01-01

    As a research community grows, it is becoming increasingly difficult to understand its dynamics, its history, and the varying perspectives with which that history is interpreted and remembered. This thesis focuses on three ...

  3. Plant seeds in biological research in space

    NASA Technical Reports Server (NTRS)

    Miller, A. T.

    1982-01-01

    Data of 15 years of space flight and laboratory tests of plant seeds of 20 species, mainly on the combined and separate effects of launch vibration, ionizing radiation and weightlessness, are surveyed. It is concluded that plants do not show a pronounced response to space flight factors. Conditions of return to Earth, the number of heavy cosmic ray particles striking biological targets and effects of change in magnetic an electromagnetic fields have been little studied, and that more study of growing plants in space is needed.

  4. A community of practice: librarians in a biomedical research network.

    PubMed

    De Jager-Loftus, Danielle P; Midyette, J David; Harvey, Barbara

    2014-01-01

    Providing library and reference services within a biomedical research community presents special challenges for librarians, especially those in historically lower-funded states. These challenges can include understanding needs, defining and communicating the library's role, building relationships, and developing and maintaining general and subject specific knowledge. This article describes a biomedical research network and the work of health sciences librarians at the lead intensive research institution with librarians from primarily undergraduate institutions and tribal colleges. Applying the concept of a community of practice to a collaborative effort suggests how librarians can work together to provide effective reference services to researchers in biomedicine. PMID:24528265

  5. International Research: Its Role in Environmental Biology

    ERIC Educational Resources Information Center

    Higginson, John

    1970-01-01

    Proposes an international research laboratory to investigate environmental factors in human health. By international cooperation unnecessary duplication and waste of resources can be avoided and long-term studies can examine various world-wide environments. (JM)

  6. TUCSON HIGH MAGNET SCHOOL BIOLOGY & RESEARCH METHODS

    E-print Network

    Lega, Joceline

    in a report from the World Cancer Research Fund became sensa- tionalized and misreported in the international. In the fall, students studied how a brief mention of a con- nection between processed meat and cancer

  7. Community engagement in biomedical research in an African setting: the Kintampo Health Research Centre experience

    PubMed Central

    2013-01-01

    Background Community engagement (CE) is becoming relevant in health research activities; however, models for CE in health research are limited in developing countries. The Kintampo Health Research Centre (KHRC) conducts research to influence health policy locally and also internationally. Since its establishment in 1994 with the mandate of conducting relevant public health studies in the middle part of Ghana, KHRC has embarked on a series of clinical and operational studies involving community members. In these studies, community members have been engaged through community durbars before, during and also after all study implementations. Lessons learnt from these activities suggested the need to embark on further CE processes that could serve as a model for emerging research institutions based in African communities. Methods Interactive community durbars, workshops, in-depth discussions, focus group discussions and radio interactions were used as the main methods in the CE process. Results Community members outlined areas of research that they perceived as being of interest to them. Though community members expressed continual interest in our traditional areas of research in communicable, maternal, neonatal and child health, they were interested in new areas such as non- communicable diseases such as diabetes and hypertension. Misconceptions about KHRC and its research activities were identified and clarified. This research provided KHRC the opportunity to improve communication guidelines with the community and these are being used in engaging the community at various stages of our research, thus improving on the design and implementation of research. Conclusion KHRC has developed a culturally appropriate CE model based on mutual understanding with community members. The experience obtained in the CE process has contributed to building CE capacity in KHRC. Other health research institutions in developing countries could consider the experiences gained. PMID:24090148

  8. Biological research on fire in the West

    USGS Publications Warehouse

    U.S. Geological Survey

    2005-01-01

    Wildland fires are a natural feature of many ecosystems, including grasslands, forests, and shrublands. How-ever, years of fire exclusion have led to accumulations of dead fuels and increases in the density of fire-intolerant species. In most western states, recent fires burning in these altered ecosystems have caused significant damage and huge economic losses to homes, busi-nesses, and communities. They also have dis-turbed forests and rangelands as well as their associated watersheds, plants, and animals. Every western state is concerned about dam-age from such catastrophic fires, and there is strong interest from all sectors in prevent-ing and reducing the resulting damage in the future. There is also interest in the use of fire as a management tool for reducing hazards and restoring damaged ecosystems and for returning fire to its natural role in wilderness ecosystems.

  9. The perspectives of nonscience-major students on success in community college biology

    NASA Astrophysics Data System (ADS)

    Kim-Rajab, Oriana Sharon

    With more than 36% of nonscience-major community college students unable to successfully complete their general life science courses, graduation and transfer rates to four-year universities are negatively affected. Many students also miss important opportunities to gain some level of science proficiency. In an effort to address the problem of poor science achievement, this research project determined which factors were most significantly related to student success in a community college biology course. It also aimed to understand the student perspectives on which modifications to the course would best help them in the pursuit of success. Drawing heavily on the educational psychology schools of thought on motivation and self-efficacy of science learning, this study surveyed and interviewed students on their perceptions of which factors were related to success in biology and the changes they believed were needed in the course structure to improve success. The data revealed that the primary factors related to student success are the students' study skills and their perceived levels of self-efficacy. The findings also uncovered the critical nature of the professor's role in influencing the success of the students. After assessing the needs of the community college population, meaningful and appropriate curriculum and pedagogical reforms could be created to improve student learning outcomes. This study offered recommendations for reforms that can be used by science practitioners to provide a more nurturing and inspiring environment for all students. These suggestions revolved around the role of the instructor in influencing the self-efficacy and study skills of students. Providing more opportunities for students to interact in class, testing more frequently, establishing peer assistance programs, managing better the course material, and making themselves more available to students were at the forefront of the list. Examples of the potential benefits of increasing community college science success rates include improvement of student transfer rates and better preparation for employment. Because of the increasing importance of science in this modern age, improving science success rates can also have long-lasting positive effects on students' abilities to make decisions about their health, the economy, and to be productive citizens within our science-oriented society.

  10. Geology and biology of North Pacific cold seep communities

    NASA Astrophysics Data System (ADS)

    Robison, Bruce H.; Greene, H. Gary

    Because of crushing pressure, low temperature, and stygian darkness, the floor of the deep sea is one of the most hostile habitats on Earth. Until recently it was widely believed that the base of the food chain for all deep-sea communities was plant life in the ocean's sunlit upper layer. With the discovery of hydrothermal vent and cold-seep communities, which are based on chemical rather than solar energy, those beliefs were overturned. New studies focused on the animals that inhabit cold seep regions have begun to throw light on the geological basis of chemosynthetic communities. The initial results suggest a strong relationship between geologically determined fluid flux, and the diversity and abundance of animals at the seeps.

  11. Amphipols: Polymeric surfactants for membrane biology research.

    SciTech Connect

    Popot, J.-L.; Berry, E.A.; Charvolin, D.; Creuzenet, C.; Ebel, C.; Engelman, D.M.; Flotenmeyer, M.; Giusti, F.; Gohon, Y.; Hong, Q.; Lakey, J.H.; Leonard, K.; Shuman, H.A.; Timmins, P.; Warschawski, D.E.; Zito, F.; Zoonens, M.; Pucci, B.; Tribet, C.

    2003-06-20

    Membrane proteins classically are handled in aqueous solutions as complexes with detergents. The dissociating character of detergents, combined with the need to maintain an excess of them, frequently results in more or less rapid inactivation of the protein under study. Over the past few years, we have endeavored to develop a novel family of surfactants, dubbed amphipols (APs). APs are amphiphilic polymers that bind to the transmembrane surface of the protein in a noncovalent but, in the absence of a competing surfactant, quasi-irreversible manner. Membrane proteins complexed by APs are in their native state, stable, and they remain water soluble in the absence of detergent or free APs. An update is presented of the current knowledge about these compounds and their demonstrated or putative uses in membrane biology.

  12. Biological soil crusts (biocrusts) as a model system in community, landscape and ecosystem ecology

    USGS Publications Warehouse

    Bowker, Matthew A.; Maestre, Fernando T.; Eldridge, David; Belnap, Jayne; Castillo-Monroy, Andrea; Escolar, Cristina; Soliveres, Santiago

    2014-01-01

    Model systems have had a profound influence on the development of ecological theory and general principles. Compared to alternatives, the most effective models share some combination of the following characteristics: simpler, smaller, faster, general, idiosyncratic or manipulable. We argue that biological soil crusts (biocrusts) have unique combinations of these features that should be more widely exploited in community, landscape and ecosystem ecology. In community ecology, biocrusts are elucidating the importance of biodiversity and spatial pattern for maintaining ecosystem multifunctionality due to their manipulability in experiments. Due to idiosyncrasies in their modes of facilitation and competition, biocrusts have led to new models on the interplay between environmental stress and biotic interactions and on the maintenance of biodiversity by competitive processes. Biocrusts are perhaps one of the best examples of micro-landscapes—real landscapes that are small in size. Although they exhibit varying patch heterogeneity, aggregation, connectivity and fragmentation, like macro-landscapes, they are also compatible with well-replicated experiments (unlike macro-landscapes). In ecosystem ecology, a number of studies are imposing small-scale, low cost manipulations of global change or state factors in biocrust micro-landscapes. The versatility of biocrusts to inform such disparate lines of inquiry suggests that they are an especially useful model system that can enable researchers to see ecological principles more clearly and quickly.

  13. Bridging Emotion Research: From Biology to Social Structure

    ERIC Educational Resources Information Center

    Rogers, Kimberly B.; Kavanagh, Liam

    2010-01-01

    Emotion research demonstrates that problems of theoretical interest or practical significance are not divided neatly along disciplinary boundaries. Researchers acknowledge both organic and social underpinnings of emotion, but the intersections between biological and structural processes can be difficult to negotiate. In this article, the authors…

  14. Community-Based Participatory Research Conceptual Model: Community Partner Consultation and Face Validity.

    PubMed

    Belone, Lorenda; Lucero, Julie E; Duran, Bonnie; Tafoya, Greg; Baker, Elizabeth A; Chan, Domin; Chang, Charlotte; Greene-Moton, Ella; Kelley, Michele A; Wallerstein, Nina

    2016-01-01

    A national community-based participatory research (CBPR) team developed a conceptual model of CBPR partnerships to understand the contribution of partnership processes to improved community capacity and health outcomes. With the model primarily developed through academic literature and expert consensus building, we sought community input to assess face validity and acceptability. Our research team conducted semi-structured focus groups with six partnerships nationwide. Participants validated and expanded on existing model constructs and identified new constructs based on "real-world" praxis, resulting in a revised model. Four cross-cutting constructs were identified: trust development, capacity, mutual learning, and power dynamics. By empirically testing the model, we found community face validity and capacity to adapt the model to diverse contexts. We recommend partnerships use and adapt the CBPR model and its constructs, for collective reflection and evaluation, to enhance their partnering practices and achieve their health and research goals. PMID:25361792

  15. Community College Journal for Research and Planning.

    ERIC Educational Resources Information Center

    Carter, Edith H., Ed.

    1981-01-01

    This journal, designed as a forum for the exchange of ideas among research and planning professionals, offers articles of research studies and practices. After Timothy Lightfield highlights upcoming professional association events, Janice S. Ancarrow's article, "The National Vocational Education Data Reporting and Accounting System (VEDS): Its…

  16. Vision and Change in the Biology Community: Snapshots of Change

    ERIC Educational Resources Information Center

    Vasaly, Helen L.; Feser, Jason; Lettrich, Matthew D.; Correa, Kevin; Denniston, Katherine J.

    2014-01-01

    When the authors were first invited to write these columns, the editors felt it would be an interesting way to give the readers of "CBE - Life Sciences Education" an agency's-eye view of its concerns, workings, and accomplishments. This column is written with that charge in mind. It is intended to inform the community about outreach…

  17. The dilemma of dual use biological research: Polish perspective.

    PubMed

    Czarkowski, Marek

    2010-03-01

    Biological research with legitimate scientific purpose that may be misused to pose a biological threat to public health and/or national security is termed dual use. In Poland there are adequate conditions for conducting experiments that could be qualified as dual use research, and therefore, a risk of attack on Poland or other countries exists. Optimal solutions for limiting such threats are required, and the national system of biosecurity should enable early, reliable, and complete identification of this type of research. Scientists should have a fundamental role in this process, their duty being to immediately, upon identification, report research with dual use potential. An important entity in the identification system of dual use research should also be the Central Register of Biological and Biomedical Research, which gathers information about all biological and biomedical research being conducted in a given country. Publishers, editors, and review committees of journals and other scientific publications should be involved in evaluating results of clinical trials. The National Council of Biosecurity should be the governmental institution responsible for developing a system of dual use research threat prevention. Its role would be to develop codes of conduct, form counsel of expertise, and monitor the problem at national level, while the Dual Use Research Committee would be responsible for individual cases. In Poland, current actions aiming to provide biological safety were based on developing and passing an act about genetically modified organisms (GMO's) and creating a GMO Committee. Considering experiences of other nations, one should view these actions as fragmentary, and thus insufficient protection against dual use research threats. PMID:18546061

  18. Research on Schools, Neighborhoods and Communities: Toward Civic Responsibility

    ERIC Educational Resources Information Center

    Tate, William F., IV, Ed.

    2012-01-01

    "Research on Schools, Neighborhoods, and Communities: Toward Civic Responsibility" focuses on research and theoretical developments related to the role of geography in education, human development, and health. William F. Tate IV, the Edward Mallinckrodt Distinguished University Professor in Arts & Sciences at Washington University in St. Louis and…

  19. Community-Based Research Assessments: Some Principles and Practices.

    ERIC Educational Resources Information Center

    Marullo, Sam; Cooke, Deanna; Willis, Jason; Rollins, Alexandra; Burke, Jacqueline; Bonilla, Paul; Waldref, Vanessa

    2003-01-01

    Examines benefits and challenges of undertaking assessments in community-based research (CBR). Such assessments are compared and contrasted to more traditional research processes. Further, the challenges of integrating CBR assessments into an ongoing social change initiative are analyzed. Five principles to guide CBR assessments are articulated. A…

  20. Ethical Issues Affecting Human Participants in Community College Research

    ERIC Educational Resources Information Center

    Wurtz, Keith

    2011-01-01

    The increasing demand of constituents to conduct analyses in order to help inform the decision-making process has led to the need for Institutional Research (IR) guidelines for community college educators. One method of maintaining the quality of research conducted by IR staff is to include professional development about ethics. This article…

  1. Rural Communities and Rural Social Issues: Priorities for Research.

    ERIC Educational Resources Information Center

    Black, Alan; Duff, John; Saggers, Sherry; Baines, Patricia

    This report recommends priorities for research into rural communities and rural social issues in Australia, based on an extensive literature review, surveys of policymaking agencies and researchers, and discussion at a national workshop in May 1999. Chapters 1-2 outline the study's background, purpose, and methodology; discuss issues in the…

  2. "Applied Expertise"--A Redefinition of Research in Community Colleges.

    ERIC Educational Resources Information Center

    Jones, David M.

    1982-01-01

    Argues that teaching excellence depends upon subject knowledge and professional refreshment and growth. Challenges community college practices that emphasize teaching roles over research and scholarship. Suggests that professional growth can be achieved through continuous research and scholarship and the practice of applied expertise. (DMM)

  3. The evolving field of imaging mass spectrometry and its impact on future biological research

    PubMed Central

    Watrous, Jeramie D.; Alexandrov, Theodore; Dorrestein, Pieter C.

    2012-01-01

    Within the past decade, imaging mass spectrometry has been increasingly recognized as an indispensable technique for studying biological systems. Its rapid evolution has resulted in an impressive array of instrument variations and sample applications, yet the tools and data are largely confined to specialists. It is therefore important that at this junction the IMS community begin to establish IMS as a permanent fixture in life sciences research thereby making the technology and/or the data approachable by non-mass spectrometrists, leading to further integration into biological and clinical research. In this perspective article, we provide insight into the evolution and current state of imaging mass spectrometry and propose some of the directions that IMS could develop in order to stay on course to become one of the most promising new tools in life science research. PMID:21322093

  4. Bringing the physical sciences into your cell biology research.

    PubMed

    Robinson, Douglas N; Iglesias, Pablo A

    2012-11-01

    Historically, much of biology was studied by physicists and mathematicians. With the advent of modern molecular biology, a wave of researchers became trained in a new scientific discipline filled with the language of genes, mutants, and the central dogma. These new molecular approaches have provided volumes of information on biomolecules and molecular pathways from the cellular to the organismal level. The challenge now is to determine how this seemingly endless list of components works together to promote the healthy function of complex living systems. This effort requires an interdisciplinary approach by investigators from both the biological and the physical sciences. PMID:23112230

  5. Research, Policy, and Practice in Action: The Office of Community College Research and Leadership

    ERIC Educational Resources Information Center

    Zamani-Gallaher, Eboni M.; Bragg, Debra D.

    2015-01-01

    The Office for Community College Research and Leadership (OCCRL) founded in 1989 focuses on P-20 education and the role of community colleges in facilitating educational access and equity. This article highlights the work of OCCRL as a research center that bridges inquiry, policy, and practice in contributing to the national dialogue on relevant…

  6. openBIS: a flexible framework for managing and analyzing complex data in biology research

    PubMed Central

    2011-01-01

    Background Modern data generation techniques used in distributed systems biology research projects often create datasets of enormous size and diversity. We argue that in order to overcome the challenge of managing those large quantitative datasets and maximise the biological information extracted from them, a sound information system is required. Ease of integration with data analysis pipelines and other computational tools is a key requirement for it. Results We have developed openBIS, an open source software framework for constructing user-friendly, scalable and powerful information systems for data and metadata acquired in biological experiments. openBIS enables users to collect, integrate, share, publish data and to connect to data processing pipelines. This framework can be extended and has been customized for different data types acquired by a range of technologies. Conclusions openBIS is currently being used by several SystemsX.ch and EU projects applying mass spectrometric measurements of metabolites and proteins, High Content Screening, or Next Generation Sequencing technologies. The attributes that make it interesting to a large research community involved in systems biology projects include versatility, simplicity in deployment, scalability to very large data, flexibility to handle any biological data type and extensibility to the needs of any research domain. PMID:22151573

  7. Promoting Environmental Justice through Community-Based Participatory Research: The Role of Community and Partnership Capacity

    ERIC Educational Resources Information Center

    Minkler, Meredith; Vasquez, Victoria Breckwich; Tajik, Mansoureh; Petersen, Dana

    2008-01-01

    Community-based participatory research (CBPR) increasingly is being used to study and address environmental justice. This article presents the results of a cross-site case study of four CBPR partnerships in the United States that researched environmental health problems and worked to educate legislators and promote relevant public policy. The…

  8. Temporal change in biological community structure in the Fountain Creek basin, Colorado, 2001-2008

    USGS Publications Warehouse

    Zuellig, Robert E.; Bruce, James F.; Stogner, Robert W.

    2010-01-01

    In 2001, the U.S. Geological Survey, in cooperation with Colorado Springs City Engineering, began a study to better understand the relations between environmental characteristics and biological communities in the Fountain Creek basin in order to aide water-resource management and guide future monitoring activities. To accomplish this task, environmental (streamflow, habitat, and water chemistry) and biological (fish and macroinvertebrate) data were collected annually at 24 sites over a 6- or 8-year period (fish, 2003 to 2008; macroinvertebrates, 2001 to 2008). For this report, these data were first analyzed to determine the presence of temporal change in macroinvertebrate and fish community structure among years using nonparametric multivariate statistics. Where temporal change in the biological communities was found, these data were further analyzed using additional nonparametric multivariate techniques to determine which subset of selected streamflow, habitat, or water-chemistry variables best described site-specific changes in community structure relative to a gradient of urbanization. This study identified significant directional patterns of temporal change in macroinvertebrate and fish community structure at 15 of 24 sites in the Fountain Creek basin. At four of these sites, changes in environmental variables were significantly correlated with the concurrent temporal change identified in macroinvertebrate and fish community structure (Monument Creek above Woodmen Road at Colorado Springs, Colo.; Monument Creek at Bijou Street at Colorado Springs, Colo.; Bear Creek near Colorado Springs, Colo.; Fountain Creek at Security, Colo.). Combinations of environmental variables describing directional temporal change in the biota appeared to be site specific as no single variable dominated the results; however, substrate composition variables (percent substrate composition composed of sand, gravel, or cobble) collectively were present in 80 percent of the environmental variable subsets that were significantly correlated with temporal change in the macroinvertebrate and fish community structure. Other important environmental variables related to temporal change in the biological community structure included those describing channel form (streambank height) and streamflow (normalized annual mean daily flow, high flood-pulse count). Site-specific results from this study were derived from a relatively small number of observations (6 or 8 years of data); therefore, additional years of data may reveal other sites with temporal change in biological community structure, or could define stronger and more consistent linkages between environmental variables and observed temporal change. Likewise current variable subsets could become weaker. Nonetheless, there were several sites where temporal change was detected in this study that could not be explained by the available environmental variables studied herein. Modification of current data-collection activities may be necessary to better understand site-specific temporal relations between biological communities and environmental variables.

  9. Community-Based Review of Research Across Diverse Community Contexts: Key Characteristics, Critical Issues, and Future Directions.

    PubMed

    Shore, Nancy; Ford, Angela; Wat, Eric; Brayboy, Missy; Isaacs, Mei-Ling; Park, Alice; Strelnick, Hal; Seifer, Sarena D

    2015-07-01

    A growing number of community-based organizations and community-academic partnerships are implementing processes to determine whether and how health research is conducted in their communities. These community-based research review processes (CRPs) can provide individual and community-level ethics protections, enhance the cultural relevance of study designs and competence of researchers, build community and academic research capacity, and shape research agendas that benefit diverse communities. To better understand how they are organized and function, representatives of 9 CRPs from across the United States convened in 2012 for a working meeting. In this article, we articulated and analyzed the models presented, offered guidance to communities that seek to establish a CRP, and made recommendations for future research, practice, and policy. PMID:25973834

  10. Building Communities: Teachers Researching Literacy Lives

    ERIC Educational Resources Information Center

    Cremin, Teresa; Mottram, Marilyn; Collins, Fiona; Powell, Sacha; Drury, Rose

    2012-01-01

    In the light of wide recognition that the traffic between home and school is traditionally one-way, this article reports on a deliberately counter-cultural project that involved teachers in researching children's everyday literacy practices and "funds of knowledge" (Gonzalez, Moll, & Amanti, 2005) over a year. Eighteen primary teachers from 10…

  11. Industrial methodology for process verification in research (IMPROVER): toward systems biology verification

    PubMed Central

    Meyer, Pablo; Hoeng, Julia; Rice, J. Jeremy; Norel, Raquel; Sprengel, Jörg; Stolle, Katrin; Bonk, Thomas; Corthesy, Stephanie; Royyuru, Ajay; Peitsch, Manuel C.; Stolovitzky, Gustavo

    2012-01-01

    Motivation: Analyses and algorithmic predictions based on high-throughput data are essential for the success of systems biology in academic and industrial settings. Organizations, such as companies and academic consortia, conduct large multi-year scientific studies that entail the collection and analysis of thousands of individual experiments, often over many physical sites and with internal and outsourced components. To extract maximum value, the interested parties need to verify the accuracy and reproducibility of data and methods before the initiation of such large multi-year studies. However, systematic and well-established verification procedures do not exist for automated collection and analysis workflows in systems biology which could lead to inaccurate conclusions. Results: We present here, a review of the current state of systems biology verification and a detailed methodology to address its shortcomings. This methodology named ‘Industrial Methodology for Process Verification in Research’ or IMPROVER, consists on evaluating a research program by dividing a workflow into smaller building blocks that are individually verified. The verification of each building block can be done internally by members of the research program or externally by ‘crowd-sourcing’ to an interested community. www.sbvimprover.com Implementation: This methodology could become the preferred choice to verify systems biology research workflows that are becoming increasingly complex and sophisticated in industrial and academic settings. Contact: gustavo@us.ibm.com PMID:22423044

  12. Consulting the community: public expectations and attitudes about genetics research

    PubMed Central

    Etchegary, Holly; Green, Jane; Dicks, Elizabeth; Pullman, Daryl; Street, Catherine; Parfrey, Patrick

    2013-01-01

    Genomic discoveries and technologies promise numerous opportunities for improving health. Key to these potential health improvements, however, are health-care consumers' understanding and acceptance of these new developments. We identified community groups and invited them to a public information-consultation session in order to explore public awareness, perception and expectations about genetics and genomics research. One hundred and four members of seven community groups in Newfoundland, Canada took part in the community sessions. Content analysis of participant comments revealed they were largely hopeful about genetics research in its capacity to improve health; however, they did not accept such research uncritically. Complex issues arose during the community consultations, including the place of genetics in primary care, the value of genetics for personal health, and concerns about access to and uses of genetic information. Participants unequivocally endorsed the value of public engagement with these issues. The rapid pace of discoveries in genomics research offers exciting opportunities to improve population health. However, public support will be crucial to realize health improvements. Our findings suggest that regular, transparent dialog between researchers and the public could allow a greater understanding of the research process, as well as assist in the design of efficient and effective genetic health services, informed by the public that will use them. PMID:23591403

  13. Consulting the community: public expectations and attitudes about genetics research.

    PubMed

    Etchegary, Holly; Green, Jane; Dicks, Elizabeth; Pullman, Daryl; Street, Catherine; Parfrey, Patrick

    2013-12-01

    Genomic discoveries and technologies promise numerous opportunities for improving health. Key to these potential health improvements, however, are health-care consumers' understanding and acceptance of these new developments. We identified community groups and invited them to a public information-consultation session in order to explore public awareness, perception and expectations about genetics and genomics research. One hundred and four members of seven community groups in Newfoundland, Canada took part in the community sessions. Content analysis of participant comments revealed they were largely hopeful about genetics research in its capacity to improve health; however, they did not accept such research uncritically. Complex issues arose during the community consultations, including the place of genetics in primary care, the value of genetics for personal health, and concerns about access to and uses of genetic information. Participants unequivocally endorsed the value of public engagement with these issues. The rapid pace of discoveries in genomics research offers exciting opportunities to improve population health. However, public support will be crucial to realize health improvements. Our findings suggest that regular, transparent dialog between researchers and the public could allow a greater understanding of the research process, as well as assist in the design of efficient and effective genetic health services, informed by the public that will use them. PMID:23591403

  14. Inside/out: Challenges of conducting research in lesbian communities.

    PubMed

    Eliason, Michele J

    2016-01-01

    Conducting research within one's own community can present challenges that are rarely addressed by graduate education, articles, or books on research design. Binary notions of insider and outsider are too simplistic; rather insider/outsider positions exist on a continuum. This article explores how the researcher's shifting position affects every aspect of a study of lesbian, bisexual, and/or queer women. Helpful theoretical frameworks include feminist research principles and intersectionality, and the article ends with lessons learned about tackling taboo topics, sensitivity to language, embracing diversity, researcher reputation, and looking upstream for solutions. PMID:26701774

  15. Through her research, Amanda Southwood, assistant professor of biology and marine biology at the University of North Carolina Wilmington (UNCW),

    E-print Network

    Mallin, Michael

    Through her research, Amanda Southwood, assistant professor of biology and marine biology her to specialize in the thermal biology of marine vertebrates, particularly sea turtles. In her, Canada after completing undergraduate work in marine biology atAuburn University. She also performed

  16. Increasing Health Research Literacy through Outreach and Networking: Why Translational Research Should Matter to Communities

    ERIC Educational Resources Information Center

    Dwyer-White, Molly; Choate, Celeste; Markel, Dorene S

    2015-01-01

    Background: Increasingly clinical and health research awareness is a priority for health and medical research communities. Translational research, including the prevention and treatment of conditions, relies upon proper funding as well as public participation in research studies. This requires executing more effective communication strategies to…

  17. The biological effects of pollutants: Results and lessons learned from recent research

    SciTech Connect

    Bayne, B.L. )

    1988-09-01

    There are currently two major problems in the research and development of biological effect techniques for use in marine systems: (1) the need for proper integration between response measurements at the cellular, organismal, population and community levels, in order to ensure predictability across hierarchical levels of complexity; and (2) the need for practical evaluation and inter-calibration of effects measurements in real field situations. The results of various field studies in Europe, including a practical workshop coordinated by the IOC Group of Experts on the Effects of Pollution, will be reviewed briefly and certain lessons learned will be discussed. Recent research aimed at exploring causal links between various components of the stress response in bivalve molluscs will be discussed to demonstrate the extent to which current studies are addressing the problem of integration within whole organisms and communities of species.

  18. The Psychology and Biological Sciences major is intended to reflect the interdisciplinary nature of current research in the fields of Psychology and

    E-print Network

    Spirtes, Peter

    Learning/Community Instruction Information/Library Science Higher Education Administration and StudentThe Psychology and Biological Sciences major is intended to reflect the interdisciplinary nature of current research in the fields of Psychology and Biology, as well as the national trend in some

  19. Weed Biology and Management 5, 6976 (2005) RESEARCH PAPER

    E-print Network

    Lehmann, Johannes

    2005-01-01

    Weed Biology and Management 5, 69­76 (2005) RESEARCH PAPER Weed composition and cover after three, could lead to increased weed problems for agricultural production. This experiment was conducted to assess weed pressure and species composition on plots receiving various inorganic and organic soil

  20. The Research Proposal in Biomechanical and Biological Engineering Courses

    ERIC Educational Resources Information Center

    Harrison, Roger G.; Nollert, Matthias U.; Schmidtke, David W.; Sikavitsas, Vassilios I.

    2006-01-01

    Students in four biochemical and biological engineering courses for upper-­level undergraduates and graduate students were required to write a research proposal. Breaking the requirements down into segments (such as a summary with specific aims, rough draft, and final draft) due on different dates helped make the assignment more manageable for the…

  1. Biologically Enhanced Carbon Sequestration: Research Needs and Opportunities

    SciTech Connect

    Oldenburg, Curtis; Oldenburg, Curtis M.; Torn, Margaret S.

    2008-03-21

    Fossil fuel combustion, deforestation, and biomass burning are the dominant contributors to increasing atmospheric carbon dioxide (CO{sub 2}) concentrations and global warming. Many approaches to mitigating CO{sub 2} emissions are being pursued, and among the most promising are terrestrial and geologic carbon sequestration. Recent advances in ecology and microbial biology offer promising new possibilities for enhancing terrestrial and geologic carbon sequestration. A workshop was held October 29, 2007, at Lawrence Berkeley National Laboratory (LBNL) on Biologically Enhanced Carbon Sequestration (BECS). The workshop participants (approximately 30 scientists from California, Illinois, Oregon, Montana, and New Mexico) developed a prioritized list of research needed to make progress in the development of biological enhancements to improve terrestrial and geologic carbon sequestration. The workshop participants also identified a number of areas of supporting science that are critical to making progress in the fundamental research areas. The purpose of this position paper is to summarize and elaborate upon the findings of the workshop. The paper considers terrestrial and geologic carbon sequestration separately. First, we present a summary in outline form of the research roadmaps for terrestrial and geologic BECS. This outline is elaborated upon in the narrative sections that follow. The narrative sections start with the focused research priorities in each area followed by critical supporting science for biological enhancements as prioritized during the workshop. Finally, Table 1 summarizes the potential significance or 'materiality' of advances in these areas for reducing net greenhouse gas emissions.

  2. STEM Diversity Postdoctoral Research Associate Department of Plant Biology

    E-print Network

    Kent, Angela

    .inclusiveillinois.illinois.edu). The University of Illinois conducts criminal background checks on all job candidates upon acceptanceSTEM Diversity Postdoctoral Research Associate Department of Plant Biology University of Illinois mentor will be assigned. Minimum Qualifications: Ph.D. or equivalent terminal degree is required

  3. Biomedical Research Experiences for Biology Majors at a Small College

    ERIC Educational Resources Information Center

    Stover, Shawn K.; Mabry, Michelle L.

    2010-01-01

    A program-level assessment of the biology curriculum at a small liberal arts college validates a previous study demonstrating success in achieving learning outcomes related to content knowledge and communication skills. Furthermore, research opportunities have been provided to complement pedagogical strategies and give students a more complete…

  4. RESEARCH Open Access Biological adhesion of the flatworm

    E-print Network

    Schärer, Lukas

    RESEARCH Open Access Biological adhesion of the flatworm Macrostomum lignano relies on a duo Ladurner1* Abstract Background: Free-living flatworms, in both marine and freshwater environments, are able present the detailed morphology of the adhesive organs of the free-living marine flatworm Macrostomum

  5. Glimpses of Biological Research and Education in Cuba.

    ERIC Educational Resources Information Center

    Margulis, Lynn; Kunz, Thomas H.

