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Sample records for chinetsu shigen seisan

  1. Transcription profile of Escherichia coli: genomic SELEX search for regulatory targets of transcription factors

    PubMed Central

    Ishihama, Akira; Shimada, Tomohiro; Yamazaki, Yukiko

    2016-01-01

    Bacterial genomes are transcribed by DNA-dependent RNA polymerase (RNAP), which achieves gene selectivity through interaction with sigma factors that recognize promoters, and transcription factors (TFs) that control the activity and specificity of RNAP holoenzyme. To understand the molecular mechanisms of transcriptional regulation, the identification of regulatory targets is needed for all these factors. We then performed genomic SELEX screenings of targets under the control of each sigma factor and each TF. Here we describe the assembly of 156 SELEX patterns of a total of 116 TFs performed in the presence and absence of effector ligands. The results reveal several novel concepts: (i) each TF regulates more targets than hitherto recognized; (ii) each promoter is regulated by more TFs than hitherto recognized; and (iii) the binding sites of some TFs are located within operons and even inside open reading frames. The binding sites of a set of global regulators, including cAMP receptor protein, LeuO and Lrp, overlap with those of the silencer H-NS, suggesting that certain global regulators play an anti-silencing role. To facilitate sharing of these accumulated SELEX datasets with the research community, we compiled a database, ‘Transcription Profile of Escherichia coli’ (www.shigen.nig.ac.jp/ecoli/tec/). PMID:26843427

  2. Profiling of Escherichia coli Chromosome database.

    PubMed

    Yamazaki, Yukiko; Niki, Hironori; Kato, Jun-ichi

    2008-01-01

    The Profiling of Escherichia coli Chromosome (PEC) database (http://www.shigen.nig.ac.jp/ecoli/pec/) is designed to allow E. coli researchers to efficiently access information from functional genomics studies. The database contains two principal types of data: gene essentiality and a large collection of E. coli genetic research resources. The essentiality data are based on data compilation from published single-gene essentiality studies and on cell growth studies of large-deletion mutants. Using the circular and linear viewers for both whole genomes and the minimal genome, users can not only gain an overview of the genome structure but also retrieve information on contigs, gene products, mutants, deletions, and so forth. In particular, genome-wide exhaustive mutants are an essential resource for studying E. coli gene functions. Although the genomic database was constructed independently from the genetic resources database, users may seamlessly access both types of data. In addition to these data, the PEC database also provides a summary of homologous genes of other bacterial genomes and of protein structure information, with a comprehensive interface. The PEC is thus a convenient and useful platform for contemporary E. coli researchers. PMID:18392982

  3. Transcription profile of Escherichia coli: genomic SELEX search for regulatory targets of transcription factors.

    PubMed

    Ishihama, Akira; Shimada, Tomohiro; Yamazaki, Yukiko

    2016-03-18

    Bacterial genomes are transcribed by DNA-dependent RNA polymerase (RNAP), which achieves gene selectivity through interaction with sigma factors that recognize promoters, and transcription factors (TFs) that control the activity and specificity of RNAP holoenzyme. To understand the molecular mechanisms of transcriptional regulation, the identification of regulatory targets is needed for all these factors. We then performed genomic SELEX screenings of targets under the control of each sigma factor and each TF. Here we describe the assembly of 156 SELEX patterns of a total of 116 TFs performed in the presence and absence of effector ligands. The results reveal several novel concepts: (i) each TF regulates more targets than hitherto recognized; (ii) each promoter is regulated by more TFs than hitherto recognized; and (iii) the binding sites of some TFs are located within operons and even inside open reading frames. The binding sites of a set of global regulators, including cAMP receptor protein, LeuO and Lrp, overlap with those of the silencer H-NS, suggesting that certain global regulators play an anti-silencing role. To facilitate sharing of these accumulated SELEX datasets with the research community, we compiled a database, 'Transcription Profile of Escherichia coli' (www.shigen.nig.ac.jp/ecoli/tec/). PMID:26843427

  4. A novel, simple, high-throughput method for isolation of genome-wide transposon insertion mutants of Escherichia coli K-12.

