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Sample records for changing redox conditions

  1. Modeling CO2 sediment-water flux variations connected with changes of redox conditions

    NASA Astrophysics Data System (ADS)

    Yakushev, Evgeniy; Protsenko, Elizaveta

    2013-04-01

    Changes of bottom redox conditions from oxic to hypoxic, suboxic and anoxic affect rates of sediment-water fluxes of chemical parameters, i.e. oxygen, nutrient (including carbon), redox metals. Chemosynthetic organic matter production in suboxic and anoxic conditions additionally affects transformation of carbon. This work aimed in estimation of a potential influence of changes of the bottom redox conditions on the sediment -water fluxes of carbon. We use a 1-dimensional C-N-P-Si-O-S-Mn-Fe vertical transport-reaction model describing both the sediments and bottom boundary layers coupled with biogeochemical block simulating changeable redox conditions, and the carbonate system processes block. A biogeochemical block is based on ROLM (RedOx Layer Model), that was constructed to simulate basic features of the water column biogeochemical structure changes in oxic, anoxic and changeable conditions (Yakushev et al., 2007). Organic matter formation and decay, reduction and oxidation of species of nitrogen, sulfur, manganese, iron, and the transformation of phosphorus species are parameterized in the model. The model includes blocks for phytoplankton, zooplankton, aerobic autotrophic and heterotrophic bacteria and anaerobic autotrophic and heterotrophic bacteria. In this study we additionally parameterized transformation of Si and C and forms of alkalinity. We simulate changes in the bottom boundary layer pH in different redox conditions under the same leakage scenario.

  2. Redox Conditions and Related Color Change in Eastern Equatorial Pacific Sediments: IODP Site U1334

    NASA Astrophysics Data System (ADS)

    Kordesch, W. E.; Gussone, N. C.; Hathorne, E. C.; Kimoto, K.; Delaney, M. L.

    2011-12-01

    This study was prompted by a 65 m thick brown-green color change in deep-sea sediments of IODP Site U1334 (0-38 Ma, 4799 m water depth) that corresponds to its equatorial crossing (caused by the Northward movement of the pacific plate). Green sediment is a visual indicator of reducing conditions in sediment due to enhanced organic matter deposition and burial. Here we use geochemical redox indicators to characterize the effect of equatorial upwelling on bottom water. The modern redox signal is captured in porewater profiles (nitrate, manganese, iron, sulfate) while trace metal Enrichment Factors (EF) in bulk sediment (manganese, uranium, molybdenum, rhenium) normalized to the detrital component (titanium) record redox state at burial. To measure export productivity we also measure biogenic barium. Porewater profiles reveal suboxic diagenesis; profiles follow the expected sequence of nitrate, manganese oxide, and iron oxide reduction with increasing depth. Constant sulfate (~28 μM) implies anoxia has not occurred. Bulk sediment Mn EF are enriched (EF > 1) throughout the record (Mn EF = 15-200) while U and Mo enrichment corresponds to green color and equatorial proximity (U EF = 4-19; Mo EF = 0-7). Constant Mn enrichment implies continuous oxygenation. Uranium and Mo enrichment near the equator represents suboxic conditions also seen in the porewater. Low Re concentrations (below detection) provide additional evidence against anoxia. A comparison of Mn EF from total digestions to samples treated with an additional reductive cleaning step distinguishes between Mn-oxides and Mn-carbonates, indicating oxygenated and reducing conditions respectively. Mn-carbonate occurrence agrees with U and Mo EF; conditions were more reducing near the equator. Bio-Ba shows significant variability over this interval (22-99 mmol g-1). Our geochemical results indicate that bottom waters became suboxic at the equator as a result of equatorial upwelling-influenced increases in organic

  3. Effects of changing redox conditions on the dynamics of dissolved organic matter and CO2 in paddy soils

    NASA Astrophysics Data System (ADS)

    Hanke, Alexander; Cao, Zhi Hong; Liu, Qin; Muhr, Jan; Kalbitz, Karsten

    2010-05-01

    The current knowledge about dissolved organic matter (DOM) dynamics in soils and its dependence on different C pools based mainly on observations and experiments in aerobic environments. We have only a limited understanding about the effects of changing redox conditions on production and composition of DOM although this fraction of soil organic matter is important for greenhouse gas emission and carbon storage in soils. In many ecosystems temporal and spatial changes of oxic and anoxic conditions are evident and might even increase in future. It is assumed that changing redox conditions are the key drivers of DOM dynamics in such ecosystems. More detailed we tested the following hypotheses: Anoxic conditions result in relative DOM accumulation due to less mineralization of already produced DOM Close relationship between DOM production and CO2 emission 14C signature of CO2 enables the identification of different C pools degraded at oxic and anoxic conditions We chose paddy soils as a model ecosystem because these soils are anoxic during the rice growing period and oxic during harvest and growth of other crops. Furthermore, paddy soils have oxic and anoxic horizons. Soils of a unique chronosequence of paddy soil evolution (50 to 2000 years, China) were studied in direct comparison to non-paddy soils of the same age. In these soils, exposed to different redox conditions over defined periods of times, the dynamics of DOM, CO2, 14C of the CO2 and other redox sensitive elements were followed in laboratory experiments. In the latter redox conditions were changed every 3 weeks from oxic to anoxic and vice versa. Besides analysis of the composition of the soil solution and the gas phase we determined differences in C pools being respired at oxic and anoxic conditions by 14C AMS of the CO2. The measured redox potentials of -50 mV to 250mV at anoxic conditions and 350 mV to 550 mV at oxic conditions were in the expected range and proofed the appropriate setting of the chosen

  4. Rapid changes in the redox conditions of the western Tethys Ocean during the early Aptian oceanic anoxic event

    NASA Astrophysics Data System (ADS)

    Westermann, Stéphane; Stein, Melody; Matera, Virginie; Fiet, Nicolas; Fleitmann, Dominik; Adatte, Thierry; Föllmi, Karl B.

    2013-11-01

    The early Aptian (125 to 121 Ma) records an episode of severe environmental change including a major perturbation of the carbon cycle, an oceanic anoxic event (OAE 1a, 122.5 Ma), a platform drowning episode and a biocalcification crisis. We propose to trace changes in the oxygenation state of the ocean during the early Aptian anoxic event using the redox-sensitive trace-element (RSTE) distribution, phosphorus accumulation rates (PARs) and organic-matter characterization in three different basins of the western Tethys. The following sections have been investigated: Gorgo a Cerbara (central Italy) in the Umbria Marche basin, Glaise (SE France) in the Vocontian basin and Cassis/La Bédoule (SE France) located in the Provencal basin. In the Gorgo a Cerbara section, RSTE distributions show a low background level along the main part of the section, contrasted by different maxima in concentrations within the Selli level. In the Glaise section, the Goguel level displays a weak increase in RSTE contents coeval with moderate TOC values. At Cassis/La Bédoule, no significant RSTE enrichments have been observed in sediments equivalent to the Selli level. These differences in the records of the geochemical proxies of the Selli level or its equivalent indicate the deposition under different redox conditions, probably related to the paleogeography. Our data indicate the development of anoxic-euxinic conditions in the deeper part of the Tethys during OAE 1a, whereas in the shallower environments, conditions were less reducing. Moreover, at Gorgo a Cerbara, the Selli level is characterized by rapid changes in the intensity of reducing conditions in the water column. Ocean eutrophication seems to be a major factor in the development and the persistence of anoxia as suggested by the PAR evolution. Higher PAR values at the onset of OAE 1a suggest an increase in nutrient input, whereas the return to lower values through the first part of the OAE 1a interval may be related to the

  5. Redox conditions for mantle plumes

    NASA Astrophysics Data System (ADS)

    Heister, L. E.; Lesher, C. E.

    2005-12-01

    The vanadium to scandium ratio (V/Sc) for basalts from mid-ocean ridge (MOR) and arc environments has been proposed as a proxy for fO2 conditions during partial melting (e.g. [1] and [2]). Contrary to barometric measurements of the fO2 of primitive lavas, the V/Sc ratio of the upper mantle at mid-ocean ridges and arcs is similar, leading previous authors to propose that the upper mantle has uniform redox potential and is well-buffered. We have attempted to broaden the applicability of the V/Sc parameter to plume-influenced localities (both oceanic and continental), where mantle heterogeneities associated with recycled sediments, mafic crust, and metasomatized mantle, whether of shallow or deep origin, exist. We find that primitive basalts from the North Atlantic Igneous Province (NAIP), Hawaii (both the Loa and Kea trends), Deccan, Columbia River, and Siberian Traps show a range of V/Sc ratios that are generally higher (average ~9) than those for MOR (average ~ 6.7) or arc (average ~7) lavas. Based on forward polybaric decompression modeling, we attribute these differences to polybaric melting and melt segregation within the garnet stability field rather than the presence of a more oxidized mantle in plume-influenced settings. Like MORB, the V/Sc ratios for plume-influenced basalts can be accounted for by an oxidation state approximately one log unit below the Ni-NiO buffer (NNO-1). Our analysis suggests that source heterogeneities have little, if any, resolvable influence on mantle redox conditions, although they have significant influence on the trace element and isotopic composition of mantle-derived melts. We suggest that variations in the redox of erupted lavas is largely a function of shallow lithospheric processes rather than intrinsic to the mantle source, regardless of tectonic setting. [1] Li and Lee (2004) EPSL, [2] Lee et al. (2005) J. of Petrology

  6. Minor Elements in Nakhlite Pyroxenes: Does Cr Record Changes in REDOX Conditions during Crystallization?

    NASA Technical Reports Server (NTRS)

    McKay, G.; Schwandt, C.; Le, L.; Mikouchi, T.

    2007-01-01

    Nakhlites are olivine-bearing clinopyroxene cumulates. Based on petrographic characteristics, they may be divided into groups that cooled at different rates and may have been formed at different depths in a single flow. The order of cooling rate from slowest to fastest is NWA998conditions under which these samples crystallized. Thus it is important to understand the major and minor element zoning in the cumulus pyroxenes. While major elements are nearly homogeneous, minor elements exhibit distinctive zoning patterns that vary from one nakhlite to another. This abstract reports unusual Cr zoning patterns in pyroxenes from MIL03346 (MIL) and contrast these with pyroxenes from Y593 and Nakhla.

  7. Method for characterization of the redox condition of cementitious materials

    SciTech Connect

    Almond, Philip M.; Langton, Christine A.; Stefanko, David B.

    2015-12-22

    Disclosed are methods for determining the redox condition of cementitious materials. The methods are leaching methods that utilize an in situ redox indicator that is present in the cementitious materials as formed. The in situ redox indicator leaches from cementitious material and, when the leaching process is carried out under anaerobic conditions can be utilized to determine the redox condition of the material. The in situ redox indicator can exhibit distinct characteristics in the leachate depending upon the redox condition of the indicator.

  8. Changes in depth-transect redox conditions spanning the end-Permian mass extinction and their impact on the marine extinction: Evidence from biomarkers and sulfur isotopes

    NASA Astrophysics Data System (ADS)

    Kaiho, Kunio; Oba, Masahiro; Fukuda, Yoshihiko; Ito, Kosuke; Ariyoshi, Shun; Gorjan, Paul; Riu, Yuqing; Takahashi, Satoshi; Chen, Zhong-Qiang; Tong, Jinnan; Yamakita, Satoshi

    2012-08-01

    Changes in redox conditions during the Changhsingian to Griesbachian spanning the end-Permian mass extinction were recently reported based on analyses of organic molecules. We provide more precise organic-molecular data, that detail redox conditions spanning the end-Permian mass extinction at different palaeowater depths in the neritic Palaeotethys (estimated water depths: 10, 40, 100, and 200 m; Bulla, Huangzhishan, Meishan, and Chaohu sections, respectively) during this period. Here we propose that a change from occasional euxinia to anoxia in the shallow Palaeotethys occurred at the time of the mass extinction intercalated with oxic pulses. The second extinction at 0.7 myr after the main extinction was also caused by anoxia. New and published sulfur-isotope ratios (34S/32S) measured in carbonate-associated sulfate from the neritic Palaeotethys and in sulfide from pelagic central Panthalassa sediments show high values during the Changhsingian, consistent with the development of euxinia. The mass extinction coincided with a global fall in δ34S values, as well as a shift in δ13C values, indicating a global oxidation of H2S. This organic and isotopic geochemistry implies that accumulation of hydrogen sulfide in intermediate and deep waters followed by oxidation of hydrogen sulfide led to dissolved oxygen consumption, surface-water anoxia, and acidification, resulting in the end-Permian mass extinction in the seas.

  9. Multiple redox states of multiheme cytochromes may enable bacterial response to changing redox environments

    NASA Astrophysics Data System (ADS)

    Arbour, T.; Wrighton, K. C.; Mullin, S. W.; Castelle, C.; Luef, B.; Gilbert, B.; Banfield, J. F.

    2013-12-01

    Multiheme c-type cytochromes (MHCs) are key components in electron-transport pathways that enable some microorganisms to transfer electron byproducts of metabolism to a variety of minerals. As a response to changes in mineral redox potential, microbial communities may shift their membership, or individual organisms may adjust protein expression. Alternatively, the ability to respond may be conferred by the innate characteristics of certain electron-transport-chain components. Here, we used potentiostat-controlled microbial fuel cells (MFCs) to measure the timescale of response to imposed changes in redox conditions, thus placing constraints on the importance of these different mechanisms. In the experiments, a solid electrode acts as an electron-accepting mineral whose redox potential can be precisely controlled. We inoculated duplicate MFCs with a sediment/groundwater mixture from an aquifer at Rifle, Colorado, supplied acetate as an electron donor, and obtained stable, mixed-species biofilms dominated by Geobacter and a novel Geobacter-related family. We poised the anode at potentials spanning the range of natural Fe(III)-reduction, then performed cyclic voltammetry (CV) to characterize the overall biofilm redox signature. The apparent biofilm midpoint potential shifted directly with anode set potential when the latter was changed within the range from about -250 to -50 mV vs. SHE. Following a jump in set potential by 200 mV, the CV-midpoint shift by ~100 mV over a timescale of ~30 minutes to a few hours, depending on the direction of the potential change. The extracellular electron transfer molecules, whose overall CV signature is very similar to those of purified MHCs, appear to span a broad redox range (~200 mV), supporting the hypothesis that MHCs confer substantial redox flexibility. This flexibility may be a principle reason for the abundance of MHCs expressed by microorganisms capable of extracellular electron transfer to minerals.

  10. Modelling sulfamethoxazole degradation under different redox conditions

    NASA Astrophysics Data System (ADS)

    Sanchez-Vila, X.; Rodriguez-Escales, P.

    2015-12-01

    Sulfamethoxazole (SMX) is a low adsorptive, polar, sulfonamide antibiotic, widely present in aquatic environments. Degradation of SMX in subsurface porous media is spatially and temporally variable, depending on various environmental factors such as in situ redox potential, availability of nutrients, local soil characteristics, and temperature. It has been reported that SMX is better degraded under anoxic conditions and by co-metabolism processes. In this work, we first develop a conceptual model of degradation of SMX under different redox conditions (denitrification and iron reducing conditions), and second, we construct a mathematical model that allows reproducing different experiments of SMX degradation reported in the literature. The conceptual model focuses on the molecular behavior and contemplates the formation of different metabolites. The model was validated using the experimental data from Barbieri et al. (2012) and Mohatt et al. (2011). It adequately reproduces the reversible degradation of SMX under the presence of nitrite as an intermediate product of denitrification. In those experiments degradation was mediated by the transient formation of a diazonium cation, which was considered responsible of the substitution of the amine radical by a nitro radical, forming the 4-nitro-SMX. The formation of this metabolite is a reversible process, so that once the concentration of nitrite was back to zero due to further advancement of denitrification, the concentration of SMX was fully recovered. The forward reaction, formation of 4-nitro SMX, was modeled considering a kinetic of second order, whereas the backward reaction, dissociation of 4-nitro-SMX back to the original compound, could be modeled with a first order degradation reaction. Regarding the iron conditions, SMX was degraded due to the oxidation of iron (Fe2+), which was previously oxidized from goethite due to the degradation of a pool of labile organic carbon. As the oxidation of iron occurred on the

  11. Redox Conditions Among the Terrestrial Planets

    NASA Technical Reports Server (NTRS)

    Jones, J. H.

    2004-01-01

    Early solar system conditions should have been extremely reducing. The redox state of the early solar nebula was determined by the H2O/H2 of the gas, which is calculated (based on solar composition) to have been about IW-5. At high temperature under such conditions, ferrous iron would exist only as a trace element in silicates and the most common type of chondritic material should have been enstatite chondrites. The observation that E-chondrites form only a subset of the chondrite suite and that the terrestrial planets (Earth, Moon, Mars, Venus, 4 Vesta) contain ferrous and ferric iron as major and minor elements, respectively, implies that either most chondritic materials formed under conditions that were not solar or that early-formed metals oxidized at low temperature, producing FeO. For example, equilibrated ordinary chondrites (by definition, common chondritic materials), by their phase assemblage of olivine, orthopyroxene and metal, must fall not far from the QFI (Quartz-Fayalite-Iron) oxygen buffer. The QFI buffer is about IW-0.5 and, as we shall see, this fo2 is close to that inferred for many materials in the inner solar system.

  12. New lab scale approaches for quantification of redox conditions

    NASA Astrophysics Data System (ADS)

    Fernandez, P. M.; Dathe, A.; Nadeem, S.; Bakken, L. R.; Bloem, E.; French, H. K.; Binley, A. M.

    2013-12-01

    Degradation of organic chemicals in the unsaturated zone is a process highly relevant for developing remediation techniques for protecting groundwater. Degradation causes changes in chemical composition of the water phase and gas releases. These changes can potentially be mapped with electrical resistivity measurements in the bulk soil and gas measurements at the soil surface. The redox potential combined with the local geological conditions determines the composition of available electron acceptors as well as microbial degradation pathways and how the soil system is affected in the long term. After oxygen and nitrate are depleted, manganese and iron should be reduced. However, in experiments conducted in the unsaturated zone at Gardermoen airport, Norway, it was found that for the degradation of the de-icing agent propylene glycol (PG), manganese and iron were preferred over nitrate as electron acceptor. A key hypothesis for the work presented is that for a designated soil, the redox potential affects gas releases and soil solution composition profoundly. As the redox potential decreases, the reactants of the degradation change and therefore the composition of the soil-water system changes. These changes can be quantified dynamically by gas measurements and changes in electrical conductivity of the pore water and electrical resistivity of the bulk soil. Batch experiments were conducted to examine whether nitrate is a preferred electron acceptor over iron and manganese oxides as described in classical redox reaction theory. Gas releases during PG and glutamate degradation were measured in a sandy pristine soil with and without nitrate under anaerobic condition during two weeks of incubation. Chemical reactions were quantified with the modelling tool ORCHESTRA. We are currently investigating whether dynamical measurements of electrical conductivity and bulk resistivity are suited to trace which electron acceptors (nitrate, manganese or iron) are being reduced. First

  13. Conformational changes in redox pairs of protein structures

    PubMed Central

    Fan, Samuel W; George, Richard A; Haworth, Naomi L; Feng, Lina L; Liu, Jason Y; Wouters, Merridee A

    2009-01-01

    Disulfides are conventionally viewed as structurally stabilizing elements in proteins but emerging evidence suggests two disulfide subproteomes exist. One group mediates the well known role of structural stabilization. A second redox-active group are best known for their catalytic functions but are increasingly being recognized for their roles in regulation of protein function. Redox-active disulfides are, by their very nature, more susceptible to reduction than structural disulfides; and conversely, the Cys pairs that form them are more susceptible to oxidation. In this study, we searched for potentially redox-active Cys Pairs by scanning the Protein Data Bank for structures of proteins in alternate redox states. The PDB contains over 1134 unique redox pairs of proteins, many of which exhibit conformational differences between alternate redox states. Several classes of structural changes were observed, proteins that exhibit: disulfide oxidation following expulsion of metals such as zinc; major reorganisation of the polypeptide backbone in association with disulfide redox-activity; order/disorder transitions; and changes in quaternary structure. Based on evidence gathered supporting disulfide redox activity, we propose disulfides present in alternate redox states are likely to have physiologically relevant redox activity. PMID:19598234

  14. INFLUENCE OF PH AND REDOX CONDITIONS ON COPPER LEACHING

    EPA Science Inventory

    Leaching behavior of metals from a mineral processing waste at varying pH and redox conditions was studies. Effect of combinations of pH and Eh on leaching of copper is described. Leaching of copper was found to be dependent on both pH and Eh. Higher concentrations of Cu were ...

  15. Microbial Functional Gene Diversity with a Shift of Subsurface Redox Conditions during In Situ Uranium Reduction

    PubMed Central

    Liang, Yuting; Van Nostrand, Joy D.; N′Guessan, Lucie A.; Peacock, Aaron D.; Deng, Ye; Long, Philip E.; Resch, C. Tom; Wu, Liyou; He, Zhili; Li, Guanghe; Hazen, Terry C.; Lovley, Derek R.

    2012-01-01

    To better understand the microbial functional diversity changes with subsurface redox conditions during in situ uranium bioremediation, key functional genes were studied with GeoChip, a comprehensive functional gene microarray, in field experiments at a uranium mill tailings remedial action (UMTRA) site (Rifle, CO). The results indicated that functional microbial communities altered with a shift in the dominant metabolic process, as documented by hierarchical cluster and ordination analyses of all detected functional genes. The abundance of dsrAB genes (dissimilatory sulfite reductase genes) and methane generation-related mcr genes (methyl coenzyme M reductase coding genes) increased when redox conditions shifted from Fe-reducing to sulfate-reducing conditions. The cytochrome genes detected were primarily from Geobacter sp. and decreased with lower subsurface redox conditions. Statistical analysis of environmental parameters and functional genes indicated that acetate, U(VI), and redox potential (Eh) were the most significant geochemical variables linked to microbial functional gene structures, and changes in microbial functional diversity were strongly related to the dominant terminal electron-accepting process following acetate addition. The study indicates that the microbial functional genes clearly reflect the in situ redox conditions and the dominant microbial processes, which in turn influence uranium bioreduction. Microbial functional genes thus could be very useful for tracking microbial community structure and dynamics during bioremediation. PMID:22327592

  16. Evaluation of redox condition by selenium speciation coprecipitated with barite

    NASA Astrophysics Data System (ADS)

    Tokunaga, K.; Takahashi, Y.; Yokoyama, Y.; Omori, E.; Kawagucci, S.

    2012-12-01

    Redox potential (Eh) is an important factor controlling chemical processes in hydrosphere on the earth, because redox reactions are related to the behaviors of many major and minor species in natural waters. The Eh may be estimated by the information of the oxidation states of redox couples (e.g., Fe(II)/Fe(III) ratio) since the Eh value tends to be controlled by the major elements. In this study, we suggest to use selenium (Se) in barite (BaSO4) as a redox indicator for hydrothermal system where barite is precipitated. Barite is stable under a high P-T condition, and this mineral contains various trace elements that may reflect the physicochemical condition of the seawater and hydrothermal water where they were formed. Selenium can occur in the environment in several oxidation states (-2, 0, +4 and +6), but Se in natural waters is mostly found in inorganic forms as oxyanions of selenite [Se(IV)] or selenate [Se(VI)]. The valence ratio of Se depends on the redox condition. Selenium is often found in minerals by substituting a site of sulfur (S) since they are homologous element. Both Se(IV) and Se(VI) may be incorporated into barite because barite is stable under a wide range of the Eh-pH condition which includes Se(IV)-Se(VI) boundary in the Eh-pH diagram. Therefore, the oxidation state of Se in barite can provide more precise information on the redox condition of the depositional environment. The purpose of this study is to establish a method to estimate the redox condition where barite is precipitated. Coprecipitation experiments of Se with barite were conducted to clarify the relationships between Se(VI)/Se(VI) ratio in artificial seawater (ASW) and that in barite at pH 8.0 and pH 4.0. These experiments were employed to evaluate the relationship between aqueous Se(VI) fraction (RwVI) and that incorporated into barite (RbVI). The initial pH of ASW was adjusted to 4.0 and 8.0 before the barite precipitation. These two pH conditions were adopted considering

  17. Redox-dependent functional switching of plant proteins accompanying with their structural changes

    PubMed Central

    Chi, Yong Hun; Paeng, Seol Ki; Kim, Min Ji; Hwang, Gwang Yong; Melencion, Sarah Mae B.; Oh, Hun Taek; Lee, Sang Yeol

    2013-01-01

    Reactive oxygen species (ROS) can be generated during the course of normal aerobic metabolism or when an organism is exposed to a variety of stress conditions. It can cause a widespread damage to intracellular macromolecules and play a causal role in many degenerative diseases. Like other aerobic organisms plants are also equipped with a wide range of antioxidant redox proteins, such as superoxide dismutase, catalase, glutaredoxin, thioredoxin (Trx), Trx reductase, protein disulfide reductase, and other kinds of peroxidases that are usually significant in preventing harmful effects of ROS. To defend plant cells in response to stimuli, a part of redox proteins have shown to play multiple functions through the post-translational modification with a redox-dependent manner. For the alternative switching of their cellular functions, the redox proteins change their protein structures from low molecular weight to high molecular weight (HMW) protein complexes depending on the external stress. The HMW proteins are reported to act as molecular chaperone, which enable the plants to enhance their stress tolerance. In addition, some transcription factors and co-activators have function responding to environmental stresses by redox-dependent structural changes. This review describes the molecular mechanism and physiological significance of the redox proteins, transcription factors and co-activators to protect the plants from environmental stresses through the redox-dependent structural and functional switching of the plant redox proteins. PMID:23898340

  18. Changes in productivity and redox conditions during the Last Glacial Maximum as recorded in high-resolution geochemical records from Alfonso Basin, Gulf of California

    NASA Astrophysics Data System (ADS)

    Choumiline, K.; Lyons, T. W.; Carriquiry, J. D.; Perez-Cruz, L. L.; Beaufort, L.

    2015-12-01

    The Last Glacial Maximum represents the most recent major sea level low stand in Earth history. Such changes in eustatic sea level impacted the oxygenation of marine basins, yet the characteristics and mechanisms of those impacts remain poorly known. Specific basin conditions are needed to develop, record, and preserve those paleoredox changes through time most effectively, including rapid sedimentation rates and silled basin morphologies. The anoxic Alfonso Basin, partially separated from the Gulf of California by a bathymetric sill, is such a place. The basin is located in a dry semiarid region dominated by dust inputs and only occasional tropical cyclone-induced fluvial contributions. We present the first multi-proxy reconstruction of southern Gulf of California paleoredox that covers an uninterrupted timespan from the Late Pleistocene to the present, with an emphasis on the Last Glacial Maximum. In this research we contrast geochemical data from a 47-meter-long sediment core (collected with the giant CALYPSO corer aboard the R/V Marion Dufresne) with the solid phase and pore water chemical data from a shorter but very detailed box core (collected on the R/V El Puma), both from Alfonso Basin. Our results show that during the Late Pleistocene and throughout the Holocene several paleoredox shifts occurred, often accompanied by differences in lamination (laminated/massive alternations) and trace element (Mo, V, U) compositions; detailed Fe chemistry (FeHR/FeTand Fe/Al ratios); as well as carbon and sulfur concentrations and isotope ratios. For example, FeHR/FeT ratios indicate values of roughly 0.15 during the Last Glacial Maximum (lower than theoretic threshold of 0.2 between oxic and anoxic), suggesting more oxic conditions, in comparison to 0.25 and higher in the Holocene. Most of the variability seen in these proxies is related to global sea level change, while some variability is instead related to local variations in paleoproductivity, often connected to

  19. Microbial communities acclimate to recurring changes in soil redox potential status

    SciTech Connect

    DeAngelis, Kristen M.; Silver, Whendee; Thompson, Andrew; Firestone, Mary K.

    2010-12-03

    Rapidly fluctuating environmental conditions can significantly stress organisms, particularly when fluctuations cross thresholds of normal physiological tolerance. Redox potential fluctuations are common in humid tropical soils, and microbial community acclimation or avoidance strategies for survival will in turn shape microbial community diversity and biogeochemistry. To assess the extent to which indigenous bacterial and archaeal communities are adapted to changing in redox potential, soils were incubated under static anoxic, static oxic or fluctuating redox potential conditions, and the standing (DNA-based) and active (RNA-based) communities and biogeochemistry were determined. Fluctuating redox potential conditions permitted simultaneous CO{sub 2} respiration, methanogenesis, N{sub 2}O production and iron reduction. Exposure to static anaerobic conditions significantly changed community composition, while 4-day redox potential fluctuations did not. Using RNA: DNA ratios as a measure of activity, 285 taxa were more active under fluctuating than static conditions, compared with three taxa that were more active under static compared with fluctuating conditions. These data suggest an indigenous microbialcommunity adapted to fluctuating redox potential.

  20. Redox conditions in sediments and during sedimentation in the Ontong Java Plateau, west equatorial Pacific

    NASA Astrophysics Data System (ADS)

    Lu, Bo; Li, Tiegang; Yu, Xinke; Chang, Fengming; Nan, Qingyun

    2011-11-01

    Redox-sensitive elements in sediments, such as manganese (Mn), vanadium (V), molybdenum (Mo), and uranium (U), are promising indicators of past redox conditions during sedimentation and early diagenesis. However, in the Ontong Java Plateau, west equatorial Pacific, there are sparse datasets of redox-sensitive elements in sediment cores. Here, we present a 250 ka record of redox sensitive elements from a 460 cm gravity core at site WP7 (3°56'S, 156°E, water depth 1 800 m), which was recovered from the southwest Ontong Java Plateau during the 1993 cruise of R/V Science I of the Institute of Oceanology, Chinese Academy of Sciences (IOCAS). Relative to the Post-Archean Australian Shale (PAAS), authigenic Mn, cobalt (Co), nickel (Ni), Mo, V, U, and cadmium (Cd) were found at constantly low levels except when peaks occurred at several depth intervals. Manganese, Co, Ni, and Mo concentrations were elevated at 25-35 cm due to Mn redox cycling. The core was divided into three distinct sections, the top 0-25 cm being oxic, a suboxic section at 25-35 cm and from 35-460 cm which was anoxic. Differential authigenic enrichments of Co, Ni, Mo, V, U, and Cd at the same depth intervals were observed indicating that the enrichments happened during sedimentation or diagenesis and suffered no post settlement redox changes. Therefore, no significant changes in redox conditions during sedimentation must have happened. The water at depth on the Ontong Java Plateau during past 250 ka must have been well oxygenated, possibly resulted from the more or less continuous presence of oxygen-rich deep water like the modern Antarctic Intermediate Water (AAIW) and Antarctic Circumpolar Water (ACW); while it's slightly less oxygenated in glacial intervals, possibly due to ventilation weakening and/or the surface productivity increase.

  1. Pyrite framboid diameter distribution in the Lower Oligocene black shales of the Vrancea Nappe as an indicator of changes in redox conditions, Eastern Outer Carpathians, Romania

    NASA Astrophysics Data System (ADS)

    Wendorff, Małgorzata; Marynowski, Leszek; Rospondek, Mariusz

    2016-04-01

    Studies of recent and ancient sediments revealed that the diameter distribution of pyrite framboids may be reliably used to characterise oxygen-restricted environments and distinguish ancient euxinic conditions (water column hydrogen sulphide bearing thus oxygen-free) from anoxic, non-sulfidic or dysoxic (oxygen-poor) conditions. Such diagnoses are of great importance when reconstructing palaeoenvironments in ancient basins and the processes of source rocks formation. During Oligocene to early Miocene time an extensive accumulation of organic matter (OM)-rich sediments occurred in the entire Paratethys including the Carpathian Foredeep, which was closed forming fold-thrust belt of the Outer Carpathians. These OM-rich black shales are represented by so-called Menilite shales, widely considered as hydrocarbon source rocks, which constitute as well a detailed archive for palaeoenvironmental changes. The purpose of this preliminary study is to characterise the depositional environment of the Lower Oligocene black shales basing on the pyrite framboid diameter distribution. Five samples of finely laminated black shales were selected from the Nechit section outcropping in the Bistrica half-window of the Vrancea Nappe in the Eastern Outer Carpathians, E Romania. At least 100 framboid diameters were measured on polished blocks using scanning electron microscope in a back-scattered electron mode. Framboids from four samples starting from the lowermost part of the section exhibit a narrow range of diameters from 1.0 to 11.5 μm; mean value ranges from 3.65 to 4.85 μm. Small-sized framboids (< 6 μm) account for 70% up to 91% of all framboids, while large framboids (>10 μm) are absent or rare (max. 2%). Within the sample from the uppermost part of the section framboids reveal more variable sizes, 2 - 25 μm, with mean value of 6.63 μm. Small framboids are still numerous (54%), however the amount of framboids >10 μm increases to 15%. The domination of small framboids with

  2. Is vanadate reduced by thiols under biological conditions? Changing the redox potential of V(V)/V(IV) by complexation in aqueous solution.

    PubMed

    Crans, Debbie C; Zhang, Boyan; Gaidamauskas, Ernestas; Keramidas, Anastasios D; Willsky, Gail R; Roberts, Chris R

    2010-05-01

    Although dogma states that vanadate is readily reduced by glutathione, cysteine, and other thiols, there are several examples documenting that vanadium(V)-sulfur complexes can form and be observed. This conundrum has impacted life scientists for more than two decades. Investigation of this problem requires an understanding of both the complexes that form from vanadium(IV) and (V) and a representative thiol in aqueous solution. The reactions of vanadate and hydrated vanadyl cation with 2-mercaptoethanol have been investigated using multinuclear NMR, electron paramagnetic resonance (EPR), and UV-vis spectroscopy. Vanadate forms a stable complex of 2:2 stoichiometry with 2-mercaptoethanol at neutral and alkaline pH. In contrast, vanadate can oxidize 2-mercaptoethanol; this process is favored at low pH and high solute concentrations. The complex that forms between aqueous vanadium(IV) and 2-mercaptoethanol has a 1:2 stoichiometry and can be observed at high pH and high 2-mercaptoethanol concentration. The solution structures have been deduced based on coordination induced chemical shifts and speciation diagrams prepared. This work demonstrates that both vanadium(IV) and (V)-thiol complexes form and that redox chemistry also takes place. Whether reduction of vanadate takes place is governed by a combination of parameters: pH, solute- and vanadate-concentrations and the presence of other complexing ligands. On the basis of these results it is now possible to understand the distribution of vanadium in oxidation states (IV) and (V) in the presence of glutathione, cysteine, and other thiols and begin to evaluate the forms of the vanadium compounds that exert a particular biological effect including the insulin-enhancing agents, antiamoebic agents, and interactions with vanadium binding proteins. PMID:20359175

  3. Organic chemical degradation by remote study of the redox conditions

    NASA Astrophysics Data System (ADS)

    Fernandez, P. M.; Revil, A.; Binley, A. M.; Bloem, E.; French, H. K.

    2014-12-01

    Monitoring the natural (and enhanced) degradation of organic contaminants is essential for managing groundwater quality in many parts of the world. Contaminated sites often have limited access, hence non-intrusive methods for studying redox processes, which drive the degradation of organic compounds, are required. One example is the degradation of de-icing chemicals (glycols and organic salts) released to the soil near airport runways during winter. This issue has been broadly studied at Oslo airport, Gardermoen, Norway using intrusive and non-intrusive methods. Here, we report on laboratory experiments that aim to study the potential of using a self-potential, DCresistivity, and time-domain induced polarization for geochemical characterization of the degradation of Propylene Glycol (PG). PG is completely miscible in water, does not adsorb to soil particles and does not contribute to the electrical conductivity of the soil water. When the contaminant is in the unsaturated zone near the water table, the oxygen is quickly consumed and the gas exchange with the surface is insufficient to ensure aerobic degradation, which is faster than anaerobic degradation. Since biodegradation of PG is highly oxygen demanding, anaerobic pockets can exist causing iron and manganese reduction. It is hypothesised that nitrate would boost the degradation rate under such conditions. In our experiment, we study PG degradation in a sand tank. We provide the system with an electron highway to bridge zones with different redox potential. This geo-battery system is characterized by self-potential, resistivity and induced polarization anomalies. An example of preliminary results with self-potential at two different times of the experiment can be seen in the illustration. These will be supplemented with more direct information on the redox chemistry: in-situ water sampling, pH, redox potential and electrical conductivity measurements. In parallel, a series of batch experiments have been

  4. Targeting the Redox Balance in Inflammatory Skin Conditions

    PubMed Central

    Wagener, Frank A. D. T. G.; Carels, Carine E.; Lundvig, Ditte M. S.

    2013-01-01

    Reactive oxygen species (ROS) can be both beneficial and deleterious. Under normal physiological conditions, ROS production is tightly regulated, and ROS participate in both pathogen defense and cellular signaling. However, insufficient ROS detoxification or ROS overproduction generates oxidative stress, resulting in cellular damage. Oxidative stress has been linked to various inflammatory diseases. Inflammation is an essential response in the protection against injurious insults and thus important at the onset of wound healing. However, hampered resolution of inflammation can result in a chronic, exaggerated response with additional tissue damage. In the pathogenesis of several inflammatory skin conditions, e.g., sunburn and psoriasis, inflammatory-mediated tissue damage is central. The prolonged release of excess ROS in the skin can aggravate inflammatory injury and promote chronic inflammation. The cellular redox balance is therefore tightly regulated by several (enzymatic) antioxidants and pro-oxidants; however, in case of chronic inflammation, the antioxidant system may be depleted, and prolonged oxidative stress occurs. Due to the central role of ROS in inflammatory pathologies, restoring the redox balance forms an innovative therapeutic target in the development of new strategies for treating inflammatory skin conditions. Nevertheless, the clinical use of antioxidant-related therapies is still in its infancy. PMID:23624605

  5. The relationship between magnetic mineralogy and redox conditions in Baldeggersee

    NASA Astrophysics Data System (ADS)

    Hirt, Ann; Gilli, Adrian

    2014-05-01

    Many factors contribute and later influence the iron mineralogy in lake sediments, such as catchment geology, climate, and redox conditions in the water and sediment column. Reidar Lovlie was one of the earliest paleomagnetists to examine these factors. Local redox conditions especially play an important role when magnetotactic bacteria are the main source of ferromagnetic grains in the lacustrine sediments. Baldeggersee, a mid-sized lake, which formed in the Molasse Basin of Switzerland during the last glacial retreat, has been shown to undergo extreme anoxia in the past century due to eutrophication. A reliable indicator for anoxic conditions is the preservation of seasonal varves. Previous studies using core transects confirmed that the anoxia intensified during the first half of the 20th century affecting shallower lake areas until oxygen was pumped into the lake as part of a lake restoration program that started in 1982. Two short sediment cores were taken at two different water depths in fall, 2010 to investigate how magnetic mineralogy is affected by the anoxic conditions, which have a different timing at the two coring sites. Both the magnetic properties of sediments and their remanent magnetization were determined. Core BA10-04 was taken from the deepest part of the lake, with a water depth of 61 m. The 85 cm core records the anoxia from its onset around 1910 until the restoration measures in 1982. The second core, BA10-01 is 58 cm long and was taken from intermediate water depth of 35m. At this depth it is postulated that anoxic conditions did not affect the shallower water depth until ca. 1935. A total of 75 samples were taken from BA10-04 and 50 samples from BA10-01. Rock magnetic experiments show that magnetite is the only ferromagnetic phase in both cores. Before 1900 analysis of first-order reversal curves indicate that magnetite is biogenic in origin. After 1900 there is a rapid decrease in the concentration of magnetite, and it occurs as clusters

  6. Lignin decomposition and microbial community in paddy soils: effects of alternating redox conditions

    NASA Astrophysics Data System (ADS)

    Cerli, Chiara; Liu, Qin; Hanke, Alexander; Kaiser, Klaus; Kalbitz, Karsten

    2013-04-01

    Paddy soils are characterised by interchanging cycles of anaerobic and aerobic conditions. Such fluctuations cause continuous changes in soil solution chemistry as well as in the composition and physiological responses of the microbial community. Temporary deficiency in oxygen creates conditions favourable to facultative or obligates anaerobic bacteria, while aerobic communities can thrive in the period of water absence. These alterations can strongly affect soil processes, in particular organic matter (OM) accumulation and mineralization. In submerged soils, lignin generally constitutes a major portion of the total OM because of hampered degradation under anoxic conditions. The alternating redox cycles resulting from paddy soil management might promote both degradation and preservation of lignin, affecting the overall composition and reactivity of total and dissolved OM. We sampled soils subjected to cycles of anoxic (rice growing period) and oxic (harvest and growth of other crops) conditions since 700 and 2000 years. We incubated suspended Ap material, sampled from the two paddy plus two corresponding non-paddy control soils under oxic and anoxic condition, for 3 months, interrupted by a short period of three weeks (from day 21 to day 43) with reversed redox conditions. At each sampling time (day 2, 21, 42, 63, 84), we determined lignin-derived phenols (by CuO oxidation) as well as phospholipids fatty acids contents and composition. We aimed to highlight changes in lignin decomposition as related to the potential rapid changes in microbial community composition. Since the studied paddy soils had a long history of wet rice cultivation, the microbial community should be well adapted to interchanging oxic and anoxic cycles, therefore fully expressing its activity at both conditions. In non-paddy soil changes in redox conditions caused modification of quantity and composition of the microbial community. On the contrary, in well-established paddy soils the microbial

  7. Adaptive changes in renal mitochondrial redox status in diabetic nephropathy

    SciTech Connect

    Putt, David A.; Zhong, Qing; Lash, Lawrence H.

    2012-01-15

    Nephropathy is a serious and common complication of diabetes. In the streptozotocin (STZ)-treated rat model of diabetes, nephropathy does not typically develop until 30 to 45 days post-injection, although hyperglycemia occurs within 24 h. We tested the hypothesis that chronic hyperglycemia results in a modest degree of oxidative stress that is accompanied by compensatory changes in certain antioxidants and mitochondrial redox status. We propose that as kidneys progress to a state of diabetic nephropathy, further adaptations occur in mitochondrial redox status. Basic parameters of renal function in vivo and several parameters of mitochondrial function and glutathione (GSH) and redox status in isolated renal cortical mitochondria from STZ-treated and age-matched control rats were examined at 30 days and 90 days post-injection. While there was no effect of diabetes on blood urea nitrogen, measurement of other, more sensitive parameters, such as urinary albumin and protein, and histopathology showed significant and progressive worsening in diabetic rats. Thus, renal function is compromised even prior to the onset of frank nephropathy. Changes in mitochondrial respiration and enzyme activities indicated existence of a hypermetabolic state. Higher mitochondrial GSH content and rates of GSH transport into mitochondria in kidneys from diabetic rats were only partially due to changes in expression of mitochondrial GSH carriers and were mostly due to higher substrate supply. Although there are few clear indicators of oxidative stress, there are several redox changes that occur early and change further as nephropathy progresses, highlighting the complexity of the disease. Highlights: ►Adaptive changes in renal mitochondrial and redox status in diabetic rats. ►Modest renal dysfunction even prior to onset of nephropathy. ►Elevated concentrations of mitochondrial GSH in diabetic kidneys. ►Change in GSH due partly to increased protein expression of transporter.

  8. Mineralogical record of the redox conditions on early Mars

    NASA Astrophysics Data System (ADS)

    Dehouck, Erwin; Gaudin, Anne; Chevrier, Vincent; Mangold, Nicolas

    2016-06-01

    Sulfates and Fe-oxides identified on the martian surface by orbital and in situ missions indicate that oxidizing conditions have existed on early Mars, at least locally and/or episodically. In the context of rock alteration and weathering, redox conditions are especially critical for the behavior of iron, which is soluble in its divalent state but insoluble in its trivalent state. Here, we combine results from a series of laboratory experiments conducted under Mars-like conditions to address the influence of highly-oxidizing compounds such as hydrogen peroxide (H2O2) on the alteration pathways of primary materials. We show that, if early Mars had a dense CO2 atmosphere allowing for relatively "warm and wet" conditions and surface weathering, highly-oxidizing conditions would have strongly inhibited the formation of Fe/Mg-smectite clays from alteration of igneous ferromagnesian minerals, and possibly enhanced the formation of carbonates. But a decade of mineral mapping of the martian surface show abundant, widespread Fe/Mg-clays and rare carbonates, which we interpret here as a mineralogical record of poorly-oxidizing (or even reducing) conditions during most of the Noachian era. Oxidizing conditions would have occurred later in martian history as a consequence of a higher rate of H2 escape or of a lower rate of volcanic outgassing, or both.

  9. Bacterial Adaptation of Respiration from Oxic to Microoxic and Anoxic Conditions: Redox Control

    PubMed Central

    Bueno, Emilio; Mesa, Socorro; Bedmar, Eulogio J.; Richardson, David J.

