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Sample records for cim centrum delft

  1. Use of the CIM Ontology

    SciTech Connect

    Neumann, Scott; Britton, Jay; Devos, Arnold N.; Widergren, Steven E.

    2006-02-08

    There are many uses for the Common Information Model (CIM), an ontology that is being standardized through Technical Committee 57 of the International Electrotechnical Commission (IEC TC57). The most common uses to date have included application modeling, information exchanges, information management and systems integration. As one should expect, there are many issues that become apparent when the CIM ontology is applied to any one use. Some of these issues are shortcomings within the current draft of the CIM, and others are a consequence of the different ways in which the CIM can be applied using different technologies. As the CIM ontology will and should evolve, there are several dangers that need to be recognized. One is overall consistency and impact upon applications when extending the CIM for a specific need. Another is that a tight coupling of the CIM to specific technologies could limit the value of the CIM in the longer term as an ontology, which becomes a larger issue over time as new technologies emerge. The integration of systems is one specific area of interest for application of the CIM ontology. This is an area dominated by the use of XML for the definition of messages. While this is certainly true when using Enterprise Application Integration (EAI) products, it is even more true with the movement towards the use of Web Services (WS), Service-Oriented Architectures (SOA) and Enterprise Service Buses (ESB) for integration. This general IT industry trend is consistent with trends seen within the IEC TC57 scope of power system management and associated information exchange. The challenge for TC57 is how to best leverage the CIM ontology using the various XML technologies and standards for integration. This paper will provide examples of how the CIM ontology is used and describe some specific issues that should be addressed within the CIM in order to increase its usefulness as an ontology. It will also describe some of the issues and challenges that will

  2. Distributed job scheduling in MetaCentrum

    NASA Astrophysics Data System (ADS)

    Tóth, Šimon; Ruda, Miroslav

    2015-05-01

    MetaCentrum - The Czech National Grid provides access to various resources across the Czech Republic. The utilized resource management and scheduling system is based on a heavily modified version of the Torque Batch System. This open source resource manager is maintained in a local fork and was extended to facilitate the requirements of such a large installation. This paper provides an overview of unique features deployed in MetaCentrum. Notably, we describe our distributed setup that encompasses several standalone independent servers while still maintaining full cooperative scheduling across the grid. We also present the benefits of our virtualized infrastructure that enables our schedulers to dynamically request ondemand virtual machines, that are then used to facilitate the varied requirements of users in our system, as well as enabling support for user requested virtual clusters that can be further interconnected using a private VLAN.

  3. CIM in space: Corporate Information Management (CIM) implications for space-based information systems

    NASA Astrophysics Data System (ADS)

    Mock, Richard V.

    1993-04-01

    This paper describes the DOD corporate information management (CIM) initiative, space forces, and space-based information systems used by the DOD. It then describes implications of CIM in the space industry. CIM is defined as a philosophy which has management and technical components. The CIM management philosophy includes concepts for standardization, system engineering, and the use of commercial systems and technology. The technical component uses the information engineering discipline to improve business processes. The paper provides examples of the CIM management philosophy in operation as well as opportunities for CIM application. Information engineering is described as it applies to space-based information systems. The appendix includes an illustrative example of the integrated definition (IDEF) methodology applied to the tactical warning/attack assessment mission.

  4. Delft Mass Transport model DMT-2

    NASA Astrophysics Data System (ADS)

    Ditmar, Pavel; Hashemi Farahani, Hassan; Inacio, Pedro; Klees, Roland; Zhao, Qile; Guo, Jing; Liu, Xianglin; Sun, Yu; Riva, Ricardo; Ran, Jiangjun

    2013-04-01

    Gravity Recovery And Climate Experiment (GRACE) satellite mission has enormously extended our knowledge of the Earth's system by allowing natural mass transport of various origin to be quantified. This concerns, in particular, the depletion and replenishment of continental water stocks; shrinking of polar ice sheets; deformation of the Earth's crust triggered by large earthquakes, and isostatic adjustment processes. A number of research centers compute models of temporal gravity field variations and mass transport, using GRACE data as input. One of such models - Delft Mass Transport model - is being produced at the Delft University of Technology in collaboration with the GNSS Research Center of Wuhan University. A new release of this model, DMT-2, has been produced on the basis of a new (second) release of GRACE level-1b data. This model consists of a time-series of monthly solutions spanning a time interval of more than 8 years, starting from Feb. 2003. Each solution consists of spherical harmonic coefficients up to degree 120. Both unconstrained and optimally filtered solutions are obtained. The most essential improvements of the DMT-2 model, as compared to its predecessors (DMT-1 and DMT-1b), are as follows: (i) improved estimation and elimination of low-frequency noise in GRACE data, so that strong mass transport signals are not damped; (ii) computation of accurate stochastic models of data noise for each month individually with a subsequent application of frequency-dependent data weighting, which allows statistically optimal solutions to be compiled even if data noise is colored and gradually changes in time; (iii) optimized estimation of accelerometer calibration parameters; (iv) incorporation of degree 1 coefficients estimated with independent techniques; (v) usage of state-of-the-art background models to de-alias GRACE data from rapid mass transport signals (this includes the EOT11a model of ocean tides and the latest release of the AOD1B product describing

  5. Agility enabled by the SEMATECH CIM framework

    NASA Astrophysics Data System (ADS)

    Hawker, Scott; Waskiewicz, Fred

    1997-01-01

    The survivor in today's market environment is agile: able to survive and thrive in a market place marked by rapid, continuous change. For manufacturers, this includes an ability to rapidly develop, deploy and reconfigure manufacturing information and control systems. The SEMATECH CIM framework defines an application integration architecture and standard application components that enable agile manufacturing information and control systems. Further, the CIM framework and its evolution process foster virtual organizations of suppliers and manufacturers, combining their products and capabilities into an agile manufacturing information and control system.

  6. Integrated Biogeomorphological Modeling Using Delft3D

    NASA Astrophysics Data System (ADS)

    Ye, Q.; Jagers, B.

    2011-12-01

    The skill of numerical morphological models has improved significantly from the early 2D uniform, total load sediment models (with steady state or infrequent wave updates) to recent 3D hydrodynamic models with multiple suspended and bed load sediment fractions and bed stratigraphy (online coupled with waves). Although there remain many open questions within this combined field of hydro- and morphodynamics, we observe an increasing need to include biological processes in the overall dynamics. In riverine and inter-tidal environments, there is often an important influence by riparian vegetation and macrobenthos. Over the past decade more and more researchers have started to extend the simulation environment with wrapper scripts and other quick code hacks to estimate their influence on morphological development in coastal, estuarine and riverine environments. Although one can in this way quickly analyze different approaches, these research tools have generally not been designed with reuse, performance and portability in mind. We have now implemented a reusable, flexible, and efficient two-way link between the Delft3D open source framework for hydrodynamics, waves and morphology, and the water quality and ecology modules. The same link will be used for 1D, 2D and 3D modeling on networks and both structured and unstructured grids. We will describe the concepts of the overall system, and illustrate it with some first results.

  7. 28 CFR 524.76 - Appeals of CIM classification.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ..., CLASSIFICATION, AND TRANSFER CLASSIFICATION OF INMATES Central Inmate Monitoring (CIM) System § 524.76 Appeals of CIM classification. An inmate may at any time appeal (through the Administrative Remedy Program) the... 28 Judicial Administration 2 2010-07-01 2010-07-01 false Appeals of CIM classification....

  8. Comparison. US P-61 and Delft sediment samplers

    USGS Publications Warehouse

    Beverage, Joseph P.; Williams, David T.

    1990-01-01

    The Delft Bottle (DB) is a flow-through device designed by the Delft Hydraulic Laboratory (DHL), The Netherlands, to sample sand-sized sediment suspended in streams. The US P-61 sampler was designed by the Federal Interagency Sedimentation Project (FISP) at the St. Anthony Falls Hydraulic Laboratory, Minneapolis, Minnesota, to collect suspended sediment from deep, swift rivers. The results of two point-sampling tests in the United States, the Mississippi River near Vicksburg, Mississippi, in 1983 and the Colorado River near Blythe, California, in 1984, are provided in this report. These studies compare sand-transport rates, rather than total sediment-transport rates, because fine material washes through the DB sampler. In the United States, the commonly used limits for sand-sized material are 0.062 mm to 2.00 mm (Vanoni 1975).

  9. Analysis of quality costs - A critical element in CIM

    NASA Technical Reports Server (NTRS)

    Unal, Resit; Dean, Edwin B.

    1990-01-01

    Computer integrated manufacturing (CIM) is a cohesive database of manufacturing information, providing an opportunity to track quality costs and measure progress toward their reduction. This paper presents the quality cost concept as an approach to identify, measure and reduce quality costs while improving quality within CIM. The effect of advanced failure prevention methodologies, such as continuous process improvement and the quality engineering methods of Taguchi, on quality and cost, is discussed.

  10. Delft FEWS: An open shell flood forecasting platform

    NASA Astrophysics Data System (ADS)

    Reggiani, P.; Kwadijk, J. C. J.; Werner, M. G. F.; van Dijk, M. J.; Schellekens, J.; van Kappel, R. R.; Sprokkereef, E.

    2003-04-01

    DELFT FEWS is a flood forecasting system developed over several years at Delft Hydraulics. The main philosophy underlying the system is to provide an open shell tool, that allows integration of arbitrary hydrological and river routing models with meteorological data and numerical weather forecasts. In its actual form DELFT-FEWS constitutes a collection of platform-independent software modules, linked to a central database. The database is used to store historical runoff data from gauging stations, and meteorological data from local and synoptic meteorological stations. These can be updated on-line through direct access to national weather services, weather forecast centres and hydro-meteorological services. In addition, the platform is designed to import and convert numerical weather forecasts produced by weather agencies, and interface them with the database. The system incorporates a wide range of algorithms for data verification, interpolation, model updating and data assimilation. These can be employed for data verification and reconstruction of missing values, as well as for pre processing of meteorological data, such that are made ready for use in hydrological models. The various hydrological and routing models are included into the system via appropriate model adapters, that convert data in the database to specific model data formats and vice versa. In this manner a concatenation of various operational and already tested models into model cascades is facilitated within a single and consistent computational framework. To date the system has been successfully tested with various numerical weather forecasts, including deterministic and ensemble forecasts provided by national weather forecast centres and the European Centre for Medium-Range Weather Forecast. The hydrodynamic river routing module SOBEK, the LISFLOOD suite of raster-based hydrology and hydraulic codes and the well-known HBV hydrological model were included for the computation of the hydrologic

  11. Evaluation of the Sustainable Development Graduation Track at Delft University of Technology

    ERIC Educational Resources Information Center

    De Werk, G.; Kamp, L. M.

    2008-01-01

    This paper evaluates the sustainable development graduation track at TU Delft. This track can be followed by all students of TU Delft. It consists of an interdisciplinary colloquium "Technology in Sustainable Development", 300 h of self-chosen courses on sustainable development and a graduation project in which sustainable development is…

  12. Information engineering: Sandia's Computer Integrated Manufacturing (CIM) database

    SciTech Connect

    Sharp, J.K.

    1990-01-01

    The activities involved in establishing a Computer Integrated Manufacturing (CIM) database at Sandia National Laboratories (SNL) are part of a common effort to implement a proactive data administration function across administrative and technical databases. Data administration activities include the establishment of corporate data dictionary, a corporate information model, and a library of important objects and their relationships with other objects. Processes requiring information will be identified and supported with future information systems that share administrative and technical data. The process to create databases is being established based upon accepted engineering design practices. This paper discusses the CIM database, presents the selected information modeling technique and describes the information engineering process. 9 refs.

  13. 'Most rare workmen': optical practitioners in early seventeenth-century Delft.

    PubMed

    Zuidervaart, Huib J; Rijks, Marlise

    2015-03-01

    A special interest in optics among various seventeenth-century painters living in the Dutch city of Delft has intrigued historians, including art historians, for a long time. Equally, the impressive career of the Delft microscopist Antoni van Leeuwenhoek has been studied by many historians of science. However, it has never been investigated who, at that time, had access to the mathematical and optical knowledge necessary for the impressive achievements of these Delft practitioners. We have tried to gain insight into Delft as a 'node' of optical knowledge by following the careers of three minor local figures in early seventeenth-century Delft. We argue that through their work, products, discussions in the vernacular and exchange of skills, rather than via learned publications, these practitioners constituted a foundation on which the later scientific and artistic achievements of other Delft citizens were built. Our Delft case demonstrates that these practitioners were not simple and isolated craftsmen; rather they were crucial components in a network of scholars, savants, painters and rich virtuosi. Decades before Vermeer made his masterworks, or Van Leeuwenhoek started his famous microscopic investigations, the intellectual atmosphere and artisanal knowledge in this city centred on optical topics. PMID:25833798

  14. Implementing Continuous Improvement Management (CIM) in the Public Schools.

    ERIC Educational Resources Information Center

    Borgers, William E.; Thompson, Tommy A.