    PubMed

    Miki, Takeyoshi; Yamamoto, Yoshihiro; Matsuda, Hideo

    2008-01-01

    We developed a novel, simple, high-throughput method for isolation of genome-wide transposon insertion mutants of Escherichia coli K-12. The basic idea of the method is to randomly disrupt the genes on the DNA fragments cloned on the Kohara library by inserting a mini-transposon first, and then transfer the disrupted genes from the lambda vector to the E. coli chromosome by homologous recombination. Using this method, we constructed a set of 8402 Km(r) cis-diploid mutants harboring a mini-Tn10 insertion mutation and the corresponding wild-type gene on a chromosome, as well as a set of 6954 haploid mutants derived from the cis-diploid mutants. The major advantage of the strategy used is that the indispensable genes or sites for growth can be identified. Preliminary results suggest that 415 open reading frames are indispensable for growth in E. coli cells. A total of 6404 haploid mutants were deposited to Genetic Strains Research Center, National Institute of Genetics, Japan (Chapter 26) and are available for public distribution upon request (http://shigen.lab.nig.ac.jp/ecoli/strain/nbrp/resource.jsp). PMID:18392969

  5. OryzaGenome: Genome Diversity Database of Wild Oryza Species

    PubMed Central

    Ohyanagi, Hajime; Ebata, Toshinobu; Huang, Xuehui; Gong, Hao; Fujita, Masahiro; Mochizuki, Takako; Toyoda, Atsushi; Fujiyama, Asao; Kaminuma, Eli; Nakamura, Yasukazu; Feng, Qi; Wang, Zi-Xuan; Han, Bin; Kurata, Nori

    2016-01-01

    The species in the genus Oryza, encompassing nine genome types and 23 species, are a rich genetic resource and may have applications in deeper genomic analyses aiming to understand the evolution of plant genomes. With the advancement of next-generation sequencing (NGS) technology, a flood of Oryza species reference genomes and genomic variation information has become available in recent years. This genomic information, combined with the comprehensive phenotypic information that we are accumulating in our Oryzabase, can serve as an excellent genotype–phenotype association resource for analyzing rice functional and structural evolution, and the associated diversity of the Oryza genus. Here we integrate our previous and future phenotypic/habitat information and newly determined genotype information into a united repository, named OryzaGenome, providing the variant information with hyperlinks to Oryzabase. The current version of OryzaGenome includes genotype information of 446 O. rufipogon accessions derived by imputation and of 17 accessions derived by imputation-free deep sequencing. Two variant viewers are implemented: SNP Viewer as a conventional genome browser interface and Variant Table as a text-based browser for precise inspection of each variant one by one. Portable VCF (variant call format) file or tab-delimited file download is also available. Following these SNP (single nucleotide polymorphism) data, reference pseudomolecules/scaffolds/contigs and genome-wide variation information for almost all of the closely and distantly related wild Oryza species from the NIG Wild Rice Collection will be available in future releases. All of the resources can be accessed through http://viewer.shigen.info/oryzagenome/. PMID:26578696

  6. Seismicity in 2010 and major earthquakes recorded and located in Costa Rica from 1983 until 2012, by the local OVSICORI-UNA seismic network

    NASA Astrophysics Data System (ADS)

    Ronnie, Q.; Segura, J.; Burgoa, B.; Jimenez, W.; McNally, K. C.

    2013-05-01

    This work is the result of the analysis of existing information in the earthquake database of the Observatorio Sismológico y Vulcanológico de Costa Rica, Universidad Nacional (OVSICORI-UNA), and seeks disclosure of basic seismological information recorded and processed in 2010. In this year there was a transition between the software used to record, store and locate earthquakes. During the first three months of 2010, we used Earthworm (http://folkworm.ceri.memphis.edu/ew-doc), SEISAN (Haskov y Ottemoller, 1999) and Hypocenter (Lienert y Haskov, 1995) to capture, store and locate the earthquakes, respectively; in April 2010, ANTELOPE (http://www.brtt.com/software.html) start to be used for recording and storing and GENLOC (Fan at al, 2006) and LOCSAT (Bratt and Bache 1988), to locate earthquakes. GENLOC was used for local events and LOCSAT for regional and distant earthquakes. The local earthquakes were located using the 1D velocity model of Quintero and Kissling (2001) and for regional and distant earthquakes IASPEI91 (Kennett and Engdahl, 1991) was used. All the events for 2010 and shown in this work were rechecked by the authors. We located 3903 earthquakes in and around Costa Rica and 746 regional and distant seismic events were recorded (see Figure 1). In this work we also give a summary of major earthquakes recorded and located by OVSICORI-UNA network between 1983 and 2012. Seismicity recorded by OVSICORI-UNA network in 2010