    1984-01-01

    Discusses Cuban medical facilities, biological research (focusing on sugarcane tissue culture, interferon, hybrid cattle, tropical fruits, and yeast biosynthetic pathways), science education programs at all levels, and institutions of higher education. Also examines such concerns as the Cuban literacy rate and efforts to improve the environment.…

  6. Bacterial community dynamics over successional stages of Australian biological soil crusts

    NASA Astrophysics Data System (ADS)

    Chilton, Angela; Woodhouse, Jason; Neilan, Brett

    2015-04-01

    A key aspect for successful ecological rehabilitation is understanding the naturally occurring ecosystem and landscape function which is to be restored. This allows for recovery indicators to be identified and criteria to be developed to assess progress and outcomes. In arid rangelands, environmental stresses result in characteristically heterogeneous landscapes where biological soil crusts (BSCs) cover large expanses of inter-plant areas. Here, BSCs perform crucial roles in nutrient cycling and re-distribution, affect hydrological patterns and stabilise the soil surface. They also serve as a large reservoir of microbial and avascular plant biodiversity. The recognition of these important roles has resulted in increased global arid rehabilitation efforts employing BSCs. Within Australia, research has focused on the macro components of BSCs including lichens and mosses, however, there have been insufficient studies examining the BSC bacterial communities and their dynamics over different successional stages. This project surveyed the bacterial community of crust-free soil and three successional stages of undisturbed BSCs from New South Wales (NSW), Australia, in order to provide reference standards of naturally occurring Australian BSCs. Visual assessments were conducted and BSCs were categorised as Early, Mid or Late stage depending on colour, thickness, topography and presence of lichens and mosses. The crust-free soil and different stages were sampled within three 50 m2 plots of the same edaphic conditions near the town of Cobar, NSW. High throughput sequencing using the Illumina MiSeq platform was performed targeting the V2 region of the 16S rRNA gene. Preliminary analysis has revealed a clear distinction between the crust-free and crusted soil while Canonical Analysis of Principal Co-ordinates (CAP) suggests the presence of two distinct BSC microbial communities despite three stages being sampled. Across all sample types, the dominant phyla were Actinobacteria, Cyanobacteria and Proteobacteria. Further analysis will determine indicator species which may be used to track the recovery of Australian BSCs in disturbed lands as well as identify pioneer genera as candidate organisms for inoculum based rehabilitation trials. It is important for BSC research to continue in order to adequately direct rehabilitation efforts and for disturbed arid lands to return to self-sustaining ecosystems.

  7. Realities and myths of safety issues for community researchers working in a marginalized African American community.

    PubMed

    Suarez-Balcazar, Yolanda; Kinney, Leah

    2006-06-01

    Community psychologists often conduct research in collaboration with marginalized communities in which safety is an issue. However, we rarely talk about what specific safety issues we experience and how we deal with them. Our story describes the realities and myths of neighborhood safety that were experienced in a low-income African American neighborhood of Chicago, while collaborating on a project designed to increase access to the Internet to obtain health information. We examine both the challenges experienced and our responses in the context of a community intervention planned, implemented, and evaluated by a partnership team composed of various stakeholders. Critical lessons such as the importance of building on community strengths and the need to be aware of our own biases are discussed. PMID:16791515

  8. Therapeutic research in low-income countries: studying trial communities.

    PubMed

    Whyte, Susan Reynolds

    2014-11-01

    Social scientists undertaking studies of transnational medical research in developing countries focus on 'trial communities': networks of funders, institutions, researchers, clinical staff, fieldworkers and study participants. They relate these to the political economy that brings powerful research resources to poor settings. Whereas bioethicists tend to consider universal ethical requirements, social scientists examine how ethics are practiced in given situations in the light of the concerns and interests held by different parties involved in medical research. In conditions of poverty, high morbidity and weak public health services, research subjects are heavily induced by the prospect of high quality medical care and other benefits that researchers seem to offer. Studies of medical research undertaken by well-established internationally funded institutions in Africa show that parents are keen to have their children 'join' projects at these organisations. They assess benefits and risks less in terms of specific research projects and more in terms of their overall trust in the care these institutions are known to have provided previously for others in the community. Bioethics should widen its scope beyond concern with protecting individual subjects from the risks of specific research projects. It should recognise that clinical and research functions are indistinguishable for many participants, who want information on results of clinical investigations and sustained support for improving the health of their children. PMID:24748638

  9. Research and Policy: Can Online Learning Communities Foster Professional Development?

    ERIC Educational Resources Information Center

    Beach, Richard

    2012-01-01

    This column posits enhancing professional development through uses of digital tools to create professional learning communities (PLCs) designed to support collective inquiry and action research leading to schoolwide improvement. These digital tools include a social networking/discussion forum for teacher collaboration; teachers' individual…

  10. Architect for Research on Gender and Community Colleges

    ERIC Educational Resources Information Center

    Lester, Jaime

    2009-01-01

    A quick search in the "Community College Journal of Research and Practice" for Barbara Townsend's name produces 62 entries. A handful of those entries are the articles that Barbara has authored, but many more are articles that cite her work. Another search on the Web of Science database that tracks citations in a specific set of peer-reviewed…

  11. Thinking Like Researchers: An ESL Project that Investigates Local Communities

    ERIC Educational Resources Information Center

    McPherron, Paul; Randolph, Patrick T.

    2013-01-01

    Drawing on task-based and intercultural teaching approaches, this article presents an ESL classroom project at two different university settings in which students investigate aspects of their local communities through the use of ethnographic and observational research techniques. For related reasons, the instructors at each university developed…

  12. Using Community-Based Participatory Research to Ameliorate Cancer Disparities

    ERIC Educational Resources Information Center

    Gehlert, Sarah; Coleman, Robert

    2010-01-01

    Although much attention has been paid to health disparities in the past decades, interventions to ameliorate disparities have been largely unsuccessful. One reason is that the interventions have not been culturally tailored to the disparity populations whose problems they are meant to address. Community-engaged research has been successful in…

  13. Community Based Rehabilitation: Information Accumulation & Exchange. South Asian Research Notes.

    ERIC Educational Resources Information Center

    Miles, M.

    This paper reviews research and evaluates information gathered on disabilities and service development in South Asia, especially India and Pakistan. The concept of "community-based rehabilitation" (CBR), which stresses the need for rehabilitation efforts rooted in the context of local cultural concepts, is discussed. The paper emphasizes the…

  14. The Community College Baccalaureate Movement: Cutting-Edge Dissertation Research

    ERIC Educational Resources Information Center

    Hrabak, Michael R.

    2009-01-01

    In this review of dissertations, the researcher presents summaries of 10 of the most recent and cutting-edge dissertations focusing on the ever-growing and complex field of the community college baccalaureate movement. These studies focus on the gamut of specific legislation, case studies of particular programs and schools, financing of such…

  15. Toward Community Research and Coalitional Literacy Practices for Educational Justice

    ERIC Educational Resources Information Center

    Campano, Gerald; Ghiso, María Paula; Yee, Mary; Pantoja, Alicia

    2013-01-01

    Community-based research can provide an avenue for understanding the complexities of students' and families' lives and working together for educational justice through what we refer to as coalitional literacy practices. In this article, we share a critical incident about a student's absence from school as an illustrative case of the…

  16. Biological oxygen demand optode analysis of coral reef-associated microbial communities exposed to algal exudates

    PubMed Central

    Hatay, M; Haas, AF; Robinett, NL; Barott, K; Vermeij, MJA; Marhaver, KL; Meirelles, P; Thompson, F; Rohwer, F

    2013-01-01

    Algae-derived dissolved organic matter has been hypothesized to induce mortality of reef building corals. One proposed killing mechanism is a zone of hypoxia created by rapidly growing microbes. To investigate this hypothesis, biological oxygen demand (BOD) optodes were used to quantify the change in oxygen concentrations of microbial communities following exposure to exudates generated by turf algae and crustose coralline algae (CCA). BOD optodes were embedded with microbial communities cultured from Montastraea annularis and Mussismilia hispida, and respiration was measured during exposure to turf and CCA exudates. The oxygen concentrations along the optodes were visualized with a low-cost Submersible Oxygen Optode Recorder (SOOpR) system. With this system we observed that exposure to exudates derived from turf algae stimulated higher oxygen drawdown by the coral-associated bacteria than CCA exudates or seawater controls. Furthermore, in both turf and CCA exudate treatments, all microbial communities (coral-, algae-associated and pelagic) contributed significantly to the observed oxygen drawdown. This suggests that the driving factor for elevated oxygen consumption rates is the source of exudates rather than the initially introduced microbial community. Our results demonstrate that exudates from turf algae may contribute to hypoxia-induced coral stress in two different coral genera as a result of increased biological oxygen demand of the local microbial community. Additionally, the SOOpR system developed here can be applied to measure the BOD of any culturable microbe or microbial community. PMID:23882444

  17. Biological Communities and Geomorphology of Patch Reefs in Biscayne National Park, Florida, U.S.A.

    USGS Publications Warehouse

    Kuffner, Ilsa B.; Brock, John C.; Grober-Dunsmore, Rikki; Hickey, T. Don; Bonito, Victor; Bracone, Jeremy E.; Wright, C. Wayne

    2008-01-01

    Coral reef ecosystem management benefits from continual, quantitative assessment of the resources being managed, plus assessment of factors that affect distribution patterns of organisms in the ecosystem. In this study, we investigated the relationships among physical, benthic, and fish variables in effort to help explain the distribution patterns of ecologically and economically important species on twelve patch reefs within Biscayne National Park (BNP), Florida, U.S.A. We visited 196 randomly-located sampling stations across twelve shallow (< 10m) patch reefs, using SCUBA to conduct our surveys. We measured physical variables (e.g., substratum type), estimated the percent cover of benthic community members (e.g., coral, algae), and counted and estimated mean size for each fish species observed. We also used high-density bathymetric data collected remotely via airborne laser surveying (Experimental Advanced Airborne Research Lidar (EAARL)) to calculate rugosity (bumpiness) of the reef habitat. Here we present our findings visually by graphing our quantitative community and physical structure data simultaneously in a GIS map format. You will see that biological organisms arrange themselves on each patch reef in a non-random manner. For example, many species of fish prefer to locate themselves in areas of the reef where the rugosity index is high. Rugose parts of the reef provide them with good hiding places from predators. These maps (and the data used to create them) are permanent records of the status of reef resources found on these twelve patch reefs in BNP as of September, 2003. The survey data found in the shapefile located on this CD product includes benthic percent cover data for algae, coral, encrusting invertebrates, and substratum type, in addition to gorgonian abundance and volume, total fish abundance and species richness, and specific counts for Acanthurids (surgeonfish), Scarids (parrotfish), Lutjanids (snappers), Haemulids (grunts), Serranids (groupers), and Pomacentrids (damselfish).

  18. Molecular biology research in neuropsychiatry: India’s contribution

    PubMed Central

    Sathyanarayana Rao, T. S.; Ramesh, B. N.; Vasudevaraju, P.; Rao, K. S. J.

    2010-01-01

    Neuropsychiatric disorders represent the second largest cause of morbidity worldwide. These disorders have complex etiology and patho-physiology. The major lacunae in the biology of the psychiatric disorders include genomics, biomarkers and drug discovery, for the early detection of the disease, and have great application in the clinical management of disease. Indian psychiatrists and scientists played a significant role in filling the gaps. The present annotation provides in depth information related to research contributions on the molecular biology research in neuropsychiatric disorders in India. There is a great need for further research in this direction as to understand the genetic association of the neuropsychiatric disorders; molecular biology has a tremendous role to play. The alterations in gene expression are implicated in the pathogenesis of several neuropsychiatric disorders, including drug addiction and depression. The development of transgenic neuropsychiatric animal models is of great thrust areas. No studies from India in this direction. Biomarkers in neuropsychiatric disorders are of great help to the clinicians for the early diagnosis of the disorders. The studies related to gene-environment interactions, DNA instability, oxidative stress are less studied in neuropsychiatric disorders and making efforts in this direction will lead to pioneers in these areas of research in India. In conclusion, we provided an insight for future research direction in molecular understanding of neuropsychiatry disorders. PMID:21836667

  19. The solar system: Importance of research to the biological sciences

    NASA Technical Reports Server (NTRS)

    Klein, Harold P.

    1992-01-01

    An attempt is made to describe the scope of scientific areas that comprise the current field of exobiology in the United States. From investigations of astrophysical phenomena that deal with the birth of stars and planetary systems to questions of molecular biology involving phylogenetic relationships among organisms, from attempts to simulate the synthesis of biological precursor molecules in the chemistry laboratory to making measurements of the organic constituents of Titan's atmosphere, these researches all converge toward a common objective--answering the question of how life came about in the universe.

  20. Biological detoxification research: potential uses for a fungal species

    SciTech Connect

    Glaser, J.A.; Sferra, P.R.

    1987-09-01

    Some of the more-common substructures of lignin, catechol diethers, alkylarenes, and biphenyls, resemble the chemical structure of many persistent organic compounds contaminating the environment. The remarkable similarity in structure led several investigators to research the applicability of a white rot fungus, Phanerochaete chrysosporium, to the biodegradation of hazardous waste constituents. The Hazardous Waste Engineering Research Laboratory of the U.S. Environmental Protection Agency has funded research to determine the feasibility of using P. chrysosporium to degrade organic pollutants. The white rot fungus research continues to stimulate interest and shows promise for field applications. The parts of the research program sponsored by the Hazardous Waste Engineering Research Laboratory are starting to develop major advances in the emerging biological control technology field.

  1. University--Government--International Donor Community Cooperation in Research, Teaching and Community Engagement

    ERIC Educational Resources Information Center

    Mwaniki, M.

    2010-01-01

    World geo-economics of the last two decades have seriously impacted on governments' capability to finance university teaching, research and community engagement, especially in the developing world. Over the same period however, the demands and expectations exerted on universities by government and society have increased phenomenally. To meet these…

  2. NON Community Networks Program Centers (CNPC) and NCI Community Oncology Research Program (NCORP) Projects

    Cancer.gov

    Strengthen the use of evidence-based education, outreach, and dissemination using the Community Guide, as well as partnership and capacity building, to improve knowledge, behavior, attitude, and beliefs with focus on the early detection of breast, cervical, and colorectal cancers, clinical trial and biospecimen research.

  3. Individual-based predator-prey model for biological coevolution: Fluctuations, stability, and community structure

    NASA Astrophysics Data System (ADS)

    Rikvold, Per Arne; Sevim, Volkan

    2007-05-01

    We study an individual-based predator-prey model of biological coevolution, using linear stability analysis and large-scale kinetic Monte Carlo simulations. The model exhibits approximate 1/f noise in diversity and population-size fluctuations, and it generates a sequence of quasisteady communities in the form of simple food webs. These communities are quite resilient toward the loss of one or a few species, which is reflected in different power-law exponents for the durations of communities and the lifetimes of species. The exponent for the former is near -1 , while the latter is close to -2 . Statistical characteristics of the evolving communities, including degree (predator and prey) distributions and proportions of basal, intermediate, and top species, compare reasonably with data for real food webs.

  4. Bacterial community structures of deep-sea water investigated by molecular biological techniques.

    PubMed

    Terahara, Takeshi; Yamada, Katsuhisa; Nakayama, Jiro; Igarashi, Yasuhiro; Kobayashi, Takeshi; Imada, Chiaki

    2016-02-01

    The aim of the present study was to investigate the bacterial community structures of deep-sea water (DSW) and surface seawater (SSW) samples in Japan by molecular biological techniques. DGGE analyses and pyrosequencing analysis revealed that bacterial community structures of DSW were diverse and differed from those of SSW. This is the first report on the horizontal variation of bacterial community structures of DSW throughout Japan. In addition, pyrosequencing analysis revealed that the number of phyla in DSW was larger than that in SSW, and specific phyla, such as Firmicutes and Planctomycetes, were characterized by a higher proportion of the bacterial community structure in DSW than in SSW. Taken together, these results indicate that a variety of bacteria that are specifically adapted to the DSW environments can be expected to be found in DSW, and DSW would thus be a potential resource for novel or unique microorganisms and compounds. PMID:26475936

  5. pClone: Synthetic Biology Tool Makes Promoter Research Accessible to Beginning Biology Students

    PubMed Central

    Eckdahl, Todd; Cronk, Brian; Andresen, Corinne; Frederick, Paul; Huckuntod, Samantha; Shinneman, Claire; Wacker, Annie; Yuan, Jason

    2014-01-01

    The Vision and Change report recommended genuine research experiences for undergraduate biology students. Authentic research improves science education, increases the number of scientifically literate citizens, and encourages students to pursue research. Synthetic biology is well suited for undergraduate research and is a growing area of science. We developed a laboratory module called pClone that empowers students to use advances in molecular cloning methods to discover new promoters for use by synthetic biologists. Our educational goals are consistent with Vision and Change and emphasize core concepts and competencies. pClone is a family of three plasmids that students use to clone a new transcriptional promoter or mutate a canonical promoter and measure promoter activity in Escherichia coli. We also developed the Registry of Functional Promoters, an open-access database of student promoter research results. Using pre- and posttests, we measured significant learning gains among students using pClone in introductory biology and genetics classes. Student posttest scores were significantly better than scores of students who did not use pClone. pClone is an easy and affordable mechanism for large-enrollment labs to meet the high standards of Vision and Change. PMID:26086659

  6. Participatory Action Research: Integrating Community Occupational Therapy Practice and Research.

    ERIC Educational Resources Information Center

    Cockburn, Lynn; Trentham, Barry

    2002-01-01

    Projects involving mental health clients receiving occupational therapy and senior citizens engaged in capacity building illustrate steps in the participatory action research (PAR) process: issue identification and planning; investigation and action; action, reflection, and modification cycles; and knowledge creation and change. Challenges and…

  7. Lessons Learned from the Protección en Construcción Community Research Partnership

    PubMed Central

    Martinez, Linda Sprague; Ndulue, Uchenna J.; Brunette, Maria J.

    2015-01-01

    PenC seeks to build community-university-labor partnership in order to design, implement and evaluate an intervention aimed at preventing falls and silica exposure among Latino construction workers. This study evaluated the PenC partnership process. Semi-structured partner interviews and surveys were used. Thematic, univariate and bivariate analyses were conducted; results were presented back to partners who then provided data context. Although all partners report increased capacity including new connections and knowledge, resident researchers, here promotores, are much more likely to share information with their neighbors and other local residents. Engaging residents can lead to deeper community penetration. PMID:26005517

  8. Community science, philosophy of science, and the practice of research.

    PubMed

    Tebes, Jacob Kraemer

    2005-06-01

    Embedded in community science are implicit theories on the nature of reality (ontology), the justification of knowledge claims (epistemology), and how knowledge is constructed (methodology). These implicit theories influence the conceptualization and practice of research, and open up or constrain its possibilities. The purpose of this paper is to make some of these theories explicit, trace their intellectual history, and propose a shift in the way research in the social and behavioral sciences, and community science in particular, is conceptualized and practiced. After describing the influence and decline of logical empiricism, the underlying philosophical framework for science for the past century, I summarize contemporary views in the philosophy of science that are alternatives to logical empiricism. These include contextualism, normative naturalism, and scientific realism, and propose that a modified version of contextualism, known as perspectivism, affords the philosophical framework for an emerging community science. I then discuss the implications of perspectivism for community science in the form of four propositions to guide the practice of research. PMID:15909796

  9. Experience Developing a Community Pharmacy Practice-based Research Network

    PubMed Central

    Snyder, Margie E.; Frail, Caitlin K.; Seel, Lindsey V.; Hultgren, Kyle E.

    2014-01-01

    In 2010, the Purdue University College of Pharmacy established the Medication Safety Research Network of Indiana (Rx-SafeNet), the first practice-based research network (PBRN) in Indiana comprised solely of community pharmacies. In the development of Rx-SafeNet and through our early project experiences, we identified several “lessons learned.” We share our story and what we learned in an effort to further advance the work of the greater PBRN community. We have formed the infrastructure for Rx-SafeNet, including an Executive Committee, Advisory Board, member pharmacies/site coordinators, and Project Review Team. To date, 22 community pharmacies have joined and we have recently completed data collection for the network's first project. Lessons learned during the development of Rx-SafeNet may benefit PBRNs nationally. Although community pharmacy PBRNs are not yet commonplace in the U.S., we believe their development and subsequent research efforts serve as an important avenue for investigating medication use issues. PMID:25018893

  10. Energy Efficient Community Development in California: Chula Vista Research Project

    SciTech Connect

    Gas Technology Institute

    2009-03-31

    In 2007, the U.S. Department of Energy joined the California Energy Commission in funding a project to begin to examine the technical, economic and institutional (policy and regulatory) aspects of energy-efficient community development. That research project was known as the Chula Vista Research Project for the host California community that co-sponsored the initiative. The researches proved that the strategic integration of the selected and economically viable buildings energy efficiency (EE) measures, photovoltaics (PV), distributed generation (DG), and district cooling can produce significant reductions in aggregate energy consumption, peak demand and emissions, compared to the developer/builder's proposed baseline approach. However, the central power plant emission reductions achieved through use of the EE-DG option would increase local air emissions. The electric and natural gas utility infrastructure impacts associated with the use of the EE and EE-PV options were deemed relatively insignificant while use of the EE-DG option would result in a significant reduction of necessary electric distribution facilities to serve a large-scale development project. The results of the Chula Vista project are detailed in three separate documents: (1) Energy-Efficient Community Development in California; Chula Vista Research Project report contains a detailed description of the research effort and findings. This includes the methodologies, and tools used and the analysis of the efficiency, economic and emissions impacts of alternative energy technology and community design options for two development sites. Research topics covered included: (a) Energy supply, demand, and control technologies and related strategies for structures; (b) Application of locally available renewable energy resources including solar thermal and PV technology and on-site power generation with heat recovery; (c) Integration of local energy resources into district energy systems and existing energy utility networks; (d) Alternative land-use design and development options and their impact on energy efficiency and urban runoff, emissions and the heat island effect; and (e) Alternative transportation and mobility options and their impact on local emissions. (2) Creating Energy-Efficient Communities in California: A Reference Guide to Barriers, Solutions and Resources report provides the results of an effort to identify the most innovative existing and emerging public policy, incentive and market mechanisms that encourage investment in advanced energy technologies and enabling community design options in the State of California and the nation. The report evaluates each of these mechanisms in light of the preceding research and concludes with a set of recommended mechanisms designed for consideration by relevant California State agencies, development and finance industry associations, and municipal governments. (3) Creating Energy-Efficient Communities in California: A Technical Reference Guide to Building and Site Design report contains a set of selected commercially viable energy technology and community design options for high-efficiency, low-impact community development in California. It includes a summary of the research findings referenced above and recommendations for energy technology applications and energy-efficient development strategies for residential, commercial and institutional structures and supporting municipal infrastructure for planned communities. The document also identifies design options, technology applications and development strategies that are applicable to urban infill projects.

  11. Invited Review Article: Advanced light microscopy for biological space research

    NASA Astrophysics Data System (ADS)

    De Vos, Winnok H.; Beghuin, Didier; Schwarz, Christian J.; Jones, David B.; van Loon, Jack J. W. A.; Bereiter-Hahn, Juergen; Stelzer, Ernst H. K.

    2014-10-01

    As commercial space flights have become feasible and long-term extraterrestrial missions are planned, it is imperative that the impact of space travel and the space environment on human physiology be thoroughly characterized. Scrutinizing the effects of potentially detrimental factors such as ionizing radiation and microgravity at the cellular and tissue level demands adequate visualization technology. Advanced light microscopy (ALM) is the leading tool for non-destructive structural and functional investigation of static as well as dynamic biological systems. In recent years, technological developments and advances in photochemistry and genetic engineering have boosted all aspects of resolution, readout and throughput, rendering ALM ideally suited for biological space research. While various microscopy-based studies have addressed cellular response to space-related environmental stressors, biological endpoints have typically been determined only after the mission, leaving an experimental gap that is prone to bias results. An on-board, real-time microscopical monitoring device can bridge this gap. Breadboards and even fully operational microscope setups have been conceived, but they need to be rendered more compact and versatile. Most importantly, they must allow addressing the impact of gravity, or the lack thereof, on physiologically relevant biological systems in space and in ground-based simulations. In order to delineate the essential functionalities for such a system, we have reviewed the pending questions in space science, the relevant biological model systems, and the state-of-the art in ALM. Based on a rigorous trade-off, in which we recognize the relevance of multi-cellular systems and the cellular microenvironment, we propose a compact, but flexible concept for space-related cell biological research that is based on light sheet microscopy.

  12. Invited review article: Advanced light microscopy for biological space research.

    PubMed

    De Vos, Winnok H; Beghuin, Didier; Schwarz, Christian J; Jones, David B; van Loon, Jack J W A; Bereiter-Hahn, Juergen; Stelzer, Ernst H K

    2014-10-01

    As commercial space flights have become feasible and long-term extraterrestrial missions are planned, it is imperative that the impact of space travel and the space environment on human physiology be thoroughly characterized. Scrutinizing the effects of potentially detrimental factors such as ionizing radiation and microgravity at the cellular and tissue level demands adequate visualization technology. Advanced light microscopy (ALM) is the leading tool for non-destructive structural and functional investigation of static as well as dynamic biological systems. In recent years, technological developments and advances in photochemistry and genetic engineering have boosted all aspects of resolution, readout and throughput, rendering ALM ideally suited for biological space research. While various microscopy-based studies have addressed cellular response to space-related environmental stressors, biological endpoints have typically been determined only after the mission, leaving an experimental gap that is prone to bias results. An on-board, real-time microscopical monitoring device can bridge this gap. Breadboards and even fully operational microscope setups have been conceived, but they need to be rendered more compact and versatile. Most importantly, they must allow addressing the impact of gravity, or the lack thereof, on physiologically relevant biological systems in space and in ground-based simulations. In order to delineate the essential functionalities for such a system, we have reviewed the pending questions in space science, the relevant biological model systems, and the state-of-the art in ALM. Based on a rigorous trade-off, in which we recognize the relevance of multi-cellular systems and the cellular microenvironment, we propose a compact, but flexible concept for space-related cell biological research that is based on light sheet microscopy. PMID:25362364

  13. Invited Review Article: Advanced light microscopy for biological space research

    SciTech Connect

    De Vos, Winnok H.; Beghuin, Didier; Schwarz, Christian J.; Jones, David B.; Loon, Jack J. W. A. van

    2014-10-15

    As commercial space flights have become feasible and long-term extraterrestrial missions are planned, it is imperative that the impact of space travel and the space environment on human physiology be thoroughly characterized. Scrutinizing the effects of potentially detrimental factors such as ionizing radiation and microgravity at the cellular and tissue level demands adequate visualization technology. Advanced light microscopy (ALM) is the leading tool for non-destructive structural and functional investigation of static as well as dynamic biological systems. In recent years, technological developments and advances in photochemistry and genetic engineering have boosted all aspects of resolution, readout and throughput, rendering ALM ideally suited for biological space research. While various microscopy-based studies have addressed cellular response to space-related environmental stressors, biological endpoints have typically been determined only after the mission, leaving an experimental gap that is prone to bias results. An on-board, real-time microscopical monitoring device can bridge this gap. Breadboards and even fully operational microscope setups have been conceived, but they need to be rendered more compact and versatile. Most importantly, they must allow addressing the impact of gravity, or the lack thereof, on physiologically relevant biological systems in space and in ground-based simulations. In order to delineate the essential functionalities for such a system, we have reviewed the pending questions in space science, the relevant biological model systems, and the state-of-the art in ALM. Based on a rigorous trade-off, in which we recognize the relevance of multi-cellular systems and the cellular microenvironment, we propose a compact, but flexible concept for space-related cell biological research that is based on light sheet microscopy.

  14. Community-Based Participatory Research in Indian Country: Improving Health through Water Quality Research and Awareness

    PubMed Central

    Cummins, C.; Doyle, J.; Kindness, L.; Lefthand, M.J.; Bear Don't Walk, U.J.; Bends, A.; Broadaway, S.C.; Camper, A.K.; Fitch, R.; Ford, T.E.; Hamner, S.; Morrison, A.R.; Richards, C.L.; Young, S.L.; Eggers, M.J.

    2011-01-01

    Water has always been held in high respect by the Apsaálooke (Crow) people of Montana. Tribal members questioned the health of the rivers and well water due to visible water quality deterioration and potential connections to illnesses in the community. Community members initiated collaboration among local organizations, the Tribe and academic partners, resulting in genuine community based participatory research. The article shares what we have learned as tribal members and researchers about working together to examine surface and groundwater contaminants, assess routes of exposure and use our data to bring about improved health of our people and our waters. PMID:20531097

  15. Visual Methodologies in Community-Based Participatory Research for Health: Using Photography, Video, and New Media to Engage Communities in Research and Action

    ERIC Educational Resources Information Center

    Catalani, Caricia Eleanora Celebes

    2009-01-01

    The challenges facing public health today are too vast, complex, and urgent to be met by public health professionals alone. To improve the health and wellbeing of diverse communities around the globe, public health leaders are developing tools that engage communities in research and action, most particularly community-based participatory research

  16. The Colorado Plateau: cultural, biological, and physical research

    USGS Publications Warehouse

    Cole, Kenneth L.

    2004-01-01

    Stretching from the four corners of Arizona, New Mexico, Colorado, and Utah, the Colorado Plateau is a natural laboratory for a wide range of studies. This volume presents 23 original articles drawn from more than 100 research projects presented at the Sixth Biennial Conference of Research on the Colorado Plateau. This scientific gathering revolved around research, inventory, and monitoring of lands in the region. The book's contents cover management techniques for cultural, biological, and physical resources, representing collaborative efforts among federal, university, and private sector scientists and land managers. Chapters on cultural concerns cover benchmarks of modern southwestern anthropological knowledge, models of past human activity and impact of modern visitation at newly established national monuments, challenges in implementing the 1964 Wilderness Act, and opportunities for increased federal research on Native American lands. The section on biological resources comprises sixteen chapters, with coverage that ranges from mammalian biogeography to responses of elk at the urban-wildland interface. Additional biological studies include the effects of fire and grazing on vegetation; research on bald eagles at Grand Canyon and tracking wild turkeys using radio collars; and management of palentological resources. Two final chapters on physical resources consider a proposed rerouting of the Rio de Flag River in urban Flagstaff, Arizona, and an examination of past climate patterns over the Plateau, using stream flow records and tree ring data. In light of similarities in habitat and climate across the Colorado Plateau, techniques useful to particular management units have been found to be applicable in many locations. This volume highlights an abundance of research that will prove useful for all of those working in the region, as well as for others seeking comparative studies that integrate research into land management actions.

  17. Community Priority Index: Utility, Applicability and Validation for Priority Setting in Community-Based Participatory Research

    PubMed Central

    Salihu, Hamisu M.; Salinas-Miranda, Abraham A.; Wang, Wei; Turner, DeAnne; Berry, Estrellita Lo; Zoorob, Roger

    2015-01-01

    Background Providing practitioners with an intuitive measure for priority setting that can be combined with diverse data collection methods is a necessary step to foster accountability of the decision-making process in community settings. Yet, there is a lack of easy-to-use, but methodologically robust measures, that can be feasibly implemented for reliable decision-making in community settings. To address this important gap in community based participatory research (CBPR), the purpose of this study was to demonstrate the utility, applicability, and validation of a community priority index in a community-based participatory research setting. Design and Methods Mixed-method study that combined focus groups findings, nominal group technique with six key informants, and the generation of a Community Priority Index (CPI) that integrated community importance, changeability, and target populations. Bootstrapping and simulation were performed for validation. Results For pregnant mothers, the top three highly important and highly changeable priorities were: stress (CPI=0.85; 95%CI: 0.70, 1.00), lack of affection (CPI=0.87; 95%CI: 0.69, 1.00), and nutritional issues (CPI=0.78; 95%CI: 0.48, 1.00). For non-pregnant women, top priorities were: low health literacy (CPI=0.87; 95%CI: 0.69, 1.00), low educational attainment (CPI=0.78; 95%CI: 0.48, 1.00), and lack of self-esteem (CPI=0.72; 95%CI: 0.44, 1.00). For children and adolescents, the top three priorities were: obesity (CPI=0.88; 95%CI: 0.69, 1.00), low self-esteem (CPI=0.81; 95%CI: 0.69, 0.94), and negative attitudes toward education (CPI=0.75; 95%CI: 0.50, 0.94). Conclusions This study demonstrates the applicability of the CPI as a simple and intuitive measure for priority setting in CBPR. Significance for public health Community-based participatory research (CBPR) has been credited to be a promising approach for the reduction of health disparities and as an effective way to create sustainable community outcomes. Priority setting is an essential decision-making step in community-based participatory research. Issue prioritization must be driven not just by the importance of the issue, but also what realistically can be changed with available funds. However, there is little guidance on how to approach priority setting with objective and subjective measures while implementing CBPR. This study depicts the invention of a Community Priority Index (CPI), which can be used to prioritize community health issues by combining subjective and objective markers into a single measure. The CPI shown in this study represents a viable systematic approach to improve the objectivity and reliability of community-based decision-making. PMID:26425490

  18. Division of Biological and Medical Research research summary 1984-1985

    SciTech Connect

    Barr, S.H.

    1985-08-01

    The Division of Biological and Medical Research at Argonne National Laboratory conducts multidisciplinary research aimed at defining the biological and medical hazards to man from energy technologies and new energy options. These technically oriented studies have a strong base in fundamental research in a variety of scientific disciplines, including molecular and cellular biology, biophysics, genetics, radiobiology, pharmacology, biochemistry, chemistry, environmental toxicology, and epidemiology. This research summary is organized into six parts. The first five parts reflect the Divisional structure and contain the scientific program chapters, which summarize the activities of the individual groups during the calendar year 1984 and the first half of 1985. To provide better continuity and perspective, previous work is sometimes briefly described. Although the summaries are short, efforts have been made to indicate the range of research activities for each group.

  19. Facilities for Biological Research Aboard the International Space Station

    NASA Technical Reports Server (NTRS)

    Souza, Kenneth A.; Yost, Bruce D.; Berry, William E.; Johnson, Catherine C.

    1996-01-01

    A centrifuge designed as part of an integrated biological facility for installation onboard the International Space Station is presented. The requirements for the 2.5 m diameter centrifuge, which is designed for the support of biological experiments are discussed. The scientific objectives of the facility are to: provide a means of conducting fundamental studies in which gravitational acceleration is a controllable variable; provide a 1g control; determine the threshold acceleration for physiological response, and determine the value of centrifugation as a potential countermeasure for the biomedical problems associated with space flight. The implementation of the facility is reported on, and the following aspects of the facility are described: the host resources systems supply requirements such as power and data control; the habitat holding rack; the life sciences glove box; the centrifuge; the different habitats for cell culture, aquatic studies, plant research and insect research; the egg incubator, and the laboratory support equipment.