    This book traces the restructuring of a Texas school district that moved from management by coercion to continuous improvement for quality. In 1990, the Dickinson Independent School District (Texas) began implementation of Continuous Improvement Management (CIM), based on the teachings of W. Edwards Deming, William Glasser, and J. M. Juran.…

  15. Using Delft3D to Simulate Current Energy Conversion

    NASA Astrophysics Data System (ADS)

    James, S. C.; Chartrand, C.; Roberts, J.

    2015-12-01

    As public concern with renewable energy increases, current energy conversion (CEC) technology is being developed to optimize energy output and minimize environmental impact. CEC turbines generate energy from tidal and current systems and create wakes that interact with turbines located downstream of a device. The placement of devices can greatly influence power generation and structural reliability. CECs can also alter the ecosystem process surrounding the turbines, such as flow regimes, sediment dynamics, and water quality. Software is needed to investigate specific CEC sites to simulate power generation and hydrodynamic responses of a flow through a CEC turbine array. This work validates Delft3D against several flume experiments by simulating the power generation and hydrodynamic response of flow through a turbine or actuator disc(s). Model parameters are then calibrated against these data sets to reproduce momentum removal and wake recovery data with 3-D flow simulations. Simulated wake profiles and turbulence intensities compare favorably to the experimental data and demonstrate the utility and accuracy of a fast-running tool for future siting and analysis of CEC arrays in complex domains.

  16. Updated Delft Mass Transport model DMT-2: computation and validation

    NASA Astrophysics Data System (ADS)

    Hashemi Farahani, Hassan; Ditmar, Pavel; Inacio, Pedro; Klees, Roland; Guo, Jing; Guo, Xiang; Liu, Xianglin; Zhao, Qile; Didova, Olga; Ran, Jiangjun; Sun, Yu; Tangdamrongsub, Natthachet; Gunter, Brian; Riva, Ricardo; Steele-Dunne, Susan

    2014-05-01

    A number of research centers compute models of mass transport in the Earth's system using primarily K-Band Ranging (KBR) data from the Gravity Recovery And Climate Experiment (GRACE) satellite mission. These models typically consist of a time series of monthly solutions, each of which is defined in terms of a set of spherical harmonic coefficients up to degree 60-120. One of such models, the Delft Mass Transport, release 2 (DMT-2), is computed at the Delft University of Technology (The Netherlands) in collaboration with Wuhan University. An updated variant of this model has been produced recently. A unique feature of the computational scheme designed to compute DMT-2 is the preparation of an accurate stochastic description of data noise in the frequency domain using an Auto-Regressive Moving-Average (ARMA) model, which is derived for each particular month. The benefits of such an approach are a proper frequency-dependent data weighting in the data inversion and an accurate variance-covariance matrix of noise in the estimated spherical harmonic coefficients. Furthermore, the data prior to the inversion are subject to an advanced high-pass filtering, which makes use of a spatially-dependent weighting scheme, so that noise is primarily estimated on the basis of data collected over areas with minor mass transport signals (e.g., oceans). On the one hand, this procedure efficiently suppresses noise, which are caused by inaccuracies in satellite orbits and, on the other hand, preserves mass transport signals in the data. Finally, the unconstrained monthly solutions are filtered using a Wiener filter, which is based on estimates of the signal and noise variance-covariance matrices. In combination with a proper data weighting, this noticeably improves the spatial resolution of the monthly gravity models and the associated mass transport models.. For instance, the computed solutions allow long-term negative trends to be clearly seen in sufficiently small regions notorious

  17. Reactions and mass spectra of complex particles using Aerosol CIMS

    NASA Astrophysics Data System (ADS)

    Hearn, John D.; Smith, Geoffrey D.

    2006-12-01

    Aerosol chemical ionization mass spectrometry (CIMS) is used both on- and off-line for the analysis of complex laboratory-generated and ambient particles. One of the primary advantages of Aerosol CIMS is the low degree of ion fragmentation, making this technique well suited for investigating the reactivity of complex particles. To demonstrate the usefulness of this "soft" ionization, particles generated from meat cooking were reacted with ozone and the composition was monitored as a function of reaction time. Two distinct kinetic regimes were observed with most of the oleic acid in these particles reacting quickly but with 30% appearing to be trapped in the complex mixture. Additionally, detection limits are measured to be sufficiently low (100-200 ng/m3) to detect some of the more abundant constituents in ambient particles, including sulfate, which is measured in real-time at 1.2 [mu]g/m3. To better characterize complex aerosols from a variety of sources, a novel off-line collection method was also developed in which non-volatile and semi-volatile organics are desorbed from particles and concentrated in a cold U-tube. Desorption from the U-tube followed by analysis with Aerosol CIMS revealed significant amounts of nicotine in cigarette smoke and levoglucosan in oak and pine smoke, suggesting that this may be a useful technique for monitoring particle tracer species. Additionally, secondary organic aerosol formed from the reaction of ozone with R-limonene and volatile organics from orange peel were analyzed off-line showing large molecular weight products (m/z > 300 amu) that may indicate the formation of oligomers. Finally, mass spectra of ambient aerosol collected offline reveal a complex mixture of what appears to be highly processed organics, some of which may contain nitrogen.

  18. Predicting longshore gradients in longshore transport: the CERC formula compared to Delft3D

    USGS Publications Warehouse

    List, Jeffrey H.; Hanes, Daniel M.; Ruggiero, Peter

    2007-01-01

    The prediction of longshore transport gradients is critical for forecasting shoreline change. We employ simple test cases consisting of shoreface pits at varying distances from the shoreline to compare the longshore transport gradients predicted by the CERC formula against results derived from the process-based model Delft3D. Results show that while in some cases the two approaches give very similar results, in many cases the results diverge greatly. Although neither approach is validated with field data here, the Delft3D-based transport gradients provide much more consistent predictions of erosional and accretionary zones as the pit location varies across the shoreface.

  19. Engineering Curricula in Sustainable Development. An Evaluation of Changes at Delft University of Technology

    ERIC Educational Resources Information Center

    Mulder, Karel F.

    2006-01-01

    This paper will first sketch some basic features of the engineering profession, and the need for change. It will analyse the political process that resulted in the decision at Delft University of Technology (DUT) to emphasise Sustainable Development (SD) in its curricula. The main goal of this education is to show that SD is not a burden, but a…

  20. Teaching Sustainable Entrepreneurship to Engineering Students: The Case of Delft University of Technology

    ERIC Educational Resources Information Center

    Bonnet, Hans; Quist, Jaco; Hoogwater, Daan; Spaans, Johan; Wehrmann, Caroline

    2006-01-01

    Sustainability, enhancement of personal skills, social aspects of technology, management and entrepreneurship are of increasing concern for engineers and therefore for engineering education. In 1996 at Delft University of Technology this led to the introduction of a subject on sustainable entrepreneurship and technology in the course programmes of…

  1. Study on the integration approaches to CAD/CAPP/FMS in garment CIMS

    NASA Astrophysics Data System (ADS)

    Wang, Xiankui; Tian, Wensheng; Liu, Chengying; Li, Zhizhong

    1995-08-01

    Computer integrated manufacturing system (CIMS), as an advanced methodology, has been applied in many industry fields. There is, however, little research on the application of CIMS in the garment industry, especially on the integrated approach to CAD, CAPP, and FMS in garment CIMS. In this paper, the current situations of CAD, CAPP, and FMS in the garment industry are discussed, and information requirements between them as well as the integrated approaches are also investigated. The representation of the garments' product data by the group technology coding is proposed. Based on the group technology, a shared data base as an integration element can be constructed, which leads to the integration of CAD/CAPP/FMS in garment CIMS.

  2. Delft3D-FLOW on PRACE infrastructures for real life hydrodynamic applications.

    NASA Astrophysics Data System (ADS)

    Donners, John; Genseberger, Menno; Jagers, Bert; de Goede, Erik; Mourits, Adri

    2013-04-01

    PRACE, the Partnership for Advanced Computing in Europe, offers access to the largest high-performance computing systems in Europe. PRACE invites and helps industry to increase their innovative potential through the use of the PRACE infrastructure. This poster describes different efforts to assist Deltares with porting the open-source simulation software Delft3D-FLOW to PRACE infrastructures. Analysis of the performance on these infrastructures has been done for real life flow applications. Delft3D-FLOW is a 2D and 3D shallow water solver which calculates non-steady flow and transport phenomena resulting from tidal and meteorological forcing on a curvilinear, boundary fitted grid in Cartesian or spherical coordinates. It also includes a module which sediment transport (both suspended and bed total load) and morphological changes for an arbitrary number of cohesive and non-cohesive fractions. As Delft3D-FLOW has been developed over several decades, with a variety of functionality and over 350k lines of source code, porting to PRACE infrastructures needs some effort. At the moment Delft3D-FLOW uses MPI with domain decomposition in one direction as its parallellisation approach. Because it is hard to identify scaling issues if one immediately starts with a complex case with many features enabled, different cases with increasing complexity have been used to investigate scaling of this parallellisation approach on several PRACE platforms. As a base reference case we started with a schematic high-resolution 2D hydrodynamic model of the river Waal that turned out to be surprisingly well-suited to the highly-parallel PRACE machines. Although Delft3D-FLOW employs a sophisticated build system, several modifications were required to port it to most PRACE systems due to the use of specific, highly-tuned compilers and MPI-libraries. After this we moved to a 3D hydrodynamic model of Rotterdam harbour that includes sections of the rivers Rhine and Meuse and a part of the North

  3. Characterization of the mass dependent transmission efficiency of a CIMS

    NASA Astrophysics Data System (ADS)

    Heinritzi, M.; Simon, M.; Steiner, G.; Wagner, A. C.; Kürten, A.; Hansel, A.; Curtius, J.

    2015-11-01

    Knowledge about mass discrimination effects in a Chemical Ionization Mass Spectrometer (CIMS) is crucial for quantifying e.g. the recently discovered Extremely Low Volatile Organic Compounds (ELVOCs) and other compounds for which no calibration standard exists so far. Here, we present a simple way of estimating mass discrimination effects of a nitrate based Chemical Ionization Atmospheric Pressure interface Time of Flight (CI-APi-TOF) mass spectrometer. Characterization of the mass discrimination is achieved by adding different perfluorinated acids to the mass spectrometer in amounts sufficient to deplete the primary ions significantly. The relative transmission efficiency can then be determined by comparing the decrease of signals from the primary ions and the increase of signals from the perfluorinated acids at higher masses. This method is in use already for PTR-MS, however its application to a CI-APi-TOF brings additional difficulties, namely clustering and fragmentation of the measured compounds, which can be treated with statistical analysis of the measured data, leading to self-consistent results. We also compare this method to a transmission estimation obtained with a setup using an Electrospray Ion source, a High Resolution Differential Mobility Analyzer and an electrometer, which estimates the transmission of the instrument without the CI source. Both methods give different transmission curves, indicating non-negligible mass discrimination effects of the CI source. The absolute transmission of the instrument without the CI source was estimated with the HR-DMA method to plateau between the m / z range of 127 and 568 Th at around 1.5 %, however for the CI source included, the depletion method showed a steady increase in relative transmission efficiency from the m / z range of the primary ion (mainly at 62 Th) to around 550 Th by a factor of around 5. The main advantages of the depletion method are that the instrument is used in the same operation mode as

  4. The Effect of Nutritional Status in the Pathogenesis of Critical Illness Myopathy (CIM)

    PubMed Central

    Ogilvie, Hannah; Larsson, Lars

    2014-01-01

    The muscle wasting and loss of specific force associated with Critical Illness Myopathy (CIM) is, at least in part, due to a preferential loss of the molecular motor protein myosin. This acquired myopathy is common in critically ill immobilized and mechanically ventilated intensive care patients (ICU). There is a growing understanding of the mechanisms underlying CIM, but the role of nutritional factors triggering this serious complication of modern intensive care remains unknown. This study aims at establishing the effect of nutritional status in the pathogenesis of CIM. An experimental ICU model was used where animals are mechanically ventilated, pharmacologically paralysed post-synaptically and extensively monitored for up to 14 days. Due to the complexity of the experimental model, the number of animals included is small. After exposure to this ICU condition, animals develop a phenotype similar to patients with CIM. The results from this study show that the preferential myosin loss, decline in specific force and muscle fiber atrophy did not differ between low vs. eucaloric animals. In both experimental groups, passive mechanical loading had a sparing effect of muscle weight independent on nutritional status. Thus, this study confirms the strong impact of the mechanical silencing associated with the ICU condition in triggering CIM, overriding any potential effects of caloric intake in triggering CIM. In addition, the positive effects of passive mechanical loading on muscle fiber size and force generating capacity was not affected by the nutritional status in this study. However, due to the small sample size these pilot results need to be validated in a larger cohort. PMID:24887774

  5. [R]MIT Research Centre at Delft University of Technology: A Bridge between Research, Education, Society and Profession

    ERIC Educational Resources Information Center

    Zijlstra, Hielkje

    2009-01-01

    In 2006, we launched the [R]MIT Research Centre (Modification, Intervention Transformation) at the Faculty of Architecture at Delft University of Technology. [R]MIT was founded to respond to the need for an integrated, multi-disciplinary approach to the transformation of the built environment. [R]MIT aims to bring momentum to the renewal of…

  6. CIM's bridge from CADD to CAM: Data management requirements for manufacturing engineering

    NASA Technical Reports Server (NTRS)

    Ford, S. J.