  7. Super-Sonograms and graphical seismic source locations: Facing the challenge of real-time data processing in an OSI SAMS installation

    NASA Astrophysics Data System (ADS)

    Joswig, Manfred

    2010-05-01

    The installation and operation of an OSI seismic aftershock monitoring system (SAMS) is bound by strict time constraints: 30+ small arrays must be set up within days, and data screening must cope with the daily seismogram input. This is a significant challenge since any potential, single ML -2.0 aftershock from a potential nuclear test must be detected and discriminated against a variety of higher-amplitude noise bursts. No automated approach can handle this task to date; thus some 200 traces of 24/7 data must be screened manually with a time resolution sufficient to recover signals of just a few sec duration, and with tiny amplitudes just above the threshold of ambient noise. Previous tests confirmed that this task can not be performed by time-domain signal screening via established seismological processing software, e.g. PITSA, SEISAN, or GEOTOOLS. Instead, we introduced 'SonoView', a seismic diagnosis tool based on a compilation of array traces into super-sonograms. Several hours of cumulative array data can be displayed at once on a single computer screen - without sacrifying the necessary detectability of few-sec signals. Then 'TraceView' will guide the analyst to select the relevant traces with best SNR, and 'HypoLine' offers some interactive, graphical location tools for fast epicenter estimates and source signature identifications. A previous release of this software suite was successfully applied at IFE08 in Kasakhstan, and supported the seismic sub-team of OSI in its timely report compilation.

  8. The Geometry of the Subducting Slabs Beneath the PRVI Microplate Based on 3D Tomography

    NASA Astrophysics Data System (ADS)

    Xu, X.; Keller, G. R.; Holland, A. A.; Keranen, K. M.; Li, H.

    2011-12-01

    The Puerto Rico and the Virgin Islands (PRVI) microplate is located between two subduction zones, with the Puerto Rico trench to the north and the Muertos trough to the south. The Puerto Rico trench is caused by southward-directed subduction of the North American Plate, and the Muertos trough is the northern boundary of the Caribbean Plate. There is no active volcanism on Puerto Rico; however, earthquake depths and seismic tomography imply that the slab of Caribbean plate continues northward beneath Puerto Rico. Puerto Rico overlies these two slabs with extension to both the west (Mona Passage) and southeast (Anacapa Passage). The cause of the extension is unknown, but GPS measurements show that Puerto Rico is experiencing anti-clockwise rotation, and the extension associated with the Anacapa Passage may be produced by this rotation. To the west, it is debated whether the Mona Passage is a boundary between two micro-plates or simple a local rift basin. To address the sources of the extension and the cause of the rotation, we are investigating if the deep structures can be the dynamic source for the observed kinematic movements. We collected data on earthquakes occurring between 2009-2011 in the PRVI region and relocated them using the SEISAN code provided by the Institute of Solid Earth Physics, University of Bergen. The FMTOMO code from Australian National University was used for 3D tomography from P and S wave arrival times. By comparing the relocated epicenters and the 3D tomography results, the subducting slabs were identified. When integrated with the results of previous studies, the geometric model of the slabs is a critical key to understanding the evolution of the PRVI microplate in the past and the future.