  20. Governing through community-based research: lessons from the Canadian HIV research sector.

    PubMed

    Guta, Adrian; Strike, Carol; Flicker, Sarah; Murray, Stuart J; Upshur, Ross; Myers, Ted

    2014-12-01

    The "general public" and specific "communities" are increasingly being integrated into scientific decision-making. This shift emphasizes "scientific citizenship" and collaboration between interdisciplinary scientists, lay people, and multi-sector stakeholders (universities, healthcare, and government). The objective of this paper is to problematize these developments through a theoretically informed reading of empirical data that describes the consequences of bringing together actors in the Canadian HIV community-based research (CBR) movement. Drawing on Foucauldian "governmentality" the complex inner workings of the impetus to conduct collaborative research are explored. The analysis offered surfaces the ways in which a formalized approach to CBR, as promoted through state funding mechanisms, determines the structure and limits of engagement while simultaneously reinforcing the need for finer grained knowledge about marginalized communities. Here, discourses about risk merge with notions of "scientific citizenship" to implicate both researchers and communities in a process of governance. PMID:25074512

  1. COMMUNITY-BASED PARTICIPATORY RESEARCH: BENEFITS AND CHALLENGES IN THE HOLLANDALE FIT FOR LIFE STEPS PROGRAM

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Hollandale Fit for Life Steps, a 6-month community intervention involving volunteer “coaches” leading fellow community members in walking groups, utilizes the community-based participatory research model (CBPR). CBPR may improve community interventions by empowering community members to be active pa...

  2. Space Station Freedom: a unique laboratory for gravitational biology research

    NASA Technical Reports Server (NTRS)

    Phillips, R. W.; Cowing, K. L.

    1993-01-01

    The advent of Space Station Freedom (SSF) will provide a permanent laboratory in space with unparalleled opportunities to perform biological research. As with any spacecraft there will also be limitations. It is our intent to describe this space laboratory and present a picture of how scientists will conduct research in this unique environment we call space. SSF is an international venture which will continue to serve as a model for other peaceful international efforts. It is hoped that as the human race moves out from this planet back to the moon and then on to Mars that SSF can serve as a successful example of how things can and should be done.

  3. Biological and chemical technologies research. FY 1995 annual summary report

    SciTech Connect

    1996-03-01

    The annual summary report presents the fiscal year (FY) 1995 research activities and accomplishments for the United States Department of Energy (DOE) Biological and Chemical Technologies Research (BCTR) Program. This BCTR program resides within the Office of Industrial Technologies (OIT) of the Office of Energy Efficiency and Renewable Energy (EE). The annual summary report for 1995 (ASR 95) contains the following: program description (including BCTR program mission statement, historical background, relevance, goals and objectives); program structure and organization, selected technical and programmatic highlights for 1995; detailed descriptions of individual projects; a listing of program output, including a bibliography of published work; patents; and awards arising from work supported by the BCTR.

  4. Division of Biological and Medical Research annual technical report, 1981

    SciTech Connect

    Rosenthal, M.W.

    1982-06-01

    This report summarizes research during 1981 in the Division of Biological and Medical Research, Argonne National Laboratory. Studies in Low Level Radiation include comparison of lifetime effects in mice of low level neutron and gamma irradiation, delineation of the responses of dogs to continuous low level gamma irradiation, elucidation of mechanisms of radiation damage and repair in mammalian cells, and study of the genetic effects of high LET radiations. Carcinogenesis research addresses mechanisms of tumor initiation and promotion in rat liver, chemical carcinogenesis in cultured mammalian cells, and molecular and genetic mechanisms of chemical and ultraviolet mutagenesis in bacteria. Research in Toxicology uses a variety of cellular, whole animal, and chronobiological end points, chemical separations, and statistical models to evaluate the hazards and mechanisms of actions of metals, coal gasification by products, and other energy-related pollutants. Human Protein Index studies develop two-dimensional electrophoresis systems for diagnosis and detection of cancer and other disease. Biophysics research includes fundamental structural and biophysical investigations of immunoglobulins and key biological molecules using NMR, crystallographic, and x-ray and neutron small-angle scattering techniques. The final sections cover support facilities, educational activities, seminars, staff talks, staff, and funding agencies.

  5. Climate change and physical disturbance cause similar community shifts in biological soil crusts.

    PubMed

    Ferrenberg, Scott; Reed, Sasha C; Belnap, Jayne

    2015-09-29

    Biological soil crusts (biocrusts)-communities of mosses, lichens, cyanobacteria, and heterotrophs living at the soil surface-are fundamental components of drylands worldwide, and destruction of biocrusts dramatically alters biogeochemical processes, hydrology, surface energy balance, and vegetation cover. Although there has been long-standing concern over impacts of physical disturbances on biocrusts (e.g., trampling by livestock, damage from vehicles), there is increasing concern over the potential for climate change to alter biocrust community structure. Using long-term data from the Colorado Plateau, we examined the effects of 10 y of experimental warming and altered precipitation (in full-factorial design) on biocrust communities and compared the effects of altered climate with those of long-term physical disturbance (>10 y of replicated human trampling). Surprisingly, altered climate and physical disturbance treatments had similar effects on biocrust community structure. Warming, altered precipitation frequency [an increase of small (1.2 mm) summer rainfall events], and physical disturbance from trampling all promoted early successional community states marked by dramatic declines in moss cover and increases in cyanobacteria cover, with more variable effects on lichens. Although the pace of community change varied significantly among treatments, our results suggest that multiple aspects of climate change will affect biocrusts to the same degree as physical disturbance. This is particularly disconcerting in the context of warming, as temperatures for drylands are projected to increase beyond those imposed as treatments in our study. PMID:26371310

  6. Climate change and physical disturbance cause similar community shifts in biological soil crusts

    USGS Publications Warehouse

    Ferrenberg, Scott; Reed, Sasha C.; Belnap, Jayne

    2015-01-01

    Biological soil crusts (biocrusts)—communities of mosses, lichens, cyanobacteria, and heterotrophs living at the soil surface—are fundamental components of drylands worldwide, and destruction of biocrusts dramatically alters biogeochemical processes, hydrology, surface energy balance, and vegetation cover. While there has been long-standing concern over impacts of 5 physical disturbances on biocrusts (e.g., trampling by livestock, damage from vehicles), there is also increasing concern over the potential for climate change to alter biocrust community structure. Using long-term data from the Colorado Plateau, USA, we examined the effects of 10 years of experimental warming and altered precipitation (in full-factorial design) on biocrust communities, and compared the effects of altered climate with those of long-term physical 10 disturbance (>10 years of replicated human trampling). Surprisingly, altered climate and physical disturbance treatments had similar effects on biocrust community structure. Warming, altered precipitation frequency [an increase of small (1.2 mm) summer rainfall events], and physical disturbance from trampling all promoted early successional community states marked by dramatic declines in moss cover and increased cyanobacteria cover, with more variable effects 15 on lichens. While the pace of community change varied significantly among treatments, our results suggest that multiple aspects of climate change will affect biocrusts to the same degree as physical disturbance. This is particularly disconcerting in the context of warming, as temperatures for drylands are projected to increase beyond those imposed by the climate treatments used in our study.

  7. Are Research Ethics Committees Prepared for Community-Based Participatory Research?

    PubMed

    Tamariz, Leonardo; Medina, Heidy; Taylor, Janielle; Carrasquillo, Olveen; Kobetz, Erin; Palacio, Ana

    2015-12-01

    Community-based participatory research (CBPR) is challenging to research ethics committees (RECs). We reviewed the REC preparedness when reviewing CBPR projects. We searched the MEDLINE database and included qualitative studies of CBPR researchers or REC members about their experiences with RECs. The search yielded 107 studies, of which 10 met our criteria. Barriers were that the community is not prepared to conduct research, the reluctance of RECs to work outside the university, the difficulty RECs have understanding CBPR, and that REC forms evaluate individual rather than community risk. Facilitators were having a CBPR expert as an REC member and educating RECs. Therefore, RECs are not prepared to evaluate CBPR projects leading to unnecessary delays in the approval process. PMID:26527370

  8. A Systems Biology Approach to Infectious Disease Research: Innovating the Pathogen-Host Research Paradigm

    SciTech Connect

    Aderem, Alan; Adkins, Joshua N.; Ansong, Charles; Galagan, James; Kaiser, Shari; Korth, Marcus J.; Law, G. L.; McDermott, Jason E.; Proll, Sean; Rosenberger, Carrie; Schoolnik, Gary; Katze, Michael G.

    2011-02-01

    The 20th century was marked by extraordinary advances in our understanding of microbes and infectious disease, but pandemics remain, food and water borne illnesses are frequent, multi-drug resistant microbes are on the rise, and the needed drugs and vaccines have not been developed. The scientific approaches of the past—including the intense focus on individual genes and proteins typical of molecular biology—have not been sufficient to address these challenges. The first decade of the 21st century has seen remarkable innovations in technology and computational methods. These new tools provide nearly comprehensive views of complex biological systems and can provide a correspondingly deeper understanding of pathogen-host interactions. To take full advantage of these innovations, the National Institute of Allergy and Infectious Diseases recently initiated the Systems Biology Program for Infectious Disease Research. As participants of the Systems Biology Program we think that the time is at hand to redefine the pathogen-host research paradigm.

  9. CUR: Creating Undergraduate Research Opportunities in Changing Communities

    NASA Astrophysics Data System (ADS)

    Halstead, Judith A.

    1998-04-01

    "Creating Undergraduate Research Opportunities in Changing Communities" will be the theme of the Council on Undergraduate Research (CUR) Seventh National Conference to be held at Occidental College in Los Angeles, California, June 25-27, 1998. The CUR biennial National Conferences provide support and networking opportunities for faculty and administrators from predominately undergraduate institutions. In addition, there are opportunities for interaction with representatives from public and private funding agencies, industry, and the K-12 community. Anyone interested in undertaking or promoting undergraduate research is encouraged to attend. CUR conferences provide the opportunity for faculty members involved in undergraduate research to meet face-to-face with colleagues with similar priorities, commitments, and challenges. Deans and other college administrators will also have the opportunity for the exchange of ideas and information pertaining to issues affecting undergraduate research and science education. The three-day conference includes dozens of interactive workshops, plenary sessions, guest speakers, and poster sessions. This is the first CUR National Conference to be held on the West Coast.

  10. Division of Biological and Medical Research annual technical report 1982

    SciTech Connect

    Rosenthal, M.W.

    1983-05-01

    This report summarizes research during 1982 in the Division of Biological and Medical Research, Argonne National Laboratory. Studies in Carcinogenesis address mechanisms of chemical and radiation carcinogenesis including the processes of tumor initiation and promotion. The studies employ rat liver and mouse skin models as well as human rodent cell culture systems. The use of liposomes for metal mobilization is also explored. Low Level Radiation studies include delineation of the hematopoietic and other responses of dogs to continuous low level gamma irradiation, comparison of lifetime effects in mice of low level neutron and gamma irradiation, and study of the genetic effects of high LET radiation. Molecular Biology research develops two-dimensional electrophoresis systems for diagnosis and detection of cancer and other diseases. Fundamental structural and biophysical investigations of immunoglobulins and other key proteins are included, as are studies of cell growth, and of molecular and cellular effects of solar uv light. Research in Toxicology uses cellular, physiological, whole animal, and chronobiological end points and chemical separations to elucidate mechanisms and evaluate hazards of coal conversion by-products, actinides, and toxic metals. The final sections cover support facilities, educational activities, seminars, staff talks, staff, and funding agencies.

  11. Integrated omics for the identification of key functionalities in biological wastewater treatment microbial communities

    PubMed Central

    Narayanasamy, Shaman; Muller, Emilie E L; Sheik, Abdul R; Wilmes, Paul

    2015-01-01

    Biological wastewater treatment plants harbour diverse and complex microbial communities which prominently serve as models for microbial ecology and mixed culture biotechnological processes. Integrated omic analyses (combined metagenomics, metatranscriptomics, metaproteomics and metabolomics) are currently gaining momentum towards providing enhanced understanding of community structure, function and dynamics in situ as well as offering the potential to discover novel biological functionalities within the framework of Eco-Systems Biology. The integration of information from genome to metabolome allows the establishment of associations between genetic potential and final phenotype, a feature not realizable by only considering single ‘omes’. Therefore, in our opinion, integrated omics will become the future standard for large-scale characterization of microbial consortia including those underpinning biological wastewater treatment processes. Systematically obtained time and space-resolved omic datasets will allow deconvolution of structure–function relationships by identifying key members and functions. Such knowledge will form the foundation for discovering novel genes on a much larger scale compared with previous efforts. In general, these insights will allow us to optimize microbial biotechnological processes either through better control of mixed culture processes or by use of more efficient enzymes in bioengineering applications. PMID:25678254

  12. Impact of substratum surface on microbial community structure and treatment performance in biological aerated filters.

    PubMed

    Kim, Lavane; Pagaling, Eulyn; Zuo, Yi Y; Yan, Tao

    2014-01-01

    The impact of substratum surface property change on biofilm community structure was investigated using laboratory biological aerated filter (BAF) reactors and molecular microbial community analysis. Two substratum surfaces that differed in surface properties were created via surface coating and used to develop biofilms in test (modified surface) and control (original surface) BAF reactors. Microbial community analysis by 16S rRNA gene-based PCR-denaturing gradient gel electrophoresis (DGGE) showed that the surface property change consistently resulted in distinct profiles of microbial populations during replicate reactor start-ups. Pyrosequencing of the bar-coded 16S rRNA gene amplicons surveyed more than 90% of the microbial diversity in the microbial communities and identified 72 unique bacterial species within 19 bacterial orders. Among the 19 orders of bacteria detected, Burkholderiales and Rhodocyclales of the Betaproteobacteria class were numerically dominant and accounted for 90.5 to 97.4% of the sequence reads, and their relative abundances in the test and control BAF reactors were different in consistent patterns during the two reactor start-ups. Three of the five dominant bacterial species also showed consistent relative abundance changes between the test and control BAF reactors. The different biofilm microbial communities led to different treatment efficiencies, with consistently higher total organic carbon (TOC) removal in the test reactor than in the control reactor. Further understanding of how surface properties affect biofilm microbial communities and functional performance would enable the rational design of new generations of substrata for the improvement of biofilm-based biological treatment processes. PMID:24141134

  13. Impact of Substratum Surface on Microbial Community Structure and Treatment Performance in Biological Aerated Filters

    PubMed Central

    Kim, Lavane; Pagaling, Eulyn; Zuo, Yi Y.

    2014-01-01

    The impact of substratum surface property change on biofilm community structure was investigated using laboratory biological aerated filter (BAF) reactors and molecular microbial community analysis. Two substratum surfaces that differed in surface properties were created via surface coating and used to develop biofilms in test (modified surface) and control (original surface) BAF reactors. Microbial community analysis by 16S rRNA gene-based PCR-denaturing gradient gel electrophoresis (DGGE) showed that the surface property change consistently resulted in distinct profiles of microbial populations during replicate reactor start-ups. Pyrosequencing of the bar-coded 16S rRNA gene amplicons surveyed more than 90% of the microbial diversity in the microbial communities and identified 72 unique bacterial species within 19 bacterial orders. Among the 19 orders of bacteria detected, Burkholderiales and Rhodocyclales of the Betaproteobacteria class were numerically dominant and accounted for 90.5 to 97.4% of the sequence reads, and their relative abundances in the test and control BAF reactors were different in consistent patterns during the two reactor start-ups. Three of the five dominant bacterial species also showed consistent relative abundance changes between the test and control BAF reactors. The different biofilm microbial communities led to different treatment efficiencies, with consistently higher total organic carbon (TOC) removal in the test reactor than in the control reactor. Further understanding of how surface properties affect biofilm microbial communities and functional performance would enable the rational design of new generations of substrata for the improvement of biofilm-based biological treatment processes. PMID:24141134

  14. Use of CAM in local African-American communities: community-partnered research.

    PubMed Central

    Barnett, Marina C.; Cotroneo, Margaret; Purnell, Joseph; Martin, Danielle; Mackenzie, Elizabeth; Fishman, Alfred

    2003-01-01

    Although previous national surveys have shown an increase in the use of complementary and alternative medicine (CAM) in the U.S. population, racial and ethnic minority populations were under-represented in these surveys. As a result, a profile of the CAM user as white, female, affluent, middle-aged and well educated has emerged. Representing the mainstream population, these previous studies did not take into account the racial and ethnic minority populations who may have their own healing traditions and who may hold different beliefs, use different terminology, and have unique patterns of CAM use. In partnership with community-based organizations and community residents, a culturally sensitive survey instrument and protocols were designed and tested to gather data on lower income, urban African-Americans' use of, attitudes toward, and understanding of CAM. The major findings of this pilot research are 1.) Community-partnered research can help researchers gain access to sensitive data and design culturally appropriate studies; 2.) CAM terminology varies by cultural group; 3.) Certain forms of CAM (folk or family practices) are commonly found in African-American populations; and 4.) Factors that affect CAM use--including age, lack of access to conventional medicine, cultural heritage, and dissatisfaction with conventional medicine. PMID:14620706

  15. Biological Mass Spectrometry and Shotgun Proteomics of Microbial Systems: Methods for studying microbial physiology from isolates to environmental communities

    SciTech Connect

    Dill, Brian; Young, Jacque C; Carey, Patricia A; Verberkmoes, Nathan C

    2010-01-01

    Microbial ecology is currently experiencing a renaissance spurred by the rapid development of molecular techniques and omics technologies in particular. As never before, these tools have allowed researchers in the field to produce a massive amount of information through in situ measurements and analysis of natural microbial communities, both vital approaches to the goal of unraveling the interactions of microbes with their environment and with one another. While genomics can provide information regarding the genetic potential of microbes, proteomics characterizes the primary end-stage product, proteins, thus conveying functional information concerning microbial activity. Advances in mass spectrometry instrumentation and methodologies, along with bioinformatic approaches, have brought this analytic chemistry technique to relevance in the biological realm due to its powerful applications in proteomics. Mass spectrometry-enabled proteomics, including bottom-up and top-down approaches, is capable of supplying a wealth of biologically-relevant information, from simple protein cataloging of the proteome of a microbial community to identifying post-translational modifications of individual proteins.

  16. Environmental Research Translation: Enhancing Interactions with Communities at Contaminated Sites

    PubMed Central

    Ramirez-Andreotta, Monica D.; Brusseau, Mark L.; Artiola, Janick F.; Maier, Raina M.; Gandolfi, A. Jay

    2014-01-01

    The characterization and remediation of contaminated sites are complex endeavors fraught with numerous challenges. One particular challenge that is receiving increased attention is the development and encouragement of full participation by communities and community members affected by a given site in all facets of decision-making. Many disciplines have been grappling with the challenges associated with environmental and risk communication, public participation in environmental data generation, and decision-making and increasing community capacity. The concepts and methods developed by these disciplines are reviewed, with a focus on their relevance to the specific dynamics associated with environmental contamination sites. The contributions of these disciplines are then synthesized and integrated to help develop Environmental Research Translation (ERT), a proposed framework for environmental scientists to promote interaction and communication among involved parties at contaminated sites. This holistic approach is rooted in public participation approaches to science, which includes: a transdisciplinary team, effective collaboration, information transfer, public participation in environmental projects, and a cultural model of risk communication. Although there are challenges associated with the implementation of ERT, it is anticipated that application of this proposed translational science method could promote more robust community participation at contaminated sites. PMID:25173762

  17. Integrating -Omics: Systems Biology as Explored Through C. elegans Research.

    PubMed

    Van Assche, Roel; Broeckx, Valérie; Boonen, Kurt; Maes, Evelyne; De Haes, Wouter; Schoofs, Liliane; Temmerman, Liesbet

    2015-10-23

    -Omics data have become indispensable to systems biology, which aims to describe the full complexity of functional cells, tissues, organs and organisms. Generating vast amounts of data via such methods, researchers have invested in ways of handling and interpreting these. From the large volumes of -omics data that have been gathered over the years, it is clear that the information derived from one -ome is usually far from complete. Now, individual techniques and methods for integration are maturing to the point that researchers can focus on network-based integration rather than simply interpreting single -ome studies. This review evaluates the application of integrated -omics approaches with a focus on Caenorhabditis elegans studies, intending to direct researchers in this field to useful databases and inspiring examples. PMID:25839106

  18. Community-based participatory research in complex settings: clean mind-dirty hands.

    PubMed

    Makhoul, Jihad; Nakkash, Rima; Harpham, Trudy; Qutteina, Yara

    2014-09-01

    Despite the abundance of the literature which discusses factors supporting or inhibiting effective participation of community members in community-based research, there is a paucity of publications analysing challenges to participation in complex settings. This manuscript describes an intervention built on researcher-community partnership amid complex social conditions which challenged participation of community members at different stages of the research process. The research took place in a Palestinian refugee camp in Beirut, Lebanon and 1 of 12 in Lebanon which suffer from deteriorating social, economic and physical conditions perpetuated by state-imposed restrictions. The research team developed a community coalition which was involved in all stages of planning, designing, implementation and dissemination. In all those stages the aim was to maintain rigorous research, to follow a 'clean mind' approach to research, but maintain principles of community participation which necessitate 'a dirty hand'. Despite commitment to the principles of community-based participatory research, participation of community members (including youth, parents and teachers) was affected to a great extent by the social, physical and structural conditions of the community context. Characteristics of the context where research is conducted and how it affects community members should not be overlooked since multiple factors beyond the researchers' control could interfere with the rigour of scientific research. Researchers need to develop a plan for participation with the community from the beginning with an understanding of the community forces that affect meaningful participation and address possible deterrence. PMID:23872385

  19. Opportunities and Pitfalls of Community-Based Research: A Case Study.

    ERIC Educational Resources Information Center

    Polanyi, Michael; Cockburn, Lynn

    2003-01-01

    Based on a recent community-based research project with injured workers, identifies challenges faced when academics engage in community-based research based at a university, including dealing with the constraints and requirements of academic research funding, bridging the goals of academics and community members, and functioning within the…

  20. About the Community Oncology and Prevention Trials Research Group | Division of Cancer Prevention

    Cancer.gov

    The Community Oncology and Prevention Trials Research Group supports clinical oncology trials in cancer prevention and control in community settings. The group also supports investigator-initiated research projects in supportive, palliative and end-of-life care, and coordinates clinical oncology research projects with other NCI programs to be done in the community setting.

  1. Characterizing the Use of Research-Community Partnerships in Studies of Evidence-Based Interventions in Children's Community Services

    ERIC Educational Resources Information Center

    Frazee-Brookman, Lauren; Stahmer, Aubyn; Stadnick, Nicole; Chlebowski, Colby; Herschel, Amy; Garland, Ann F.

    2015-01-01

    This study characterized the use of research community partnerships (RCPs) to tailor evidence-based intervention, training, and implementation models for delivery across different childhood problems and service contexts using a survey completed by project principal investigators and community partners. To build on previous RCP research and to…

  2. The Oregon migrant farmworker community: an evolving model for participatory research.

    PubMed Central

    McCauley, L A; Beltran, M; Phillips, J; Lasarev, M; Sticker, D

    2001-01-01

    Migrant farmworker communities present distinct challenges that require new approaches for community participation in research. In the State of Oregon an agency that advocates for the migrant farmworker community has collaborated successfully with university researchers to implement a research program directed to reducing pesticide exposures among the children of migrant farmworkers. The research process has included both qualitative research methods with members of the community and quantitative approaches to measure pesticide dust residues in homes, biomarkers of pesticide exposure, and effects on health. A committee of university and community stakeholders advises the research. Evaluative processes have been initiated to assess the effectiveness of the participatory model used in this project. The components of the preliminary process evaluation and results are presented. Evaluative data show that researchers and community members differ on perceptions of community involvement and the extent to which communication problems have been resolved between the two groups. Suggestions for improved community involvement and communication are given. PMID:11427395

  3. Community-driven development for computational biology at Sprints, Hackathons and Codefests

    PubMed Central

    2014-01-01

    Background Computational biology comprises a wide range of technologies and approaches. Multiple technologies can be combined to create more powerful workflows if the individuals contributing the data or providing tools for its interpretation can find mutual understanding and consensus. Much conversation and joint investigation are required in order to identify and implement the best approaches. Traditionally, scientific conferences feature talks presenting novel technologies or insights, followed up by informal discussions during coffee breaks. In multi-institution collaborations, in order to reach agreement on implementation details or to transfer deeper insights in a technology and practical skills, a representative of one group typically visits the other. However, this does not scale well when the number of technologies or research groups is large. Conferences have responded to this issue by introducing Birds-of-a-Feather (BoF) sessions, which offer an opportunity for individuals with common interests to intensify their interaction. However, parallel BoF sessions often make it hard for participants to join multiple BoFs and find common ground between the different technologies, and BoFs are generally too short to allow time for participants to program together. Results This report summarises our experience with computational biology Codefests, Hackathons and Sprints, which are interactive developer meetings. They are structured to reduce the limitations of traditional scientific meetings described above by strengthening the interaction among peers and letting the participants determine the schedule and topics. These meetings are commonly run as loosely scheduled "unconferences" (self-organized identification of participants and topics for meetings) over at least two days, with early introductory talks to welcome and organize contributors, followed by intensive collaborative coding sessions. We summarise some prominent achievements of those meetings and describe differences in how these are organised, how their audience is addressed, and their outreach to their respective communities. Conclusions Hackathons, Codefests and Sprints share a stimulating atmosphere that encourages participants to jointly brainstorm and tackle problems of shared interest in a self-driven proactive environment, as well as providing an opportunity for new participants to get involved in collaborative projects. PMID:25472764

  4. Interfacing mathematics and biology: a discussion on training, research, collaboration, and funding.

    PubMed

    Miller, Laura A; Alben, Silas

    2012-11-01

    This article summarizes the discussion at a workshop on "Working at the Interface of Mathematics and Biology" at the 2012 Annual Meeting of the Society for Integrative and Comparative Biology. The goal of this workshop was to foster an ongoing discussion by the community on how to effectively train students from the biological, physical, engineering, and mathematical sciences to work at the intersection of these fields. One major point of discussion centered on how to be a successful interdisciplinary researcher in terms of where to publish, how to successfully write grants, and how to navigate evaluations for tenure and promotion. An emphasis was placed on the importance of developing strong multidisciplinary collaborations and clearly defining one's career trajectory to the home discipline. Another focus of the discussion was on the training of students and postdoctoral fellows in interdisciplinary work and helping these junior researchers to launch their careers. The group emphasized the need for the development of publicly available resources for biologists to learn basic tools for mathematical modeling and for mathematicians and engineers to see how their fields may be applied to current topics in the life sciences. PMID:22730496

  5. Cambridge Healthtech Institute's Fourth Annual In silico Biology Conference "Modeling Systems Biology for Research and Target Prioritization"

    SciTech Connect

    Forst, C.

    2002-01-01

    In silico biology, the computer aided analysis of biological systems, is a relatively young research area. It first has been coined in the late 1990's and emerged from Theoretical and Computational Biology. As in other fields before, biology experiences an increased use of systems mathematics and computer simulation. With the human genome sequence available, with an exponentially growing number of completely sequenced genomes from various model organisms and with expression and proteomic data at hand, the research paradigm is shifted towards systems analysis and simulation. Computer aided modeling of complex biomolecules and assemblies are already routinely performed. Nowadays, theoretical description and computer simulation of cellular components in larger intra- and inter-cellular networks is of growing importance. Together with classic biological and clinical experiments as well as data from functional genomics, in silico biology will take the leading role in the analysis of biological systems.

  6. An eQTL biological data visualization challenge and approaches from the visualization community

    PubMed Central

    2012-01-01

    In 2011, the IEEE VisWeek conferences inaugurated a symposium on Biological Data Visualization. Like other domain-oriented Vis symposia, this symposium's purpose was to explore the unique characteristics and requirements of visualization within the domain, and to enhance both the Visualization and Bio/Life-Sciences communities by pushing Biological data sets and domain understanding into the Visualization community, and well-informed Visualization solutions back to the Biological community. Amongst several other activities, the BioVis symposium created a data analysis and visualization contest. Unlike many contests in other venues, where the purpose is primarily to allow entrants to demonstrate tour-de-force programming skills on sample problems with known solutions, the BioVis contest was intended to whet the participants' appetites for a tremendously challenging biological domain, and simultaneously produce viable tools for a biological grand challenge domain with no extant solutions. For this purpose expression Quantitative Trait Locus (eQTL) data analysis was selected. In the BioVis 2011 contest, we provided contestants with a synthetic eQTL data set containing real biological variation, as well as a spiked-in gene expression interaction network influenced by single nucleotide polymorphism (SNP) DNA variation and a hypothetical disease model. Contestants were asked to elucidate the pattern of SNPs and interactions that predicted an individual's disease state. 9 teams competed in the contest using a mixture of methods, some analytical and others through visual exploratory methods. Independent panels of visualization and biological experts judged entries. Awards were given for each panel's favorite entry, and an overall best entry agreed upon by both panels. Three special mention awards were given for particularly innovative and useful aspects of those entries. And further recognition was given to entries that correctly answered a bonus question about how a proposed "gene therapy" change to a SNP might change an individual's disease status, which served as a calibration for each approaches' applicability to a typical domain question. In the future, BioVis will continue the data analysis and visualization contest, maintaining the philosophy of providing new challenging questions in open-ended and dramatically underserved Bio/Life Sciences domains. PMID:22607587

  7. Xenopus laevis a success story of biological research in space

    NASA Astrophysics Data System (ADS)

    Horn, Eberhard R.

    2006-01-01

    The clawed toad Xenopus laevis is a common experimental animal used in many disciplines of life sciences, such as integrative, developmental and molecular biology or experimental medicine. Since 30 years, Xenopus is used in biological research in space. Important milestones were the years 1975, when Xenopus embryos flew for the first time on the Russian space station Salut-4 and 1994, when Xenopus eggs were successfully fertilized for the first time in space during the Japanese Spacelab mission STS-47 and developed in microgravity to vital tadpoles. Most Xenopus studies were related to embryogenesis and development. Observations during and after altered gravity revealed changes such as the thickening of the blastocoel roof, the dorsalization of the tail, and modifications of vestibular reflexes, fictive and freely swimming. Many changes were reversible even during microgravity exposure. Studies about the vestibuloocular reflex or synapse formation revealed an age-related sensitivity to altered gravity. Xenopus offers useful tools for studies about microgravity effects on living systems. Its oocyte is a suitable model to study ion channel function in space; the dorsalization model can be used to analyse growth factor sensibilities. Hardware for life support of adults, tadpoles and embryos (cf. SUPPLY unit in combination with miniaquaria) as well as for controlled experiments in space are prerequisites for an extension of research with Xenopus. The application aspect is based on the fact that fundamental research per se brings benefit to man.

  8. New facilities and instruments for developmental biology research in space.

    PubMed

    Brinckmann, Enno

    2003-01-01

    Three new ESA facilities will be available for biological experiments in Space, Biopack on the Space Shuttle and two instruments on the International Space Station (ISS): BIOLAB in the European "Columbus" Laboratory and the European Modular Cultivation System (EMCS) in the US Lab "Destiny". The experiments are housed in standard Experiment Containers, allowing either research in microgravity or acceleration studies with variable g-levels, if mounted on the centrifuges. While Biopack provides only thermal control, BIOLAB and EMCS supply each container with a dedicated atmosphere (controlled CO2, O2 concentration and relative humidity, trace gas removal): EMCS contains also fresh and wastewater reservoirs on its rotors. Power and data lines are available in all the described facilities. Highly automated systems, like BIOLAB's Handling Mechanism and Analysis Instruments, support the telescience concept and help reducing crew time in orbit. A BioGlovebox with its support instruments allows unique research possibilities in Space. The feasibility of experiment hardware inside the containers has been studied by ESA for several kinds of Experiment Support Equipment with potential use for research in Developmental Biology: design concepts for experiments with small eggs, cells and tissues, with small aquatic animals, with insects and with plants are described in this article. PMID:14631636

  9. Biological soil crusts from arctic environments: characterization of the prokaryotic community and exopolysaccharidic matrix analysis.

    NASA Astrophysics Data System (ADS)

    Mugnai, Gianmarco; Ventura, Stefano; Mascalchi, Cristina; Rossi, Federico; Adessi, Alessandra; De Philippis, Roberto

    2015-04-01

    Biological soil crusts (BSCs) are highly specialized topsoil microbial communities widespread in many ecosystems, from deserts to polar regions. BSCs play an active role in promoting soil fertility and plant growth. In Arctic environments BSCs are involved in promoting primary succession after deglaciation, increasing moisture availability and nutrient immission at the topsoil. The organisms residing on BSCs produce extracellular polymeric substances (EPS) in response to the environmental characteristics, thus contributing to the increase of constraint tolerance. The aim of this study was to investigate the taxonomic diversity of microbial communities, together with the analysis of the chemical features of EPS, from BSC samples collected in several sites near Ny-?lesund, Norway. The phylogenetic composition of the prokaryotic community was assessed through a metagenomic approach. Exopolysaccharidic fractions were quantified using ion-exchange chromatography to determine the monosaccharidic composition. Size exclusion chromatography was used to determine the distribution of the EPS fractions. Abundance of phototrophic microorganisms, which are known to contribute to EPS excretion, was also evaluated. Results underlined the complexity of the microbial communities, showing a high level of diversity within the BSC sampled analyzed. The analysis of the polysaccharide composition displayed a high number of constituent sugars; the matrix was found to be constituted by two main fractions, a higher molecular weight (2 10 exp(6) Da) and a lower molecular weight fraction (< 100 10 exp(3) Da). This study presents novel data concerning EPS of BSCs matrix in relationship with the microbial communities in cold environments.