    2012-01-01

    Abstract Under a shortage of oxygen, bacterial growth can be faced mainly by two ATP-generating mechanisms: (i) by synthesis of specific high-affinity terminal oxidases that allow bacteria to use traces of oxygen or (ii) by utilizing other substrates as final electron acceptors such as nitrate, which can be reduced to dinitrogen gas through denitrification or to ammonium. This bacterial respiratory shift from oxic to microoxic and anoxic conditions requires a regulatory strategy which ensures that cells can sense and respond to changes in oxygen tension and to the availability of other electron acceptors. Bacteria can sense oxygen by direct interaction of this molecule with a membrane protein receptor (e.g., FixL) or by interaction with a cytoplasmic transcriptional factor (e.g., Fnr). A third type of oxygen perception is based on sensing changes in redox state of molecules within the cell. Redox-responsive regulatory systems (e.g., ArcBA, RegBA/PrrBA, RoxSR, RegSR, ActSR, ResDE, and Rex) integrate the response to multiple signals (e.g., ubiquinone, menaquinone, redox active cysteine, electron transport to terminal oxidases, and NAD/NADH) and activate or repress target genes to coordinate the adaptation of bacterial respiration from oxic to anoxic conditions. Here, we provide a compilation of the current knowledge about proteins and regulatory networks involved in the redox control of the respiratory adaptation of different bacterial species to microxic and anoxic environments. Antioxid. Redox Signal. 16, 819–852. PMID:22098259

  10. Biodegradation of NSO-compounds under different redox-conditions

    NASA Astrophysics Data System (ADS)

    Dyreborg, S.; Arvin, E.; Broholm, K.

    1997-03-01

    Laboratory experiments were carried out to investigate the potential of groundwater microorganisms to degrade selected heterocyclic aromatic compounds containing nitrogen, sulphur, or oxygen (NSO-compounds) under four redox-conditions over a period of 846 days. Eight compounds (pyrrole, 1-methylpyrrole, quinoline, indole, carbazole, dibenzothiophene, benzofuran, and dibenzofuran) were degraded under aerobic conditions, whereas thiophene and benzothiophene were degraded only when other compounds were degraded concomitantly. Quinoline and indole were the only two NSO-compounds degraded under anaerobic conditions, even though the microorganisms present in the anaerobic microcosms were active throughout the incubation period. A high variability in the lag period among the NSO-compounds was observed under aerobic conditions. While quinoline, indole, and carbazole were degraded with a lag period of 3-25 days, the lag periods for pyrrole, dibenzothiophene, benzofuran, and dibenzofuran were significantly longer (29-278 days). Under anaerobic conditions, lag periods of 100-300 days were observed. Differences in the degradation rate among the compounds were also observed. Indole, quinoline, carbazole, and benzofuran were quickly degraded in the aerobic microcosms, whereas a slow degradation of dibenzothiophene and dibenzofuran was observed. Pyrrole and 1-methylpyrrole were slowly degraded and 1-methylpyrrole was not completely removed within the 846 days. The anaerobic degradation rate was significantly slower than the aerobic degradation rate. The degradation rate under sulphate-reducing conditions was higher than under denitrifying and methanogenic conditions, though after re-addition of a compound a quick removal was observed. The persistence of many NSO-compounds under anaerobic conditions together with the long lag periods and the low degradation rates under aerobic conditions suggest that NSO-compounds might persist in groundwater at creosote-contaminated sites.

  11. Mantle Redox Conditions in the North Atlantic Igneous Province

    NASA Astrophysics Data System (ADS)

    Heister, L. E.; Gras, M. A.; Lesher, C. E.

    2004-12-01

    The North Atlantic igneous province (NAIP) has long been viewed as a region of anomalous mantle upwelling related to plume activity, continental rifting, and a heterogeneous mantle source. Prior to continental rifting in the Tertiary, the northern portion of the region was the site of closure of the Iapetus ocean basin. This tectonic event may have contributed to heterogeneities within the upper mantle and altered its oxidation state relative to the ambient mantle. Vanadium has been shown to be a useful indicator of redox conditions due to its multiple valence states (e.g. [1-2]). In mantle minerals, vanadium becomes increasingly incompatible under more oxidizing conditions [3]. Because both scandium and vanadium are moderately incompatible during melting, the Sc/V ratio of primitive basalts can be used to investigate the oxidation state of the mantle [1-3]. We have examined the Sc/V ratios of primitive lavas from the mid-Atlantic ridge (MAR), Iceland, and the East Greenland margin to determine if there are spatial or temporal variations in the oxidation state of the NAIP mantle. The Sc/V ratios for MAR basalts are 0.13-0.20 (GEOROC chemical database); while Icelandic basalts range from 0.10-0.25 with an average of 0.16 (1 σ =0.05). The entire range of Sc/V ratios of the Paleogene East Greenland basalts is 0.07-0.17 with an average of 0.10 (1 σ = 0.05). The Sc/V ratios of Icelandic basalts are similar to MAR basalts, but the East Greenland lavas are distinctly lower than both the MAR and Iceland. The Sc/V ratio also can vary as a function of mean pressure of melting (i.e. spinel versus garnet lherzolite). To test the relative importance of melting systematics, source composition, and oxygen fugacity on the Sc/V systematics for NAIP basalts, we incorporated the oxygen-fugacity-dependent V mineral-melt partitioning data of [3] into the polybaric decompression melting model REEBOX [4]. The best-fit model parameters for the majority of the Iceland and MAR basalts

  12. Examining the effect of altered redox conditions on deep soil organic matter stability

    NASA Astrophysics Data System (ADS)

    Gabriel, C.; Kellman, L. M.; Ziegler, S. E.

    2013-12-01

    Since subsoil horizons contribute significantly to terrestrial carbon (C) budgets, understanding the influence of disturbances such as forest harvesting on subsoil C stability is critical. Clearcut harvesting leads to changes in the soil physico-chemical environment, including altering redox conditions arising from changes in soil hydrology that increase soil saturation, soil temperature, and pH. These physico-chemical changes have the potential to alter the adsorption of soil organic matter (SOM) to minerals, particularly at depth where SOM is primarily associated with mineral phases. The objective of this study was to determine the effect of differing redox states (aerobic vs. anaerobic) and temperature upon SOM stability of forested soils representative of the Acadian Forest Region of Eastern North America. Composite soil samples through depth (0-10, 10-20, 20-35, and 35-50 cm) from a mature red spruce forest (110 years) were incubated under optimum (aerobic) or saturated (anaerobic) conditions for 1 or 4 months at two temperatures (5 and 15 C). Following incubation, soil leachate was analyzed for dissolved organic carbon (DOC), and UV-vis absorbance in order to determine soil C losses and its optical character. Specific UV-vis absorbance SUVA (254 nm) and spectral slope ratios were calculated in order to assess the composition of chromophoric dissolved organic matter (CDOM). Preliminary results from the 1 month incubation indicate that under anaerobic conditions, all depths released DOC with a higher SUVA than under aerobic conditions, with the largest change observed in the 0-10 cm depth increment. Soil incubated at 5 C produced leachate with significantly less DOC and with a lower absorbance compared to 15 C under both redox conditions. These results suggest that both temperature and redox state are important in determining the aromaticity of DOC released from soils. Spectral slope ratios revealed that a greater proportion of CDOM of lower molecular weight

  13. Effects of redox conditions on the adsorption of dissolved organic matter to soil minerals and differently aged paddy soils

    NASA Astrophysics Data System (ADS)

    Sauerwein, Meike; Hanke, Alexander; Kaiser, Klaus; Kalbitz, Karsten

    2010-05-01

    Effects of redox conditions on the adsorption of dissolved organic matter to soil minerals and differently aged paddy soils Meike Sauerwein1, Alexander Hanke2, Klaus Kaiser3, Karsten Kalbitz2 1) Dept. of Soil Ecology, Bayreuth Centre of Ecology and Environmental Research (BayCEER), University of Bayreuth, 95440 Bayreuth, Germany, meike.sauerwein@gmail.com 2) Institute of ecosystem dynamics and biodiversity, University of Amsterdam, 1018 WV, Netherlands, a.hanke@uva.nl, k.kalbitz@uva.nl 3) Soil Sciences, Martin Luther University Halle, 06099 Halle, Germany, klaus.kaiser@landw.uni-halle.de Current knowledge on dissolved organic matter (DOM) in soils is based mainly on observations and experiments in aerobic environments. Adsorption to soil minerals is an important mechanism of DOM retention and stabilization against microbial decay under oxic conditions. Under anoxic conditions where hydrous iron oxides, the potential main adsorbents of DOM, possibly dissolve, the importance of adsorption seems questionable. Therefore, we studied the adsorption of DOM to selected soil minerals and to mineral soils under oxic and anoxic conditions. In detail, we tested the following hypotheses: 1. Minerals and soils adsorb less DOM under anoxic conditions than under oxic ones. 2. The reduced adsorption under anoxic conditions is result of the smaller adsorption to hydrous Fe oxides whereas adsorption to clay minerals and Al hydroxides is not sensitive to changes in redox conditions 3. DOM adsorption will increase with the number of redox cycles, thus time of soil formation, due to increasing contents of poorly crystalline Fe oxides. This will, however, cause a stronger sensitivity to redox changes as poor crystalline Fe oxides are more reactive. 4. Aromatic compounds, being preferentially adsorbed under oxic conditions, will be less strongly adsorbed under anoxic conditions. We chose paddy soils as models because their periodically and regular exposure to changing redox cycles, with

  14. The influence of variable hydraulic conditions on hyporheic water flux and redox regime in streambed sediments

    NASA Astrophysics Data System (ADS)

    Schmidt, C.; Trauth, N.; Vieweg, M.; Fleckenstein, J. H.

    2011-12-01

    Magnitudes and directions of water flux in the streambed are controlled by hydraulic gradients between the aquifer and the stream and by bedforms which induce hyporheic exchange flows. Varying hydrologic conditions such as short term flood events or seasonal variations in groundwater flow typically change the flow regime in the streambed. Consequently, the supply of oxygen into the streambed varies depending on the magnitude of upwelling or downwelling water fluxes. Field data and numerical experiments illustrate the relevance of variable hydraulic conditions for the water flux and redox conditions in the streambed for both morphologically rich natural streams and poorly structured, constructed streambeds. In a field study at a small stream with poor morphologic structure, we observed the variability of hydraulic gradients and redox conditions over the course of five months. During the observation period the hydrologic conditions changed from losing to gaining. Redox conditions were highly variable and appeared to depend on the direction of water flux in the shallow streambed at 0.1m depth. In a stream structured with pool-riffle-sequences bedform induced hyporheic exchange dominates water fluxes in the streambed. However, magnitude and direction of water flow depend on the hydraulic conditions. We used variations of electrical conductivity (EC) as a natural tracer. The travel times in the riffle were estimated by non-linearly matching the EC signals in the time domain. The amount of temporal distortion required to obtain the optimal matching is related to the travel time of the signal. This analysis revealed that the travel-times within the studied riffle varied with varying stream flow. In order to generalize this finding we conducted numerical experiments. With a two-phase (air and water) computational fluid dynamics representation of surface water flow it was possible to simulate variable stream flows and the resulting variability of pressure distributions on

  15. The impact of oscillating redox conditions: arsenic immobilisation in contaminated calcareous floodplain soils.

    PubMed

    Parsons, Christopher T; Couture, Raoul-Marie; Omoregie, Enoma O; Bardelli, Fabrizio; Greneche, Jean-Marc; Roman-Ross, Gabriela; Charlet, Laurent

    2013-07-01

    Arsenic contamination of floodplain soils is extensive and additional fresh arsenic inputs to the pedosphere from human activities are ongoing. We investigate the cumulative effects of repetitive soil redox cycles, which occur naturally during flooding and draining, on a calcareous fluvisol, the native microbial community and arsenic mobility following a simulated contamination event. We show through bioreactor experiments, spectroscopic techniques and modelling that repetitive redox cycling can decrease arsenic mobility during reducing conditions by up to 45%. Phylogenetic and functional analyses of the microbial community indicate that iron cycling is a key driver of observed changes to solution chemistry. We discuss probable mechanisms responsible for the arsenic immobilisation observed in-situ. The proposed mechanisms include, decreased heterotrophic iron reduction due to the depletion of labile particulate organic matter (POM), increases to the proportion of co-precipitated vs. aqueous or sorbed arsenic with α-FeOOH/Fe(OH)3 and potential precipitation of amorphous ferric arsenate. PMID:23587855

  16. Early diagenesis of carbohydrates and lignin in mangrove sediments subject to variable redox conditions (French Guiana)

    NASA Astrophysics Data System (ADS)

    Marchand, C.; Disnar, J. R.; Lallier-Vergès, E.; Lottier, N.

    2005-01-01

    A comparative study of lignin and neutral carbohydrate compositions, combined with C, N and δ 13C analyses, was carried out on sedimentary cores, and on various vascular plant species collected in mangrove swamps of French Guiana. The main purpose of this study was to assess the diagenesis of carbohydrates and lignin in brackish to hypersaline fine-grained mangrove sediments characterized by great changes in redox conditions. Distribution of carbohydrates in sediments reflects both the lability of these compounds and their efficient recycling. They are subject to selective degradation, cellulosic glucose and xylose appearing to be the two most labile neutral sugars. In contrast a relative increase in arabinose, rhamnose, fucose and hemicellulosic glucose between plants and sediments, suggests that they may be more refractory and/or that they also derive from microbial synthesis. The total carbon from lignin-derived phenols is higher in sediments than in mangrove plants as a consequence of their rather refractory character. Nevertheless, evidence of lignin decomposition was found to be independent of local environmental conditions. The various redox processes that occur in mangrove sediments depend on plant species, stages in forest development and season. Different redox conditions induce different mechanisms for the decomposition of lignin and thus induce changes in phenol distributions. At depth, in most mangroves, an increase in (Ad/Al) v ratios and in deoxy sugars (fucose and rhamnose) content was significantly correlated with increased proportions of oxidized allochthonous organic debris deriving from the Amazonian detrital discharge, thus suggesting a specific source effect rather than a diagenesis induced change. Therefore, this study illustrates that both lignin and cellulose, derived from vascular plant debris, can be degraded in waterlogged mangrove sediments, and that their distribution depends on environmental conditions.

  17. Nitroxides as redox probes of melanins: dark-induced and photoinduced changes in redox equilibria

    SciTech Connect

    Sarna, T.; Korytowski, W.; Sealy, R.C.

    1985-05-15

    The interaction of nitroxide free radicals and their reduced products (hydroxylamines) with synthetic and natural melanins has been studied. Electron spin resonance spectroscopy was used to measure changes in radical concentration in the dark and during irradiation with visible or uv light. Some reduction of nitroxide occurs in the dark, and is reversible: the nitroxide can be completely regenerated by the one-electron oxidant ferricyanide. The kinetics of the process depend strongly on radical charge and pH. For positively charged nitroxides the rate is much faster than for either neutral or anionic radicals. At pH 10 the rate is about 20 times faster than at pH 5. Oxidation of hydroxylamine also can occur so that a redox equilibrium is established. The equilibrium constant has been estimated for the reaction between a nitroxide and melanin from autoxidation of 3,4-dihydroxyphenylalanine. Results are also dependent upon the type of melanin used and chemical modification (oxidation or reduction) of the melanin. Redox equilibria are altered during irradiation with either visible or uv light. Rapid oxidation of hydroxylamine to nitroxide is apparent, together with a slower reduction of nitroxide. Action spectra for these processes are related to those for melanin radical production and oxygen consumption in nitroxide-free melanin systems. Reduction of nitroxide is inhibited by oxygen, suggesting a competition between nitroxide and oxygen for photoinduced reducing equivalents.

  18. Modeling basic features of biogeochemical structure of water column, bottom boundary layer and benthic boundary layer in changeable redox conditions

    NASA Astrophysics Data System (ADS)

    Yakushev, Evgeniy

    2013-04-01

    Climate Change affects oxygen depletion and leads to spreading of the bottom areas with hypoxic and anoxic conditions in the coastal areas of the seas and inland waters. This work aimed in estimation of a role of changes of redox conditions in the biogeochemical structure there. We use a 1-dimensional C-N-P-Si-O-S-Mn-Fe vertical transport-reaction model describing the water column, bottom boundary layer and benthic boundary layer with biogeochemical block simulating redox conditions changeability. A biogeochemical block is based on ROLM (RedOx Layer Model), that was constructed to simulate basic features of the water column biogeochemical structure changes in oxic, anoxic and changeable conditions (Yakushev et al., 2007). Organic matter formation and decay, reduction and oxidation of species of nitrogen, sulfur, manganese, iron, and the transformation of phosphorus species are parameterized in the model. ROLM includes a simplified ecological model with phytoplankton, zooplankton, aerobic autotrophic and heterotrophic bacteria, anaerobic autotrophic and heterotrophic bacteria. We simulate changes in the parameters distributions and fluxes connected with the vertical displacement of redox interface from the sediments to the water.

  19. Impact of redox conditions on arsenic mobilization from tailings in a wetland with neutral drainage.

    PubMed

    Beauchemin, Suzanne; Kwong, Y T John

    2006-10-15

    More than 80 years of silver mining in the Cobalt area (Ontario, Canada) has led to widespread contamination of water with arsenic. The objective of this study was to determine the impact of changes in redox conditions on the stability of As in samples collected from a tailings wetland in the historic mining camp. Dissolved metal concentrations were monitored while tailings samples (approximately 1300 mg of As kg(-1), pH 7.4) were subjected to 30 days of reduction. Reoxidation of the samples was accomplished by air drying. The As oxidation states in the original, reduced, and reoxidized samples were determined using X-ray absorption spectroscopy (XAS). Arsenic speciation was affected by changes in redox conditions, resulting in rapid mobilization of As during reduction. Glucose input had a significant impact on the dissolution and speciation of As, suggesting that the As transformation was microbially mediated. When carbon was not limiting, the combination of reducing conditions and lower pH favored the formation of As(-I) species. PMID:17120556

  20. Neptunium redox behavior and solubility in J-13 conditions

    SciTech Connect

    Efurd, D.W.; Runde, W.; Tait, C.D.

    1997-08-01

    In order to confirm that the redox reaction Np(V) to Np(IV) may occur, studies are being conducted including exposure of Np(V) to solutions of known E{sub h} vs pH, temperature. Analytic results from ongoing solubility experiments from undersaturation, using Np solids formed in previous oversaturation experiments, are reported.

  1. Changes in microbial communities along redox gradients in polygonized Arctic wet tundra soils

    SciTech Connect

    Lipson, David A.; Raab, Theodore K.; Parker, Melanie; Kelley, Scott T.; Brislawn, Colin J.; Jansson, Janet K.

    2015-08-01

    Summary This study investigated how microbial community structure and diversity varied with depth and topography in ice wedge polygons of wet tundra of the Arctic Coastal Plain in northern Alaska and what soil variables explain these patterns. We observed strong changes in community structure and diversity with depth, and more subtle changes between areas of high and low topography, with the largest differences apparent near the soil surface. These patterns are most strongly correlated with redox gradients (measured using the ratio of reduced Fe to total Fe in acid extracts as a proxy): conditions grew more reducing with depth and were most oxidized in shallow regions of polygon rims. Organic matter and pH also changed with depth and topography but were less effective predictors of the microbial community structure and relative abundance of specific taxa. Of all other measured variables, lactic acid concentration was the best, in combination with redox, for describing the microbial community. We conclude that redox conditions are the dominant force in shaping microbial communities in this landscape. Oxygen and other electron acceptors allowed for the greatest diversity of microbes: at depth the community was reduced to a simpler core of anaerobes,

  2. Changes in microbial communities along redox gradients in polygonized Arctic wet tundra soils

    SciTech Connect

    Lipson, David A.; Raab, Theodore K.; Parker, Melanie; Kelley, Scott T.; Brislawn, Colin J.; Jansson, Janet K.

    2015-07-21

    This study investigated how microbial community structure and diversity varied with depth and topography in ice wedge polygons of wet tundra of the Arctic Coastal Plain in northern Alaska, and what soil variables explain these patterns. We observed strong changes in community structure and diversity with depth, and more subtle changes between areas of high and low topography, with the largest differences apparent near the soil surface. These patterns are most strongly correlated with redox gradients (measured using the ratio of reduced Fe to total Fe in acid extracts as a proxy): conditions grew more reducing with depth and were most oxidized in shallow regions of polygon rims. Organic matter and pH also changed with depth and topography, but were less effective predictors of the microbial community structure and relative abundance of specific taxa. Of all other measured variables, lactic acid concentration was the best, in combination with redox, for describing the microbial community. We conclude that redox conditions are the dominant force in shaping microbial communities in this landscape. Oxygen and other electron acceptors allowed for the greatest diversity of microbes: at depth the community was reduced to a simpler core of anaerobes, dominated by fermenters (Bacteroidetes and Firmicutes).

  3. Changes in microbial communities along redox gradients in polygonized Arctic wet tundra soils.

    PubMed

    Lipson, David A; Raab, Theodore K; Parker, Melanie; Kelley, Scott T; Brislawn, Colin J; Jansson, Janet

    2015-08-01

    This study investigated how microbial community structure and diversity varied with depth and topography in ice wedge polygons of wet tundra of the Arctic Coastal Plain in northern Alaska and what soil variables explain these patterns. We observed strong changes in community structure and diversity with depth, and more subtle changes between areas of high and low topography, with the largest differences apparent near the soil surface. These patterns are most strongly correlated with redox gradients (measured using the ratio of reduced Fe to total Fe in acid extracts as a proxy): conditions grew more reducing with depth and were most oxidized in shallow regions of polygon rims. Organic matter and pH also changed with depth and topography but were less effective predictors of the microbial community structure and relative abundance of specific taxa. Of all other measured variables, lactic acid concentration was the best, in combination with redox, for describing the microbial community. We conclude that redox conditions are the dominant force in shaping microbial communities in this landscape. Oxygen and other electron acceptors allowed for the greatest diversity of microbes: at depth the community was reduced to a simpler core of anaerobes, dominated by fermenters (Bacteroidetes and Firmicutes). PMID:26034016

  4. Combination of aquifer thermal energy storage and enhanced bioremediation: resilience of reductive dechlorination to redox changes.

    PubMed

    Ni, Zhuobiao; van Gaans, Pauline; Smit, Martijn; Rijnaarts, Huub; Grotenhuis, Tim

    2016-04-01

    To meet the demand for sustainable energy, aquifer thermal energy storage (ATES) is widely used in the subsurface in urban areas. However, contamination of groundwater, especially with chlorinated volatile organic compounds (CVOCs), is often being encountered. This is commonly seen as an impediment to ATES implementation, although more recently, combining ATES and enhanced bioremediation of CVOCs has been proposed. Issues to be addressed are the high water flow velocities and potential periodic redox fluctuation that accompany ATES. A column study was performed, at a high water flow velocity of 2 m/h, simulating possible changes in subsurface redox conditions due to ATES operation by serial additions of lactate and nitrate. The impacts of redox changes on reductive dechlorination as well as the microbial response of Dehalococcoides (DHC) were evaluated. The results showed that, upon lactate addition, reductive dechlorination proceeded well and complete dechlorination from cis-DCE to ethene was achieved. Upon subsequent nitrate addition, reductive dechlorination immediately ceased. Disruption of microorganisms' retention was also immediate and possibly detached DHC which preferred attaching to the soil matrix under biostimulation conditions. Initially, recovery of dechlorination was possible but required bioaugmentation and nutrient amendment in addition to lactate dosing. Repeated interruption of dechlorination and DHC activity by nitrate dosing appeared to be less easily reversible requiring more efforts for regenerating dechlorination. Overall, our results indicate that the microbial resilience of DHC in biosimulated ATES conditions is sensitive to redox fluctuations. Hence, combining ATES with bioremediation requires dedicated operation and monitoring on the aquifer geochemical conditions. PMID:26711280

  5. Redox conditions and the efficiency of chlorinated ethene biodegradation: Field studies

    USGS Publications Warehouse

    Chapelle, F.H.; Bradley, P.M.

    2000-01-01

    The effect of redox conditions on the efficiency of chlorinated ethene biodegradation was investigated at two field sites. One site (NAS Cecil Field, FL) is characterized by predominantly Fe(III)-reducing conditions in the contaminant source area, grading to predominantly sulfate- reducing conditions downgradient. This sequence of redox conditions led to relatively inefficient biodegradation of chlorinated ethenes, with high concentrations of trichloroethene extending more than 400 meters downgradient of the source area. In contrast, a second site (NBS Kings Bay, GA) characterized by predominantly sulfate-reducing conditions in the source area followed by Fe(III)-reducing conditions downgradient. In this system perchloroethene (PCE) and TCE were rapidly biodegraded and extended less than 100 meters downgradient. Rates of ground- water transport are similar at the two sites (???0.2 m/d) indicating that the succession of redox processes, rather than other hydrologic factors, is the principal control on biodegradation. In particular, redox conditions that favor the initial reduction of highly chlorinated ethenes (methanogenic or sulfate-reducing conditions) followed by more oxidizing conditions (Fe(III)- reducing or oxic conditions) favors efficient biodegradation. Thus, documenting the succession of redox processes is an important step in understanding the efficiency of chlorinated ethene biodegradation in ground-water systems.

  6. Crude oil degradation by bacterial consortia under four different redox and temperature conditions.

    PubMed

    Xiong, Shunzi; Li, Xia; Chen, Jianfa; Zhao, Liping; Zhang, Hui; Zhang, Xiaojun

    2015-02-01

    There is emerging interest in the anaerobic degradation of crude oil. However, there is limited knowledge about the geochemical effects and microbiological activities for it. A mixture of anaerobic sludge and the production water from an oil well was used as an inoculum to construct four consortia, which were incubated under sulfate-reducing or methanogenic conditions at either mesophilic or thermophilic temperatures. Significant degradation of saturated and aromatic hydrocarbons and the changing quantities of some marker compounds, such as pristane, phytane, hopane and norhopane, and their relative quantities, suggested the activity of microorganisms in the consortia. Notably, the redox conditions and temperature strongly affected the diversity and structure of the enriched microbial communities and the oil degradation. Although some specific biomarker showed larger change under methanogenic condition, the degradation efficiencies for total aromatic and saturated hydrocarbon were higher under sulfate-reducing condition. After the 540-day incubation, bacteria of unknown classifications were dominant in the thermophilic methanogenic consortia, whereas Clostridium dominated the mesophilic methanogenic consortia. With the exception of the dominant phylotypes that were shared with the methanogenic consortia, the sulfate-reducing consortia were predominantly composed of Thermotogae, Deltaproteobacteria, Spirochaeta, and Synergistetes phyla. In conclusion, results in this study demonstrated that the different groups of degraders were responsible for degradation in the four constructed crude oil degrading consortia and consequently led to the existence of different amount of marker compounds under these distinct conditions. There might be distinct metabolic mechanism for degrading crude oil under sulfate-reducing and methanogenic conditions. PMID:25216580

  7. Effects of experimental reheating of natural basaltic ash at different temperatures and redox conditions

    NASA Astrophysics Data System (ADS)

    D'Oriano, C.; Pompilio, M.; Bertagnini, A.; Cioni, R.; Pichavant, M.

    2013-05-01

    A set of experiments have been performed on volcanic materials from Etna, Stromboli and Vesuvius in order to evaluate how the exposure to thermal and redox conditions close to that of active craters affects the texture and composition of juvenile pyroclasts. Selected samples were placed within a quartz tube, in presence of air or under vacuum, and kept at T between 700 and 1,130 °C, for variable time (40 min to 12 h). Results show that reheating reactivates the melt, which, through processes of chemical and thermal diffusion, reaches new equilibrium conditions. In all the experiments performed at T = 700-750 °C, a large number of crystal nuclei and spherulites grows in the groundmass, suggesting conditions of high undercooling. This process creates textural heterogeneities at the scale of few microns but only limited changes of groundmass composition, which remains clustered around that of the natural glasses. Reheating at T = 1,000-1,050 °C promotes massive groundmass crystallization, with a different mineral assemblage as a function of the redox conditions. Morphological modifications of clasts, from softening to sintering as temperature increases, occur under these conditions, accompanied by progressive smoothing of external surfaces, and a reduction in size and abundance of vesicles, until the complete obliteration of the pre-existing vesicularity. The transition from sintering to welding, characteristic of high temperature, is influenced by redox conditions. Experiments at T = 1,100-1,130 °C and under vacuum produce groundmass textures and glass compositions similar to that of the respective starting material. Collapse and welding of the clasts cause significant densification of the whole charge. At the same temperature, but in presence of air, experimental products at least result sintered and show holocrystalline groundmass. In all experiments, sublimates grow on the external surfaces of the clasts or form a lining on the bubble walls. Their shape and

  8. EVALUATION OF IMMOBILIZED REDOX INDICATORS AS REVERSIBLE, IN SITU REDOX SENSORS FOR DETERMINING FE(III)-REDUCING CONDITIONS IN ENVIRONMENTAL SAMPLES. (R828772)

    EPA Science Inventory

    An in situ methodology based on immobilized redox indicators has been developed to determine when Fe(III)-reducing conditions exist in environmental systems. The redox indicators thionine (Thi, formal potential at pH 7 (E70') equals 66 mV), tol...

  9. Quantitative analysis of solid oxide fuel cell anode microstructure change during redox cycles

    NASA Astrophysics Data System (ADS)

    Shimura, Takaaki; Jiao, Zhenjun; Hara, Shotaro; Shikazono, Naoki

    2014-12-01

    In the present study, correlation between solid oxide fuel cell anode microstructure and electrochemical performance during redox cycles was investigated. Electrolyte-support cell with nickel/yttria stabilized zirconia composite anode was prepared and tested under discharge process with redox cycles. Redox treatment was basically conducted every 20 h during discharge process. Polarization resistance decreased just after redox treatment and increased during discharge process. Enhancement of cell performance after every redox cycles and faster degradation in the following discharge process were observed. Polarization resistance gradually increased as redox cycles were repeated. Focused ion beam-scanning electron microscopy (FIB-SEM) observation was conducted for reconstructing the three dimensional microstructures of the tested samples. From the three dimensional microstructure reconstruction, it is found that the shape of nickel particle got thinner and complicated after redox cycles. Triple phase boundary (TPB) length increased after redox treatment and decreased after discharge process. This TPB change was highly associated with Ni connectivity and Ni specific surface area. These microstructure changes are consistent with the change of cell performance enhancement after redox treatment and degradation after discharge process. However, TPB length density kept on increasing as redox cycles are repeated, which is inconsistent with the gradual degradation of anode performance.

  10. Chromium Release from a COPR-Contaminated Soil at Varying Water Content and Redox Conditions.

    PubMed

    Matern, Katrin; Mansfeldt, Tim

    2016-07-01

    Many soils in the region of Kanpur, North India, are heavily affected by the leather industry and its upstream supplier sector, as indicated by elevated chromium (Cr) contents. Under reducing conditions-for instance, at water saturation after monsoon rain or flood irrigation-the dynamic and species distribution of Cr may be affected due to changes in redox potential (E). In this study, the influence of E on the speciation and release of Cr from a contaminated agricultural soil was investigated. A soil sample that was affected by hyperalkaline leachate from chromite ore processing residue, was taken and packed in soil columns, and subjected to a saturation-drainage-saturation cycle. After initial water saturation, the E dropped slowly to minimum values of around ‒100 mV (calculated to pH 7), while E was controlled by CrO/CrO(s), or CrO/(Fe,Cr)OOH redox couples. Soil drainage resulted in a quick return to oxidizing conditions; i.e., E > 300 mV. The Cr species distribution and release showed a clear trend with E. At the beginning of the experiment, under oxidizing and weakly reducing conditions (E range from >100 to 300 mV), Cr(VI) was released in particular. However, under moderately reducing conditions (E range from 100 to -100 mV), Cr was gradually immobilized and irreversible sequestered via reductive precipitation. The results presented in this study provide an improved understanding of the mobility of Cr(VI) in contaminated soils at varying water contents, which is essential for the evaluation of environmental risks in this region. PMID:27380074

  11. The characterization of ferromanganese crust and its redox change, Western Pacific Magellan seamounts

    NASA Astrophysics Data System (ADS)

    Yang, K.; Kim, J. W.; Park, H.; Baik, H.; Park, K.; Kim, J.

    2015-12-01

    Biotic/abiotic redox reaction is a ubiquitous process in mineral formation and growth, and changes in elemental redox states, particularly Fe/Mn may reflect the redox conditions in the sediment/ocean when the mineral forms. Samples were dredged from the seamounts in the western Pacific, OSM11 in order to investigate the formation, growth and its implications to geological history. The crust consist of five well-defined layers (here after called "layer 1" (rim) through "layer 5" (core)). Quartz, feldspar, and hematite are detected only in the layer 1 in addition to the poorly crystallined Fe-rich vernadite, which is likely to be associated with slower growth rate compared to the layers 2-5. CFA were identified in layers 4 and 5 under XRD measurement. Visible size of white colored well crystallined CFA were only observed in layer 4; whereas nano-sized CFA in layer 5 were identified by TEM. Clay minerals such as smectite were observed by TEM with SAED pattern and EDX in layers 1 and 3. The oxidation states of Fe and Mn in Fe-rich vernadite in entire layers were determined by EELS analysis. All the layers of Mn oxide minerals was consisted with dominantly Mn4+, which is consistent with appearance of vernadite in Fe-Mn crust. Fe-rich vernadite in layers 1 and 4 were consisted with 26-52 % of Fe3+/Fetot, dominant reduced form of Fe compared to layers 2, 3, and 5. The observed alternative patterns of Fe oxidation state in five distinct layers of Fe-Mn crust is likely to be associated with the various redox conditions in seawater, changes in growth rate of crust resulting in the various oxygen exposure time, and uplift-subsidence of sea mounts. A non-cultivation-based molecular approach with T-RFLP indicated the presence of functional gene (CumA) association with Mn oxidizing bacteria in Fe-Mn crust layers. The presence of Mn oxidizing gene may suggest that the biotic Mn oxides precipitation may persist locally in the Fe-Mn crust; whereas functional gene of Fe

  12. Specific microbial populations thrive under fluctuating redox conditions in tropical soils

    NASA Astrophysics Data System (ADS)

    Deangelis, K. M.; Silver, W. L.; Thompson, A.; Firestone, M. K.

    2008-12-01

    The highly weathered soils of upland humid tropical forests are characterized by rapidly fluctuating redox conditions, dominated by Fe-oxide mineralogy, and have relatively low sulfate availability. To assess how fluctuating redox conditions and accompanying biogeochemistry impact microbial community structure and function, we collected soil cores from the Luquillo LTER forest in Puerto Rico and incubated them for 32 days under one of three redox regimes: static oxic, static anoxic, and 4-day fluctuating redox. Over this time course we measured CO2, CH4, and N2O production, amorphous iron and Fe(II), and microbial community structure by high density microarray (PhyloChip) analysis. Static oxic, anoxic, and fluctuating redox soils all had statistically indistinguishable respiration rates over the course of the experiment. Fluctuating redox conditions permitted simultaneous methanogenesis, N2O production, and iron reduction, all accompanied by steady CO2 production. We analyzed the standing and active microbial community using the 16S ribosomal DNA and RNA biomarkers, identifying 2489 taxa in these soils. Ordination analysis showed significant separation between the active (RNA-based) and standing (DNA-based) communities, with much more variation in the active community compared to the standing community. Fluctuating redox conditions maintained a microbial community structure similar to that of the pre-incubation samples, while static anaerobic conditions had the most profound effect on the communities. Finally, there was considerable overlap between the taxa that were the most highly correlated with production of CH4 and Fe(II). Association of groups of taxa with specific biogeochemical processes begins to identify organisms potentially responsible for field biogeochemical processing.

  13. Fate of Pharmaceuticals and Personal Care Products (PPCPs) in Saturated Soil Under Various Redox Conditions

    NASA Astrophysics Data System (ADS)

    Dror, I.; Menahem, A.; Berkowitz, B.

    2014-12-01

    The growing use of PPCPs results in their increasing release to the aquatic environment. Consequently, understanding the fate of PPCPs under environmentally relevant conditions that account for dynamic flow and varying redox states is critical. In this study, the transport of two organometallic PPCPs, Gd-DTPA and Roxarsone (As complex) and their metal salts (Gd(NO3)3, AsNaO2), is investigated. The former is used widely as a contrasting agent for MRI, while the latter is applied extensively as a food additive in the broiler poultry industry. Both of these compounds are excreted from the body, almost unchanged chemically. Gadolinium complexes are not fully eliminated in wastewater treatment and can reach groundwater via irrigation with treated wastewater; Roxarsone can enter groundwater via leaching from manure used as fertilizer. Studies have shown that the transport of PPCPs in groundwater is affected by environmental conditions such as redox states, pH, and soil type. For this study, column experiments using sand or Mediterranean red sandy clay soil were performed under several redox conditions: aerobic, nitrate-reducing, iron-reducing, sulfate-reducing, methanogenic, and very strongly chemical reducing. Batch experiments to determine adsorption isotherms were also performed for the complexes and metal salts. We found that Gd-DTPA transport was affected by the soil type and was not affected by the redox conditions. In contrast, Roxarsone transport was affected mainly by the different redox conditions, showing delayed breakthrough curves as the conditions became more biologically reduced (strong chemical reducing conditions did not affect the transport). We also observed that the metal salts show essentially no transport while the organic complexes display much faster breakthrough. The results suggest that transport of these PPCPs through soil and groundwater is determined by the redox conditions, as well as by soil type and the form of the applied metal (as salt

  14. An anaerobic field injection experiment in a landfill leachate plume, Grindsted, Denmark: 2. Deduction of anaerobic (methanogenic, sulfate-, and Fe (III)-reducing) redox conditions

    NASA Astrophysics Data System (ADS)

    Albrechtsen, Hans-JøRgen; Bjerg, Poul L.; Ludvigsen, Liselotte; Rügge, Kirsten; Christensen, Thomas H.

    1999-04-01

    Redox conditions may be environmental factors which affect the fate of the xenobiotic organic compounds. Therefore the redox conditions were characterized in an anaerobic, leachate-contaminated aquifer 15-60 m downgradient from the Grindsted Landfill, Denmark, where an field injection experiment was carried out. Furthermore, the stability of the redox conditions spatially and over time were investigated, and different approaches to deduce the redox conditions were evaluated. The redox conditions were evaluated in a set of 20 sediment and groundwater samples taken from locations adjacent to the sediment samples. Samples were investigated with respect to groundwater chemistry, including hydrogen and volatile fatty acids (VFAs) and sediment geochemistry, and bioassays were performed. The groundwater chemistry, including redox sensitive species for a large number of samples, varied over time during the experimental period of 924 days owing to variations in the leachate from the landfill. However, no indication of change in the redox environment resulting from the field injection experiment or natural variation was observed in the individual sampling points. The methane, Fe(II), hydrogen, and VFA groundwater chemistry parameters strongly indicated a Fe(III)-reducing environment. This was further supported by the bioassays, although methane production and sulfate-reduction were also observed in a few samples close to the landfill. On the basis of the calculated carbon conversion, Fe(III) was the dominant electron acceptor in the region of the aquifer, which was investigated. Because of the complexity of a landfill leachate plume, several redox processes may occur simultaneously, and an array of methods must be applied for redox characterization in such multicomponent systems.

  15. EFFECTS OF TEMPERATURE AND REDOX CONDITIONS ON DEGRADATION OF CHLORINATED PHENOLS IN FRESHWATER SEDIMENTS

    EPA Science Inventory

    The effect of temperature and redox conditions on the anaerobic degradation of 2,4-dichlorophenol (2,4-DCP) was investigated in anaerobic sediment slurries, prepared from local freshwater pond sediments. Under methanogenic conditions, 2,4-DCP dechlorination occurred in the temper...

  16. Real-time monitoring of redox changes in the mammalian endoplasmic reticulum

    PubMed Central

    van Lith, Marcel; Tiwari, Shweta; Pediani, John; Milligan, Graeme; Bulleid, Neil J.

    2011-01-01

    Redox-sensitive GFPs with engineered disulphide bonds have been used previously to monitor redox status in the cytosol and mitochondria of living cells. The usefulness of these redox probes depends on the reduction potential of the disulphide, with low values suiting the cytosol and mitochondrion, and higher values suiting the more oxidising environment of the endoplasmic reticulum (ER). Here, we targeted a modified redox-sensitive GFP (roGFP1-iL), with a relatively high reduction potential, to the ER of mammalian cells. We showed that the disulphide is partially oxidised, allowing roGFP1-iL to monitor changes in ER redox status. When cells were treated with puromycin, the redox balance became more reducing, suggesting that the release of nascent chains from ribosomes alters the ER redox balance. In addition, downregulating Ero1α prevented normal rapid recovery from dithiothreitol (DTT), whereas downregulating peroxiredoxin IV had no such effect. This result illustrates the contribution of the Ero1α oxidative pathway to ER redox balance. This first report of the use of roGFP to study the ER of mammalian cells demonstrates that roGFP1-iL can be used to monitor real-time changes to the redox status in individual living cells. PMID:21693587

  17. Establishment of redox conditions during planetary collisions as an origin of chondrites

    NASA Technical Reports Server (NTRS)

    Tsuchiyama, A.; Kitamura, M.

    1994-01-01

    Collisions between a 'cometlike' body (mixtures of chondritic materials and ice) and a slightly differentiated body were proposed for shock origin of ordinary chondrites. In this model, chondrules were formed with shock melting, and matrices were formed both by fracturing of materials and by recondensation of evaporated materials. This model can explain different redox conditions of chondrite formations by ice evaporation. Although this model was originally proposed for ordinary chondrites, we assume here that the model can be extended to chondrite formation in general. In this paper, redox conditions during chondrite formation by collisions will be discussed in the light of phase diagrams for solid-vapor equilibria.

  18. Arsenic distribution and speciation near rice roots influenced by iron plaques and redox conditions of the soil matrix.

    PubMed

    Yamaguchi, Noriko; Ohkura, Toshiaki; Takahashi, Yoshio; Maejima, Yuji; Arao, Tomohito

    2014-01-01

    Elevated arsenic (As) concentrations in rice and the soil solution result from changes in soil redox conditions, influenced by the water management practices during rice cultivation. Microscale changes in redox conditions from rhizosphere to soil matrix affect the As speciation and Fe plaque deposition. In order to focus on the rhizosphere environment, we observed microscale distribution and speciation of As around the rhizosphere of paddy rice with X-ray fluorescence mapping and X-ray absorption spectroscopy. When the soil matrix was anaerobic during rice growth, Fe-plaque did not cover the entire root, and As(III) was the dominant arsenic species in the soil matrix and rhizosphere. Draining before harvest led the conditions to shift to aerobic. Oxidation of As(III) to As(V) occurred faster in the Fe-plaque than the soil matrix. Arsenic was scavenged by iron mottles originating from Fe-plaque around the roots. The ratio of As(V) to As(III) decreased toward the outer-rim of the subsurface Fe mottles where the soil matrix was not completely aerated. These results provide direct evidence that speciation of As near rice roots depends on spatial and temporal redox variations in the soil matrix. PMID:24384039

  19. Electrode effects on temporal changes in electrolyte pH and redox potential for water treatment.

    PubMed

    Ciblak, Ali; Mao, Xuhui; Padilla, Ingrid; Vesper, Dorothy; Alshawabkeh, Iyad; Alshawabkeh, Akram N

    2012-01-01

    The performance of electrochemical remediation methods could be optimized by controlling the physicochemical conditions of the electrochemical redox system. The effects of anode type (reactive or inert), current density and electrolyte composition on the temporal changes in pH and redox potential of the electrolyte were evaluated in divided and mixed electrolytes. Two types of electrodes were used: iron as a reactive electrode and mixed metal oxide coated titanium (MMO) as an inert electrode. Electric currents of 15, 30, 45 and 60 mA (37.5 mA L(-1), 75 mA L(-1), 112.5 mA L(-1) and 150 mA L(-1)) were applied. Solutions of NaCl, Na(2)SO(4) and NaHCO(3) were selected to mimic different wastewater or groundwater compositions. Iron anodes resulted in highly reducing electrolyte conditions compared to inert anodes. Electrolyte pH was dependent on electrode type, electrolyte composition and current density. The pH of mixed-electrolyte was stable when MMO electrodes were used. When iron electrodes were used, the pH of electrolyte with relatively low current density (37.5 mA L(-1)) did not show significant changes but the pH increased sharply for relatively high current density (150 mA L(-1)). Sulfate solution showed more basic and relatively more reducing electrolyte conditions compared to bicarbonate and chloride solution. The study shows that a highly reducing environment could be achieved using iron anodes in divided or mixed electrolytes and the pH and redox potential could be optimized using appropriate current and polarity reversal. PMID:22416866

  20. Electrode effects on temporal changes in electrolyte pH and redox potential for water treatment

    PubMed Central

    Ciblak, Ali; Mao, Xuhui; Padilla, Ingrid; Vesper, Dorothy; Alshawabkeh, Iyad; Alshawabkeh, Akram N.