  9. Identification of Focal Mechanisms of Seisms Occurring in the San Salvador Volcano-Ilopango Lake Area Between 1994 and March 2005

    SciTech Connect

    Maria Mendez Martinez, Luz de; Portillo, Mercy

    2009-04-19

    We studied the geographic area located in the central part of El Salvador, between the San Salvador Volcano (Quezaltepec) and Ilopango Lake. Its latitude is between 13 deg. 36' and 13 deg. 54', and longitude is between -89 deg. 18' and -88 deg. 57'. This area is directly affected by the WNW axis, the most prominent weak tectonic system in the region. Our research aimed to determine the focal mechanisms of seisms occurring in the studied area between 1994 and March 2005. Our analysis provided information about displacement types of the geological faults, using the wave impulse P method and computer applications ARCGIS and SEISAN, with the subroutine FOCMEC. Information of the studied seisms was obtained from the National Service of Territorial Studies (SNET) database. Geographic models used in the preparation of maps are from the geographic information system of the School of Physics at the University of El Salvador. The 37 focal mechanisms on the map of faults were identified in digital seismographs to determinate the arrival polarity of the wave P for each seism station. Data from the focal mechanisms were analyzed and correlated with their replications. The analysis allowed us to identify evidences to consider the fault continuity not reported by the last geological mission in El Salvador conducted in the 1970s. The fault continuity is located northwest of the studied geographical area, between San Salvador City and the San Salvador Volcano. The compression and strain axes for this area are two main horizontal force axes. The average orientation for the strain axis is NNE-SSW, and WNW-SEE for the compression axis. There is also important seismic activity in the Ilopango Lake and surrounding area. However, data did not allow us to make any inference. The tensors distribution resulted in a high dispersion corresponding to typical fauces models.

  10. The Colombia Seismological Network

    NASA Astrophysics Data System (ADS)

    Blanco Chia, J. F.; Poveda, E.; Pedraza, P.

    2013-05-01

    The latest seismological equipment and data processing instrumentation installed at the Colombia Seismological Network (RSNC) are described. System configuration, network operation, and data management are discussed. The data quality and the new seismological products are analyzed. The main purpose of the network is to monitor local seismicity with a special emphasis on seismic activity surrounding the Colombian Pacific and Caribbean oceans, for early warning in case a Tsunami is produced by an earthquake. The Colombian territory is located at the South America northwestern corner, here three tectonic plates converge: Nazca, Caribbean and the South American. The dynamics of these plates, when resulting in earthquakes, is continuously monitored by the network. In 2012, the RSNC registered in 2012 an average of 67 events per day; from this number, a mean of 36 earthquakes were possible to be located well. In 2010 the network was also able to register an average of 67 events, but it was only possible to locate a mean of 28 earthquakes daily. This difference is due to the expansion of the network. The network is made up of 84 stations equipped with different kind of broadband 40s, 120s seismometers, accelerometers and short period 1s sensors. The signal is transmitted continuously in real-time to the Central Recording Center located at Bogotá, using satellite, telemetry, and Internet. Moreover, there are some other stations which are required to collect the information in situ. Data is recorded and processed digitally using two different systems, EARTHWORM and SEISAN, which are able to process and share the information between them. The RSNC has designed and implemented a web system to share the seismological data. This innovative system uses tools like Java Script, Oracle and programming languages like PHP to allow the users to access the seismicity registered by the network almost in real time as well as to download the waveform and technical details. The coverage

  11. Earthquake Analysis (EA) Software for The Earthquake Observatories

    NASA Astrophysics Data System (ADS)

    Yanik, K.; Tezel, T.

    2009-04-01

    -mail, data reading from anywhere that has ethernet connection and store the results in same centre. The Earthqukae Analysis (EA) program was developed considering above facilities. Microsoft Visual Basic 6.0 and Microsoft GDI tools were used as a basement for program development. EA program can image five different seismic formats (gcf, suds, seisan, sac, nanometrics-y) without any conversion and use all seismic process facilities that are filtering (band-pass, low-pass, high-pass), fast fourier transform, offset adjustment etc.

  12. Seismicity at Baru Volcano, Western Panama, Panama

    NASA Astrophysics Data System (ADS)

    Camacho, E.; Novelo-Casanova, D. A.; Tapia, A.; Rodriguez, A.