  10. History of Physics Education Research as a Model for Geoscience Education Research Community Progress

    NASA Astrophysics Data System (ADS)

    Slater, T. F.

    2011-12-01

    Discipline-based Education Research (DBER) is a research field richly combining a deep understanding of how to teach a particular discipline with an evolving understanding how people learn that discipline. At its center, DBER has an overarching goal of improving the teaching and learning of a discipline by focusing on understanding the underlying mental mechanisms learners use as they develop expertise. Geoscience Education Research, or GER, is a young but rapidly advancing field which is poised to make important contributions to the teaching and learning of earth and space science. Nascent geoscience education researchers could accelerate their community's progress by learning some of the lessons from the more mature field of Physics Education Research, PER. For the past three decades, the PER community has been on the cutting edge of DBER. PER started purely as an effort among traditionally trained physicists to overcome students' tenaciously held misconceptions about force, motion, and electricity. Over the years, PER has wrestled with the extent to which they included the faculty from the College of Education, the value placed on interpretive and qualitative research methods, the most appropriate involvement of professional societies, the nature of its PhD programs in the College of Science, and how to best disseminate the results of PER to the wider physics teaching community. Decades later, as a more fully mature field, PER still struggles with some of these aspects, but has learned important lessons in how its community progresses and evolves to be successful, valuable, and pertinent.

  11. Global biology - An interdisciplinary scientific research program at NASA, Ames Research Center

    NASA Technical Reports Server (NTRS)

    Lawless, J. G.; Colin, L.

    1983-01-01

    NASA has initiated new effort in Global Biology, the primary focus of which is to understand biogeochemical cycles. As part of this effort, an interdisciplinary team of scientists has formed at Ames Research Center to investigate the cycling of sulfur in the marine coastal zone and to study the cycling of nitrogen in terrestrial ecosystems. Both studies will use remotely sensed data, coupled with ground-based research, to identify and measure the transfer of major and minor biologically produced gases between these ecosystems and global reservoirs.

  12. Global Biology: An Interdisciplinary Scientific Research Program at NASA Ames Research Center

    NASA Technical Reports Server (NTRS)

    Lawless, James G.; Colin, Lawrence

    1984-01-01

    NASA has initiated new effort in Global Biology, the primary focus of which is to understand biogeochemical cycles. As part of this effort, an interdisciplinary team of scientists has formed at Ames Research Center to investigate the cycling of sulfur in the marine coastal zone and to study the cycling of nitrogen in terrestrial ecosystems. Both studies will use remotely sensed data, coupled with ground-based research, to identify and measure the transfer of major and minor biologically produced gases between these ecosystems and global reservoirs.

  13. Recruitment and retention of women in fishing communities in HIV prevention research

    PubMed Central

    Ssetaala, Ali; Nakiyingi-Miiro, Jessica; Asiimwe, Stephen; Nanvubya, Annet; Mpendo, Juliet; Asiki, Gershim; Nielsen, Leslie; Kiwanuka, Noah; Seeley, Janet; Kamali, Anatoli; Kaleebu, Pontiano

    2015-01-01

    Introduction Women in fishing communities in Uganda are more at risk and have higher rates of HIV infection. Socio-cultural gender norms, limited access to health information and services, economic disempowerment, sexual abuse and their biological susceptibility make women more at risk of infection. There is need to design interventions that cater for women's vulnerability. We explore factors affecting recruitment and retention of women from fishing communities in HIV prevention research. Methods An HIV incidence cohort screened 2074 volunteers (1057 men and 1017 women) aged 13-49 years from 5 fishing communities along Lake Victoria using demographic, medical history, risk behaviour assessment questionnaires.1000 HIV negative high risk volunteers were enrolled and followed every 6 months for 18 months. Factors associated with completion of study visits among women were analyzed using multivariable logistic regression. Results Women constituted 1,017(49%) of those screened, and 449(45%) of those enrolled with a median (IQR) age of 27 (22-33) years. Main reasons for non-enrolment were HIV infection (33.9%) and reported low risk behaviour (37.5%). A total of 382 (74%) women and 332 (69%) men completed all follow up visits. Older women (>24 yrs) and those unemployed, who had lived in the community for 5 years or more, were more likely to complete all study visits. Conclusion Women had better retention rates than men at 18 months. Strategies for recruiting and retaining younger women and those who have stayed for less than 5 years need to be developed for improved retention of women in fishing communities in HIV prevention and research Programs. PMID:26379811

  14. Quantifying biological integrity of California sage scrub communities using plant life-form cover.

    SciTech Connect

    Hamada, Y.; Stow, D. A.; Franklin, J.

    2010-01-01

    The California sage scrub (CSS) community type in California's Mediterranean-type ecosystems supports a large number of rare, threatened, and endangered species, and is critically degraded and endangered. Monitoring ecological variables that provide information about community integrity is vital to conserving these biologically diverse communities. Fractional cover of true shrub, subshrub, herbaceous vegetation, and bare ground should fill information gaps between generalized vegetation type maps and detailed field-based plot measurements of species composition and provide an effective means for quantifying CSS community integrity. Remote sensing is the only tool available for estimating spatially comprehensive fractional cover over large extent, and fractional cover of plant life-form types is one of the measures of vegetation state that is most amenable to remote sensing. The use of remote sensing does not eliminate the need for either field surveying or vegetation type mapping; rather it will likely require a combination of approaches to reliably estimate life-form cover and to provide comprehensive information for communities. According to our review and synthesis, life-form fractional cover has strong potential for providing ecologically meaningful intermediate-scale information, which is unattainable from vegetation type maps and species-level field measurements. Thus, we strongly recommend incorporating fractional cover of true shrub, subshrub, herb, and bare ground in CSS community monitoring methods. Estimating life-form cover at a 25 m x 25 m spatial scale using remote sensing would be an appropriate approach for initial implementation. Investigation of remote sensing techniques and an appropriate spatial scale; collaboration of resource managers, biologists, and remote sensing specialists, and refinement of protocols are essential for integrating life-form fractional cover mapping into strategies for sustainable long-term CSS community management.

  15. Community plans for future of ocean biogeochemical research

    NASA Astrophysics Data System (ADS)

    Murray, James W.; Paffenhofer, Gustav-Adolf

    Members of the biogeochemical research community are taking steps to keep their work thriving in the next millennium. Since 1984, major questions in ocean biogeochemical research have been studied in a concerted manner in the Joint Global Ocean Flux Study (JGOFS) program. This effort as well as the World Ocean Circulation Experiment (WOCE) and Global Ocean Ecosystem Dynamics program (GOED) is part of the U.S. Global Change Research Plan (USGCRP). The JGOFS Science Plan established two goals: to determine and understand on a global scale the processes controlling the time-varying fluxes of carbon and associated biogenic elements in the ocean, and to develop the capability to predict on a global scale the response of oceanic biogeochemical processes to anthropogenic perturbations, particularly those related to climate change.

  16. Community-Based Research and American Indians with Disabilities: Learning Together Methods that Work.

    ERIC Educational Resources Information Center

    Marshall, Catherine A.; Johnson, Sharon R.; Kendall, Elizabeth; Busby, Howard; Schacht, Robert; Hill, Calvin

    Researchers working with the American Indian Rehabilitation Research and Training Center in Arizona have found that culture is important in social research, especially with indigenous people. Community-based participatory research is one approach that has yielded outcomes valuable to researchers and community members. However, ethical concerns…

  17. Community Engagement in Health-Related Research: A Case Study of a Community-Linked Research Infrastructure, Jefferson County, Arkansas, 2011–2013

    PubMed Central

    Felix, Holly C.; Olson, Mary; Cottoms, Naomi; Bachelder, Ashley; Smith, Johnny; Ford, Tanesha; Dawson, Leah C.; Greene, Paul G.

    2015-01-01

    Background Underrepresentation of racial minorities in research contributes to health inequities. Important factors contributing to low levels of research participation include limited access to health care and research opportunities, lack of perceived relevance, power differences, participant burden, and absence of trust. We describe an enhanced model of community engagement in which we developed a community-linked research infrastructure to involve minorities in research both as participants and as partners engaged in issue selection, study design, and implementation. Community Context We implemented this effort in Jefferson County, Arkansas, which has a predominantly black population, bears a disproportionate burden of chronic disease, and has death rates above state and national averages. Methods Building on existing community–academic partnerships, we engaged new partners and adapted a successful community health worker model to connect community residents to services and relevant research. We formed a community advisory board, a research collaborative, a health registry, and a resource directory. Outcome Newly formed community–academic partnerships resulted in many joint grant submissions and new projects. Community health workers contacted 2,665 black and 913 white community residents from December 2011 through April 2013. Eighty-five percent of blacks and 88% of whites were willing to be re-contacted about research of potential interest. Implementation challenges were addressed by balancing the needs of science with community needs and priorities. Interpretation Our experience indicates investments in community-linked research infrastructure can be fruitful and should be considered by academic health centers when assessing institutional research infrastructure needs. PMID:26203813

  18. INTERRELATIONSHIPS BETWEEN VENT FLUID CHEMISTRY, TEMPERATURE, SEISMIC ACTIVITY, AND BIOLOGICAL COMMUNITY STRUCTURE AT A MUSSEL-DOMINATED,

    E-print Network

    Waldhauser, Felix

    COMMUNITY STRUCTURE AT A MUSSEL-DOMINATED, DEEP-SEA HYDROTHERMAL VENT ALONG THE EAST PACIFIC RISE RICHARD A hydrothermal vents between 9°45# and 9°52#N along the crest of the East Pacific Rise (EPR). Dramatic changes controlling biological community structure in these hydrothermal ecosystems. KEY WORDS: hydrothermal vents

  19. Effects of anthropogenic salinization on biological traits and community composition of stream macroinvertebrates.

    PubMed

    Szöcs, Eduard; Coring, Eckhard; Bäthe, Jürgen; Schäfer, Ralf B

    2014-01-15

    Salinization of rivers resulting from industrial discharge or road-deicing can adversely affect macroinvertebrates. Trait-based approaches are a promising tool in ecological monitoring and may perform better than taxonomy-based approaches. However only little is known how and which biological traits are affected by salinization. We investigated the effects of anthropogenic salinization on macroinvertebrate communities and biological traits in the Werra River, Germany and compared the taxonomic and trait response. We found a change in macroinvertebrate community and trait composition. Communities at saline sites were characterized by the three exotic species Gammarus tigrinus, Apocorophium lacustre and Potamopyrgus antipodarum. The frequencies of trait modalities long life cycle duration, respiration by gill, ovoviviparity, shredder and multivoltinism were statistically significantly increased at saline sites. The trait-based ordination resulted in a higher explained variance than the taxonomy-based ordination, indicating a better performance of the trait-based approach, resulting in a better discrimination between saline and non-saline sites. Our results are in general agreement with other studies from Europe, indicating a trait convergence for saline streams, being dominated by the traits ovoviviparity and multivoltinism. Three further traits (respiration by gill, life cycle duration and shredders) responded strongly to salinization, but this may primarily be attributed to the dominance of a single invasive species, G. tigrinus, at the saline sites in the Werra River. PMID:24080419

  20. Characterizing User Communities of Large Multi-Disciplinary Research Facilities

    NASA Astrophysics Data System (ADS)

    Ludwig, K. A.

    2012-12-01

    Large-scale multi-user research facilities are a critical component of the federal science and engineering research enterprise. Developing infrastructure for multidisciplinary research requires large investments over long periods of time and typically involves partnerships across many institutions. Consequently, multiple policy questions surround federal investments in large research facilities including what is the best way to maximize scientific productivity? How should investments in infrastructure be balanced with support for individual or small group research? For many facilities, the answers to these questions become focused on the activities of the users: the individuals who are interacting with the facility for furthering scientific research and/or education. This independent study provides the first known analysis of facility utilization. Four facilities supported by the National Science Foundation (NSF) are used as case studies to create a conceptual framework for characterizing facility utilization, to examine changes in facility use over time, and to define how lessons learned can be applied to facility management and planning. Results show that there is a broad spectrum of users who interact with each facility in different ways and that for some facilities, unanticipated users are driving new areas of research. This work also shows that cyberinfrastructure-enabled facilities are experiencing rapid increases in data use and in some cases, the next generation of facility users appears to be developing new skills for working in an increasingly data-intensive research environment. Characterizing and quantifying large facility use will likely become increasingly important as the federal government continues to focus on developing metrics and evaluation tools for its investments in science and engineering research. This work establishes a foundation for assessing facility utilization and shows that this area is ripe for future work that may include portfolio-wide analyses, network or community mapping, and applications to other research investments.

  1. Breeding biology of an afrotropical forest understory bird community in northeastern Tanzania

    USGS Publications Warehouse

    Mkongewa, Victor J.; Newmark, William D.; Stanley, Thomas R.

    2013-01-01

    Many aspects of the breeding biology of Afrotropical forest birds are poorly known. Here we provide a description based on the monitoring of 1461 active nests over eight breeding seasons about one or more aspects of the breeding biology for 28 coexisting understory bird species on the Amani Plateau in the East Usambara Mountains, Tanzania. Mean nest height and mean distance of nest from forest edge varied widely among species with most species constructing nests across a broad vertical and forest edge to interior gradient. However, there were important exceptions with all sunbird species and several dove and waxbill species constructing nests in close proximity to the forest edge. For 17 common species for which we recorded two or more active nests, mean clutch size across species was 1.9 eggs per clutch, the lowest site-specific mean clutch size yet reported for a tropical forest bird community. For nine bird species, a subset of the 17 common species, length of breeding season, defined as the difference between the earliest and latest recorded incubation onset date, ranged from 88–139 days. Most of these nine species displayed a unimodal distribution in incubation onset dates across a breeding season which extended from the end of August through middle January. In summary, a wide variation exists in most aspects of the breeding biology within an understory forest bird community in the East Usambara Mountains.

  2. Soil nematode communities are ecologically more mature beneath late-than early-successional stage biological soil crusts

    E-print Network

    Neher, Deborah A.

    Soil nematode communities are ecologically more mature beneath late- than early-successional stage biological soil crusts Brian J. Darby a,*, Deborah A. Neher a , Jayne Belnap b a Department of Plant and Soil; accepted 12 April 2006 Abstract Biological soil crusts are key mediators of carbon and nitrogen inputs

  3. Personalizing nutrigenomics research through community based participatory research and omics technologies.

    PubMed

    McCabe-Sellers, Beverly; Lovera, Dalia; Nuss, Henry; Wise, Carolyn; Ning, Baitang; Teitel, Candee; Clark, Beatrice Shelby; Toennessen, Terri; Green, Bridgett; Bogle, Margaret L; Kaput, Jim

    2008-12-01

    Personal and public health information are often obtained from studies of large population groups. Risk factors for nutrients, toxins, genetic variation, and more recently, nutrient-gene interactions are statistical estimates of the percentage reduction in disease in the population if the risk were to be avoided or the gene variant were not present. Because individuals differ in genetic makeup, lifestyle, and dietary patterns than those individuals in the study population, these risk factors are valuable guidelines, but may not apply to individuals. Intervention studies are likewise limited by small sample sizes, short time frames to assess physiological changes, and variable experimental designs that often preclude comparative or consensus analyses. A fundamental challenge for nutrigenomics will be to develop a means to sort individuals into metabolic groups, and eventually, develop risk factors for individuals. To reach the goal of personalizing medicine and nutrition, new experimental strategies are needed for human study designs. A promising approach for more complete analyses of the interaction of genetic makeups and environment relies on community-based participatory research (CBPR) methodologies. CBPR's central focus is developing a partnership among researchers and individuals in a community that allows for more in depth lifestyle analyses but also translational research that simultaneously helps improve the health of individuals and communities. The USDA-ARS Delta Nutrition Intervention Research program exemplifies CBPR providing a foundation for expanded personalized nutrition and medicine research for communities and individuals. PMID:19040372

  4. BCTR: Biological and Chemical Technologies Research 1994 annual summary report

    SciTech Connect

    Petersen, G.

    1995-02-01

    The annual summary report presents the fiscal year (FY) 1994 research activities and accomplishments for the United States Department of Energy (DOE) Biological and Chemical Technologies Research (BCTR) Program of the Advanced Industrial Concepts Division (AICD). This AICD program resides within the Office of Industrial Technologies (OIT) of the Office of Energy Efficiency and Renewable Energy (EE). Although the OIT was reorganized in 1991 and AICD no longer exists, this document reports on efforts conducted under the former structure. The annual summary report for 1994 (ASR 94) contains the following: program description (including BCTR program mission statement, historical background, relevance, goals and objectives); program structure and organization, selected technical and programmatic highlights for 1994; detailed descriptions of individual projects; a listing of program output, including a bibliography of published work; patents, and awards arising from work supported by BCTR.

  5. Space Station Freedom: a unique laboratory for gravitational biology research.

    PubMed

    Phillips, R W; Cowing, K L

    1993-04-01

    The advent of Space Station Freedom (SSF) will provide a permanent laboratory in space with unparalleled opportunities to perform biological research. As with any spacecraft there will also be limitations. It is our intent to describe this space laboratory and present a picture of how scientists will conduct research in this unique environment we call space. SSF is an international venture which will continue to serve as a model for other peaceful international efforts. It is hoped that as the human race moves out from this planet back to the moon and then on to Mars that SSF can serve as a successful example of how things can and should be done. PMID:11537716

  6. Medical education through community experience: an update on the community research projects at the USDSM Sioux Falls Campus.

    PubMed

    Hearns, Valerie L

    2005-06-01

    Community Research Projects are a requirement and an integral part of the year long, ambulatory third-year course in Sioux Falls, SD, called Primary Care Ambulatory Program (PCAP). Since 1997, this community research project has sought to increase a student's understanding of a community health issue by allowing the student to pose and answer a research question, while providing some type of service or education to the targeted community. Projects at all three clinical campuses were previously featured in the June 2001, issue of the South Dakota Journal of Medicine. This report is an update on the activities and progress of the community research projects at the Sioux Falls campus since that initial report. PMID:16050658

  7. Data management for community research projects: A JGOFS case study

    NASA Technical Reports Server (NTRS)

    Lowry, Roy K.

    1992-01-01

    Since the mid 1980s, much of the marine science research effort in the United Kingdom has been focused into large scale collaborative projects involving public sector laboratories and university departments, termed Community Research Projects. Two of these, the Biogeochemical Ocean Flux Study (BOFS) and the North Sea Project incorporated large scale data collection to underpin multidisciplinary modeling efforts. The challenge of providing project data sets to support the science was met by a small team within the British Oceanographic Data Centre (BODC) operating as a topical data center. The role of the data center was to both work up the data from the ship's sensors and to combine these data with sample measurements into online databases. The working up of the data was achieved by a unique symbiosis between data center staff and project scientists. The project management, programming and data processing skills of the data center were combined with the oceanographic experience of the project communities to develop a system which has produced quality controlled, calibrated data sets from 49 research cruises in 3.5 years of operation. The data center resources required to achieve this were modest and far outweighed by the time liberated in the scientific community by the removal of the data processing burden. Two online project databases have been assembled containing a very high proportion of the data collected. As these are under the control of BODC their long term availability as part of the UK national data archive is assured. The success of the topical data center model for UK Community Research Project data management has been founded upon the strong working relationships forged between the data center and project scientists. These can only be established by frequent personal contact and hence the relatively small size of the UK has been a critical factor. However, projects covering a larger, even international scale could be successfully supported by a network of topical data centers managing online databases which are interconnected by object oriented distributed data management systems over wide area networks.

  8. A Community-Based Participatory Critique of Social Isolation Intervention Research for Community-Dwelling Older Adults

    PubMed Central

    Sabir, Myra; Wethington, Elaine; Breckman, Risa; Meador, Rhoda; Reid, M. C.; Pillemer, Karl

    2014-01-01

    This article examines the dialogue that occurred within the structure of a Research-to-Practice Consensus Workshop that critiqued academic research priorities regarding social isolation among community-dwelling older adults and identified practice-based suggestions for a social isolation research agenda. The investigators adapted the scientific consensus workshop model to include expert practitioners and researchers in a discussion of the current state and future directions of social isolation intervention research. The group’s critique resulted in several key recommendations for future research including the need for a social isolation measure with specific capacity to identify isolated older adults during a community crisis. This study demonstrates that the Research-to-Practice Consensus Workshop model can be used successfully to identify priority areas for research that have implications for community practice, construct an evidence base more relevant for community application, strengthen existing community–researcher partnerships, and build agency and practitioner capacity to take part in community-based participatory research. PMID:25165409

  9. Taking a Stand: The Genetics Community's Responsibility for Intelligence Research.

    PubMed

    Callier, Shawneequa L; Bonham, Vence L

    2015-01-01

    There is a longstanding debate about genetics research into intelligence. Some scholars question the value of focusing on genetic contributions to intelligence in a society where social and environmental determinants powerfully influence cognitive ability and educational outcomes. Others warn that censoring certain research questions, such as inquiries about genetic differences in intellectual potential, compromises academic freedom. Still others view interest in this subject as a corollary to a long and troublesome history of eugenics research. The dawn of a new era in genome sequencing as a commodity will sustain scientific interest in the genetics of intelligence for the foreseeable future, but deep-rooted challenges threaten the scientific merit of the research. The use of imprecise definitions of study populations, the difficult nature of studying the environment, and the potential of researcher bias are inextricably linked with concerns about the trustworthiness and utility of research in this area. Leadership by the genetics community is essential to ensure the value and trustworthiness of these studies. PMID:26413950

  10. Meeting the research infrastructure needs of micropolitan and rural communities.

    PubMed

    Strasburger, Janette F

    2009-05-01

    In the 1800s, this country chose to establish land-grant colleges to see that the working class could attain higher education, and that the research needs of the agricultural and manufacturing segments of this country could be met. It seems contrary to our origins to see so little support at present for research infrastructure going to the very communities that need such research to sustain their populations, grow their economies, to attract physicians, to provide adequate health care, and to educate, retain, and employ their youth. Cities are viewed as sources for high-paying jobs, yet many of these same jobs could be translated to rural and micropolitan areas, provided that the resources are established to support it. One of the fastest growing economic periods in this country's history was during World War II, when even the smallest and most remote towns contributed substantially to the innovations, manufacture, and production of goods benefiting our nation as a whole. Rural areas have always lagged somewhat behind metropolitan areas in acquisition of new technology. Rural electricity and rural phone access are examples from the past. Testing our universities' abilities to grow distributive research networks beyond their campuses will create a competitive edge regionally, against global workplace, educational, and research competition, and will lay the groundwork for efficiency in research and for new innovation. PMID:19552350

  11. Department of Energy's Biological and Environmental Research Strategic Data Roadmap for Earth System Science

    SciTech Connect

    Williams, Dean N.; Palanisamy, Giri; Shipman, Galen; Boden, Thomas A.; Voyles, Jimmy W.

    2014-04-25

    Rapid advances in experimental, sensor, and computational technologies and techniques are driving exponential growth in the volume, acquisition rate, variety, and complexity of scientific data. This wealth of scientifically meaningful data has tremendous potential to lead to scientific discovery. However, to achieve scientific breakthroughs, these data must be exploitable—they must be analyzed effectively and efficiently and the results shared and communicated easily within the wider Department of Energy’s (DOE’s) Biological and Environmental Research (BER) Climate and Environmental Sciences Division (CESD) community. The explosion in data complexity and scale makes these tasks exceedingly difficult to achieve, particularly given that an increasing number of disciplines are working across techniques, integrating simulation and experimental or observational results (see Table 5 in Appendix 2). Consequently, we need new approaches to data management, analysis, and visualization that provide research teams with easy-to-use and scalable end-to-end solutions. These solutions must facilitate (and where feasible, automate and capture) every stage in the data lifecycle (shown in Figure 1), from collection to management, annotation, sharing, discovery, analysis, and visualization. In addition, the core functionalities are the same across climate science communities, but they require customization to adapt to specific needs and fit into research and analysis workflows. To this end, the mission of CESD’s Data and Informatics Program is to integrate all existing and future distributed CESD data holdings into a seamless and unified environment for the acceleration of Earth system science.

  12. 2010 Tetrapyrroles, Chemistry & Biology of Gordon Research Conference

    SciTech Connect

    Angela Wilks

    2010-07-30

    The objective of the Chemistry & Biology of Tetrapyrroles Gordon Conference is to bring together researchers from diverse disciplines that otherwise would not interact. By bringing biologists, chemists, engineers and clinicians with a common interest in tetrapyrroles the conference provides a forum for cross-disciplinary ideas and collaboration. The perspective provided by biologists, chemists, and clinicians working in fields such as newly discovered defects in human porphyrin metabolism, the myriad of strategies for light harvesting in photosynthetic organisms, novel tetrapyrroles that serve as auxiliary chromophores or enzyme cofactors, synthetic strategies in the design of novel tetrapyrrole scaffolds, and tetrapyrrole based cell signaling and regulatory systems, makes this conference unique in the field. Over the years the growing evidence for the role of tetrapyrroles and their reactive intermediates in cell signaling and regulation has been of increasing importance at this conference. The 2010 conference on Chemistry & Biology of Tetrapyrroles will focus on many of these new frontiers as outlined in the preliminary program listed. Speakers will emphasize unpublished results and new findings in the field. The oral sessions will be followed by the highly interactive afternoon poster sessions. The poster sessions provide all conferees with the opportunity to present their latest research and to exchange ideas in a more informal setting. As in the past, this opportunity will continue during the nightly social gathering that takes place in the poster hall following the evening lectures. All conferees are encouraged to submit and present posters. At the conference the best poster in the areas of biology, chemistry and medicine will be selected by a panel of previous conference chairs.

  13. Systems biology driven software design for the research enterprise

    PubMed Central

    Boyle, John; Cavnor, Christopher; Killcoyne, Sarah; Shmulevich, Ilya

    2008-01-01

    Background In systems biology, and many other areas of research, there is a need for the interoperability of tools and data sources that were not originally designed to be integrated. Due to the interdisciplinary nature of systems biology, and its association with high throughput experimental platforms, there is an additional need to continually integrate new technologies. As scientists work in isolated groups, integration with other groups is rarely a consideration when building the required software tools. Results We illustrate an approach, through the discussion of a purpose built software architecture, which allows disparate groups to reuse tools and access data sources in a common manner. The architecture allows for: the rapid development of distributed applications; interoperability, so it can be used by a wide variety of developers and computational biologists; development using standard tools, so that it is easy to maintain and does not require a large development effort; extensibility, so that new technologies and data types can be incorporated; and non intrusive development, insofar as researchers need not to adhere to a pre-existing object model. Conclusion By using a relatively simple integration strategy, based upon a common identity system and dynamically discovered interoperable services, a light-weight software architecture can become the focal point through which scientists can both get access to and analyse the plethora of experimentally derived data. PMID:18578887

  14. Expanding the obesity research paradigm to reach African American communities.

    PubMed

    Kumanyika, Shiriki K; Whitt-Glover, Melicia C; Gary, Tiffany L; Prewitt, T Elaine; Odoms-Young, Angela M; Banks-Wallace, Joanne; Beech, Bettina M; Halbert, Chanita Hughes; Karanja, Njeri; Lancaster, Kristie J; Samuel-Hodge, Carmen D

    2007-10-01

    Obesity is more prevalent among African Americans and other racial and ethnic minority populations than among whites. The behaviors that determine weight status are embedded in the core social and cultural processes and environments of day-to-day life in these populations. Therefore, identifying effective, sustainable solutions to obesity requires an ecological model that is inclusive of relevant contextual variables. Race and ethnicity are potent stratification variables in U.S. society and strongly influence life contexts, including many aspects that relate to eating and physical activity behaviors. This article describes a synthesis initiated by the African American Collaborative Obesity Research Network (AACORN) to build and broaden the obesity research paradigm. The focus is on African Americans, but the expanded paradigm has broader implications and may apply to other populations of color. The synthesis involves both community and researcher perspectives, drawing on and integrating insights from an expanded set of knowledge domains to promote a deeper understanding of relevant contexts. To augment the traditional, biomedical focus on energy balance, the expanded paradigm includes insights from family sociology, literature, philosophy, transcultural psychology, marketing, economics, and studies of the built environment. We also emphasize the need for more attention to tensions that may affect African American or other researchers who identify or are identified as members of the communities they study. This expanded paradigm, for which development is ongoing, poses new challenges for researchers who focus on obesity and obesity-related health disparities but also promises discovery of new directions that can lead to new solutions. PMID:17875256

  15. Using biological control research in the classroom to promote scientific inquiry and literacy

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Many scientists who research biological control also teach at universities or more informally through cooperative outreach. The purpose of this paper is to review biological control activities for the classroom in four refereed journals, The American Biology Teacher, Journal of Biological Education...

  16. Community Music: History and Current Practice, Its Constructions of "Community", Digital Turns and Future Soundings, an Arts and Humanities Research Council Research Review

    ERIC Educational Resources Information Center

    McKay, George; Higham, Ben

    2012-01-01

    The United Kingdom has been a pivotal national player within the development of community music practice. There are elements of cultural and debatably pedagogic innovations in community music. These have to date only partly been articulated and historicized within academic research. This report, funded by the UK's Arts and Humanities Research

  17. Climate change and physical disturbance manipulations result in distinct biological soil crust communities

    USGS Publications Warehouse

    Steven, Blaire; Kuske, Cheryl R.; Gallegos-Graves, La Verne; Reed, Sasha C.; Belnap, Jayne

    2015-01-01

    Biological soil crusts (biocrusts) colonize plant interspaces in many drylands and are critical to soil nutrient cycling. Multiple climate change and land use factors have been shown to detrimentally impact biocrusts on a macroscopic (i.e., visual) scale. However, the impact of these perturbations on the bacterial components of the biocrusts remain poorly understood. We employed multiple long-term field experiments to assess the impacts of chronic physical (foot trampling) and climatic changes (2 °C soil warming, altered summer precipitation (wetting), and combined warming and wetting) on biocrust bacterial biomass, composition, and metabolic profile. The biocrust bacterial communities adopted distinct states based on the mechanism of disturbance. Chronic trampling decreased biomass and caused small community compositional change. Soil warming had little effect on biocrust biomass or composition, while wetting resulted in an increase in cyanobacterial biomass and altered bacterial composition. Warming combined with wetting dramatically altered bacterial composition and decreased cyanobacteria abundance. Shotgun metagenomic sequencing identified four functional gene categories that differed in relative abundance among the manipulations, suggesting that climate and land use changes affected soil bacterial functional potential. This study illustrates that different types of biocrust disturbance damage biocrusts in macroscopically similar ways, but they differentially impact the resident soil bacterial communities and the community functional profile can differ depending on the disturbance type. Therefore, the nature of the perturbation and the microbial response are important considerations for management and restoration of drylands.

  18. Climate Change and Physical Disturbance Manipulations Result in Distinct Biological Soil Crust Communities.

    PubMed

    Steven, Blaire; Kuske, Cheryl R; Gallegos-Graves, La Verne; Reed, Sasha C; Belnap, Jayne

    2015-11-01

    Biological soil crusts (biocrusts) colonize plant interspaces in many drylands and are critical to soil nutrient cycling. Multiple climate change and land use factors have been shown to detrimentally impact biocrusts on a macroscopic (i.e., visual) scale. However, the impact of these perturbations on the bacterial components of the biocrusts remains poorly understood. We employed multiple long-term field experiments to assess the impacts of chronic physical (foot trampling) and climatic changes (2°C soil warming, altered summer precipitation [wetting], and combined warming and wetting) on biocrust bacterial biomass, composition, and metabolic profile. The biocrust bacterial communities adopted distinct states based on the mechanism of disturbance. Chronic trampling decreased biomass and caused small community compositional changes. Soil warming had little effect on biocrust biomass or composition, while wetting resulted in an increase in the cyanobacterial biomass and altered bacterial composition. Warming combined with wetting dramatically altered bacterial composition and decreased Cyanobacteria abundance. Shotgun metagenomic sequencing identified four functional gene categories that differed in relative abundance among the manipulations, suggesting that climate and land use changes affected soil bacterial functional potential. This study illustrates that different types of biocrust disturbance damage biocrusts in macroscopically similar ways, but they differentially impact the resident soil bacterial communities, and the communities' functional profiles can differ depending on the disturbance type. Therefore, the nature of the perturbation and the microbial response are important considerations for management and restoration of drylands. PMID:26276111

  19. Transforming Biology Curriculum at Navajo Community College to Include Navajo and Western Cultural Knowledge.

    ERIC Educational Resources Information Center

    Garrison, Edward R.

    1994-01-01

    Describes how a college teacher used Navajo traditional knowledge to rethink the teaching of college biology. Suggests that teachers intimidated by the intricate Dine Philosophy of Education may integrate Navajo knowledge into their courses through focused research guided by Navajo consultants. Includes five examples of redesigned curricula for…

  20. Research Problems in Community College Mathematics Education: Testing the Boundaries of K-12 Research

    ERIC Educational Resources Information Center

    Mesa, Vilma; Wladis, Claire; Watkins, Laura

    2014-01-01

    This commentary articulates the need to investigate problems of mathematics instruction at community colleges. The authors briefly describe some features of this often-ignored institution and the current status of research. They also make an argument for how investigations of instruction in this setting can both advance understanding of this…

  1. Research as Mission Creep? Reconsidering Scholarship in the Community College. In Brief

    ERIC Educational Resources Information Center

    Gump, Steven E.