    2012-01-01

    The performance of electrochemical remediation methods could be optimized by controlling the physicochemical conditions of the electrochemical redox system. The effects of anode type (reactive or inert), current density and electrolyte composition on the temporal changes in pH and redox potential of the electrolyte were evaluated in divided and mixed electrolytes. Two types of electrodes were used: iron as a reactive electrode and mixed metal oxide coated titanium (MMO) as an inert electrode. Electric currents of 15, 30, 45 and 60 mA (37.5 mA L−1, 75 mA L−1, 112.5 mA L−1 and 150 mA L−1) were applied. Solutions of NaCl, Na2SO4 and NaHCO3 were selected to mimic different wastewater or groundwater composition. Iron anodes resulted in highly reducing electrolyte conditions compared to inert anodes. Electrolyte pH was dependent on electrode type, electrolyte composition and current density. The pH of mixed-electrolyte was stable when MMO electrodes were used. When iron electrodes were used, the pH of electrolyte with relatively low current density (37.5 mA L−1) did not show significant changes but the pH increased sharply for relatively high current density (150 mA L−1). Sulfate solution showed more basic and relatively more reducing electrolyte condition compared to bicarbonate and chloride solution. The study shows that a highly reducing environment could be achieved using iron anodes in divided or mixed electrolytes and the pH and redox potential could be optimized by using appropriate current and polarity reversal. PMID:22416866

  1. Mobilization and Release of colloidal Carbon from a Soil Column Under Redox Oscillation Condition

    NASA Astrophysics Data System (ADS)

    Afsar, M. Z.; Jin, Y.

    2015-12-01

    Dissolved organic matter (DOM), the most mobile form of carbon (C), strongly influences the cycling, distribution and behavior of C in soil. In wetlands, the reductive dissolution of iron and manganese oxy-hydroxides releases large quantities of DOM into the soil solution. The objective of this study is to quantify the changes in aqueous organic carbon concentration in different sized fractions induced by reduction of iron and increase in pH. Twenty four cm long soil columns were prepared. Columns were run under oxic (as control) and anoxic conditions. Two platinum redox probes were inserted at 10 and 17 cm depths from the soil surface to monitor the redox status of the column. Anoxic and oxic conditions were maintained by flushing with either nitrogen or oxygen gas through the soil. No additional organic sources were added. After 35 days of anoxic environment, column leachate samples were separated by differential centrifugation into five colloidal sized fractions (<450 nm, <220 nm, <100 nm, <50 nm and <2.3 nm). Immediately after the 1st reduction half cycle, the leachate samples were collected inside the glove box and the soil columns were flushed with oxygen to prepare for 2nd reduction half cycle. After 1st reduction half cycle, the pH, ionic strength and aqueous (Fe2+) concentration of the column extracts were increased whereas the Eh value was decreased. The range of pH, Eh, ionic strength and concentration of Fe2+ was 6.38 to 6.91, -219 to -275 mV, 13.74 to 18.84 mM and 1.8 to 3.41 mg L-1, respectively. Following the anoxic incubation, the total desorbed C was increased up to 139 mg L-1. The distribution of C across the five particle size fractions was 3.68-11.73% (> 450 nm), 0.59-5.12% (450-220 nm), 0.45-4.91% (220-100 nm), 0.18-2.91% (100-50 nm), 15.48-35.23% (50 nm - 2.3 nm) and 49.15-63.94% (<2.3 nm). The preliminary results confirmed the release of more nanoparticulate (50-2.3 nm) and truly dissolved (<2.3 nm) organic matter from the anoxic soil column

  2. The Cr Redox Record of fO2 Variation in Angrites. Evidence for Redox Conditions of Angrite Petrogenesis and Parent Body

    NASA Technical Reports Server (NTRS)

    Shearer, Charles K.; Bell, Aaron S.; Burger, Paul V.; Papike, James J.; Jones, John; Le, Loan

    2016-01-01

    Angrites represent some of the earliest stages of planetesimal differentiation. Not surprisingly, there is no simple petrogenetic model for their origin. Petrogenesis has been linked to both magmatic and impact processes. Studies demonstrated that melting of chondritic material (e.g. CM, CV) at redox conditions where pure iron metal is unstable (e.g., IW+1 to IW+2) produced angrite-like melts. Alternatively, angrites were produced at more reducing conditions (conditions of angrite crystallization are limited, and only preliminary attempts been made to understand the changes in fO2 that occurred during petrogenesis. Many of the angrites have phase assemblages which provide conflicting signals about redox conditions during crystallization (e.g., Fe metal and a Fe-Ti oxide with potential Fe3+. There have been several estimates of fO2 for angrites. Most notably, experiments examined the variation of DEu/DGd with fO2, between plagioclase and fassaitic pyroxene in equilibrium with an angrite melt composition. They used their observations to estimate the fO2 of crystallization to be approximately IW+0.6 for angrite LEW 86010. This estimate is only a "snapshot" of fO2 conditions during co-crystallization of plagioclase and pyroxene. Preliminary XANES analyses of V redox state in pyroxenes from D'Orbigny reported changes in fO2 from IW-0.7 during early pyroxene crystallization to IW+0.5 during latter episodes of pyroxene crystallization [15]. As this was a preliminary report, it presented limited information concerning the effects of pyroxene orientation and composition on the V valence measurements, and the effect of melt composition on valence and

  3. Effect of redox conditions on pharmaceutical loss during biological wastewater treatment using sequencing batch reactors.

    PubMed

    Stadler, Lauren B; Su, Lijuan; Moline, Christopher J; Ernstoff, Alexi S; Aga, Diana S; Love, Nancy G

    2015-01-23

    We lack a clear understanding of how wastewater treatment plant (WWTP) process parameters, such as redox environment, impact pharmaceutical fate. WWTPs increasingly install more advanced aeration control systems to save energy and achieve better nutrient removal performance. The impact of redox condition, and specifically the use of microaerobic (low dissolved oxygen) treatment, is poorly understood. In this study, the fate of a mixture of pharmaceuticals and several of their transformation products present in the primary effluent of a local WWTP was assessed in sequencing batch reactors operated under different redox conditions: fully aerobic, anoxic/aerobic, and microaerobic (DO concentration ≈0.3mg/L). Among the pharmaceuticals that were tracked during this study (atenolol, trimethoprim, sulfamethoxazole, desvenlafaxine, venlafaxine, and phenytoin), overall loss varied between them and between redox environments. Losses of atenolol and trimethoprim were highest in the aerobic reactor; sulfamethoxazole loss was highest in the microaerobic reactors; and phenytoin was recalcitrant in all reactors. Transformation products of sulfamethoxazole and desvenlafaxine resulted in the reformation of their parent compounds during treatment. The results suggest that transformation products must be accounted for when assessing removal efficiencies and that redox environment influences the degree of pharmaceutical loss. PMID:25200120

  4. Transport of gadolinium- and arsenic-based pharmaceuticals in saturated soil under various redox conditions.

    PubMed

    Menahem, Adi; Dror, Ishai; Berkowitz, Brian

    2016-02-01

    The release of pharmaceuticals and personal care products (PPCPs) to the soil-water environment necessitates understanding of PPCP transport behavior under conditions that account for dynamic flow and varying redox states. This study investigates the transport of two organometallic PPCPs, Gd-DTPA and roxarsone (arsenic compound) and their metal salts (Gd(NO3)3, AsNaO2); Gd-DTPA is used widely as a contrasting agent for MRI, while roxarsone is applied extensively as a food additive in the broiler poultry industry. Here, we present column experiments using sand and Mediterranean red sandy clay soil, performed under several redox conditions. The metal salts were almost completely immobile. In contrast, transport of Gd-DTPA and roxarsone was affected by the soil type. Roxarsone was also affected by the different redox conditions, showing delayed breakthrough curves as the redox potential became more negative due to biological activity (chemically-strong reducing conditions did not affect the transport). Mechanisms that include adsorptive retardation for aerobic and nitrate-reducing conditions, and non-adsorptive retardation for iron-reducing, sulfate-reducing and biologically-strong reducing conditions, are suggested to explain the roxarsone behavior. Gd-DTPA is found to be a stable complex, with potential for high mobility in groundwater systems, whereas roxarsone transport through groundwater systems is affected by redox environments, demonstrating high mobility under aerobic and nitrate-reducing conditions and delayed transport under iron-reducing, sulfate-reducing and biologically-strong reducing conditions. PMID:26408978

  5. Groundwater redox conditions and conductivity in a contaminant plume from geoelectrical investigations

    NASA Astrophysics Data System (ADS)

    Naudet, V.; Revil, A.; Rizzo, E.; Bottero, J.-Y.; Bégassat, P.

    Accurate mapping of the electrical conductivity and of the redox potential of the groundwater is important in delineating the shape of a contaminant plume. A map of redox potential in an aquifer is indicative of biodegradation of organic matter and of concentrations of redox-active components; a map of electrical conductivity provides information on the mineralisation of the groundwater. Both maps can be used to optimise the position of pumping wells for remediation. The self-potential method (SP) and electrical resistivity tomography (ERT) have been applied to the contaminant plume associated with the Entressen landfill in south-east France. The self-potential depends on groundwater flow (electrokinetic contribution) and redox conditions ("electro-redox" contribution). Using the variation of the piezometric head in the aquifer, the electrokinetic contribution is removed from the SP signals. A good linear correlation (R2=0.85) is obtained between the residual SP data and the redox potential values measured in monitoring wells. This relationship is used to draw a redox potential map of the overall contaminated site. The electrical conductivity of the subsoil is obtained from 3D-ERT analysis. A good linear correlation (R2=0.91) is observed between the electrical conductivity of the aquifer determined from the 3D-ERT image and the conductivity of the groundwater measured in boreholes. This indicates that the formation factor is nearly homogeneous in the shallow aquifer at the scale of the ERT. From this correlation, a map of the pore water conductivity of the aquifer is obtained.

  6. Degradation of the Herbicide Metolachlor in Drummer Soil Under Different Redox Conditions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Understanding the role of microorganisms and effect of soil environmental conditions on herbicide fate is critical for stewardship of herbicide use in cropping systems. As compared to the modernized perceptions of soil redox status, diminutive progress has been made in characterizing the impact of a...

  7. Redox potential and survival of virulent Treponema pallidum under microaerophilic conditions.

    PubMed

    Steiner, B; McLean, I; Graves, S

    1981-10-01

    A strongly reduced culture medium, capable of maintaining the virulence of Treponema pallidum (Nichols) for several days, was exposed to an atmosphere of 3% oxygen in nitrogen for 2-3 days before inoculation with T pallidum. By using various volumes of medium in uniform tubes a range of redox potentials (Ecal) from -94 mV to -325 mV was produced depending on the surface area-to-volume ratios of the medium. The anaerobic medium had an Ecal value of -387 mV. The medium was inoculated with T pallidum and incubated in an atmosphere of 3% oxygen. The survival of treponemes at different redox potentials was monitored by observing the retention of motility and by measuring the latent period of infection after inoculation of the cultures into the shaved backs of rabbits. Under these conditions T pallidum survived longest at low (electronegative) redox potential. An inverse linear relationship was observed between the redox potential of the culture medium and the survival of T pallidum, as measured by the time required for a 90% reduction of virulent organisms. No optimum redox potential was detected, the most electronegative medium (-325 mV, Ecal) giving the best survival. PMID:7028206

  8. Influence of the redox condition dynamics on the removal efficiency of a laboratory-scale constructed wetland.

    PubMed

    Wiessner, A; Kappelmeyer, U; Kuschk, P; Kästner, M

    2005-01-01

    A laboratory reactor planted with Juncus effusus treating an artificial wastewater was used to investigate the short-term and long-term variations and interactions in the redox conditions as well as the removal efficiency of C and the N turnover. The permanent circulation of the process water enabled the micro-gradient processes to be evaluated for an operating period of 20 months. Steady-state conditions were achieved throughout the operating period with high mean removal efficiencies of 92.7% total organic carbon, 82.0% ammonia and 97.6% nitrate. Daily variations in the redox state of the rhizosphere of a few hundred mV were observed, ranging from about -200 to oxidized conditions of about +200 mV and driven by daylight. Variations in pH associated with changes in light and redox were linked to the dynamics of the fates of organic and inorganic carbon species. The ammonia removal processes were found to be firmly established, including for moderately reduced redox conditions with high efficiencies for E(h)>-50 mV. The enrichment of ammonia (up to 13 mg l(-1)) closely linked to the light, particularly during summertime, indicates the existence of hitherto unconsidered additional N turnover pathways in the rhizoplane involving N(2) produced by microbes or released by plants. C turnover was strongly related to the seasonal variation in illumination with minimum efficiencies during the dark season. In addition, it was characterized by oscillation with periods of approximately 1 month. The relationships found are dominant for biofilms on the rhizoplane and decisive for the removal efficiency of especially simple constructed and natural wetlands. The results highlight the importance of helophytes and their physiological specifics for removal processes. PMID:15607183

  9. Nontronite (NAu-1) Structure Associated with Microbial Fe(III) Reduction in Various Redox Conditions

    NASA Astrophysics Data System (ADS)

    Koo, T.; Kim, S.; Kim, J.

    2011-12-01

    Shewanella oneidensis MR-1 respires the structural Fe(III) of smectite and promotes illite formation in O2-free environment (Kostka et al., 1996, Kim et al., 2004). Since S. oneidensis is a facultative iron reducing bacterium, it is crucial to understand the structural changes induced by bio-reduction of structural Fe(III) in various redox conditions. Furthermore, the changes in cation exchange capacity (CEC) of bio-reduced nontronite upon the modification of mineral structure has not been extensively studied in terms of Fe-cycling. In this present study, we reported the evolution of nontronite structure at various time points in various redox conditions and corresponding CEC upon reduction and re-oxidation. S. oneidensis MR-1 was incubated in M1 medium with Na-lactate as the electron donor and Fe in nontronite (NAu-1) as the sole electron acceptor at pH 7 in anaerobic chamber for 3 hrs, 12 hrs, 1 day, 2 days, 4 days, 7 days, 14 days, and 21 days. O2 gas bubbling was then applied to the sample at each time point for 24 hours for re-oxidation. The triplet samples at each time point for both reduction and re-oxidation experiments were prepared. The extent of Fe(III) reduction measured by 1,10-phenanthroline method (Stucki and Anderson, 1981) indicated that the structural Fe(III) was reduced up to 8.8% of total Fe(III) within 21 days. XRD data with various treatments such as air dried, glycolated and lithium-saturated showed that K-nontronite may be formed because no discrete 10-Å illite peak was observed in Li-saturated sample upon glycolation. The CEC increased from 747 meg/kg to 1145 meg/kg during Fe(III) reduction and decreased to 954 meg/kg upon re-oxidation, supporting the possible formation of K-nontronite. The direct observation by electron microscopy verified the structural changes in nontonite in various redox conditions. The long-term experiment for 6 months, is in progress in anaerobic chamber, and results will be discussed. Kim, J. W., Dong, H., Seabaugh

  10. Molybdenum isotope fractionation in soils: Influence of redox conditions, organic matter, and atmospheric inputs

    NASA Astrophysics Data System (ADS)

    Siebert, C.; Pett-Ridge, J. C.; Opfergelt, S.; Guicharnaud, R. A.; Halliday, A. N.; Burton, K. W.

    2015-08-01

    soils are controlled by redox conditions, organic matter, and atmospheric inputs. In this way Mo isotopes have the potential to react to and record climate driven changes in the weathering environment. The presence of both isotopically light and heavy Mo (relative to parent material) across all sites and within individual soil profiles suggests that it is normal for multiple fractionation mechanisms to operate under the open-system conditions of soils.

  11. Rapidly reversible redox transformation in nanophase manganese oxides at room temperature triggered by changes in hydration

    PubMed Central

    Birkner, Nancy; Navrotsky, Alexandra

    2014-01-01

    Chemisorption of water onto anhydrous nanophase manganese oxide surfaces promotes rapidly reversible redox phase changes as confirmed by calorimetry, X-ray diffraction, and titration for manganese average oxidation state. Surface reduction of bixbyite (Mn2O3) to hausmannite (Mn3O4) occurs in nanoparticles under conditions where no such reactions are seen or expected on grounds of bulk thermodynamics in coarse-grained materials. Additionally, transformation does not occur on nanosurfaces passivated by at least 2% coverage of what is likely an amorphous manganese oxide layer. The transformation is due to thermodynamic control arising from differences in surface energies of the two phases (Mn2O3 and Mn3O4) under wet and dry conditions. Such reversible and rapid transformation near room temperature may affect the behavior of manganese oxides in technological applications and in geologic and environmental settings. PMID:24733903

  12. Does phosphate enhance the natural attenuation of crude oil in groundwater under defined redox conditions?

    PubMed

    Ponsin, Violaine; Mouloubou, Olsen Raïnness; Prudent, Pascale; Höhener, Patrick

    2014-11-15

    After a crude oil spill caused by a broken pipeline in 2009 to a gravel aquifer in southern France, degradation processes under various redox conditions progressively established, but at rates that predict a long life-time of the source under natural attenuation after partial source removal. In this study, we aimed at identifying the rate-limiting factors for each redox condition, with special emphasis on phosphate as limiting nutrient. The study was conducted in laboratory microcosms assembled with material collected on site: sediments, water from monitoring wells, oil and microbial sludge. Redox conditions were promoted by adding electron acceptors (either oxygen, nitrate, limonite (FeO(OH)), cryptomelane (K(Mn(4+),Mn(2+))8O16), or sulfate). For each condition, the role of phosphate was studied by repeated additions for up to 290days. The results showed a very strong stimulation of aerobic and denitrifying rates of oil degradation by phosphate, provided that oxygen and nitrate were repeatedly supplied. Phosphate caused also a marked stimulation of methanogenic degradation, and a relatively small stimulation of metal reduction. These anaerobic processes started only after marked lag phases, and phosphate shortened the lag phase for methanogenic degradation. Degradation of aromatic and aliphatic hydrocarbons with less than 8 carbons, including benzene, was confirmed even under unstimulated conditions. It is concluded that degradation rates at the site are limited by both, availability of electron acceptors and availability of phosphate needed for promoting microbial growth. PMID:24795042

  13. Does phosphate enhance the natural attenuation of crude oil in groundwater under defined redox conditions?

    NASA Astrophysics Data System (ADS)

    Ponsin, Violaine; Mouloubou, Olsen Raïnness; Prudent, Pascale; Höhener, Patrick

    2014-11-01

    After a crude oil spill caused by a broken pipeline in 2009 to a gravel aquifer in southern France, degradation processes under various redox conditions progressively established, but at rates that predict a long life-time of the source under natural attenuation after partial source removal. In this study, we aimed at identifying the rate-limiting factors for each redox condition, with special emphasis on phosphate as limiting nutrient. The study was conducted in laboratory microcosms assembled with material collected on site: sediments, water from monitoring wells, oil and microbial sludge. Redox conditions were promoted by adding electron acceptors (either oxygen, nitrate, limonite (FeO(OH)), cryptomelane (K(Mn4 +,Mn2 +)8O16), or sulfate). For each condition, the role of phosphate was studied by repeated additions for up to 290 days. The results showed a very strong stimulation of aerobic and denitrifying rates of oil degradation by phosphate, provided that oxygen and nitrate were repeatedly supplied. Phosphate caused also a marked stimulation of methanogenic degradation, and a relatively small stimulation of metal reduction. These anaerobic processes started only after marked lag phases, and phosphate shortened the lag phase for methanogenic degradation. Degradation of aromatic and aliphatic hydrocarbons with less than 8 carbons, including benzene, was confirmed even under unstimulated conditions. It is concluded that degradation rates at the site are limited by both, availability of electron acceptors and availability of phosphate needed for promoting microbial growth.

  14. Deepwater redox changes in the southern Okinawa Trough since the last glacial maximum

    NASA Astrophysics Data System (ADS)

    Dou, Yanguang; Yang, Shouye; Li, Chao; Shi, Xuefa; Liu, Jihua; Bi, Lei

    2015-06-01

    In this study, rare earth element (REE) was treated as a paleo-redox proxy to investigate the changes of depositional environment in the southern Okinawa Trough since the last glacial maximum. The acid-leachable fraction (leachate) of the sediments recovered from the ODP Site 1202B is dominated by biogenic and authigenic components while detrital contamination is minor. The significant enrichment of middle REE suggests a large contribution from authigenic Mn oxyhydroxides and cerium (Ce) anomaly can indicate deepwater redox change. The REE parameters including Ce anomaly in the leachate exhibit remarkable and abrupt changes in the early Holocene (∼9.5 ka) and during LGM (∼20 ka). An increase of Ce anomaly at 28-22 ka implies the suboxic deepwater condition probably caused by increased primary productivity. Weak positive Ce anomalies during the last glacial maximum and deglaciation suggest an oxic depositional environment responding to the enhanced deepwater ventilation with the advection of the North Pacific Intermediate Water and/or South China Sea Intermediate Water into the trough. A decrease of Ce anomaly in the early Holocene might be caused by the intrusion and strengthening of the Kuroshio Current in the trough that enhanced the water stratification and induced a gradual development of suboxic depositional condition. Furthermore, an abrupt change of chemical composition at ca. 4 ka probably indicates a decrease of dissolved oxygen in deepwater and a weakening of ventilation in the Okinawa Trough. This study suggests that REE proxy can provide new insights into the linkage among surface current, deepwater circulation and sediment record in the continental margin where terrigenous input dominates.

  15. Reconstruction of Redox Conditions and Productivity in Coastal Waters of the Bothnian Sea during the Holocene

    NASA Astrophysics Data System (ADS)

    Dijkstra, N.; Quintana Krupinski, N. B.; Slomp, C. P.

    2014-12-01

    Hypoxia is a growing problem in coastal waters worldwide, and is a well-known cause of benthic mortality. The semi-enclosed Baltic Sea is currently the world's largest human-induced dead zone. During the early Holocene, it experienced several periods of natural hypoxia following the intrusion of seawater into the previous freshwater lake. Recent studies suggest that at that time, the hypoxia expanded north to include the deep basin of the Bothnian Sea. In this study, we assess whether the coastal zone of the Bothnian Sea was also hypoxic during the early Holocene. We analysed a unique sediment record (0 - 30 mbsf) from the Ångermanälven estuary, which was retrieved during the International Ocean Discovery Programme (IODP) Baltic Sea Paleoenvironment Expedition 347 in 2013. Using geochemical proxies and foraminifera abundances, we reconstruct the changes in redox conditions, salinity and productivity in the estuary. Our preliminary results suggest that bottom waters in this coastal basin became anoxic upon the intrusion of brackish seawater in the early Holocene and that the productivity was elevated. The presence of benthic foraminifera in this estuary during the mid-Holocene suggests more saline conditions in the Bothnian Sea than today. Due to isostatic uplift, the estuary likely gradually became more isolated from the Bothnian Sea, which itself became more isolated from the Baltic Sea. Both factors likely explain the subsequent re-oxygenation of bottom waters and gradual refreshening of the estuary as recorded in the sediments. Interestingly, the upper meters of sediment are enriched in minerals that contain iron, phosphorus and manganese. We postulate that the refreshening of the estuary triggered the formation of these minerals, thereby increasing the phosphorus retention in these sediments and further reducing primary productivity. This enhanced retention linked to refreshening may contribute to the current oligotrophic conditions in the Bothnian Sea.

  16. Global iridium anomaly, mass extinction, and redox change at the Devonian-Carboniferous boundary

    SciTech Connect

    Wang, K. Univ. of Calgary, Alberta ); Attrep, M. Jr.; Orth, C.J. )

    1993-12-01

    Iridium abundance anomalies have been found on a global scale in the Devonian-Carboniferous (D-C) boundary interval, which records one of the largest Phanerozoic mass-extinction events, an event that devastated many groups of living organisms, such as plants, ammonoids, trilobites, conodonts, fish, foraminiferans, brachiopods, and ostracodes. At or very close to the D-C boundary, there exists a geographically widespread black-shale interval, and Ir abundances reach anomalous maxima of 0.148 ppb (Montagne Noire, France), 0.138 ppb (Alberta, Canada) 0.140 ppb (Carnic Alps, Austria), 0.156 ppb (Guangxi, China), 0.258 ppb (Guizhou, China), and 0.250 ppb (Oklahoma). The discovery of global D-C Ir anomalies argues for an impact-extinction model. However, nonchondritic ratios of Ir to other important elements and a lack of physical evidence (shocked quartz, microtektites) do not support such a scenario. The fact that all Ir abundance maxima are at sharp redox boundaries in these sections leads us to conclude that the Ir anomalies likely resulted from a sudden change in paleo-redox conditions during deposition and/or early diagenesis. 36 refs., 2 figs., 1 tab.

  17. Glutamate-induced metabolic changes influence the cytoplasmic redox state of hippocampal neurons.

    PubMed

    Porras, Omar H; Stutzin, Andrés

    2011-07-22

    Brain cell metabolism is intimately associated with intracellular oxidation-reduction (redox) balance. Glutamatergic transmission is accompanied with changes in substrate preference in neurons. Therefore, we studied cytoplasmatic redox changes in hippocampal neurons in culture exposed to glutamate. Neurons were transfected with HyPer, a genetically encoded redox biosensor for hydrogen peroxide which allows real-time imaging of the redox state. The rate of fluorescence decay, corresponding to the reduction of the biosensor was found to be augmented by low doses of glutamate (10 μM) as well as by pharmacological stimulation of NMDA glutamate receptors. Acute chelation of extracellular Ca(2+) abolished the glutamate-induced effect observed on HyPer fluorescence. Additional experiments indicated that mitochondrial function and hence energetic substrate availability commands the redox state of neurons and is required for the glutamate effect observed on the biosensor signal. Furthermore, our results implicated astrocytic metabolism in the changes of neuronal redox state observed with glutamate. PMID:21708127

  18. Microbial impacts on the geochemistry evolution in a nuclear waste repository -Laboratory experiment of microbially mediated redox changes-

    NASA Astrophysics Data System (ADS)

    Nagaoka, T.

    2010-12-01

    It is important to investigate geochemical evolution around nuclear waste repositories, because geochemical conditions could affect radionuclide migration. Therefore, a laboratory jar experiment was conducted with subsurface sediments, in order to assess the response of the geochemical and microbial communities toward redox processes. The redox process was induced by exposure to air and discontinuation to sediment suspension, which simulated the process occurring during operation of nuclear waste repositories, i.e., tunnel excavation, transport of waste containers, and final backfilling. During the experiments, redox potential, dissolved oxygen, and pH in the suspension were measured, and the concentrations of dissolved ions concentration (e.g., NO3-, SO42- and organic acid), HCl-extractable iron, and also head space gasses (e.g., CO2, CH4) in the jar were analyzed. Moreover, microbial DNA was extracted from the suspension, and PCR-DGGE analysis was performed to analyze the response of microbial communities toward the geochemical changes. As a results, after discontinuation of air exposure with lactate amendment, redox potentials decreased from ca. +300 mV to -430 m V (vs. Ag/AgCl), and the sequential terminal electron-accepting process (TEAPs) was observed with the reactions of aerobic respiration, nitrate reduction, iron reduction, sulfate reduction, and methanogenesis. The related species of the microbes along with TEAPs, e.g., Pseudomonas sp. for nitrate reduction and Desulfovibrio sp. for sulfate reduction, was also detected. These results indicated that the microbial activities would affect the geochemical changes in nuclear repositories.

  19. TRP Channels as Sensors and Signal Integrators of Redox Status Changes

    PubMed Central

    Takahashi, Nobuaki; Mori, Yasuo

    2011-01-01

    Proteins are capable of sensing the redox status of cells. Cysteine residues, which react with oxidants, reductants, and electrophiles, have been increasingly recognized as the mediators of this redox sensitivity. Cation channels encoded by the transient receptor potential (trp) gene superfamily are characterized by a wide variety of activation triggers that act from outside and inside the cell. Recent studies have revealed that a class of TRP channels is sensitive to changes in redox status and is notably susceptible to modifications of cysteine residues, such as oxidation, electrophilic reaction, and S-nitrosylation of sulfhydryls. In this review, we focus on TRP channels, which directly sense redox status, and discuss the biological significance of cysteine modifications and the consequences of this chemical reaction for physiological responses. PMID:22016736

  20. Intermittent fasting results in tissue-specific changes in bioenergetics and redox state.

    PubMed

    Chausse, Bruno; Vieira-Lara, Marcel A; Sanchez, Angélica B; Medeiros, Marisa H G; Kowaltowski, Alicia J

    2015-01-01

    Intermittent fasting (IF) is a dietary intervention often used as an alternative to caloric restriction (CR) and characterized by 24 hour cycles alternating ad libitum feeding and fasting. Although the consequences of CR are well studied, the effects of IF on redox status are not. Here, we address the effects of IF on redox state markers in different tissues in order to uncover how changes in feeding frequency alter redox balance in rats. IF rats displayed lower body mass due to decreased energy conversion efficiency. Livers in IF rats presented increased mitochondrial respiratory capacity and enhanced levels of protein carbonyls. Surprisingly, IF animals also presented an increase in oxidative damage in the brain that was not related to changes in mitochondrial bioenergetics. Conversely, IF promoted a substantial protection against oxidative damage in the heart. No difference in mitochondrial bioenergetics or redox homeostasis was observed in skeletal muscles of IF animals. Overall, IF affects redox balance in a tissue-specific manner, leading to redox imbalance in the liver and brain and protection against oxidative damage in the heart. PMID:25749501

  1. The stability of some selected amino acids under attempted redox constrained hydrothermal conditions.

    PubMed

    Andersson, E; Holm, N G

    2000-02-01

    In order to evaluate the stability of aspartic acid, serine, leucine, and alanine under redox buffered hydrothermal conditions, a series of experiments have been performed. The pyrite-pyrrhotite-magnetite (PPM) mineral assemblage was used in the experimental systems in order to constrain the oxygen fugacity. Likewise, the K-feldspar-muscovite-quartz (KMQ) assemblage was added to control the hydrogen ion activity during the experiments. The purpose was to compare the relative stabilities in buffered and unbuffered experiments. The experiments were conducted at 200 degrees C and 50 bar in Teflon coated autoclaves. Glycine, which was not present initially, started to appear at an early stage in the experimental systems and is believed to be the result of decomposition of serine. Similarly, the increase in relative abundance of alanine is likely to be the result of decomposition of serine. Decomposition rates of leucine, alanine and aspartic acid were found to be lower in experiments containing the redox buffer assemblage pyrite-pyrrhotite-magnetite than in non-redox buffered experiments. The decomposition rate of serine was higher in buffered experiments, which indicates that a transformation pathway via dehydration of serine to dehydroalanine followed by reduction to alanine is promoted by reducing conditions. PMID:10836261

  2. Requirement of ArcA for redox regulation in Escherichia coli under microaerobic but not anaerobic or aerobic conditions.

    PubMed

    Alexeeva, Svetlana; Hellingwerf, Klaas J; Teixeira de Mattos, M Joost

    2003-01-01

    In Escherichia coli, the two-component regulatory ArcAB system functions as a major control system for the regulation of expression of genes encoding enzymes involved in both aerobic and anaerobic catabolic pathways. Previously, we have described the physiological response of wild-type E. coli to changes in oxygen availability through the complete range from anaerobiosis to full aerobiosis (S. Alexeeva, B. de Kort, G. Sawers, K. J. Hellingwerf, and M. J. Teixeira de Mattos, J. Bacteriol. 182:4934-4940, 2000, and S. Alexeeva, K. J. Hellingwerf, and M. J. Teixeira de Mattos, J. Bacteriol. 184:1402-1406, 2002). Here, we address the question of the contribution of the ArcAB-dependent transcriptional regulation to this response. Wild-type E. coli and a mutant lacking the ArcA regulator were grown in glucose-limited chemostat cultures at controlled levels of oxygen availability ranging from full aerobiosis to complete anaerobiosis. A flux analysis of the distribution of catabolic fluxes over parallel pathways was carried out, and the intracellular redox state (as reflected by the NADH/NAD ratio) was monitored for all steady states. Deletion of ArcA neither significantly altered the in vivo activity of the pyruvate dehydrogenase complex and pyruvate formate lyase nor significantly affected catabolism under fully aerobic and fully anaerobic conditions. In contrast, profound effects of the absence of ArcA were seen under conditions of oxygen-restricted growth: increased respiration, an altered electron flux distribution over the cytochrome o- and d-terminal oxidases, and a significant change in the intracellular redox state were observed. Thus, the ArcA regulator was found to exert major control on flux distribution, and it is concluded that the ArcAB system should be considered a microaerobic redox regulator. PMID:12486057

  3. Robustness of fossil fish teeth for seawater neodymium isotope reconstructions under variable redox conditions in an ancient shallow marine setting

    NASA Astrophysics Data System (ADS)

    Huck, Claire E.; van de Flierdt, Tina; Jiménez-Espejo, Francisco J.; Bohaty, Steven M.; Röhl, Ursula; Hammond, Samantha J.

    2016-03-01

    Fossil fish teeth from pelagic open ocean settings are considered a robust archive for preserving the neodymium (Nd) isotopic composition of ancient seawater. However, using fossil fish teeth as an archive to reconstruct seawater Nd isotopic compositions in different sedimentary redox environments and in terrigenous-dominated, shallow marine settings is less proven. To address these uncertainties, fish tooth and sediment samples from a middle Eocene section deposited proximal to the East Antarctic margin at Integrated Ocean Drilling Program Site U1356 were analyzed for major and trace element geochemistry, and Nd isotopes. Major and trace element analyses of the sediments reveal changing redox conditions throughout deposition in a shallow marine environment. However, variations in the Nd isotopic composition and rare earth element (REE) patterns of the associated fish teeth do not correspond to redox changes in the sediments. REE patterns in fish teeth at Site U1356 carry a typical mid-REE-enriched signature. However, a consistently positive Ce anomaly marks a deviation from a pure authigenic origin of REEs to the fish tooth. Neodymium isotopic compositions of cleaned and uncleaned fish teeth fall between modern seawater and local sediments and hence could be authigenic in nature, but could also be influenced by sedimentary fluxes. We conclude that the fossil fish tooth Nd isotope proxy is not sensitive to moderate changes in pore water oxygenation. However, combined studies on sediments, pore waters, fish teeth, and seawater are needed to fully understand processes driving the reconstructed signature from shallow marine sections in proximity to continental sources.

  4. Tracking changes in ocean redox during the PETM using stable chromium isotopes

    NASA Astrophysics Data System (ADS)

    Dixon, S. K.; Parkinson, I. J.; Sexton, P.; Fehr, M.; James, R. H.; Peacock, C.

    2012-12-01

    Climate models predict a decline in oceanic dissolved oxygen under global warming conditions and observations suggest the expansion of tropical oxygen minimum zones is already underway1, with concern over the trend for future seawater oxygen levels. Therefore, previous deoxygenation events in the geological record may provide insight into the dynamics of changing oxygen levels in the Earth's oceans. One such event, is the Palaeocene-Eocene Thermal Maximum (PETM) at ~55Ma which represents a period of rapid global warming. Multiple lines of evidence suggest that at least on a local scale, near bottom anoxia occurred during the event2,3 and further understanding of changing redox conditions during this period may provide insight into future sea level oxygenation. To track seawater oxygenation during the PETM, we are utilising stable Cr isotope composition of marine carbonates, a new palaeo-redox proxy, which has shown potential when applied to modern and ancient carbonates 4,5. We present δ53Cr, trace element and REE data of foraminiferal ooze deposits over the PETM interval. Samples were taken from the North East Atlantic DSDP site 401, which preserves an exceptional and complete carbonate sequence over the interval, at a time when ocean acidification lead to massive sea floor carbonate dissolution6. Foraminifera were taken from the 63 - 150μm size fraction and planktic count data indicate that the relative proportions of dominant species do not change significantly over the event7. Systematic changes occur in REEs, Cr concentration and δ53Cr coincident with the onset of the negative δ13C excursion. The Cr concentrations of the carbonates decrease into the event, which suggests the sea level Cr concentration has fallen. We interpret this to reflect falling oxygen concentration in the seawater, leading to a decrease in aqueous Cr (VI) via precipitation of Cr out of the water column in the form of insoluble Cr (III) hydroxide. Additionally, we will demonstrate how

  5. The effect of redox conditions and bioirrigation on nitrogen isotope fractionation in marine sediments

    NASA Astrophysics Data System (ADS)

    Rooze, J.; Meile, C.

    2016-07-01

    Nitrogen isotopic signatures of sources and sinks of fixed nitrogen (N) can be used to constrain marine nitrogen budgets. However, the reported fractionation during benthic N2 production varies substantially. To assess the range and mechanisms responsible for such observations, we conducted a model study to evaluate the extent to which nitrification, denitrification, and anaerobic ammonium oxidation contribute to the isotopic composition of in situ N2 production. Different hydrodynamic regimes were taken into account, ranging from bioirrigation to diffusion-dominated transport. The benthic redox conditions were found to control the N isotope effect, which under reducing conditions is driven by fractionation during nitrification and anaerobic ammonium oxidation and under oxidizing conditions by fractionation during denitrification. Environmental parameters, such as the mineralization rate, the bioirrigation intensity, and chemical composition of the overlying water affect the benthic redox zonation and therefore also the benthic N isotope effect. The N isotope effect of benthic N2 production was computed for a wide range of bioirrigation intensities and mineralization rates, and found to be approximately -3‰ for commonly encountered conditions. This value is similar to previous estimates of the global N isotope effect of benthic N2 production, and further constrains the relative importance of water column vs. benthic N2 production.

  6. Changes in redox properties of humic acids upon sorption to alumina

    NASA Astrophysics Data System (ADS)

    Subdiaga, Edisson; Orsetti, Silvia; Jindal, Sharmishta; Haderlein, Stefan B.

    2016-04-01

    1. Introduction A prominent role of Natural Organic Matter (NOM) in biogeochemical processes is its ability to act as an electron shuttle, accelerating rates between a bulk electron donor and an acceptor. The underlying processes are reversible redox reactions of quinone moieties.1 This shuttling effect has been studied in two major areas: transformation of redox active pollutants and microbial respiration.2-3 Previous studies primarily compared effects in the presence or absence of NOM without addressing the redox properties of NOM nor its speciation. The interaction between humic acids (HA) and minerals might change properties and reactivity of organic matter. Specifically, we investigate whether changes in the redox properties of a HA occur upon sorption to redox inactive minerals. Since fractionation and conformational rearrangements of NOM moieties upon sorption are likely to happen, the redox properties of the NOM fractions upon sorption might differ as well. 2. Materials and methods Elliot Soil Humic Acid (ESHA), Pahokee Peat Humic Acid (PPHA) and Suwannee River Humic Acid (SRHA) were used as received from IHSS. Aluminum oxide (Al2O3) was suspended in 0.1M KCl. Sorption was studied at pH 7.0 in duplicate batch experiments for several HA/Al2O3 ratios. For the suspension (mineral + sorbed HA, plus dissolved HA), the filtrate (0.45μm) and the HA stock solution, the electron donating and accepting capacities (EDC and EAC) were determined following established procedures.4 3. Results All studied HA-Al2O3 systems showed similar behavior with regard to changes in redox properties. There was a significant increase in the EDC of the whole suspension compared to the stock solutions and the non-sorbed HA in the filtrate (up to 300% for PPHA). This effect was more pronounced with increasing amounts of sorbed HA in the suspension. Although ESHA had the highest sorption capacity on Al2O3 (~ 6 times higher than PPHA & SRHA), it showed the smallest changes in redox

  7. Fungal and bacterial mediated denitrification in wetlands: influence of sediment redox condition.

    PubMed

    Seo, Dong Cheol; DeLaune, R D

    2010-04-01

    Fungal and bacterial denitrification rates were determined under a range of redox conditions in sediment from a Louisiana swamp forest used for wastewater treatment. Sediment was incubated in microcosms at 6 Eh levels (-200, -100, 0, +100, +250 and +400 mV) ranging from strongly reducing to moderately oxidizing conditions. Denitrification was determined using the substrate-induced respiration (SIR) inhibition and acetylene inhibition methods. Cycloheximide (C15H23NO4) was used as the fungal inhibitor and streptomycin (C21H39N7O12) as the bacterial inhibitor. At Eh values of +250 mV and +400 mV, denitrification rates by fungi and bacteria were 34.3-35.1% and 1.46-1.59% of total denitrification, respectively, indicating that fungi were responsible for most of the denitrification under aerobic or weakly reducing conditions. On the other hand, at Eh -200 mV, denitrification rates of fungi and bacteria were 17.6% and 64.9% of total denitrification, respectively, indicating that bacteria were responsible for most of the denitrification under strongly reducing conditions. Results show fungal denitrification was dominant under moderately reducing to weakly oxidizing conditions (Eh>+250 mV), whereas bacterial denitrification was dominant under strongly reducing condition (Eh<-100 mV). At Eh values between -100 to +100 mV, denitrification by fungi and bacteria were 37.9-43.2% and 53.0-51.1% of total denitrification, respectively, indicating that both bacteria and fungi contributed significantly to denitrification under these redox conditions. Because N2O is an important gaseous denitrification product in sediment, fungal denitrification could be of greater ecological significance under aerobic or moderately reducing conditions contributing to greenhouse gas emission and global warming potential (GWP). PMID:20122708

  8. Release of arsenic from a Haplic Gleysol under controlled redox conditions

    NASA Astrophysics Data System (ADS)

    Mansfeldt, T.; Overesch, M.

    2009-04-01

    The redox potential (EH) governs the solubility of trace elements in soils, mainly by the reductive dissolution of iron (hydr)oxides, which are important adsorbents. Similarly the species distribution of some trace elments in soils strongly depends on EH. Species distribution in turn affects the solubility and toxicity of trace elements. Hence, the EH is a master variable for the behaviour of trace elements in soil. Arsenic is such a redox-sensitive trace element. In the lowlands of southern Münsterland, North Rhine-Westphalia (Germany), various Gleysols under grassland recently have been found to be naturally enriched with arsenic. Field measurements at such a site revealed high variations in soil EH during the course of the time with a range of 900 mV. We initiated a laboratory study to determine the effects of different redox regimes (oxidizing, moderately reducing and reducing soil conditions) both on the solubility and speciation of As. The batch study was performed using the AhBg, Bg1 and Bg2 horizons from a Haplic Gleysol. Total arsenic contents increased with increasing soil depth from 121, 613 to 1.004 mg/kg As. Fixed redox potentials in stirred soil suspensions were achieved by flushing closed glass microcosms with either N2 or air during 40 days. Redox potential and pH of the suspension were continuously recorded. In intervals of 48 hours, subsamples of 40 ml were taken from a sampling port by a tube connected to a vacuum filtration device (0.45 µm). The filtrates were analyzed for DOC, TIC, nitrate, sulfate, phosphate, and total Mn, Fe and total As. Also, Fe2+ and As(III) were determined. First results indicate that lowering EH from 450 to -100 mV (pH 7) results in a significant increase of pH and concentrations of DOC, TIC, total Fe, Fe2+, Mn, and total As in solution. Significant concentrations of As(III) could be observed at EH values below 100 mV.

  9. Impact of hydroquinone used as a redox effector model on potential denitrification, microbial activity and redox condition of a cultivable soil.

    PubMed

    Perotti, Elda B R

    2015-01-01

    In this microcosm study, we analyzed the effect produced by hydroquinone on the expression of soil biological denitrification, in relation to the redox state of the soil, both in terms of intensity factor (Eh') and capacity factor (amount of oxidized or reduced compounds). The supplementation of an Argiudoll soil with hydroquinone decreased the soil apparent reduction potential (Eh') and soil dehydrogenase activity (formazan production from tetrazolium chloride reduction; redox capacity factor), the relationship between both factors being highly significative, r=0.99 (p<0.001). The bacterial population (measured by colony forming units) increased, and the production of N2O was greater (p<0.001) at 200 and 400μg/g dry soil doses. Furthermore, there was an inverse relationship between soil dehydrogenase activity and the number of bacteria (r=-0.82; p<0.05), increased denitrification activity and changes in the CO2/N2O ratio value. These results suggest that hydroquinone at supplemented doses modified the soil redox state and the functional structure of the microbial population. Acetate supplementation on soil with hydroquinone, to ensure the availability of an energy source for microbial development, confirmed the tendency of the results obtained with the supplementation of hydroquinone alone. The differences observed at increased doses of hydroquinone might be explained by differences on the hydroquinone redox species between treatments. PMID:26364186

  10. Influence of pH and Redox Conditions on Copper Leaching

    SciTech Connect

    Kavanaugh, Rathi; Al-Abed, Souhail R.; Purandare, Jaydeep; Allen, Derrick

    2004-03-31

    The Toxicity Characteristic Leaching Procedure (TCLP) is a regulatory leach test in the RCRA programs. It was developed to determine the leaching potential of landfilled waste in order to assess the hazards associated with the leachates. The test was developed to study concentration of hazardous materials in leachates, under a mismanagement scenario, when they are co-disposed with municipal waste. The test uses leaching of waste at either of two acidic pH values i.e., 2.8 and 4.93. While low pH leachant can extract many metals, some metals soluble at higher pH values are either underestimated or totally unaccounted for. The method also has limitations for application to different waste matrices. The procedure does not take into account the effect of redox conditions on leaching. Leaching studies are, therefore, being conducted to determine the effect of combinations of Eh and pH on the leaching potential of mineral and organic wastes. The goal of this study is to propose alternate methods applicable for a variety of waste matrices. The presentation will discuss the effects of combinations of pH and redox conditions on the leaching behavior of copper from a mineral processing waste.