    2008-12-01

    The Baru volcano in Western Panama (8.808°N, 82.543°W) is a 3,475 m high strato volcano that lies at about 50 km from the Costa Rican border. The last major eruptive event at this volcano occurred c.1550 AD and no further eruptive activity from that time is known. Since the 1930´s, approximately every 30 years a series of seismic swarms take place in the surroundings of the volcanic edifice. Theses swarms last several weeks alarming the population who lives near the volcano. The last of these episodes occurred on May 2006 and lasted one and a half months. More than 20,000 people live adjacent to the volcano and any future eruption has the potential to be very dangerous. In June 2007, a digital seismic monitoring network of ten stations, linked via internet, was installed around the volcano in a collaborative project between the University of Panama and the Panamanian Government. The seismic data acquisition at the sites is performed using LINUX-SEISLOG and the events are recorded by four servers at different locations using the Earth Worm system. In this work we analyze the characteristics of the volcano seismicity recorded from May 4th, 2006 to July 31st, 2008 by at least 4 stations and located at about 15 km from the summit. To determine the seismic parameters, we tested several crustal velocity models and used the seismic analysis software package SEISAN. Our final velocity model was determined using seismic data for the first four km obtained from a temporal seismic network deployed in 1981 by the British Geological Survey (BGS) as part of geothermal studies conducted at Cerro Pando, Western Panama Highlands. Our results indicate that all the events recorded in the quadrant 8.6-9.0°N and 82.2-82.7°W are located in the depth range of 0.1 to 8 km. Cross sections show vertical alignments of hypocenters below the summit although most of the seismicity is concentrated in its eastern flank reaching the town of Boquete. All the calculated focal mechanisms are of

  13. Tomographically-imaged subducted slabs and magmatic history of Caribbean and Pacific subduction beneath Colombia

    NASA Astrophysics Data System (ADS)

    Bernal-Olaya, R.; Mann, P.; Vargas, C. A.; Koulakov, I.

    2013-12-01

    We define the length and geometry of eastward and southeastward-subducting slabs beneath northwestern South America in Colombia using ~100,000 earthquake events recorded by the Colombian National Seismic Network from 1993 to 2012. Methods include: hypocenter relocation, compilation of focal mechanisms, and P and S wave tomographic calculations performed using LOTOS and Seisan. The margins of Colombia include four distinct subduction zones based on slab dip: 1) in northern Colombia, 12-16-km-thick oceanic crust subducts at a modern GPS rate of 20 mm/yr in a direction of 110 degrees at a shallow angle of 8 degrees; as a result of its low dip, Pliocene-Pleistocene volcanic rocks are present 400 km from the frontal thrust; magmatic arc migration to the east records 800 km of subduction since 58 Ma ago (Paleocene) with shallow subduction of the Caribbean oceanic plateau starting ~24-33 Ma (Miocene); at depths of 90-150 km, the slab exhibits a negative velocity anomaly we associate with pervasive fracturing; 2) in the central Colombia-Panama area, we define an area of 30-km-thick crust of the Panama arc colliding/subducting at a modern 30/mm in a direction of 95 degrees; the length of this slab shows subduction/collision initiated after 20 Ma (Middle Miocene); we call this feature the Panama indenter since it has produced a V-shaped indentation of the Colombian margin and responsible for widespread crustal deformation and topographic uplift in Colombia; an incipient subduction area is forming near the Panama border with intermediate earthquakes at an eastward dip of 70 degrees to depths of ~150 km; this zone is not visible on tomographic images; 3) a 250-km-wide zone of Miocene oceanic crust of the Nazca plate flanking the Panama indenter subducts at a rate of 25 mm/yr in a direction of 55 degrees and at a normal dip of 40 degrees; the length of this slab suggests subduction began at ~5 Ma; 4) the Caldas tear defines a major dip change to the south where a 35 degrees

  14. Evolution of the Earthquake Catalog in Central America

    NASA Astrophysics Data System (ADS)

    Rojas, W.; Camacho, E. I.; Marroquín, G.; Molina, E.; Talavera, E.; Benito, M. B.; Lindholm, C.