    1984-01-01

    Manufacturing engineering represents the crossroads of technical data management in a Computer Integrated Manufacturing (CIM) environment. Process planning, numerical control programming and tool design are the key functions which translate information from as engineered to as assembled. In order to transition data from engineering to manufacturing, it is necessary to introduce a series of product interpretations which contain an interim introduction of technical parameters. The current automation of the product definition and the production process places manufacturing engineering in the center of CAD/CAM with the responsibility of communicating design data to the factory floor via a manufacturing model of the data. A close look at data management requirements for manufacturing engineering is necessary in order to establish the overall specifications for CADD output, CAM input, and CIM integration. The functions and issues associated with the orderly evolution of computer aided engineering and manufacturing are examined.

  7. Rice Seed Priming with Picomolar Rutin Enhances Rhizospheric Bacillus subtilis CIM Colonization and Plant Growth

    PubMed Central

    Singh, Akanksha; Gupta, Rupali; Pandey, Rakesh

    2016-01-01

    The effect of rutin, a bioflavonoid on the growth and biofilm formation of Bacillus subtilis strain CIM was investigated. In addition to swimming, swarming, and twitching potentials of B. subtilis CIM (BS), one picomolar (1 pM) of rutin was also observed to boost the biofilm forming ability of the bacterium. Bio-priming of rice seeds with BS and rutin not only augmented root and shoot lengths but also the photosynthetic pigments like chlorophyll and carotenoid. Similarly, high accumulation of phenolic and flavonoid contents was observed in the leaves. Fluorescent microscopic images revealed that BS plus rutin enhanced callose deposition in the leaves. It was also established that the least formation of reactive oxygen species in BS plus rutin treated rice plants was due to higher free radicals scavenging activity and total antioxidant potential. The results highlight chemo attractant nature of BS towards rutin, which by enhancing biofilm formation and root colonization indirectly strengthened the plants’ defensive state. PMID:26742102

  8. Novel metastasis-related gene CIM functions in the regulation of multiple cellular stress-response pathways.

    PubMed

    Yanagisawa, Kiyoshi; Konishi, Hiroyuki; Arima, Chinatsu; Tomida, Shuta; Takeuchi, Toshiyuki; Shimada, Yukako; Yatabe, Yasushi; Mitsudomi, Tetsuya; Osada, Hirotaka; Takahashi, Takashi

    2010-12-01

    Various stresses of the tumor microenvironment produced by insufficient nutrients, pH, and oxygen can contribute to the generation of altered metabolic and proliferative states that promote the survival of metastatic cells. Among many cellular stress-response pathways activated under such conditions are the hypoxia-inducible factor (HIF) pathway and the unfolded protein response (UPR), which is elicited as a response to endoplasmic reticulum (ER) stress. In this study, we report the identification of a novel cancer invasion and metastasis-related gene (hereafter referred to as CIM, also called ERLEC1), which influences both of these stress-response pathways to promote metastasis. CIM was identified by comparing the gene expression profile of a highly metastatic human lung cancer cell line with its weakly metastatic parental clone. We showed that CIM is critical for metastatic properties in this system. Proteomic approaches combined with bioinformatic analyses revealed that CIM has multifaceted roles in controlling the response to hypoxia and ER stress. Specifically, CIM sequestered OS-9 from the HIF-1α complex and PHD2, permitting HIF-1α accumulation by preventing its degradation. Ectopic expression of CIM in lung cancer cells increased their tolerance to hypoxia. CIM also modulated UPR through interaction with the key ER stress protein BiP, influencing cell proliferation under ER stress conditions. Our findings shed light on how tolerance to multiple cellular stresses at a metastatic site can be evoked by an integrated mechanism involving CIM, which can function to coordinate those responses in a manner that promotes metastatic cell survival. PMID:21118962

  9. The lightweight Delft Cylinder Hand: first multi-articulating hand that meets the basic user requirements.

    PubMed

    Smit, Gerwin; Plettenburg, Dick H; van der Helm, Frans C T

    2015-05-01

    Rejection rates of upper limb prostheses are high (23%-45%). Amputees indicate that the highest design priority should be reduction of the mass of the prosthetic device. Despite all efforts, the mass of the new prosthetic hands is 35%-73% higher than that of older hands. Furthermore, current hands are thicker than a human hand, they operate slower and do not provide proprioceptive force and position feedback. This study presents the Delft Cylinder Hand, a body powered prosthetic hand which mass is 55%-68% lower than that of the lightest current prosthetic hands, operates faster, has an anthropomorphic shape, and provides proprioceptive force and position feedback. The hand has articulating fingers, actuated by miniature hydraulic cylinders. The articulating fingers adapt to the shape of the grasped object. Its functional scores are similar to that of current prosthetic devices. The hand has a higher mechanical performance than current body-powered hands. It requires 49%-162% less energy from the user and it can deliver a higher maximum pinch force (30-60 N). PMID:25122837

  10. Johannes Vermeer of Delft [1632-1675] and vision in neuroendoscopy

    PubMed Central

    Azab, Waleed A.; Prevedello, Daniel M.; Carrau, Ricardo L.

    2014-01-01

    Background: Johannes Vermeer of Delft [1632-1675] was one of the greatest Masters of the Dutch Golden Age who was intensely preoccupied with the behavior of light and other optical effects and was entitled “The Master of Light”. He fastidiously attended to the subtleties of visual expression through geometry, composition, and precise mastery of the rules of perspective. It has been our impression that some visual similarity does exist between neuroendoscopic images and some of Vermeer's paintings. Such a relation could be explained by the fact that optical devices are utilized in producing both types of display. Methods: We reviewed the pertinent medical and art literature, observed some video clips of our endoscopy cases, and inspected digital high resolution images of Vermeer's paintings in order to elaborate on shared optical phenomena between neuroendoscopic views and Vermeer's paintings. Results: Specific optical phenomena are indeed shared by Johannes Vermeer's works and neuroendoscopic vision, namely light and color effects as well as the rules of perspective. Conclusion: From the physical point of view, the possibility that a camera obscura inspired Vermeer's artistic creation makes the existence of a visual link between his paintings and the endoscopic views of the intracranial cavity comprehensible. PMID:25140282

  11. Filtration Characterization Method as Tool to Assess Membrane Bioreactor Sludge Filterability—The Delft Experience

    PubMed Central

    Lousada-Ferreira, Maria; Krzeminski, Pawel; Geilvoet, Stefan; Moreau, Adrien; Gil, Jose A.; Evenblij, Herman; van Lier, Jules B.; van der Graaf, Jaap H. J. M.

    2014-01-01

    Prevention and removal of fouling is often the most energy intensive process in Membrane Bioreactors (MBRs), responsible for 40% to 50% of the total specific energy consumed in submerged MBRs. In the past decade, methods were developed to quantify and qualify fouling, aiming to support optimization in MBR operation. Therefore, there is a need for an evaluation of the lessons learned and how to proceed. In this article, five different methods for measuring MBR activated sludge filterability and critical flux are described, commented and evaluated. Both parameters characterize the fouling potential in full-scale MBRs. The article focuses on the Delft Filtration Characterization method (DFCm) as a convenient tool to characterize sludge properties, namely on data processing, accuracy, reproducibility, reliability, and applicability, defining the boundaries of the DFCm. Significant progress was made concerning fouling measurements in particular by using straight forward approaches focusing on the applicability of the obtained results. Nevertheless, a fouling measurement method is still to be defined which is capable of being unequivocal, concerning the fouling parameters definitions; practical and simple, in terms of set-up and operation; broad and useful, in terms of obtained results. A step forward would be the standardization of the aforementioned method to assess the sludge filtration quality. PMID:24957174

  12. Filtration characterization method as tool to assess membrane bioreactor sludge filterability-the delft experience.

    PubMed

    Lousada-Ferreira, Maria; Krzeminski, Pawel; Geilvoet, Stefan; Moreau, Adrien; Gil, Jose A; Evenblij, Herman; van Lier, Jules B; van der Graaf, Jaap H J M

    2014-01-01

    Prevention and removal of fouling is often the most energy intensive process in Membrane Bioreactors (MBRs), responsible for 40% to 50% of the total specific energy consumed in submerged MBRs. In the past decade, methods were developed to quantify and qualify fouling, aiming to support optimization in MBR operation. Therefore, there is a need for an evaluation of the lessons learned and how to proceed. In this article, five different methods for measuring MBR activated sludge filterability and critical flux are described, commented and evaluated. Both parameters characterize the fouling potential in full-scale MBRs. The article focuses on the Delft Filtration Characterization method (DFCm) as a convenient tool to characterize sludge properties, namely on data processing, accuracy, reproducibility, reliability, and applicability, defining the boundaries of the DFCm. Significant progress was made concerning fouling measurements in particular by using straight forward approaches focusing on the applicability of the obtained results. Nevertheless, a fouling measurement method is still to be defined which is capable of being unequivocal, concerning the fouling parameters definitions; practical and simple, in terms of set-up and operation; broad and useful, in terms of obtained results. A step forward would be the standardization of the aforementioned method to assess the sludge filtration quality. PMID:24957174

  13. Further development around the Hoger Onderwijs reactor of IRI in Delft

    SciTech Connect

    Bruin, M. de )

    1992-01-01

    The Interfacultair Reactor Instituut (IRI) was founded in 1958, and its reactor first reached criticality in 1963. Until 1987, IRI was an interuniversity institute, owned and directed by the combined universities. Since then it constitutes part of the Delft University of Technology but continues its role as an interuniversity institute. The main facility is the Hoger Onderwijsreactor (HOR), a 2-MW swimming-pool reactor operated 24 h/day, 5 day/week. In the 5-yr working plan of 1988-1993, much attention is being paid to development and construction of new experimental facilities connected to the reactor. A double-stacked mirror neutron guide, a reactor coupled source of variable energy positrons, and an irradiation facility for activation analysis of large samples have been installed. Completion of a neutron reflectometer suitable for application to solids as well as liquids is foreseen for 1993. Further plans for facility development will focus on the construction of a small beam hall and a three- or fourfold stacked mirror neutron guide to provide neutron beams to that hall. The IRI research program will be continued along the lines discussed on earlier occasions but with increasing emphasis on research using neutron beams and positron techniques and nuclear technology. Major new research activities are focused on plant uptake of long-lived fission products and on the behavior of natural nuclides in large-scale industrial processes.

  14. Graphical interface between the CIRSSE testbed and CimStation software with MCS/CTOS

    NASA Technical Reports Server (NTRS)

    Hron, Anna B.

    1992-01-01

    This research is concerned with developing a graphical simulation of the testbed at the Center for Intelligent Robotic Systems for Space Exploration (CIRSSE) and the interface which allows for communication between the two. Such an interface is useful in telerobotic operations, and as a functional interaction tool for testbed users. Creating a simulated model of a real world system, generates inevitable calibration discrepancies between them. This thesis gives a brief overview of the work done to date in the area of workcell representation and communication, describes the development of the CIRSSE interface, and gives a direction for future work in the area of system calibration. The CimStation software used for development of this interface, is a highly versatile robotic workcell simulation package which has been programmed for this application with a scale graphical model of the testbed, and supporting interface menu code. A need for this tool has been identified for the reasons of path previewing, as a window on teleoperation and for calibration of simulated vs. real world models. The interface allows information (i.e., joint angles) generated by CimStation to be sent as motion goal positions to the testbed robots. An option of the interface has been established such that joint angle information generated by supporting testbed algorithms (i.e., TG, collision avoidance) can be piped through CimStation as a visual preview of the path.

  15. Application of Lithium Attachment Mass Spectrometry for Knudsen Evaporation and Chemical Ionisation Mass Spectrometry (KEMS, CIMS)

    NASA Astrophysics Data System (ADS)

    Bannan, T.; Booth, M.; Benyezzar, M.; Bacak, A.; Alfarra, M. R. R.; Topping, D. O.; Percival, C.

    2015-12-01

    Lithium ion attachment mass spectrometry provides a non-specific, non-fragmenting and sensitive method for detection of volatile species in the gas phase. The design, manufacture, and results from lithium ion attachment ionisation sources for two mass spectrometry systems are presented. Trace gas analysis is investigated using a modified Chemical Ionization Mass Spectrometer (CIMS) and vapour pressure (VP) measurements using a modified Knudsen Effusion Mass Spectrometer (KEMS) are presented. The Li+ modified CIMS provided limits of detection of 4 ppt for acetone, 0.2 ppt for formic acid, 15 ppt for nitric acid and 120 ppt from ammonia. Despite improvements, the problem of burnout remained persistent. The Li+ CIMS would unlikely be suitable for field or aircraft work, but could be appropriate for certain lab applications. The KEMS currently utilizes an electron impact (EI) ionisation source which provides a highly sensitive source, with the drawback of fragmentation of ionized molecules (Booth et al., 2009). Using Li+ KEMS the VP of samples can be measured without fragmentation and can therefore be used to identify VPs of individual components in mixtures. The validity of using Li+ for determining the VP of mixtures was tested by making single component VP measurements, which showed good agreement with EI measurements of Poly ethylene glycol (PEG) 3 and PEG 4, both when individually measured and when mixed. The Li+ KEMS was then used to investigate a system of atmospheric relevance, α-pinene secondary organic aerosol, generated in a reaction chamber (Alfarra et al., 2012). The VPs of the individual components from this generated sample are within the range we expect for compounds capable of partitioning between the particle and gas phase of an aerosol (0.1-10-5 Pa). Li+ source has a calculated sensitivity approximately 75 times less than that of EI, but the lack of fragmentation using the Li+ source is a significant advantage.