  11. Kinetics of trace metal removal from tidal water by mangrove sediments under different redox conditions

    NASA Astrophysics Data System (ADS)

    Suzuki, K. N.; Machado, E. C.; Machado, W.; Bellido, A. V. B.; Bellido, L. F.; Osso, J. A.; Lopes, R. T.

    2014-02-01

    The extent in which redox conditions can affect the removal kinetics of 58Co and 65Zn from tidal water by mangrove sediments was evaluated in microcosm experiments, simulating a tidal flooding period of 6 h. The average half-removal time (t1/2) of 58Co from overlaying water was slightly higher (7.3 h) under an N2-purged water column than under an aerated water column (5.4 h). A lower difference was found for 65Zn (1.9 h vs. 1.5 h, respectively). Average removals of 58Co activities from water were 54.6% (N2 treatment) and 43.5% (aeration treatment), whereas these values were 88.0% and 92.7% for 65Zn, respectively. Very contrasting sorption kinetics of different radiotracers occurred, while more oxidising conditions favoured only a slightly higher removal. Average 58Co and 65Zn inventories within sediments were 30.4% and 18.8% higher in the aeration treatment, respectively. A stronger particle-reactive behaviour was found for 65Zn that was less redox-sensitive and more efficiently removed by sediments than 58Co.

  12. Effect of Oxygen and Redox Potential on Glucose Fermentation in Thermotoga maritima under Controlled Physicochemical Conditions

    PubMed Central

    Lakhal, Raja; Auria, Richard; Davidson, Sylvain; Ollivier, Bernard; Dolla, Alain; Hamdi, Moktar; Combet-Blanc, Yannick

    2010-01-01

    Batch cultures of Thermotoga maritima were performed in a bioreactor equipped with instruments adapted for experiments performed at 80°C to mimic the fluctuating oxidative conditions in the hot ecosystems it inhabits. When grown anaerobically on glucose, T. maritima was shown to significantly decrease the redox potential (Eh) of the culture medium down to about −480 mV, as long as glucose was available. Addition of oxygen into T. maritima cultures during the stationary growth phase led to a drastic reduction in glucose consumption rate. However, although oxygen was toxic, our experiment unambiguously proved that T. maritima was able to consume it during a 12-hour exposure period. Furthermore, a shift in glucose metabolism towards lactate production was observed under oxidative conditions. PMID:21461371

  13. A New Dimensionless Number for Redox Conditions within the Hyporheic Zone: Morphological and Biogeochemical Controls

    NASA Astrophysics Data System (ADS)

    Marzadri, A.; Tonina, D.; Bellin, A.

    2012-12-01

    We introduce a new Damköhler number, Da, to quantify the biogeochemical status of the hyporheic zone and to upscale local hyporheic processes to reach scale. Da is defined as the ratio between the median hyporheic residence time, τup,50, which is a representative time scale of the hyporheic flow, and a representative time scale of biogeochemical reactions, which we define as the time τlim needed to consume dissolved oxygen to a prescribed threshold concentration below which reducing reactions are activated: Da = τup,50/τlim. This approach accounts for streambed topography and surface hydraulics via the hyporheic residence time and biogeochemical reaction via the time limit τlim. Da can readily evaluate the redox status of the hyporheic zone. Values of Da larger than 1 indicate prevailing anaerobic conditions, whereas values smaller than 1 prevailing aerobic conditions. This new Damköhler number can quantify the efficiency of hyporheic zone in transforming dissolved inorganic nitrogen species such as ammonium and nitrate, whose transformation depends on the redox condition of the hyporheic zone. We define a particular value of Da, Das, that indicates when the hyporheic zone is a source or a sink of nitrate. This index depends only on the relative abundance of ammonium and nitrate. The approach can be applied to any hyporheic zone of which the median hyporheic residence time is known. Application to streams with pool-riffle morphology shows that Da increases passing from small to large streams implying that the fraction of the hyporheic zone in anaerobic conditions increases with stream size.

  14. Modeling the Time-dependent Changes in Electrical Conductivity of Basaltic Melts With Redox State

    NASA Astrophysics Data System (ADS)

    Pommier, A.; Gaillard, F.; Pichavant, M.

    2008-12-01

    The electrical conductivity σ is an efficient probe of mass transfer processes within silicate melts and magmas. Little attention has been given to the influence of redox state (fO2) on the melts conductivity. We present an experimental setup allowing electrical conductivity measurements for basaltic melts under variable fO2. We demonstrate a significant dependence of σ with fO2, allowing to characterize in situ the mechanisms and kinetics of redox changes in the melt. Experiments were conducted on basalts from Pu'u 'O'o, Hawaii, and Mt.Vesuvius, Italy. Measurements were performed cylindrical glass samples (OD: 6mm, ID: 1mm, L: 8mm) using an impedance spectrometer. Experiments were conducted in a 1atm vertical furnace, from 1200°C to 1400°C. Variable gas atmosphere (air, CO2 or CO-CO2 gas mixtures) were used, imposing ΔNNO from -1 to +7. Electrical conductivities were determined for the two melts at constant fO2, different T (constant fO2) and constant T, different fO2 (variable fO2) obtained by changing the gas composition. Isothermal reduction and oxidation cycles were performed. Glasses quenched from different T and fO2 conditions were analyzed by electron microprobe, the FeO concentration was determined by wet chemistry. In constant fO2 experiments, a small but detectable effect of fO2 on σ is evidenced. At 1300°C, the difference in the Kilauea sample conductivity between reduced (ΔNNO=-1) and oxidized (ΔNNO=+7) fO2 is <1(ohm.m)-1, the sample being more conductive when reduced. The temperature dependence of σ was fitted using Arrhenian equations, the activation energy Ea being 100kJ/mol. Sodium was identified as the main charge carrier in the melts. The fO2-effect on σ can thus be attributed to the influence of the Fe2+/Fe3+ ratio on sodium mobility. The fO2-dependence of σ was included in the model of Pommier et al.(2008), allowing the conductivity of natural melts to be calculated as a function of T, P, H2O, and fO2. Variable fO2 experiments

  15. Instability of bottom-water redox conditions during accumulation of Quaternary sediment in the Japan Sea

    USGS Publications Warehouse

    Piper, D.Z.; Isaacs, C.M.

    1996-01-01

    The concentrations of Cd, Cr, Cu, Mo, Ni, Sb, U, V, and Zn were measured in early Quaternary sediment (1.32 to 1.08 Ma) from the Oki Ridge in the Japan Sea. The elements were partitioned between a detrital fraction, composed of terrigenous and volcaniclastic aluminosilicate debris, and a marine fraction, composed of biogenic and hydrogenous debris derived from seawater. The most important factors controlling minor-element accumulation rates in the marine fraction were (1) primary productivity in the photic zone, which largely controlled the flux of particulate organic-matter-bound minor elements settling through the water column and onto the seafloor, and (2) bottom-water redox, which determined the suite of elements that accumulated directly from seawater. This marine fraction of minor elements on Oki Ridge recorded six periods of high minor-element abundance. Assuming a constant bulk sediment accumulation rate, each period lasted roughly 5,000 to 10,000 years with a 41,000-year cycle. Accumulation rates of individual elements such as Cd, Mo, and U suggest sulfate-reducing conditions were established in the bottom water during the 10,000-year periods; accumulation rates of Cr and V during the intervening periods are indicative of less reducing, denitrifying conditions. Interelement ratios, for example, Cu:Mo, V:Cr, and Sb:Mo, further reflect bottom-water instability, such that bottom-water redox actually varied from sulfate reducing to denitrifying during the periods of highest minor-element accumulation rates; it varied from denitrifying to oxidizing during the intervening periods. Sediment lithology supports these interpretations of the minor-element distributions; the sediment is finely laminated for several of the periods represented by Cd, Mo, and U maxima and weakly laminated to bioturbated for the intervening periods. The geochemistry of this sediment demonstrates the unambiguous signal of Mo, principally, but of several other minor elements as well in

  16. Microcosm experiments to control anaerobic redox conditions when studying the fate of organic micropollutants in aquifer material.

    PubMed

    Barbieri, Manuela; Carrera, Jesús; Sanchez-Vila, Xavier; Ayora, Carlos; Cama, Jordi; Köck-Schulmeyer, Marianne; López de Alda, Miren; Barceló, Damià; Tobella Brunet, Joana; Hernández García, Marta

    2011-11-01

    The natural processes occurring in subsurface environments have proven to effectively remove a number of organic pollutants from water. The predominant redox conditions revealed to be one of the controlling factors. However, in the case of organic micropollutants the knowledge on this potential redox-dependent behavior is still limited. Motivated by managed aquifer recharge practices microcosm experiments involving aquifer material, settings potentially feasible in field applications, and organic micropollutants at environmental concentrations were carried out. Different anaerobic redox conditions were promoted and sustained in each set of microcosms by adding adequate quantities of electron donors and acceptors. Whereas denitrification and sulfate-reducing conditions are easily achieved and maintained, Fe- and Mn-reduction are strongly constrained by the slower dissolution of the solid phases commonly present in aquifers. The thorough description and numerical modeling of the evolution of the experiments, including major and trace solutes and dissolution/precipitation of solid phases, have been proven necessary to the understanding of the processes and closing the mass balance. As an example of micropollutant results, the ubiquitous beta-blocker atenolol is completely removed in the experiments, the removal occurring faster under more advanced redox conditions. This suggests that aquifers constitute a potentially efficient alternative water treatment for atenolol, especially if adequate redox conditions are promoted during recharge and long enough residence times are ensured. PMID:22115096

  17. Microcosm experiments to control anaerobic redox conditions when studying the fate of organic micropollutants in aquifer material

    NASA Astrophysics Data System (ADS)

    Barbieri, Manuela; Carrera, Jesús; Sanchez-Vila, Xavier; Ayora, Carlos; Cama, Jordi; Köck-Schulmeyer, Marianne; López de Alda, Miren; Barceló, Damià; Tobella Brunet, Joana; Hernández García, Marta

    2011-11-01

    The natural processes occurring in subsurface environments have proven to effectively remove a number of organic pollutants from water. The predominant redox conditions revealed to be one of the controlling factors. However, in the case of organic micropollutants the knowledge on this potential redox-dependent behavior is still limited. Motivated by managed aquifer recharge practices microcosm experiments involving aquifer material, settings potentially feasible in field applications, and organic micropollutants at environmental concentrations were carried out. Different anaerobic redox conditions were promoted and sustained in each set of microcosms by adding adequate quantities of electron donors and acceptors. Whereas denitrification and sulfate-reducing conditions are easily achieved and maintained, Fe- and Mn-reduction are strongly constrained by the slower dissolution of the solid phases commonly present in aquifers. The thorough description and numerical modeling of the evolution of the experiments, including major and trace solutes and dissolution/precipitation of solid phases, have been proven necessary to the understanding of the processes and closing the mass balance. As an example of micropollutant results, the ubiquitous beta-blocker atenolol is completely removed in the experiments, the removal occurring faster under more advanced redox conditions. This suggests that aquifers constitute a potentially efficient alternative water treatment for atenolol, especially if adequate redox conditions are promoted during recharge and long enough residence times are ensured.

  18. Redox-linked conformational changes of a multiheme cytochrome from Geobacter sulfurreducens

    SciTech Connect

    Morgado, Leonor; Bruix, Marta; Londer, Yuri Y.; Pokkuluri, P. Raj; Schiffer, Marianne; Salgueiro, Carlos A. . E-mail: csalgueiro@dq.fct.unl.pt

    2007-08-17

    Multiheme c-type cytochromes from members of the Desulfovibrionacea and Geobactereacea families play crucial roles in the bioenergetics of these microorganisms. Thermodynamic studies using NMR and visible spectroscopic techniques on tetraheme cytochromes c {sub 3} isolated from Desulfovibrio spp. and more recently on a triheme cytochrome from Geobacter sulfurreducens showed that the properties of each redox centre are modulated by the neighbouring redox centres enabling these proteins to perform energy transduction and thus contributing to cellular energy conservation. Electron/proton transfer coupling relies on redox-linked conformational changes that were addressed for some multiheme cytochromes from the comparison of protein structure of fully reduced and fully oxidised forms. In this work, we identify for the first time in a multiheme cytochrome the simultaneous presence of two different conformations in solution. This was achieved by probing the different oxidation stages of a triheme cytochrome isolated from G. sulfurreducens using 2D-NMR techniques. The results presented here will be the foundations to evaluate the modulation of the redox centres properties by conformational changes that occur during the reoxidation of a multiheme protein.

  19. RoGFP1 is a quantitative biosensor in maize cells for cellular redox changes caused by environmental and endogenous stimuli.

    PubMed

    Liu, Xiaoning; Wu, Jiamei; Liu, Hao; Zong, Na; Zhao, Jun

    2014-09-26

    Reduction-oxidation-sensitive green fluorescent proteins (roGFPs) have been demonstrated to be valuable tools in sensing cellular redox changes in mammalian cells and model plants, yet have not been applied in crops such as maize. Here we report the characteristics of roGFP1 in transiently transformed maize mesophyll protoplasts in response to environmental stimuli and knocked-down expression of ROS-scavenging genes. We demonstrated that roGFP1 in maize cells ratiometrically responds to cellular redox changes caused by H2O2 and DTT, as it does in mammalian cells and model plants. Moreover, we found that roGFP1 is sensitive enough to cellular redox changes caused by genetic perturbation of single ROS genes, as exemplified by knocked-down expression of individual ZmAPXs, in maize protoplasts under controlled culture conditions and under stress conditions imposed by H2O2 addition. These data provide evidence that roGFP1 functions in maize cells as a biosensor for cellular redox changes triggered by genetic lesion of single ROS genes even under stress conditions, and suggest a potential application of roGFP1 in large-scale screening for maize mutants of ROS signaling involved in development and stress resistance. PMID:25173931

  20. Benthic Redox Conditions and Oceanographic Variability in the Upper Central Peruvian Margin since the Nineteenth Century Depicted from Benthic Foraminifera

    NASA Astrophysics Data System (ADS)

    Cardich, J.; Sifeddine, A.; Salvatecci, R.; Briceño, F. J., Sr.; Almeida, C.; Romero, D.; Gutierrez, D.

    2014-12-01

    Benthic foraminifera compose the dominant biota in the central Peruvian margin, which is impinged by an intense Oxygen Minimum Zone (OMZ). Here subsurface and benthic biogeochemical conditions are characterized by oxygen deficiency in the bottom waters, strong fluxes of settling organic matter and reducing conditions in the surface sediments. These processes interact among each other and are amplified or relaxed according to the variability of oceanic conditions at different spatial and temporal scales. Recent studies on living foraminiferal assemblages determined the association of species to a geochemical condition (in terms of redox and organic matter (OM)). Species such as Bolivina costata, Nonionella auris and Virgulinella fragilis were characteristic of sulphidic/labile OM-rich sediments, whereas Bolivina pacifica headed the assemblage representative of postoxia (no oxygen, non sulphidic)/preserved OM. The present study aims to reconstruct the decadal to multidecadal variation of benthic paleo-redox conditions for the last two centuries, based on laminated sedimentary records of benthic foraminiferal assemblages and redox-sensitive metals (Mo, Re, etc.) in the upper margin off Callao (12°S). Three major multidecadal periods were determined for the record: i) the mid to late nineteenth century, characterized by the occurrence of massive diatom-rich sedimentation events, development of bottom anoxia, and higher abundance of Bolivina costata and Nonionella auris; ii) the late nineteenth century to mid-twentieth century, featuring interdecadal variations of redox conditions; and iii) the late twentieth century until the early 2000's, in which redox-sensitive metal records exhibit a trend towards less reducing conditions, accompanied by higher relative abundances of postoxia foraminiferal species (e.g. Bolivina pacifica or Bolivina plicata). Remarkably, the first multidecadal period is associated with a higher ENSO activity, whereas the latest one is parallel to

  1. Ageing-induced changes in the redox status of peripheral motor nerves imply an effect on redox signalling rather than oxidative damage

    PubMed Central

    McDonagh, Brian; Scullion, Siobhan M.; Vasilaki, Aphrodite; Pollock, Natalie; McArdle, Anne; Jackson, Malcolm J.

    2016-01-01

    Ageing is associated with loss of skeletal muscle fibres, atrophy of the remaining fibres and weakness. These changes in muscle are accompanied by disruption of motor neurons and neuromuscular junctions although the direct relationship between the nerve and muscle degeneration is not understood. Oxidative changes have been implicated in the mechanisms leading to age-related loss of muscle mass and in degeneration of the central nervous system, but little is known about age-related changes in oxidation in specific peripheral nerves that supply muscles that are affected by ageing. We have therefore examined the sciatic nerve of old mice at an age when loss of tibialis anterior muscle mass and function is apparent. Sciatic nerve from old mice did not show a gross increase in oxidative damage, but electron paramagnetic resonance (EPR) studies indicated an increase in the activity of superoxide and/or peroxynitrite in the nerves of old mice at rest that was further exacerbated by electrical stimulation of the nerve to activate muscle contractions. Proteomic analyses indicated that specific redox-sensitive proteins are increased in content in the nerves of old mice that may reflect an adaptation to regulate the increased superoxide/peroxynitrite and maintain redox homoeostasis. Analysis of redox active cysteines showed some increase in reversible oxidation in specific proteins in nerves of old mice, but this was not universally seen across all redox-active cysteines. Detailed analysis of the redox-active cysteine in one protein in the nerve of old mice that is key to redox signalling (Peroxiredoxin 6, Cys 47) showed a minor increase in reversible oxidation that would be compatible with a change in its redox signalling function. In conclusion, the data presented indicate that sciatic nerve from old mice does not show a gross increase in oxidative damage similar to that seen in the TA and other muscles that it innervates. Our results indicate an adaptation to increased

  2. Ageing-induced changes in the redox status of peripheral motor nerves imply an effect on redox signalling rather than oxidative damage.

    PubMed

    McDonagh, Brian; Scullion, Siobhan M; Vasilaki, Aphrodite; Pollock, Natalie; McArdle, Anne; Jackson, Malcolm J

    2016-05-01

    Ageing is associated with loss of skeletal muscle fibres, atrophy of the remaining fibres and weakness. These changes in muscle are accompanied by disruption of motor neurons and neuromuscular junctions although the direct relationship between the nerve and muscle degeneration is not understood. Oxidative changes have been implicated in the mechanisms leading to age-related loss of muscle mass and in degeneration of the central nervous system, but little is known about age-related changes in oxidation in specific peripheral nerves that supply muscles that are affected by ageing. We have therefore examined the sciatic nerve of old mice at an age when loss of tibialis anterior muscle mass and function is apparent. Sciatic nerve from old mice did not show a gross increase in oxidative damage, but electron paramagnetic resonance (EPR) studies indicated an increase in the activity of superoxide and/or peroxynitrite in the nerves of old mice at rest that was further exacerbated by electrical stimulation of the nerve to activate muscle contractions. Proteomic analyses indicated that specific redox-sensitive proteins are increased in content in the nerves of old mice that may reflect an adaptation to regulate the increased superoxide/peroxynitrite and maintain redox homoeostasis. Analysis of redox active cysteines showed some increase in reversible oxidation in specific proteins in nerves of old mice, but this was not universally seen across all redox-active cysteines. Detailed analysis of the redox-active cysteine in one protein in the nerve of old mice that is key to redox signalling (Peroxiredoxin 6, Cys 47) showed a minor increase in reversible oxidation that would be compatible with a change in its redox signalling function. In conclusion, the data presented indicate that sciatic nerve from old mice does not show a gross increase in oxidative damage similar to that seen in the TA and other muscles that it innervates. Our results indicate an adaptation to increased

  3. Macroform and microform-induced change in redox-sensitive chemistries of river channel surface sediments

    NASA Astrophysics Data System (ADS)

    Byrne, P.; Zhang, H.; Heathwaite, A. L.; Binley, A.; Ullah, S.; Kaeser, D.; Heppell, C. M.; Lansdown, K.; Trimmer, M.

    2012-04-01

    In-stream geomorphological features such as riffle-pool sequences (macroforms) can produce steep hydraulic gradients which induce flow in and out of the riverbed - hyporheic exchange flow (HEF). The acceleration of flow over channel obstacles such as large cobbles and boulders (microforms) can create variation in surface-subsurface pressure gradients and generation of HEF. HEF in shallow surface sediments affect the transformation of redox-sensitive chemical forms and, therefore, the attenuation or release of nutrients in river systems. Here, we examine the relationship between stream geomorphological environment (microform and macroform) and concentration profiles of redox-sensitive species (nitrate, sulphate, iron, manganese) in shallow (15cm) subsurface sediments. In-situ passive samplers (diffusive equilibrium in thin films - DET) are used to obtain biogeochemical data from armoured environments at fine scale (cm) depth resolution where there is strong upwelling. The probes were deployed in a 50m reach of the River Eden, Cumbria, UK, during baseflow conditions. The experimental setup allowed for the assessment of differences in redox-sensitive chemistries between a riffle and pool environment and between smooth and rough bed surfaces in the pool. The passive sensing basis of the DET methodology provided a means for investigating how HEF systems generated at two different geomorphological scales influence the concentration and spatial patterns of redox-sensitive species. DET's capability of measuring at high spatial resolution allowed the extent of hyporheic mixing to be targeted, even though it is often limited to the top few centimetres of sediment.

  4. Role of biotransformation, sorption and mineralization of (14)C-labelled sulfamethoxazole under different redox conditions.

    PubMed

    Alvarino, T; Nastold, P; Suarez, S; Omil, F; Corvini, P F X; Bouju, H

    2016-01-15

    (14)C-sulfamethoxazole biotransformation, sorption and mineralization was studied with heterotrophic and autotrophic biomass under aerobic and anoxic conditions, as well as with anaerobic biomass. The (14)C-radiolabelled residues distribution in the solid, liquid and gas phases was closely monitored along a total incubation time of 190 h. Biotransformation was the main removal mechanism, mineralization and sorption remaining below 5% in all the cases, although the presence of a carbon source exerted a positive effect on the mineralization rate by the aerobic heterotrophic bacteria. In fact, an influence of the type of primary substrate and the redox potential was observed in all cases on the biotransformation and mineralization rates, since an enhancement of the removal rate was observed when an external carbon source was used as a primary substrate under aerobic conditions, while a negligible effect was observed under nitrifying conditions. In the liquid phases collected from all assays, up to three additional peaks corresponding to (14)C-radiolabelled residues were detected. The highest concentration was observed under anaerobic conditions, where two radioactive metabolites were detected representing each around 15% of the total applied radioactivity after 180 h incubation. One of the metabolites detected under anoxic and anaerobic conditions, is probably resulting from ring cleavage of the isoxazole ring. PMID:26546766

  5. Chromium Redox Equilibria in Fluids and Minerals under Hydrothermal and Subduction-zone Conditions

    NASA Astrophysics Data System (ADS)

    Hao, J.; Sverjensky, D. A.; Hazen, R. M.

    2015-12-01

    Chromium mobility and isotopic variations have been reported from a variety of high-temperature environments from hydrothermal to diamond-forming at elevated temperatures and pressures [1, 2, 3]. In addition, experiments under upper mantle conditions reported Cr-rich fluids in equilibrium with chromium oxide (Cr3+2O3) [4]. These studies suggest the need for theoretical models of the aqueous speciation of chromium in fluids and the stabilities of Cr minerals under deep crustal and upper mantle conditions. We estimated the thermodynamic properties of aqueous Cr2+, Cr3+, HCrO4-, CrO42-, and Cr2O72- using published data [5, 6] and the Deep Earth Water Model [7] to predict the different oxidation states of aqueous Cr to 1,000 °C and 5.0 GPa. We show that Cr(II) becomes the major redox state of Cr in hydrothermal fluids at 100 to 400 °C, with log fO2,g at magnetite/hematite over a wide range of pH values. In subduction zones, with log fO2,g at QFM to QFM - 2, a range of Cr redox states (II, III, and VI) may exist at 600 °C and 5 GPa depending on the pH. However, at higher temperatures (1000 °C), aqueous Cr(III) disappears and Cr(II) is favored relative to Cr(VI), again depending on the pH. Our predicted stability of Cr(II) in aqueous fluids at high temperatures suggests new mechanisms for redox/pH dependent Cr isotopic fractionation. We also estimated the thermodynamic properties of Cr(II)- and Cr(III)-garnets with the Sverjensky-Molling equation [8] to investigate the stability of Cr-garnet-fluid equilibria at elevated pressures and temperatures. References: [1] Schoenberg et al., 2008, Chem Geol 249, 294-306; [2] Farkaš et al., 2013, GCA 123, 74-92; [3] Stachel & Harris, 2008, Ore Geol. Rev, 34, 5-32; [4] Klein-BenDavid et al., 2011, Lithos 125, 122-130; [5] Ball & Nordstrom, 1998, J Chem Eng Data 43, 895-918; [6] Johnson & Nelson, 2012, Inorg Chem 51, 6116-6128; [7] Sverjensky et al. 2014, GCA 129, 125-145; [8] Sverjensky & Molling, 1992, Nature 356, 231-234.

  6. A system for conducting igneous petrology experiments under controlled redox conditions in reduced gravity

    NASA Technical Reports Server (NTRS)

    Williams, R. J.

    1986-01-01

    The Space Shuttle and the planned Space Station will permit experimentation under conditions of reduced gravitational acceleration offering experimental petrologists the opportunity to study crystal growth, element distribution, and phase chemistry. In particular the confounding effects of macro and micro scale buoyancy-induced convection and crystal settling or floatation can be greatly reduced over those observed in experiments in the terrestrial laboratory. Also, for experiments in which detailed replication of the environment is important, the access to reduced gravity will permit a more complete simulation of processes that may have occurred on asteroids or in free space. A technique that was developed to control, measure, and manipulate oxygen fugacites with small quantities of gas which are recirculated over the sample is described. This system should be adaptable to reduced gravity space experiments requiring redox control. Experiments done conventionally and those done using this technique yield identical results done in a 1-g field.

  7. A system for conducting igneous petrology experiments under controlled redox conditions in reduced gravity

    NASA Technical Reports Server (NTRS)

    Williams, Richard J.

    1987-01-01

    The Space Shuttle and the planned Space Station will permit experimentation under conditions of reduced gravitational acceleration offering experimental petrologists the opportunity to study crystal growth, element distribution, and phase chemistry. In particular the confounding effects of macro and micro scale buoyancy-induced convection and crystal settling or flotation can be greatly reduced over those observed in experiments in the terrestrial laboratory. Also, for experiments in which detailed replication of the environment is important, the access to reduced gravity will permit a more complete simulation of processes that may have occurred on asteroids or in free space. A technique that was developed to control, measure, and manipulate oxygen fugacities with small quantities of gas which are recirculated over the sample. This system could be adaptable to reduced gravity space experiments requiring redox control.

  8. Modeling microbial degradation of propylene glycol: electron acceptors and their related redox conditions

    NASA Astrophysics Data System (ADS)

    Dathe, Annette; Fernandez, Perrine M.; Bloem, Esther; Meeussen, Johannes C. L.; French, Helen K.

    2014-05-01

    De-icing chemicals are applied in large amounts at airports during winter conditions to keep the runways and aircrafts ice-free. The commonly used propylene glycol (PG) is easily degradable by local microbial communities, but anoxic zones develop and soluble Fe+2 and Mn+2 ions can reach the groundwater. To enhance microbial induced remediation and reduce the release of iron and manganese, it was proposed to add NO3- together with PG. However, experiments conducted in the unsaturated zone at Gardermoen airport, Norway, revealed that manganese and iron were preferred over NO3- as electron acceptor [1]. The objectives of this study are to quantify mechanisms which control the order of reduction processes in an unsaturated sandy soil, and to test whether measured redox potentials can help to determine underlying biogeochemical reactions. We are modelling the microbial degradation of PG using Monod kinetics described for the chemical equilibrium tool ORCHESTRA [2], following an approach of [1]. The model is calibrated against gas measurements of CO2, NO2 and N2 released from batch experiments performed under controlled conditions. Fe+2 and Mn+2 were measured for the start and end of the experiment, as well as bulk resistivity, pH and electrical conductivity. With the calibrated model we are working towards a tool to quantify microbial induced redox reactions under different soil water saturations to account for seasonal water fluxes especially during snowmelt. [1] Schotanus, D., Meeussen, J.C.L., Lissner, H., van der Ploeg, M.J., Wehrer, M., Totsche, K.U., van der Zee, S.E.A.T.M., 2013. Transport and degradation of propylene glycol in the vadose zone: model development and sensitivity analysis. Environ Sci Pollut Res Int. [2] Meeussen, J.C.L., 2003. ORCHESTRA: An Object-Oriented Framework for Implementing Chemical Equilibrium Models. Environ. Sci. Technol. 37, 1175-1182.

  9. Reconstructing the redox conditions of Paleoproterozoic oceans: Insights from the Zaonega Formation

    NASA Astrophysics Data System (ADS)

    Patel, Neel; Zerkle, Aubrey; Izon, Gareth; Romashkin, Alexander; Rychanchik, Dmtriy; Upraus, Kärt; Kirsimäe, Kalle; Wing, Boswell; Lepland, Aivo

    2015-04-01

    The Paleoproterozoic is marked by profound changes in global tectonics, climate and biogeochemical cycling of redox sensitive elements. Determining the redox state of marine environments at this point in Earth's history is fundamental in understanding the connections between the geosphere and biosphere, including possible microbially-assisted phosphogenesis. One hypothesis suggests that oxidative weathering following Earth's first significant rise in atmospheric oxygen, resulted in an increased supply of sulfate and phosphate to the oceans, culminating in the first significant phosphorite deposits some 300-400 Ma later (Lepland et al., 2013). Thus Paleoproterozoic ocean structure has been envisaged as stratified, through mildly oxygenated shallow water and anoxic deep water, with temporally and spatially variable phases of euxinia possibly linked to transient changes in the size of the seawater sulfate reservoir (Scott et al., 2014). New cores obtained from the upper part of the 2 Ga Zaonega Formation in the Onega Basin of Karelia, NW Russia, have recovered a variety of organic-rich mudstones and carbonate rocks, containing several discrete mm-cm scale P-rich beds that may represent seep or hydrothermally-influenced depositional settings (Lepland et al., 2013). Here we present new Fe-speciation data and pyrite derived S-isotope data spanning one of these new cores in order to: i) evaluate the redox state of the water column, determining the extent of water column euxinia, and ii) assess the potential influence of S-cycling on phosphogenesis. Preliminary Fe extractions show that total Fe is broadly dictated by lithology, but generally lower in samples where the P-rich intervals occur, possibly supporting extensive sulfate reduction and the formation of a euxinic water column. Further S-isotope analyses on associated pyrites will determine the extent to which additional biogeochemical S-cycling (e.g., sulfide oxidation) could also have contributed to the P

  10. Stability of uranium incorporated into Fe(hydr)oxides under fluctuating redox conditions

    SciTech Connect

    Stewart, B.D.; Nico, P.S.; Fendorf, S.

    2009-04-01

    Reaction pathways resulting in uranium bearing solids that are stable (i.e., having limited solubility) under both aerobic and anaerobic conditions will limit dissolved concentrations and migration of this toxin. Here we examine the sorption mechanism and propensity for release of uranium reacted with Fe (hydr)oxides under cyclic oxidizing and reducing conditions. Upon reaction of ferrihydrite with Fe(II) under conditions where aqueous Ca-UO{sub 2}-CO{sub 3} species predominate (3 mM Ca and 3.8 mM CO{sub 3}-total), dissolved uranium concentrations decrease from 0.16 mM to below detection limit (BDL) after 5 to 15 d, depending on the Fe(II) concentration. In systems undergoing 3 successive redox cycles (15 d of reduction followed by 5 d of oxidation) and a pulsed decrease to 0.15 mM CO{sub 3}-total, dissolved uranium concentrations varied depending on the Fe(II) concentration during the initial and subsequent reduction phases - U concentrations resulting during the oxic 'rebound' varied inversely with the Fe(II) concentration during the reduction cycle. Uranium removed from solution remains in the oxidized form and is found both adsorbed on and incorporated into the structure of newly formed goethite and magnetite. Our 15 results reveal that the fate of uranium is dependent on anaerobic/aerobic conditions, aqueous uranium speciation, and the fate of iron.

  11. Sedimentary Trace Metal-Organic Interactions as Proxies for Oceanic Redox Conditions

    NASA Astrophysics Data System (ADS)

    Cruse, A. M.; Lyons, T. W.; Hannigan, R.

    2007-12-01

    Knowledge of trace-metal partitioning in oceanic sediments (e.g., Fe, Mo, U, Zn) are requisite to the construction of accurate models of geochemical cycling in modern and ancient waters. Factors such as oxygen penetration depth and bottom-water redox; sedimentation rate; and supply of reactants, such as dissolved sulfide, are known to affect metal sequestration in and remobilization from coastal sediments. In addition to these factors, the flux of organic carbon (OC) and the composition of this carbon are also a key in the sequestration of these metals. Currently, however, there is an absence of quantitative information on the mass balance of metals fixed in coastal sediments through direct interactions with OC, how OC remineralization affects this mass balance, and the specific nature of the metal-OC relationship. To address these issues, we have undertaken a field-based study to test the hypothesis that porewater redox conditions are recorded in the concentrations of trace metals bound in the sedimentary OC pool. We have collected sediments from several modern anoxic/euxinic basins: the central Black Sea, the Orca Basin, the Cariaco Basin, and Effingham Inlet (Vancouver Island). These environments vary in terms of dissolved sulfide concentrations and sedimentary iron sulfide geochemistry. Additionally, the sediments are characterized by a range in OC concentrations, and proximity to terrestrial sources. Extractable organic carbon was characterized with gas chromatography, and OC-bound metals are quantified using high-performance liquid chromatography- inductively coupled mass spectrometry. The preliminary results suggest that variations in the ratios of aromatic to saturate hydrocarbons may control the speciation of metals in the organic carbon pool. Bottomwater redox may be one factor controlling this relationship, although it is currently unclear if this is due to variations in metal speciation or the direct involvement of S in the OC-metal reaction mechanism

  12. Amendment of biochar reduces the release of toxic elements under dynamic redox conditions in a contaminated floodplain soil.

    PubMed

    Rinklebe, Jörg; Shaheen, Sabry M; Frohne, Tina

    2016-01-01

    Biochar (BC) can be used to remediate soils contaminated with potential toxic elements (PTEs). However, the efficiency of BC to immobilize PTEs in highly contaminated floodplain soils under dynamic redox conditions has not been studied up to date. Thus, we have (i) quantified the impact of pre-definite redox conditions on the release dynamics of dissolved aluminum (Al), arsenic (As), cadmium (Cd), copper (Cu), nickel (Ni), and zinc (Zn) in a highly contaminated soil (CS) (non-treated) and in the same soil treated with 10 g kg(-1) biochar based material (CS+BC), and (ii) assessed the efficacy of the material to reduce the concentrations of PTEs in soil solution under dynamic redox conditions using an automated biogeochemical microcosm apparatus. The impact of redox potential (EH), pH, dissolved organic carbon (DOC), dissolved inorganic carbon (DIC), iron (Fe), manganese (Mn), and sulfate (SO4(2-)) on dynamics of PTEs was also determined. The EH was lowered to +68 mV and afterwards increased stepwise to +535 mV. Significant negative correlation between EH and pH in CS and CS+BC was detected. The systematic increase of EH along with decrease of pH favors the mobilization of PTEs in CS and CS+BC. The material addition seems to have little effect on redox processes because pattern of EH/pH and release dynamics of PTEs was basically similar in CS and CS+BC. However, concentrations of dissolved PTEs were considerably lower in CS+BC than in CS which demonstrates that BC is able to decrease concentrations of dissolved PTEs even under dynamic redox conditions. PMID:25900116

  13. Redox conditions and the efficiency of chlorinated ethene biodegradation: Laboratory studies

    USGS Publications Warehouse

    Bradley, P.M.; Chapelle, F.H.

    2000-01-01

    The potential for biodegradation of highly reduced groundwater contaminants is greatest under aerobic conditions and least under CO2-reducing (methanogenic) conditions. Laboratory studies conducted using [1,2-14C] vinyl chloride (VC) indicate the same pattern applies to the anaerobic oxidation of relatively reduced chloroethylenes. Recent studies, showing that CH4 can be a significant product of microbial degradation of VC under methanogenic conditions, clarified mechanisms underlying anaerobic VC mineralization and emphasized the redox dependence of this process. A microcosm study conducted with stream bed sediments demonstrated rapid degradation of [1,2-14C] VC and simultaneous production of 14CO2 and 14CH4. The results of acetate mineralization studies indicated that these sediments contained active acetotrophic methanogens. VC degradation involved an initial transformation to acetate via oxidative acetogenesis followed by acetotrophic methanogenesis to yield CO2 and CH4 as final products. Based on these recent results, a conceptual model for anaerobic microbial degradation of VC to non-chlorinated products can be proposed.

  14. Arsenic Speciation in Bituminous Coal Fly Ash and Transformations in Response to Redox Conditions.

    PubMed

    Deonarine, Amrika; Kolker, Allan; Foster, Andrea L; Doughten, Michael W; Holland, James T; Bailoo, Jeremy D

    2016-06-01

    The risk of the mobilization of coal ash into the environment has highlighted the need for the assessment of the environmental behavior of coal ash, particularly with respect to toxic trace elements such as arsenic (As). Here, we examined As speciation in coal fly ash samples and transformations in response to aquatic redox conditions. X-ray absorption spectroscopy indicated that 92-97% of total As occurred as As(V), with the remainder present as As(III). Major As-bearing hosts in unamended ashes were glass, iron (oxyhydr)oxides, and calcium arsenate. Oxic leaching resulted in immediate As mobilization to the aqueous phase, reprecipitation of As-iron ferrihydrite, and As adsorption to mineral surfaces. Under anoxic conditions, the (reductive) dissolution of As-bearing phases such as iron ferrihydrite resulted in increased dissolved As compared to oxic conditions and reprecipitation of iron arsenate. Overall, As in coal ash is not environmentally stable and can participate in local biogeochemical cycles. PMID:27186791

  15. Effects of temperature and redox conditions on degradation of chlorinated phenols in freshwater sediments

    SciTech Connect

    Rogers, J.E.; Kohring, G.W.; Wiegel, J.

    1988-11-01

    The effect of temperature and redox conditions on the anaerobic degradation of 2,4-dichlorophenol (2,4-DCP) was investigated in anaerobic sediment slurries, prepared from local freshwater pond sediments. Under methanogenic conditions, 2,4-DCP dechlorination occurred in the temperature range between 5 and 50 C. Although dechlorination was not observed above 50 C, anaerobic bacterial activity was indicated by methane formation up to 60 C. In sediment samples from two sites and at all temperatures from 5 to 50 C, 2,4-DCP was transformed to 4-chlorophenol (4-CP). The 4-CP intermediate was subsequently degraded after an extended lag period. Adaptation periods for 2,4-DCP transformation decreased between 5 and 25 C, were essentially constant between 25 and 35 C, and increased between 35 and 40 C. Degradation rates increased exponentially between 15 and 30 C, had a second peak at 35 C, and decreased to about 5% of the peak activity by 40 C. In one sediment sample, an increase in degradation rates was observed following the minimum at 40 C, suggesting that at least two different organisms were involved in the 2,4-DCP dechlorination. Storage of the original sediment slurries for 2 months at 12 C resulted in increased adaptation times but did not affect the degradation rates.

  16. Selective detection of the structural changes upon photoreactions of several redox cofactors in photosystem II by means of light-induced ATR-FTIR difference spectroscopy

    NASA Astrophysics Data System (ADS)

    Okubo, Tatsunori; Noguchi, Takumi

    2007-04-01

    Attenuated total reflection Fourier transform infrared (ATR-FTIR) spectroscopy was applied for the first time to detect the structural changes upon photoreactions of redox cofactors in photosystem II (PSII). The PSII-enriched membranes from spinach were adsorbed on the surface of a silicon prism, and FTIR measurements of various redox cofactors were performed for the same sample but under different conditions by exchanging buffers in a flow cell. Light-induced FTIR difference spectra upon redox reactions of the oxygen-evolving Mn cluster, the primary quinone electron acceptor Q A, the redox-active tyrosine Y D, the primary electron acceptor pheophytin, and the primary electron donor chlorophyll P680 were successively recorded in buffers including different redox reagents and inhibitors. All of these cofactors remained active in the PSII membranes on the silicon surface, and the resultant spectra were basically identical to those previously recorded by the conventional transmission method. These ATR-FTIR measurements enable accurate comparison between reactions of different active sites in a single PSII sample. The present results demonstrated that the ATR-FTIR spectroscopy is a useful technique for investigation of the reaction mechanism of PSII.

  17. Spatio-temporal changes in glutathione and thioredoxin redox couples during ionizing radiation-induced oxidative stress regulate tumor radio-resistance.

    PubMed

    Patwardhan, R S; Sharma, D; Checker, R; Thoh, M; Sandur, S K

    2015-10-01

    Ionizing radiation (IR)-induced oxidative stress in tumor cells is effectively managed by constitutive and inducible antioxidant defense systems. This study was initiated to understand the relative contribution of different redox regulatory systems in determining the tumor radio-resistance. In this study, human T-cell lymphoma (Jurkat) cells were exposed to IR (4 Gy) and monitored for the spatio-temporal changes in cellular redox regulatory parameters. We monitored the changes in the levels of reactive oxygen species (ROS) (total, mitochondrial, primary, and secondary), thiols (total, surface, and intracellular), GSH/GSSG ratio, antioxidant enzyme activity viz. thioredoxin (Trx), Trx reductase (TrxR), glutathione peroxidase, and glutathione reductase with respect to time. We have also measured protein glutathionylation. We observed that tumor cells mount a biphasic response after IR exposure which can be divided into early (0-6 h) and late (16-48 h) responses in terms of changes in cellular redox parameters. During early response, constitutively active GSH and Trx systems respond to restore cellular redox balance to pre-exposure levels and help in activation of redox-sensitive transcription factor Nrf-2. During late response, increase in the levels of antioxidants GSH and Trx rescue cells against IR-mediated damage. We observed that disruption of either glutathione or thioredoxin metabolism led to partial impairment of ability of cells to survive against IR-induced damage. But simultaneous disruption of both the pathways significantly increased radio sensitivity of Jurkat cells. This highlighted the importance of these two antioxidant pathways in regulating redox homeostasis under conditions of IR-induced oxidative stress. PMID:26021764

  18. Characterizing Redox Conditions in Oxygen-deficient Waters Off Peru During the 2013 US GEOTRACES Zonal Transect

    NASA Astrophysics Data System (ADS)

    Cutter, G. A.; Nielsdottir, M.