    2006-01-01

    Community college faculty clearly do more than teach. When the potential scholarly activities of full-time community college faculty are narrowly defined as research, however, mission creep is insinuated, and community colleges are accused of attempting to encroach upon the purview of four-year research institutions in an expression of "goal…

  2. Community-Engaged Scholarship: Critical Junctures in Research, Practice, and Policy

    ERIC Educational Resources Information Center

    Wenger, Lisa; Hawkins, Linda; Seifer, Sarena D.

    2012-01-01

    Community-engaged scholarship and community-academic partnerships are gaining momentum in higher education institutions. Federal research funding agencies in Canada have moved aggressively toward increasing support for community-engaged research and knowledge mobilization efforts. Yet there is a well-articulated disjuncture between calls for…

  3. Developmental Brain Research with Participants from Underprivileged Communities: Strategies for Recruitment, Participation, and Retention

    ERIC Educational Resources Information Center

    Habibi, Assal; Sarkissian, Alissa Der; Gomez, Martha; Ilari, Beatriz

    2015-01-01

    Challenges associated with recruitment and retention of participants from underprivileged social communities, in addition to neuroscience researchers' unfamiliarity with these communities, possibly explain the limited number of individuals from these communities who participate in neuroscience research studies. The consequence is a scarcity of…

  4. The Metropolitan Studies Institute at USC Upstate: Translational Research that Drives Community Decision-Making

    ERIC Educational Resources Information Center

    Brady, Kathleen

    2012-01-01

    The Metropolitan Studies Institute (MSI) at the University of South Carolina Upstate (USC Upstate) demonstrates a robust and unique record of community impact through community indicators research and other translational research. The MSI's work drives programmatic priorities and funding decisions, generates revenue, and increases the community's…

  5. Community College Student Success Programs: A Synthesis, Critique, and Research Agenda

    ERIC Educational Resources Information Center

    Crisp, Gloria; Taggart, Amanda

    2013-01-01

    A narrative review was developed to add to the discussion and dissemination of research on community colleges. The review adds to existing work by synthesizing and critiquing the empirical research to date specific to three of the most prevalent programmatic efforts presently seen on community college campuses: (a) learning communities, (b)…

  6. Low-gravity Orbiting Research Laboratory Environment Potential Impact on Space Biology Research

    NASA Technical Reports Server (NTRS)

    Jules, Kenol

    2006-01-01

    One of the major objectives of any orbital space research platform is to provide a quiescent low gravity, preferably a zero gravity environment, to perform fundamental as well as applied research. However, small disturbances exist onboard any low earth orbital research platform. The impact of these disturbances must be taken into account by space research scientists during their research planning, design and data analysis in order to avoid confounding factors in their science results. The reduced gravity environment of an orbiting research platform in low earth orbit is a complex phenomenon. Many factors, among others, such as experiment operations, equipment operation, life support systems and crew activity (if it is a crewed platform), aerodynamic drag, gravity gradient, rotational effects as well as the vehicle structural resonance frequencies (structural modes) contribute to form the overall reduced gravity environment in which space research is performed. The contribution of these small disturbances or accelerations is precisely why the environment is NOT a zero gravity environment, but a reduced acceleration environment. This paper does not discuss other factors such as radiation, electromagnetic interference, thermal and pressure gradient changes, acoustic and CO2 build-up to name a few that affect the space research environment as well, but it focuses solely on the magnitude of the acceleration level found on orbiting research laboratory used by research scientists to conduct space research. For ease of analysis this paper divides the frequency spectrum relevant to most of the space research disciplines into three regimes: a) quasi-steady, b) vibratory and c) transient. The International Space Station is used as an example to illustrate the point. The paper discusses the impact of these three regimes on space biology research and results from space flown experiments are used to illustrate the potential negative impact of these disturbances (accelerations) on space biology research.

  7. Using Biological-Control Research in the Classroom to Promote Scientific Inquiry & Literacy

    ERIC Educational Resources Information Center

    Richardson, Matthew L.; Richardson, Scott L.; Hall, David G.

    2012-01-01

    Scientists researching biological control should engage in education because translating research programs into classroom activities is a pathway to increase scientific literacy among students. Classroom activities focused on biological control target all levels of biological organization and can be cross-disciplinary by drawing from subject areas…

  8. Indigenous community based participatory research and health impact assessment: A Canadian example

    SciTech Connect

    Kwiatkowski, Roy E.

    2011-07-15

    The Environmental Health Research Division (EHRD) of the First Nations and Inuit Health Branch, Health Canada conducts science-based activities and research with Canadian Indigenous communities in areas such as climate change adaptation, environmental contaminants, water quality, biomonitoring, risk assessment, health impact assessment, and food safety and nutrition. EHRD's research activities have been specifically designed to not only inform Health Canada's policy decision-makers but as well, Indigenous community decision-makers. This paper will discuss the reasons why Indigenous community engagement is important, what are some of the barriers preventing community engagement; and the efforts by EHRD to carry out community-based participatory research activities with Indigenous peoples.

  9. Community Perspectives on Factors that Influence Collaboration in Public Health Research

    ERIC Educational Resources Information Center

    Pinto, Rogerio M.

    2009-01-01

    Community collaboration in research may lead to better methods, results, and dissemination of interventions. Little systematic research has examined specific factors that influence community-based organizations (CBOs) to collaborate in public health research. There is an urgent need to advance knowledge on this topic so that together, researchers

  10. Community-Based Participatory Clinical Research in Obesity by Adolescents: Pipeline for Researchers of the Future

    PubMed Central

    Branch, Robert; Chester, Ann

    2015-01-01

    We propose a novel, untapped opportunity, challenging cultural and man-power barriers to transferring advances in biomedical science knowledge that will improve community health care (Type II Clinical Translational Research) in a medically underserved community. We describe a pilot model in which adolescents apply principles of Community-Based Participatory Research (CBPR) at the epicenter of the obesity diabetes epidemic in rural Appalachia in West Virginia. The model invites minority, financially disadvantaged, and educationally disadvantaged adolescents to become educated on ethics, then provides infrastructure to support study design and conduct of CBPR. This experience demonstrates that these adolescents can efficiently, with quality and integrity, reach into the most vulnerable of communities and their own families to show that the prevalence of obesity is at 50% and diabetes 10.4% (n = 989). Our experience illustrates the infrastructure requirements for this strategy to be successful and emphasizes the substantial benefit that could accrue if the model is successfully sustained. The benefit includes not only the translation of knowledge to influence community lifestyle behavior but also the creation of a pipeline of new biomedical scientists for the future. PMID:20443918

  11. Views on Researcher-Community Engagement in Autism Research in the United Kingdom: A Mixed-Methods Study

    PubMed Central

    Pellicano, Elizabeth; Dinsmore, Adam; Charman, Tony

    2014-01-01

    There has been a substantial increase in research activity on autism during the past decade. Research into effective ways of responding to the immediate needs of autistic people is, however, less advanced, as are efforts at translating basic science research into service provision. Involving community members in research is one potential way of reducing this gap. This study therefore investigated the views of community involvement in autism research both from the perspectives of autism researchers and of community members, including autistic adults, family members and practitioners. Results from a large-scale questionnaire study (n?=?1,516) showed that researchers perceive themselves to be engaged with the autism community but that community members, most notably autistic people and their families, did not share this view. Focus groups/interviews with 72 participants further identified the potential benefits and remaining challenges to involvement in research, especially regarding the distinct perspectives of different stakeholders. Researchers were skeptical about the possibilities of dramatically increasing community engagement, while community members themselves spoke about the challenges to fully understanding and influencing the research process. We suggest that the lack of a shared approach to community engagement in UK autism research represents a key roadblock to translational endeavors. PMID:25303222

  12. Grantee Spotlight: Katherine Briant, MPH, CHES - Bridging Community Cancer Education Efforts with Health Disparities Research

    Cancer.gov

    Every day brings new opportunities to support community outreach and research as Katherine Briant, M.P.H., C.H.E.S. endeavors to improve the health of disparity communities in the state of Washington.

  13. 76 FR 37341 - Final Priority; Rehabilitation Research and Training Center-Interventions To Promote Community...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-06-27

    ...Interventions To Promote Community Living Among Individuals with Disabilities...strategies that improve community living services and supports for individuals...research syntheses consistent with standards, guidelines, and procedures...with centers for independent living and other stakeholder...

  14. Evaluation of Community Health Education Workshops among Chinese Older Adults in Chicago: A Community-Based Participatory Research Approach

    ERIC Educational Resources Information Center

    Dong, Xinqi; Li, Yawen; Chen, Ruijia; Chang, E-Shien; Simon, Melissa

    2013-01-01

    Background: Health education is one of the proven ways to improve knowledge and change health attitudes and behaviors. This study is intended to assess the effectiveness of five health workshops in a Chinese community, focusing on depression, elder abuse, nutrition, breast cancer and stroke. Methods: A community-based participatory research

  15. 78 FR 20924 - Center for Biologics Evaluation and Research eSubmitter Pilot Evaluation Program for...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-04-08

    .... Background CBER regulates certain biological products and is committed to advancing the public health through... Commissioner for Policy. BILLING CODE 4160-01-P ... SERVICES Food and Drug Administration Center for Biologics Evaluation and Research eSubmitter...

  16. Department of Biochemistry & Molecular Biology Strategic Planning Phase III Part II: Research and Graduate Education

    E-print Network

    Schweik, Charles M.

    1 Department of Biochemistry & Molecular Biology Strategic Planning Phase The Department of Biochemistry and Molecular Biology (BMB) seeks to expand its areas of strength in research covering cellular biochemistry in humans, plants

  17. Consideration of Sex as a Biological Variable in NIH-funded Research1 Purpose and Background

    E-print Network

    Bandettini, Peter A.

    1 Consideration of Sex as a Biological Variable in NIH-funded Research depends on the consideration of key biological variables, such as sex. NIH has of the sex of animal subjects; this is particularly problematic in those studies

  18. Nuclear physics detector technology applied to plant biology research

    NASA Astrophysics Data System (ADS)

    Weisenberger, A. G.; Kross, B.; Lee, S. J.; McKisson, J.; McKisson, J. E.; Xi, W.; Zorn, C.; Howell, C. R.; Crowell, A. S.; Reid, C. D.; Smith, M.

    2013-08-01

    The ability to detect the emissions of radioactive isotopes through radioactive decay (e.g. beta particles, x-rays and gamma-rays) has been used for over 80 years as a tracer method for studying natural phenomena. More recently a positron emitting radioisotope of carbon: 11C has been utilized as a 11CO2 tracer for plant ecophysiology research. Because of its ease of incorporation into the plant via photosynthesis, the 11CO2 radiotracer is a powerful tool for use in plant biology research. Positron emission tomography (PET) imaging has been used to study carbon transport in live plants using 11CO2. Presently there are several groups developing and using new PET instrumentation for plant based studies. Thomas Jefferson National Accelerator Facility (Jefferson Lab) in collaboration with the Duke University Phytotron and the Triangle Universities Nuclear Laboratory (TUNL) is involved in PET detector development for plant imaging utilizing technologies developed for nuclear physics research. The latest developments of the use of a LYSO scintillator based PET detector system for 11CO2 tracer studies in plants will be briefly outlined.

  19. Accelerating Cancer Systems Biology Research through Semantic Web Technology

    PubMed Central

    Wang, Zhihui; Sagotsky, Jonathan; Taylor, Thomas; Shironoshita, Patrick; Deisboeck, Thomas S.

    2012-01-01

    Cancer systems biology is an interdisciplinary, rapidly expanding research field in which collaborations are a critical means to advance the field. Yet the prevalent database technologies often isolate data rather than making it easily accessible. The Semantic Web has the potential to help facilitate web-based collaborative cancer research by presenting data in a manner that is self-descriptive, human and machine readable, and easily sharable. We have created a semantically linked online Digital Model Repository (DMR) for storing, managing, executing, annotating, and sharing computational cancer models. Within the DMR, distributed, multidisciplinary, and inter-organizational teams can collaborate on projects, without forfeiting intellectual property. This is achieved by the introduction of a new stakeholder to the collaboration workflow, the institutional licensing officer, part of the Technology Transfer Office. Furthermore, the DMR has achieved silver level compatibility with the National Cancer Institute’s caBIG®, so users can not only interact with the DMR through a web browser but also through a semantically annotated and secure web service. We also discuss the technology behind the DMR leveraging the Semantic Web, ontologies, and grid computing to provide secure inter-institutional collaboration on cancer modeling projects, online grid-based execution of shared models, and the collaboration workflow protecting researchers’ intellectual property. PMID:23188758

  20. Accelerating cancer systems biology research through Semantic Web technology.

    PubMed

    Wang, Zhihui; Sagotsky, Jonathan; Taylor, Thomas; Shironoshita, Patrick; Deisboeck, Thomas S

    2013-01-01

    Cancer systems biology is an interdisciplinary, rapidly expanding research field in which collaborations are a critical means to advance the field. Yet the prevalent database technologies often isolate data rather than making it easily accessible. The Semantic Web has the potential to help facilitate web-based collaborative cancer research by presenting data in a manner that is self-descriptive, human and machine readable, and easily sharable. We have created a semantically linked online Digital Model Repository (DMR) for storing, managing, executing, annotating, and sharing computational cancer models. Within the DMR, distributed, multidisciplinary, and inter-organizational teams can collaborate on projects, without forfeiting intellectual property. This is achieved by the introduction of a new stakeholder to the collaboration workflow, the institutional licensing officer, part of the Technology Transfer Office. Furthermore, the DMR has achieved silver level compatibility with the National Cancer Institute's caBIG, so users can interact with the DMR not only through a web browser but also through a semantically annotated and secure web service. We also discuss the technology behind the DMR leveraging the Semantic Web, ontologies, and grid computing to provide secure inter-institutional collaboration on cancer modeling projects, online grid-based execution of shared models, and the collaboration workflow protecting researchers' intellectual property. PMID:23188758

  1. Perceptions of community-based participatory research in the delta nutrition intervention research initiative:an academic perspective

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Lower Mississippi Delta Nutrition Intervention Research Initiative (Delta NIRI) is an academic-community partnership between seven academic institutions and three communities in Mississippi, Arkansas, and Louisiana. A range of community-based participatory methods have been employed to develop susta...

  2. How the confocal laser scanning microscope entered biological research.

    PubMed

    Amos, W B; White, J G

    2003-09-01

    A history of the early development of the confocal laser scanning microscope in the MRC Laboratory of Molecular Biology in Cambridge is presented. The rapid uptake of this technology is explained by the wide use of fluorescence in the 80s. The key innovations were the scanning of the light beam over the specimen rather than vice-versa and a high magnification at the level of the detector, allowing the use of a macroscopic iris. These were followed by an achromatic all-reflective relay system, a non-confocal transmission detector and novel software for control and basic image processing. This design was commercialized successfully and has been produced and developed over 17 years, surviving challenges from alternative technologies, including solid-state scanning systems. Lessons are pointed out from the unusual nature of the original funding and research environment. Attention is drawn to the slow adoption of the instrument in diagnostic medicine, despite promising applications. PMID:14519550

  3. Bringing Community and Academic Scholars Together to Facilitate and Conduct Authentic Community Based Participatory Research: Project UNITED.

    PubMed

    Lewis, Dwight; Yerby, Lea; Tucker, Melanie; Foster, Pamela Payne; Hamilton, Kara C; Fifolt, Matthew M; Hites, Lisle; Shreves, Mary Katherine; Page, Susan B; Bissell, Kimberly L; Lucky, Felecia L; Higginbotham, John C

    2015-01-01

    Cultural competency, trust, and research literacy can affect the planning and implementation of sustainable community-based participatory research (CBPR). The purpose of this manuscript is to highlight: (1) the development of a CBPR pilot grant request for application; and (2) a comprehensive program supporting CBPR obesity-related grant proposals facilitated by activities designed to promote scholarly collaborations between academic researchers and the community. After a competitive application process, academic researchers and non-academic community leaders were selected to participate in activities where the final culminating project was the submission of a collaborative obesity-related CBPR grant application. Teams were comprised of a mix of academic researchers and non-academic community leaders, and each team submitted an application addressing obesity-disparities among rural predominantly African American communities in the US Deep South. Among four collaborative teams, three (75%) successfully submitted a grant application to fund an intervention addressing rural and minority obesity disparities. Among the three submitted grant applications, one was successfully funded by an internal CBPR grant, and another was funded by an institutional seed funding grant. Preliminary findings suggest that the collaborative activities were successful in developing productive scholarly relationships between researchers and community leaders. Future research will seek to understand the full-context of our findings. PMID:26703675

  4. Getting started in CBPR- Lessons in building community partnerships for new researchers

    PubMed Central

    D’Alonzo, Karen T.

    2011-01-01

    Background There is a growing interest in community based participatory research (CBPR) methods to address issues of health disparities. Although the success of CBPR is dependent upon the formation of community-researcher partnerships, new researchers as well as seasoned investigators who are transitioning to CBPR often lack the skills needed to develop and maintain these partnerships. Objectives The purpose of the article is to discuss the competencies needed by new researchers to form successful CBPR partnerships. Methods and Lessons learned The author presents a series of strategic steps that are useful in establishing academic-community partnerships and in initiating, maintaining and sustaining CBPR projects. These steps include suggestions regarding community engagement, selection of Community Advisory Board members, outreach, the community’s role in problem identification, selection of research methodologies, considerations related to the community setting, need for flexibility and patience, “insider vs. outsider” conflicts, commitment and training issues, timing concerns for tenure-track faculty and the process of community empowerment. Conclusions CBPR is both rewarding and time consuming, for both the researcher and members of the community. Given its promise to address health disparities, it is imperative that researchers acquire the skills needed to develop and cultivate durable community-researcher partnerships. PMID:21059145

  5. Using Community Mapping To Enhance Child Development. Research in Focus.

    ERIC Educational Resources Information Center

    Connor, Sarah

    2001-01-01

    Community mapping is a relatively new technique using Geographic Information Systems (GIS) and scientific software to generate visual representations of community characteristics. In North York (Ontario), community mapping provided information about the influence of community resources, including educational, recreational, cultural, health, and…

  6. The 2015 Nucleic Acids Research Database Issue and Molecular Biology Database Collection

    PubMed Central

    Galperin, Michael Y.; Rigden, Daniel J.; Fernández-Suárez, Xosé M.

    2015-01-01

    The 2015 Nucleic Acids Research Database Issue contains 172 papers that include descriptions of 56 new molecular biology databases, and updates on 115 databases whose descriptions have been previously published in NAR or other journals. Following the classification that has been introduced last year in order to simplify navigation of the entire issue, these articles are divided into eight subject categories. This year's highlights include RNAcentral, an international community portal to various databases on noncoding RNA; ValidatorDB, a validation database for protein structures and their ligands; SASBDB, a primary repository for small-angle scattering data of various macromolecular complexes; MoonProt, a database of ‘moonlighting’ proteins, and two new databases of protein–protein and other macromolecular complexes, ComPPI and the Complex Portal. This issue also includes an unusually high number of cancer-related databases and other databases dedicated to genomic basics of disease and potential drugs and drug targets. The size of NAR online Molecular Biology Database Collection, http://www.oxfordjournals.org/nar/database/a/, remained approximately the same, following the addition of 74 new resources and removal of 77 obsolete web sites. The entire Database Issue is freely available online on the Nucleic Acids Research web site (http://nar.oxfordjournals.org/). PMID:25593347

  7. Research partnerships with local communities: two case studies from Papua New Guinea and Australia

    NASA Astrophysics Data System (ADS)

    Almany, G. R.; Hamilton, R. J.; Williamson, D. H.; Evans, R. D.; Jones, G. P.; Matawai, M.; Potuku, T.; Rhodes, K. L.; Russ, G. R.; Sawynok, B.

    2010-09-01

    Partnerships between scientists and local communities can increase research capacity and data delivery while improving management effectiveness through enhanced community participation. To encourage such collaboration, this study demonstrates how these partnerships can be formed, drawing on two case studies in coral reef ecosystems in very different social settings (Papua New Guinea and Australia). In each case, steps towards successfully engaging communities in research were similar. These included: (1) early engagement by collaborating organizations to build trust, (2) ensuring scientific questions have direct relevance to the community, (3) providing appropriate incentives for participation, and (4) clear and open communication. Community participants engaged in a variety of research activities, including locating and capturing fishes, collecting and recording data (weight, length and sex), applying external tags, and removing otoliths (ear bones) for ageing and elemental analysis. Research partnerships with communities enhanced research capacity, reduced costs and, perhaps more importantly, improved the likelihood of long-term community support for marine protected areas (MPAs).

  8. Ethics, emergencies and Ebola clinical trials: the role of governments and communities in offshored research

    PubMed Central

    Folayan, Morenike Oluwatoyin; Peterson, Kristin; Kombe, Frances

    2015-01-01

    The Ebola Virus Disease (EVD) in West Africa has stimulated investments in EVD research. While these research efforts are most welcome, we are concerned about the potential to ignore effective community ethics engagement programmes and critical government regulatory agencies in light of the urgency to conduct clinical trials for EVD therapies and vaccines. We discuss the reasons why community engagement with various research stakeholders is essential, how community engagement should be conducted, and the potential consequences of failing to engage both communities and regulatory agencies by drawing on past experiences in the field of HIV research. We highlight the importance of a) capacity building to enable local researchers design and implement EVD research for future epidemics, b) the need to support community research literacy, and c) the need to build the competency of research regulatory agencies on the continent to address EVD therapy and vaccine research.

  9. STRUCTURAL BIOLOGY AND MOLECULAR MEDICINE RESEARCH PROGRAM (LSBMM)

    SciTech Connect

    Eisenberg, David S.

    2008-07-15

    The UCLA-DOE Institute of Genomics and Proteomics is an organized research unit of the University of California, sponsored by the Department of Energy through the mechanism of a Cooperative Agreement. Today the Institute consists of 10 Principal Investigators and 7 Associate Members, developing and applying technologies to promote the biological and environmental missions of the Department of Energy, and 5 Core Technology Centers to sustain this work. The focus is on understanding genomes, pathways and molecular machines in organisms of interest to DOE, with special emphasis on developing enabling technologies. Since it was founded in 1947, the UCLA-DOE Institute has adapted its mission to the research needs of DOE and its progenitor agencies as these research needs have changed. The Institute started as the AEC Laboratory of Nuclear Medicine, directed by Stafford Warren, who later became the founding Dean of the UCLA School of Medicine. In this sense, the entire UCLA medical center grew out of the precursor of our Institute. In 1963, the mission of the Institute was expanded into environmental studies by Director Ray Lunt. I became the third director in 1993, and in close consultation with David Galas and John Wooley of DOE, shifted the mission of the Institute towards genomics and proteomics. Since 1993, the Principal Investigators and Core Technology Centers are entirely new, and the Institute has separated from its former division concerned with PET imaging. The UCLA-DOE Institute shares the space of Boyer Hall with the Molecular Biology Institute, and assumes responsibility for the operation of the main core facilities. Fig. 1 gives the organizational chart of the Institute. Some of the benefits to the public of research carried out at the UCLA-DOE Institute include the following: The development of publicly accessible, web-based databases, including the Database of Protein Interactions, and the ProLinks database of genomicly inferred protein function linkages. The development of publicly accessible, web-based servers, including the HOTPATCH server, the ProKnow Server and the SAVEs server. All of these are accessible from the home page of the Institute. Advancing the science of bioenergy, in the laboratories of the Principal Investigators of the Institute, including the laboratories of Shimon Weiss, James Liao, James Bowie, Todd Yeates, Rob Gunsalus.

  10. Microgravity research in plant biological systems: Realizing the potential of molecular biology

    NASA Technical Reports Server (NTRS)

    Lewis, Norman G.; Ryan, Clarence A.

    1993-01-01

    The sole all-pervasive feature of the environment that has helped shape, through evolution, all life on Earth is gravity. The near weightlessness of the Space Station Freedom space environment allows gravitational effects to be essentially uncoupled, thus providing an unprecedented opportunity to manipulate, systematically dissect, study, and exploit the role of gravity in the growth and development of all life forms. New and exciting opportunities are now available to utilize molecular biological and biochemical approaches to study the effects of microgravity on living organisms. By careful experimentation, we can determine how gravity perception occurs, how the resulting signals are produced and transduced, and how or if tissue-specific differences in gene expression occur. Microgravity research can provide unique new approaches to further our basic understanding of development and metabolic processes of cells and organisms, and to further the application of this new knowledge for the betterment of humankind.

  11. A comparative study of the bacterial community in denitrifying and traditional enhanced biological phosphorus removal processes.

    PubMed

    Lv, Xiao-Mei; Shao, Ming-Fei; Li, Chao-Lin; Li, Ji; Gao, Xin-Lei; Sun, Fei-Yun

    2014-09-17

    Denitrifying phosphorus removal is an attractive wastewater treatment process due to its reduced carbon source demand and sludge minimization potential. Two lab-scale sequencing batch reactors (SBRs) were operated in alternating anaerobic-anoxic (A-A) or anaerobic-oxic (A-O) conditions to achieve denitrifying enhanced biological phosphate removal (EBPR) and traditional EBPR. No significant differences were observed in phosphorus removal efficiencies between A-A SBR and A-O SBR, with phosphorus removal rates being 87.9% and 89.0% respectively. The community structures in denitrifying and traditional EBPR processes were evaluated by high-throughput sequencing of the PCR-amplified partial 16S rRNA genes from each sludge. The results obtained showed that the bacterial community was more diverse in A-O sludge than in A-A sludge. Taxonomy and ?-diversity analyses indicated that a significant shift occurred in the dominant microbial community in A-A sludge compared with the seed sludge during the whole acclimation phase, while a slight fluctuation was observed in the abundance of the major taxonomies in A-O sludge. One Dechloromonas-related OTU outside the 4 known Candidatus "Accumulibacter" clades was detected as the main OTU in A-A sludge at the stationary operation, while Candidatus "Accumulibacter" dominated in A-O sludge. PMID:24964811

  12. Cell Science and Cell Biology Research at MSFC: Summary

    NASA Technical Reports Server (NTRS)

    2003-01-01

    The common theme of these research programs is that they investigate regulation of gene expression in cells, and ultimately gene expression is controlled by the macromolecular interactions between regulatory proteins and DNA. The NASA Critical Path Roadmap identifies Muscle Alterations and Atrophy and Radiation Effects as Very Serious Risks and Severe Risks, respectively, in long term space flights. The specific problem addressed by Dr. Young's research ("Skeletal Muscle Atrophy and Muscle Cell Signaling") is that skeletal muscle loss in space cannot be prevented by vigorous exercise. Aerobic skeletal muscles (i.e., red muscles) undergo the most extensive atrophy during long-term space flight. Of the many different potential avenues for preventing muscle atrophy, Dr. Young has chosen to study the beta-adrenergic receptor (betaAR) pathway. The reason for this choice is that a family of compounds called betaAR agonists will preferentially cause an increase in muscle mass of aerobic muscles (i.e., red muscle) in animals, potentially providing a specific pharmacological solution to muscle loss in microgravity. In addition, muscle atrophy is a widespread medical problem in neuromuscular diseases, spinal cord injury, lack of exercise, aging, and any disease requiring prolonged bedridden status. Skeletal muscle cells in cell culture are utilized as a model system to study this problem. Dr. Richmond's research ("Radiation & Cancer Biology of Mammary Cells in Culture") is directed toward developing a laboratory model for use in risk assessment of cancer caused by space radiation. This research is unique because a human model will be developed utilizing human mammary cells that are highly susceptible to tumor development. This approach is preferential over using animal cells because of problems in comparing radiation-induced cancers between humans and animals.

  13. Avian community response to lowland tropical rainforest isolation: 40 years of change at La Selva Biological Station, Costa Rica.

    PubMed

    Sigel, Bryan J; Sherry, Thomas W; Young, Bruce E

    2006-02-01

    Since 1960, most of the forest surrounding the La Selva Biological Station, an intensively studied tropical research facility in Costa Rica, has been converted to agricultural uses. We used quantitative censuses and analysis of previously published categorical abundances to assess changes in the bird community, and we evaluated potential causes of species-specific changes by assessing their association with habitat, diet, participation in mixed-species flocks, and nest type. Approximately the same percentage of species increased as decreased in abundance from 1960 to 1999 (10-20% of all species, depending on method of assessment). Diet was the single most important trait associated with declining species. At least 50% of the species that declined have insectivorous diets. Use of forest habitat and participation in mixed-species flocks were also significant factors associated with declines, but nest type was unrelated to change in abundance. The species that increased in abundance tended to occur in open habitats and have omnivorous diets. These results reinforce the importance of several population risk factors associated with tropical understory insectivory and mixed-species flocking: patchy spatial distribution, low population density, large home range, and dietary specialization. La Selva's protected area (1611 ha), despite a forested connection on one boundary with a higher elevation national park, is apparently too small to maintain at least one major guild (understory insectivores). This first quantitative assessment of bird community change at La Selva highlights the need to intensify study of the mechanisms and consequences of biological diversity change in tropical forest fragments. PMID:16909664

  14. Community Participation in Health Systems Research: A Systematic Review Assessing the State of Research, the Nature of Interventions Involved and the Features of Engagement with Communities

    PubMed Central

    George, Asha S.; Mehra, Vrinda; Scott, Kerry; Sriram, Veena

    2015-01-01

    Background Community participation is a major principle of people centered health systems, with considerable research highlighting its intrinsic value and strategic importance. Existing reviews largely focus on the effectiveness of community participation with less attention to how community participation is supported in health systems intervention research. Objective To explore the extent, nature and quality of community participation in health systems intervention research in low- and middle-income countries. Methodology We searched for peer-reviewed, English language literature published between January 2000 and May 2012 through four electronic databases. Search terms combined the concepts of community, capability/participation, health systems research and low- and middle-income countries. The initial search yielded 3,092 articles, of which 260 articles with more than nominal community participation were identified and included. We further excluded 104 articles due to lower levels of community participation across the research cycle and poor description of the process of community participation. Out of the remaining 160 articles with rich community participation, we further examined 64 articles focused on service delivery and governance within health systems research. Results Most articles were led by authors in high income countries and many did not consistently list critical aspects of study quality. Articles were most likely to describe community participation in health promotion interventions (78%, 202/260), even though they were less participatory than other health systems areas. Community involvement in governance and supply chain management was less common (12%, 30/260 and 9%, 24/260 respectively), but more participatory. Articles cut across all health conditions and varied by scale and duration, with those that were implemented at national scale or over more than five years being mainstreamed by government. Most articles detailed improvements in service availability, accessibility and acceptability, with fewer efforts focused on quality, and few designs able to measure impact on health outcomes. With regards to participation, most articles supported community’s in implementing interventions (95%, n = 247/260), in contrast to involving communities in identifying and defining problems (18%, n = 46/260). Many articles did not discuss who in communities participated, with just over a half of the articles disaggregating any information by sex. Articles were largely under theorized, and only five mentioned power or control. Majority of the articles (57/64) described community participation processes as being collaborative with fewer describing either community mobilization or community empowerment. Intrinsic individual motivations, community-level trust, strong external linkages, and supportive institutional processes facilitated community participation, while lack of training, interest and information, along with weak financial sustainability were challenges. Supportive contextual factors included decentralization reforms and engagement with social movements. Conclusion Despite positive examples, community participation in health systems interventions was variable, with few being truly community directed. Future research should more thoroughly engage with community participation theory, recognize the power relations inherent in community participation, and be more realistic as to how much communities can participate and cognizant of who decides that. PMID:26496124

  15. Preparing the "New" Biologist of the Future: Student Research at the Interface of Mathematics and Biology

    ERIC Educational Resources Information Center

    Duncan, Sarah I.; Bishop, Pamela; Lenhart, Suzanne

    2010-01-01

    We describe a unique Research Experience for Undergraduates and Research Experience for Veterinary students summer program at the National Institute for Mathematical and Biological Synthesis on the campus of the University of Tennessee, Knoxville. The program focused on interdisciplinary research at the interface of biology and mathematics.…

  16. Community Based Research Network: Opportunities for Coordination of Care, Public Health Surveillance, and Farmworker Research

    PubMed Central

    Cooper, Sharon P.; Heyer, Nicholas; Shipp, Eva M.; Ryder, E. Roberta; Hendrikson, Edward; Socias, Christina M; del Junco, Deborah J.; Valerio, Melissa; Partida, Sylvia

    2014-01-01

    Introduction: The lack of aggregated longitudinal health data on farmworkers has severely limited opportunities to conduct research to improve their health status. To correct this problem, we have created the infrastructure necessary to develop and maintain a national Research Data Repository of migrant and seasonal farmworker patients and other community members receiving medical care from Community and Migrant Health Centers (C/MHCs). Project specific research databases can be easily extracted from this repository. Methods: The Community Based Research Network (CBRN) has securely imported and merged electronic health records (EHRs) data from five geographically dispersed C/MHCs. To demonstrate the effectiveness of our data aggregation methodologies, we also conducted a small pilot study using clinical, laboratory and demographic data from the CBRN Data Repository from two initial C/MHCs to evaluate HbA1c management. Results: Overall, there were 67,878 total patients (2,858 farmworkers) that were seen by two C/MHCs from January to August 2013. A total of 94,189 encounters were captured and all could be linked to a unique patient. HbA1c values decreased as the number of tests or intensity of testing increased. Conclusion: This project will inform the foundation for an expanding collection of C/MHC data for use by clinicians for medical care coordination, by clinics to assess quality of care, by public health agencies for surveillance, and by researchers under Institutional Review Board (IRB) oversight to advance understanding of the needs and capacity of the migrant and seasonal farmworker population and the health centers that serve them. Approved researchers can request data that constitute a Limited Data Set from the CBRN Data Repository to establish a specific research database for their project. PMID:25379130

  17. Pedagogies on the Edge: Researching Complex Practice in Youth and Adult Community Education

    ERIC Educational Resources Information Center

    Sanguinetti, Jill; Waterhouse, Peter; Maunders, David

    2005-01-01

    This research arose from our involvements in adults and community education, adult literacy, youth issues, and in researching the new movement in Australia for the inclusion of "generic skills" in education and training curriculum. We recruited twenty-two practitioners in Adult and Community Education (ACE) in a participatory action research

  18. Becoming Agents of Change through Participation in a Teacher-Driven Professional Research Community

    E-print Network

    Colorado at Boulder, University of

    focusing on STEM education research. In this community, teachers became increasingly responsibleBecoming Agents of Change through Participation in a Teacher-Driven Professional Research Community experiences for themselves, such as engaging in lesson-sharing and developing their own education research

  19. Universities, Civil Society and the Global Agenda of Community-Engaged Research

    ERIC Educational Resources Information Center

    Bourke, Alan

    2013-01-01

    This article explores a key point of tension in contemporary discussions of community-university research engagement. Two perspectives are discussed. The first suggests that changes in the nature and structure of research have helped create democratic research spaces and opportunities within the university for communities. In this emerging…

  20. In Pursuit of Ethical Research: Studying Hybrid Communities Using Online and Face-to-Face Communications

    ERIC Educational Resources Information Center

    Busher, Hugh; James, Nalita

    2015-01-01

    Hybrid communities using online and face-to-face communications to construct their practices are increasingly part of everyday life amongst people who have easy access to the internet. Researching these communities raises a number of challenges for researchers in the pursuit of ethical research. The paper begins by exploring what is understood by…

  1. Teaching Molecular Biological Techniques in a Research Content

    ERIC Educational Resources Information Center

    Stiller, John W.; Coggins, T. Chad

    2006-01-01

    Molecular biological methods, such as the polymerase chain reaction (PCR) and gel electrophoresis, are now commonly taught to students in introductory biology courses at the college and even high school levels. This often includes hands-on experience with one or more molecular techniques as part of a general biology laboratory. To assure that most…

  2. Characterization of an orthovoltage biological irradiator used for radiobiological research

    PubMed Central

    Azimi, Rezvan; Alaei, Parham; Spezi, Emiliano; Hui, Susanta K.