  16. Application of Lithium Attachment Mass Spectrometry for Knudsen Evaporation and Chemical Ionisation Mass Spectrometry (KEMS, CIMS)

    NASA Astrophysics Data System (ADS)

    Bannan, Thomas; Booth, A. Murray; Alfarra, Rami; Bacak, Asan; Pericval, Carl

    2016-04-01

    Lithium ion attachment mass spectrometry provides a non-specific, non-fragmenting and sensitive method for detection of volatile species in the gas phase. The design, manufacture, and results from lithium ion attachment ionisation sources for two mass spectrometry systems are presented. Trace gas analysis is investigated using a modified Chemical Ionization Mass Spectrometer (CIMS) and vapour pressure (VP) measurements using a modified Knudsen Effusion Mass Spectrometer (KEMS) are presented. The Li+ modified CIMS provided limits of detection of 4 ppt for acetone, 0.2 ppt for formic acid, 15 ppt for nitric acid and 120 ppt from ammonia. Despite improvements, the problem of burnout remained persistent. The Li+ CIMS would unlikely be suitable for field or aircraft work, but could be appropriate for certain lab applications. The KEMS currently utilizes an electron impact (EI) ionisation source which provides a highly sensitive source, with the drawback of fragmentation of ionized molecules (Booth et al., 2009). Using Li+ KEMS the VP of samples can be measured without fragmentation and can therefore be used to identify VPs of individual components in mixtures. The validity of using Li+ for determining the VP of mixtures was tested by making single component VP measurements, which showed good agreement with EI measurements of Poly ethylene glycol (PEG) 3 and PEG 4, both when individually measured and when mixed. The Li+ KEMS was then used to investigate a system of atmospheric relevance, α-pinene secondary organic aerosol, generated in a reaction chamber (Alfarra et al., 2012). The VPs of the individual components from this generated sample are within the range we expect for compounds capable of partitioning between the particle and gas phase of an aerosol (0.1-10-5 Pa). Li+ source has a calculated sensitivity approximately 75 times less than that of EI, but the lack of fragmentation using the Li+ source is a significant advantage.

  17. Comprehensive Instructional Management System (CIMS) Mathematics Project 1985-1986 End of Year Report. OEA Evaluation Report.

    ERIC Educational Resources Information Center

    New York City Board of Education, Brooklyn. Office of Educational Assessment.

    This report describes the Comprehensive Instructional Management System (CIMS), which includes a teacher-developed mathematics curriculum for kindergarten through grade seven, corresponding criterion-referenced tests, and a computerized test scoring and reporting management system. The evaluation focused on the five pilot districts in New York…

  18. On Ground Surface Extraction Using Full-Waveform Airborne Laser Scanner for Cim

    NASA Astrophysics Data System (ADS)

    Nakano, K.; Chikatsu, H.

    2015-05-01

    Satellite positioning systems such as GPS and GLONASS have created significant changes not only in terms of spatial information but also in the construction industry. It is possible to execute a suitable construction plan by using a computerized intelligent construction. Therefore, an accurate estimate of the amount of earthwork is important for operating heavy equipment, and measurement of ground surface with high accuracy is required. A full-waveform airborne laser scanner is expected to be capable of improving the accuracy of ground surface extraction for forested areas, in contrast to discrete airborne laser scanners, as technological innovation. For forested areas, fundamental studies for construction information management (CIM) were conducted to extract ground surface using full-waveform airborne laser scanners based on waveform information.

  19. Direct Measurement of Atmospheric Ammonia from an Airborne Miniature Chemical Ionization Mass Spectrometer (miniCIMS)

    NASA Astrophysics Data System (ADS)

    Casados, K.; Schill, S.; Freeman, S.; Zoerb, M.; Bertram, T. H.; Lefer, B. L.

    2015-12-01

    Ammonia is emitted into the atmosphere from a variety of sources such as trees, ocean, diary fields, biomass burning, and fuel emissions. Previous studies have investigated the environmental impacts of atmospheric ammonia which can include chemical reactivity, nucleation of fine particulate matter 2.5 (PM 2.5 ), and implications for human health, but its chemical nature and relatively short lifetime make direct measurement of atmospheric ammonia difficult. During the 2015 NASA Student Airborne Research Program (SARP) an airborne miniature Chemical Ionization Mass Spectrometer (miniCIMS) was deployed on the NASA DC-8 flying laboratory in the Southern California region. The spatial and temporal variability of measured atmospheric ammonia concentrations will be discussed.

  20. CIM-EARTH: Community integrated model of economic and resource trajectories for humankind.

    SciTech Connect

    Elliott, J.; Foster, I.; Judd, K.; Moyer, E.; Munson, T.; Univ. of Chicago; Hoover Inst.

    2010-01-01

    Climate change is a global problem with local climatic and economic impacts. Mitigation policies can be applied on large geographic scales, such as a carbon cap-and-trade program for the entire U.S., on medium geographic scales, such as the NOx program for the northeastern U.S., or on smaller scales, such as statewide renewable portfolio standards and local gasoline taxes. To enable study of the environmental benefits, transition costs, capitalization effects, and other consequences of mitigation policies, we are developing dynamic general equilibrium models capable of incorporating important climate impacts. This report describes the economic framework we have developed and the current Community Integrated Model of Economic and Resource Trajectories for Humankind (CIM-EARTH) instance.

  1. CIM5 bubbler: Effect of sparge rate and duration on homogeneity to Am/Cm glass

    SciTech Connect

    Stone, M. E.

    2000-01-20

    The current flowsheet for the Am/Cm program requires that the glass pool be sparged with argon during the soaking period immediately prior to draining the melter. The effect of varying sparge rate and duration on the homogeneity of the final glass product was evaluated using the full scale 5-inch Cylindrical Induction Melter (CIM5) pilot facility. The tests showed that the homogeneity of the glass product is maintained provided the sparge rate is at least 1.5 scfh and the sparge duration is at least 45 minutes or the flowrate is at least 1.0 scfh and the sparge duration is 60 minutes. SRTC recommends that the melt pool be sparged for 75 minutes with an argon flowrate of 1.5 scfh and a sparge dip tube located 1-inch from the melter bottom. In addition, pour flowrate was found to be a reliable indication of glass homogeneity.

  2. CIM-EARTH: Community Integrated Model of Economic and Resource Trajectories for Humankind

    NASA Astrophysics Data System (ADS)

    Foster, I.; Elliott, J.; Munson, T.; Judd, K.; Moyer, E. J.; Sanstad, A. H.

    2010-12-01

    We report here on the development of an open source software framework termed CIM-EARTH that is intended to aid decision-making in climate and energy policy. Numerical modeling in support of evaluating policies to address climate change is difficult not only because of inherent uncertainties but because of the differences in scale and modeling approach required for various subcomponents of the system. Economic and climate models are structured quite differently, and while climate forcing can be assumed to be roughly global, climate impacts and the human response to them occur on small spatial scales. Mitigation policies likewise can be applied on scales ranging from the better part of a continent (e.g. a carbon cap-and-trade program for the entire U.S.) to a few hundred km (e.g. statewide renewable portfolio standards and local gasoline taxes). Both spatial and time resolution requirements can be challenging for global economic models. CIM-EARTH is a modular framework based around dynamic general equilibrium models. It is designed as a community tool that will enable study of the environmental benefits, transition costs, capitalization effects, and other consequences of both mitigation policies and unchecked climate change. Modularity enables both integration of highly resolved component sub-models for energy and other key systems and also user-directed choice of tradeoffs between e.g. spatial, sectoral, and time resolution. This poster describes the framework architecture, the current realized version, and plans for future releases. As with other open-source models familiar to the climate community (e.g. CCSM), deliverables will be made publicly available on a regular schedule, and community input is solicited for development of new features and modules.

  3. Elimination of Chromosomal Island SpyCIM1 from Streptococcus pyogenes Strain SF370 Reverses the Mutator Phenotype and Alters Global Transcription

    PubMed Central

    Nguyen, Scott V.; Rahman, Maliha; McCullor, Kimberly A.; King, Catherine J.; Fischetti, Vincent A.; McShan, W. Michael

    2015-01-01

    Streptococcus pyogenes chromosomal island M1 (SpyCIM1) integrates by site-specific recombination into the 5’ end of DNA mismatch repair (MMR) gene mutL in strain SF370SmR, blocking transcription of it and the downstream operon genes. During exponential growth, SpyCIM1 excises from the chromosome and replicates as an episome, restoring mutL transcription. This process is reversed in stationary phase with SpyCIM1 re-integrating into mutL, returning the cells to a mutator phenotype. Here we show that elimination of SpyCIM1 relieves this mutator phenotype. The downstream MMR operon genes, multidrug efflux pump lmrP, Holliday junction resolution helicase ruvA, and DNA base excision repair glycosylase tag, are also restored to constitutive expression by elimination of SpyCIM1. The presence of SpyCIM1 alters global transcription patterns in SF370SmR. RNA sequencing (RNA-Seq) demonstrated that loss of SpyCIM1 in the SpyCIM1 deletion mutant, CEM1Δ4, impacted the expression of over 100 genes involved in virulence and metabolism both in early exponential phase, when the SpyCIM1 is episomal, as well as at the onset of stationary phase, when SpyCIM1 has reintegrated into mutL. Among these changes, the up-regulation of the genes for the antiphagocytic M protein (emm1), streptolysin O (slo), capsule operon (hasABC), and streptococcal pyrogenic exotoxin (speB), are particularly notable. The expression pattern of the MMR operon confirmed our earlier observations that these genes are transcribed in early exponential phase but silenced as stationary phase is approached. Thus, the direct role of SpyCIM1 in causing the mutator phenotype is confirmed, and further, its influence upon the biology of S. pyogenes was found to impact multiple genes in addition to the MMR operon, which is a novel function for a mobile genetic element. We suggest that such chromosomal islands are a remarkable evolutionary adaptation to promote the survival of its S. pyogenes host cell in changing

  4. Secondary organic material formed by methylglyoxal in aqueous aerosol mimics - Part 2: Product identification using Aerosol-CIMS

    NASA Astrophysics Data System (ADS)

    Sareen, N.; Shapiro, E. L.; Schwier, A. N.; McNeill, V. F.

    2009-07-01

    We used chemical ionization mass spectrometry with a volatilization flow tube inlet (Aerosol-CIMS) to characterize secondary organic material formed by methylglyoxal with ammonium sulfate in aqueous aerosol mimics. Bulk reaction mixtures were diluted and atomized to form submicron aerosol particles. Organics were detected using Aerosol-CIMS in positive and negative ion mode using I- and H3O+·(H2O)n as reagent ions. The results are consistent with aldol condensation products, carbon-nitrogen species, sulfur-containing compounds, and oligomeric species up to 759 amu. These results support previous observations by us and others that ammonium sulfate plays a critical role in the SOA formation chemistry of dicarbonyl compounds.

  5. Decreased choline and creatine concentrations in centrum semiovale in patients with generalized anxiety disorder: relationship to IQ and early trauma.

    PubMed

    Coplan, Jeremy D; Mathew, Sanjay J; Mao, Xiangling; Smith, Eric L P; Hof, Patrick R; Coplan, Paul M; Rosenblum, Leonard A; Gorman, Jack M; Shungu, Dikoma C

    2006-06-30

    We have demonstrated, using proton magnetic resonance spectroscopy imaging ((1)H-MRSI), elevations of N-acetyl-aspartate/creatine (NAA/CR) in right dorsolateral prefrontal cortex (DLPFC) in patients with generalized anxiety disorder (GAD) in comparison to healthy volunteers. A recent study indicates that the volume of prefrontal cortical white matter may be disproportionately increased in man in comparison to other primate species, with evolutionary implications. We therefore re-analyzed the identical scans with a specific focus on the centrum semiovale (CSO) as a representative region of interest of cerebral white matter. The central hypothesis was, in accordance with our gray matter findings, that patients with GAD, in comparison to healthy controls, would exhibit either an increase in NAA in CSO, or alternatively demonstrate reductions in concentrations of choline (CHO)-containing compounds and/or creatine+phosphocreatine (CR). MRSI scans that were obtained from an earlier [Mathew, S.J., Mao, X., Coplan, J.D., Smith, E.L., Sackeim, H.A., Gorman, J.M., Shungu, D.C., 2004. Dorsolateral prefrontal cortical pathology in generalized anxiety disorder: a proton magnetic resonance spectroscopic imaging study. American Journal of Psychiatry 161, 1119-1121] sample of 15 patients with GAD [6 with early trauma (ET)] and 15 healthy age- and sex-matched volunteers were analyzed further for CSO metabolite alterations. Self-reported worry was scored using the Penn State Worry Questionnaire (PSWQ) and intelligence was assessed using the Wechsler Abbreviated Scale of Intelligence (WASI). Serial multislice/multivoxel MRSI scans had been performed on a 1.5-T MRI. Using absolute quantification methods for metabolite concentrations, we examined NAA, CHO and CR. GAD patients without ET exhibited bilaterally decreased concentrations of CHO and CR in CSO in comparison to healthy volunteers, whereas GAD patients with ET were indistinguishable from controls. In patients with GAD, high IQ

  6. Am/Cm TTR testing -- 3/8-inch glass beads evaluation in CIM5[Technical Task Request

    SciTech Connect

    Witt, D. C.