    2014-12-01

    The oxygen-deficient zone that extends from coastal Peru well into the tropical Pacific Ocean has been described as "suboxic," but recent measurements of sulfate reduction suggest it may have some anoxic characteristics (e.g., free sulfide). The redox poise of suboxia strongly affects the solubility/stability of a wide variety of trace elements and therefore their vertical and horizontal transport. The problem is that suboxic is not chemically well defined, but certainly represents a very wide range of redox conditions (pE of ca. 10 to -2). During the 2013 US GEOTRACES Pacific cruise (International GEOTRACES section GP16) we determined a suite of redox couples to help define the redox poise in the water column: oxygen(/water), iodate/iodide, nitrate/nitrite, selenate/elemental Se, arsenate/arsenite, and sulfate/hydrogen sulfide. Using the RV Thomas Thompson we occupied a total of 11 stations along 12° S from coastal Peru to 94° W to sample the oxygen deficient waters using a conventional CTD/rosette and the trace metal-clean US GEOTRACES CTD/carousel. Determinations of all the redox tracers were made on board ship except for selenium. On the Peru shelf, oxygen concentrations were less than 10 μM from 30m to the bottom, while farther offshore the depth of this oxygen minimum was 700 m thick starting at ca. 80 m depth; the layer thickness steadily decreased moving west. In spite of the low oxygen conditions, nitrate and iodate were still detectable, while their corresponding reduced species had maxima in the low O2 waters. Dissolved hydrogen sulfide was below the detection limit of 70 pM, and no evidence of As(V) reduction was found; selenium speciation has yet to be determined. The lack of detectable dissolved hydrogen sulfide shows the redox conditions are certainly not anoxic, and incomplete iodate and nitrate reduction suggest the redox environment is more oxidizing than previously reported. The apparent temporal and spatial variability of the redox poise will

  19. Physical Training Status Determines Oxidative Stress and Redox Changes in Response to an Acute Aerobic Exercise.

    PubMed

    Seifi-Skishahr, Farnaz; Damirchi, Arsalan; Farjaminezhad, Manoochehr; Babaei, Parvin

    2016-01-01

    Objective. To assess the influence of different physical training status on exercise-induced oxidative stress and changes in cellular redox state. Methods. Thirty male subjects participated in this study and were assigned as well-trained (WT), moderately trained (MT), and untrained (UT) groups. The levels of cortisol, creatine kinase, plasma reduced glutathione to oxidized glutathione (GSH/GSSG), cysteine/cystine (Cys/CySS), and GSH/GSSG ratio in red blood cells (RBCs) were measured immediately and 10 and 30 min after exercise. Results. Following the exercise, plasma GSH/GSSG (p = 0.001) and Cys/CySS (p = 0.005) were significantly reduced in all groups. Reduction in plasma GSH/GSSG ratio in all groups induced a transient shift in redox balance towards a more oxidizing environment without difference between groups (p = 0.860), while RBCs GSH/GSSG showed significant reduction (p = 0.003) and elevation (p = 0.007) in UT and MT groups, respectively. The highest level of RBCs GSH/GSSG ratio was recorded in MT group, and the lowest one was recorded in the WT group. Conclusion. Long term regular exercise training with moderate intensity shifts redox balance towards more reducing environment, versus intensive exercise training leads to more oxidizing environment and consequently development of related diseases. PMID:27064342

  20. Physical Training Status Determines Oxidative Stress and Redox Changes in Response to an Acute Aerobic Exercise

    PubMed Central

    Damirchi, Arsalan; Farjaminezhad, Manoochehr

    2016-01-01

    Objective. To assess the influence of different physical training status on exercise-induced oxidative stress and changes in cellular redox state. Methods. Thirty male subjects participated in this study and were assigned as well-trained (WT), moderately trained (MT), and untrained (UT) groups. The levels of cortisol, creatine kinase, plasma reduced glutathione to oxidized glutathione (GSH/GSSG), cysteine/cystine (Cys/CySS), and GSH/GSSG ratio in red blood cells (RBCs) were measured immediately and 10 and 30 min after exercise. Results. Following the exercise, plasma GSH/GSSG (p = 0.001) and Cys/CySS (p = 0.005) were significantly reduced in all groups. Reduction in plasma GSH/GSSG ratio in all groups induced a transient shift in redox balance towards a more oxidizing environment without difference between groups (p = 0.860), while RBCs GSH/GSSG showed significant reduction (p = 0.003) and elevation (p = 0.007) in UT and MT groups, respectively. The highest level of RBCs GSH/GSSG ratio was recorded in MT group, and the lowest one was recorded in the WT group. Conclusion. Long term regular exercise training with moderate intensity shifts redox balance towards more reducing environment, versus intensive exercise training leads to more oxidizing environment and consequently development of related diseases. PMID:27064342

  1. [Effect of sulfur on the species of Fe and As under redox condition in paddy soil].

    PubMed

    Tang, Bing-Pei; Yang, Shi-Jie; Wang, Dai-Zhang; Rao, Wei; Zhang, Ya-Nan; Wang, Dan; Zhu, Yun-Ji

    2014-10-01

    Redox conditions of the polluted paddy soil with exogenous As were simulated by redox reaction apparatus after flowing N2 and O2 applied with different forms of inorganic sulfur(CK-S0, elemental sulfur-S1 and sulfate-S2). Results showed that redox potential (Eh) was about -100 - -200 mV and the pH 7.0-8.0 and the pe + pH 4-7 in soil solution when flowed N2, and Eh about 200 mV and the pH 6.5-7.5 and pe + pH 9-12 when continuously flowed O2. Concentrations of the dissolved Fe in soil solution were in 1.2-1.6 mg x L(-1) either flowed N2 or O2, and the order of Fe concentrations was AsS0 treatment > AsS1 treatment > AsS2 treatment. Amounts of soil Fe oxide by HCl extraction from different treatments were 5 g · kg(-1) lower than the original soil [(21.4 ± 0.3) g · kg(-1)] when flowed N2, and it was in favor of the transformation of crystal Fe into amorphous iron and Fe2+. Activity of Fe oxides from different treatments increased comparing to that of the original soil (46. 8%), and the order of activity of Fe oxides was AsS2 treatment (49.4%) < AsS1 treatment (60%). Fe2+ in solution and FeS were oxidized into Fe3+, and hydrolysis of Fe3+ was produced into Fe(OH)3 precipitation when flowed O2. It increased the contents of acid-soluble and crystal Fe oxide, and the order of activity of Fe oxides was AsS1 (41.2%) treatment > AsS2 (36.1%) treatment. Concentrations of As in soil solution were in the order of AsS0 [(1.13 ± 0.04) mg · L(-1)] > AsS1 [(0.89 ± 0.01) mg L(- 1)] > AsS2 [ (0.77 ± 0.04 )mg · L(-1)] when flowed N2 and was AsS1 [(0.77 ± 0.01) mg · L(-1)] > AsS0 [(0.20 ± 0.09 ) mg · L(-1)] > AsS2 [(0.09 ± 0.01) mg · L(-1)] when flowed O2. The proportions of arsenic fractions followed the order of the residual phases (34.9%-41.4%) ≈ specifically-sorbed (37.4%-39.5%) > well-crystallized hydrous oxides of Fe/Mn (23.3%-25.6%) > non-specifically sorbed (2.4%-3.3%) > amorphous hydrous oxides of Fe/Mn (0.5%-0.8%) when flowed N2, and was the residual phases (30

  2. Decomposition of jellyfish carrion in situ: Short-term impacts on infauna, benthic nutrient fluxes and sediment redox conditions.

    PubMed

    Chelsky, Ariella; Pitt, Kylie A; Ferguson, Angus J P; Bennett, William W; Teasdale, Peter R; Welsh, David T

    2016-10-01

    Jellyfish often form blooms that persist for weeks to months before they collapse en masse, resulting in the sudden release of large amounts of organic matter to the environment. This study investigated the biogeochemical and ecological effects of the decomposition of jellyfish in a shallow coastal lagoon in New South Wales, Australia. Catostylus mosaicus carrion was added to the surface of shallow sub-tidal sediments and biogeochemical parameters and macrofaunal abundance immediately below the jellyfish carrion were measured over three days. Sediment plots without jellyfish served as controls. Sediment oxygen demand and carbon and nitrogen efflux increased by up to 60-fold in the jellyfish plots, compared to control plots, and dissolved organic nutrient fluxes were more sustained than in previous studies due to the use of fresh rather than frozen biomass. The decomposing jellyfish progressively altered sediment redox conditions, indicated by an increase in porewater iron (II) and sulfide concentrations measured by high-resolution in situ diffusive samplers. Abundance of some macrofaunal taxa in the jellyfish plots decreased relative to controls, however, the abundance of a carnivorous gastropod, which was presumably feeding on the carrion, increased in the jellyfish plots. While jellyfish carrion may be a food source for some macrofauna, low oxygen conditions coupled with the accumulation of toxic dissolved sulfides in the near-surface sediments may explain the overall change in the macroinfaunal community. PMID:27285534

  3. Characterizing redox conditions and monitoring attenuation of selected pharmaceuticals during artificial recharge through a reactive layer.

    PubMed

    Valhondo, Cristina; Carrera, Jesús; Ayora, Carlos; Tubau, Isabel; Martinez-Landa, Lurdes; Nödler, Karsten; Licha, Tobias

    2015-04-15

    A permeable reactive layer was installed at the floor of an infiltration basin. The reactive layer comprised 1) vegetable compost to provide a sorption surface for neutral organic compounds and to release easily degradable organic matter, thus generating a sequence of redox states, and 2) minor amounts of clay and iron oxide to increase sorption of cationic and anionic species, respectively. Field application of this design was successful in generating denitrification, and manganese-, and iron-reducing conditions beneath the basin. This, together with the increase in types of sorption sites, may explain the improved removal of three of the four selected pharmaceuticals compared with their behavior prior to installation of the layer. After installation of the reactive layer, atenolol concentrations were below the detection limits in the vadose zone. Moreover, concentrations of gemfibrozil and cetirizine were reduced to 20% and 40% of their initial concentrations, respectively, after 200 h of residence time. In contrast, prior to installation of the reactive layer, the concentrations of these three pharmaceuticals in both the vadose zone and the aquifer were more than 60% of the initial concentration. Carbamazepine exhibited recalcitrant behavior both prior to and after the reactive barrier installation. PMID:25625636

  4. Redox conditions and trace metal cycling in coastal sediments from the maritime Antarctic

    NASA Astrophysics Data System (ADS)

    Monien, Patrick; Lettmann, Karsten Alexander; Monien, Donata; Asendorf, Sanja; Wölfl, Anne-Cathrin; Lim, Chai Heng; Thal, Janis; Schnetger, Bernhard; Brumsack, Hans-Jürgen

    2014-09-01

    Redox-sensitive trace metals (Mn, Fe, U, Mo, Re), nutrients and terminal metabolic products (NO3-, NH4+, PO43-, total alkalinity) were investigated for the first time in pore waters of Antarctic coastal sediments. The results of this study reveal a high spatial variability in redox conditions in surface sediments from Potter Cove, King George Island, western Antarctic Peninsula. Particularly in the shallower areas of the bay the significant correlation between sulphate depletion and total alkalinity, the inorganic product of terminal metabolism, indicates sulphate reduction to be the major pathway of organic matter mineralisation. In contrast, dissimilatory metal oxide reduction seems to be prevailing in the newly ice-free areas and the deeper troughs, where concentrations of dissolved iron of up to 700 μM were found. We suggest a combination of several factors to be responsible for the domination of metal oxide reduction over sulphate reduction in these areas. These include the increased accumulation of fine-grained material with high amounts of reducible metal oxides, a reduced availability of metabolisable organic matter and an enhanced physical and biological disturbance by bottom water currents, ice scouring and burrowing organisms. Based on modelled iron fluxes we calculate the contribution of the Antarctic shelf to the pool of potentially bioavailable iron (Feb) to be 6.9 × 103 to 790 × 103 t yr-1. Consequently, these shelf sediments would provide an Feb flux of 0.35-39.5 mg m-2 yr-1 (median: 3.8 mg m-2 yr-1) to the Southern Ocean. This contribution is in the same order of magnitude as the flux provided by icebergs and significantly higher than the input by aeolian dust. For this reason suboxic shelf sediments form a key source of iron for the high nutrient-low chlorophyll (HNLC) areas of the Southern Ocean. This source may become even more important in the future due to rising temperatures at the WAP accompanied by enhanced glacier retreat and the

  5. Redox-dependent structure change and hyperfine nuclear magnetic resonance shifts in cytochrome c

    SciTech Connect

    Feng, Yiquing; Roder, H.; Englander, S.W. )

    1990-04-10

    Proton nuclear magnetic resonance assignments for reduced and oxidized equine cytochrome c show that many individual protons exhibit different chemical shifts in the two protein forms, reflecting diamagnetic shift effects due to structure change, and in addition contact and pseudocontact shifts that occur only in the paramagnetic oxidized form. To evaluate the chemical shift differences for structure change, the authors removed the pseudocontact shift contribution by a calculation based on knowledge of the electron spin g tensor. The g-tensor calculation, when repeated using only 12 available C{sub {alpha}}H proton resonances for cytochrom c from tuna, proved to be remarkably stable. The derived g tensor was then used together with spatial coordinates for the oxidized form to calculate the pseudocontact shift contribution to proton resonances at 400 identifiable sites throughout the protein, so that the redox-dependent chemical shift discrepancy, could be evaluated. Large residual changes in chemical shift define the Fermi contact shifts, where are found as expected to be limited to the immediate covalent structure of the heme and its ligands and to be asymmetrically distributed over the heme. The chemical shift discrepancies observed appear in the main to reflect structure-dependent diamagnetic shifts rather than hyperfine effects due to displacements in the pseudocontact shift field. Although 51 protons in 29 different residues exhibit significant chemical shift changes, the general impressions one of small structural adjustments to redox-dependent strain rather than sizeable structural displacements or rearrangements.

  6. Predicting Redox Conditions in Groundwater Using Statistical Techniques: Implications for Nitrate Transport in Groundwater and Streams

    NASA Astrophysics Data System (ADS)

    Tesoriero, A. J.; Terziotti, S.

    2014-12-01

    Nitrate trends in streams often do not match expectations based on recent nitrogen source loadings to the land surface. Groundwater discharge with long travel times has been suggested as the likely cause for these observations. The fate of nitrate in groundwater depends to a large extent on the occurrence of denitrification along flow paths. Because denitrification in groundwater is inhibited when dissolved oxygen (DO) concentrations are high, defining the oxic-suboxic interface has been critical in determining pathways for nitrate transport in groundwater and to streams at the local scale. Predicting redox conditions on a regional scale is complicated by the spatial variability of reaction rates. In this study, logistic regression and boosted classification tree analysis were used to predict the probability of oxic water in groundwater in the Chesapeake Bay watershed. The probability of oxic water (DO > 2 mg/L) was predicted by relating DO concentrations in over 3,000 groundwater samples to indicators of residence time and/or electron donor availability. Variables that describe position in the flow system (e.g., depth to top of the open interval), soil drainage and surficial geology were the most important predictors of oxic water. Logistic regression and boosted classification tree analysis correctly predicted the presence or absence of oxic conditions in over 75 % of the samples in both training and validation data sets. Predictions of the percentages of oxic wells in deciles of risk were very accurate (r2>0.9) in both the training and validation data sets. Depth to the bottom of the oxic layer was predicted and is being used to estimate the effect that groundwater denitrification has on stream nitrate concentrations and the time lag between the application of nitrogen at the land surface and its effect on streams.

  7. [Hygiene communication - conditions for change.

    PubMed

    Kjærbeck, Susanne; Petersen, Helle

    2014-06-01

    The article focuses on strengths and weaknesses of the local hygiene communication in a hospital ward. Efficient change communication consists of central and local communication activities. The hygiene coordinator is an important local "change agent", but in practice the role is difficult. The communicative interaction between the central infection control organization and a specific ward as well as between the department management and the hygiene coordinator should be strengthened in order to create change in staff behaviour. PMID:25352079

  8. Evaluation of heart tissue viability under redox-magnetohydrodynamics conditions: toward fine-tuning flow in biological microfluidics applications.

    PubMed

    Cheah, Lih Tyng; Fritsch, Ingrid; Haswell, Stephen J; Greenman, John

    2012-07-01

    A microfluidic system containing a chamber for heart tissue biopsies, perfused with Krebs-Henseleit buffer containing glucose and antibiotic (KHGB) using peristaltic pumps and continuously stimulated, was used to evaluate tissue viability under redox-magnetohydrodynamics (redox-MHD) conditions. Redox-MHD possesses unique capabilities to control fluid flow using ionic current from oxidation and reduction processes at electrodes in a magnetic field, making it attractive to fine-tune fluid flow around tissues for "tissue-on-a-chip" applications. The manuscript describes a parallel setup to study two tissue samples simultaneously, and 6-min static incubation with Triton X100. Tissue viability was subsequently determined by assaying perfusate for lactate dehydrogenase (LDH) activity, where LDH serves as an injury marker. Incubation with KHGB containing 5 mM hexaammineruthenium(III) (ruhex) redox species with and without a pair of NdFeB magnets (∼ 0.39 T, placed parallel to the chamber) exhibited no additional tissue insult. MHD fluid flow, viewed by tracking microbeads with microscopy, occurred only when the magnet was present and stimulating electrodes were activated. Pulsating MHD flow with a frequency similar to the stimulating waveform was superimposed over thermal convection (from a hotplate) for Triton-KHGB, but fluid speed was up to twice as fast for ruhex-Triton-KHGB. A large transient ionic current, achieved when switching on the stimulating electrodes, generates MHD perturbations visible over varying peristaltic flow. The well-controlled flow methodology of redox-MHD is applicable to any tissue type, being useful in various drug uptake and toxicity studies, and can be combined equally with on- or off-device analysis modalities. PMID:22271160

  9. Redox Redone.

    ERIC Educational Resources Information Center

    Petty, John T.

    1996-01-01

    Presents an extension of the change in oxidation number method that is used for balancing skeletal redox reactions in aqueous solutions. Retains most of the simplicity of the change in oxidation number method but provides the additional step-by-step process necessary for the beginner to balance an equation. (JRH)

  10. Redox-sensitive YFP sensors for monitoring dynamic compartment-specific glutathione redox state.

    PubMed

    Banach-Latapy, Agata; He, Tiantian; Dardalhon, Michèle; Vernis, Laurence; Chanet, Roland; Huang, Meng-Er

    2013-12-01

    Intracellular redox homeostasis is crucial for many cellular functions but accurate measurements of cellular compartment-specific redox states remain technically challenging. Genetically encoded biosensors including the glutathione-specific redox-sensitive yellow fluorescent protein (rxYFP) may provide an alternative way to overcome the limitations of conventional glutathione/glutathione disulfide (GSH/GSSG) redox measurements. This study describes the use of rxYFP sensors for investigating compartment-specific steady redox state and their dynamics in response to stress in human cells. RxYFP expressed in the cytosol, nucleus, or mitochondrial matrix of HeLa cells was responsive to the intracellular redox state changes induced by reducing as well as oxidizing agents. Compartment-targeted rxYFP sensors were able to detect different steady-state redox conditions among the cytosol, nucleus, and mitochondrial matrix. These sensors expressed in human epidermal keratinocytes HEK001 responded to stress induced by ultraviolet A radiation in a dose-dependent manner. Furthermore, rxYFP sensors were able to sense dynamic and compartment-specific redox changes caused by 100 μM hydrogen peroxide (H2O2). Mitochondrial matrix-targeted rxYFP displayed a greater dynamics of oxidation in response to a H2O2 challenge than the cytosol- and nucleus-targeted sensors, largely due to a more alkaline local pH environment. These observations support the view that mitochondrial glutathione redox state is maintained and regulated independently from that of the cytosol and nucleus. Taken together, our data show the robustness of the rxYFP sensors to measure compartmental redox changes in human cells. Complementary to existing redox sensors and conventional redox measurements, compartment-targeted rxYFP sensors provide a novel tool for examining mammalian cell redox homeostasis, permitting high-resolution readout of steady glutathione state and dynamics of redox changes. PMID:23891676

  11. Investigating the impacts of deep ocean euxinia on continental shelf environments during the Great Ordovician Biodiversification Event: did changes in global oceanic redox have any effect?

    NASA Astrophysics Data System (ADS)

    Marenco, P. J.; Marenco, K. N.; Phillips, D. E.; Garcia, E.; Toure, N.; Fullem, A.

    2013-12-01

    The Great Ordovician Biodiversification Event was one of the most important radiations in the history of animal life. In particular, the GOBE was characterized by pronounced increases in diversity within the Paleozoic and Modern Evolutionary Faunas (e.g., Droser and Finnegan, 2003). Rather than being attributable to a singular cause, a number of tectonic, ecologic, and climate-related factors are thought to have contributed to this biodiversification event (e.g., Servais et al., 2009). For example, continental shelf area during the GOBE was more extensive than at any other time during the Phanerozoic, and the availability of these warm, shallow-water, well-oxygenated environments likely influenced the radiation (e.g., Servais et al., 2009). Despite this evidence for favorable conditions, recent geochemical studies suggest that the early Paleozoic, including the Ordovician, was a time of episodic deep ocean euxinia (e.g., Gill et al., 2011, Thompson and Kah, 2012). It remains unclear how the hypothesized deep ocean euxinia may have affected the GOBE. For example, it is possible that episodic incursions of euxinic deep water onto the continental shelves may have acted to slow down the GOBE or even dampen its magnitude. On the other hand, such incursions may have accelerated the radiation by adding additional selection pressures to communities that were already adapting to new predation and substrate conditions. Alternatively, the GOBE may have proceeded without any incursions of euxinic deep water onto the continental shelves. One way to address this issue is to investigate short-term, localized redox changes in shallow marine settings. Here we present results from our ongoing investigation of redox changes in shallow-water environments from the Lower and Middle Ordovician of Utah. Specifically, we use abundances of total organic carbon (TOC) and total sulfur (TS) as localized redox proxies. We use the isotopic composition of carbonate associated sulfate (δ34SCAS

  12. Redox Imbalance and Morphological Changes in Skin Fibroblasts in Typical Rett Syndrome

    PubMed Central

    Amabile, Sonia; Belmonte, Giuseppe; Valacchi, Giuseppe; Galano, Jean-Marie; Ciccoli, Lucia; Renieri, Alessandra; Hayek, Joussef

    2014-01-01

    Evidence of oxidative stress has been reported in the blood of patients with Rett syndrome (RTT), a neurodevelopmental disorder mainly caused by mutations in the gene encoding the Methyl-CpG-binding protein 2. Little is known regarding the redox status in RTT cellular systems and its relationship with the morphological phenotype. In RTT patients (n = 16) we investigated four different oxidative stress markers, F2-Isoprostanes (F2-IsoPs), F4-Neuroprostanes (F4-NeuroPs), nonprotein bound iron (NPBI), and (4-HNE PAs), and glutathione in one of the most accessible cells, that is, skin fibroblasts, and searched for possible changes in cellular/intracellular structure and qualitative modifications of synthesized collagen. Significantly increased F4-NeuroPs (12-folds), F2-IsoPs (7.5-folds) NPBI (2.3-folds), 4-HNE PAs (1.48-folds), and GSSG (1.44-folds) were detected, with significantly decreased GSH (−43.6%) and GSH/GSSG ratio (−3.05 folds). A marked dilation of the rough endoplasmic reticulum cisternae, associated with several cytoplasmic multilamellar bodies, was detectable in RTT fibroblasts. Colocalization of collagen I and collagen III, as well as the percentage of type I collagen as derived by semiquantitative immunofluorescence staining analyses, appears to be significantly reduced in RTT cells. Our findings indicate the presence of a redox imbalance and previously unrecognized morphological skin fibroblast abnormalities in RTT patients. PMID:24987493

  13. Sedimentary Redox Conditions, Biogenic Production, and Oxygenation of Southeast Pacific Intermediate Waters Over the Past 30 ky.

    NASA Astrophysics Data System (ADS)

    Muratli, J.; Mix, A.; Chase, Z.; McManus, J.

    2007-12-01

    We present data from SE Pacific sediments in an effort to characterize the paleo-redox conditions of shallow (~400-1000 m) subsurface sediments, and the water masses that overlie them, over the past 30 ky. The sediments were recovered during ODP Leg 202, and come from three sites: 1233, 1234, and 1235; together these three sites constitute a vertical transect of Antarctic Intermediate Water (AAIW). Site 1233, at 41°S, sits in the core of AAIW at 838 m depth. Site 1234, at 36°S, is located between AAIW and the Pacific Central Water (PCW) mass. Site 1235 (489 m) is located close to Site 1234, but is between AAIW and the overlying low- dissolved-oxygen Gunther Undercurrent (GUC) water mass. Recent sediments for sites 1234 and 1235 contain a rich signature of biogenic opal production and enrichments of iron and the authigenic metals U, Mo, and Re. At site 1234 there is a minimum in biogenic Si at approximately 20 ky followed by a slight increase and a second minimum between 12 and 5 ky. At both sites 1233 and 1234 the trace metals exhibit more structure during the period of roughly 15 to 30 ky as compared to the most recent 15 ky. The trace metal data at site 1234 shows a sharp reducing signature at ~17 ky (higher Mo, lower U:Mo ratios), bracketed by periods of more oxygenated conditions (lower Mo, higher U:Mo) back to ~22 ky, and forward to ~12 ky. This combination of low biological production and more oxygenated bottom water may suggest a period of increased AAIW ventilation as far north as site 1234. Although it is difficult at this point to unequivocally separate the impact of ventilation from production using our current data base, it does appear that some of the observed changes in sedimentary character may be ventilation-driven rather than driven by local production.

  14. Redox condition in molten salts and solute behavior: A first-principles molecular dynamics study

    NASA Astrophysics Data System (ADS)

    Nam, Hyo On; Morgan, Dane

    2015-10-01

    Molten salts technology is of significant interest for nuclear, solar, and other energy systems. In this work, first-principles molecular dynamics (FPMD) was used to model the solute behavior in eutectic LiCl-KCl and FLiBe (Li2BeF4) melts at 773 K and 973 K, respectively. The thermo-kinetic properties for solute systems such as the redox potential, solute diffusion coefficients and structural information surrounding the solute were predicted from FPMD modeling and the calculated properties are generally in agreement with the experiments. In particular, we formulate an approach to model redox energetics vs. chlorine (or fluorine) potential from first-principles approaches. This study develops approaches for, and demonstrates the capabilities of, FPMD to model solute properties in molten salts.

  15. The Redox Code

    PubMed Central

    Jones, Dean P.

    2015-01-01

    Abstract Significance: The redox code is a set of principles that defines the positioning of the nicotinamide adenine dinucleotide (NAD, NADP) and thiol/disulfide and other redox systems as well as the thiol redox proteome in space and time in biological systems. The code is richly elaborated in an oxygen-dependent life, where activation/deactivation cycles involving O2 and H2O2 contribute to spatiotemporal organization for differentiation, development, and adaptation to the environment. Disruption of this organizational structure during oxidative stress represents a fundamental mechanism in system failure and disease. Recent Advances: Methodology in assessing components of the redox code under physiological conditions has progressed, permitting insight into spatiotemporal organization and allowing for identification of redox partners in redox proteomics and redox metabolomics. Critical Issues: Complexity of redox networks and redox regulation is being revealed step by step, yet much still needs to be learned. Future Directions: Detailed knowledge of the molecular patterns generated from the principles of the redox code under defined physiological or pathological conditions in cells and organs will contribute to understanding the redox component in health and disease. Ultimately, there will be a scientific basis to a modern redox medicine. Antioxid. Redox Signal. 23, 734–746. PMID:25891126

  16. The Influence of the Biological Pump on Marine Redox Conditions During Earth History

    NASA Astrophysics Data System (ADS)

    Meyer, K. M.; Ridgwell, A.; Payne, J.

    2015-12-01

    Evidence for bottom-water anoxia on the continental shelves waned over the course of the Phanerozoic, which may be influenced by secular changes in the biological pump that led to weaker positive feedbacks within the oceans. The biological pump describes the transfer of carbon from the atmosphere to the deep ocean, which creates vertical gradients in nutrients and oxygen, both important influences in the structure of marine ecosystems. We used the cGENIE Earth system model to quantitatively test the hypothesis that reductions in the efficiency of the nutrient recycling loop of the biological pump during the past 550 Ma reduced the extent of anoxia on the shelves and acted as an important control on marine animal ecosystems. When the modeled remineralization depth is shallow relative to the modern ocean, anoxia tends to be more widespread at continental shelf depths. As the modeled remineralization depth increases toward modern conditions, anoxia is less prevalent and occurs at depths below the continental shelves. Reduced marine productivity in the closed system configuration of cGENIE cannot produce the frequent bottom-water anoxia conditions envisioned for the Paleozoic. We hypothesize that evidence for greater animal abundance and metabolic demand during the Phanerozoic was driven by progressive oxygenation of shelf environments related to changes in the biological pump rather than greater food availability. In general, these model simulations suggest changes in the depth distribution of organic carbon remineralization may have controlled observed shifts in ocean chemistry, biogeochemical cycling, and ecosystem structure during the Phanerozoic.

  17. Arsenic redox changes by microbially and chemically formed semiquinone radicals and hydroquinones in a humic substance model quinone.

    PubMed

    Jiang, Jie; Bauer, Iris; Paul, Andrea; Kappler, Andreas

    2009-05-15

    Arsenic is a redox-active metalloid whose toxicity and mobility strongly depends on its oxidation state, with arsenite (As(III)) being more toxic and mobile than arsenate (As(V)). Humic substances (HS) are also redox-active and can potentially react with arsenic and change its redox state. In this study we show that semiquinone radicals produced during microbial or chemical reduction of a HS model quinone (AQDS, 9,10-anthraquinone-2,6-disulfonic acid) are strong oxidants. They oxidize arsenite to arsenate, thus decreasing As toxicity and mobility. This reaction depends strongly on pH with more arsenite (up to 67.3%) being oxidized at pH 11 compared to pH 7 (12.6% oxidation) and pH 3 (0.5% oxidation). In addition to As(III) oxidation by semiquinone radicals, hydroquinones that were also produced during quinone reduction reduced As(V) to As(III) at neutral and acidic pH values (less than 12%) but not at alkaline pH. In order to understand redox reactions between arsenite/arsenate and reduced/oxidized HS, we quantified the radical content in reduced quinone solutions and constructed Eh-pH diagrams that explain the observed redox reactions. The results from this study can be used to better predict the fate of arsenic in the environment and potentially explain the occurrence of oxidized As(V) in anoxic environments. PMID:19544866

  18. Plant Defense Response to Fungal Pathogens (II. G-Protein-Mediated Changes in Host Plasma Membrane Redox Reactions).

    PubMed Central

    Vera-Estrella, R.; Higgins, V. J.; Blumwald, E.

    1994-01-01

    Elicitor preparations containing the avr5 gene products from races 4 and 2.3 of Cladosporium fulvum, and tomato (Lycopersicon esculentum L.) cells containing the resistance gene Cf5 were used to investigate the involvement of redox processes in the production of active oxygen species associated with the plant response to the fungal elicitors. Here we demonstrate that certain race-specific elicitors of C. fulvum induced an increase in ferricyanide reduction in enriched plasma membrane fractions of tomato cells. The addition of elicitors to plasma membranes also induced increases in NADH oxidase and NADH-dependent cytochrome c reductase activities, whereas ascorbate peroxidase activity was decreased. These results suggest that changes in the host plasma membrane redox processes, transferring electrons from reducing agents to oxygen, could be involved in the increased production of active oxygen species by the race-specific elicitors. Our results also show that the dephosphorylation of enzymes involved in redox reactions is responsible for the race-specific induced redox activity. The effects of guanidine nucleotide analogs and mastoparan on the activation of plasma membrane redox reactions support the role of GTP-binding proteins in the transduction of signals leading to the activation of the defense response mechanisms of tomato against fungal pathogens. PMID:12232307

  19. Heterogeneous redox conditions, arsenic mobility, and groundwater flow in a fractured-rock aquifer near a waste repository site in New Hampshire, USA

    USGS Publications Warehouse

    Harte, Philip T.; Ayotte, Joseph D.; Hoffman, Andrew; Revesz, Kinga M.; Belaval, Marcel; Lamb, Steven; Böhlke, J.K.

    2012-01-01

    Anthropogenic sources of carbon from landfill or waste leachate can promote reductive dissolution of in situ arsenic (As) and enhance the mobility of As in groundwater. Groundwater from residential-supply wells in a fractured crystalline-rock aquifer adjacent to a Superfund site in Raymond, New Hampshire, USA, showed evidence of locally enhanced As mobilization in relatively reducing (mixed oxic-anoxic to anoxic) conditions as determined by redox classification and other lines of evidence. Redox classification was determined from geochemical indicators based on threshold concentrations of dissolved oxygen (DO), nitrate (NO3-), iron (Fe2+), manganese (Mn2+), and sulfate (SO42-). Redox conditions were evaluated also based on methane (CH4), excess nitrogen gas (N2) from denitrification, the oxidation state of dissolved As speciation (As(III) and As(V)), and several stable isotope ratios. Samples from the residential-supply wells primarily exhibit mixed redox conditions, as most have long open boreholes (typically 50–100 m) that receive water from multiple discrete fractures with contrasting groundwater chemistry and redox conditions. The methods employed in this study can be used at other sites to gauge redox conditions and the potential for As mobilization in complex fractured crystalline-rock aquifers where multiple lines of evidence are likely needed to understand As occurrence, mobility, and transport.

  20. Heterogeneous redox conditions, arsenic mobility, and groundwater flow in a fractured-rock aquifer near a waste repository site in New Hampshire, USA

    NASA Astrophysics Data System (ADS)

    Harte, Philip T.; Ayotte, Joseph D.; Hoffman, Andrew; Révész, Kinga M.; Belaval, Marcel; Lamb, Steven; Böhlke, J. K.

    2012-09-01

    Anthropogenic sources of carbon from landfill or waste leachate can promote reductive dissolution of in situ arsenic (As) and enhance the mobility of As in groundwater. Groundwater from residential-supply wells in a fractured crystalline-rock aquifer adjacent to a Superfund site in Raymond, New Hampshire, USA, showed evidence of locally enhanced As mobilization in relatively reducing (mixed oxic-anoxic to anoxic) conditions as determined by redox classification and other lines of evidence. Redox classification was determined from geochemical indicators based on threshold concentrations of dissolved oxygen (DO), nitrate (NO{3/-}), iron (Fe2+), manganese (Mn2+), and sulfate (SO{4/2-}). Redox conditions were evaluated also based on methane (CH4), excess nitrogen gas (N2) from denitrification, the oxidation state of dissolved As speciation (As(III) and As(V)), and several stable isotope ratios. Samples from the residential-supply wells primarily exhibit mixed redox conditions, as most have long open boreholes (typically 50-100 m) that receive water from multiple discrete fractures with contrasting groundwater chemistry and redox conditions. The methods employed in this study can be used at other sites to gauge redox conditions and the potential for As mobilization in complex fractured crystalline-rock aquifers where multiple lines of evidence are likely needed to understand As occurrence, mobility, and transport.

  1. Redox-magnetohydrodynamic microfluidics without channels and compatible with electrochemical detection under immunoassay conditions.

    PubMed

    Weston, Melissa C; Nash, Christena K; Fritsch, Ingrid

    2010-09-01

    A unique capability of redox-magnetohydrodynamics (redox-MHD) for handling liquids on a small scale was demonstrated. A 1.2 muL solution plug was pumped from an injection site to a detector without the need for a channel to direct the flow. The redox pumping species did not interfere with enzymatic activity in a solution compatible with enzyme-linked immunoassays. Alkaline phosphatase (AP), a common enzyme label, converted p-aminophenyl phosphate (PAPP) to p-aminophenol (PAP(R)) in the presence of 2.5 mM Ru(NH(3))(6)Cl(2) and 2.5 mM Ru(NH(3))(6) Cl(3), in 0.1 M Tris buffer (pH = 9). A solution plug containing PAPP (no AP) was pumped through the surrounding solution containing AP (no PAPP), and the enzymatically generated PAP(R) was easily detected and distinguishable electrochemically from the pumping species with square wave voltammetry down to 0.1 mM concentrations. The test device consisted of a silicon chip containing individually addressable microband electrodes, placed on a 0.5 T NdFeB permanent magnet with the field oriented perpendicular to the chip. A 8.0 mm wide x 15.5 mm long x 1.5 mm high volume of solution was contained by a poly(dimethylsiloxane) gasket and capped with a glass slide. A steady-state fluid velocity of approximately 30 mum/s was generated in a reinforcing flow configuration between oppositely polarized sets of pumping electrodes with approximately 2.1 muA. PMID:20681513

  2. Redox-Magnetohydrodynamic Microfluidics Without Channels and Compatible with Electrochemical Detection Under Immunoassay Conditions

    PubMed Central

    Weston, Melissa C.; Nash, Christena K.; Fritsch, Ingrid

    2010-01-01

    A unique capability of redox-magnetohydrodynamics (redox-MHD) for handling liquids on a small scale was demonstrated. A 1.2-μL solution plug was pumped from an injection site to a detector without the need for a channel to direct the flow. The redox pumping species did not interfere with enzymatic activity in a solution compatible with enzyme-linked immunoassays. Alkaline phosphatase (AP), a common enzyme label, converted p-aminophenyl phosphate (PAPP) to p-aminophenol (PAPR) in the presence of 2.5 mM Ru(NH3)6Cl2 and 2.5 mM Ru(NH3)6 Cl3, in 0.1 M Tris buffer (pH=9). A solution plug containing PAPP (no AP) was pumped through the surrounding solution containing AP (no PAPP), and the enzymatically-generated PAPR was easily detected and distinguishable electrochemically from the pumping species with square wave voltammetry down to 0.1 mM concentrations. The test device consisted of a silicon chip containing individually-addressable microband electrodes, placed on a 0.5-T NdFeB permanent magnet with the field oriented perpendicular to the chip. A 8.0-mm wide × 15.5-mm long × 1.5-mm high volume of solution was contained by a poly(dimethylsiloxane) gasket and capped with a glass slide. A steady-state fluid velocity of ~30 μm/s was generated in a reinforcing flow configuration between oppositely polarized sets of pumping electrodes with ~2.1 μA. PMID:20681513

  3. Organelle redox autonomy during environmental stress.

    PubMed

    Bratt, Avishay; Rosenwasser, Shilo; Meyer, Andreas; Fluhr, Robert

    2016-09-01

    Oxidative stress is generated in plants because of inequalities in the rate of reactive oxygen species (ROS) generation and scavenging. The subcellular redox state under various stress conditions was assessed using the redox reporter roGFP2 targeted to chloroplastic, mitochondrial, peroxisomal and cytosolic compartments. In parallel, the vitality of the plant was measured by ion leakage. Our results revealed that during certain physiological stress conditions the changes in roGFP2 oxidation are comparable to application of high concentrations of exogenous H2 O2 . Under each stress, particular organelles were affected. Conditions of extended dark stress, or application of elicitor, impacted chiefly on the status of peroxisomal redox state. In contrast, conditions of drought or high light altered the status of mitochondrial or chloroplast redox state, respectively. Amalgamation of the results from diverse environmental stresses shows cases of organelle autonomy as well as multi-organelle oxidative change. Importantly, organelle-specific oxidation under several stresses proceeded cell death as measured by ion leakage, suggesting early roGFP oxidation as predictive of cell death. The measurement of redox state in multiple compartments enables one to look at redox state connectivity between organelles in relation to oxidative stress as well as assign a redox fingerprint to various types of stress conditions. PMID:27037976

  4. Changes in sedimentary redox associated with mussel (Mytilus edulis L.) farms on the west-coast of Scotland.

    PubMed

    Wilding, Thomas A

    2012-01-01

    Aquaculture is growing rapidly in response to an increasing demand for protein and the over-exploitation of wild fisheries. Mussel (family Mytilidae) production has doubled over the last decade and currently stands at 1.5 million tones production per annum. Mussels produce organic biodeposits which are dispersed around the production site and, potentially, impact the receiving environment in a number of inter-linked ways. The reported benthic impacts that occur, primarily through the accumulation of these biodeposits and associated organic enrichment, vary widely between studies. The objectives of this research were to determine the nature of the relationship between sediment redox (a proxy for oxygenation) and farm-proximity and covariables whilst accounting for, and quantifying, differences in redox between sites. Sediment cores (N = 159) were taken remotely around a random sample of mussel farms, redox was measured at 10 mm sediment depth and linked to farm-distance and sediment organic/shell content and particle size, using an additive, mixed, weighted regression model. Redox varied considerably between sites and there was a highly significant reduction (50 mV) in redox adjacent to the mussel lines. Redox increased non-linearly with distance, rising rapidly at >7 m from the farm edge. The modest reduction in sediment oxygenation in close proximity to mussel farms reported here suggests that farms located over sediments characterised by pre-existing oxygen stress are likely to exacerbate benthic species impoverishment associated with reducing sedimentary conditions whilst those located over highly oxygenated sediments are likely to increase benthic productivity. PMID:23028817

  5. Modeling biogeochemical processes in subterranean estuaries: Effect of flow dynamics and redox conditions on submarine groundwater discharge of nutrients

    NASA Astrophysics Data System (ADS)

    Spiteri, Claudette; Slomp, Caroline P.; Tuncay, Kagan; Meile, Christof

    2008-02-01

    A two-dimensional density-dependent reactive transport model, which couples groundwater flow and biogeochemical reactions, is used to investigate the fate of nutrients (NO3-, NH4+, and PO4) in idealized subterranean estuaries representing four end-members of oxic/anoxic aquifer and seawater redox conditions. Results from the simplified model representations show that the prevalent flow characteristics and redox conditions in the freshwater-seawater mixing zone determine the extent of nutrient removal and the input of nitrogen and phosphorus to coastal waters. At low to moderate groundwater velocities, simultaneous nitrification and denitrification can lead to a reversal in the depth of freshwater NO3- and NH4+-PO4 plumes, compared to their original positions at the landward source. Model results suggest that autotrophic denitrification pathways with Fe2+ or FeS2 may provide an important, often overlooked link between nitrogen and phosphorus biogeochemistry through the precipitation of iron oxides and subsequent binding of phosphorus. Simulations also highlight that deviations of nutrient data from conservative mixing curves do not necessarily indicate nutrient removal.

  6. The effects of water radiolysis on local redox conditions in the Oklo, Gabon, natural fission reactors 10 and 16

    NASA Astrophysics Data System (ADS)

    Savary, Véronique; Pagel, Maurice

    1997-11-01

    In an underground nuclear waste repository, the chemical behavior of some stored fission products and actinides depends on the redox conditions during their long-term evolution. In this respect, radiolysis is an important phenomenon which can significantly modify the local redox conditions. The Oklo natural fission zones are good examples where the effect of radiolysis can be deduced from a mineralogical and geochemical study. Zones 10 and 16 were studied because they are located at depth of 270 m in an area devoid of any recent water circulation and not subject to the effect of the lateritic alteration occurring elsewhere in this area. In zone 10, there is a marked evolution of the UPbFeS mineralogy from the center to the periphery of the reactor zone. In the center, uraninite shows silicification and coffinitisation with the formation of galena and native lead; the PbO content of uraninite can be as much as 20 wt%. In the periphery of the reactor zone, some radiogenic lead is present as minium (Pb 30 4) and in Pb-bearing calcite. In the surrounding sandstones, hematite is widespread. In zone 16, the mineral paragenesis is generally comparable with that of zone 10 but with some differences. Galena is the only Pb-bearing mineral associated with uraninite crystals. The PbO content of uraninite is always <7 wt%. In the periphery of the alteration zone, barite partly replaces quartz. In the reactor zone, hematite is sometimes replaced by pyrite. In an area where the fission zone 10 is in contact with sandstones devoid of organic matter, H 2OH 2O 2 and H 20H 2 ± CH 4 inclusions were observed in healed microcracks in the detrital quartz grains. Based on microthermometric measurements, the salinity of the aqueous solution ranges from 0.2 to 18 wt% eq. NaCl. Raman analysis of the gas phase indicates that the hydrogen to oxygen ratio differs from an inclusion to the other. The presence of H 2- and O 2-bearing fluid inclusions confirms the existence of water

  7. NOVELTY DETECTION UNDER CHANGING ENVIRONMENTAL CONDITIONS

    SciTech Connect

    H. SOHN; K. WORDER; C. R. FARRAR

    2001-04-01

    The primary objective of novelty detection is to examine a system's dynamic response to determine if the system significantly deviates from an initial baseline condition. In reality, the system is often subject to changing environmental and operation conditions that affect its dynamic characteristics. Such variations include changes in loading, boundary conditions, temperature, and moisture. Most damage diagnosis techniques, however, generally neglect the effects of these changing ambient conditions. Here, a novelty detection technique is developed explicitly taking into account these natural variations of the system in order to minimize false positive indications of true system changes. Auto-associative neural networks are employed to discriminate system changes of interest such as structural deterioration and damage from the natural variations of the system.

  8. Normalized rare earth elements in water, sediments, and wine: identifying sources and environmental redox conditions

    USGS Publications Warehouse

    Piper, David Z.; Bau, Michael

    2013-01-01

    The concentrations of the rare earth elements (REE) in surface waters and sediments, when normalized on an element-by-element basis to one of several rock standards and plotted versus atomic number, yield curves that reveal their partitioning between different sediment fractions and the sources of those fractions, for example, between terrestrial-derived lithogenous debris and seawater-derived biogenous detritus and hydrogenous metal oxides. The REE of ancient sediments support their partitioning into these same fractions and further contribute to the identification of the redox geochemistry of the sea water in which the sediments accumulated. The normalized curves of the REE that have been examined in several South American wine varietals can be interpreted to reflect the lithology of the bedrock on which the vines may have been grown, suggesting limited fractionation during soil development.