    2015-01-01

    Orthovoltage irradiators are routinely used to irradiate specimens and small animals in biological research. There are several reports on the characteristics of these units for small field irradiations. However, there is limited knowledge about use of these units for large fields, which are essential for emerging large-field irregular shape irradiations, namely total marrow irradiation used as a conditioning regimen for hematological malignancies. This work describes characterization of a self-contained Orthovoltage biological irradiator for large fields using measurements and Monte Carlo simulations that could be used to compute the dose for in vivo or in vitro studies for large-field irradiation using this or a similar unit. Percentage depth dose, profiles, scatter factors, and half-value layers were measured and analyzed. A Monte Carlo model of the unit was created and used to generate depth dose and profiles, as well as scatter factors. An ion chamber array was also used for profile measurements of flatness and symmetry. The output was determined according to AAPM Task Group 61 guidelines. The depth dose measurements compare well with published data for similar beams. The Monte Carlo–generated depth dose and profiles match our measured doses to within 2%. Scatter factor measurements indicate gradual variation of these factors with field size. Dose rate measured by placing the ion chamber atop the unit's steel plate or solid water indicate enhanced readings of 5 to 28% compared with those measured in air. The stability of output over a 5-year period is within 2% of the 5-year average. PMID:25694476

  3. RESEARCH Open Access Bacterial communities on classroom surfaces vary

    E-print Network

    Bohannan, Brendan

    composition. Conclusions: Our results indicate that human-associated microbial communities can be transferred environment, Microbial ecology, Indoor microbiology, Lactobacillus Background In the developed world, humans knowledge regarding the ecological processes that drive microbial community assembly indoors, nor do we

  4. Research: Is It a Missing Link in Informing Policy and Practice in Community Colleges?

    ERIC Educational Resources Information Center

    Laden, Berta Vigil

    1996-01-01

    Reviews literature on the gap between research and policymaking in the community college. Describes a pilot study focusing on how administrators define research, what research informs their decisions, and what research they would find most relevant. Suggests that collaborative research involving members of the college and outside researchers would…

  5. The adaptation and implementation of a community-based participatory research curriculum to build tribal research capacity.

    PubMed

    Jernigan, Valarie Blue Bird; Jacob, Tvli; Styne, Dennis

    2015-07-01

    We studied community-based participatory research in American Indian/Alaska Native communities. We have presented a case study describing a community-clinic-academic partnership with the goal of building tribal capacity and infrastructure to conduct health disparities research. The 2-year intensive training was guided by the framework of an evidence- and community-based participatory research curriculum, adapted and implemented with practice-based data collection activities and seminars to address issues specific to community-based participatory research with sovereign tribal nations. The initiative highlighted important challenges and opportunities in transdisciplinary partnerships; identified gaps in conducting health disparities research at the tribal, clinical, and university levels; and led to important policy change initiatives in all the partner settings. PMID:25905848

  6. Pharmacogenetic research in partnership with American Indian and Alaska Native communities

    PubMed Central

    Woodahl, Erica L; Lesko, Lawrence J; Hopkins, Scarlett; Robinson, Renee F; Thummel, Kenneth E; Burke, Wylie

    2014-01-01

    Pharmacogenetics is a subset of personalized medicine that applies knowledge about genetic variation in gene–drug pairs to help guide optimal dosing. There is a lack of data, however, about pharmacogenetic variation in underserved populations. One strategy for increasing participation of underserved populations in pharmacogenetic research is to include communities in the research process. We have established academic–community partnerships with American Indian and Alaska Native people living in Alaska and Montana to study pharmacogenetics. Key features of the partnership include community oversight of the project, research objectives that address community health priorities, and bidirectional learning that builds capacity in both the community and the research team. Engaging the community as coresearchers can help build trust to advance pharmacogenetic research objectives. PMID:25141898

  7. Blended Hydrometeorological Products for the Research and Operational Communities

    NASA Astrophysics Data System (ADS)

    Kidder, S. Q.; Vonder Haar, T. H.; Forsythe, J.

    2013-12-01

    With advances in environmental parameter retrieval algorithms and their use of a wide array of satellite instruments, constantly changing views of Earth are possible. Enabling users to reap the benefits of this data requires good communication about the products. More and more, new near-realtime blended multisensor satellite products are becoming available to the weather forecaster, who must quickly decide whether the product is helpful or not. Research users of blended products can take more time to explore the suitability of these data for their applications, but communication and guidance from the data provider is essential. An effort under NASA's Making Earth Science Data Records for Use in Research Environments (MEaSUREs) program has reprocessed and extended the NASA Water Vapor Project (NVAP) dataset, which now includes data from 1988-2009. The new dataset is named NVAP-M and includes global grids of both total and layered precipitable water vapor, as well as data source codes for each grid box. NVAP-M is distributed to the weather and climate research community via the NASA Langley Atmospheric Science Data Center. The global (land and ocean) NVAP-M dataset features different product types designed to fit a variety of user needs on a variety of time scales, from weather case studies to studies of climate change and trends. In particular, a three-track approach focused on weather, climate and ocean applications was chosen. Challenges and lessons learned in communicating with the diverse user community for NVAP-M (e.g., hydrologists, weather and climate scientists, epidemiologists) will be presented. Close relatives of NVAP-M are the NOAA Operational Blended Total Precipitable Water and Blended Rain Rate products. These products are available hourly in near-real time to National Weather Service forecast offices and are valuable for precipitation analysis and forecasting. They are created from a composite of passive microwave instruments on board typically six polar orbiting satellites. The types of comments from users, how they are trained to use the blended products, and the process for user feedback and product modifications will be discussed.

  8. Community Geography as a Model for International Research Experiences in Study Abroad Programs

    ERIC Educational Resources Information Center

    Hawthorne, Timothy L.; Atchison, Christopher; LangBruttig, Artis

    2014-01-01

    Collaborative engagement with local residents and organizations is often cited as one of the most valuable aspects of community-based research integration in classroom settings. However, little has been written on the impact of community engagement in international study abroad programs. We explore the use of community geography in Belize to…

  9. COMMUNITY ECOLOGY -ORIGINAL RESEARCH Geographic variation in salt marsh structure and function

    E-print Network

    Pennings, Steven C.

    COMMUNITY ECOLOGY - ORIGINAL RESEARCH Geographic variation in salt marsh structure and function and function of salt marsh communities along the Atlantic and Gulf coasts of the United States. Focusing on the arthropod community in the dominant salt marsh plant Spartina alterniflora, we tested two hypotheses: first

  10. An Interactive and Contextual Model of Community-University Collaborations for Research and Action

    ERIC Educational Resources Information Center

    Suarez-Balcazar, Yolanda; Harper, Gary W.; Lewis, Rhonda

    2005-01-01

    Community-university partnerships for research and action are at the heart of many fields in the social sciences including public health, urban planning, education, and community psychology. These partnerships involve individuals from different backgrounds and disciplines working together to address social issues of importance to the community.…

  11. Edinburgh Research Explorer Characterisation of the wildlife reservoir community for human

    E-print Network

    Schnaufer, Achim

    Edinburgh Research Explorer Characterisation of the wildlife reservoir community for human of the wildlife reservoir community for human and animal trypanosomiasis in the Luangwa Valley, Zambia' PLo date: 05. Jul. 2015 #12;Characterisation of the Wildlife Reservoir Community for Human and Animal

  12. Changing the Face of Research: Tribal Colleges Address Community Well-Being

    ERIC Educational Resources Information Center

    Bird, Dorreen Yellow

    2007-01-01

    The article focuses on public health research projects which are being conducted at two Indian colleges; Candeska Cikana Community College in Fort Trotten, North Dakota and Turtle Mountain Community College in Belcourt, North Dakota. Candeska Community College was given a 6 year grant funded by the National Institutes of Diabetes, Digestive and…

  13. Community-University Research Partnerships for Workers' and Environmental Health in Campinas Brazil

    ERIC Educational Resources Information Center

    Monteiro, Maria Ines; Siqueira, Carlos Eduardo; Filho, Heleno Rodrigues Correa

    2011-01-01

    Three partnerships between the University of Campinas, community, and public health care services are discussed in this article. A theoretical framework underpins the critical reviews of their accomplishments following criteria proposed by scholars of community-university partnerships and community-based participatory research. The article…

  14. Community-driven research on environmental sources of H. pylori infection in arctic Canada

    PubMed Central

    Hastings, Emily V; Yasui, Yutaka; Hanington, Patrick; Goodman, Karen J; Working Group, The CANHelp

    2014-01-01

    The role of environmental reservoirs in H. pylori transmission remains uncertain due to technical difficulties in detecting living organisms in sources outside the stomach. Residents of some Canadian Arctic communities worry that contamination of the natural environment is responsible for the high prevalence of H. pylori infection in the region. This analysis aims to estimate associations between exposure to potential environmental sources of biological contamination and prevalence of H. pylori infection in Arctic Canada. Using data from 3 community-driven H. pylori projects in the Northwest and Yukon Territories, we estimated effects of environmental exposures on H. pylori prevalence, using odds ratios (OR) and 95% confidence intervals (CI) from multilevel logistic regression models to adjust for household and community effects. Investigated exposures include: untreated drinking water; livestock; dogs; cats; mice or mouse droppings in the home; cleaning fish or game. Our analysis did not identify environmental exposures associated clearly with increased H. pylori prevalence, except any exposure to mice or mouse droppings (OR = 4.6, CI = 1.2–18), reported by 11% of participants. Our multilevel models showed H. pylori clustering within households, but environmental exposures accounted for little of this clustering; instead, much of it was accounted for by household composition (especially: having infected household members; number of children). Like the scientific literature on this topic, our results do not clearly implicate or rule out environmental reservoirs of H. pylori; thus, the topic remains a priority for future research. Meanwhile, H. pylori prevention research should seek strategies for reducing direct transmission from person to person. PMID:25483330

  15. Original research article Spatiotemporal complexity of biological invasion in a space-and time-discrete

    E-print Network

    Original research article Spatiotemporal complexity of biological invasion in a space- and time Biological invasions have been attracting considerable atten- tion over the last few decades as they have for theoretical and practical ecology. In a somewhat more general context, biological invasion is a factor related

  16. NORTHERN CALIFORNIA ENTOMOLOGY SOCIETY Dr. Harry H. Laidlaw, Jr., Honey Bee Research Facility (Bee Biology)

    E-print Network

    Ishida, Yuko

    NORTHERN CALIFORNIA ENTOMOLOGY SOCIETY Dr. Harry H. Laidlaw, Jr., Honey Bee Research Facility (Bee Biology) Bee Biology Road, UC Davis Campus From the east: Take I-80 through Davis to the Hwy 113 North on Hopkins Road. Proceed south on Hopkins to the end of the farm field on the left. Turn left on Bee Biology

  17. Research Lasers and Air Traffic Safety: Issues, Concerns and Responsibilities of the Research Community

    NASA Technical Reports Server (NTRS)

    Nessler, Phillip J., Jr.

    1998-01-01

    The subject of outdoor use of lasers relative to air traffic has become a diverse and dynamic topic. During the past several decades, the use of lasers in outdoor research activities have increased significantly. Increases in the outdoor use of lasers and increases in air traffic densities have changed the levels of risk involved. To date there have been no documented incidents of air traffic interference from research lasers; however, incidents involving display lasers have shown a marked increase. As a result of the national response to these incidents, new concerns over lasers have arisen. Through the efforts of the SAE G-10T Laser Safety Hazards Subcommittee and the ANSI Z136.6 development committee, potential detrimental effects to air traffic beyond the traditional eye damage concerns have been identified. An increased emphasis from the Federal Aviation Administration (FAA), the Center for Devices and Radiological Hazards (CDRH), and the National Transportation Safety Board (NTSB) along with increased concern by the public have resulted in focused scrutiny of potential hazards presented by lasers. The research community needs to rethink the traditional methods of risk evaluation and application of protective measures. The best current approach to assure adequate protection of air traffic is the application of viable hazard and risk analysis and the use of validated protective measures. Standards making efforts and regulatory development must be supported by the research community to assure that reasonable measures are developed. Without input, standards and regulations can be developed that are not compatible with the needs of the research community. Finally, support is needed for the continued development and validation of protective measures.

  18. Estimating the effects of habitat and biological interactions in an avian community

    USGS Publications Warehouse

    Dorazio, Robert M.; Connor, Edward F.; Askins, Robert A.

    2015-01-01

    We used repeated sightings of individual birds encountered in community-level surveys to investigate the relative roles of habitat and biological interactions in determining the distribution and abundance of each species. To analyze these data, we developed a multispecies N-mixture model that allowed estimation of both positive and negative correlations between abundances of different species while also estimating the effects of habitat and the effects of errors in detection of each species. Using a combination of single- and multispecies N-mixture modeling, we examined for each species whether our measures of habitat were sufficient to account for the variation in encounter histories of individual birds or whether other habitat variables or interactions with other species needed to be considered. In the community that we studied, habitat appeared to be more influential than biological interactions in determining the distribution and abundance of most avian species. Our results lend support to the hypothesis that abundances of forest specialists are negatively affected by forest fragmentation. Our results also suggest that many species were associated with particular types of vegetation as measured by structural attributes of the forests. The abundances of 6 of the 73 species observed in our study were strongly correlated. These species included large birds (American Crow and Red-winged Blackbird) that forage on the ground in open habitats and small birds (Red-eyed Vireo, House Wren, Hooded Warbler, and Prairie Warbler) that are associated with dense shrub cover. Species abundances were positively correlated within each size group and negatively correlated between groups. Except for the American Crow, which preys on eggs and nestlings of small song birds, none of the other 5 species is known to display direct interactions, so we suspect that the correlations may have been associated with species-specific responses to habitat components not adequately measured by our covariates.

  19. Estimating the Effects of Habitat and Biological Interactions in an Avian Community.

    PubMed

    Dorazio, Robert M; Connor, Edward F; Askins, Robert A

    2015-01-01

    We used repeated sightings of individual birds encountered in community-level surveys to investigate the relative roles of habitat and biological interactions in determining the distribution and abundance of each species. To analyze these data, we developed a multispecies N-mixture model that allowed estimation of both positive and negative correlations between abundances of different species while also estimating the effects of habitat and the effects of errors in detection of each species. Using a combination of single- and multispecies N-mixture modeling, we examined for each species whether our measures of habitat were sufficient to account for the variation in encounter histories of individual birds or whether other habitat variables or interactions with other species needed to be considered. In the community that we studied, habitat appeared to be more influential than biological interactions in determining the distribution and abundance of most avian species. Our results lend support to the hypothesis that abundances of forest specialists are negatively affected by forest fragmentation. Our results also suggest that many species were associated with particular types of vegetation as measured by structural attributes of the forests. The abundances of 6 of the 73 species observed in our study were strongly correlated. These species included large birds (American Crow (Corvus brachyrhynchos) and Red-winged Blackbird (Agelaius phoeniceus)) that forage on the ground in open habitats and small birds (Red-eyed Vireo (Vireo olivaceus), House Wren (Troglodytes aedon), Hooded Warbler (Setophaga citrina), and Prairie Warbler (Setophaga discolor)) that are associated with dense shrub cover. Species abundances were positively correlated within each size group and negatively correlated between groups. Except for the American Crow, which preys on eggs and nestlings of small song birds, none of the other 5 species is known to display direct interactions, so we suspect that the correlations may have been associated with species-specific responses to habitat components not adequately measured by our covariates. PMID:26287671

  20. Estimating the Effects of Habitat and Biological Interactions in an Avian Community

    PubMed Central

    Dorazio, Robert M.; Connor, Edward F.; Askins, Robert A.

    2015-01-01

    We used repeated sightings of individual birds encountered in community-level surveys to investigate the relative roles of habitat and biological interactions in determining the distribution and abundance of each species. To analyze these data, we developed a multispecies N-mixture model that allowed estimation of both positive and negative correlations between abundances of different species while also estimating the effects of habitat and the effects of errors in detection of each species. Using a combination of single- and multispecies N-mixture modeling, we examined for each species whether our measures of habitat were sufficient to account for the variation in encounter histories of individual birds or whether other habitat variables or interactions with other species needed to be considered. In the community that we studied, habitat appeared to be more influential than biological interactions in determining the distribution and abundance of most avian species. Our results lend support to the hypothesis that abundances of forest specialists are negatively affected by forest fragmentation. Our results also suggest that many species were associated with particular types of vegetation as measured by structural attributes of the forests. The abundances of 6 of the 73 species observed in our study were strongly correlated. These species included large birds (American Crow (Corvus brachyrhynchos) and Red-winged Blackbird (Agelaius phoeniceus)) that forage on the ground in open habitats and small birds (Red-eyed Vireo (Vireo olivaceus), House Wren (Troglodytes aedon), Hooded Warbler (Setophaga citrina), and Prairie Warbler (Setophaga discolor)) that are associated with dense shrub cover. Species abundances were positively correlated within each size group and negatively correlated between groups. Except for the American Crow, which preys on eggs and nestlings of small song birds, none of the other 5 species is known to display direct interactions, so we suspect that the correlations may have been associated with species-specific responses to habitat components not adequately measured by our covariates. PMID:26287671

  1. GUI to Facilitate Research on Biological Damage from Radiation

    NASA Technical Reports Server (NTRS)

    Cucinotta, Frances A.; Ponomarev, Artem Lvovich

    2010-01-01

    A graphical-user-interface (GUI) computer program has been developed to facilitate research on the damage caused by highly energetic particles and photons impinging on living organisms. The program brings together, into one computational workspace, computer codes that have been developed over the years, plus codes that will be developed during the foreseeable future, to address diverse aspects of radiation damage. These include codes that implement radiation-track models, codes for biophysical models of breakage of deoxyribonucleic acid (DNA) by radiation, pattern-recognition programs for extracting quantitative information from biological assays, and image-processing programs that aid visualization of DNA breaks. The radiation-track models are based on transport models of interactions of radiation with matter and solution of the Boltzmann transport equation by use of both theoretical and numerical models. The biophysical models of breakage of DNA by radiation include biopolymer coarse-grained and atomistic models of DNA, stochastic- process models of deposition of energy, and Markov-based probabilistic models of placement of double-strand breaks in DNA. The program is designed for use in the NT, 95, 98, 2000, ME, and XP variants of the Windows operating system.

  2. Gross's anatomy: textual politics in science/biology education research

    NASA Astrophysics Data System (ADS)

    Reis, Giuliano

    2009-12-01

    In approaching how the grotesque is—or should be—situated within contemporary science (biology) education practices, Weinstein and Broda undertake a passionate reclaim of an education that is at the same time scientific, critical, and liberatory. However legitimate, their work offers more than they probably could have anticipated: It exemplifies how the textual structure of a research article can be such as to "tip-off" readers about how it is supposed to be understood. In this way, what one learns from reading the manuscript is grounded on the way the authors examine the data presented. That is, the findings are not intrinsic to the materials collected, but constructed within the analyses that precede/follow the account of each one of the four "specimens" reported. Therefore, the present commentary seeks to re-consider the original study from an alternative perspective, one that challenges its seemingly objective (re)construction of facts by placing emphasis on how the text contains instructions for its own interpretation and validation. Ultimately, the purpose here is to describe and discuss the interpretive and validation work that is done by this discursive mechanism of self-appraisal rather than discredit the two authors' initiative.

  3. Modeling the principles of community-based participatory research in a community health assessment conducted by a health foundation.

    PubMed

    Williams, Karen Jaynes; Gail Bray, Patricia; Shapiro-Mendoza, Carrie K; Reisz, Ilana; Peranteau, Jane

    2009-01-01

    The authors discuss strategies used and lessons learned by a health foundation during development of a community health assessment model incorporating community-based participatory research (CBPR) approaches. The assessment model comprises three models incorporating increasing amounts of CPBR principles. Model A combines local-area analysis of quantitative data, qualitative information (key informants, focus groups), and asset mapping. Model B, a community-based participatory model, emphasizes participatory rural appraisal approaches and quantitative assessment using rapid epidemiological assessment. Model C, a modified version of Model B, is financially more sustainable for our needs than Model B. The authors (a) describe origins of these models and illustrate practical applications and (b) explore the lessons learned in their transition from a traditional, nonparticipatory, quantitative approach to participatory approaches to community-health assessment. It is hoped that this article will contribute to the growing body of knowledge of practical aspects of incorporating CBPR approaches into community health assessments. PMID:17652187

  4. Manganese Exposure and Neurocognitive Outcomes in Rural School-Age Children: The Communities Actively Researching Exposure Study (Ohio, USA)

    PubMed Central

    Sucharew, Heidi; Kuhnell, Pierce; Alden, Jody; Barnas, Mary; Wright, Robert O.; Parsons, Patrick J.; Aldous, Kenneth M.; Praamsma, Meredith L.; Beidler, Caroline; Dietrich, Kim N.

    2015-01-01

    Background Manganese (Mn) plays a vital role in brain growth and development, yet excessive exposure can result in neurotoxicity. Marietta, Ohio, is home to the nation’s longest-operating ferromanganese refinery, and community concern about exposure led to the development of the research study. Objectives Our overall goal was to address the community’s primary research question: “Does Mn affect cognitive development of children?” We evaluated the relationships between Mn exposure as measured by blood and hair Mn, along with other neurotoxicants including blood lead (Pb) and serum cotinine, and child cognition. Methods Children 7–9 years of age were enrolled (n = 404) in the Communities Actively Researching Exposure Study (CARES) from Marietta and Cambridge, Ohio, and their surrounding communities from October 2008 through March 2013. Blood and hair were analyzed for Mn and Pb, and serum was analyzed for cotinine. We used penalized splines to assess potential nonlinear associations between biological measures and IQ subscale scores, followed by multivariable regression models with categorical variables based on quartiles of the distribution for biological measures with nonlinear associations and continuous variables for biological measures with linear associations. Results Geometric mean blood (n = 327) and hair Mn (n = 370) concentrations were 9.67 ± 1.27 ?g/L and 416.51 ± 2.44 ng/g, respectively. After adjusting for potential confounders, both low and high blood and hair Mn concentrations were associated with lower Full Scale IQ and subscale scores, with significant negative associations between the highest quartile and middle two quartiles of blood Mn (? –3.51; 95% CI: –6.64, –0.38) and hair Mn (? –3.66; 95% CI: –6.9, –0.43%) and Full Scale IQ. Conclusions Both low and high Mn concentrations in blood and hair were negatively associated with child IQ scores. Serum cotinine was negatively associated with child cognitive function. Citation Haynes EN, Sucharew H, Kuhnell P, Alden J, Barnas M, Wright RO, Parsons PJ, Aldous KM, Praamsma ML, Beidler C, Dietrich KN. 2015. Manganese exposure and neurocognitive outcomes in rural school-age children: the Communities Actively Researching Exposure Study (Ohio, USA). Environ Health Perspect 123:1066–1071;?http://dx.doi.org/10.1289/ehp.1408993 PMID:25902278

  5. Community-Based Research as a Mechanism to Reduce Environmental Health Disparities in American Indian and Alaska Native Communities

    PubMed Central

    McOliver, Cynthia Agumanu; Camper, Anne K.; Doyle, John T.; Eggers, Margaret J.; Ford, Tim E.; Lila, Mary Ann; Berner, James; Campbell, Larry; Donatuto, Jamie

    2015-01-01

    Racial and ethnic minority communities, including American Indian and Alaska Natives, have been disproportionately impacted by environmental pollution and contamination. This includes siting and location of point sources of pollution, legacies of contamination of drinking and recreational water, and mining, military and agricultural impacts. As a result, both quantity and quality of culturally important subsistence resources are diminished, contributing to poor nutrition and obesity, and overall reductions in quality of life and life expectancy. Climate change is adding to these impacts on Native American communities, variably causing drought, increased flooding and forced relocation affecting tribal water resources, traditional foods, forests and forest resources, and tribal health. This article will highlight several extramural research projects supported by the United States Environmental Protection Agency (USEPA) Science to Achieve Results (STAR) tribal environmental research grants as a mechanism to address the environmental health inequities and disparities faced by tribal communities. The tribal research portfolio has focused on addressing tribal environmental health risks through community based participatory research. Specifically, the STAR research program was developed under the premise that tribal populations may be at an increased risk for environmentally-induced diseases as a result of unique subsistence and traditional practices of the tribes and Alaska Native villages, community activities, occupations and customs, and/or environmental releases that significantly and disproportionately impact tribal lands. Through a series of case studies, this article will demonstrate how grantees—tribal community leaders and members and academic collaborators—have been addressing these complex environmental concerns by developing capacity, expertise and tools through community-engaged research. PMID:25872019

  6. Community-based research as a mechanism to reduce environmental health disparities in american Indian and alaska native communities.

    PubMed

    McOliver, Cynthia Agumanu; Camper, Anne K; Doyle, John T; Eggers, Margaret J; Ford, Tim E; Lila, Mary Ann; Berner, James; Campbell, Larry; Donatuto, Jamie

    2015-04-01

    Racial and ethnic minority communities, including American Indian and Alaska Natives, have been disproportionately impacted by environmental pollution and contamination. This includes siting and location of point sources of pollution, legacies of contamination of drinking and recreational water, and mining, military and agricultural impacts. As a result, both quantity and quality of culturally important subsistence resources are diminished, contributing to poor nutrition and obesity, and overall reductions in quality of life and life expectancy. Climate change is adding to these impacts on Native American communities, variably causing drought, increased flooding and forced relocation affecting tribal water resources, traditional foods, forests and forest resources, and tribal health. This article will highlight several extramural research projects supported by the United States Environmental Protection Agency (USEPA) Science to Achieve Results (STAR) tribal environmental research grants as a mechanism to address the environmental health inequities and disparities faced by tribal communities. The tribal research portfolio has focused on addressing tribal environmental health risks through community based participatory research. Specifically, the STAR research program was developed under the premise that tribal populations may be at an increased risk for environmentally-induced diseases as a result of unique subsistence and traditional practices of the tribes and Alaska Native villages, community activities, occupations and customs, and/or environmental releases that significantly and disproportionately impact tribal lands. Through a series of case studies, this article will demonstrate how grantees-tribal community leaders and members and academic collaborators-have been addressing these complex environmental concerns by developing capacity, expertise and tools through community-engaged research. PMID:25872019

  7. Characterization of water quality and biological communities, Fish Creek, Teton County, Wyoming, 2007-08

    USGS Publications Warehouse

    Eddy-Miller, Cheryl A.; Peterson, David A.; Wheeler, Jerrod D.; Leemon, Daniel J.

    2010-01-01

    Fish Creek, a tributary to the Snake River, is about 25 river kilometers long and is located in Teton County in western Wyoming near the town of Wilson. Public concern about nuisance growths of aquatic plants in Fish Creek have been increasing in recent years. To address this concern, the U.S. Geological Survey conducted a study in cooperation with the Teton Conservation District to characterize the water quality and biological communities in Fish Creek. Water-quality samples were collected for analyses of physical properties and water chemistry (nutrients, nitrate isotopes, and wastewater chemicals) between March 2007 and October 2008 from seven surface-water sites and three groundwater wells. During this same period, aquatic plant and macroinvertebrate samples were collected and habitat characteristics were measured at the surface-water sites. The main objectives of this study were to (1) evaluate nutrient concentrations (that influence biological indicators of eutrophication) and potential sources of nutrients by using stable isotope analysis and other indicator chemicals (such as caffeine and disinfectants) that could provide evidence of anthropogenic sources, such as wastewater or septic tank contamination in Fish Creek and adjacent groundwater, and (2) characterize the algal, macrophyte, and macroinvertebrate communities and habitat of Fish Creek. Nitrate was the dominant species of dissolved nitrogen present in all samples and was the only bioavailable species detected at concentrations greater than the laboratory reporting level in all surface-water samples. Average concentrations of dissolved nitrate in surface water were largest in samples collected from the two sites with seasonal flow near Teton Village and decreased downstream; the smallest concentration was at downstream site A-Wck. Concentrations of dissolved nitrate in groundwater were consistently greater than concentrations in corresponding surface-water sites during the same sampling event. Orthophosphate was the primary dissolved species of phosphorus present in all surface-water and groundwater samples. The average concentration of dissolved orthophosphate in surface water was largest in samples collected from near Teton Village; samples from all other sites had similar average concentrations. Concentrations of dissolved orthophosphate in groundwater also were typically greater than concentrations in corresponding surface-water sites during the same sampling event. The aquatic plant communities in Fish Creek typically were composed of a mixture of macrophytes, macroalgae, microalgae, and moss. The composition of the aquatic plant community in Fish Creek appeared to shift in the downstream direction in 2007. On average, the proportion of macrophytes ranged from about 1 percent at site A-R1U, the most upstream site, to 54 percent of the plant community at site A-R6D, the farthest downstream site sampled during 2007. The downstream increase in macrophytes was accompanied by a downstream decrease in microalgae. The average proportion of microalgae ranged from 80 percent at site A-R1U to 24 percent at site A-R6D. The proportion of the macroalgae Cladophora in the aquatic plant community was relatively high at sites A-Wck and A-R3D in both 2007 and 2008.

  8. World Malaria Day at UC Davis: Current research in vector biology and genetics at UC Davis

    E-print Network

    Ishida, Yuko

    World Malaria Day at UC Davis: Current research in vector biology and genetics at UC Davis When and genetics will come together to discuss their research efforts. For more information or to participate

  9. NASA Space Biology Research Associate Program for the 21st Century

    NASA Technical Reports Server (NTRS)

    Sonnenfeld, Gerald

    2000-01-01

    The Space Biology Research Associate Program for the 21st Century provided a unique opportunity to train individuals to conduct biological research in hypo- and hyper-gravity, and to conduct ground-based research. This grant was developed to maximize the potential for Space Biology as an emerging discipline and to train a cadre of space biologists. The field of gravitational and space biology is rapidly growing at the future of the field is reflected in the quality and education of its personnel. Our chief objective was to train and develop these scientists rapidly and in a cost effective model.

  10. Building partnerships in community-based participatory research: budgetary and other cost considerations.

    PubMed

    Hoeft, Theresa J; Burke, Wylie; Hopkins, Scarlett E; Charles, Walkie; Trinidad, Susan B; James, Rosalina D; Boyer, Bert B

    2014-03-01

    Community-based participatory research (CBPR) is an important framework for partnering with communities to reduce health disparities. Working in partnership with community incurs additional costs, some that can be represented in a budget summary page and others that are tied to the competing demands placed on community and academic partners. These cost considerations can inform development of community-academic partnerships. We calculated costs from a case study based on an ongoing CBPR project involving a Community Planning Group (CPG) of community co-researchers in rural Alaska and a bicultural liaison group who help bridge communication between CPG and academic co-researchers. Budget considerations specific to CBPR include travel and other communication-related costs, compensation for community partners, and food served at meetings. We also identified sources of competing demands for community and academic partners. Our findings can inform budget discussions in community-academic partnerships. Discussions of competing demands on community partners' time can help plan timelines for CBPR projects. Our findings may also inform discussions about tenure and promotion policies that may represent barriers to participation in CBPR for academic researchers. PMID:23632077

  11. Biological soil crusts across disturbance-recovery scenarios: effect of grazing regime on community dynamics

    USGS Publications Warehouse

    Concostrina-Zubiri, L.; Huber-Sannwald, E.; Martínez, I.; Flores Flores, J. L.; Reyes-Agüero, J. A.; Escudero, A.; Belnap, Jayne

    2014-01-01

    Grazing represents one of the most common disturbances in drylands worldwide, affecting both ecosystem structure and functioning. Despite the efforts to understand the nature and magnitude of grazing effects on ecosystem components and processes, contrasting results continue to arise. This is particularly remarkable for the biological soil crust (BSC) communities (i.e., cyanobacteria, lichens, and bryophytes), which play an important role in soil dynamics. Here we evaluated simultaneously the effect of grazing impact on BSC communities (resistance) and recovery after livestock exclusion (resilience) in a semiarid grassland of Central Mexico. In particular, we examined BSC species distribution, species richness, taxonomical group cover (i.e., cyanobacteria, lichen, bryophyte), and composition along a disturbance gradient with different grazing regimes (low, medium, high impact) and along a recovery gradient with differently aged livestock exclosures (short-, medium-, long-term exclusion). Differences in grazing impact and time of recovery from grazing both resulted in slight changes in species richness; however, there were pronounced shifts in species composition and group cover. We found we could distinguish four highly diverse and dynamic BSC species groups: (1) species with high resistance and resilience to grazing, (2) species with high resistance but low resilience, (3) species with low resistance but high resilience, and (4) species with low resistance and resilience. While disturbance resulted in a novel diversity configuration, which may profoundly affect ecosystem functioning, we observed that 10 years of disturbance removal did not lead to the ecosystem structure found after 27 years of recovery. These findings are an important contribution to our understanding of BCS dynamics from a species and community perspective placed in a land use change context.