    2000-01-20

    To facilitate the procurement and handling of the glass former for Am/Cm vitrification in the F-Canyon MPPF, 1/4 inch and 3/8 inch diameter glass beads were purchased from Corning for evaluation in the 5 inch Cylindrical Induction Melter (CIM5). Prior to evaluating the beads in the CIM5, tests were conducted in the Drain Tube Test Stand (DTTS) with 1/4 inch beads, 3/8 inch beads, and a 50/50 mixture to identify any process concerns. Results of the DTTS tests are summarized in Attachment 1. A somewhat larger volume expansion was experienced in all three DTTS runs as compared to a standard run using cullet. Further testing of the use of glass beads in the CIM5 was requested by the Design Authority as Task 1.02 of Technical Task Request 99-MNSS/SE-006. Since the Technical Task Plan was not yet approved, the completion of this task was conducted under an authorization request approved by the SRTC Laboratory Director, S. Wood. This request is included as Attachment 2.

  7. Direct CIMS for the determination of mixtures of fatty alcohols from octanol to octadecanol

    NASA Astrophysics Data System (ADS)

    Ligon, Axel Patrick; Gäb, Siegmar

    2005-07-01

    The possibility of using direct chemical-ionization mass spectrometry to determine fatty alcohols in technical mixtures was examined. CH4, i-C4H10, H2S, NH3 and (CH3)3-nNHn were examined as reactant gases. Methane, because its proton affinity is significantly lower than those of the alcohols, and isobutane lead to an overlapping pattern of fragment ions, which prevents evaluation of the spectra. H2S does not form such interfering fragment ions; it forms only the quasi-molecular ions [M - 17]+, which serve for the quantitative detection, and [M - 1]+ at low intensity. The detection limits of the alcohols in methanol are between 0.007 and 0.025%. NH3 and the amines (CH3)3-nNHn also generate no fragment ions. Instead, they form adduct ions of the form [ROH...Hn+1N(CH3)3-n]+, where n = 0-3. The catalytic action of the fatty alcohols in the formation of the dimers ((CH3)3-nNHn)2H+ does interfere here, however. The detection limits by NH3-CIMS of the alcohols in a mixture are between 0.01 and 0.02%.

  8. Modeling alongshore propagating tides and currents around West Maui, Hawaii and implications for transport using Delft3D.

    NASA Astrophysics Data System (ADS)

    Vitousek, S.; Fletcher, C. H.; Storlazzi, C. D.

    2006-12-01

    Nearshore currents are driven by a number of components including tides, waves winds and even internal tides. To adequately simulate transport of sand and other constituents, the realistic behavior of the dominant current-generating phenomena should be resolved. This often requires sufficient observations and calibration/validation efforts to achieve realistic modeling results. The work explores the capabilities of modeling the currents along West Maui. The West Maui coast has a propagating tide where the observed peak tidal currents, which are directed parallel to the coast, occur very closely to the peak tidal water levels. In 2003, the USGS collected an extensive set of current observations along West Maui, Hawaii, with the goal of better understanding transport mechanisms of sediment, larvae, pollutants and other particles in coral reef settings. The observations included vessel mounted ADCP surveys and an array seafloor instruments at the 10m isobath along the coast. A simple 2DH model of West Maui using Delft3D shows good comparison of the modeled and observed currents. Nearshore currents driven by waves and winds are also considered. During the data collection period a significant erosion event occurred within the study domain at Kaanapali Beach. This event undermined several trees on the shoreline and threatened resort infrastructure. In modeling the nearshore currents of this region we hope to determine the potential for sand transport and shoreline change to hindcast this event.

  9. Comparative studies on the concentration of rare earth elements and heavy metals in the atmospheric particulate matter in Beijing, China, and in Delft, The Netherlands.

    PubMed

    Wang, C X; Zhu, W; Peng, A; Guichreit, R

    2001-05-01

    Atmospheric particulate matter (APM) was collected at three sampling sites in Beijing, China, from February to June 1998. The concentrations of rare earth elements (REE) and cobalt (Co), zinc (Zn), copper (Cu), cadmium (Cd) and lead (Pb) in the APM were determined by inductively coupled plasma mass spectrometry (ICP-MS). The results obtained in Beijing, China, were compared to that obtained in Delft, the Netherlands, in 1997. The influence of coal combustion was considered. The results demonstrated that the content of APM, the concentrations of REE and Co, Zn, Cd, Pb in the APM in Beijing, China, were higher than that in Delft, the Netherlands. From the ratios of La to Ce, and La to Sm, which may be used as tracers for the origin of the REE, it is concluded that the origins of REE in China differ from those in the Netherlands. PMID:11392744

  10. Atmospheric amines and ammonia measured with a Chemical Ionization Mass Spectrometer (CIMS)

    NASA Astrophysics Data System (ADS)

    You, Y.; Kanawade, V. P.; de Gouw, J. A.; Guenther, A. B.; Madronich, S.; Sierra-Hernández, M. R.; Lawler, M.; Smith, J. N.; Takahama, S.; Ruggeri, G.; Koss, A.; Olson, K.; Baumann, K.; Weber, R. J.; Nenes, A.; Guo, H.; Edgerton, E. S.; Porcelli, L.; Brune, W. H.; Goldstein, A. H.; Lee, S.-H.

    2014-06-01

    We report ambient measurements of amines and ammonia with a~fast response chemical ionization mass spectrometer (CIMS) in a southeastern US forest in Alabama and a~moderately polluted Midwestern site during the summer. In the Alabama forest, mostly C3-amines (from pptv to tens of pptv) and ammonia (up to 2 ppbv) were detected on a daily basis. C3-amines and ammonia showed similar diurnal trends and temperature and wind direction dependences, and were not associated with transported CO and SO2 plumes. Consistent with temperature dependences, amine and ammonia in the gas and aerosol phases showed opposite diurnal trends, indicating gas-to-particle partitioning of amines and ammonia. Temperature dependences also imply reversible processes of amines and ammonia evaporation from soil surfaces in daytime and deposition of amines and ammonia to soil surfaces at nighttime. Various amines (C1-C6) at the pptv level were observed in the transported biomass burning plumes, showing that biomass burning can be a substantial source of amines in the Southeast US. At the moderately polluted Kent site, higher concentrations of amines (C1-C6, from pptv to tens of pptv) and ammonia (up to 6 ppbv) were detected. Diurnal variations of C1- to C3-amines and ammonia were correlated with the ambient temperature. C4- to C6-amines showed abrupt increases during the nighttime, suggesting that they were emitted from local sources. These abundant amines and ammonia may in part explain the frequent new particle formation events reported from Kent. Lower amine concentrations at the rural forested site highlight the importance of constraining anthropogenic sources of amines.

  11. Atmospheric amines and ammonia measured with a chemical ionization mass spectrometer (CIMS)

    NASA Astrophysics Data System (ADS)

    You, Y.; Kanawade, V. P.; de Gouw, J. A.; Guenther, A. B.; Madronich, S.; Sierra-Hernández, M. R.; Lawler, M.; Smith, J. N.; Takahama, S.; Ruggeri, G.; Koss, A.; Olson, K.; Baumann, K.; Weber, R. J.; Nenes, A.; Guo, H.; Edgerton, E. S.; Porcelli, L.; Brune, W. H.; Goldstein, A. H.; Lee, S.-H.

    2014-11-01

    We report measurements of ambient amines and ammonia with a fast response chemical ionization mass spectrometer (CIMS) in a southeastern US forest and a moderately polluted midwestern site during the summer. At the forest site, mostly C3-amines (from pptv to tens of pptv) and ammonia (up to 2 ppbv) were detected, and they both showed temperature dependencies. Aerosol-phase amines measured thermal-desorption chemical ionization mass spectrometer (TDCIMS) showed a higher mass fraction in the evening with cooler temperatures and lower in the afternoon with warmer temperatures, a trend opposite to the gas-phase amines. Concentrations of aerosol-phase primary amines measured with Fourier transform infrared spectroscopy (FTIR) from micron and submicron particles were 2 orders of magnitude higher than the gas-phase amines. These results indicate that gas to particle conversion is one of the major processes that control the ambient amine concentrations at this forest site. Temperature dependencies of C3-amines and ammonia also imply reversible processes of evaporation of these nitrogen-containing compounds from soil surfaces in daytime and deposition to soil surfaces at nighttime. During the transported biomass burning plume events, various amines (C1-C6) appeared at the pptv level, indicating that biomass burning is a substantial source of amines in the southeastern US. At the moderately polluted Kent site, there were higher concentrations of C1- to C6-amines (pptv to tens of pptv) and ammonia (up to 6 ppbv). C1- to C3-amines and ammonia were well correlated with the ambient temperature. C4- to C6-amines showed frequent spikes during the nighttime, suggesting that they were emitted from local sources. These abundant amines and ammonia may in part explain the frequent new particle formation events reported from Kent. Higher amine concentrations measured at the polluted site than at the rural forested site highlight the importance of constraining anthropogenic emission

  12. Atmospheric Amines and Ammonia Measured with a Chemical Ionization Mass Spectrometer (CIMS)

    SciTech Connect

    You, Y.; Kanawade, V. P.; de Gouw, J. A.; Guenther, Alex B.; Madronich, Sasha; Sierra-Hernandez, M. R.; Lawler, M.; Smith, James N.; Takahama, S.; Ruggeri, G.; Koss, A.; Olson, K.; Baumann, K.; Weber, R. J.; Nenes, A.; Guo, H.; Edgerton, Eric S.; Porcelli, L.; Brune, W. H.; Goldstein, Allen H.; Lee, S.-H

    2014-11-19

    We report ambient measurements of amines and ammonia with a fast response chemical ionization mass spectrometer (CIMS) in a Southeastern U.S. forest in Alabama and a moderately polluted Midwestern site during the summer. In the Alabama forest, mostly C3-amines (from pptv to tens of pptv) and ammonia (up to 2 ppbv) were detected on a daily basis. C3-amines and ammonia showed similar diurnal trends and temperature and wind direction dependences, and were not associated with transported CO and SO2 plumes. Consistent with temperature dependences, amine and ammonia in the gas and aerosol phases showed opposite diurnal trends, indicating gas-to-particle partitioning of amines and ammonia. Temperature dependences also imply reversible processes of amines and ammonia evaporation from soil surfaces in daytime and deposition of amines and ammonia to soil surfaces at nighttime. Various amines (C1-C6) at the pptv level were observed in the transported biomass burning plumes, showing that biomass burning can be a substantial source of amines in the Southeast U.S. At the moderately polluted Kent site, higher concentrations of amines (C1-C6, from pptv to tens of pptv) and ammonia (up to 6 ppbv) were detected. Diurnal variations of C1- to C3-amines and ammonia were correlated with the ambient temperature. C4- to C6-amines showed abrupt increases during the nighttime, suggesting that they were emitted from local sources. These abundant amines and ammonia may in part explain the frequent new particle formation events reported from Kent. Lower amine concentrations at the rural forested site highlight the importance of constraining anthropogenic sources of amines.

  13. Measurements of gaseous H2SO4 by AP-ID-CIMS during CAREBeijing 2008 Campaign

    NASA Astrophysics Data System (ADS)

    Zheng, J.; Hu, M.; Zhang, R.; Yue, D.; Wang, Z.; Guo, S.; Li, X.; Bohn, B.; Shao, M.; He, L.; Huang, X.; Wiedensohler, A.; Zhu, T.

    2011-08-01

    As part of the 2008 Campaign of Air Quality Research in Beijing and Surrounding Regions (CAREBeijing 2008), measurements of gaseous sulfuric acid (H2SO4) have been conducted at an urban site in Beijing, China from 7 July to 25 September 2008 using atmospheric pressure ion drift - chemical ionization mass spectrometry (AP-ID-CIMS). This represents the first gaseous H2SO4 measurements in China. Diurnal profile of sulfuric acid is strongly dependent on the actinic flux, reaching a daily maximum around noontime and with an hourly average concentration of 5 × 106 molecules cm-3. Simulation of sulfuric acid on the basis of the measured sulfur dioxide concentration, photolysis rates of ozone and nitrogen dioxide, and aerosol surface areas captures the trend of the measured H2SO4 diurnal variation within the uncertainties, indicating that photochemical production and condensation onto preexisting particle surface dominate the observed diurnal H2SO4 profile. The frequency of the peak H2SO4 concentration exceeding 5 × 106 molecules cm-3 increases by 16 % during the period of the summer Olympic Games (8-24 August 2008), because of the implementation of air quality control regulations. Using a multivariate statistical method, the critical nucleus during nucleation events is inferred, containing two H2SO4 molecules (R2 = 0.85). The calculated condensation rate of H2SO4 can only account for 10-25 % of PM1 sulfate formation, indicating that either much stronger sulfate production exists at the SO2 source region or other sulfate production mechanisms are responsible for the sulfate production.