    2013-05-01

    Central America (CA) is known as a seismically active region in which several historic destructive earthquakes have occurred. This fact has promoved the development of seismic hazard studies that provide necessary estimates for decision making and risk assessment efforts, requiring a complete and standardized seismic catalog. With this aim, several authors have contributed to the study of the historical seismicity of Central America (e.g. Grases, Feldaman; White y Harlow, 1993; White et al. 2004; Ambraseys y Adams, 2001; Peraldo y Montero, 1999), who complied historical data. A first catalogue was developed by Rojas (1993) that comprises the 1522 to 1993 period. This information was integrated in 2007, together with data from the International Seismological Centre (CASC) and the national catalogs of CA countries in a new regional catalogue. Since 2007 a continuous effort has been done in order to complete and update this CA earthquake catalog. In particular, two workshops were held in 2008 and 2011 in the Universidad Politécnica de Madrid (Spain), joining experts from the different CA countries who worked each one in its own catalogue covering the entire region and the border with northwestern Colombia and southern Mexico. These national catalogues were later integrated in a common regional catalogue in SEISAN format. At this aim it was necessary to solve some problems, like to avoid duplicity of events, specially close to the boundaries, to consider the different scales of magnitude adopted by different countries, to take into account the completeness by the different national networks, etc. Some solutions were adopted for obtaining a homogenized catalogue to Mw, containing historical and instrumental events with Mw > 3.5 from 1522 up to 2011. The catalogue updated to December 2007 was the basis for the first regional hazard study carried out by Benito et al., (2011) as part of the collaborative RESIS II project under coordination of NORSAR. The ones updated to

  15. CRISIS2012: An Updated Tool to Compute Seismic Hazard

    NASA Astrophysics Data System (ADS)

    Ordaz, M.; Martinelli, F.; Meletti, C.; D'Amico, V.

    2013-05-01

    CRISIS is a computer tool for probabilistic seismic hazard analysis (PSHA), whose development started in the late 1980's at the Instituto de Ingeniería, UNAM, Mexico. It started circulating outside the Mexican borders at the beginning of the 1990's, when it was first distributed as part of SEISAN tools. Throughout the years, CRISIS has been used for seismic hazard studies in several countries in Latin America (Mexico, Guatemala, Belize, El Salvador, Honduras, Nicaragua, Costa Rica, Panama, Colombia, Venezuela, Ecuador, Peru, Argentina and Chile), and in many other countries of the World. CRISIS has always circulated free of charge for non-commercial applications. It is worth noting that CRISIS has been mainly written by people that are, at the same time, PSHA practitioners. Therefore, the development loop has been relatively short, and most of the modifications and improvements have been made to satisfy the needs of the developers themselves. CRISIS has evolved from a rather simple FORTRAN code to a relatively complex program with a friendly graphical interface, able to handle a variety of modeling possibilities for source geometries, seismicity descriptions and ground motion prediction models (GMPM). We will describe some of the improvements made for the newest version of the code: CRISIS 2012.These improvements, some of which were made in the frame of the Italian research project INGV-DPC S2 (http://nuovoprogettoesse2.stru.polimi.it/), funded by the Dipartimento della Protezione Civile (DPC; National Civil Protection Department), include: A wider variety of source geometries A wider variety of seismicity models, including the ability to handle non-Poissonian occurrence models and Poissonian smoothed-seismicity descriptions. Enhanced capabilities for using different kinds of GMPM: attenuation tables, built-in models and generalized attenuation models. In the case of built-in models, there is, by default, a set ready to use in CRISIS, but additional custom GMPMs

  16. The Waveform Suite: A robust platform for accessing and manipulating seismic waveforms in MATLAB

    NASA Astrophysics Data System (ADS)

    Reyes, C. G.; West, M. E.; McNutt, S. R.

    2009-12-01

    The Waveform Suite, developed at the University of Alaska Geophysical Institute, is an open-source collection of MATLAB classes that provide a means to import, manipulate, display, and share waveform data while ensuring integrity of the data and stability for programs that incorporate them. Data may be imported from a variety of sources, such as Antelope, Winston databases, SAC files, SEISAN, .mat files, or other user-defined file formats. The waveforms being manipulated in MATLAB are isolated from their stored representations, relieving the overlying programs from the responsibility of understanding the specific format in which data is stored or retrieved. The waveform class provides an object oriented framework that simplifies manipulations to waveform data. Playing with data becomes easier because the tedious aspects of data manipulation have been automated. The user is able to change multiple waveforms simultaneously using standard mathematical operators and other syntactically familiar functions. Unlike MATLAB structs or workspace variables, the data stored within waveform class objects are protected from modification, and instead are accessed through standardized functions, such as get and set; these are already familiar to users of MATLAB’s graphical features. This prevents accidental or nonsensical modifications to the data, which in turn simplifies troubleshooting of complex programs. Upgrades to the internal structure of the waveform class are invisible to applications which use it, making maintenance easier. We demonstrate the Waveform Suite’s capabilities on seismic data from Okmok and Redoubt volcanoes. Years of data from Okmok were retrieved from Antelope and Winston databases. Using the Waveform Suite, we built a tremor-location program. Because the program was built on the Waveform Suite, modifying it to operate on real-time data from Redoubt involved only minimal code changes. The utility of the Waveform Suite as a foundation for large