  9. Determination of Cr isotopic composition in low-level carbonates by MC-ICP-MS: a sensitive proxy for redox changes?

    NASA Astrophysics Data System (ADS)

    Bonnand, Pierre; Parkinson, Ian; James, Rachael; Karjalainen, Anne-Mari; Fehr, Manuela; Fairchild, Ian

    2010-05-01

    Geochemical data suggest that atmospheric oxygen increased during two major steps: the Great oxidation event (~2.4 Ga) and the Neoproterozoic (~1Ga-545Ma). The O2 concentration in the atmosphere is strongly linked to the redox condition of the oceans. Therefore the study of redox sensitive elements in marine sediments can be used to evaluate the evolution of O2 concentrations in the atmosphere. Chromium is a redox sensitive element which significantly fractionates its isotopes during the reduction of Cr(VI) to Cr(III) (Ellis et al., 2002). Thus, Cr isotopes can be used to assess redox changes in the past oceans. Chromium isotopic compositions in sedimentary rocks (BIFs) have been used to determine the evolution of the O2 concentration in the atmosphere during the Proterozoic (Frei et al., 2009). We have developed a chemical procedure for the purification of Cr in carbonates by using a single cation column to separate the Cr from the matrix, Fe, Ti and V. Cr isotopic compositions are determined used a 50Cr-54Cr double spike method and analysed on a ThermoFisher Neptune MC-ICP-MS using HR and MR in order to be able to discriminate Ar interferences. Standards and samples are analysed as 50ppb Cr solutions and yield an external reproducibility 50 and 70ppm. This new method allowed us to analyse samples with a Cr concentrations as low as 1ppm. We have analysed a suite of Neoproterozoic carbonates from Australia, but also modern ooids and oolithic limestones through the Phanerozoic. The Cr isotopic data for carbonates record a range of δ53Cr between -0.1 and +1.7. This range indicates that some of these carbonates clearly reflect oxidising conditions in the ocean. By comparison, the Neoproterozoic samples have Cr isotopic compositions close to the continental crust value (-0.1 to 0.1), indicating the Neoproterozoic samples reflect deposition under more reducing conditions These data suggests that the redox condition during the deposition of shallow-water carbonates

  10. Relationship between Prevailing Redox Conditions, Water Type, Topographic Location and Methane Concentrations in Susquehanna County, NE Pennsylvania

    NASA Astrophysics Data System (ADS)

    Molofsky, L. J.; McHugh, T. E.; Connor, J. A.; Richardson, S. D.

    2014-12-01

    Historical occurrence of methane in residential water wells in parts of the Appalachian basin (Pennsylvania, New York, West Virginia) has long been recognized as a natural phenomenon. The recent increase in shale gas extraction activities in these areas has highlighted the need to distinguish between baseline methane concentrations and those that may results from gas extraction activities. For the first time, this study shows that natural dissolved methane in Northeastern Pennsylvania exhibits a relationship with prevailing redox conditions of groundwater, though this relationship is not entirely as predicted. Specifically, methane concentrations in 806 pre-drill samples from residential water wells in Susquehanna County, NE Pennsylvania, were found to be highest in samples with low SO4 concentrations but low Fe(II) concentrations. This is opposite from what would be expected if high methane concentrations were associated with a reduction of insoluble Fe(III)-minerals resulting in the release of soluble Fe(II) (and therefore, an increase in measurable dissolved iron). The water type (i.e., Na-rich vs. Ca-rich), and topographic location (i.e., valley vs. upland) was also evaluated for each of the prevailing redox states to identify associations and potential driving factors. Based on this information, this talk identifies a combination of easily identifiable natural environmental "risk" factors (i.e., advanced redox state, Na-rich water type, and valley setting) that are highly predictive of naturally elevated methane concentrations in water wells. These findings highlight simple and meaningful relationships that may be used to infer whether methane in residential water sources is natural or associated with stray gas migration.

  11. Monitoring Intracellular Redox Changes in Ozone-exposed airway epithelial cells

    EPA Science Inventory

    Background: The toxicity of many compounds involves oxidative injury to cells. Direct assessment of mechanistic events involved in xenobiotic-induced oxidative stress is not easily achievable. Development of genetically-encoded probes designed for monitoring intracellular redox s...

  12. Tirapazamine has no Effect on Hepatotoxicity of Cisplatin and 5-fluorouracil but Interacts with Doxorubicin Leading to Side Changes in Redox Equilibrium.

    PubMed

    Mandziuk, Slawomir; Matysiak, Wlodzimierz; Korga, Agnieszka; Burdan, Franciszek; Pasnik, Iwona; Hejna, Marcin; Korobowicz-Markiewicz, Agnieszka; Grzycka-Kowalczyk, Luiza; Kowalczyk, Michal; Poleszak, Ewa; Jodlowska-Jedrych, Barbara; Dudka, Jaroslaw

    2016-09-01

    Tirapazamine is a hypoxia-activated prodrug which was shown to exhibit up to 300 times greater cytotoxicity under anoxic in comparison with aerobic conditions. Thus, the combined anticancer therapy of tirapazamine with a routinely used anticancer drug seems to be a promising solution. Because tirapazamine undergoes redox cycle transformation in this study, the effect of tirapazamine on redox hepatic equilibrium, lipid status and liver morphology was evaluated in rats exposed to cisplatin, doxorubicin and 5-fluorouracil. Rats were intraperitoneally injected with tirapazamine and a particular cytostatic. The animals were killed, and blood and liver were collected. Hepatic glucose, total cholesterol, triglycerides, NADH, NADPH glutathione and the activity of glucose-6-phosphate dehydrogenase were determined. Liver morphology and the immune expression of HMG-CoA-reductase were also assessed. Glucose, total cholesterol, triglycerides, bilirubin concentrations and the activity of aspartate and alanine aminotransferases were determined in the plasma. Tirapazamine displayed insignificant interactions with cisplatin and 5-fluorouracil referring to hepatic morphology and biochemical parameters. However, tirapazamine interacts with doxorubicin, thus leading to side changes in redox equilibrium and lipid peroxidation, but those effects are not severe enough to exclude that drug combination from further studies. Thus, tirapazamine seems to be a promising agent in successive studies on anticancer activity in similar schedules. PMID:26990033

  13. Changes in the redox state of sediments following the 2010 BP blowout

    NASA Astrophysics Data System (ADS)

    Hastings, D. W.; Brooks, G.; Hollander, D. J.; Larson, R. A.; Morford, J. L.; Romero, I.; Hammaker, S.; Hogan, A.; Roeder, T. K.

    2012-12-01

    We have collected multi-core sediment cores from over 40 sites along the NE Gulf of Mexico continental slope following the 2010 Deepwater Horizon oil spill. We present the geochemical results from four select sites collected on August 2010, December 2010, February 2011, September 2011, and August 2012. Cores were extruded at 2 mm intervals, and sediments were analyzed for TOC, 13C, carbonate, short-lived radioisotopes (Pb-210, Cs-137, Be-7, Th-234) and grain size. Cores reveal a well-defined, internally stratified dark brown layer in the top 1-6 cm, with finer grain size than underlying sediments. Samples were digested at high temperature and pressure in concentrated nitric acid to dissolve both the oil and authigenic fractions, but not the detrital component. Samples were subsequently analyzed by ICP-MS. Although the Macondo crude oil is slightly enriched in Ni, V, and Co, with concentrations of 2.8, 0.9, and 0.08ppm, respectively, no significant enrichment of these metals is observed in Gulf of Mexico sediments. Sediment mass accumulation rates following the event range from 0.6 - 20 g/cm2/yr, which are one to two orders of magnitude higher than pre-spill rates. Organic and inorganic carbon deposition rates from the 2010 and February 2011 cores are also elevated one to two orders of magnitude. 13C signatures of this recent deposited material are slightly depleted relative to pre-oil event material. Large sedimentation rates, depleted 13C values and lack of bioturbation on the surface of the deep sediments studied supports the hypothesis of a large sea-snow-like blizzard event during the oil-spill in 2010. Bacterially mediated oxidation of organic matter is reflected in a well-established sequence of oxidation-reduction reactions. We exploit redox sensitive trace elements including Mn, Fe, Re, U, Mo, and V to infer changes in the redox state of sediments following this large pulse of organic matter to the seafloor.

  14. Understanding Biogeochemical Transformations Of Trace Elements In Multi Metal-Rich Geomaterials Under Stimulated Redox Conditions

    EPA Science Inventory

    Natural and anthropogenic influences on hydrological conditions can induce periodic or long-term reduced conditions in geologic materials. Such conditions can cause significant impacts on biogeochemical processes of trace elements in subsurface or near surface environments. The...

  15. Flavin Redox Switching of Protein Functions

    PubMed Central

    Zhu, Weidong; Moxley, Michael A.

    2011-01-01

    Abstract Flavin cofactors impart remarkable catalytic diversity to enzymes, enabling them to participate in a broad array of biological processes. The properties of flavins also provide proteins with a versatile redox sensor that can be utilized for converting physiological signals such as cellular metabolism, light, and redox status into a unique functional output. The control of protein functions by the flavin redox state is important for transcriptional regulation, cell signaling pathways, and environmental adaptation. A significant number of proteins that have flavin redox switches are found in the Per-Arnt-Sim (PAS) domain family and include flavoproteins that act as photosensors and respond to changes in cellular redox conditions. Biochemical and structural studies of PAS domain flavoproteins have revealed key insights into how flavin redox changes are propagated to the surface of the protein and translated into a new functional output such as the binding of a target protein in a signaling pathway. Mechanistic details of proteins unrelated to the PAS domain are also emerging and provide novel examples of how the flavin redox state governs protein–membrane interactions in response to appropriate stimuli. Analysis of different flavin switch proteins reveals shared mechanistic themes for the regulation of protein structure and function by flavins. Antioxid. Redox Signal. 14, 1079–1091. PMID:21028987

  16. Evidence for Changes in Redox State During Crystallization of Allende Type B1 Inclusions

    NASA Astrophysics Data System (ADS)

    Simon, S. B.; Davis, A. M.; Grossman, L.

    1992-07-01

    /Eu, sharp increases in trivalent REE content. Because the only elements that consistently show spikes, Ti and V, are also the only elements in fassaite with multiple oxidation states at the range of Tfo(sub)2 conditions under which refractory inclusions crystallized (Beckett, 1986), we now believe that the spikes reflect redox reactions that increased the Ti^3+ and V^3+ contents of the residual liquids. Gradual decreases in Ti^3+/Ti^tot from core to rim in fassaite in TS33 and TS34 and before the spikes in TS23 indicate that the residual liquids did not re-equilibrate with the reducing, solar nebular gas throughout most of the interval of fassaite crystallization. Late reequilibration, perhaps by entry of the solar gas via cracks in the cooling CAI, would increase the Ti^3+/Ti^tot of the liquid. The Ti^3+-poor rims of fassaite crystals would then be out of equilibrium with the liquid. Resorption of the rims may have occurred, followed by deposition of relatively Ti^3+-rich fassaite. This is consistent with the observations of sharp, irregular low-Ti/high-Ti boundaries. Of the V species presumed to be present in the CAIs, V^3+ should be favored in fassaite over V^2+, based on its ionic radius. Increasing the V^3+ content of the liquid is a problem, however, because this requires oxidation of V^2+ when Ti is being reduced. Perhaps, prior to reequilibration, the internal fO(sub)2 of the inclusions became high enough to stabilize V^4+, which was reduced to V%3+. REFERENCES: Beckett J.R. (1986) Ph.D. Thesis, University of Chicago, 373 pp. Simon S.B. and Grossman L. (1991) Meteoritics 26, 395.

  17. Proxies for Redox Conditions during early Aptian Ocean Anoxic Event 1a

    NASA Astrophysics Data System (ADS)

    Brassell, S. C.

    2012-04-01

    addition, the elevated Mo concentrations (7 - 540 ppm) in these sediments are typical of euxinic conditions, and yet marcasite, a likely product of pyrite oxidation, is prevalent throughout the section. Comparison of these proxies reveals a correspondence between the lycopane index and Mo concentrations, with higher values for both parameters during warmer intervals. These results suggest that specific indicators for levels of oxygenation may perhaps be controlled by environmental variables including changes in ocean temperatures that exert an influence on surface ocean conditions that govern seasonal productivity and affect stratification in the water column, and yet are independent from the controls on anoxia within the sediment after deposition.

  18. Regulation of gap junction channels and hemichannels by phosphorylation and redox changes: a revision.

    PubMed

    Pogoda, Kristin; Kameritsch, Petra; Retamal, Mauricio A; Vega, José L

    2016-01-01

    Post-translational modifications of connexins play an important role in the regulation of gap junction and hemichannel permeability. The prerequisite for the formation of functional gap junction channels is the assembly of connexin proteins into hemichannels and their insertion into the membrane. Hemichannels can affect cellular processes by enabling the passage of signaling molecules between the intracellular and extracellular space. For the intercellular communication hemichannels from one cell have to dock to its counterparts on the opposing membrane of an adjacent cell to allow the transmission of signals via gap junctions from one cell to the other. The controlled opening of hemichannels and gating properties of complete gap junctions can be regulated via post-translational modifications of connexins. Not only channel gating, but also connexin trafficking and assembly into hemichannels can be affected by post-translational changes. Recent investigations have shown that connexins can be modified by phosphorylation/dephosphorylation, redox-related changes including effects of nitric oxide (NO), hydrogen sulfide (H2S) or carbon monoxide (CO), acetylation, methylation or ubiquitination. Most of the connexin isoforms are known to be phosphorylated, e.g. Cx43, one of the most studied connexin at all, has 21 reported phosphorylation sites. In this review, we provide an overview about the current knowledge and relevant research of responsible kinases, connexin phosphorylation sites and reported effects on gap junction and hemichannel regulation. Regarding the effects of oxidants we discuss the role of NO in different cell types and tissues and recent studies about modifications of connexins by CO and H2S. PMID:27229925

  19. Virgin coconut oil maintains redox status and improves glycemic conditions in high fructose fed rats.

    PubMed

    Narayanankutty, Arunaksharan; Mukesh, Reshma K; Ayoob, Shabna K; Ramavarma, Smitha K; Suseela, Indu M; Manalil, Jeksy J; Kuzhivelil, Balu T; Raghavamenon, Achuthan C

    2016-01-01

    Virgin Coconut Oil (VCO), extracted from fresh coconut kernel possess similar fatty acid composition to that of Copra Oil (CO), a product of dried kernel. Although CO forms the predominant dietary constituent in south India, VCO is being promoted for healthy life due to its constituent antioxidant molecules. High fructose containing CO is an established model for insulin resistance and steatohepatitis in rodents. In this study, replacement of CO with VCO in high fructose diet markedly improved the glucose metabolism and dyslipidemia. The animals fed VCO diet had only 17 % increase in blood glucose level compared to CO fed animals (46 %). Increased level of GSH and antioxidant enzyme activities in VCO fed rats indicate improved hepatic redox status. Reduced lipid peroxidation and carbonyl adducts in VCO fed rats well corroborate with the histopathological findings that hepatic damage and steatosis were comparatively reduced than the CO fed animals. These results suggest that VCO could be an efficient nutraceutical in preventing the development of diet induced insulin resistance and associated complications possibly through its antioxidant efficacy. PMID:26788013

  20. Investigating redox processes under diffusive and advective flow conditions using a coupled omics and synchrotron approach

    NASA Astrophysics Data System (ADS)

    Kemner, K. M.; Boyanov, M.; Flynn, T. M.; O'Loughlin, E. J.; Antonopoulos, D. A.; Kelly, S.; Skinner, K.; Mishra, B.; Brooks, S. C.; Watson, D. B.; Wu, W. M.

    2015-12-01

    FeIII- and SO42--reducing microorganisms and the mineral phases they produce have profound implications for many processes in aquatic and terrestrial systems. In addition, many of these microbially-catalysed geochemical transformations are highly dependent upon introduction of reactants via advective and diffusive hydrological transport. We have characterized microbial communities from a set of static microcosms to test the effect of ethanol diffusion and sulfate concentration on UVI-contaminated sediment. The spatial distribution, valence states, and speciation of both U and Fe were monitored in situ throughout the experiment by synchrotron x-ray absorption spectroscopy, in parallel with solution measurements of pH and the concentrations of sulfate, ethanol, and organic acids. After reaction initiation, a ~1-cm thick layer of sediment near the sediment-water (S-W) interface became visibly dark. Fe XANES spectra of the layer were consistent with the formation of FeS. Over the 4 year duration of the experiment, U LIII-edge XANES indicated reduction of U, first in the dark layer and then throughout the sediment. Next, the microcosms were disassembled and samples were taken from the overlying water and different sediment regions. We extracted DNA and characterized the microbial community by sequencing 16S rRNA gene amplicons with the Illumina MiSeq platform and found that the community evolved from its originally homogeneous composition, becoming significantly spatially heterogeneous. We have also developed an x-ray accessible column to probe elemental transformations as they occur along the flow path in a porous medium with the purpose of refining reactive transport models (RTMs) that describe coupled physical and biogeochemical processes in environmental systems. The elemental distribution dynamics and the RTMs of the redox driven processes within them will be presented.

  1. Redox Imbalance in Lung Cancer of Patients with Underlying Chronic Respiratory Conditions

    PubMed Central

    Mateu-Jiménez, Mercè; Sánchez-Font, Albert; Rodríguez-Fuster, Alberto; Aguiló, Rafael; Pijuan, Lara; Fermoselle, Clara; Gea, Joaquim; Curull, Víctor; Barreiro, Esther

    2016-01-01

    Chronic respiratory diseases such as obstructive pulmonary disease (COPD) and oxidative stress may underlie lung cancer (LC). We hypothesized that the profile of oxidative and antioxidant events may differ in lung tumors and blood compartments of patients with non-small cell LC (NSCLC) with and without COPD. Redox markers (immunoblotting, ELISA, chemiluminescence, 2D electrophoresis and proteomics) were analyzed in blood samples of 17 control subjects and 80 LC patients (59 LC-COPD and 21 LC) and lung specimens (tumor and nontumor) from those undergoing thoracotomy (35 patients: 23 LC-COPD and 12 LC). As smoking history was more prevalent in LC-COPD patients, these were further analyzed post hoc as heavy and moderate smokers (cutoff, 60 pack-years). Malondialdehyde (MDA)–protein adducts and SOD1 levels were higher in tumor and nontumor samples of LC-COPD than in LC. In tumors compared with nontumors, SOD2 protein content was greater, whereas catalase levels were decreased in both LC and LC-COPD patients. Blood superoxide anion levels, protein carbonylation and nitration were greater in LC and LC-COPD patients than in the controls, and in the latter patients compared with the former. Systemic superoxide anion, protein carbonyls and nitrotyrosine above specific cutoff values best identified underlying COPD among all patients. Smoking did not influence the study results. A differential expression profile of oxidative stress markers exists in blood and, to a lesser extent, in the tumors of LC-COPD patients. These findings suggest that systemic oxidative stress and lung antioxidants (potential biomarkers) may predispose patients with chronic respiratory diseases to a higher risk for LC. PMID:26772773

  2. Trace elements geochemistry of kerogen in Upper Cretaceous sediments, Chad (Bornu) Basin, northeastern Nigeria: Origin and paleo-redox conditions

    NASA Astrophysics Data System (ADS)

    Adegoke, Adebanji Kayode; Abdullah, Wan Hasiah; Hakimi, Mohammed Hail; Sarki Yandoka, Babangida M.; Mustapha, Khairul Azlan; Aturamu, Adeyinka Oluyemi

    2014-12-01

    Trace element contents in isolated kerogen from Upper Cretaceous sediments within Gongila and Fika formations in the Chad (Bornu) Basin, northeastern Nigeria were determined using Inductively-coupled plasma mass spectrometer (ICP-MS), in order to infer the origin of the organic matter and the paleo-redox conditions during their sedimentation. The concentrations of the elements in the kerogen samples varied from 1.01 to 24,740 ppm. The distribution of elements shows that Fe is the most abundant element in Chad (Bornu) Basin kerogen, followed by Ce. Among the biophile elements, V is the most abundant, followed by Ni and Co in that order. Statistical evaluation of the elemental composition data shows that As, Ce, Pb, V, Cr, Fe, Co, Ni and U exhibit good positive correlations with each other. Molybdenum, on the other hand displays no obvious correlation with most of the trace elements determined including TOC, but has good positive correlation with TS and negative correlation with Tmax, Ce and Th, which suggests that the concentration of Mo decreases with increasing maturity and vice versa. Some trace element concentrations and their ratios suggest mixed marine and terrigenous source input for the organic matter (kerogen) in Chad (Bornu) Basin. More so, the concentrations of redox-sensitive elements, such as V, Ni, Cu, Cr Mo and Mn, in the kerogen samples suggest dysoxic bottom water conditions within the Gongila and Fika sediments. Cross-plots of V and Ni and V/(V + Ni) ratio also indicate that the organic matter of these samples was deposited in slightly reducing environments.

  3. Redox Regulation of Cytosolic Translation in Plants.

    PubMed

    Moore, Marten; Gossmann, Nikolaj; Dietz, Karl-Josef

    2016-05-01

    Control of protein homeostasis is crucial for environmental acclimation of plants. In this context, translational control is receiving increasing attention, particularly since post-translational modifications of the translational apparatus allow very fast and highly effective control of protein synthesis. Reduction and oxidation (redox) reactions decisively control translation by modifying initiation, elongation, and termination of translation. This opinion article compiles information on the redox sensitivity of cytosolic translation factors and the significance of redox regulation as a key modulator of translation for efficient acclimation to changing environmental conditions. PMID:26706442

  4. Changes in glutathione-dependent redox status and mitochondrial energetic strategies are part of the adaptive response during the filamentation process in Candida albicans.

    PubMed

    Hala, Guedouari; Rachel, Gergondey; Arthur, Bourdais; Océane, Vanparis; Anne-Laure, Bulteau; Jean-Michel, Camadro; Françoise, Auchère

    2014-10-01

    Candia albicans is an opportunist pathogen responsible for a large spectrum of infections, from superficial mycosis to systemic diseases called candidiasis. Its ability to grow in various morphological forms, such as unicellular budding yeast, filamentous pseudohyphae and hyphae, contributes to its survival in the diverse microenvironments it encounters in the host. During infection in vivo, C. albicans is faced with high levels of ROS generated by phagocytes, and the thiol-dependent redox status of the cells reflects their levels of oxidative stress. We investigated the role of glutathione during the transition between the yeast and hyphal forms of the pathogen, in relation to possible changes in mitochondrial bioenergetic pathways. Using various growth media and selective mutations affecting the filamentation process, we showed that C. albicans filamentation was always associated with a depletion of intracellular glutathione levels. Moreover, the induction of hypha formation resulted in general changes in thiol metabolism, including the oxidation of cell surface -SH groups and glutathione excretion. Metabolic adaptation involved TCA cycle activation, acceleration of mitochondrial respiration and a redistribution of electron transfer pathways, with an increase in the contribution of the alternative oxidase and rotenone-insensitive dehydrogenase. Changes in redox status and apparent oxidative stress may be necessary to the shift to adaptive metabolic pathways, ensuring normal mitochondrial function and ATP levels. The consumption of intracellular glutathione levels during the filamentation process may thus be the price paid by C. albicans for survival in the conditions encountered in the host. PMID:26461308

  5. Monitoring Changes in the Redox State of Myoglobin in Cardiomyocytes by Raman Spectroscopy Enables the Protective Effect of NO Donors to Be Evaluated.

    PubMed

    Almohammedi, Abdullah; Kapetanaki, Sofia M; Hudson, Andrew J; Storey, Nina M

    2015-10-20

    Raman microspectroscopy has been used to monitor changes in the redox and ligand-coordination states of the heme complex in myoglobin during the preconditioning of ex vivo cardiomyocytes with pharmacological drugs that release nitric oxide (NO). These chemical agents are known to confer protection on heart tissue against ischemia-reperfusion injury. Subsequent changes in the redox and ligand-coordination states during experimental simulations of ischemia and reperfusion have also been monitored. We found that these measurements, in real time, could be used to evaluate the preconditioning treatment of cardiomyocytes and to predict the likelihood of cell survival following a potentially lethal period of ischemia. Evaluation of the preconditioning treatment was done at the single-cell level. The binding of NO to myoglobin, giving a 6-coordinate ferrous-heme complex, was inferred from the measured Raman bands of a cardiomyocyte by comparison to pure solution of the protein in the presence of NO. A key change in the Raman spectrum was observed after perfusion of the NO-donor was completed, where, if the preconditioning treatment was successful, the bands corresponding to the nitrosyl complex were replaced by bands corresponding to metmyoglobin, Mb(III). An observation of Mb(III) bands in the Raman spectrum was made for all of the cardiomyocytes that recovered contractile function, whereas the absence of Mb(III) bands always indicated that the cardiomyocyte would be unable to recover contractile function following the simulated conditions of ischemia and reperfusion in these experiments. PMID:26407187

  6. Redox-dependent Structural Changes in Archaeal and Bacterial Rieske-type [2Fe-2S] Clusters

    SciTech Connect

    Cosper, N. J.

    2002-01-01

    Proteins containing Rieske-type [2Fe-2S] clusters play important roles in many biological electron transfer reactions. Typically, [2Fe-2S] clusters are not directly involved in the catalytic transformation of substrate, but rather supply electrons to the active site. We report herein X-ray absorption spectroscopic (XAS) data that directly demonstrate an average increase in the iron-histidine bond length of at least 0.1 {angstrom} upon reduction of two distantly related Rieske-type clusters in archaeal Rieske ferredoxin from Sulfolobus solfataricus strain P-1 and bacterial anthranilate dioxygenases from Acinetobacter sp. strain ADP1. This localized redox-dependent structural change may fine tune the protein-protein interaction (in the case of ARF) or the interdomain interaction (in AntDO) to facilitate rapid electron transfer between a lower potential Rieske-type cluster and its redox partners, thereby regulating overall oxygenase reactions in the cells.

  7. Changes in the redox state in the retina and brain during the onset of diabetes in rats.

    PubMed

    Salceda, R; Vilchis, C; Coffe, V; Hernández-Muñoz, R

    1998-06-01

    Diabetic retinopathy is thought to result from chronic changes in the metabolic pathways of the retina. Hyperglycemia leads to increased intracellular glucose concentrations, alterations in glucose degradation and an increase in lactate/pyruvate ratio. We measured lactate content in retina and other ocular and non-ocular tissues from normal and diabetic rats in the early stages of streptozotocin-induced diabetes. The intracellular redox state was calculated from the cytoplasmic [lactate]/[pyruvate] ratio. Elevated lactate concentration were found in retina and cerebral cortex from diabetic rats. These concentrations led to a significant and progressive decrease in the NAD+/NADH ratio, suggesting that altered glucose metabolism is an initial step of retinopathy. It is thus possible that tissues such as cerebral cortex have mechanisms that prevent the damaging effect of lactate produced by hyperglycemia and/or alterations of the intracellular redox state. PMID:9580389

  8. From climate change to molecular response: redox proteomics of ozone-induced responses in soybean

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Ozone (O3) causes significant agricultural losses with soybean being highly sensitive to this oxidant. Here we assess the effect of elevated seasonal O3 exposure on the total and redox proteomes of soybean. To understand the molecular responses to O3 exposure, soybean grown at the Soybean Free Air C...

  9. Biodegradation of fat, oil and grease (FOG) deposits under various redox conditions relevant to sewer environment.

    PubMed

    He, Xia; Zhang, Qian; Cooney, Michael J; Yan, Tao

    2015-07-01

    Fat, oil and, grease (FOG) deposits are one primary cause of sanitary sewer overflows (SSOs). While numerous studies have examined the formation of FOG deposits in sewer pipes, little is known about their biodegradation under sewer environments. In this study, FOG deposit biodegradation potential was determined by studying the biodegradation of calcium palmitate in laboratory under aerobic, nitrate-reducing, sulfate-reducing, and methanogenic conditions. Over 110 days of observation, calcium palmitate was biodegraded to CO2 under aerobic and nitrate-reducing conditions. An approximate 13 times higher CO2 production rate was observed under aerobic condition than under nitrate-reducing condition. Under sulfate-reducing condition, calcium palmitate was recalcitrant to biodegradation as evidenced by small reduction in sulfate. No evidence was found to support calcium palmitate degradation under methanogenic condition in the simulated sewer environment. Dominant microbial populations in the aerobic and nitrate-reducing microcosms were identified by Illumina seqeuncing, which may contain the capability to degrade calcium palmitate under both aerobic and nitrate-reducing conditions. Further study on these populations and their functional genes could shed more light on this microbial process and eventually help develop engineering solutions for SSOs control in the future. PMID:25715780

  10. Resveratrol and N-acetylcysteine influence redox balance in equine articular chondrocytes under acidic and very low oxygen conditions

    PubMed Central

    Collins, John A.; Moots, Robert J.; Clegg, Peter D.; Milner, Peter I.

    2015-01-01

    Mature articular cartilage is an avascular tissue characterized by a low oxygen environment. In joint disease, acidosis and further reductions in oxygen levels occur, compromising cartilage integrity.This study investigated how acidosis and very low oxygen levels affect components of the cellular redox system in equine articular chondrocytesand whether the antioxidants resveratrol and N-acetylcysteine could modulate this system. We used articular chondrocytes isolated from nondiseased equine joints and cultured them in a 3-D alginate bead system for 48 h in <1, 2, 5, and 21% O2 at pH 7.2 or 6.2 in the absence or presence of the proinflammatory cytokine, interleukin-1β (10 ng/ml).In addition, chondrocytes were cultured with resveratrol (10 µM) or N-acetylcysteine (NAC) (2 mM).Cell viability, glycosaminoglycan (GAG) release, mitochondrial membrane potential (ΔΨm), reactive oxygen species (ROS), GSH:GSSG ratio, and SOD1 and SOD2 protein expression were measured. Very low levels of oxygen (<1%), acidosis (pH 6.2), and exposure to IL-1β led to reductions in cell viability, increased GAG release, alterations in ΔΨm and ROS levels, and reduced GSH:GSSG ratio. In addition, SOD1 and SOD2 protein expressions were reduced. Both resveratrol and NAC partially restored ΔΨm and ROS levels and prevented GAG release and cell loss and normalized SOD1 and SOD2 protein expression. In particular NAC was highly effective at restoring the GSH:GSSG ratio.These results show that the antioxidants resveratrol and N-acetylcysteine can counteract the redox imbalance in articular chondrocytes induced by low oxygen and acidic conditions. PMID:25998424

  11. Redox chemistry of the molecular interactions between tea catechins and human serum proteins under simulated hyperglycemic conditions.

    PubMed

    Özyurt, Hazal; Luna, Carolina; Estévez, Mario

    2016-03-01

    Carbonylation is an irreversible modification in oxidized proteins that has been directly related to a number of health disorders including Type 2 diabetes. Dietary antioxidants have been proposed to counteract the oxidative stress occurring under hyperglycemic conditions. An understanding of the nature and consequences of the molecular interactions between phytochemicals and human plasma proteins is of utmost scientific interest. Three tea catechins namely epicatechin (EC), epigallocatechin (EGC) and epigallocatechin-3-gallate (EGCG) were tested for (i) their affinity to bind to human serum albumin (HSA) and human hemoglobin (HH) and (ii) their ability to inhibit tryptophan (Trp) depletion and for the formation of specific protein carbonyls and pentosidine in the aforementioned proteins. Both proteins (20 mg mL(-1)) were allowed to react with postprandial plasmatic concentrations of the catechins (EC: 0.7 μM, EGC: 1.8 μM, and EGCG: 0.7 μM) under simulated hyperglycemic conditions (12 mM glucose/0.2 mM Fe(3+)/37 °C/10 days). The three catechins were able to inhibit Trp oxidation and protein carbonylation in both plasma proteins. Some anti-glycation properties were linked to their binding affinities. The molecular interactions reported in the present study may explain the alleged beneficial effects of tea catechins against the redox impairment linked to hyperglycemic conditions. PMID:26839039

  12. Conditioned Reinforcement Value and Resistance to Change

    ERIC Educational Resources Information Center

    Shahan, Timothy A.; Podlesnik, Christopher A.

    2008-01-01

    Three experiments examined the effects of conditioned reinforcement value and primary reinforcement rate on resistance to change using a multiple schedule of observing-response procedures with pigeons. In the absence of observing responses in both components, unsignaled periods of variable-interval (VI) schedule food reinforcement alternated with…

  13. GLOBAL CHANGE EFFECTS ON CORAL REEF CONDITION

    EPA Science Inventory

    Fisher, W., W. Davis, J. Campbell, L. Courtney, P. Harris, B. Hemmer, M. Parsons, B. Quarles and D. Santavy. In press. Global Change Effects on Coral Reef Condition (Abstract). To be presented at the EPA Science Forum: Healthy Communities and Ecosystems, 1-3 June 2004, Washington...

  14. Mitochondria and Redox Signaling in Steatohepatitis

    PubMed Central

    Morris, E. Matthew; Rector, R. Scott; Thyfault, John P.

    2011-01-01

    Abstract Alcoholic and nonalcoholic fatty liver diseases are potentially pathological conditions that can progress to steatohepatitis, fibrosis, and cirrhosis. These conditions affect millions of people throughout the world in part through poor lifestyle choices of excess alcohol consumption, overnutrition, and lack of regular physical activity. Abnormal mitochondrial and cellular redox homeostasis has been documented in steatohepatitis and results in alterations of multiple redox-sensitive signaling cascades. Ultimately, these changes in signaling lead to altered enzyme function and transcriptional activities of proteins critical to mitochondrial and cellular function. In this article, we review the current hypotheses linking mitochondrial redox state to the overall pathophysiology of alcoholic and nonalcoholic steatohepatitis and briefly discuss the current therapeutic options under investigation. Antioxid. Redox Signal. 15, 485–504. PMID:21128703

  15. Conditioned Reinforcement Value and Resistance to Change

    PubMed Central

    Shahan, Timothy A; Podlesnik, Christopher A

    2008-01-01

    Three experiments examined the effects of conditioned reinforcement value and primary reinforcement rate on resistance to change using a multiple schedule of observing-response procedures with pigeons. In the absence of observing responses in both components, unsignaled periods of variable-interval (VI) schedule food reinforcement alternated with extinction. Observing responses in both components intermittently produced 15 s of a stimulus associated with the VI schedule (i.e., S+). In the first experiment, a lower-valued conditioned reinforcer and a higher rate of primary reinforcement were arranged in one component by adding response-independent food deliveries uncorrelated with S+. In the second experiment, one component arranged a lower valued conditioned reinforcer but a higher rate of primary reinforcement by increasing the probability of VI schedule periods relative to extinction periods. In the third experiment, the two observing-response components provided similar rates of primary reinforcement but arranged different valued conditioned reinforcers. Across the three experiments, observing-response rates were typically higher in the component associated with the higher valued conditioned reinforcer. Resistance to change was not affected by conditioned reinforcement value, but was an orderly function of the rate of primary reinforcement obtained in the two components. One interpretation of these results is that S+ value does not affect response strength and that S+ deliveries increase response rates through a mechanism other than reinforcement. Alternatively, because resistance to change depends on the discriminative stimulus–reinforcer relation, the failure of S+ value to impact resistance to change could have resulted from a lack of transfer of S+ value to the broader discriminative context. PMID:18540215

  16. How Escherichia coli Is Equipped to Oxidize Hydrogen under Different Redox Conditions*

    PubMed Central

    Lukey, Michael J.; Parkin, Alison; Roessler, Maxie M.; Murphy, Bonnie J.; Harmer, Jeffrey; Palmer, Tracy; Sargent, Frank; Armstrong, Fraser A.

    2010-01-01

    The enterobacterium Escherichia coli synthesizes two H2 uptake enzymes, Hyd-1 and Hyd-2. We show using precise electrochemical kinetic measurements that the properties of Hyd-1 and Hyd-2 contrast strikingly, and may be individually optimized to function under distinct environmental conditions. Hyd-2 is well suited for fast and efficient catalysis in more reducing environments, to the extent that in vitro it behaves as a bidirectional hydrogenase. In contrast, Hyd-1 is active for H2 oxidation under more oxidizing conditions and cannot function in reverse. Importantly, Hyd-1 is O2 tolerant and can oxidize H2 in the presence of air, whereas Hyd-2 is ineffective for H2 oxidation under aerobic conditions. The results have direct relevance for physiological roles of Hyd-1 and Hyd-2, which are expressed in different phases of growth. The properties that we report suggest distinct technological applications of these contrasting enzymes. PMID:19917611

  17. Conformational Change Near the Redox Center of Dihydrolipoamide Dehydrogenase Induced by NAD(+) to Regulate the Enzyme Activity.

    PubMed

    Fukamichi, Tomoe; Nishimoto, Etsuko

    2015-05-01

    Dihydrolipoamide dehydrogenase (LipDH) transfers two electrons from dihydrolipoamide (DHL) to NAD(+) mediated by FAD. Since this reaction is the final step of a series of catalytic reaction of pyruvate dehydrogenase multi-enzyme complex (PDC), LipDH is a key enzyme to maintain the fluent metabolic flow. We reported here the conformational change near the redox center of LipDH induced by NAD(+) promoting the access of the DHL to FAD. The increase in the affinity of DHL to redox center was evidenced by the decrease in K M responding to the increase in the concentration of NAD(+) in Lineweaver-Burk plots. The fluorescence intensity of FAD transiently reduced by the addition of DHL was not recovered but rather reduced by the binding of NAD(+) with LipDH. The fluorescence decay lifetimes of FAD and Trp were prolonged in the presence of NAD(+) to show that FAD would be free from the electron transfer from the neighboring Tyrs and the resonance energy transfer efficiency between Trp and FAD lowered. These results consistently reveal that the conformation near the FAD and the surroundings would be so rearranged by NAD(+) to allow the easier access of DHL to the redox center of LipDH. PMID:25757537

  18. Redox-sensitive structural change in the A-domain of HMGB1 and its implication for the binding to cisplatin modified DNA

    SciTech Connect

    Wang, Jing; Tochio, Naoya; Takeuchi, Aya; Uewaki, Jun-ichi; Research Center for the Mathematics on Chromatin Live Dynamics , Graduate School of Science, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima 739-8526 ; Kobayashi, Naohiro; Tate, Shin-ichi; Research Center for the Mathematics on Chromatin Live Dynamics , Graduate School of Science, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima 739-8526

    2013-11-29

    Highlights: •The structure of the oxidized A-domain of human HMGB1 was solved. •Phe38 ring was flipped in the oxidized structure from that in the reduced form. •The flipped ring disables the intercalation into the cisplatinated lesions. •The functionally relevant redox-dependent structural change was described. -- Abstract: HMGB1 (high-mobility group B1) is a ubiquitously expressed bifunctional protein that acts as a nuclear protein in cells and also as an inflammatory mediator in the extracellular space. HMGB1 changes its functions according to the redox states in both intra- and extra-cellular environments. Two cysteines, Cys23 and Cys45, in the A-domain of HMGB1 form a disulfide bond under oxidative conditions. The A-domain with the disulfide bond shows reduced affinity to cisplatin modified DNA. We have solved the oxidized A-domain structure by NMR. In the structure, Phe38 has a flipped ring orientation from that found in the reduced form; the phenyl ring in the reduced form intercalates into the platinated lesion in DNA. The phenyl ring orientation in the oxidized form is stabilized through intramolecular hydrophobic contacts. The reorientation of the Phe38 ring by the disulfide bond in the A-domain may explain the reduced HMGB1 binding affinity towards cisplatinated DNA.

  19. Effect of redox conditions on MTBE biodegradation in surface water Sediments

    USGS Publications Warehouse

    Bradley, P.M.; Chapelle, F.H.; Landmeyer, J.E.

    2001-01-01

    Microbial degradation of methyl tert-butyl ether (MTBE) was observed in surface water-sediment microcosms under anaerobic conditions. The efficiency and products of anaerobic MTBE biodegradation were dependent on the predominant terminal electron-accepting conditions. In the presence of substantial methanogenic activity, MTBE biodegradation was nominal and involved reduction of MTBE to the toxic product, tert-butyl alcohol (TBA). In the absence of significant methanogenic activity, accumulation of [14C]TBA generally decreased, and mineralization of [U-14C]MTBE to 14CO2 generally increased as the oxidative potential of the predominant terminal electron acceptor increased in the order of SO4, Fe(III), Mn(IV) < NO3 < O2. Microbial mineralization of MTBE to CO2 under Mn(IV)or SO4-reducing conditions has not been reported previously. The results of this study indicate that microorganisms inhabiting the sediments of streams and lakes can degrade MTBE effectively under a range of anaerobic terminal electron-accepting conditions. Thus, anaerobic bed sediment microbial processes may provide a significant environmental sink for MTBE in surface water systems throughout the United States.

  20. Redox change during magma ascent; Observation from three volcanoes and implication for gas monitoring

    NASA Astrophysics Data System (ADS)

    Moussallam, Yves; Oppenheimer, Clive; Schipper, Ian C.; Hartley, Magaret; Scaillet, Bruno; Gaillard, Fabrice; Peters, Nial; Kyle, Phil

    2015-04-01

    The oxidation state of volcanic gases dictates their speciation and hence their reactivity in the atmosphere. It has become increasingly recognized that the oxidation state of a magma can be strongly affected by degassing. The oxidation state of gases will equally be impacted and the composition of gases emitted by volcanoes will therefore be function of the magma degassing history. This presentation will show results from three volcanoes where the oxidation state of the magma has been tracked during degassing. At Erebus and Laki we used Fe X-ray absorption near-edge structure spectroscopy (XANES) on extensive suites of melt inclusions and glasses, while at Surtsey we used S-Kα peak shifts measurements by electron microprobe (EPMA) on melt inclusions, embayment and glasses. At all three locations we found that a strong reduction of both Fe and S is associated with magma ascent. At Erebus this reduction is greatest, corresponding to a fall in magmatic fO2 of more than two log units. We propose that sulfur degassing can explain the observed evolution of the redox state with ascent and show that forward modeling using initial melt composition can successfully predict the composition of the gas phase measured at the surface. We suggest that the redox state of volcanic gases (expressed in term of redox couples: H2O/H2, SO2/H2S and CO2/CO) can be used to monitor the depth of gas-melt segregation at active volcanoes.

  1. The effects of water radiolysis on local redox conditions in the Oklo, Gabon, natural fission reactors 10 and 16

    SciTech Connect

    Savary, V.; Pagel, M.

    1997-11-01

    In an underground nuclear waste repository, the chemical behavior of some stored fission products and actinides depends on the redox conditions during their long-term evolution. In this respect, radiolysis is an important phenomenon which can significantly modify the local redox conditions. The Oklo natural fission zones are good examples where the effect of radiolysis can be deduced from a mineralogical and geochemical study. Zones 10 and 16 were studied because they are located at depth of 270 m in an area devoid of any recent water circulation and not subject to the effect of the lateritic alteration occurring elsewhere in this area. In zone 10, there is a marked evolution of the U-Pb-Fe-S mineralogy from the center to the periphery of the reactor zone. In the center, uraninite shows silicification and coffinitisation with the formation of galena and native lead; the PbO content of uraninite can be as much as 20 wt%. In the periphery of the reactor zone, some radiogenic lead is present as minimum (Pb{sub 3}O{sub 4}) and in Pb-bearing calcite. In the surrounding sandstones, hematite is widespread. In zone 16, the mineral paragenesis is generally comparable with that of zone 10 but with some differences. Galena is the only Pb-bearing mineral associated with uraninite crystals. The PbO content of uraninite is always <7 wt%. In the periphery of the alteration zone, barite partly replaces quartz. In the reactor zone, hematite is sometimes replaced by pyrite. In an area where the fission zone 10 is in contact with sandstones devoid of organic matter, H{sub 2}O-H{sub 2} {+-} CH{sub 4} inclusions were observed in healed microcracks in the detrital quartz grains. Based on microthermometric measurements, the salinity of the aqueous solution ranges from 0.2 to 18 wt% eq. NaCl. Raman analysis of the gas phase indicates that the hydrogen to oxygen ratio differs from an inclusion to the other. 41 refs., 15 figs., 3 tabs.

  2. Influence of redox conditions on the intensity of Mars crustal magnetic anomalies

    NASA Astrophysics Data System (ADS)

    Brachfeld, Stefanie; Shah, Deepa; First, Emily; Hammer, Julia; Bowles, Julie

    2015-10-01

    We evaluate the relationship between the intensity of remanent magnetization and fO2 in natural and synthetic Mars meteorites. The olivine-phyric shergottite meteorite Yamato 980459 (Y-980459) and a sulfur-free synthetic analog (Y-98*) of identical major element composition were analyzed to explore the rock magnetic and remanence properties of a basalt crystallized from a primitive melt, and to explore the role of magmatic and alteration environment fO2 on Mars crustal anomalies. The reducing conditions under which Y-980459 is estimated to have formed (QFM-2.5; Shearer et al. 2006) were replicated during the synthesis of Y-98*. Y-980459 contains pyrrhotite and chromite. Chromite is the only magnetic phase in Y-98*. The remanence-carrying capacity of Y-980459 is comparable to other shergottites that formed in the fO2 range of QFM-3 to QFM-1. The remanence-carrying capacity of these low fO2 basalts is 1-2 orders of magnitude too weak to account for the intense crustal anomalies observed in Mars's southern cratered highlands. Moderately oxidizing conditions of >QFM-1, which are more commonly observed in nakhlites and Noachian breccias, are key to generating either a primary igneous assemblage or secondary alteration assemblage capable of acquiring an intense remanent magnetization, regardless of the basalt character or thermal history. This suggests that if igneous rocks are responsible for the intensely magnetized crust, these oxidizing conditions must have existed in the magmatic plumbing systems of early Mars or must have existed in the crust during secondary processes that led to acquisition of a chemical remanent magnetization.

  3. Effect of H2 and redox condition on biotic and abiotic MTBE transformation

    USGS Publications Warehouse

    Bradley, P.M.; Chapelle, F.H.; Landmeyer, J.E.