  14. Delft3D Storm Surge Simulation of Typhoon Haiyan for Projection of Coastal Inundation in the Visayas Islands, Philippines

    NASA Astrophysics Data System (ADS)

    Suarez, J. K. B.; Cabacaba, K. M.; Biton, N. I.; Cuadra, C.; Santiago, J. T.; Mendoza, J.; Lagmay, A. M. F. A.

    2014-12-01

    The Philippines is geographically prone to tropical cyclones with an annual average of 20 typhoons entering the country's area of responsibility. On 08 November 2013, a Category 5 Typhoon Haiyan with maximum one-minute sustained wind speed of 315 kph, hit the central area of the archipelago. The damage from the typhoon reached two billion US dollars with 6,300 reported casualties. The adverse impacts of possible future storm surge events in the Philippine archipelago specifically in the Visayan region can only be mitigated if a storm surge model that will include the inundation of the coastal areas is generated. The hydrodynamic modeling software, Delft3D, was used in the storm surge simulation of the Visayas Islands. An overall model of the Visayas with a coarse grid cell size was nested to a detailed model on hardly stricken populated areas with a 10-m per pixel resolution Digital Elevation Model and General Bathymetric Chart of the Oceans bathymetry. Due to lack of observed water level data during the onslaught of Typhoon Haiyan, the overall Visayas model was calibrated by simulating previous typhoons with recorded data acquired from tide stations. Several simulations were carried out to generate farthest possible inland incursion of storm surges. This was done by translating the actual typhoon track vertically and horizontally with a specified increment. The output of the study is a storm surge inundation map that can be used to determine safe zones for development of infrastructure near coastal areas. The storm surge inundation map can also be used as basis for disaster preparedness plans of coastal communities threatened by approaching typhoons.

  15. Delft3D Storm Surge Simulation of Typhoon Haiyan for Projection of Coastal Inundation in the Visayas Islands, Philippines

    NASA Astrophysics Data System (ADS)

    Suarez, John Kenneth; Cabacaba, Krichi May; Biton, Nophi Ian; Cuadra, Camille; Santiago, Joy; Mendoza, Jerico; Mahar Francisco Lagmay, Alfredo

    2015-04-01

    The Philippines is geographically prone to tropical cyclones with an annual average of 20 typhoons entering the country's area of responsibility. Majority of these typhoons pass through the central part of the archipelago in the Visayas Region. On 08 November 2013, a Category 5 Typhoon Haiyan with maximum ten-minute sustained wind speed of 230 kph hit the Visayas region causing damage amounting to two billion US dollars with 6,300 reported casualties. The adverse impacts of future storm surge events in the Philippine archipelago, specifically in the Visayan region, can be mitigated if a storm surge model that will include the inundation of coastal areas is generated. The hydrodynamic modeling software, Delft3D, was used in creating hydrodynamic models for areas in the Visayas Islands. High resolution hydrodynamic models of the hardly stricken areas with 10-m per pixel resolution Digital Elevation Model and General Bathymetric Chart of the Oceans bathymetry were nested to an overall model of Visayas with a coarse grid cell size. Due to the lack of observed water level data during the onslaught of Typhoon Haiyan, the overall Visayas model was calibrated by creating hydrodynamic models for the same Haiyan-affected areas using previous typhoons with recorded data acquired from tide stations as wind forcing. Several simulations were carried out to generate the farthest possible inland incursion of storm surges. This was done by translating the actual typhoon track vertically and horizontally with a specified increment. The output of the study is a storm surge inundation map showing the worst case scenario of inundation for a Category 5 typhoon. This storm surge inundation map can be used to determine safe zones for development of infrastructure near coastal areas. The storm surge inundation map can also be used as basis for disaster preparedness plans of coastal communities threatened by approaching typhoons.

  16. Development of Inundation Map for Bantayan Island, Cebu Using Delft3D-Flow Storm Surge Simulations of Typhoon Haiyan

    NASA Astrophysics Data System (ADS)

    Cuadra, Camille; Suarez, John Kenneth; Biton, Nophi Ian; Cabacaba, Krichi May; Lapidez, John Phillip; Santiago, Joy; Mahar Francisco Lagmay, Alfredo; Malano, Vicente

    2014-05-01

    On average, 20 typhoons enter the Philippine area of responsibility annually, making it vulnerable to different storm hazards. Apart from the frequency of tropical cyclones, the archipelagic nature of the country makes it particularly prone to storm surges. On 08 November 2013, Haiyan, a Category 5 Typhoon with maximum one-minute sustained wind speed of 315 kph, hit the central region of the Philippines. In its path, the howler devastated Bantayan Island, a popular tourist destination. The island is located north of Cebu City, the second largest metropolis of the Philippines in terms of populace. Having been directly hit by Typhoon Haiyan, Bantayan Island was severely damaged by strong winds and storm surges, with more than 11,000 houses totally destroyed while 5,000 more suffered minor damage. The adverse impacts of possible future storm surge events in the island can only be mitigated if hazard maps that depict inundation of the coastal areas of Bantayan are generated. To create such maps, Delft3D-Flow, a hydrodynamic model was used to simulate storm surges. These simulations were made over a 10-m per pixel resolution Digital Elevation Model (DEM) and the General Bathymetric Chart of the Oceans (GEBCO) bathymetry. The results of the coastal inundation model for Typhoon Haiyan's storm surges were validated using data collected from field work and local government reports. The hydrodynamic model of Bantayan was then calibrated using the field data and further simulations were made with varying typhoon tracks. This was done to generate scenarios on the farthest possible inland incursion of storm surges. The output of the study is a detailed storm surge inundation map that depicts safe zones for development of infrastructure near coastal areas and for construction of coastal protection structures. The storm surge inundation map can also be used as basis for disaster preparedness plans of coastal communities threatened by approaching typhoons.

  17. Design of a microprocessor-based Control, Interface and Monitoring (CIM unit for turbine engine controls research

    NASA Technical Reports Server (NTRS)

    Delaat, J. C.; Soeder, J. F.

    1983-01-01

    High speed minicomputers were used in the past to implement advanced digital control algorithms for turbine engines. These minicomputers are typically large and expensive. It is desirable for a number of reasons to use microprocessor-based systems for future controls research. They are relatively compact, inexpensive, and are representative of the hardware that would be used for actual engine-mounted controls. The Control, Interface, and Monitoring Unit (CIM) contains a microprocessor-based controls computer, necessary interface hardware and a system to monitor while it is running an engine. It is presently being used to evaluate an advanced turbofan engine control algorithm.

  18. Characterization of the mass-dependent transmission efficiency of a CIMS

    NASA Astrophysics Data System (ADS)

    Heinritzi, Martin; Simon, Mario; Steiner, Gerhard; Wagner, Andrea C.; Kürten, Andreas; Hansel, Armin; Curtius, Joachim

    2016-04-01

    Knowledge about mass discrimination effects in a chemical ionization mass spectrometer (CIMS) is crucial for quantifying, e.g., the recently discovered extremely low volatile organic compounds (ELVOCs) and other compounds for which no calibration standard exists so far. Here, we present a simple way of estimating mass discrimination effects of a nitrate-based chemical ionization atmospheric pressure interface time-of-flight (CI-APi-TOF) mass spectrometer. Characterization of the mass discrimination is achieved by adding different perfluorinated acids to the mass spectrometer in amounts sufficient to deplete the primary ions significantly. The relative transmission efficiency can then be determined by comparing the decrease of signals from the primary ions and the increase of signals from the perfluorinated acids at higher masses. This method is in use already for PTR-MS; however, its application to a CI-APi-TOF brings additional difficulties, namely clustering and fragmentation of the measured compounds, which can be treated with statistical analysis of the measured data, leading to self-consistent results. We also compare this method to a transmission estimation obtained with a setup using an electrospray ion source, a high-resolution differential mobility analyzer and an electrometer, which estimates the transmission of the instrument without the CI source. Both methods give different transmission curves, indicating non-negligible mass discrimination effects of the CI source. The absolute transmission of the instrument without the CI source was estimated with the HR-DMA method to plateau between the m/z range of 127 and 568 Th at around 1.5 %; however, for the CI source included, the depletion method showed a steady increase in relative transmission efficiency from the m/z range of the primary ion (mainly at 62 Th) to around 550 Th by a factor of around 5. The main advantages of the depletion method are that the instrument is used in the same operation mode as

  19. The Carbapenem Inactivation Method (CIM), a Simple and Low-Cost Alternative for the Carba NP Test to Assess Phenotypic Carbapenemase Activity in Gram-Negative Rods

    PubMed Central

    van der Zwaluw, Kim; de Haan, Angela; Pluister, Gerlinde N.; Bootsma, Hester J.; de Neeling, Albert J.; Schouls, Leo M.

    2015-01-01

    A new phenotypic test, called the Carbapenem Inactivation Method (CIM), was developed to detect carbapenemase activity in Gram-negative rods within eight hours. This method showed high concordance with results obtained by PCR to detect genes coding for the carbapenemases KPC, NDM, OXA-48, VIM, IMP and OXA-23. It allows reliable detection of carbapenemase activity encoded by various genes in species of Enterobacteriaceae (e.g., Klebsiella pneumoniae, Escherichia coli and Enterobacter cloacae), but also in non-fermenters Pseudomonas aeruginosa and Acinetobacter baumannii. The CIM was shown to be a cost-effective and highly robust phenotypic screening method that can reliably detect carbapenemase activity. PMID:25798828

  20. Cross-institutional Flood Forecasting in Regional Water Systems;Innovative application of Delft-FEWS in The Netherlands

    NASA Astrophysics Data System (ADS)

    van Heeringen, Klaas-Jan; Douben, Klaas-Jan; van de Wouw, Mark; IJpelaar, Ruben; van Loenen, Arnejan

    2015-04-01

    The regional water system in the North-Brabant province in The Netherlands is (operationally) managed by four different Water Authorities: Rijkswaterstaat Southern-Netherlands, and the three Regional Water Authorities (RWA's) Aa & Maas, De Dommel and Brabantse Delta. The water systems basically consist of mid-sized (navigable) canals, semi-natural brook valleys in mildly sloping sandy soils, and man-made watercourses in clayey polder areas. The management areas of the De Dommel and Brabantse Delta RWA's are bordering Belgium over a total length of approx. 185 km, and are prone to transboundary flood flows. The current project 'Dynamic Water Management' intends to improve the mutual cooperation and communication between the RWA's and Rijkswaterstaat during periods of both high and low water stages. The project deals with governance issues such as water agreements and water systems analyses. A powerful product of the project is a DSS for flood forecasting ('DSS Brabant'). One of the main benefits of cooperation between the RWA's and Rijkswaterstaat is to enable assistance during peak flows and flood events and to try to optimise operational water systems management by deploying drainage and storage facilities by using the connecting (navigable) canals. A set of hydraulic structures like pumps, weirs and sluices facilitate the control and routing of the water flows. Especially during peak flow and flood events, these canals allow to deviate excess flow to neighbours who suffer less from flooding. During regular conditions the water systems are fully independent, but during floods connections are made by using the canal system. The heart of DSS Brabant consists of a Delft-FEWS application, containing several RTC (1st) and hydrodynamic Sobek (2nd order) models FEWS is receiving a variety of data on hourly or six-hourly basis, consisting of measured and forecasted meteorological input (radar-precipitation/HIRLAM, evaporation and wind), water levels and discharges at

  1. Assessment Of Mold-Design Dependent Textures In CIM-Components By Polarized Light Optical Texture Analysis (PLOTA)

    SciTech Connect

    Kern, Frank; Rauch, Johannes; Gadow, Rainer

    2007-04-07

    By thermoplastic ceramic injection moulding (CIM) ceramic components of high complexity can be produced in a large number of items at low dimensional tolerances. The cost advantage by the high degree of automation leads to an economical mass-production. The structure of injection-moulded components is determined by the form filling behaviour and viscosity of the feedstock, the machine parameters, the design of the mold and the gate design. With an adapted mold- and gate-design CIM-components without textures are possible. The ''Polarized Light Optical Texture analysis'' (PLOTA) makes it possible to inspect the components and detect and quantify the textures produced by a new mold. Based on the work of R. Fischer (2004) the PLOTA procedure was improved by including the possibility to measure the inclination angle and thus describe the orientation of the grains in three dimensions. Sampled thin sections of ceramic components are analysed under the polarization microscope and are brought in diagonal position. Pictures are taken with a digital camera. The pictures are converted in the L*a*b*- colour space and the crystals color values a* and b* in the picture are measured. The color values are compared with the values of a quartz wedge, which serves as universal standard. From the received values the inclination angle can be calculated relative to the microscope axis. It is possible to use the received data quantitatively e.g. for the FEM supported simulation of texture-conditioned divergences of mechanical values. Thus the injection molding parameters can be optimized to obtain improved mechanical properties.