  12. Family Violence and the Need for Prevention Research in First Nations, Inuit, and Métis Communities1

    PubMed Central

    Andersson, Neil; Nahwegahbow, Amy

    2010-01-01

    Existing sources produce widely varying estimates of family violence in First Nations, Inuit, and Métis communities; taken together, they imply a convincing if poorly quantified higher risk of family violence in Aboriginal communities, with the greater burden borne by women. With the accelerating HIV epidemic in some Aboriginal communities, prevention of domestic violence takes on even greater urgency. Five planks in a prevention research platform include: training emerging researchers from all Aboriginal groups to promote culturally specific research; systematic review of unpublished and published knowledge of interventions that reduce domestic violence; intervention theory development specific to each community; attention to the particular ethical issues; and methods development focused on interventions. PMID:20975851

  13. Using Community-based Participatory Research (CBPR) To Target Health Disparities in Families

    PubMed Central

    Berge, Jerica M.; Mendenhall, Tai J.; Doherty, William J.

    2010-01-01

    Community-based participatory research (CBPR) is an action research approach that emphasizes collaborative partnerships between community members, community organizations, health care providers, and researchers to generate knowledge and solve local problems. Although relatively new to the field of family social science, family and health researchers have been using CBPR for over a decade. This paper will introduce CBPR methods, illustrate the usefulness of CBPR methods in families and health research, describe two CBPR projects related to diabetes, and conclude with lessons learned and strengths and weaknesses of CBPR. PMID:20625444

  14. Report of the Research Secretariat on Social Services and Community Development.

    ERIC Educational Resources Information Center

    National Council of La Raza, Washington, DC.

    The Research Secretariat on Social Services and Community Development was one of the five Hispanic research task forces funded by the Ford Foundation to determine Hispanic research priorities. Its three major purposes were the following: (1) to develop an Hispanic research and policy agenda which recommends research activities and prioritizes…

  15. Interdisciplinary Biomathematics: Engaging Undergraduates in Research on the Fringe of Mathematical Biology

    ERIC Educational Resources Information Center

    Fowler, Kathleen; Luttman, Aaron; Mondal, Sumona

    2013-01-01

    The US National Science Foundation's (NSF's) Undergraduate Biology and Mathematics (UBM) program significantly increased undergraduate research in the biomathematical sciences. We discuss three UBM-funded student research projects at Clarkson University that lie at the intersection of not just mathematics and biology, but also other…

  16. 9 CFR 112.9 - Biological products imported for research and evaluation.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 9 Animals and Animal Products 1 2011-01-01 2011-01-01 false Biological products imported for research and evaluation. 112.9 Section 112.9 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION... PACKAGING AND LABELING § 112.9 Biological products imported for research and evaluation. A...

  17. 9 CFR 112.9 - Biological products imported for research and evaluation.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false Biological products imported for research and evaluation. 112.9 Section 112.9 Animals and Animal Products ANIMAL AND PLANT HEALTH INSPECTION... PACKAGING AND LABELING § 112.9 Biological products imported for research and evaluation. A...

  18. APPLICATION Undergraduate Summer Research Internships in the Biological and Biomedical Sciences

    E-print Network

    Oliver, Douglas L.

    APPLICATION Undergraduate Summer Research Internships in the Biological and Biomedical Sciences of Connecticut Health Center invites applications for a limited number of summer research internships from highly motivated undergraduate students who have an interest in obtaining a Ph.D. in the biological and biomedical

  19. Research Opportunities in Subtidal Marine Biology and Ecology in the Gagnon Lab

    E-print Network

    Oyet, Alwell

    Research Opportunities in Subtidal Marine Biology and Ecology in the Gagnon Lab Opportunities are available for motivated undergraduate and graduate students to conduct research in marine biology of shallow, marine benthic ecosystems in subarctic and cold temperate regions, while contributing novel

  20. Exporting, Importing, and Shipping Biological Research Materials Regulatory Review Checklist and Record

    E-print Network

    California at Berkeley, University of

    Exporting, Importing, and Shipping Biological Research Materials Regulatory Review Checklist to help researchers comply with shipping laws for biological shipments to and from the UC Berkeley campus. Shipping laws are very clear that it is the shipper's responsibility to package materials correctly

  1. ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus

    E-print Network

    Waldmann, Uwe

    ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus Journal (without HIV) Subject: Virology #12;#12;ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus v1; ref status: not peer reviewed Peter D. Karp Bonnie Berger Diane Kovats Thomas

  2. ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus

    E-print Network

    Waldmann, Uwe

    ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus Journal for this article. Categories Subject: Message from ISCB Counts Figures: 0 Tables: 0 Pages: 3 #12;#12;ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus Peter D. Karp Bonnie

  3. Research Programs Constituting U.S. Participation in the International Biological Program.

    ERIC Educational Resources Information Center

    National Academy of Sciences--National Research Council, Washington, DC. Div. of Biology and Agriculture.

    The United States contribution to the International Biological Program, which aims to understand more clearly the interrelationships within ecosystems, is centered on multidisciplinary research programs investigating the biological basis of ecological productivity and human welfare. Integrated research programs have been established for the…

  4. Engaging Students in Authentic Microbiology Research in an Introductory Biology Laboratory Course is Correlated with Gains in Student Understanding of the Nature of Authentic Research and Critical Thinking†

    PubMed Central

    Gasper, Brittany J.; Gardner, Stephanie M.

    2013-01-01

    Recent recommendations for biology education highlight the role of authentic research experiences early in undergraduate education as a means of increasing the number and quality of biology majors. These experiences will inform students on the nature of science, increase their confidence in doing science, as well as foster critical thinking skills, an area that has been lacking despite it being one of the desired outcomes at undergraduate institutions and with future employers. With these things in mind, we have developed an introductory biology laboratory course where students design and execute an authentic microbiology research project. Students in this course are assimilated into the community of researchers by engaging in scholarly activities such as participating in inquiry, reading scientific literature, and communicating findings in written and oral formats. After three iterations of a semester-long laboratory course, we found that students who took the course showed a significant increase in their understanding of the nature of authentic research and their level of critical thinking skills. PMID:23858351

  5. PRIORITIES FOR BIOLOGIC MARKERS RESEARCH IN ENVIRONMENTAL HEALTH

    EPA Science Inventory

    Recent advances in molecular and cellular biology allow for measurement of biologic events or substances that may provide markers of exposure, effect or susceptibility in humans. he application of these new and emerging techniques to environmental health offers the possibility of...

  6. Edinburgh Research Explorer A framework for evolutionary systems biology

    E-print Network

    Millar, Andrew J.

    systems biology models employing the rigorous algorithms that are at the core of much work and robustness. Combining corresponding parameter estimates with population genetics models raises in computational systems biology. The framework exploits synergies between the realism of such models and the need

  7. Research on Bacteria in the Mainstream of Biology.

    ERIC Educational Resources Information Center

    Magasanik, Boris

    1988-01-01

    Stresses the importance of investigating bacterial mechanisms to discover clues for a greater understanding of cells. Cites examples of study areas of biological significance which may reveal information about the evolution of prokaryotes and eukaryotes and lead to a comprehensive theory of cell biology. (RT)

  8. Culture and Community in Research with American Indian and Alaska Native Infants, Toddlers, and Families

    ERIC Educational Resources Information Center

    Spicer, Paul; Sarche, Michelle

    2007-01-01

    In this brief essay the authors reflect on the value of community participation and cultural adaptation in their evolving research on American Indian and Alaska Native (AI/AN) infant and toddler development. They describe three concerns identified by their AI/AN community partners in adapting established research methodologies to work in AI/AN…

  9. 78 FR 53466 - Announcement of Funding Awards for Transformation Initiative: Sustainable Communities Research...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-08-29

    ... URBAN DEVELOPMENT Announcement of Funding Awards for Transformation Initiative: Sustainable Communities... Development and Research (PD&R), under the Assistant Secretary, administered the FY13 Sustainable Communities... Development and Research, HUD. ACTION: Announcement of funding awards. SUMMARY: In accordance with Section...

  10. Addressing Perinatal Disparities Using Community-Based Participatory Research: Data into Action

    ERIC Educational Resources Information Center

    Masho, Saba; Keyser-Marcus, Lori; Varner, Sara; Singleton, Rose; Bradford, Judith; Chapman, Derek; Svikis, Dace

    2011-01-01

    Striking racial disparities in infant mortality exist in the United States, with rates of infant death among African Americans nearly twice the national average. Community-based participatory research approaches have been successful in fostering collaborative relationships between communities and researchers that are focused on developing…

  11. Virtual Communities of Practice: Bridging Research and Practice Using Web 2.0

    ERIC Educational Resources Information Center

    Lewis, Laura A.; Koston, Zoe; Quartley, Marjorie; Adsit, Jason

    2011-01-01

    A significant dilemma for the health and human service professions continues to be the question of how best to bridge the divide between academic research and practice. Communities of practice have traditionally been a vehicle for collaborative research and for information exchange (Moore, 2008). Through collaboration, communities of practice have…

  12. Institutionalizing Community-Based Learning and Research: The Case for External Networks

    ERIC Educational Resources Information Center

    Shrader, Elizabeth; Saunders, Mary Anne; Marullo, Sam; Benatti, Sylvia; Weigert, Kathleen Maas

    2008-01-01

    Conversations continue as to whether and how community-based learning and research (CBLR) can be most effectively integrated into the mission and practice of institutions of higher education (IHEs). In 2005, eight District of Columbia- (DC-) area universities affiliated with the Community Research and Learning (CoRAL) Network engaged in a planning…

  13. An Engineering Approach to Management of Occupational and Community Noise Exposure at NASA Lewis Research Center

    NASA Technical Reports Server (NTRS)

    Cooper, Beth A.

    1997-01-01

    Workplace and environmental noise issues at NASA Lewis Research Center are effectively managed via a three-part program that addresses hearing conservation, community noise control, and noise control engineering. The Lewis Research Center Noise Exposure Management Program seeks to limit employee noise exposure and maintain community acceptance for critical research while actively pursuing engineered controls for noise generated by more than 100 separate research facilities and the associated services required for their operation.

  14. Management of Biological Materials in Wastewater from Research & Development Facilities

    SciTech Connect

    Raney, Elizabeth A.; Moon, Thomas W.; Ballinger, Marcel Y.

    2011-04-01

    PNNL has developed and instituted a systematic approach to managing work with biological material that begins in the project planning phase and carries through implementation to waste disposal. This paper describes two major processes used at PNNL to analyze and mitigate the hazards associated with working with biological materials and evaluate them for disposal to the sewer, ground, or surface water in a manner that protects human health and the environment. The first of these processes is the Biological Work Permit which is used to identify requirements for handling, storing, and working with biological materials and the second is the Sewer Approval process which is used to evaluate discharges of wastewaters containing biological materials to assure they meet industrial wastewater permits and other environmental regulations and requirements.

  15. Integrating Research and Education at Research-Extensive Universities with Research-Intensive Communities

    ERIC Educational Resources Information Center

    Desai, Ketaki V.; Gatson, Sarah N.; Stiles, Thomas W.; Stewart, Randolph H.; Laine, Glen A.; Quick, Christopher M.

    2008-01-01

    Although the Boyer Commission (1998) lamented the lack of research opportunities for all undergraduates at research-extensive universities, it did not provide a feasible solution consistent with the mandate for faculty to maintain sustainable physiology research programs. The costs associated with one-on-one mentoring, and the lack of a sufficient…

  16. Development of a Knowledgebase to Integrate, Analyze, Distribute, and Visualize Microbial Community Systems Biology Data

    SciTech Connect

    Banfield, Jillian; Thomas, Brian

    2015-01-15

    We have developed a flexible knowledgebase system, ggKbase, (http://gg.berkeley.edu), to enable effective data analysis and knowledge generation from samples from which metagenomic and other ‘omics’ data are obtained. Within ggKbase, data can be interpreted, integrated and linked to other databases and services. Sequence information from complex metagenomic samples can be quickly and effectively resolved into genomes and biologically meaningful investigations of an organism’s metabolic potential can then be conducted. Critical features make analyses efficient, allowing analysis of hundreds of genomes at a time. The system is being used to support research in multiple DOE-relevant systems, including the LBNL SFA subsurface science biogeochemical cycling research at Rifle, Colorado. ggKbase is supporting the research of a rapidly growing group of users. It has enabled studies of carbon cycling in acid mine drainage ecosystems, biologically-mediated transformations in deep subsurface biomes sampled from mines and the north slope of Alaska, to study the human microbiome and for laboratory bioreactor-based remediation investigations.

  17. Research to Reality: Moving Evidence Into Practice Through an Online Community of Practice

    PubMed Central

    La Porta, Madeline; Gallagher, Alissa; Vinson, Cynthia; Bernal, Sarah Bruce

    2014-01-01

    How can a community of practice help further the practical application of cancer control research? In 2011, the National Cancer Institute (NCI) launched an online community of practice, Research to Reality (R2R). R2R aims to infuse evidence-based strategies into communities by engaging researchers and practitioners in a joint approach to research dissemination. To measure community growth and engagement, NCI measures data across 3 program domains: content, interaction, and activity. NCI uses Web analytics, usability testing, and content analyses to manage and evaluate R2R. As of December 2013, R2R had more than 1,700 registered members. More than 500 researchers and practitioners register for the monthly cyber-seminars, and 40% return each month. R2R hosts more than 15,500 page views and 5,000 site visits in an average month. This article describes the process of convening this online community and quantifies our experiences to date. PMID:24809364

  18. Development of a Model, Metal-reducing Microbial Community for a System Biology Level Assessment of Desulfovibrio vulgaris as part of a Community

    SciTech Connect

    Elias, Dwayne; Schadt, Christopher; Miller, Lance; Phelps, Tommy; Brown, S. D.; Arkin, Adam; Hazen, Terry; Drake, Megin; Yang, Z.K.; Podar, Mircea

    2010-05-17

    One of the largest experimental gaps is between the simplicity of pure cultures and the complexity of open environmental systems, particularly in metal-contaminated areas. These microbial communities form ecosystem foundations, drive biogeochemical processes, and are relevant for biotechnology and bioremediation. A model, metal-reducing microbial community was constructed as either syntrophic or competitive to study microbial cell to cell interactions, cell signaling and competition for resources. The microbial community was comprised of the metal-reducing Desulfovibrio vulgaris Hildenborough and Geobacter sulfurreducens PCA. Additionally, Methanococcus maripaludis S2 was added to study complete carbon reduction and maintain a low hydrogen partial pressure for syntrophism to occur. Further, considerable work has been published on D. vulgaris and the D. vulgaris/ Mc. maripaludis co-culture both with and without stress. We are extending this work by conducting the same stress conditions on the model community. Additionally, this comprehensive investigation includes physiological and metabolic analyses as well as specially designed mRNA microarrays with the genes for all three organisms on one slide so as to follow gene expression changes in the various cultivation conditions as well as being comparable to the co- and individual cultures. Further, state-of -the-art comprehensive AMT tag proteomics allows for these comparisons at the protein level for a systems biology assessment of a model, metal-reducing microbial community. Preliminary data revealed that lactate oxidation by D. vulgaris was sufficient to support both G. sulfurreducens and M. maripaludis via the excretion of H2 and acetate. Fumarate was utilized by G. sulfurreducens and reduced to succinate since neither of the other two organisms can reduce fumarate. Methane was quantified, suggesting acetate and H2 concentrations were sufficient for M. maripaludis. Steady state community cultivation will allow for a comprehensive, system biology level analysis of a metal-reducing microbial community.

  19. Involving Communities in Deciding What Benefits They Receive in Multinational Research.

    PubMed

    Wendler, David; Shah, Seema

    2015-10-01

    There is wide agreement that communities in lower-income countries should benefit when they participate in multinational research. Debate now focuses on how and to what extent these communities should benefit. This debate has identified compelling reasons to reject the claim that whatever benefits a community agrees to accept are necessarily fair. Yet, those who conduct clinical research may conclude from this rejection that there is no reason to involve communities in the process of deciding how they benefit. Against this possibility, the present manuscript argues that involving host communities in this process helps to promote four important goals: (1) protecting host communities, (2) respecting host communities, (3) promoting transparency, and (4) enhancing social value. PMID:26224724

  20. Expanding biological data standards development processes for US IOOS: visual line transect observing community for mammal, bird, and turtle data

    USGS Publications Warehouse

    Fornwall, M.; Gisiner, R.; Simmons, S. E.; Moustahfid, Hassan; Canonico, G.; Halpin, P.; Goldstein, P.; Fitch, R.; Weise, M.; Cyr, N.; Palka, D.; Price, J.; Collins, D.

    2012-01-01

    The US Integrated Ocean Observing System (IOOS) has recently adopted standards for biological core variables in collaboration with the US Geological Survey/Ocean Biogeographic Information System (USGS/OBIS-USA) and other federal and non-federal partners. In this Community White Paper (CWP) we provide a process to bring into IOOS a rich new source of biological observing data, visual line transect surveys, and to establish quality data standards for visual line transect observations, an important source of at-sea bird, turtle and marine mammal observation data. The processes developed through this exercise will be useful for other similar biogeographic observing efforts, such as passive acoustic point and line transect observations, tagged animal data, and mark-recapture (photo-identification) methods. Furthermore, we suggest that the processes developed through this exercise will serve as a catalyst for broadening involvement by the larger marine biological data community within the goals and processes of IOOS.

  1. Through Microgravity and Towards the Stars: Microgravity and Strategic Research at Marshall's Biological and Physical Space Research Laboratory

    NASA Technical Reports Server (NTRS)

    Curreri, Peter A.

    2003-01-01

    The Microgravity and Strategic research at Marshall s Biological and Physical Space Research Laboratory will be reviewed. The environment in orbit provides a unique opportunity to study Materials Science and Biotechnology in the absence of sedimentation and convection. There are a number of peer-selected investigations that have been selected to fly on the Space Station that have been conceived and are led by Marshall s Biological and Physical Research Laboratory s scientists. In addition to Microgravity research the Station will enable research in "Strategic" Research Areas that focus on enabling humans to live, work, and explore the solar system safely. New research in Radiation Protection, Strategic Molecular Biology, and In-Space Fabrication will be introduced.

  2. For Community College Administrators, Staff and Faculty Research.

    ERIC Educational Resources Information Center

    Todaro, Julie Beth

    2000-01-01

    Lists a number of popular and useful master sites that librarians use when searching for community college resources and performing "comparisons shopping" on search engines. Subject directories tend to provide lists of community colleges by state and the four to six national organizations. (VWC)

  3. Impact Models: Comprehensive Community Initiatives. Research Brief Series

    ERIC Educational Resources Information Center

    Center for Promise, 2013

    2013-01-01

    The East Durham Children's Initiative (EDCI), a partnership among local government, nonprofit, faith, and school organizations, is focusing on the community's most promising resource--its children--in order to restore the city to the thriving African-American middle-class community it was throughout much of the mid-20th century. Since 2008, EDCI…

  4. Improving Numeracy Outcomes for Children through Community Action Research

    ERIC Educational Resources Information Center

    Bleach, Josephine

    2015-01-01

    Virtue, according to Aristotle, is doing the right things at the right time with the right people for the right end and in the right way. This concept is central to the work of the Early Learning Initiative, an Irish community-based educational initiative. This paper describes how a community of parents, early childhood care and education…

  5. Mental health service needs of a Latino population: a community-based participatory research project.

    PubMed

    Shattell, Mona M; Hamilton, Desmina; Starr, Sharon S; Jenkins, Courtney J; Hinderliter, Norma Angelica

    2008-04-01

    Community-based participatory research bridges the gap between academic researchers and the real-life issues of communities and offers promise for addressing racial and ethnic disparities in mental health care. The purpose of this community-based participatory research was to identify factors that affect access, use, and perception of mental health services by a Latino population at individual, organizational, and community levels. Individual level factors included health beliefs about mental illness and care, suspicions of providers, financial concerns, and culturally determined gender roles. Organizational factors included problems with access to care related to cost, lack of bilingual providers, and culturally competent care; and community level factors included distance between resources and the need for services to be provided in community sites. Immigration status and acculturation were identified as factors at all levels. PMID:18382914

  6. Translating cancer prevention and control research into the community setting: workforce implications.

    PubMed

    Harrop, J Phil; Nelson, David E; Kuratani, Darrah Goo; Mullen, Patricia Dolan; Paskett, Electra D

    2012-05-01

    A gap exists between cancer prevention research and its translation into community practice. Two strategies to reduce this gap are community-based participatory research (CBPR) and dissemination research. CBPR offers an avenue to engage academic and community partners, thereby providing mechanisms for joint learning and application of knowledge. Dissemination research examines the movement of evidence-based public health and clinical innovations to practice settings. While applying these approaches may reduce the gap between research and practice, the cancer prevention workforce may be inadequate in size, insufficiently trained, lack resources and incentives, or face structural barriers to effectively participate in CBPR and disseminate evidence-based research findings into practice. Information on translating cancer prevention information to communities and workforce implications was obtained from a panel of experts and through a review of the literature on CBPR and dissemination research. The expert panel and literature review identified major barriers to successfully conducting CBPR and dissemination research in community settings. Barriers included inadequate policies; insufficient networking and communication infrastructures; unsupportive research cultures, climates, and mindsets; inadequate researcher and practitioner education; and limited CBPR and dissemination research with adequate study designs. No specific estimates of the cancer prevention workforce were found; however, indirect evidence for a shortfall were identified. We recommend expanding CBPR training for academic and community partners; increasing funding for dissemination research and practice; supporting proven partnerships; and providing strategic coordination for government agencies, research institutions, nongovernmental organizations, and the private sector to foster better dissemination of information and integration of community-based cancer prevention and control programs and practices. Specific challenges and needs that must be addressed to improve the translation of cancer prevention research into community settings were identified. PMID:22362356

  7. 'Biologizing' Psychopathy: Ethical, Legal, and Research Implications at the Interface of Epigenetics and Chronic Antisocial Conduct.

    PubMed

    Tamatea, Armon J

    2015-10-01

    Epigenetics, a field that links genetics and environmental influences on the expression of phenotypic traits, offers to increase our understanding of the development and trajectory of disease and psychological disorders beyond that thought of traditional genetic research and behavioural measures. By extension, this new perspective has implications for risk and risk management of antisocial behaviour where there is a biological component, such as psychopathy. Psychopathy is a personality disorder associated with repeat displays of antisocial behaviour, and is associated with the disproportionate imposition of harm on communities. Despite advances in our knowledge of psychopathic individuals, the construct remains complex and is hampered by a lack of integration across a range of fundamental domains. The clinical and forensic research on psychopathy is brought into conversation with the emerging field of epigenetics to highlight critical issues of (1) clinical definition and diagnosis, (2) assessment, (3) aetiology of psychopathic phenotypes, and (4) treatment and rehabilitation approaches. Broader ethical and legal questions of the role of epigenetic mechanisms in the management of psychopathy beyond the criminal justice arena are also outlined. Copyright © 2015 John Wiley & Sons, Ltd. PMID:26364988

  8. Using Concept Mapping in Community-Based Participatory Research: A Mixed Methods Approach

    PubMed Central

    Windsor, Liliane Cambraia

    2015-01-01

    Community-based participatory research (CBPR) has been identified as a useful approach to increasing community involvement in research. Developing rigorous methods in conducting CBPR is an important step in gaining more support for this approach. The current article argues that concept mapping, a structured mixed methods approach, is useful in the initial development of a rigorous CBPR program of research aiming to develop culturally tailored and community-based health interventions for vulnerable populations. A research project examining social dynamics and consequences of alcohol and substance use in Newark, New Jersey, is described to illustrate the use of concept mapping methodology in CBPR. A total of 75 individuals participated in the study.

  9. The Community-First Land-Centred Theoretical Framework: Bringing a "Good Mind" to Indigenous Education Research?

    ERIC Educational Resources Information Center

    Styres, Sandra D.; Zinga, Dawn M.

    2013-01-01

    This article introduces an emergent research theoretical framework, the community-first Land-centred research framework. Carefully examining the literature within Indigenous educational research, we noted the limited approaches for engaging in culturally aligned and relevant research within Indigenous communities. The community-first Land-centred…

  10. Self Organizing Systems and the Research Implications for Biological Systems

    NASA Astrophysics Data System (ADS)

    Denkins-Taffe, Lauren R.; Alfred, Marcus; Lindesay, James

    2008-03-01

    The knowledge gained from the human genome project, has provided an added opportunity to study the dynamical relationships within biological systems and can lead to an increased knowledge of diseases and subsequent drug discovery. Through computation, methods in which to rebuild these systems are being studied. These methods, which have first been applied to simpler systems: predator-prey, and self sustaining ecosystems can be applied to the study of microscopic biological systems.

  11. National Aeronautics and Space Administration Biological and Physical Research Enterprise Strategy

    NASA Technical Reports Server (NTRS)

    2003-01-01

    As the 21st century begins, NASA's new Vision and Mission focuses the Agency's Enterprises toward exploration and discovery.The Biological and Physical Research Enterprise has a unique and enabling role in support of the Agency's Vision and Mission. Our strategic research seeks innovations and solutions to enable the extension of life into deep space safely and productively. Our fundamental research, as well as our research partnerships with industry and other agencies, allow new knowledge and tech- nologies to bring improvements to life on Earth. Our interdisciplinary research in the unique laboratory of microgravity addresses opportunities and challenges on our home planet as well as in space environments. The Enterprise maintains a key role in encouraging and engaging the next generation of explorers from primary school through the grad- uate level via our direct student participation in space research.The Biological and Physical Research Enterprise encompasses three themes. The biological sciences research theme investigates ways to support a safe human presence in space. This theme addresses the definition and control of physiological and psychological risks from the space environment, including radiation,reduced gravity, and isolation. The biological sciences research theme is also responsible for the develop- ment of human support systems technology as well as fundamental biological research spanning topics from genomics to ecologies. The physical sciences research theme supports research that takes advantage of the space environment to expand our understanding of the fundamental laws of nature. This theme also supports applied physical sciences research to improve safety and performance of humans in space. The research partnerships and flight support theme establishes policies and allocates space resources to encourage and develop entrepreneurial partners access to space research.Working together across research disciplines, the Biological and Physical Research Enterprise is performing vital research and technology development to extend the reach of human space flight.

  12. Nourishing a partnership to improve middle school lunch options: a community-based participatory research project.

    PubMed

    Reich, Stephanie M; Kay, Joseph S; Lin, Grace C

    2015-01-01

    Community-based participatory research is predicated on building partnerships that tackle important issues to the community and effectively improve these issues. Community-based participatory research can also be an empowering experience, especially for children. This article describes a university-community partnership in which students at a low-income middle school worked to improve the quality of the cafeteria food provided to the 986 students eligible for free and reduced price lunches. The project led to menu changes, improved communication between youth, school administrators, and district staff, and enabled youth to enact school improvements that were beneficial for their health. PMID:25423246

  13. Community-Based Suicide Prevention Research in Remote On-Reserve First Nations Communities

    ERIC Educational Resources Information Center

    Isaak, Corinne A.; Campeau, Mike; Katz, Laurence Y.; Enns, Murray W.; Elias, Brenda; Sareen, Jitender

    2010-01-01

    Suicide is a complex problem linked to genetic, environmental, psychological and community factors. For the Aboriginal population more specifically, loss of culture, history of traumatic events, individual, family and community factors may also play a role in suicidal behaviour. Of particular concern is the high rate of suicide among Canadian…

  14. Case studies of community college non-science majors: Effects of self-regulatory interventions on biology self-efficacy and biological literacy

    NASA Astrophysics Data System (ADS)

    Maurer, Matthew J.

    Science literacy has been at the heart of current reform efforts in science education. The focus on developing essential skills needed for individual ability to be literate in science has been at the forefront of most K--12 science curricula. Reform efforts have begun to stretch into the postsecondary arena as well, with an ever increasing dialogue regarding the need for attention to science literacy by college students, especially non-science majors. This study set out to investigate how the use of self-regulatory interventions (specifically, goal setting, concept mapping, and reflective writing) affected student biology self-efficacy and biological literacy. This study employed a qualitative research design, analyzing three case studies. Participants in the study received ten self-regulatory interventions as a set of portfolio assignments. Portfolio work was qualitatively analyzed and coded for self-efficacy, as well as evidence of biological literacy. A biology self-efficacy survey was administered pre- and post- to provide a means of self-efficacy data triangulation. Literacy data was supported via a biological literacy rubric, constructed specifically for this study. Results indicated that mastery experiences were the source of biology self-efficacy. Self-efficacy for specific tasks increased over time, and changes in self-efficacy were corroborated by the self-efficacy survey. Students were found to express biological literacy at nominal, functional, or conceptual levels depending on the specific task. This was supported by data from the biological literacy rubric scores. Final conclusions and implications for the study indicated the need for further research with more samples of students in similar and different contexts. Given the fact that the literature in this area is sparse, the results obtained here have only begun to delve into this area of research. Generalization to other biology courses or contexts outside of the one presented in this study was cautioned until future studies can be conducted.

  15. A Case Study of a Community-Based Participatory Evaluation Research (CBPER) Project: Reflections on Promising Practices and Shortcomings

    ERIC Educational Resources Information Center

    Puma, Jini; Bennett, Laurie; Cutforth, Nick; Tombari, Chris; Stein, Paul

    2009-01-01

    This instrumental case study documents a community-based participatory evaluation research (CBPER) project that involved a community partner, two graduate students, a faculty member, and an external funder. It highlights the fact that a participatory evaluation model is a viable way to conduct community-based research (CBR) when a community

  16. Taxonomic and biological trait differences of stream macroinvertebrate communities between mediterranean

    E-print Network

    Bonada, Núria

    Correspondence: Nu´ria Bonada, University of Granada, Department of Animal Biology, Severo Ochoa s/n, 18071, Department of Animal Biology, Severo Ochoa s/n, 18071 Granada, Spain. Global Change Biology (2007) 13, 1658

  17. Systems Biology - A Pivotal Research Methodology for Understanding the Mechanisms of Traditional Medicine

    PubMed Central

    Lee, Soojin

    2015-01-01

    Objectives: Systems biology is a novel subject in the field of life science that aims at a systems’ level understanding of biological systems. Because of the significant progress in high-throughput technologies and molecular biology, systems biology occupies an important place in research during the post-genome era. Methods: The characteristics of systems biology and its applicability to traditional medicine research have been discussed from three points of view: data and databases, network analysis and inference, and modeling and systems prediction. Results: The existing databases are mostly associated with medicinal herbs and their activities, but new databases reflecting clinical situations and platforms to extract, visualize and analyze data easily need to be constructed. Network pharmacology is a key element of systems biology, so addressing the multi-component, multi-target aspect of pharmacology is important. Studies of network pharmacology highlight the drug target network and network target. Mathematical modeling and simulation are just in their infancy, but mathematical modeling of dynamic biological processes is a central aspect of systems biology. Computational simulations allow structured systems and their functional properties to be understood and the effects of herbal medicines in clinical situations to be predicted. Conclusion: Systems biology based on a holistic approach is a pivotal research methodology for understanding the mechanisms of traditional medicine. If systems biology is to be incorporated into traditional medicine, computational technologies and holistic insights need to be integrated. PMID:26388998

  18. Journal of the Torrey Botanical Society 130(04), 2003, pp. 244-252 Biological soil crust and vascular plant communities in a

    E-print Network

    Neher, Deborah A.