    2006-01-01

    Laboratory studies conducted with surface water sediment from a methyl tert-butyl ether (MTBE)-contaminated site in South Carolina demonstrated that, under methanogenic conditions, [U-14C] MTBE was transformed to 14C tert-butyl alcohol (TBA) with no measurable production of 14CO2. Production of TBA was not attributed to the activity of methanogenic microorganisms, however, because comparable transformation of [U-14C] MTBE to 14C-TBA also was observed in heat-sterilized controls with dissolved H2 concentrations > 5 nM. The results suggest that the transformation of MTBE to TBA may be an abiotic process that is driven by biologically produced H2 under in situ conditions. In contrast, mineralization of [U-14C] MTBE to 14CO2 was completely inhibited by heat sterilization and only observed in treatments characterized by dissolved H2 concentrations < 2 nM. These results suggest that the pathway of MTBE transformation is influenced by in situ H2 concentrations and that in situ H2 concentrations may be an useful indicator of MTBE transformation pathways in ground water systems.

  4. Effect of ozone pre-conditioning on redox activity in a rat model of septic shock.

    PubMed

    Guanche, Dailen; Hernandez, Frank; Zamora, Zullyt; Alonso, Yaima

    2010-10-01

    The confirmed advantageous effects of oxygen/ozone therapy in several clinical conditions stimulated experimental studies on effects of the therapy in induced septic shock. This study researches the influence of Ozone Oxidative Pre-conditioning (OOP) in unbalance between pro-oxidant and antioxidant activity generated in liver and lung during a process of sepsis. The study was conducted on male rats. Sepsis was induced by intraperitoneal injection of fecal material and pre-treatment with ozone/oxygen mixture was administered before fecal material injection. Activities of catalase, glutathione peroxide, and superoxide dismutase were measured, as well as conjugated dienes (CD) and thiobarbituric acid reactive substances (TBARS) were estimated. The results demonstrated that OOP not cause oxidative damage. It reduced levels of pro-oxidant biomarkers in lung and liver, with decreased total pro-oxidant activity and elevated total antioxidant activity from a system for diagnosis of oxidative stress in both tissues. These results suggest that OOP protected liver and lung for oxidative stress in septic shock. PMID:20626256

  5. Redox-induced changes in flavin structure and roles of flavin N(5) and the ribityl 2'-OH group in regulating PutA--membrane binding.

    PubMed

    Zhang, Weimin; Zhang, Min; Zhu, Weidong; Zhou, Yuzhen; Wanduragala, Srimevan; Rewinkel, Dustin; Tanner, John J; Becker, Donald F

    2007-01-16

    PutA is a novel flavoprotein in Escherichia coli that switches from a transcriptional repressor to a membrane-bound proline catabolic enzyme. Previous crystallographic studies of the PutA proline dehydrogenase (PRODH) domain under oxidizing conditions revealed that FAD N(5) and the ribityl 2'-OH group form hydrogen bonds with Arg431 and Arg556, respectively. Here we identify molecular interactions in the PutA PRODH active site that underlie redox-dependent functional switching of PutA. We report that reduction of the PRODH domain induces major structural changes in the FAD cofactor, including a 22 degrees bend of the isoalloxazine ring along the N(5)-N(10) axis, crankshaft rotation of the upper part of the ribityl chain, and formation of a new hydrogen bond network involving the ribityl 2'-OH group, FAD N(1), and Gly435. The roles of the FAD 2'-OH group and the FAD N(5)-Arg431 hydrogen bond pair in regulating redox-dependent PutA-membrane associations were tested using FAD analogues and site-directed mutagenesis. Kinetic membrane binding measurements and cell-based reporter gene assays of modified PutA proteins show that disrupting the FAD N(5)-Arg431 interaction impairs the reductive activation of PutA-membrane binding. We also show that the FAD 2'-OH group acts as a redox-sensitive toggle switch that controls PutA-membrane binding. These results illustrate a new versatility of the ribityl chain in flavoprotein mechanisms. PMID:17209558

  6. Phosphorus recycling and burial in Baltic Sea sediments with contrasting redox conditions

    NASA Astrophysics Data System (ADS)

    Slomp, Caroline P.; Mort, Haydon P.; Reed, Dan C.; Jilbert, Tom; Gustafsson, Bo G.

    2010-05-01

    The Baltic Sea is a classical example of a coastal system that is subject to an increased intensity and spatial extent of hypoxia due to human activities. The expansion of hypoxia since the 1960s is the result of increased inputs of nutrients from land (both from fertilizer and wastewater) and is negatively affecting living conditions for benthic organisms. In addition, the biogeochemical cycling of carbon and nutrients has been significantly altered. Water column studies have shown that the availability of dissolved inorganic phosphorus (DIP) is positively correlated with hypoxia due to release of phosphorus from sediment Fe-oxides and from organic matter upon the transition from oxic to hypoxic conditions. Thus, a large internal source of phosphorus exists in the sediment that largely controls short-term variability in water column DIP concentrations. In this presentation, we focus on results of recent field and modeling work for various parts of the Baltic Sea that confirm the role of Fe-bound P from seasonally hypoxic sediments at intermediate water depths as a major source of DIP. We also show that extended hypoxia and anoxia leads to depletion of sediment Fe-bound P and, ultimately, lower rates of sediment-water exchange of P. Authigenic Ca-P minerals appear to be only a relatively minor burial sink for P. The lack of major inorganic P burial makes the Baltic Sea sensitive to the feedback loop between increased hypoxia, enhanced regeneration of P and increased primary productivity. Historical records of bottom water oxygen at two sites (Bornholm, Northern Gotland) show a decline over the past century which is accompanied by a rise in values of typical sediment proxies for anoxia (total sulfur, molybdenum and organic C/P ratios). While sediment reactive P concentrations in anoxic basins are equal to or higher than at oxic sites, burial rates of P at hypoxic and anoxic sites are up to 20 times lower because of lower sedimentation rates. Nevertheless, burial of

  7. Salt Stress Affects the Redox Status of Arabidopsis Root Meristems

    PubMed Central

    Jiang, Keni; Moe-Lange, Jacob; Hennet, Lauriane; Feldman, Lewis J.

    2016-01-01

    We report the redox status (profiles) for specific populations of cells that comprise the Arabidopsis root tip. For recently germinated, 3–5-day-old seedlings we show that the region of the root tip with the most reduced redox status includes the root cap initials, the quiescent center and the most distal portion of the proximal meristem, and coincides with (overlays) the region of the auxin maximum. As one moves basally, further into the proximal meristem, and depending on the growth conditions, the redox status becomes more oxidized, with a 5–10 mV difference in redox potential between the two borders delimiting the proximal meristem. At the point on the root axis at which cells of the proximal meristem cease division and enter the transition zone, the redox potential levels off, and remains more or less unchanged throughout the transition zone. As cells leave the transition zone and enter the zone of elongation the redox potentials become more oxidized. Treating roots with salt (50, 100, and 150 mM NaCl) results in marked changes in root meristem structure and development, and is preceded by changes in the redox profile, which flattens, and initially becomes more oxidized, with pronounced changes in the redox potentials of the root cap, the root cap initials and the quiescent center. Roots exposed to relatively mild levels of salt (<100 mM) are able to re-establish a normal, pre-salt treatment redox profile 3–6 days after exposure to salt. Coincident with the salt-associated changes in redox profiles are changes in the distribution of auxin transporters (AUX1, PIN1/2), which become more diffuse in their localization. We conclude that salt stress affects root meristem maintenance, in part, through changes in redox and auxin transport. PMID:26904053

  8. Permeable Reactive Barriers Designed To Mitigate Eutrophication Alter Bacterial Community Composition and Aquifer Redox Conditions.

    PubMed

    Hiller, Kenly A; Foreman, Kenneth H; Weisman, David; Bowen, Jennifer L

    2015-10-01

    Permeable reactive barriers (PRBs) consist of a labile carbon source that is positioned to intercept nitrate-laden groundwater to prevent eutrophication. Decomposition of carbon in the PRB drives groundwater anoxic, fostering microbial denitrification. Such PRBs are an ideal habitat to examine microbial community structure under high-nitrate, carbon-replete conditions in coastal aquifers. We examined a PRB installed at the Waquoit Bay National Estuarine Research Reserve in Falmouth, MA. Groundwater within and below the PRB was depleted in oxygen compared to groundwater at sites upgradient and at adjacent reference sites. Nitrate concentrations declined from a high of 25 μM upgradient and adjacent to the barrier to <0.1 μM within the PRB. We analyzed the total and active bacterial communities filtered from groundwater flowing through the PRB using amplicons of 16S rRNA and of the 16S rRNA genes. Analysis of the 16S rRNA genes collected from the PRB showed that the total bacterial community had high relative abundances of bacteria thought to have alternative metabolisms, such as fermentation, including candidate phyla OD1, OP3, TM7, and GN02. In contrast, the active bacteria had lower abundances of many of these bacteria, suggesting that the bacterial taxa that differentiate the PRB groundwater community were not actively growing. Among the environmental variables analyzed, dissolved oxygen concentration explained the largest proportion of total community structure. There was, however, no significant correlation between measured environmental parameters and the active microbial community, suggesting that controls on the active portion may differ from the community as a whole. PMID:26231655

  9. Permeable Reactive Barriers Designed To Mitigate Eutrophication Alter Bacterial Community Composition and Aquifer Redox Conditions

    PubMed Central

    Hiller, Kenly A.; Foreman, Kenneth H.; Weisman, David

    2015-01-01

    Permeable reactive barriers (PRBs) consist of a labile carbon source that is positioned to intercept nitrate-laden groundwater to prevent eutrophication. Decomposition of carbon in the PRB drives groundwater anoxic, fostering microbial denitrification. Such PRBs are an ideal habitat to examine microbial community structure under high-nitrate, carbon-replete conditions in coastal aquifers. We examined a PRB installed at the Waquoit Bay National Estuarine Research Reserve in Falmouth, MA. Groundwater within and below the PRB was depleted in oxygen compared to groundwater at sites upgradient and at adjacent reference sites. Nitrate concentrations declined from a high of 25 μM upgradient and adjacent to the barrier to <0.1 μM within the PRB. We analyzed the total and active bacterial communities filtered from groundwater flowing through the PRB using amplicons of 16S rRNA and of the 16S rRNA genes. Analysis of the 16S rRNA genes collected from the PRB showed that the total bacterial community had high relative abundances of bacteria thought to have alternative metabolisms, such as fermentation, including candidate phyla OD1, OP3, TM7, and GN02. In contrast, the active bacteria had lower abundances of many of these bacteria, suggesting that the bacterial taxa that differentiate the PRB groundwater community were not actively growing. Among the environmental variables analyzed, dissolved oxygen concentration explained the largest proportion of total community structure. There was, however, no significant correlation between measured environmental parameters and the active microbial community, suggesting that controls on the active portion may differ from the community as a whole. PMID:26231655

  10. Single-cell sequencing of Thiomargarita reveals genomic flexibility for adaptation to dynamic redox conditions

    DOE PAGESBeta

    Winkel, Matthias; Salman-Carvalho, Verena; Woyke, Tanja; Richter, Michael; Schulz-Vogt, Heide N.; Flood, Beverly E.; Bailey, Jake V.; Mußmann, Marc

    2016-06-21

    Large, colorless sulfur-oxidizing bacteria (LSB) of the family Beggiatoaceae form thick mats at sulfidic sediment surfaces, where they efficiently detoxify sulfide before it enters the water column. The genus Thiomargarita harbors the largest known free-living bacteria with cell sizes of up to 750 μm in diameter. In addition to their ability to oxidize reduced sulfur compounds, some Thiornargarita spp. are known to store large amounts of nitrate, phosphate and elemental sulfur internally. To date little is known about their energy yielding metabolic pathways, and how these pathways compare to other Beggiatoaceae. Here, we present a draft single-cell genome of amore » chain-forming "Candidatus Thiomargarita nelsonii Thio36", and conduct a comparative analysis to five draft and one full genome of other members of the Beggiatoaceae. "Ca. T. nelsonii Thio36" is able to respire nitrate to both ammonium and dinitrogen, which allows them to flexibly respond to environmental changes. Genes for sulfur oxidation and inorganic carbon fixation confirmed that "Ca. T. nelsonii Thio36" can function as a chemolithoautotroph. Carbon can be fixed via the Calvin-Benson-Bassham cycle, which is common among the Beggiatoaceae. In addition we found key genes of the reductive tricarboxylic acid cycle that point toward an alternative CO2 fixation pathway. Surprisingly, "Ca. T. nelsonii Thio36" also encodes key genes of the C2-cycle that convert 2-phosphoglycolate to 3-phosphoglycerate during photorespiration in higher plants and cyanobacteria. Moreover, we identified a novel trait of a flavin-based energy bifurcation pathway coupled to a Na+-translocating membrane complex (Rnf). The coupling of these pathways may be key to surviving long periods of anoxia. As other Beggiatoaceae "Ca. T. nelsonii Thio36" encodes many genes similar to those of (filamentous) cyanobacteria. In conclusion, the genome of "Ca. T. nelsonii Thio36" provides additional insight into the ecology of giant sulfur

  11. Single-cell Sequencing of Thiomargarita Reveals Genomic Flexibility for Adaptation to Dynamic Redox Conditions

    PubMed Central

    Winkel, Matthias; Salman-Carvalho, Verena; Woyke, Tanja; Richter, Michael; Schulz-Vogt, Heide N.; Flood, Beverly E.; Bailey, Jake V.; Mußmann, Marc

    2016-01-01

    Large, colorless sulfur-oxidizing bacteria (LSB) of the family Beggiatoaceae form thick mats at sulfidic sediment surfaces, where they efficiently detoxify sulfide before it enters the water column. The genus Thiomargarita harbors the largest known free-living bacteria with cell sizes of up to 750 μm in diameter. In addition to their ability to oxidize reduced sulfur compounds, some Thiomargarita spp. are known to store large amounts of nitrate, phosphate and elemental sulfur internally. To date little is known about their energy yielding metabolic pathways, and how these pathways compare to other Beggiatoaceae. Here, we present a draft single-cell genome of a chain-forming “Candidatus Thiomargarita nelsonii Thio36”, and conduct a comparative analysis to five draft and one full genome of other members of the Beggiatoaceae. “Ca. T. nelsonii Thio36” is able to respire nitrate to both ammonium and dinitrogen, which allows them to flexibly respond to environmental changes. Genes for sulfur oxidation and inorganic carbon fixation confirmed that “Ca. T. nelsonii Thio36” can function as a chemolithoautotroph. Carbon can be fixed via the Calvin–Benson–Bassham cycle, which is common among the Beggiatoaceae. In addition we found key genes of the reductive tricarboxylic acid cycle that point toward an alternative CO2 fixation pathway. Surprisingly, “Ca. T. nelsonii Thio36” also encodes key genes of the C2-cycle that convert 2-phosphoglycolate to 3-phosphoglycerate during photorespiration in higher plants and cyanobacteria. Moreover, we identified a novel trait of a flavin-based energy bifurcation pathway coupled to a Na+-translocating membrane complex (Rnf). The coupling of these pathways may be key to surviving long periods of anoxia. As other Beggiatoaceae “Ca. T. nelsonii Thio36” encodes many genes similar to those of (filamentous) cyanobacteria. In summary, the genome of “Ca. T. nelsonii Thio36” provides additional insight into the ecology of

  12. Single-cell Sequencing of Thiomargarita Reveals Genomic Flexibility for Adaptation to Dynamic Redox Conditions.

    PubMed

    Winkel, Matthias; Salman-Carvalho, Verena; Woyke, Tanja; Richter, Michael; Schulz-Vogt, Heide N; Flood, Beverly E; Bailey, Jake V; Mußmann, Marc

    2016-01-01

    Large, colorless sulfur-oxidizing bacteria (LSB) of the family Beggiatoaceae form thick mats at sulfidic sediment surfaces, where they efficiently detoxify sulfide before it enters the water column. The genus Thiomargarita harbors the largest known free-living bacteria with cell sizes of up to 750 μm in diameter. In addition to their ability to oxidize reduced sulfur compounds, some Thiomargarita spp. are known to store large amounts of nitrate, phosphate and elemental sulfur internally. To date little is known about their energy yielding metabolic pathways, and how these pathways compare to other Beggiatoaceae. Here, we present a draft single-cell genome of a chain-forming "Candidatus Thiomargarita nelsonii Thio36", and conduct a comparative analysis to five draft and one full genome of other members of the Beggiatoaceae. "Ca. T. nelsonii Thio36" is able to respire nitrate to both ammonium and dinitrogen, which allows them to flexibly respond to environmental changes. Genes for sulfur oxidation and inorganic carbon fixation confirmed that "Ca. T. nelsonii Thio36" can function as a chemolithoautotroph. Carbon can be fixed via the Calvin-Benson-Bassham cycle, which is common among the Beggiatoaceae. In addition we found key genes of the reductive tricarboxylic acid cycle that point toward an alternative CO2 fixation pathway. Surprisingly, "Ca. T. nelsonii Thio36" also encodes key genes of the C2-cycle that convert 2-phosphoglycolate to 3-phosphoglycerate during photorespiration in higher plants and cyanobacteria. Moreover, we identified a novel trait of a flavin-based energy bifurcation pathway coupled to a Na(+)-translocating membrane complex (Rnf). The coupling of these pathways may be key to surviving long periods of anoxia. As other Beggiatoaceae "Ca. T. nelsonii Thio36" encodes many genes similar to those of (filamentous) cyanobacteria. In summary, the genome of "Ca. T. nelsonii Thio36" provides additional insight into the ecology of giant sulfur

  13. Redox states of underground brine system along the southern coast of the Laizhou Bay

    NASA Astrophysics Data System (ADS)

    Jiang, Xueyan; Yu, Zhigang; Ning, Jinsong; Chen, Hongtao; Mi, Tiezhu

    2008-05-01

    Underground brine samples were collected along the southern coast of the Laizhou Bay, Shangdong, China in two field investigations in 2003. The brines are confined in the Quaternary sediment and underwent a series of geochemical changes. The redox states of these brines were assessed qualitatively based on the measurements of Eh and redox-sensitive species such as DO, NO NO{3/-}, Mn2+, Fe2+, SO{4/2-} in the brines. The redox condition of the underground brine is anoxic, and the redox reactions that controlled the redox potential of brines should be Fe(III) reduction and sulfate reduction.

  14. Morphology Changing at Incipient Crystallization Condition

    NASA Astrophysics Data System (ADS)

    Toshima, Takeshi; Hamai, Ryo; Fujita, Saya; Takemura, Yuka; Takamatsu, Saori; Tafu, Masamoto

    2015-04-01

    Brushite (Dicalcium phosphate dihydrate, (DCPD), CaHPO4·2H2O) is one of key components in calcium phosphate system due to wide attractive material not only as bioceramics but also environmental materials. Morphology of DCPD crystals is important factor when one uses its functionality with chemical reaction; because its surface crystal face, shape and size rule the chemical reactivity, responsiveness. Moreover, physical properties are also changed the morphology; such as cohesion, dispersiveness, permeability and so on. If one uses DCPD crystals as environmental renovation materials to catch the fluoride ions, their shape require 020 crystal surfaces; which usually restricts their shape as plate-like structure. After the chemical reaction, the shape of sludge is not good for handling due to their agglutinate property. Therefore searching an effective parameter and developing the method to control the morphology of DCPD crystals is required. In past, we reported that initial concentration and pH value of starting solution, prepared by dissolving calcium nitrate, Ca(NO3)2 and ammonium dihydrogen phosphate, NH4H2PO4, changes the morphology of DCPD crystals and phase diagram of morphology of DCPD crystal depend on those parameter. The DCPD crystallization shows unique behaviour; products obtained higher initial concentration form single crystal-like structure and under lower condition, they form agglomerate crystal-like structure. These results contradict usual crystallization. Here we report that the effect of mixing process of two solutions. The morphology of DCPD crystals is changed from plate structure to petal structure by the arrangement. Our result suggests that morphology of DCPD crystals strongly depends at incipient crystallization condition and growth form is controllable by setting initial crystallization condition.

  15. Manipulation of microbial extracellular electron transfer by changing molecular structure of phenazine-type redox mediators.

    PubMed

    Chen, Jie-Jie; Chen, Wei; He, Hui; Li, Dao-Bo; Li, Wen-Wei; Xiong, Lu; Yu, Han-Qing

    2013-01-15

    Phenazines, as a type of electron shuttle, are involved in various biological processes to facilitate microbial energy metabolism and electron transfer. They constitute a large group of nitrogen-containing heterocyclic compounds, which can be produced by a diverse range of bacteria or by artificial synthesis. They vary significantly in their properties, depending mainly on the nature and position of substitutent group. Thus, it is of great interest to find out the most favorable substituent type and molecular structure of phenazines for electron transfer routes. Here, the impacts of the substituent group on the reduction potentials of phenazine-type redox mediators in aqueous solution were investigated by quantum chemical calculations, and the calculation results were further validated with experimental data. The results show that the reaction free energy was substantially affected by the location of substituent groups on the phenazine molecule and the protonated water clusters. For the main proton addition process, the phenazines substituted with electron-donating groups and those with electron-withdrawing groups interacted with different protonated water clusters, attributed to the proximity effect of water molecules on proton transfer. Thus, high energy conversion efficiency could be achieved by controlling electron flow route with appropriate substituted phenazines to reduce the biological energy acquisition. This study provides useful information for designing efficient redox mediators to promote electron transfer between microbes and terminal acceptors, which are essential to bioenergy recovery from wastes and environmental bioremediation. PMID:23244024

  16. Redox Regulation of Plant Development

    PubMed Central

    Considine, Michael J.

    2014-01-01

    Abstract Significance: We provide a conceptual framework for the interactions between the cellular redox signaling hub and the phytohormone signaling network that controls plant growth and development to maximize plant productivity under stress-free situations, while limiting growth and altering development on exposure to stress. Recent Advances: Enhanced cellular oxidation plays a key role in the regulation of plant growth and stress responses. Oxidative signals or cycles of oxidation and reduction are crucial for the alleviation of dormancy and quiescence, activating the cell cycle and triggering genetic and epigenetic control that underpin growth and differentiation responses to changing environmental conditions. Critical Issues: The redox signaling hub interfaces directly with the phytohormone network in the synergistic control of growth and its modulation in response to environmental stress, but a few components have been identified. Accumulating evidence points to a complex interplay of phytohormone and redox controls that operate at multiple levels. For simplicity, we focus here on redox-dependent processes that control root growth and development and bud burst. Future Directions: The multiple roles of reactive oxygen species in the control of plant growth and development have been identified, but increasing emphasis should now be placed on the functions of redox-regulated proteins, along with the central roles of reductants such as NAD(P)H, thioredoxins, glutathione, glutaredoxins, peroxiredoxins, ascorbate, and reduced ferredoxin in the regulation of the genetic and epigenetic factors that modulate the growth and vigor of crop plants, particularly within an agricultural context. Antioxid. Redox Signal. 21, 1305–1326. PMID:24180689

  17. Redox-Dependent Conformational Changes in Cytochrome c Oxidase Suggest a Gating Mechanism for Proton Uptake

    SciTech Connect

    Qin, Ling; Liu, Jian; Mills, Denise A.; Proshlyakov, Denis A.; Hiser, Carrie; Ferguson-Miller, Shelagh

    2009-08-05

    A role for conformational change in the coupling mechanism of cytochrome c oxidase is the subject of controversy. Relatively small conformational changes have been reported in comparisons of reduced and oxidized crystal structures of bovine oxidase but none in bacterial oxidases. Comparing the X-ray crystal structures of the reduced (at 2.15 {angstrom} resolution) and oxidized forms of cytochrome c oxidase from Rhodobacter sphaeroides, we observe a displacement of heme a3 involving both the porphyrin ring and the hydroxyl farnesyl tail, accompanied by protein movements in nearby regions, including the mid part of helix VIII of subunit I which harbors key residues of the K proton uptake path, K362 and T359. The conformational changes in the reduced form are reversible upon reoxidation. They result in an opening of the top of the K pathway and more ordered waters being resolved in that region, suggesting an access path for protons into the active site. In all high-resolution structures of oxidized R. sphaeroides cytochrome c oxidase, a water molecule is observed in the hydrophobic region above the top of the D path, strategically positioned to facilitate the connection of residue E286 of subunit I to the active site or to the proton pumping exit path. In the reduced and reduced plus cyanide structures, this water molecule disappears, implying disruption of proton conduction from the D path under conditions when the K path is open, thus providing a mechanism for alternating access to the active site.

  18. The effect of the periodic boundary conditions of a ZnO-coated nanospring on its surface redox-induced electrical response

    NASA Astrophysics Data System (ADS)

    Bakharev, Pavel V.; McIlroy, David N.

    2014-11-01

    A redox chemical sensor (chemiresistor) was constructed with a single ZnO coated silica nanospring. The chemiresistor response to toluene vapor as a function of the sensor temperature (TNS) and vapor temperature (TV) was measured and analyzed. The maximum sensitivity of the single ZnO coated nanospring device occurred at the sensor temperature (TNS) of 310 °C and at the vapor temperature (TV) of 250 °C. The characteristics of the electrical response of a single ZnO coated nanospring device were compared to those of a ZnO thin film. The single ZnO nanospring sensor was less responsive to small changes in toluene concentration relative to the ZnO thin film, but has a lower ultimate detection level. A computational model to simulate an electrical response of the single nanospring sensor and the thin film indicated that the differences between their response characteristics is due to the geometry of the nanospring and corresponding periodic boundary conditions imposed by the nanospring geometry, which is absent in a thin film.

  19. Redox Regulation of Mitochondrial Function

    PubMed Central

    Handy, Diane E.

    2012-01-01

    Abstract Redox-dependent processes influence most cellular functions, such as differentiation, proliferation, and apoptosis. Mitochondria are at the center of these processes, as mitochondria both generate reactive oxygen species (ROS) that drive redox-sensitive events and respond to ROS-mediated changes in the cellular redox state. In this review, we examine the regulation of cellular ROS, their modes of production and removal, and the redox-sensitive targets that are modified by their flux. In particular, we focus on the actions of redox-sensitive targets that alter mitochondrial function and the role of these redox modifications on metabolism, mitochondrial biogenesis, receptor-mediated signaling, and apoptotic pathways. We also consider the role of mitochondria in modulating these pathways, and discuss how redox-dependent events may contribute to pathobiology by altering mitochondrial function. Antioxid. Redox Signal. 16, 1323–1367. PMID:22146081

  20. Temperature micro-mapping and redox conditions of a chlorite zoning pattern in green-schist facies fault zone

    NASA Astrophysics Data System (ADS)

    Trincal, Vincent; Lanari, Pierre; Lacroix, Brice; Buatier, Martine D.; Charpentier, Delphine; Labaume, Pierre; Muñoz, Manuel

    2014-05-01

    Faults are major discontinuities driving fluid flows and playing a major role in precipitation of ore deposits. Mineral paragenesis and crystal chemistry depend on Temperature (T) condition, fluid composition but also on the redox environment of precipitation. The studied samples come from the Pic de Port Vieux thrust sheet, a minor thrust sheet associated to Gavarnie thrust fault zone (Central Pyrenees). The Pic de Port Vieux Thrust sheet comprises a 1-20 meter thick layer of Triassic red beds and mylonitized Cretaceous limestone. The thrust sheet is affected by faults and cleavage; the other important deformation product is a set of veins filled by quartz and chlorite. Microstructural and mineralogical investigations were performed based on the previous work of Grant (1992). The crystallization of chlorite is syn-tectonic and strongly controlled by the fluid circulation during the Gavarnie thrust sheet emplacement. Chlorite precipitated in extension veins, crack-seal shear veins or in open cavities. The chlorite filling the open cavities occurs as pseudo-uniaxial plates arranged in rosette-shaped aggregates. These aggregates appear to have developed as a result of radial growth of the chlorite platelets. According to point and microprobe X-ray images, these chlorites display oscillatory chemical zoning patterns with alternating iron rich and magnesium rich bands. The chlorite composition ranges from Fe rich pole (Si2.62Al1.38O10(Al1.47Fe1.87Mg2.61)6(OH)8) to Mg rich pole (Si2.68Al1.31O10(Al1.45Fe1.41Mg3.06)6(OH)8). In metamorphic rocks, zoning pattern or rimmed minerals results for varying P or T conditions and can be used to unravel the P-T history of the sample. In the present study, temperature maps are derived from standardized microprobe X-ray images using the program XMapTools (Lanari et al 2014). The (Fe3+/Fetot) value in chlorite was directly measured using μXANES spot analyses collected at the Fe-K edge. The results indicate a homogeneous temperature of

  1. Redox Changes Induced by General Anesthesia in Critically Ill Patients with Multiple Traumas

    PubMed Central

    Papurica, Marius; Rogobete, Alexandru Florin; Sandesc, Dorel; Dumache, Raluca; Nartita, Radu; Sarandan, Mirela; Cradigati, Alina Carmen; Luca, Loredana; Vernic, Corina; Bedreag, Ovidiu Horea

    2015-01-01

    The critically ill polytrauma patient is a constant challenge for the trauma team due to the complexity of the complications presented. Intense inflammatory response and infections, as well as multiple organ dysfunctions, significantly increase the rate of morbidity and mortality in these patients. Moreover, due to the physiological and biochemical imbalances present in this type of patients, the bioproduction of free radicals is significantly accelerated, thus installing the oxidative stress. In the therapeutic management of such patients, multiple surgical interventions are required and therefore they are being subjected to repeated general anesthesia. In this paper, we want to present the pathophysiological implications of oxidative stress in critically ill patients with multiple traumas and the implications of general anesthesia on the redox mechanisms of the cell. We also want to summarize the antioxidant treatments able to reduce the intensity of oxidative stress by modulating the biochemical activity of some cellular mechanisms. PMID:26693352

  2. Combining sedimentological, trace metal (Mn, Mo) and molecular evidence for reconstructing past water-column redox conditions: The example of meromictic Lake Cadagno (Swiss Alps)

    NASA Astrophysics Data System (ADS)

    Wirth, Stefanie B.; Gilli, Adrian; Niemann, Helge; Dahl, Tais W.; Ravasi, Damiana; Sax, Nadja; Hamann, Yvonne; Peduzzi, Raffaele; Peduzzi, Sandro; Tonolla, Mauro; Lehmann, Moritz F.; Anselmetti, Flavio S.

    2013-11-01

    Here, we present sedimentological, trace metal, and molecular evidence for tracking bottom water redox-state conditions during the past 12,500 years in nowadays sulfidic and meromictic Lake Cadagno (Switzerland). A 10.5 m long sediment core from the lake covering the Holocene period was investigated for concentration variations of the trace metals Mn and Mo (XRF core scanning and ICP-MS measurements), and for the presence of anoxygenic phototrophic sulfur bacteria (carotenoid pigment analysis and 16S rDNA real time PCR). Our trace metal analysis documents an oxic-intermediate-sulfidic redox-transition period beginning shortly after the lake formation ˜12.5 kyr ago. The oxic period is characterized by low sedimentary Mn and Mo concentrations, as well as by the absence of any remnants of anoxygenic phototrophic sulfur bacteria. Enhanced accumulation/preservation of Mn (up to 5.6 wt%) in the sediments indicates an intermediate, Mn-enriched oxygenation state with fluctuating redox conditions during a ˜2300-year long transition interval between ˜12.1 and 9.8 kyr BP. We propose that the high Mn concentrations are the result of enhanced Mn2+ leaching from the sediments during reducing conditions and subsequent rapid precipitation of Mn-(oxyhydr)oxide minerals during episodic and short-term water-column mixing events mainly due to flood-induced underflows. At 9800 ± 130 cal yr BP, a rapid transition to fully sulfidic conditions is indicated by the marked enrichment of Mo in the sediments (up to 490 ppm), accompanied by an abrupt drop in Mn concentrations and the increase of molecular biomarkers that indicate the presence of anoxygenic photosynthetic bacteria in the water column. Persistently high Mo concentrations >80 ppm provide evidence that sulfidic conditions prevailed thereafter until modern times, without any lasting hypolimnetic ventilation and reoxygenation. Hence, Lake Cadagno with its persistently stable chemocline offers a framework to study in great

  3. Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation

    DOE PAGESBeta

    Sander, Kyle B.; Wilson, Charlotte M.; M. Rodriquez, Jr.; Klingeman, Dawn Marie; Davison, Brian H.; Brown, Steven D.; Rydzak, T.

    2015-12-12

    Clostridium thermocellum is a promising consolidated bioprocessing candidate organism capable of directly converting lignocellulosic biomass to ethanol. Current ethanol yields, productivities, and growth inhibitions are industrial deployment impediments for commodity fuel production by this bacterium. Redox imbalance under certain conditions and in engineered strains may contribute to incomplete substrate utilization and may direct fermentation products to undesirable overflow metabolites. As a result, towards a better understanding of redox metabolism in C. thermocellum, we established continuous growth conditions and analyzed global gene expression during addition of two stress chemicals (methyl viologen and hydrogen peroxide) which changed the fermentation redox potential.

  4. Dependence of particle concentration effect on pH and redox for arsenic removal by FeS-coated sand under anoxic conditions.

    PubMed

    Han, Young-Soo; Demond, Avery H; Gallegos, Tanya J; Hayes, Kim F

    2015-09-01

    FeS has been recognized as a good scavenger for arsenic under anoxic conditions. To create a suitable adsorbent for flow-through reactors such as permeable reactive barriers, it has been suggested that this material may be coated onto sand. However, previous work on FeS-coated sand has focused on batch reactors, while flow-through reactors usually have higher solid-solution ratios. To ascertain whether differences in the solid-solution ratio (SSR) are important in this system, batch sorption experiments were conducted as a function of pH using As(III) and FeS-coated sands at various solid-solution ratios. The results showed little variation in the distribution coefficient with SSR at pH 7 and 9. However, at pH 5, the results showed lower values of the distribution coefficient at lower SSRs, the reverse of typically reported SSR effects. Measured pe values showed a dependence on SSR, which, when coupled with chemical modeling of the Fe-As-S-H2O system, suggested a change in the removal mechanism with SSR, from adsorption to a reduced Fe(II) oxyhydroxide phase (represented by Fe2(OH)5) to precipitation as As2S3 or AsS. On the other hand, at pH 7 and 9, arsenite adsorption is the most probable removal mechanism regardless of the pe. Thus, this study identified variations in pH and redox conditions, and the removal mechanisms that these parameters govern, as the reason for the apparent SSR effect. PMID:25553897

  5. The effect of redox conditions and adaptation time on organic micropollutant removal during river bank filtration: A laboratory-scale column study.

    PubMed

    Bertelkamp, C; Verliefde, A R D; Schoutteten, K; Vanhaecke, L; Vanden Bussche, J; Singhal, N; van der Hoek, J P

    2016-02-15

    This study investigated the redox dependent removal and adaptive behaviour of a mixture of 15 organic micropollutants (OMPs) in laboratory-scale soil columns fed with river water. Three separate pilot systems were used consisting of: (1) two columns, (2) ten columns and (3) twenty two columns to create oxic, suboxic (partial nitrate removal) and anoxic (complete nitrate removal). The pilot set-up has some unique features--it can simulate fairly long residence times (e.g., 45 days using the 22 column system) and reduced conditions developed naturally within the system. Dimethoate, diuron, and metoprolol showed redox dependent removal behaviour with higher biodegradation rates in the oxic zone compared to the suboxic/anoxic zone. The redox dependent behaviour of these three OMPs could not be explained based on their physico-chemical properties (hydrophobicity, charge and molecular weight) or functional groups present in the molecular structure. OMPs that showed persistent behaviour in the oxic zone (atrazine, carbamazepine, hydrochlorothiazide and simazine) were also not removed under more reduced conditions. Adaptive behaviour was observed for five OMPs: dimethoate, chloridazon, lincomycin, sulfamethoxazole and phenazone. However, the adaptive behaviour could not be explained by the physico-chemical properties (hydrophobicity, charge and molecular weight) investigated in this study and only rough trends were observed with specific functional groups (e.g. ethers, sulphur, primary and secondary amines). Finally, the adaptive behaviour of OMPs was found to be an important factor that should be incorporated in predictive models for OMP removal during river bank filtration. PMID:26657377

  6. Redox condition of the late Neoproterozoic pelagic deep ocean: 57Fe Mössbauer analyses of pelagic mudstones in the Ediacaran accretionary complex, Wales, UK

    NASA Astrophysics Data System (ADS)

    Sato, Tomohiko; Sawaki, Yusuke; Asanuma, Hisashi; Fujisaki, Wataru; Okada, Yoshihiro; Maruyama, Shigenori; Isozaki, Yukio; Shozugawa, Katsumi; Matsuo, Motoyuki; Windley, Brian F.

    2015-11-01

    We report geological and geochemical analysis of Neoproterozoic pelagic deep-sea mudstones in an accretionary complex in Lleyn, Wales, UK. Ocean plate stratigraphy at Porth Felen, NW Lleyn, consists of mid-ocean ridge basalt (> 4 m), bedded dolostone (2 m), black mudstone (5 m), hemipelagic siliceous mudstone (1 m,) and turbiditic sandstone (15 m), in ascending order. The absence of terrigenous clastics confirms that the black and siliceous mudstone was deposited in a pelagic deep-sea. Based on the youngest U-Pb age (564 Ma) of detrital zircons separated from overlying sandstone, the deep-sea black mudstone was deposited in the late Ediacaran. The 5 m-thick black mudstone contains the following distinctive lithologies: (i) black mudstone with thin pyritic layers (0.8 m), (ii) alternation of black mudstone and gray/dark gray siliceous mudstone (2.4 m), (iii) thinly-laminated dark gray shale (1 m), and (iv) black mudstone with thin pyritic layers (1 m). 57Fe Mössbauer spectroscopy confirms that these black mudstones contain pyrite without hematite. In contrast, red bedded claystones (no younger than 542 Ma) in the neighboring Braich section contain hematite as their main iron mineral. These deep-sea mudstones in the Lleyn Peninsula record a change of redox condition on the pelagic deep-sea floor during the Ediacaran. The black mudstone at Porth Felen shows that deep-sea anoxia existed in the late Ediacaran. The eventual change from a reducing to an oxidizing deep-sea environment likely occurred in the late Ediacaran (ca. 564-542 Ma).

  7. Calcium Dynamics of Ex Vivo Long-Term Cultured CD8+ T Cells Are Regulated by Changes in Redox Metabolism

    PubMed Central

    Gran, Margaret A.; Potnis, Anish; Hill, Abby; Lu, Hang

    2016-01-01

    T cells reach a state of replicative senescence characterized by a decreased ability to proliferate and respond to foreign antigens. Calcium release associated with TCR engagement is widely used as a surrogate measure of T cell response. Using an ex vivo culture model that partially replicates features of organismal aging, we observe that while the amplitude of Ca2+ signaling does not change with time in culture, older T cells exhibit faster Ca2+ rise and a faster decay. Gene expression analysis of Ca2+ channels and pumps expressed in T cells by RT-qPCR identified overexpression of the plasma membrane CRAC channel subunit ORAI1 and PMCA in older T cells. To test whether overexpression of the plasma membrane Ca2+ channel is sufficient to explain the kinetic information, we adapted a previously published computational model by Maurya and Subramaniam to include additional details on the store-operated calcium entry (SOCE) process to recapitulate Ca2+ dynamics after T cell receptor stimulation. Simulations demonstrated that upregulation of ORAI1 and PMCA channels is not sufficient to explain the observed alterations in Ca2+ signaling. Instead, modeling analysis identified kinetic parameters associated with the IP3R and STIM1 channels as potential causes for alterations in Ca2+ dynamics associated with the long term ex vivo culturing protocol. Due to these proteins having known cysteine residues susceptible to oxidation, we subsequently investigated and observed transcriptional remodeling of metabolic enzymes, a shift to more oxidized redox couples, and post-translational thiol oxidation of STIM1. The model-directed findings from this study highlight changes in the cellular redox environment that may ultimately lead to altered T cell calcium dynamics during immunosenescence or organismal aging. PMID:27526200

  8. Endoplasmic reticulum stress triggers ROS signalling, changes the redox state, and regulates the antioxidant defence of Arabidopsis thaliana

    PubMed Central

    Turkan, Ismail

    2014-01-01

    Inefficient chaperone activity in endoplasmic reticulum (ER) causes accumulation of unfolded proteins and is called ER stress, which triggers the unfolded protein response. For proper oxidative protein folding, reactive oxygen species (ROS) such as H2O2 are produced in the ER. Although the role of ROS during abiotic stresses such as salinity is well documented, the role of ER-related ROS production and its signalling is not yet known. Moreover, how H2O2 production, redox regulation, and antioxidant defence are affected in salt-treated plants when ER protein-folding machinery is impaired needs to be elucidated. For this aim, changes in NADPH-oxidase-dependent ROS signalling and H2O2 content at sequential time intervals and after 48h of ER stress, induced by tunicamycin (Tm), salinity, and their combination were determined in Arabidopsis thaliana. The main root growth was inhibited by ER stress, while low levels of Tm caused an increase in lateral root density. Salt stress and Tm induced the expression of ER-stress-related genes (bZIP17, bZIP28, bZIP60, TIN1, BiP1, BiP3) and ERO1. Tm induced expression of RBOHD and RBOHF, which led to an early increase in H2O2 and triggered ROS signalling. This study is the first report that ER stress induces the antioxidant system and the Asada–Halliwell pathway of A. thaliana in a similar way to salinity. ER stress caused oxidative damage, as evident by increased H2O2 accumulation, lipid peroxidation, and protein oxidation. As a result, this study shows that ER stress triggers ROS signalling, changes the redox state, and regulates the antioxidant defence of A. thaliana. PMID:24558072

  9. Increasing tetrahydrobiopterin in cardiomyocytes adversely affects cardiac redox state and mitochondrial function independently of changes in NO production.

    PubMed

    Sethumadhavan, Savitha; Whitsett, Jennifer; Bennett, Brian; Ionova, Irina A; Pieper, Galen M; Vasquez-Vivar, Jeannette

    2016-04-01

    Tetrahydrobiopterin (BH4) represents a potential strategy for the treatment of cardiac remodeling, fibrosis and/or diastolic dysfunction. The effects of oral treatment with BH4 (Sapropterin™ or Kuvan™) are however dose-limiting with high dose negating functional improvements. Cardiomyocyte-specific overexpression of GTP cyclohydrolase I (mGCH) increases BH4 several-fold in the heart. Using this model, we aimed to establish the cardiomyocyte-specific responses to high levels of BH4. Quantification of BH4 and BH2 in mGCH transgenic hearts showed age-based variations in BH4:BH2 ratios. Hearts of mice (<6 months) have lower BH4:BH2 ratios than hearts of older mice while both GTPCH activity and tissue ascorbate levels were higher in hearts of young than older mice. No evident changes in nitric oxide (NO) production assessed by nitrite and endogenous iron-nitrosyl complexes were detected in any of the age groups. Increased BH4 production in cardiomyocytes resulted in a significant loss of mitochondrial function. Diminished oxygen consumption and reserve capacity was verified in mitochondria isolated from hearts of 12-month old compared to 3-month old mice, even though at 12 months an improved BH4:BH2 ratio is established. Accumulation of 4-hydroxynonenal (4-HNE) and decreased glutathione levels were found in the mGCH hearts and isolated mitochondria. Taken together, our results indicate that the ratio of BH4:BH2 does not predict changes in neither NO levels nor cellular redox state in the heart. The BH4 oxidation essentially limits the capacity of cardiomyocytes to reduce oxidant stress. Cardiomyocyte with chronically high levels of BH4 show a significant decline in redox state and mitochondrial function. PMID:26826575

  10. 48 CFR 52.243-5 - Changes and Changed Conditions.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... notify the Contracting Officer, in writing, of subsurface or latent physical conditions differing materially from those indicated in this contract or unknown unusual physical conditions at the site...

  11. 48 CFR 52.243-5 - Changes and Changed Conditions.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... notify the Contracting Officer, in writing, of subsurface or latent physical conditions differing materially from those indicated in this contract or unknown unusual physical conditions at the site...

  12. 48 CFR 52.243-5 - Changes and Changed Conditions.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... notify the Contracting Officer, in writing, of subsurface or latent physical conditions differing materially from those indicated in this contract or unknown unusual physical conditions at the site...

  13. 48 CFR 52.243-5 - Changes and Changed Conditions.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... notify the Contracting Officer, in writing, of subsurface or latent physical conditions differing materially from those indicated in this contract or unknown unusual physical conditions at the site...

  14. 48 CFR 52.243-5 - Changes and Changed Conditions.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... notify the Contracting Officer, in writing, of subsurface or latent physical conditions differing materially from those indicated in this contract or unknown unusual physical conditions at the site...

  15. Dissolution of UO{sub 2} (s) in MgCl{sub 2}-brines under different redox conditions

    SciTech Connect

    Casas, I.; Gimenez, J.; De Pablo, J.; Torrero, M.E.