  2. Assessment Of Mold-Design Dependent Textures In CIM-Components By Polarized Light Optical Texture Analysis (PLOTA)

    NASA Astrophysics Data System (ADS)

    Kern, Frank; Rauch, Johannes; Gadow, Rainer

    2007-04-01

    By thermoplastic ceramic injection moulding (CIM) ceramic components of high complexity can be produced in a large number of items at low dimensional tolerances. The cost advantage by the high degree of automation leads to an economical mass-production. The structure of injection-moulded components is determined by the form filling behaviour and viscosity of the feedstock, the machine parameters, the design of the mold and the gate design. With an adapted mold- and gate-design CIM-components without textures are possible. The "Polarized Light Optical Texture analysis" (PLOTA) makes it possible to inspect the components and detect and quantify the textures produced by a new mold. Based on the work of R. Fischer (2004) the PLOTA procedure was improved by including the possibility to measure the inclination angle and thus describe the orientation of the grains in three dimensions. Sampled thin sections of ceramic components are analysed under the polarization microscope and are brought in diagonal position. Pictures are taken with a digital camera. The pictures are converted in the L*a*b*- colour space and the crystals color values a* and b* in the picture are measured. The color values are compared with the values of a quartz wedge, which serves as universal standard. From the received values the inclination angle can be calculated relative to the microscope axis. It is possible to use the received data quantitatively e.g. for the FEM supported simulation of texture-conditioned divergences of mechanical values. Thus the injection molding parameters can be optimized to obtain improved mechanical properties.

  3. Field Measurements Of Ammonia Fluxes Above A Douglas-fir Forest In Speuld, Holland Using Chemical Ionization Mass Spectrometry (CIMS)

    NASA Astrophysics Data System (ADS)

    McGillen, M. R.; Gallagher, M. W.; Flynn, M. J.; Percival, C. J.

    2009-12-01

    Ammonia (NH3) is an important component of the atmospheric nitrogenous species on regional scales and is a major contributor to the nitrogen budget across the UK and Western Europe. It represents the major atmospheric alkaline gas and in its interaction with acidic gases such as nitric acid, leads to the formation of particulate matter (e.g., Asman, 1998). As sulphur emissions decline across Western Europe, regions of excess ammonia are becoming more widespread and ammonium nitrate aerosol is becoming a significant component of atmospheric nitrogen . NH3 is efficiently lost to the semi-natural vegetation, typical of many natural ecosystems prevalent in Western Europe. Deposition of atmospheric NH3 to ecosystems can lead to deleterious effects such as eutrophication and acidification of soils, contributing to forest decline and a decrease in biological diversity (e.g., Fangmeier et al., 1994). Ammonia measurements were performed using chemical ionization mass spectrometry (CIMS) utilizing the protonated acetone dimer as the precursor ion. NH3 flux measurements were evaluated using the eddy covariance technique at a height of 46m above ground at Speuld forest. The Speuld fieldsite is a mature plantation of Douglas-fir (Pseudotsuga menziesii), located in the centre of the Netherlands (52°13'N, 5 ° 39'E). Data was collected over a two week period (June 25th - July 8th 2009), and fluxes will be determined using the eddy covariance technique. To the authors’ knowledge, these measurements represent the only NH3 flux measurements using CIMS, indeed few studies exist that directly determine fluxes using the this technique. Eddy covariance flux measurements are the most direct way to estimate NH3 removal near the surface. Preliminary data will be presented and compared with the GRadient Ammonia High Accuracy Monitor (GRAHAM) method. References: Asman, W. A. H., Sutton, M. A., and Schjorring, J. K.: Ammonia: emission, atmospheric transport and deposition, New Phytol., 139

  4. Investigations of Acetate Chemical Ionization Mass Spectrometry (NIPT-CIMS): Underlying Chemistry, Calibrations, and Operational Considerations for the Detection of Carboxylic Acids and Other Species

    NASA Astrophysics Data System (ADS)

    Brophy, P.; Farmer, D.

    2015-12-01

    The growing use of high resolution time-of-flight chemical ionization mass spectrometers (HR-TOF-CIMS) as applied to gas and particle measurements requires a thorough understanding of the underlying chemistry to ensure accurate molecular identification. These systems are deployed using a number of reagent ion chemistries in both the positive and negative mode. Moreover, high resolution time-of-flight mass spectrometers make it possible to detect and (potentially) quantify species without the use of authentic standards. Acetate CIMS (or negative-ion proton-transfer CIMS) detects species by abstracting a proton from carboxylic acids, nitrated phenols, and other species with acidic protons. Clustering reactions are also known to occur, complicating analysis. proper interpretation of the mass spectra requires understanding these mechanisms and controlling for unwanted ionization processes. We investigate the ability to control for clustering reactions using authentic standards under various clustering regimes while maintaining ion transmission efficiency in simple and complex matrices. The feasibility of using isotopically labeled acetate to unambiguously identify clusters is also investigated. Bulk metrics for describing the spectra (oxygen:carbon, oxidation state, average carbon number, etc) are also investigated to understand their susceptibility to experimental configuration.

  5. Linagliptin Limits High Glucose Induced Conversion of Latent to Active TGFß through Interaction with CIM6PR and Limits Renal Tubulointerstitial Fibronectin

    PubMed Central

    Gangadharan Komala, Muralikrishna; Gross, Simon; Zaky, Amgad; Pollock, Carol; Panchapakesan, Usha

    2015-01-01

    Background In addition to lowering blood glucose in patients with type 2 diabetes mellitus, dipeptidyl peptidase 4 (DPP4) inhibitors have been shown to be antifibrotic. We have previously shown that cation independent mannose-6-phosphate receptor (CIM6PR) facilitates the conversion of latent to active transforming growth factor β1 (GFß1) in renal proximal tubular cells (PTCs) and linagliptin (a DPP4 inhibitor) reduced this conversion with downstream reduction in fibronectin transcription. Objective We wanted to demonstrate that linagliptin reduces high glucose induced interaction between membrane bound DPP4 and CIM6PR in vitro and demonstrate reduction in active TGFß mediated downstream effects in a rodent model of type 1 diabetic nephropathy independent of high glycaemic levels. Materials and Methods We used human kidney 2 (HK2) cells and endothelial nitric oxide synthase knock out mice to explore the mechanism and antifibrotic potential of linagliptin independent of glucose lowering. Using a proximity ligation assay, we show that CIM6PR and DPP4 interaction was increased by high glucose and reduced by linagliptin and excess mannose-6-phosphate (M6P) confirming that linagliptin is operating through an M6P-dependent mechanism. In vivo studies confirmed these TGFß1 pathway related changes and showed reduced fibronectin, phosphorylated smad2 and phosphorylated smad2/3 (pSmad2/3) with an associated trend towards reduction in tubular atrophy, which was independent of glucose lowering. No reduction in albuminuria, glomerulosclerotic index or cortical collagen deposition was observed. Conclusion Linagliptin inhibits activation of TGFß1 through a M6P dependent mechanism. However this in isolation is not sufficient to reverse the multifactorial nature of diabetic nephropathy. PMID:26509887

  6. Aqueous-phase photooxidation of levoglucosan - a mechanistic study using aerosol time-of-flight chemical ionization mass spectrometry (Aerosol ToF-CIMS)

    NASA Astrophysics Data System (ADS)

    Zhao, R.; Mungall, E. L.; Lee, A. K. Y.; Aljawhary, D.; Abbatt, J. P. D.

    2014-09-01

    Levoglucosan (LG) is a widely employed tracer for biomass burning (BB). Recent studies have shown that LG can react rapidly with hydroxyl (OH) radicals in the aqueous phase despite many mass balance receptor models assuming it to be inert during atmospheric transport. In the current study, aqueous-phase photooxidation of LG by OH radicals was performed in the laboratory. The reaction kinetics and products were monitored by aerosol time-of-flight chemical ionization mass spectrometry (Aerosol ToF-CIMS). Approximately 50 reaction products were detected by the Aerosol ToF-CIMS during the photooxidation experiments, representing one of the most detailed product studies yet performed. By following the evolution of mass defects of product peaks, unique trends of adding oxygen (+O) and removing hydrogen (-2H) were observed among the products detected, providing useful information for determining potential reaction mechanisms and sequences. Additionally, bond-scission reactions take place, leading to reaction intermediates with lower carbon numbers. We introduce a data analysis framework where the average oxidation state (OSc) is plotted against a novel molecular property: double-bond-equivalence-to-carbon ratio (DBE/#C). The trajectory of LG photooxidation on this plot suggests formation of polycarbonyl intermediates and their subsequent conversion to carboxylic acids as a general reaction trend. We also determined the rate constant of LG with OH radicals at room temperature to be 1.08 ± 0.16 × 109 M-1 s-1. By coupling an aerosol mass spectrometer (AMS) to the system, we observed a rapid decay of the mass fraction of organic signals at mass-to-charge ratio 60 (f60), corresponding closely to the LG decay monitored by the Aerosol ToF-CIMS. The trajectory of LG photooxidation on a f44-f60 correlation plot matched closely to literature field measurement data. This implies that aqueous-phase photooxidation might be partially contributing to aging of BB particles in the

  7. Aqueous-phase photooxidation of levoglucosan - a mechanistic study using Aerosol Time of Flight Chemical Ionization Mass Spectrometry (Aerosol-ToF-CIMS)

    NASA Astrophysics Data System (ADS)

    Zhao, R.; Mungall, E. L.; Lee, A. K. Y.; Aljawhary, D.; Abbatt, J. P. D.

    2014-04-01

    Levoglucosan (LG) is a widely employed tracer for biomass burning (BB). Recent studies have shown that LG can react rapidly with hydroxyl (OH) radicals in the aqueous phase, despite many mass balance receptor models assuming it to be inert during atmospheric transport. In the current study, aqueous-phase photooxidation of LG by OH radicals was performed in the laboratory. The reaction kinetics and products were monitored by Aerosol Time of Flight Chemical Ionization Mass Spectrometry (Aerosol-ToF-CIMS). Approximately 50 reaction products were detected by the Aerosol-ToF-CIMS during the photooxidation experiments, representing one of the most detailed product studies yet performed. By following the evolution of mass defects of product peaks, unique trends of adding oxygen (+O) and removing hydrogen (-2H) were observed among the products detected, providing useful information to determine potential reaction mechanisms and sequences. As well, bond scission reactions take place, leading to reaction intermediates with lower carbon numbers. We introduce a data analysis framework where the average oxidation state (OSc) is plotted against a novel molecular property: double bond equivalence to carbon ratio (DBE / #C). The trajectory of LG photooxidation on this plot suggests formation of poly-carbonyl intermediates and their subsequent conversion to carboxylic acids as a general reaction trend. We also determined the rate constant of LG with OH radicals at room temperature to be 1.08 ± 0.16 × 109 M-1 s-1. By coupling an Aerosol Mass Spectrometer (AMS) to the system, we observed a rapid decay of the mass fraction of organic signals at mass-to-charge ratio 60 (f60), corresponding closely to the LG decay monitored by the Aerosol-ToF-CIMS. The trajectory of LG photooxidation on a f44-f60 correlation plot matched closely to literature field measurement data. This implies that aqueous-phase photooxidation might be partially contributing to aging of BB particles in the ambient

  8. Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis

    PubMed Central

    Moore, Michael; Zhang, Chaolin; Gantman, Emily Conn; Mele, Aldo; Darnell, Jennifer C.; Darnell, Robert B.

    2014-01-01

    Summary Identifying sites where RNA binding proteins (RNABPs) interact with target RNAs opens the door to understanding the vast complexity of RNA regulation. UV-crosslinking and immunoprecipitation (CLIP) is a transformative technology in which RNAs purified from in vivo cross-linked RNA-protein complexes are sequenced to reveal footprints of RNABP:RNA contacts. CLIP combined with high throughput sequencing (HITS-CLIP) is a generalizable strategy to produce transcriptome-wide RNA binding maps with higher accuracy and resolution than standard RNA immunoprecipitation (RIP) profiling or purely computational approaches. Applying CLIP to Argonaute proteins has expanded the utility of this approach to mapping binding sites for microRNAs and other small regulatory RNAs. Finally, recent advances in data analysis take advantage of crosslinked-induced mutation sites (CIMS) to refine RNA-binding maps to single-nucleotide resolution. Once IP conditions are established, HITS-CLIP takes approximately eight days to prepare RNA for sequencing. Established pipelines for data analysis, including for CIMS, take 3-4 days. PMID:24407355

  9. Applications of online high resolution time of flight chemical ionization mass spectrometry (HRToF-CIMS): opportunities and challenges for aircraft measurements, atmosphere-ecosystem exchange, and organic aerosol composition

    NASA Astrophysics Data System (ADS)

    Thornton, J. A.; Lopez-Hilfiker, F.; Lee, B. H.; D'Ambro, E.; Mohr, C.; Gaston, C.; Schobesberger, S.