    :244-252. 2003.-A survey of biological crust components (bryophytes, lichens, chloro- phyta, bacteria), soil and Stichococcus bacillaris being the most common species. For bryophytes, the most common species were Polytrichum biological crust communities. Key words: Acari, biological soil crusts, bryophytes, todes, Oak Openings, sand

  19. A Community-Academic Partnered Grant Writing Series to Build Infrastructure for Partnered Research.

    PubMed

    King, Keyonna M; Pardo, Yvette-Janine; Norris, Keith C; Diaz-Romero, Maria; Morris, D'Ann; Vassar, Stefanie D; Brown, Arleen F

    2015-10-01

    Grant writing is an essential skill necessary to secure financial support for community programs and research projects. Increasingly, funding opportunities for translational biomedical research require studies to engage community partners, patients, or other stakeholders in the research process to address their concerns. However, there is little evidence on strategies to prepare teams of academic and community partners to collaborate on grants. This paper presents the description and formative evaluation of a two-part community-academic partnered grant writing series designed to help community organizations and academic institutions build infrastructure for collaborative research projects using a partnered approach. The first phase of the series was a half-day workshop on grant readiness, which was open to all interested community partners. The second phase, open only to community-academic teams that met eligibility criteria, was a 12-week session that covered partnered grant writing for foundation grants and National Institutes of Health grants. Participants in both phases reported an increase in knowledge and self-efficacy for writing partnered proposals. At 1-year follow-up, participants in Phase 2 had secured approximately $1.87 million in funding. This community-academic partnered grant writing series helped participants obtain proposal development skills and helped community-academic teams successfully compete for funding. PMID:26365589

  20. Social responsibility and research ethics in community-driven studies of industrialized hog production.

    PubMed Central

    Wing, Steve

    2002-01-01

    Environmental health research can document exposures and health effects that result from inequitable relationships between communities of low income or people of color and the institutions that derive benefits (profits, federal and state funding or services, avoidance of wastes) from activities and policies that burden these communities. Researchers, most of whom work in relatively privileged institutions, are placed in situations of conflicting loyalties if they conduct research in collaboration with, or on behalf of, communities burdened by environmental injustices. These conflicts can threaten the self-interest of researchers and may raise social and ethical issues that do not typically arise in research projects that respond to the agendas of institutions. This article describes how we addressed issues of research ethics and social responsibility in environmental health research on industrialized hog production in North Carolina. Researchers and institutional review boards are not well prepared to address ethical issues when interests of entire communities, as well as individual research participants, are involved. Community-driven research partnerships can help address problems in research ethics and can enhance the social responsibility of researchers and their institutions. PMID:12003746

  1. Soil nematode communities are ecologically more mature beneath late- than early-successional stage biological soil crusts

    USGS Publications Warehouse

    Darby, B.J.; Neher, D.A.; Belnap, J.

    2007-01-01

    Biological soil crusts are key mediators of carbon and nitrogen inputs for arid land soils and often represent a dominant portion of the soil surface cover in arid lands. Free-living soil nematode communities reflect their environment and have been used as biological indicators of soil condition. In this study, we test the hypothesis that nematode communities are successionally more mature beneath well-developed, late-successional stage crusts than immature, early-successional stage crusts. We identified and enumerated nematodes by genus from beneath early- and late-stage crusts from both the Colorado Plateau, Utah (cool, winter rain desert) and Chihuahuan Desert, New Mexico (hot, summer rain desert) at 0-10 and 10-30 cm depths. As hypothesized, nematode abundance, richness, diversity, and successional maturity were greater beneath well-developed crusts than immature crusts. The mechanism of this aboveground-belowground link between biological soil crusts and nematode community composition is likely the increased food, habitat, nutrient inputs, moisture retention, and/or environmental stability provided by late-successional crusts. Canonical correspondence analysis of nematode genera demonstrated that nematode community composition differed greatly between geographic locations that contrast in temperature, precipitation, and soil texture. We found unique assemblages of genera among combinations of location and crust type that reveal a gap in scientific knowledge regarding empirically derived characterization of dominant nematode genera in deserts soils and their functional role in a crust-associated food web. ?? 2006 Elsevier B.V. All rights reserved.

  2. Community Engagement Studios: A Structured Approach to Obtaining Meaningful Input From Stakeholders to Inform Research

    PubMed Central

    Joosten, Yvonne A.; Israel, Tiffany L.; Williams, Neely A.; Boone, Leslie R.; Schlundt, David G.; Mouton, Charles P.; Dittus, Robert S.; Bernard, Gordon R.

    2015-01-01

    Problem Engaging communities in research increases its relevance and may speed the translation of discoveries into improved health outcomes. Many researchers lack training to effectively engage stakeholders, whereas academic institutions lack infrastructure to support community engagement. Approach In 2009, the Meharry-Vanderbilt Community-Engaged Research Core began testing new approaches for community engagement, which led to the development of the Community Engagement Studio (CE Studio). This structured program facilitates project-specific input from community and patient stakeholders to enhance research design, implementation, and dissemination. Developers used a team approach to recruit and train stakeholders, prepare researchers to engage with stakeholders, and facilitate an in-person meeting with both. Outcomes The research core has implemented 28 CE Studios that engaged 152 community stakeholders. Participating researchers, representing a broad range of faculty ranks and disciplines, reported that input from stakeholders was valuable and that the CE Studio helped determine project feasibility and enhanced research design and implementation. Stakeholders found the CE Studio to be an acceptable method of engagement and reported a better understanding of research in general. A tool kit was developed to replicate this model and to disseminate this approach. Next Steps The research core will collect data to better understand the impact of CE Studios on research proposal submissions, funding, research outcomes, patient and stakeholder engagement in projects, and dissemination of results. They will also collect data to determine whether CE Studios increase patient-centered approaches in research and whether stakeholders who participate have more trust and willingness to participate in research. PMID:26107879

  3. The Community Earth System Model: A Framework for Collaborative Research

    SciTech Connect

    Hurrell, Jim; Holland, Marika M.; Gent, Peter R.; Ghan, Steven J.; Kay, Jennifer; Kushner, P.; Lamarque, J.-F.; Large, William G.; Lawrence, David M.; Lindsay, Keith; Lipscomb, William; Long , Matthew; Mahowald, N.; Marsh, D.; Neale, Richard; Rasch, Philip J.; Vavrus, Steven J.; Vertenstein, Mariana; Bader, David C.; Collins, William D.; Hack, James; Kiehl, J. T.; Marshall, Shawn

    2013-09-30

    The Community Earth System Model (CESM) is a flexible and extensible community tool used to investigate a diverse set of earth system interactions across multiple time and space scales. This global coupled model is a natural evolution from its predecessor, the Community Climate System Model, following the incorporation of new earth system capabilities. These include the ability to simulate biogeochemical cycles, atmospheric chemistry, ice sheets, and a high-top atmosphere. These and other new model capabilities are enabling investigations into a wide range of pressing scientific questions, providing new predictive capabilities and increasing our collective knowledge about the behavior and interactions of the earth system. Simulations with numerous configurations of the CESM have been provided to the Coupled Model Intercomparison Project Phase 5 (CMIP5) and are being analyzed by the broader community of scientists. Additionally, the model source code and associated documentation are freely available to the scientific community to use for earth system studies, making it a true community tool. Here we describe this earth modeling system, its various possible configurations, and illustrate its capabilities with a few science highlights.

  4. Collaborating with consumer and community representatives in health and medical research in Australia: results from an evaluation

    PubMed Central

    2011-01-01

    Objective To collaborate with consumer and community representatives in the Alcohol and Pregnancy Project from 2006-2008 http://www.ichr.uwa.edu.au/alcoholandpregnancy and evaluate researchers' and consumer and community representatives' perceptions of the process, context and impact of consumer and community participation in the project. Methods We formed two reference groups and sought consumer and community representatives' perspectives on all aspects of the project over a three year period. We developed an evaluation framework and asked consumer and community representatives and researchers to complete a self-administered questionnaire at the end of the project. Results Fifteen researchers (93.8%) and seven (53.8%) consumer and community representatives completed a questionnaire. Most consumer and community representatives agreed that the process and context measures of their participation had been achieved. Both researchers and consumer and community representatives identified areas for improvement and offered suggestions how these could be improved for future research. Researchers thought consumer and community participation contributed to project outputs and outcomes by enhancing scientific and ethical standards, providing legitimacy and authority, and increasing the project's credibility and participation. They saw it was fundamental to the research process and acknowledged consumer and community representatives for their excellent contribution. Consumer and community representatives were able to directly influence decisions about the research. They thought that consumer and community participation had significant influence on the success of project outputs and outcomes. Conclusions Consumer and community participation is an essential component of good research practice and contributed to the Alcohol and Pregnancy Project by enhancing research processes, outputs and outcomes, and this participation was valued by community and consumer representatives and researchers. The National Health and Medical Research Council in Australia expects researchers to work in partnership and involve consumer and community representatives in health and medical research, and to evaluate community and consumer participation. It is important to demonstrate whether consumer and community participation makes a difference to health and medical research. PMID:21569591

  5. Community-Based Participatory Research: Lessons Learned from the Centers for Children’s Environmental Health and Disease Prevention Research

    PubMed Central

    Israel, Barbara A.; Parker, Edith A.; Rowe, Zachary; Salvatore, Alicia; Minkler, Meredith; López, Jesús; Butz, Arlene; Mosley, Adrian; Coates, Lucretia; Lambert, George; Potito, Paul A.; Brenner, Barbara; Rivera, Maribel; Romero, Harry; Thompson, Beti; Coronado, Gloria; Halstead, Sandy

    2005-01-01

    Over the past several decades there has been growing evidence of the increase in incidence rates, morbidity, and mortality for a number of health problems experienced by children. The causation and aggravation of these problems are complex and multifactorial. The burden of these health problems and environmental exposures is borne disproportionately by children from low-income communities and communities of color. Researchers and funding institutions have called for increased attention to the complex issues that affect the health of children living in marginalized communities—and communities more broadly—and have suggested greater community involvement in processes that shape research and intervention approaches, for example, through community-based participatory research (CBPR) partnerships among academic, health services, public health, and community-based organizations. Centers for Children’s Environmental Health and Disease Prevention Research (Children’s Centers) funded by the National Institute of Environmental Health Sciences and U.S. Environmental Protection Agency were required to include a CBPR project. The purpose of this article is to provide a definition and set of CBPR principles, to describe the rationale for and major benefits of using this approach, to draw on the experiences of six of the Children’s Centers in using CBPR, and to provide lessons learned and recommendations for how to successfully establish and maintain CBPR partnerships aimed at enhancing our understanding and addressing the multiple determinants of children’s health. PMID:16203263

  6. Undergraduate research in geochemistry at a larger university: developing a community of undergraduate and graduate researchers.

    NASA Astrophysics Data System (ADS)

    Ryan, J. G.

    2003-12-01

    Faculty at state research universities can find the paired requirements of establishing research programs and developing a "pipeline" of graduate students to be the most challenging aspects of their jobs, especially with shrinking pools of graduate applicants. These problems may be more acute for laboratory-based geochemists, as few graduate candidates possess the requisite quantitative and chemical backgrounds. The need to "get my research going" at the University of South Florida led me to work primarily with undergraduates, as a) they were available and interested, b) they required no more laboratory training than M.S. students; and c) small-dollar funds were available to support them, both in-house and via NSF REU Supplements. Some senior colleagues argued that this approach would hinder my developing a graduate program as is necessary for tenure. This contention turned out to be untrue. My success in undergraduate research draws funding (in NSF REU Site and disciplinary research grants), has attracted outside MS and Ph.D. candidates, and has retained quality in-house students seeking MS degrees. Students working with me join a laboratory community in which undergraduate and graduate researchers are on equal footing in terms of access to instrumentation and other facilities. I work with all my students, irrespective of rank, as members of a cooperative research group. I encourage and expect that technical instruction I provide to any individual will be passed on to their colleagues, which helps develop a "lab culture" of best practices, and ingrains new knowledge and skills through the act of teaching them to others. Maintaining this research environment requires active recruitment of capable graduate AND undergraduate students, regular monitoring of laboratory practices, and ready availability for consultation and mentoring. One must be cognizant of the differing time commitment issues of undergraduates and graduates, and set research goals appropriately. Undergraduate research projects in which 3-4 students work together to collect necessary data can get around the class vs. research scheduling issues they face as they can share the laboratory workload through the week. Group projects can thus collect larger bodies of data, allowing students to address more substantive problems.

  7. Nontarget effects of chemical pesticides and biological pesticide on rhizospheric microbial community structure and function in Vigna radiata.

    PubMed

    Singh, Sunil; Gupta, Rashi; Kumari, Madhu; Sharma, Shilpi

    2015-08-01

    Intensive agriculture has resulted in an indiscriminate use of pesticides, which demands in-depth analysis of their impact on indigenous rhizospheric microbial community structure and function. Hence, the objective of the present work was to study the impact of two chemical pesticides (chlorpyrifos and cypermethrin) and one biological pesticide (azadirachtin) at two dosages on the microbial community structure using cultivation-dependent approach and on rhizospheric bacterial communities involved in nitrogen cycle in Vigna radiata rhizosphere through cultivation-independent technique of real-time PCR. Cultivation-dependent study highlighted the adverse effects of both chemical pesticide and biopesticide on rhizospheric bacterial and fungal communities at different plant growth stages. Also, an adverse effect on number of genes and transcripts of nifH (nitrogen fixation); amoA (nitrification); and narG, nirK, and nirS (denitrification) was observed. The results from the present study highlighted two points, firstly that nontarget effects of pesticides are significantly detrimental to soil microflora, and despite being of biological origin, azadirachtin exerted negative impact on rhizospheric microbial community of V. radiata behaving similar to chemical pesticides. Hence, such nontarget effects of chemical pesticide and biopesticide in plants' rhizosphere, which bring out the larger picture in terms of their ecotoxicological effect, demand a proper risk assessment before application of pesticides as agricultural amendments. PMID:25801369

  8. 2012 CELLULAR & MOLECULAR FUNGAL BIOLOGY GORDON RESEARCH CONFERENCE, JUNE 17 - 22, 2012

    SciTech Connect

    Judith Berman

    2012-06-22

    The Gordon Research Conference on CELLULAR & MOLECULAR FUNGAL BIOLOGY was held at Holderness School, Holderness New Hampshire, June 17 - 22, 2012. The 2012 Gordon Conference on Cellular and Molecular Fungal Biology (CMFB) will present the latest, cutting-edge research on the exciting and growing field of molecular and cellular aspects of fungal biology. Topics will range from yeast to filamentous fungi, from model systems to economically important organisms, and from saprophytes and commensals to pathogens of plants and animals. The CMFB conference will feature a wide range of topics including systems biology, cell biology and morphogenesis, organismal interactions, genome organisation and regulation, pathogenesis, energy metabolism, biomass production and population genomics. The Conference was well-attended with 136 participants. Gordon Research Conferences does not permit publication of meeting proceedings.

  9. Two Methods for Engaging with the Community in Setting Priorities for Child Health Research: Who Engages?

    PubMed Central

    McKenzie, Anne; Hancock, Kirsten; Haines, Hayley; Christensen, Daniel; Zubrick, Stephen R.

    2015-01-01

    Objective The aims of this study were to assess participatory methods for obtaining community views on child health research. Background Community participation in research is recognised as an important part of the research process; however, there has been inconsistency in its implementation and application in Australia. The Western Australian Telethon Kids Institute Participation Program employs a range of methods for fostering active involvement of community members in its research. These include public discussion forums, called Community Conversations. While participation levels are good, the attendees represent only a sub-section of the Western Australian population. Therefore, we conducted a telephone survey of randomly selected households to evaluate its effectiveness in eliciting views from a broader cross-section of the community about our research agenda and community participation in research, and whether the participants would be representative of the general population. We also conducted two Conversations, comparing the survey as a recruitment tool and normal methods using the Participation Program. Results While the telephone survey was a good method for eliciting community views about research, there were marked differences in the profile of study participants compared to the general population (e.g. 78% vs 50% females). With a 26% response rate, the telephone survey was also more expensive than a Community Conversation. The cold calling approach proved an unsuccessful recruitment method, with only two out of a possible 816 telephone respondents attending a Conversation. Conclusion While the results showed that both of the methods produced useful input for our research program, we could not conclude that either method gained input that was representative of the entire community. The Conversations were relatively low-cost and provided more in-depth information about one subject, whereas the telephone survey provided information across a greater range of subjects, and allowed more quantitative analysis. PMID:25938240

  10. Striving to provide opportunities for farm worker community participation in research.

    PubMed

    Crowe, J L; Keifer, M C; Salazar, M K

    2008-04-01

    Hispanic farm workers and their families in the U.S. face a number of environmental and occupational health risks, yet they are rarely given the opportunity to choose the focus of the research and interventions that take place in their communities. Community-based participatory research (CBPR) can be one effective approach to changing this situation. CBPR is an approach to research that makes community members partners in research rather than subjects of research. This article describes the experience of El Proyecto Bienestar (The Well-Being Project), a CBPR project in the Yakima Valley, Washington, with the aim of facilitating the Hispanic community's involvement in the identification and prioritization of occupational and environmental health issues among farm workers. The project utilized three forms of data collection (key informant interviews, community surveys, and a town hall meeting) to create a list of environmental and occupational health issues of concern. Investigators strove to provide opportunities for community participation in the various stages of research: study concept and design, data collection, data analysis and interpretation, conclusions, and dissemination of results. This article describes the involvement that community members had at each stage of the three forms of data collection and outlines the basic findings that led the Community Advisory Board to prioritize four areas for future work. In addition, it describes the challenges the project faced from the researcher perspective. Using examples from this experience, we conclude that this model may be an effective way for farm workers and their families to have a voice in prioritizing health and safety issues for research and action in their communities. PMID:18524285

  11. USDA-ARS RESEARCH ON BIOLOGICAL CONTROL OF ARTHROPODS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    During 1999-2001, ARS scientists published over 100 papers on biocontrol of 30 insect pests. These papers address issues crucial to the three strategies of biological control: conservation, augmentation, and introduction. ARS scientists have been very active in determining the effects of pesticides...

  12. Gross's Anatomy: Textual Politics in Science/Biology Education Research

    ERIC Educational Resources Information Center

    Reis, Giuliano

    2009-01-01

    In approaching how the grotesque is--or should be--situated within contemporary science (biology) education practices, Weinstein and Broda undertake a passionate reclaim of an education that is at the same time scientific, critical, and liberatory. However legitimate, their work offers more than they probably could have anticipated: It exemplifies…

  13. Engaging Biology Undergraduates in the Scientific Process through Writing a Theoretical Research Proposal

    ERIC Educational Resources Information Center

    Stanford, Jennifer S.; Duwel, Laura E.

    2013-01-01

    It has been suggested that research experiences are an important element that should be included in all undergraduate Biology curricula. This is a difficult suggestion to accommodate due to issues with cost, space and time. We addressed this challenge through development of a capstone project in which Biology majors work in groups to develop novel…

  14. NORTHERN CALIFORNIA ENTOMOLOGY SOCIETY Dr. Harry H. Laidlaw, Jr., Honey Bee Research Facility (Bee Biology)

    E-print Network

    Ishida, Yuko

    NORTHERN CALIFORNIA ENTOMOLOGY SOCIETY Dr. Harry H. Laidlaw, Jr., Honey Bee Research Facility (Bee Biology) Honey Bee Road, UC Davis Campus From the east: Take I-80 through Davis to the Hwy 113 North on Hopkins Road. Proceed south on Hopkins to the end of the farm field on the left. Turn left on Bee Biology

  15. The Effects of Restructuring Biology Teaching by a Constructivist Teaching Approach: An Action Research.

    ERIC Educational Resources Information Center

    Lin, Wan-Ju

    This study reports on the improvement of a teacher researcher's teaching practice by adopting a constructivist teaching approach. Four biology units on the nervous system, human circulatory system, evolution, and vertebrate classification were selected to illustrate a model of biology teaching. Data were drawn from student responses to…

  16. The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection

    PubMed Central

    Rigden, Daniel J.; Fernández-Suárez, Xosé M.; Galperin, Michael Y.

    2016-01-01

    The 2016 Database Issue of Nucleic Acids Research starts with overviews of the resources provided by three major bioinformatics centers, the U.S. National Center for Biotechnology Information (NCBI), the European Bioinformatics Institute (EMBL-EBI) and Swiss Institute for Bioinformatics (SIB). Also included are descriptions of 62 new databases and updates on 95 databases that have been previously featured in NAR plus 17 previously described elsewhere. A number of papers in this issue deal with resources on nucleic acids, including various kinds of non-coding RNAs and their interactions, molecular dynamics simulations of nucleic acid structure, and two databases of super-enhancers. The protein database section features important updates on the EBI's Pfam, PDBe and PRIDE databases, as well as a variety of resources on pathways, metabolomics and metabolic modeling. This issue also includes updates on popular metagenomics resources, such as MG-RAST, EBI Metagenomics, and probeBASE, as well as a newly compiled Human Pan-Microbe Communities database. A significant fraction of the new and updated databases are dedicated to the genetic basis of disease, primarily cancer, and various aspects of drug research, including resources for patented drugs, their side effects, withdrawn drugs, and potential drug targets. A further six papers present updated databases of various antimicrobial and anticancer peptides. The entire Database Issue is freely available online on the Nucleic Acids Research website (http://nar.oxfordjournals.org/). The NAR online Molecular Biology Database Collection, http://www.oxfordjournals.org/nar/database/c/, has been updated with the addition of 88 new resources and removal of 23 obsolete websites, which brought the current listing to 1685 databases.

  17. Partnering to Harmonize IRBs for Community-Engaged Research to Reduce Health Disparities

    PubMed Central

    Hammatt, Zoë H.; Nishitani, Junko; Heslin, Kevin C.; Perry, M. Theresa; Szetela, Carolyn; Jones, Loretta; Williams, Pluscedia; Antoine-LaVigne, Donna; Forge, Nell G.; Norris, Keith C.

    2013-01-01

    Emerging advances in health disparities research include controlled trials and comparative effectiveness studies that are frequently conducted at multiple community and academic sites. Review by different institutional review boards (IRBs) presents a major impediment to the timely and effective conduct of such research. When research involves minority and underserved communities as well as multiple geographic regions, institutional requirements and interpretation of ethical standards may vary substantially. Such variations can complicate the informed consent process and research protocol, and may undermine participant respect and trial quality. In addition, multiple IRB review can lead to unnecessary delays, jeopardizing funding and capacity to perform collaborative projects. In response to these issues, the Research Centers in Minority Institutions (RCMI) Translational Research Network (RTRN) is developing a community-partnered approach to streamlining IRB review across its consortium of 18 RCMI grantee institutions that will ensure compliance while enhancing the quality of health disparities research. PMID:22102302

  18. Introduction to Ecological Description of a Community Intervention: Building Prevention through Collaborative Field Based Research

    PubMed Central

    Allen, James; Mohatt, Gerald V.

    2014-01-01

    This special issue of the American Journal of Community Psychology is the result of a 18-year partnership with Alaska Native communities using collaborative field based research methods. Its goal is to provide a case study fulfilling the spirit of ecological inquiry, offering a detailed and nuanced description of a community intervention. The articles describe the nature of our work, including some of our successes, as well as challenges, dilemmas, and even disappointments we experienced along the way. Our primary aim was to develop and assess the feasibility of a complex, multi-level intervention to increase protective factors hypothesized to reduce suicide and alcohol abuse among rural Yup’ik Alaska Native youth ages 12 to 18. The articles that follow include descriptions of the cultural context, relevant literature and project history, our methods of community engagement in measurement development strategies, an empirical test of the prevention model that guided the intervention, the development and implementation of the intervention, a feasibility and impact assessment, and an evaluation of community engagement. A final article summarizes what is generalizable from the work in field based intervention research with rural and culturally distinct populations, and future prospects for decolonizing community intervention research methods. These papers raise important issues, including (1) need for deep, contextual ecological descriptions, (2) reconceptualization of time in the research relationship, (3) distinctions between populations and communities, and (4) the conflict between values of communities and intervention science. PMID:24912872

  19. Recruitment Strategies and Costs Associated with Community-Based Research in a Mexican-Origin Population

    ERIC Educational Resources Information Center

    Mendez-Luck, Carolyn A.; Trejo, Laura; Miranda, Jeanne; Jimenez, Elizabeth; Quiter, Elaine S.; Mangione, Carol M.

    2011-01-01

    Purpose: We describe the recruitment strategies and personnel and materials costs associated with two community-based research studies in a Mexican-origin population. We also highlight the role that academic-community partnerships played in the outreach and recruitment process for our studies. We reviewed study documents using case study…

  20. Community-Based Participatory Research to Improve Preconception Health among Northern Plains American Indian Adolescent Women

    ERIC Educational Resources Information Center

    Richards, Jennifer; Mousseau, Alicia

    2012-01-01

    Background: Sacred Beginnings is a community-based participatory research project that examines the effectiveness of a culturally appropriate preconception health educational intervention developed by tribal community members and elders. The primary goal is to increase knowledge of preconception health and its benefits among adolescent females and…

  1. Advising Graduate Students Doing Community-Engaged Dissertation Research: The Advisor-Advisee Relationship

    ERIC Educational Resources Information Center

    Jaeger, Audrey J.; Sandmann, Lorilee R.; Kim, Jihyun

    2011-01-01

    A critical dimension in the development of emerging community-engaged scholars is the advisor-advisee relationship during the student's doctoral degree program. A qualitative study of four doctoral students interested in doing community-engaged dissertation research, and their advisors, identified five characteristics of such relationships: (1)…

  2. A Review of Research on Effective Community Programs for English Language Learners

    ERIC Educational Resources Information Center

    Tellez, Kip; Waxman, Hersh C.

    2010-01-01

    This article synthesized current research on effective communities for English Language Learners (ELLs). The findings are discussed under the following categories: parents, community resources, and peers. The results of the review indicate that parenting programs are effective, but they must be carefully developed and often require specific…

  3. Rural Community Input to School District Strategic Planning: An Action Research Model Using Focus Groups

    ERIC Educational Resources Information Center

    Winand, Brent L.; Edlefson, Carla

    2008-01-01

    A rural superintendent used action research principles in conducting a series of focus groups with community members, students, and staff. The focus group data informed strategic planning. At the end of a carefully designed process, district administrators found more agreement among residents than they had expected. Community members were grateful…

  4. COMMUNITY ECOLOGY -ORIGINAL RESEARCH The effect of chronic seaweed subsidies on herbivory

    E-print Network

    Ishida, Yuko

    COMMUNITY ECOLOGY - ORIGINAL RESEARCH The effect of chronic seaweed subsidies on herbivory: plant ecosystems worldwide and have important consequences for the structure of ecological communities. While. Wright Á T. W. Schoener Department of Evolution and Ecology, University of California, Davis, One Shields

  5. Appreciative Inquiry as a Mode of Action Research for Community Psychology

    ERIC Educational Resources Information Center

    Boyd, Neil M.; Bright, David S.

    2007-01-01

    In this article, the authors highlight the potential for rethinking approaches to community and social change interventions that draw on participatory action research at the organizational and community level. They distinguish problem-centric from opportunity-centric approaches to social change. Theory on social norms suggests that problem-centric…

  6. Exploring the Benefits of Community-Based Research in a Sociology of Sexualities Course

    ERIC Educational Resources Information Center

    Bach, Rebecca; Weinzimmer, Julianne

    2011-01-01

    The benefits of community-based research (CBR) in the sociology classroom go beyond those associated with traditional service learning. Here, students use their sociological skills to examine and propose solutions to local social problems addressed by community organizations. Through analyzing students' course reflection journals and the results…

  7. COMMUNITY ECOLOGY -ORIGINAL RESEARCH Direct versus indirect effects of habitat fragmentation

    E-print Network

    With, Kimberly A.

    COMMUNITY ECOLOGY - ORIGINAL RESEARCH Direct versus indirect effects of habitat fragmentation / Accepted: 27 March 2012 / Published online: 12 April 2012 Ó Springer-Verlag 2012 Abstract Habitat area of habitat area and fragmentation on arthropod community patterns in red clover (Trifolium pratense

  8. Respecting and Protecting Our Relationships: A Community Research HIV Prevention Program for Teen Fathers and Mothers

    ERIC Educational Resources Information Center

    Lesser, Janna; Verdugo, Robert L.; Koniak-Griffin, Deborah; Tello, Jerry; Kappos, Barbara; Cumberland, William G.

    2005-01-01

    This article describes a two-phase community and academic collaboration funded by the California Collaborative Research Initiative to develop and test the feasibility of an innovative HIV prevention program relevant to the needs of the population of inner-city Latino teen parenting couples and realistic for implementation in community settings.…

  9. Urban Indian Voices: A Community-Based Participatory Research Health and Needs Assessment

    ERIC Educational Resources Information Center

    Johnson, Chad V.; Bartgis, Jami; Worley, Jody A.; Hellman, Chan M.; Burkhart, Russell

    2010-01-01

    This community-based participatory research (CBPR) project utilized a mixed-methods survey design to identify urban (Tulsa, OK) American Indian (AI) strengths and needs. Six hundred fifty AIs (550 adults and 100 youth) were surveyed regarding their attitudes and beliefs about their community. These results were used in conjunction with other…

  10. Labor Market Returns to Community College: Evidence from North Carolina. Research Brief

    ERIC Educational Resources Information Center

    Belfield, Clive; Liu, Yuen Ting; Trimble, Madeline Joy

    2014-01-01

    In this brief, we summarize our research on the wage returns to community college pathways in North Carolina. We use detailed individual and college transcript information on approximately 830,000 students who attended community college during the 2000s. This transcript data is matched with earnings data from Unemployment Insurance records. We…

  11. Community Colleges Tackle Student Health and HIV/AIDS. AACC Research Brief.

    ERIC Educational Resources Information Center

    Ottenritter, Nan; Barnett, Lynn

    This research brief summarizes the findings of a survey conducted in 1996 to determine the involvement of community colleges in the health of their students. The survey gathered information from 535 campuses concerning administration and leadership, curriculum, and community relationships. This report focuses on HIV/AIDS and the extent to which…

  12. Primary Research Paper Tadpole shrimp structure macroinvertebrate communities in playa lake

    E-print Network

    Willig, Michael

    Primary Research Paper Tadpole shrimp structure macroinvertebrate communities in playa lake microcosms were used to assess whether tadpole shrimp, Triops sp., affect community structure of other native macroinvertebrates in playa lakes of the Southern High Plains of Texas. Removal of tadpole shrimp shortly after

  13. Non-Credit Community Arts Programs: A Comparative Case Study of Three Programs within Research Universities

    ERIC Educational Resources Information Center

    Di Toro, Barbara

    2009-01-01

    The purpose of "Non-credit community arts programs: A comparative case study of three programs within research universities" is to examine the perceptions of the various stakeholders of non-credit community arts programs to determine the perceived benefits received by all stakeholders from the non-credit program, the university, and its…

  14. Problem-Solving Research: Strategic Engagement in Community Development and the Resource Center for Raza Planning.

    ERIC Educational Resources Information Center

    Cordova, Teresa

    2002-01-01

    The Resource Center for Raza Planning (RCRP) at the University of New Mexico helps Mexican American college students use research to meet the needs of their communities. The formation and early development of RCRP are described, followed by its work on policy and planning related to community economic development. Implications for universities…

  15. Linking Research and Practice through Teacher Communities: A Place Where Formal and Practical Knowledge Meet?

    ERIC Educational Resources Information Center

    Pareja Roblin, Natalie N.; Ormel, Bart J. B.; McKenney, Susan E.; Voogt, Joke M.; Pieters, Jules M.

    2014-01-01

    This study characterises the links between research and practice across 12 projects concerned with the collaborative design of lesson plans by teacher communities (TCs). Analyses focused on sources of knowledge used to inform lesson design, participants' roles and knowledge generated by the teacher community. Three patterns emerged pertaining…

  16. Methodological Considerations in Researching Community Services in the Northeast. A Northeast Regional Community Services Study. New Jersey Agricultural Experiment Station Bulletin 836, September 1975.

    ERIC Educational Resources Information Center

    Derr, Donn A., Ed.; And Others

    Documenting several elements relative to regional research on community services in 10 northeastern states as experienced in the U.S. Department of Agriculture's Regional Research Project NE-77 (1971), this monograph represents the NE-77 technical committee's effort to identify basic research issues re: the delivery of community services in rural…

  17. Changing an urban community through health research: a South African case study.

    PubMed

    Plagerson, Sophie E; Mathee, Angela

    2012-05-01

    This article reflects on a positive example of health research translation. Research conducted in a disadvantaged urban community in Johannesburg by the World Health Organization Collaborating Centre for Urban Health as part of the Health Environment and Development study led to a number of community-led health promotion initiatives. Using the Research and Policy in International Development framework for analyzing the links between research and practice, the process and outcomes that have transformed local approaches to health are reviewed. Lessons learned may prove useful to others seeking to use health research to influence local approaches to health. PMID:21444923

  18. Ontology-supported research on vaccine efficacy, safety and integrative biological networks.

    PubMed

    He, Yongqun

    2014-07-01

    While vaccine efficacy and safety research has dramatically progressed with the methods of in silico prediction and data mining, many challenges still exist. A formal ontology is a human- and computer-interpretable set of terms and relations that represent entities in a specific domain and how these terms relate to each other. Several community-based ontologies (including Vaccine Ontology, Ontology of Adverse Events and Ontology of Vaccine Adverse Events) have been developed to support vaccine and adverse event representation, classification, data integration, literature mining of host-vaccine interaction networks, and analysis of vaccine adverse events. The author further proposes minimal vaccine information standards and their ontology representations, ontology-based linked open vaccine data and meta-analysis, an integrative One Network ('OneNet') Theory of Life, and ontology-based approaches to study and apply the OneNet theory. In the Big Data era, these proposed strategies provide a novel framework for advanced data integration and analysis of fundamental biological networks including vaccine immune mechanisms. PMID:24909153

  19. Masters of Sciences in Biological Sciences Plan of Study for Students in All Research Concentrations

    E-print Network

    Walker, Lawrence R.

    Masters of Sciences in Biological Sciences Plan of Study for Students in All Research per academic year) · Participate in Biol 790 (Research Colloquium in Life Sciences) each semester year) · Participate in Biol 790 (Research Colloquium in Life Sciences) each semester · Convene Annual

  20. Doctor in Philosophy in Biological Sciences Plan of Study for Students in All Research Concentrations

    E-print Network

    Walker, Lawrence R.

    Doctor in Philosophy in Biological Sciences Plan of Study for Students in All Research per academic year) · Participate in Biol 790 (Research Colloquium in Life Sciences) each semester Colloquium in Life Sciences) each semester · Convene annual Research Advisory Committee meeting to discuss