  17. Seismicity And Accretion Processes Along The Mid-Atlantic Ridge south of the Azores using data from the MARCHE Autonomous Hydrophone Array

    NASA Astrophysics Data System (ADS)

    Perrot, Julie; Cevatoglu, Melis; Cannat, Mathilde; Escartin, Javier; Maia, Marcia; Tisseau, Chantal; Dziak, Robert; Goslin, Jean

    2013-04-01

    The seismicity of the South Atlantic Ocean has been recorded by the MARCHE network of 4 autonomous underwater hydrophones (AUH) moored within the SOFAR channel on the flanks of the Mid-Atlantic Ridge (MAR). The instruments were deployed south of the Azores Plateau between 32° and 39°N from July 2005 to August 2008. The low attenuation properties of the SOFAR channel for earthquake T-wave propagation result in a detection threshold reduction from a magnitude completeness level (Mc) of ~4.3 for MAR events recorded by the land-based seismic networks to Mc=2.1 using this hydrophone array. A spatio-temporal analysis has been performed among the 5600 events recorded inside the MARCHE array. Most events are distributed along the ridge between lat. 39°N on the Azores Platform and the Rainbow (36°N) segment. In the hydrophone catalogue, acoustic magnitude (Source Level, SL) is used as a measure of earthquake size. The source level above which the data set is complete is SLc=205 dB. We look for seismic swarms using the cluster software of the SEISAN package. The criterion used are a minimum SL of 210 to detect a possible mainshock, and a radius of 30 km and a time window of 40 days after this mainshock (Cevatoglu, 2010, Goslin et al., 2012). 7 swarms with more than 15 events are identified using this approach between 32°et 39°N of latitude. The maximum number of earthquake in a swarm is 57 events. This result differs from the study of Simao et al. (2010) as we processed a further year of data and selected sequences with fewer events. Looking at the distribution of the SL as a function of time after the mainshock, we discuss the possible mechanism of these earthquakes : tectonic events with a "mainshock-aftershock" distribution fitting a modified Omori law or volcanic events showing more constant SL values. We also present the geophysical setting of these 7 swarms, using gravity, bathymetry, and available local geological data. This study illustrates the potential of

  18. Seismic monitoring at Deception Island volcano (Antarctica): the 2010-2011 survey

    NASA Astrophysics Data System (ADS)

    Martín, R.; Carmona, E.; Almendros, J.; Serrano, I.; Villaseñor, A.; Galeano, J.

    2012-04-01

    the seismic activity and an efficient seismo-volcanic surveillance. The data are processed and analyzed using the SEISAN database management software. In addition to the seismic network, we deployed a small-aperture seismic array south of Fumarole Bay. It is composed by 9 vertical and 1 three-component short-period stations. The 24-bit data acquisition system samples these 12 channels at 100 sps. There is also a permanent seismic station operating since 2008 and located near GdC, that is very useful for the preliminary evaluation of the seismicity at the start of the survey. This station is composed by a 16-s electrolytic seismometer (Eentec SP400) and a 24-bit datalogger (Eentec DR4000) sampling at 100 sps. During the 2010-2011 survey we identified 33 regional earthquakes, 80 volcano-tectonic (VT) earthquakes, and 929 long-period (LP) events. The volcanic alert system has remained green (the lowest level) at all times. The seismic activity has been similar to previous surveys and remained within limits that are normal for the island.