    1993-12-31

    The dissolution of unirradiated UO{sub 2} (s), with a particle size of 1 mm, has been studied in MgCl{sub 2} brines at 298 K under both reducing and oxidizing conditions. Results obtained under reducing conditions (h{sub 2} atmosphere in the presence of a palladium catalyst) show an initial increase of the total uranium concentration in solution and a subsequent decrease until equilibrium (or steady state) values are reached. Results obtained under oxidizing conditions (nominal oxygen partial pressures of 0.05, 0.21 and 1 atm) show two different trends. A relatively fast initial dissolution rate and, after approximately two or three weeks, a slower dissolution rate. X-ray Photoelectron Spectroscopy (XPS) has shown that the UO{sub 2} surface composition changes during the experiment.

  16. Studying Iron Mineralogy to Understand Redox Conditions in the Mesoproterozoic Belt Basin, USA Using Complementary Microscopic, Spectroscopic, and Magnetic Techniques

    NASA Astrophysics Data System (ADS)

    Slotznick, S. P.; Webb, S.; Kirschvink, J. L.; Fischer, W. W.

    2015-12-01

    Observations of iron chemistry and mineralogy over time provide a valuable tool for studying paleoenvironments, but questions still remain as to the redox character of Proterozoic basins after the rise of oxygen. To evaluate the mechanisms of iron mineralization in Proterozoic samples, we developed an approach that pairs the microscale textural techniques of light microscopy, magnetic scanning microscopy, and (synchrotron-based) microprobe x-ray spectroscopy with sensitive bulk rock magnetic experiments. Samples were collected from stratigraphic sections across the ~1.4 Ga lower Belt Group, Belt Supergroup, MT and ID, USA with a focus on excellently preserved sedimentary rocks, but also including those altered by a variety of diagenetic, metamorphic, and metasomatic events. Results show that even in the best-preserved parts of the Belt Basin, late diagenetic and/or metasomatic fluids affected (in some cases very mildly) the primary iron phases as evidenced by prevalent post-depositional alterations such as rare base metal sulfides. In more heavily altered rocks, the appearance of pyrrhotite and other minerals signaled transformations in iron mineralogy through metamorphism and metasomatism. Despite these secondary phases crystallizing in an open fluid-rich system, primary records of redox chemistry were preserved in the recrystallized early diagenetic framboidal pyrite and (sub)micron-sized detrital magnetite grains. Detrital magnetite is not the most abundant iron-bearing phase in any of the samples (typically <0.01 wt%), but is widely observed in both proximal and deeper basin facies, illustrating an important detrital flux of iron to the basin and a highly reactive iron source for early diagenetic pyrite. Based on our analyses, we interpret the shallow waters of the Belt Basin to be oxic with sulfidic pore fluids and deeper waters in parts of the basin as likely euxinic, consistent with the results of some bulk geochemical proxies. This redox reconstruction also

  17. The NHS reforms. Conditions for successful change.

    PubMed

    Forster, D P; Hadley, R

    1989-10-01

    The NHS Review has proposed the most radical organisational change in health care since the inception of the service itself in 1948. Yet, the problems entailed in gaining acceptance for reforms of such magnitude are scarcely touched on in the white paper. The scale and strength of opposition which the proposals have subsequently met within the NHS have shown clearly that the issue of the management of change is likely to be central in the acceptance or otherwise of the proposals and subsequently their success or failure. Donald Forster and Roger Hadley outline the framework within which the issues posed by change can be analysed and assessed. In keeping with the government's preference for a management perspective, they emphasise insights from the literature on the management of change rather than the detail of the white paper. PMID:10296172

  18. Microbial Fingerprints of Community Structure Correlate with Changes in Ecosystem Function Induced by Perturbing the Redox Environment

    NASA Astrophysics Data System (ADS)

    Mills, A. L.; Ford, R. M.; Vallino, J. J.; Herman, J. S.; Hornberger, G. M.

    2001-12-01

    Restoration of high-quality groundwater has been an elusive engineering goal. Consequently, natural microbially-mediated reactions are increasingly relied upon to degrade organic contaminants, including hydrocarbons and many synthetic compounds. Of concern is how the introduction of an organic chemical contaminant affects the indigenous microbial communities, the geochemistry of the aquifer, and the function of the ecosystem. The presence of functional redundancy in microbial communities suggests that recovery of the community after a disturbance such as a contamination event could easily result in a community that is similar in function to that which existed prior to the contamination, but which is compositionally quite different. To investigate the relationship between community structure and function we observed the response of a diverse microbial community obtained from raw sewage to a dynamic redox environment using an aerobic/anaerobic/aerobic cycle. To evaluate changes in community function CO2, pH, ammonium and nitrate levels were monitored. A phylogenetically-based DNA technique (tRFLP) was used to assess changes in microbial community structure. Principal component analysis of the tRFLP data revealed significant changes in the composition of the microbial community that correlated well with changes in community function. Results from our experiments will be discussed in the context of a metabolic model based the biogeochemistry of the system. The governing philosophy of this thermodynamically constrained metabolic model is that living systems synthesize and allocate cellular machinery in such a way as to "optimally" utilize available resources in the environment. The robustness of this optimization-based approach provides a powerful tool for studying relationships between microbial diversity and ecosystem function.

  19. Biochemical and structural characterization of Pseudomonas aeruginosa Bfd and FPR: ferredoxin NADP+ reductase and not ferredoxin is the redox partner of heme oxygenase under iron-starvation conditions.

    PubMed

    Wang, An; Zeng, Yuhong; Han, Huijong; Weeratunga, Saroja; Morgan, Bailey N; Moënne-Loccoz, Pierre; Schönbrunn, Ernst; Rivera, Mario

    2007-10-30

    Among the 118 genes upregulated by Pseudomonas aeruginosa in response to iron starvation [Ochsner, U. A., Wilderman, P. J., Vasil, A. I., and Vasil, M. L. (2002) Mol. Microbiol. 45, 1277-1287], we focused on the products of the two genes encoding electron transfer proteins, as a means of identifying the redox partners of the heme oxygenase (pa-HO) expressed under low-iron stress conditions. Biochemical and spectroscopic investigations demonstrated that the bfd gene encodes a 73-amino acid protein (pa-Bfd) that incorporates a [2Fe-2S]2+/+ center, whereas the fpr gene encodes a 258-residue NADPH-dependent ferredoxin reductase (pa-FPR) that utilizes FAD as a cofactor. In vitro reconstitution of pa-HO catalytic activity with the newly characterized proteins led to the surprising observation that pa-FPR efficiently supports the catalytic cycle of pa-HO, without the need of a ferredoxin. In comparison, electron transfer from pa-Bfd to pa-HO is sluggish, which strongly argues against the possibility that the seven electrons needed by pa-HO to degrade biliverdin are transferred from NADPH to pa-HO in a ferredoxin (Bfd)-dependent manner. Given that pa-HO functions to release iron from exogenous heme acquired under iron-starvation conditions, the use of a flavoenzyme rather than an iron-sulfur center-containing protein to support heme degradation is an efficient use of resources in the cell. The crystal structure of pa-FPR (1.6 A resolution) showed that its fold is comparable that of the superfamily of ferredoxin reductases and most similar to the structure of Azotobacter vinelandii FPR and Escherichia coli flavodoxin reductase. The latter two enzymes interact with distinct redox partners, a ferredoxin and a flavodoxin, respectively. Hence, findings reported herein extend the range of redox partners recognized by the fold of pa-FPR to include a heme oxygenase (pa-HO). PMID:17915950

  20. Electrochemical response of a biofilm community to changes in electron-acceptor redox potential elucidated using microbial fuel cells

    NASA Astrophysics Data System (ADS)

    Arbour, T.; Wrighton, K. C.; Mullin, S. W.; Luef, B.; Gilbert, B.; Banfield, J. F.

    2012-12-01

    Currently, we have limited insight into how mineral properties affect dissimilatory metal-reducing bacteria (DMRB) or the microbial communities that contain them. Advances in our understanding of DMRB metabolism have been achieved using microbial fuel cells (MFCs), which exploit the ability of these organisms to transfer electrons extracellularly. By replacing the mineral electron acceptor with a conductive electrode under potentiostat control, the activity of microorganisms capable of interfacial electron transfer can be quantified by the current flowing through the electrode and related to the thermodynamics of respiration. We seek to understand how communities and their individual members respond to changes in mineralogy, and expect mineral redox potential to be a primary control. The ability to precisely control the redox potential of the electron-accepting anodic electrode is our primary motivation for using MFCs. We inoculated duplicate MFCs containing 10 mM acetate in phosphate buffered media with a slurry of subsurface sediment and groundwater obtained from the Integrated Field-Scale Research Challenge Site at Rifle, CO. Electroactive biofilms were established on graphite anodes poised at a favorable potential (0.0 V vs. SHE) before poising at -0.2 V—a potential representative of natural iron reduction. The current was stable across both anodes over more than 100 days of operation, and the percentage of the electrons in acetate recovered as current ("Coulombic efficiency") was typically 70 to >90%. Current density reached 0.4 A/m2 at -0.2 V, to a max of over 1.0 A/m2 at or above ~0.0 V (based on geometric electrode surface area). Media exchanges and biofilm cyclic voltammetry (CV) experiments indicate that electrode-attached microbial communities were responsible for primary electron transfer. Cryo-electron and confocal fluorescence microscopies of the biofilm reveal numerous morphologies of viable microorganisms that are currently being characterized

  1. Studying the relationship between redox and cell growth using quantitative phase imaging (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Sridharan, Shamira; Leslie, Matthew T.; Bapst, Natalya; Smith, John; Gaskins, H. Rex; Popescu, Gabriel

    2016-03-01

    Quantitative phase imaging has been used in the past to study the dry mass of cells and study cell growth under various treatment conditions. However, the relationship between cellular redox and growth rates has not yet been studied in this context. This study employed the recombinant Glrx-roGFP2 redox biosensor targeted to the mitochondrial matrix or cytosolic compartments of A549 lung epithelial carcinoma cells. The Glrx-roGFP2s biosensor consists of a modified GFP protein containing internal cysteine residues sensitive to the local redox environment. The formation/dissolution of sulfide bridges contorts the internal chromophore, dictating corresponding changes in florescence emission that provide direct measures of the local redox potential. Combining 2-channel florescent imaging of the redox sensor with quantitative phase imaging allowed observation of redox homeostasis alongside measurements of cellular mass during full cycles of cellular division. The results indicate that mitochondrial redox showed a stronger inverse correlation with cell growth than cytoplasmic redox states; although redox changes are restricted to a 5% range. We are now studying the relationship between mitochondrial redox and cell growth in an isogenic series of breast cell lines built upon the MCF-10A genetic background that vary both in malignancy and metastatic potential.

  2. Hydrogeological Conditions Changes of Tomsk, Russia

    NASA Astrophysics Data System (ADS)

    Pokrovsky, V. D.; Dutova, E. M.; Kuzevanov, K. I.; Pokrovsky, D. S.; Nalivaiko, N. G.

    2015-11-01

    The hydro-geological conditions of Tomsk are determined by both natural factors and the impact of the urban infrastructure. Important impact on subsurface water flows involves the complex hydraulic relationship of several geological layers and the ancient and modern relief. Increasing groundwater abstraction has generally led to lowered piezometric heads in the deeper aquifer horizons, while in the uppermost horizons, rises in the water table and formation of new perched water tables are experienced due to leaking pipes and impedance of groundwater flow by deep foundations. In this paper special attention is paid to the Quaternary aquifer complex. Barrage effects of pile foundations and the intensive development of perched water distributed on flat surfaces of the watersheds and high terraces, complicated conditions for the construction and operation of facilities, leading in some cases to emergency situations.

  3. Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography.

    PubMed

    Fukuda, Yohta; Tse, Ka Man; Suzuki, Mamoru; Diederichs, Kay; Hirata, Kunio; Nakane, Takanori; Sugahara, Michihiro; Nango, Eriko; Tono, Kensuke; Joti, Yasumasa; Kameshima, Takashi; Song, Changyong; Hatsui, Takaki; Yabashi, Makina; Nureki, Osamu; Matsumura, Hiroyoshi; Inoue, Tsuyoshi; Iwata, So; Mizohata, Eiichi

    2016-05-01

    Serial femtosecond crystallography (SFX) has enabled the damage-free structural determination of metalloenzymes and filled the gaps of our knowledge between crystallographic and spectroscopic data. Crystallographers, however, scarcely know whether the rising technique provides truly new structural insights into mechanisms of metalloenzymes partly because of limited resolutions. Copper nitrite reductase (CuNiR), which converts nitrite to nitric oxide in denitrification, has been extensively studied by synchrotron radiation crystallography (SRX). Although catalytic Cu (Type 2 copper (T2Cu)) of CuNiR had been suspected to tolerate X-ray photoreduction, we here showed that T2Cu in the form free of nitrite is reduced and changes its coordination structure in SRX. Moreover, we determined the completely oxidized CuNiR structure at 1.43 Å resolution with SFX. Comparison between the high-resolution SFX and SRX data revealed the subtle structural change of a catalytic His residue by X-ray photoreduction. This finding, which SRX has failed to uncover, provides new insight into the reaction mechanism of CuNiR. PMID:26769972

  4. Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography

    PubMed Central

    Fukuda, Yohta; Suzuki, Mamoru; Matsumura, Hiroyoshi; Inoue, Tsuyoshi; Iwata, So; Mizohata, Eiichi

    2016-01-01

    Serial femtosecond crystallography (SFX) has enabled the damage-free structural determination of metalloenzymes and filled the gaps of our knowledge between crystallographic and spectroscopic data. Crystallographers, however, scarcely know whether the rising technique provides truly new structural insights into mechanisms of metalloenzymes partly because of limited resolutions. Copper nitrite reductase (CuNiR), which converts nitrite to nitric oxide in denitrification, has been extensively studied by synchrotron radiation crystallography (SRX). Although catalytic Cu (Type 2 copper (T2Cu)) of CuNiR had been suspected to tolerate X-ray photoreduction, we here showed that T2Cu in the form free of nitrite is reduced and changes its coordination structure in SRX. Moreover, we determined the completely oxidized CuNiR structure at 1.43 Å resolution with SFX. Comparison between the high-resolution SFX and SRX data revealed the subtle structural change of a catalytic His residue by X-ray photoreduction. This finding, which SRX has failed to uncover, provides new insight into the reaction mechanism of CuNiR. PMID:26769972

  5. Terrain on Europa under Changing Lighting Conditions

    NASA Technical Reports Server (NTRS)

    1997-01-01

    These images obtained by the Solid State Imaging (CCD) system aboard NASA's Galileo spacecraft show the same region of Europa under different lighting conditions. The upper image was obtained on June 28th, 1996 during Galileo's first orbit around Jupiter under 'high-sun' conditions -- the equivalent of taking a picture from a high altitude at noon (with the sun directly overhead). Note that albedo (light/dark) features are emphasized. Compare this to the lower image containing a higher-resolution inset. This (inset) image was taken on November 6th, 1996 during the spacecraft's third orbit under 'low-sun' illumination -- the equivalent of taking a picture from a high altitude at sunrise or sunset. Note that in this image the albedo features are not readily apparent. Instead, the topography of the terrain is emphasized. Planetary geologists use information from images acquired under a variety of lighting conditions to identify different types of structures and interpret how they formed. Note that the bright linear features in the upper image are seen to be ridges in the lower image. The circular feature on the right side of both images, Cilix, is approximately 25 kilometers (15 miles) across.

    The area seen in the upper image is 312 kilometers (187 miles) by 570 kilometers (342 miles) across; the area covered by the inset is 36 kilometers (22 miles) by 315 kilometers (190 miles) across. Both of these images are centered near 2 South latitude, 185 West longitude. North is to the top of the frames.

    The Jet Propulsion Laboratory, Pasadena, CA manages the mission for NASA's Office of Space Science, Washington, DC.

    This image and other images and data received from Galileo are posted on the World Wide Web, on the Galileo mission home page at URL http://galileo.jpl.nasa.gov. Background information and educational context for the images can be found at URL http://www.jpl.nasa.gov/galileo/sepo

  6. Ultrastructural changes in osteocytes in microgravity conditions

    NASA Astrophysics Data System (ADS)

    Rodionova, N. V.; Oganov, V. S.; Zolotova, N. V.

    We examined the histology and morphometry of biosamples (biopsies) of the iliac crest of monkeys, flown 14 days aboard the "Bion-11", using electron microscopy. We found, that some young osteocytes take part in the activization of collagen protein biosynthesis in the adaptive remodeling process of the bone tissue to microgravity conditions. Osteocyte lacunae filled with collagen fibrils; this correlates with fibrotic osteoblast reorganization in such zones. The osteolytic activity in mature osteocytes is intensified. As a result of osteocyte destruction, the quantity of empty osteocytic lacunae in the bone tissue increases.

  7. Sensing of redox status by TRP channels.

    PubMed

    Ogawa, Nozomi; Kurokawa, Tatsuki; Mori, Yasuo

    2016-08-01

    Cellular redox status is maintained by the balance between series of antioxidant systems and production of reactive oxygen/nitrogenous species. Cells utilize this redox balance to mediate diverse physiological functions. Transient receptor potential (TRP) channels are non-selective cation channels that act as biosensors for environmental and noxious stimuli, such as capsaicin and allicin, as well as changes in temperature and conditions inside the cell. TRP channels also have an emerging role as essential players in detecting cellular redox status to regulate cellular signals mediating physiological phenomena. Reactive species activate TRP channels either directly through oxidative amino acid modifications or indirectly through second messengers. For instance, TRPA1, TRPV1 and TRPC5 channels are directly activated by oxidizing agents through cysteine modification; whereas, TRPM2 channel is indirectly activated by production of ADP-ribose. One intriguing property of several TRP channels is susceptibility to both oxidizing and reducing stimuli, suggesting TRP channels could potentially act as a bidirectional sensor for detecting deviations in redox status. In this review, we discuss the unique chemical physiologies of redox sensitive TRP channels and their physiological significance in Ca(2+) signaling. PMID:26969190

  8. The Association of Arsenic With Redox Conditions, Depth, and Ground-Water Age in the Glacial Aquifer System of the Northern United States

    USGS Publications Warehouse

    Thomas, Mary Ann

    2007-01-01

    More than 800 wells in the glacial aquifer system of the Northern United States were sampled for arsenic as part of U.S. Geological Survey National Water-Quality Assessment (NAWQA) studies during 1991-2003. Elevated arsenic concentrations (greater than or equal to 10 micrograms per liter) were detected in 9 percent of samples. Elevated arsenic concentrations were associated with strongly reducing conditions. Of the samples classified as iron reducing or sulfate reducing, arsenic concentrations were elevated in 19 percent. Of the methanogenic samples, arsenic concentrations were elevated in 45 percent. In contrast, concentrations of arsenic were elevated in only 1 percent of oxic samples. Arsenic concentrations were also related to ground-water age. Elevated arsenic concentrations were detected in 34 percent of old waters (recharged before 1953) as compared to 4 percent of young waters (recharged since 1953). For samples classified as both old and methanogenic, elevated arsenic concentrations were detected in 62 percent of samples, as compared to 1 percent for samples classified as young and oxic. Arsenic concentrations were also correlated with well depth and concentrations of several chemical constituents, including (1) constituents linked to redox processes and (2) anions or oxyanions that sorb to iron oxides. Observations from the glacial aquifer system are consistent with the idea that the predominant source of arsenic is iron oxides and the predominant mechanism for releasing arsenic to the ground water is reductive desorption or reductive dissolution. Arsenic is also released from iron oxides under oxic conditions, but on a more limited basis and at lower concentrations. Logistic regression was used to investigate the relative significance of redox, ground-water age, depth, and other water-quality constituents as indicators of elevated arsenic concentrations in the glacial aquifer system. The single variable that explained the greatest amount of variation in

  9. Superoxide Dismutase 1 Loss Disturbs Intracellular Redox Signaling, Resulting in Global Age-Related Pathological Changes

    PubMed Central

    2014-01-01

    Aging is characterized by increased oxidative stress, chronic inflammation, and organ dysfunction, which occur in a progressive and irreversible manner. Superoxide dismutase (SOD) serves as a major antioxidant and neutralizes superoxide radicals throughout the body. In vivo studies have demonstrated that copper/zinc superoxide dismutase-deficient (Sod1−/−) mice show various aging-like pathologies, accompanied by augmentation of oxidative damage in organs. We found that antioxidant treatment significantly attenuated the age-related tissue changes and oxidative damage-associated p53 upregulation in Sod1−/− mice. This review will focus on various age-related pathologies caused by the loss of Sod1 and will discuss the molecular mechanisms underlying the pathogenesis in Sod1−/− mice. PMID:25276767

  10. Experimental Evidence for Non-Redox Transformation Between Magnetite and Hermatite Under H2-Rich Hydrothermal Conditions

    SciTech Connect

    Otake, Tsubasa; Ohmoto, Hiroshi; Wesolowski, David J; Anovitz, Lawrence {Larry} M; Allard Jr, Lawrence Frederick

    2007-01-01

    Transformations of magnetite (Fe{sup II}Fe{sub 2}{sup III}O{sub 4}) to hematite (Fe{sub 2}{sup III}O{sub 3}) (and vice versa) have been thought by many scientists and engineers to require molecular O{sub 2} and/or H{sub 2}. Thus, the presence of magnetite and/or hematite in rocks has been linked to a specific oxidation environment. However, the availability of reductants or oxidants in many geologic and industrial environments appears to have been too low to account for the transformations of iron oxides through redox reactions. Here, we report the results of hydrothermal experiments in mildly acidic and H{sub 2}-rich aqueous solutions at 150 C, which demonstrate that transformations of magnetite to hematite, and hematite to magnetite, occur rapidly without involving molecular O{sub 2} or H{sub 2}: Fe{sub 3}O{sub 4}(Mt) + 2H{sub (aq)}{sup +} {leftrightarrow} Fe{sub 2}O{sub 3}(Hm) + Fe{sub (aq)}{sup 2+} + H{sub 2}O The transformation products are chemically and structurally homogeneous, and typically occur as euhedral single crystals much larger than the precursor minerals. This suggests that, in addition to the expected release of aqueous ferrous species to solution, the transformations involve release of aqueous ferric species from the precursor oxides to the solution, which reprecipitate without being reduced by H{sub 2}. These redox-independent transformations may have been responsible for the formation of some iron oxides in natural systems, such as high-grade hematite ores that developed from Banded Iron Formations (BIFs), hematite-rich deposits formed on Mars, corrosion products in power plants and other industrial systems.

  11. Experimental evidence for non-redox transformations between magnetite and hematite under H-2-rich hydrothermal conditions.

    SciTech Connect

    Otake, Tsubasa; Wesolowski, David J; Anovitz, Lawrence {Larry} M

    2007-05-01

    Transformations of magnetite (Fe{sup II}Fe{sub 2}{sup III}O{sub 4}) to hematite (Fe{sub 2}{sup III}O{sub 3}) (and vice versa) have been thought by many scientists and engineers to require molecular O{sub 2} and/or H{sub 2}. Thus, the presence of magnetite and/or hematite in rocks has been linked to a specific oxidation environment. However, the availability of reductants or oxidants in many geologic and industrial environments appears to have been too low to account for the transformations of iron oxides through redox reactions. Here, we report the results of hydrothermal experiments in mildly acidic and H{sub 2}-rich aqueous solutions at 150 C, which demonstrate that transformations of magnetite to hematite, and hematite to magnetite, occur rapidly without involving molecular O{sub 2} or H{sub 2}: Fe{sub 3}O{sub 4}(Mt) + 2H{sub (aq)}{sup +} {leftrightarrow} Fe{sub 2}O{sub 3}(Hm) + Fe{sub (aq)}{sup 2+} + H{sub 2}O. The transformation products are chemically and structurally homogeneous, and typically occur as euhedral single crystals much larger than the precursor minerals. This suggests that, in addition to the expected release of aqueous ferrous species to solution, the transformations involve release of aqueous ferric species from the precursor oxides to the solution, which reprecipitate without being reduced by H{sub 2}. These redox-independent transformations may have been responsible for the formation of some iron oxides in natural systems, such as high-grade hematite ores that developed from Banded Iron Formations (BIFs), hematite-rich deposits formed on Mars, corrosion products in power plants and other industrial systems.

  12. Changing CS Features Alters Evaluative Responses in Evaluative Conditioning

    ERIC Educational Resources Information Center

    Unkelbach, Christian; Stahl, Christoph; Forderer, Sabine

    2012-01-01

    Evaluative conditioning (EC) refers to changes in people's evaluative responses toward initially neutral stimuli (CSs) by mere spatial and temporal contiguity with other positive or negative stimuli (USs). We investigate whether changing CS features from conditioning to evaluation also changes people's evaluative response toward these CSs. We used…

  13. Postural responses to changing task conditions.

    PubMed

    Hansen, P D; Woollacott, M H; Debu, B

    1988-01-01

    The experimental goal was to investigate discrepancies in the literature concerning postural adaptation and to determine if the prior presentation of horizontal perturbations affected the amplitude of responses to rotational perturbations. Surface EMG recordings from lower leg muscles (gastrocnemius (GAS) and tibialis anterior (TA)) were recorded in twelve subjects, and the amplitudes of the responses were statistically analyzed. We did not find differences between the responses to rotational perturbations which preceded or followed horizontal perturbations. This finding did not support the hypothesis that differences in the order of presentation of the different types of perturbations accounted for the discrepancies in the literature. Furthermore, our design did not show the progressive elimination of the GAS response within three to five sequential trials. Instead, we found a slow but significant response amplitude reduction over ten trials without yielding a permanent disappearance of the response. When analyzing the GAS responses to the rotational perturbations only, we found two components that contributed to the response reduction: 1) an initial reduction between trials one and subsequent trials, which could be due to habituation of a startle-like response; and 2) a second reduction which was more gradual. Our results also showed an immediate change in the response amplitude on the first trial, when the type of perturbation was changed. This is inconsistent with the view that ankle musculature stretch and joint movement are the primary inputs driving the postural responses. Since small ankle dorsiflexing rotations produced by the platform translations caused large GAS responses while large ankle dorsiflexing rotations produced by direct platform rotations caused small GAS responses, this suggests that multiple sensory inputs contribute to the responses. We propose that an initial compensation to a new perturbation type occurs within the first trial by the

  14. Ultra-oxidized redox conditions in subduction mélanges? Decoupling between oxygen fugacity and oxygen availability in a metasomatic environment

    NASA Astrophysics Data System (ADS)

    Tumiati, Simone; Poli, Stefano; Godard, Gaston; Martin, Silvana; Malaspina, Nadia

    2014-05-01

    The manganese ore of Praborna (Italian Western Alps) is embedded within a metasedimentary sequence belonging to a subduction mélange equilibrated at high-pressure conditions (~2 GPa) during the Alpine orogenesis and record environmental conditions typical for a subducting slab setting. The pervasive veining of the ore and the growth of "pegmatoid" HP minerals suggest an open system with large fluid/rock ratio and a strong interaction with slab-derived fluids. This natural case provides an excellent natural laboratory for the study of the oxygen mobility in subducting oceanic slab mélanges at high-P, fluid-present conditions. The Mn-rich rocks in contact with the underlying sulphide- and magnetite-bearing metabasites, in textural and chemical equilibrium with the veins, contain braunite (Mn2+Mn3+6SiO12) + quartz + pyroxmangite (Mn2+SiO3), and minor hematite, omphacite, the epidote piemontite and spessartine-rich garnet. Similarly to Fe-bearing systems, Mn oxides and silicates can be regarded as natural redox-sensors, capable to monitor a process of fluid infiltration that could fix externally the intensive variable fO2 (or μO2). Sulphides are absent in these Mn-rich rocks, sulphates (barite, celestine) occurring instead together with As- and Sb oxides and silicates. On the basis of the observed assemblages, new thermodynamic calculations show that these mélange rocks are characterized by unrealistic ultra-oxidized states (ΔFMQ up to +12) if the chemical potential of oxygen (or the oxygen fugacity) is accounted for. However, if the molar quantity of oxygen in excess with reference to with reference to a system where all iron and manganese are considered to be ferrous, the ore appears only moderately oxidized, and comparable to typical subduction-slab mafic eclogites. Therefore, oxygen can be hardly considered a perfectly mobile component, even in the most favourable conditions. In the Earth's interior redox reactions take place mainly among solid oxides and

  15. Chromium isotopes in carbonates — A tracer for climate change and for reconstructing the redox state of ancient seawater

    NASA Astrophysics Data System (ADS)

    Frei, R.; Gaucher, C.; Døssing, L. N.; Sial, A. N.

    2011-12-01

    powerful tool for reconstructing the redox state of ancient seawater since positive values indicate that, at least locally, Neoproterozoic shallow ocean waters were sufficiently oxidized to fractionate chromium and/or that oxygen levels of the atmosphere were sufficient to transform Cr(III) into the more mobile hexavalent Cr(VI) formed during weathering processes on land. The fact that 87Sr/ 86Sr values, despite δ 13C fluctuations, remain low (indicative of a strong hydrothermal input into the basin at his time) implies that CO 2 limitation was the cause of negative δ 13C and δ 53Cr excursions in otherwise nutrient rich late Neoproterozoic basins, and that glaciation is only one more consequence of a tectonically driven, biologically mediated system. In such a scenario, glaciation acts as an amplifier of δ 53Cr signals. These signals in marine carbonates are a sensitive tracer for redox processes in the ocean and/or on land and have the potential to contribute significantly, in combination with the other commonly used isotopic tracers, to the reconstruction of climatic changes, particularly those that are associated with major glaciation periods in Earth's history.

  16. Chromium Isotopes in Carbonates - a Tracer for Climate Change and for Reconstructing the Redox state of Ancient Seawater

    NASA Astrophysics Data System (ADS)

    Frei, R.; Gaucher, C.; Dossing, L. N.; Sial, A. N.

    2011-12-01

    the redox state of ancient seawater since positive values indicate that, at least locally, Neoproterozoic shallow ocean waters were sufficiently oxidized to fractionate chromium and/or that oxygen levels of the atmosphere were sufficient to transform Cr(III) into the more mobile hexavalent Cr(VI) formed during weathering processes on land. The fact that 87Sr/86Sr values, despite δ13C fluctuations, remain low (indicative of a strong hydrothermal input into the basin at his time) implies that CO2 limitation was the cause of negative δ13C and δ53Cr excursions in otherwise nutrient rich late Vendian basins, and that glaciation is only one more consequence of a tectonically driven, biologically mediated system. In such a scenario, glaciation acts as an amplifier of δ53Cr signals. These signals in marine carbonates are a sensitive tracer for redox processes in the ocean and/or on land and have the potential to contribute significantly to the reconstruction of climatic changes, particularly those that are associated with major glaciation periods in Earth's history.

  17. 49 CFR 1542.107 - Changed conditions affecting security.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... § 1542.103; or (3) Layout or physical structure of any area under the control of the airport operator... notification of the change condition(s). TSA will notify the airport operator of the disposition of...

  18. 49 CFR 1542.107 - Changed conditions affecting security.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... § 1542.103; or (3) Layout or physical structure of any area under the control of the airport operator... notification of the change condition(s). TSA will notify the airport operator of the disposition of...

  19. 49 CFR 1542.107 - Changed conditions affecting security.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... § 1542.103; or (3) Layout or physical structure of any area under the control of the airport operator... notification of the change condition(s). TSA will notify the airport operator of the disposition of...

  20. 49 CFR 1542.107 - Changed conditions affecting security.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... § 1542.103; or (3) Layout or physical structure of any area under the control of the airport operator... notification of the change condition(s). TSA will notify the airport operator of the disposition of...

  1. 49 CFR 1542.107 - Changed conditions affecting security.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... § 1542.103; or (3) Layout or physical structure of any area under the control of the airport operator... notification of the change condition(s). TSA will notify the airport operator of the disposition of...

  2. Ordovician Jeleniów Claystone Formation of the Holy Cross Mountains, Poland - Reconstruction of Redox Conditions Using Pyrite Framboid Study

    NASA Astrophysics Data System (ADS)

    Smolarek, Justyna; Marynowski, Leszek; Trela, Wiesław

    2014-09-01

    The aim of this research is to reconstruct palaeoredox conditions during sedimentation of the Jeleniów Claystone Formation deposits, using framboid pyrite diameter measurements. Analysis of pyrite framboids diameter distribution is an effective method in the palaeoenvironmental interpretation which allow for a more detailed insight into the redox conditions, and thus the distinction between euxinic, dysoxic and anoxic conditions. Most of the samples is characterized by framboid indicators typical for anoxic/euxinic conditions in the water column, with average (mean) values ranging from 5.29 to 6.02 urn and quite low standard deviation (SD) values ranging from 1.49 to 3.0. The remaining samples have shown slightly higher values of framboid diameter typical for upper dysoxic conditions, with average values (6.37 to 7.20 um) and low standard deviation (SD) values (1.88 to 2.88). From the depth of 75.5 m till the shallowest part of the Jeleniów Claystone Formation, two samples have been examined and no framboids has been detected. Because secondary weathering should be excluded, the lack of framboids possibly indicates oxic conditions in the water column. Oxic conditions continue within the Wólka Formation based on the lack of framboids in the ZB 51.6 sample.

  3. Ordovician Jeleniów Claystone Formation of the Holy Cross Mountains, Poland - Reconstruction of redox conditions using pyrite framboid study

    NASA Astrophysics Data System (ADS)

    Smolarek, Justyna; Marynowski, Leszek; Trela, Wiesław

    2014-09-01

    The aim of this research is to reconstruct palaeoredox conditions during sedimentation of the Jeleniów Claystone Formation deposits, using framboid pyrite diameter measurements. Analysis of pyrite framboids diameter distribution is an effective method in the palaeoenvironmental interpretation which allow for a more detailed insight into the redox conditions, and thus the distinction between euxinic, dysoxic and anoxic conditions. Most of the samples is characterized by framboid indicators typical for anoxic/euxinic conditions in the water column, with average (mean) values ranging from 5.29 to 6.02 μm and quite low standard deviation (SD) values ranging from 1.49 to 3.0. The remaining samples have shown slightly higher values of framboid diameter typical for upper dysoxic conditions, with average values (6.37 to 7.20 μm) and low standard deviation (SD) values (1.88 to 2.88). From the depth of 75.5 m till the shallowest part of the Jeleniów Claystone Formation, two samples have been examined and no framboids has been detected. Because secondary weathering should be excluded, the lack of framboids possibly indicates oxic conditions in the water column. Oxic conditions continue within the Wólka Formation based on the lack of framboids in the ZB 51.6 sample

  4. Evaluation of I/Ca ratios in benthic foraminifera from the Peruvian oxygen minimum zone as proxy for redox conditions in the ambient water masses

    NASA Astrophysics Data System (ADS)

    Glock, N.; Liebetrau, V.; Eisenhauer, A.

    2014-12-01

    Tropical oxygen minimum zones (OMZs) are most important areas of oxygen depletion in today´s oceans and nutrient cycling in these regions has a large socio-economic impact because they account for about 17% of the global commercial fish catches(1). Possibly increasing magnitude and area of oxygen depletion in these regions, might endanger rich pelagic fish habitats in the future threatening the global marine food supply. By the use of a quantitative redox proxy in OMZs, reconstruction of the temporal variation in OMZ extension eventually providing information about past and future changes in oxygenation and the anthropogenic role in the recent trend of expanding OMZs(2). Recent work has shown that iodine/calcium (I/Ca) ratios in marine carbonates are a promising proxy for ambient oxygen concentration(3). Our study explores the correlation of I/Ca ratios in four benthic foraminiferal species (three calcitic, one aragonitic) from the Peruvian OMZ to bottom water oxygen concentrations ([O2]BW) and evaluates foraminiferal I/Ca ratios as a possible redox proxy for the ambient water masses. Our results show that all species have a positive trend in the I/Ca ratios as a function of [O2]BW. Only for the aragonitic species Hoeglundina elegans this trend is not significant. The highest significance has been found for Uvigerina striata (I/Ca = 0.032(±0.004).[O2]BW + 0.29(±0.03), R² = 0.61, F = 75, P < 0.0001). Although I/Ca ratios in benthic foraminifera appear to be a robust redox proxy there are some methodical issues which have to be considered. These "pitfalls" include: (i) the volatility of iodine in acidic solutions, (ii) a species dependency of the I/Ca-[O2]BW relationship which is either related to a strong vital effect or toa species dependency on the calcification depth within sediment, and (iii) the inter-test variability of I/Ca between different specimens from the same species and habitat. (1): FAO FishStat: Fisheries and aquaculture software. In: FAO

  5. Quantitative measures for redox signaling.

    PubMed

    Pillay, Ché S; Eagling, Beatrice D; Driscoll, Scott R E; Rohwer, Johann M

    2016-07-01

    Redox signaling is now recognized as an important regulatory mechanism for a number of cellular processes including the antioxidant response, phosphokinase signal transduction and redox metabolism. While there has been considerable progress in identifying the cellular machinery involved in redox signaling, quantitative measures of redox signals have been lacking, limiting efforts aimed at understanding and comparing redox signaling under normoxic and pathogenic conditions. Here we have outlined some of the accepted principles for redox signaling, including the description of hydrogen peroxide as a signaling molecule and the role of kinetics in conferring specificity to these signaling events. Based on these principles, we then develop a working definition for redox signaling and review a number of quantitative methods that have been employed to describe signaling in other systems. Using computational modeling and published data, we show how time- and concentration- dependent analyses, in particular, could be used to quantitatively describe redox signaling and therefore provide important insights into the functional organization of redox networks. Finally, we consider some of the key challenges with implementing these methods. PMID:27151506

  6. Morphine Induces Redox-Based Changes in Global DNA Methylation and Retrotransposon Transcription by Inhibition of Excitatory Amino Acid Transporter Type 3–Mediated Cysteine Uptake

    PubMed Central

    Trivedi, Malav; Shah, Jayni; Hodgson, Nathaniel; Byun, Hyang-Min

    2014-01-01

    Canonically, opioids influence cells by binding to a G protein–coupled opioid receptor, initiating intracellular signaling cascades, such as protein kinase, phosphatidylinositol 3-kinase, and extracellular receptor kinase pathways. This results in several downstream effects, including decreased levels of the reduced form of glutathione (GSH) and elevated oxidative stress, as well as epigenetic changes, especially in retrotransposons and heterochromatin, although the mechanism and consequences of these actions are unclear. We characterized the acute and long-term influence of morphine on redox and methylation status (including DNA methylation levels) in cultured neuronal SH-SY5Y cells. Acting via μ-opioid receptors, morphine inhibits excitatory amino acid transporter type 3–mediated cysteine uptake via multiple signaling pathways, involving different G proteins and protein kinases in a temporal manner. Decreased cysteine uptake was associated with decreases in both the redox and methylation status of neuronal cells, as defined by the ratios of GSH to oxidized forms of glutathione and S-adenosylmethionine to S-adenosylhomocysteine levels, respectively. Further, morphine induced global DNA methylation changes, including CpG sites in long interspersed nuclear elements (LINE-1) retrotransposons, resulting in increased LINE-1 mRNA. Together, these findings illuminate the mechanism by which morphine, and potentially other opioids, can influence neuronal-cell redox and methylation status including DNA methylation. Since epigenetic changes are implicated in drug addiction and tolerance phenomenon, this study could potentially extrapolate to elucidate a novel mechanism of action for other drugs of abuse. PMID:24569088

  7. The distribution of rare earth elements in groundwaters: assessing the role of source-rock composition, redox changes and colloidal particles

    NASA Astrophysics Data System (ADS)

    Dia, Aline; Gruau, Gérard; Olivié-Lauquet, Gwenaelle; Riou, Christine; Molénat, Jérome; Curmi, Pierre

    2000-12-01

    are seen to vary in phase with both redox changes and DOC, Fe, U and Th content variations. Three REE-rich water samples (one DOC-rich and two DOC-poor) were also filtered through membranes of decreasing pore size (100,000 D, 30,000 D, 5,000 D). The results show that between about 40% to 65% of the REE present in the shallow, DOC-poor groundwater samples are controlled by the colloidal fraction, which is likely to consist in these inorganic waters of a mixture of mineral phases. In the wetland groundwaters, the fraction of REE controlled by microparticles is higher than 65%, which confirms the predominant role of organic colloids as major REE carriers in wetland waters. Using the above data set in conjunction with analyses of soil samples, we show that the deep Ce anomalies found in the upper non organic part of the aquifer are probably not source-rock inherited features: most likely, these anomalies arise from the oxidative precipitation of Ce. The very low REE content displayed by waters flooding the deep fresh schists is interpreted as due to the combined effects of (i) pH variation, (ii) secondary sulfate mineral precipitation and (iii) the trapping of colloids-borne REE by the aquifer-rock pores. Data from wetland groundwaters show that the REE, Fe, U and Th budgets of these waters are mainly controlled by seasonal changes in redox conditions and organic matter content. However, unlike organic-poor waters, it appears difficult to relate the Ce behaviour in these organic-rich waters solely to redox conditions. It is likely that the complexation of Ce by organic colloids in the organic-rich waters may mask redox changes by inhibiting the development of negative Ce anomalies.

  8. General Chemoselective and Redox-Responsive Ligation and Release Strategy

    PubMed Central

    2015-01-01

    We report a switchable redox click and cleave reaction strategy for conjugating and releasing a range of molecules on demand. This chemoselective redox-responsive ligation (CRRL) and release strategy is based on a redox switchable oxime linkage that is controlled by mild chemical or electrochemical redox signals and can be performed at physiological conditions without the use of a catalyst. Both conjugation and release reactions are kinetically well behaved and quantitative. The CRRL strategy is synthetically modular and easily monitored and characterized by routine analytical techniques. We demonstrate how the CRRL strategy can be used for the dynamic generation of cyclic peptides and the ligation of two different peptides that are stable but can be selectively cleaved upon changes in the redox environment. We also demonstrate a new redox based delivery of cargoes to live cells strategy via the CRRL methodology by synthesizing a FRET redox-responsive probe that is selectively activated within a cellular environment. We believe the ease of the CRRL strategy should find wide use in a range of applications in biology, tissue engineering, nanoscience, synthetic chemistry, and material science and will expand the suite of current conjugation and release strategies. PMID:24559434

  9. General chemoselective and redox-responsive ligation and release strategy.

    PubMed

    Park, Sungjin; Westcott, Nathan P; Luo, Wei; Dutta, Debjit; Yousaf, Muhammad N

    2014-03-19

    We report a switchable redox click and cleave reaction strategy for conjugating and releasing a range of molecules on demand. This chemoselective redox-responsive ligation (CRRL) and release strategy is based on a redox switchable oxime linkage that is controlled by mild chemical or electrochemical redox signals and can be performed at physiological conditions without the use of a catalyst. Both conjugation and release reactions are kinetically well behaved and quantitative. The CRRL strategy is synthetically modular and easily monitored and characterized by routine analytical techniques. We demonstrate how the CRRL strategy can be used for the dynamic generation of cyclic peptides and the ligation of two different peptides that are stable but can be selectively cleaved upon changes in the redox environment. We also demonstrate a new redox based delivery of cargoes to live cells strategy via the CRRL methodology by synthesizing a FRET redox-responsive probe that is selectively activated within a cellular environment. We believe the ease of the CRRL strategy should find wide use in a range of applications in biology, tissue engineering, nanoscience, synthetic chemistry, and material science and will expand the suite of current conjugation and release strategies. PMID:24559434

  10. Mixing interfaces, fluxes, residence times and redox conditions of the hyporheic zones induced by dune-like bedforms and ambient groundwater flow

    NASA Astrophysics Data System (ADS)

    Marzadri, Alessandra; Tonina, Daniele; Bellin, Alberto; Valli, Alberto

    2016-02-01

    Recent studies highlighted the importance of the interface between streams and their surrounding sediment, known as the hyporheic zone, where stream waters flow through the alluvium. These pore water fluxes stem from the interaction among streambed morphology, stream hydraulics and surrounding groundwater flow. We analytically model the hyporheic hydraulics induced by a spatially uniform ambient groundwater flow made of a horizontal, underflow, and a vertical, basal, component, which mimics gaining and losing stream conditions. The proposed analytical solution allows to investigate the control of simple hydromorphological quantities on the extent, residence time and redox conditions of the hyporheic zone, and the thickness of the mixing interface between hyporheic and groundwater cells. Our analysis shows that the location of the mixing zone shallows or deepens in the sediment as a function of bedform geometry, surface hydraulic and groundwater flow. The point of stagnation, where hyporheic flow velocities vanish and where the separation surface passes through, is shallower than or coincides with the deepest point of the hyporheic zone only due to underflow. An increase of the ambient flow causes a reduction of the hyporheic zone volume similarly in both losing and gaining conditions. The hyporheic residence time is lognormally distributed under neutral, losing and gaining conditions, with the residence time moments depending on the same set of parameters describing dune morphology and stream flow.