  19. Attenuation Characteristics of the Armutlu Peninsula (NW Turkey) Using Coda Q

    NASA Astrophysics Data System (ADS)

    Yavuz, Evrim; Çaka, Deniz; Tunç, Berna; Woith, Heiko; Gottfried Lühr, Birger; Barış, Şerif

    2016-04-01

    Attenuation characteristic of seismic waves was determined using coda Q in the frame of MARsite (MARsite has received funding from the European Union's Seventh Programme for research, technological development and demonstration under grant agreement No 308417). Data from 82 earthquakes recorded in 2013-2014 in the Armutlu Peninsula and its vicinity by 9 ARNET seismic stations were used for processing. The earthquake magnitudes (Ml) and depths vary from 1.5 to 3.7 and 1.2-16.9 km, respectively. Epicentral distances closer than 90 km were selected to ensure better signal-to-noise ratios. Lapse times between 20 seconds and 40 seconds at intervals of 5 seconds were used for the calculation of the coda wave quality factor. The coda windows were filtered at central frequencies of 1.5, 3, 6, 9 and 12 Hz bandpass filter. To obtain reliable results, only data with signal-to-noise ratios greater than 5 and correlation coefficents higher than 0.7 were used. The SEISAN software and one of its subroutines (CODAQ) were used for data processing and analyses. In the whole study area, Qc=(51±4)f^(0.91±0.04) for 20 seconds, Qc=(77±7)f^(0.80±0.04) for 30 seconds and Qc=(112±13)f^(0.72±0.06) for 40 seconds lapse times are obtained for coda wave quality factor. The observed quality factor is dependent on frequency and lapse time. The results indicate that the upper lithosphere is more heterogeneous and seismically more active than the lower lithosphere as expected in the region which is tectonically complex refering to the effects of the North Anatolian Fault Zone. By considering earthquake clusters and recorded stations, the scattering area was drawn. The intersection of the scattered areas for 20 seconds lapse time is covering all stations. Quality factor in 1 Hz and frequency dependent values were calculated separately and for the intersection of all scattered areas. Calculated Qo and n values of the intersection area are 50 and 0.89, respectively. Hence, the Qo and n values

  20. Tectonics and Earthquake Source Parameters in the Isthmus of Tehuantepec, Mexico: A Microseismic Study

    NASA Astrophysics Data System (ADS)

    Chavez, M.

    2002-12-01

    Tectonics and earthquake source parameters in the Isthmus of Tehuantepec, Mexico- A microseismic study The Isthmus of Tehuantepec (IT) is located in southeastern Mexico where the Cocos, the Caribbean and the North American plates converge. The seismicity of the region has been recently studied, based on the recordings obtained during a microearthquake campaign carried out during the fall of 1995, preliminary results were presented previously (Chavez et al. EOS, 78, 46, 1997; EOS, 80, 46, 1999; EOS, 81, 48, 2000). Herewith, we present the latest results obtained from the processing, with the code SEISAN (Havskov, 1995, 1997), of about 200 events (out of more than 900) located with an RMS œ 0.5 s. The source parameters of 44 of them were estimated. Among other results, the following can be mentioned: 1) 30 percent of the located events are shallow (Hœ50 Km), 30percent with depths between 50 and 100 Km, and the rest with H3 100 Km; 2) The errors in their Latitudes, Longitudes and Depths best fitted the lognormal and inverse Gaussian distributions with standard deviations of about 5 Km; 3) The shallow seismic activity occurs mainly in the Tehuantepec Gulf, parallel to the Middle American Trench, as well as in the Central and Northern parts of the IT. Under the latter shallow events, we confirmed the existance of the so-called Central Seismic Cluster of the IT (Ponce et al., 1992) at a depth of about 120 Km and found another one south of Cuauthemoc (170 N, -950 W) at a depth of 100 Km; 4) The intense deformation undergoing in the Cocos plate in the IT region was also confirmed by the its gradual, but sustancial, inclination angle from west to east and south to north in the NE 450 direction (Burbach et al., 1984, Ponce et al. 1992); 5) From the 44 fault plane solutions (fps) found, about 46% were normal and the rest had a thrust fps. The events with a normal fps are located in the central and southern parts of the IT; 6) The T axis directions of the former are E-W, N