    2015-12-01

    Over the past five years, field deployable high resolution time of flight chemical ionization mass spectrometers (HRToF-CIMS) have been developed and deployed for a range of problems relevant to atmospheric chemistry. The inherent duty cycle, dynamic range, mass accuracy, and resolving power of these instruments provide transformative capabilities for deriving new insights into atmospheric composition. We present examples of these capabilities from the deployments of the University of Washington HRToF-CIMS aboard research aircraft, an eddy flux tower in a boreal forest, and to measure organic aerosol composition upon temperature-programmed thermal desorption in field and chamber experiments. Specific examples include measurements of reactive halogens with all relevant isotopes simultaneously resolved from potential interferences, the opportunity for discovery, after the fact, of previously unmeasured or unexpected compounds with acquisition of the full mass spectrum, and providing a broad survey of the 100s of organic compounds that desorb from complex isoprene and monoterpene derived secondary organic aerosol matrices. While there are unique opportunities, there are also significant technical challenges to realizing the full analytical potential these instruments can provide. Many of these challenges are common to any analytical technique, but perhaps seemingly more demanding for HRToF-CIMS, such as the presumed need to calibrate 100s of molecular ion signals routinely detected in each spectrum. We detail some of the more pressing challenges and our approach towards addressing them.

  10. Measurement of pernitric acid (HO2NO2) using chemical ionization mass spectrometry (CIMS) with I-·H2O as the reagent ions: instrumentation and observations

    NASA Astrophysics Data System (ADS)

    Chen, D.; Huey, L. G.; Tanner, D.; Ng, N. L.; Li, J.; Dibb, J. E.; Wang, Y.

    2015-12-01

    Peroxynitric acid (HO2NO2) is formed by the association reaction of HO2 and NO2, which couples both the HOx (HO2+OH) and NOx (=NO2+NO) families. The thermal decomposition at higher temperatures is sufficiently fast that HO2NO2 is in steady state with HO2 and NO2. This allows HO2 levels to be inferred from HO2NO2 observations. In Polar Regions and higher altitudes, significant levels of HO2NO2 can build up and influences local HOx and NOx photochemistry. Here, we present an in situ measurement technique of HO2NO2 based on chemical ionization mass spectrometry (CIMS) using the reagent ion I- and its hydrated form I-·H2O, together with our calibration technique for HO2NO2 measurements. We will also present observations of HO2NO2: (1) in a polar boundary layer on top of the Greenland Ice Sheet during summer 2011, and (2) in an urban boundary layer in metropolitan Atlanta during winter 2014. The local chemistry of HO2NO2 at Summit will be evaluated. The local HO2 in Atlanta will be inferred and assessed with models.

  11. Deployment of a ground-based CIMS apparatus for the detection of organic gases in the boreal forest during the QUEST campaign

    NASA Astrophysics Data System (ADS)

    Sellegri, K.; Umann, B.; Hanke, M.; Arnold, F.

    2004-07-01

    Measurements of atmospheric volatile organic compounds were performed in the Finnish Boreal forest atmosphere during spring 2003, as part of the project QUEST (Quantification of Aerosol Nucleation in the European Boundary Layer), using a ground-based Chemical Ionization Mass Spectrometer (CIMS) instrument. Based on the study of their hydrate distribution, Methanol, Acetonitrile, Acetaldehyde, Dimethyl Amine (DMA), Ethanol/Formic Acid, Acetone, Trimethyl Amine TMA, Propanol/Acetic Acid, Methyl Vinyl Ketone (MVK) and Metacrolein (MaCR), Monoterpenes, Cis-3-hexenyl Acetate and Monoterpene Oxidation Products (MTOP) are proposed as candidates for masses 33, 41, 44, 45, 46, 58, 59, 60, 70, 136, 142 and 168 amu, respectively. It would be, to our knowledge, the first time DMA, TMA, MTOP and Cis-3-hexenyl Acetate are measured with this method. A compound with mass 68 amu, which could be Isoprene has also been identified. Most compounds show a clear diurnal variation with higher concentrations at night, starting at the onset of the nocturnal inversion and in agreement with independent measurements of CO. Biogenic compounds are highly correlated with each other and the ratio monoterpene/oxidation product shows a typical daily pattern of nighttime maxima. Cis-3-hexenyl Acetate has a diurnal variation similar to the ones of Isoprene and Monoterpenes, and especially close to the diurnal variation of their oxidation products.

  12. Deployment of a ground-based CIMS apparatus for the detection of organic gases in the boreal forest during the QUEST campaign

    NASA Astrophysics Data System (ADS)

    Sellegri, K.; Umann, B.; Hanke, M.; Arnold, F.

    2005-02-01

    Measurements of atmospheric volatile organic compounds were performed in the Finnish Boreal forest atmosphere during spring 2003, as part of the project QUEST (Quantification of Aerosol Nucleation in the European Boundary Layer), using a ground-based Chemical Ionization Mass Spectrometer (CIMS) instrument. Based on the study of their hydrate distribution, methanol, acetonitrile, acetaldehyde, dimethyl amine (DMA), ethanol/formic acid, acetone, trimethyl amine (TMA), propanol/acetic acid, isoprene, methyl vinyl ketone (MVK) and metacrolein (MaCR), monoterpenes and monoterpene oxidation product (MTOP) are proposed as candidates for masses 32, 41, 44, 45, 46, 58, 59, 60, 68, 70, 136, and 168amu, respectively. It would be, to our knowledge, the first time DMA, TMA and MTOP are measured with this method. Most compounds show a clear diurnal variation with a maximum in the early night, corresponding to the onset of the noctural inversion and in agreement with independant measurements of CO. Biogenic compounds are highly correlated with each other and the ratio monoterpene/oxidation product shows a typical daily pattern of nightime maxima. However, because isoprene mixing ratios are also maximum during the early night, it is likely that it suffers of the interference from another unidentified biogenic compound. Hence mass 68amu is identified as isoprene+compound X.

  13. Recovery of active anti TNF-α ScFv through matrix-assisted refolding of bacterial inclusion bodies using CIM monolithic support.

    PubMed

    Sushma, Krishnan; Bilgimol, Chuvappumkal Joseph; Vijayalakshmi, Mookambeswaran A; Satheeshkumar, Padikara Kutty

    2012-04-01

    Anti TNF-α molecules are important as therapeutic agents for many of the autoimmune diseases in chronic stage. Here we report the expression and purification of a recombinant single chain variable fragment (ScFv) specific to TNF-α from inclusion bodies. In contrast to the conventional on column refolding using the soft gel supports, an efficient methodology using monolithic matrix has been employed. Nickel (II) coupled to convective interaction media (CIM) support was utilized for this purpose with 6M guanidine hydrochloride (GuHCl) as the chaotropic agent. The protein purified after solubilization and refolding proved to be biologically active with an IC₅₀ value of 15 μg. To the best of our knowledge, this is the first report showing the application of methacrylate based chromatographic supports for matrix-assisted refolding and purification of Escherichia coli inclusion bodies. The results are promising to elaborate the methodology further to exploit the potential positive features of monoliths in protein refolding science. PMID:22386363

  14. A high-resolution time-of-flight chemical ionization mass spectrometer utilizing hydronium ions (H3O+ ToF-CIMS) for measurements of volatile organic compounds in the atmosphere

    NASA Astrophysics Data System (ADS)

    Yuan, Bin; Koss, Abigail; Warneke, Carsten; Gilman, Jessica B.; Lerner, Brian M.; Stark, Harald; de Gouw, Joost A.

    2016-07-01

    Proton transfer reactions between hydronium ions (H3O+) and volatile organic compounds (VOCs) provide a fast and highly sensitive technique for VOC measurements, leading to extensive use of proton-transfer-reaction mass spectrometry (PTR-MS) in atmospheric research. Based on the same ionization approach, we describe the development of a high-resolution time-of-flight chemical ionization mass spectrometer (ToF-CIMS) utilizing H3O+ as the reagent ion. The new H3O+ ToF-CIMS has sensitivities of 100-1000 cps ppb-1 (ion counts per second per part-per-billion mixing ratio of VOC) and detection limits of 20-600 ppt at 3σ for a 1 s integration time for simultaneous measurements of many VOC species of atmospheric relevance. The ToF analyzer with mass resolution (m/Δm) of up to 6000 allows the separation of isobaric masses, as shown in previous studies using similar ToF-MS. While radio frequency (RF)-only quadrupole ion guides provide better overall ion transmission than ion lens system, low-mass cutoff of RF-only quadrupole causes H3O+ ions to be transmitted less efficiently than heavier masses, which leads to unusual humidity dependence of reagent ions and difficulty obtaining a humidity-independent parameter for normalization. The humidity dependence of the instrument was characterized for various VOC species and the behaviors for different species can be explained by compound-specific properties that affect the ion chemistry (e.g., proton affinity and dipole moment). The new H3O+ ToF-CIMS was successfully deployed on the NOAA WP-3D research aircraft for the SONGNEX campaign in spring of 2015. The measured mixing ratios of several aromatics from the H3O+ ToF-CIMS agreed within ±10 % with independent gas chromatography measurements from whole air samples. Initial results from the SONGNEX measurements demonstrate that the H3O+ ToF-CIMS data set will be valuable for the identification and characterization of emissions from various sources, investigation of secondary

  15. FA-SIFT study of reactions of protonated water and ethanol clusters with [alpha]-pinene and linalool in view of their selective detection by CIMS

    NASA Astrophysics Data System (ADS)

    Dhooghe, F.; Amelynck, C.; Rimetz-Planchon, J.; Schoon, N.; Vanhaecke, F.

    2010-02-01

    The use of protonated water clusters and protonated ethanol clusters as reagent ions has been evaluated for the resolution of an interference encountered in CIMS when measuring monoterpenes (C10H16) and linalool (C10H18O) simultaneously. To this end, the reactions of H3O+.(H2O)n (n = 1-3), (C2H5OH)mH+ (m = 1-3) and (C2H5OH.H2O)H+ with [alpha]-pinene and linalool have been characterized in a flowing afterglow-selected ion flow tube (FA-SIFT) instrument at a SIFT He buffer gas pressure of 1.43 hPa and a temperature of 298 K. All reactions with linalool were found to occur at the collision limit. The reaction of (C2H5OH)2H+ with [alpha]-pinene proceeds at half the collision rate and both the reactions of (C2H5OH)3H+ and H3O+.(H2O)3 with [alpha]-pinene have a very low rate constant. All other reactions involving [alpha]-pinene proceed at the collision rate. The reactions of H3O+.H2O, H3O+.(H2O)2, C2H5OH2+, (C2H5OH.H2O)H+ and (C2H5OH)2H+ with [alpha]-pinene mainly proceed by proton transfer. Additionally, ligand switching channels have been observed for the reactions of (C2H5OH)2H+ and H3O+.(H2O)2 with [alpha]-pinene. Protonated linalool was observed as a minor product for the reactions of (C2H5OH.H2O)H+ and H3O+.(H2O)n (n = 1-3) with linalool. For all linalool reactions, a contribution of the dissociative proton transfer product at m/z 137 was found and this ion was the main product ion for the reactions with H3O+.H2O, C2H5OH2+ and (C2H5OH.H2O)H+. For the (C2H5OH.H2O)H+/linalool reaction, ligand switching with both water and ethanol has been observed. Major ligand switching channels were observed for the reactions of (C2H5OH)2H+, (C2H5OH)3H+ and H3O+.(H2O)2 with linalool. Also, for the H3O+.(H2O)3/linalool reaction, several ligand switching channels have been observed. These results are discussed in view of their applicability for the selective detection of monoterpenes and linalool with CIMS instrumentation such as SIFT-MS, PTR-MS and APCI-MS.

  16. Measurement of Organic Acids Produced By The Gas-Phase Ozonolysis of Simple Olefins Using Chemical Ionization Mass Spectrometry (CIMS) as a Function of Temperature And Humidity

    NASA Astrophysics Data System (ADS)

    Percival, C. J.; Bacak, A.; Leather, K. E.; McGillen, M. R.

    2009-12-01

    Non-methane hydrocarbons (NMHCs) form an important trace component of the atmosphere and are of particular environmental interest because of their deleterious effects on air quality, their numerous (and potentially counteractive) effects on Earth’s climate system and their sophisticated semiochemical roles in the world’s ecosystems. NMHCs are also important precursors to the formation of secondary organic aerosol (SOA) (e.g. Pandis et al., 1991; Kavouras et al., 1999). The ozonolysis reactions of olefins result in complex menageries of products, of which the acids are ubiquitous. Although the gas phase acid concentrations are small, they are thought to be key species in SOA formation as a result of their low volatility (e.g., Ma et al., 2009). Despite this, the factors that control acid formation are not well understood, especially with regards to humidity and temperature. Acid yields will be measured using the newly commissioned EXTreme RAnge (EXTRA) chamber (Leather et al., 2009). EXTRA is a 125 L stainless steel chamber, which can be temperature controlled using a commercial chest freezer unit (for T ≤ -20 °C) or a purpose built oven for T > 25 °C. The EXTRA chamber can be operated at pressures from 10-3800 Torr and at temperatures from 180-473 K. The stainless steel chamber walls have been coated with PFA to minimize wall loss of radicals. Fans, located at both ends of the cylinder, promote rapid mixing of reactants. Six sample ports are located at either end of the chamber for connection to ADS-GC-ECD, CIMS and commercial sensors such as a Thermo Electron Corporation 49i Ozone Analyzer, an Edinburgh Instruments Gascard CO2 sensor and a Trace Analytical inc. RGA3 CO analyzer. Experiments will be performed as a function of atmospherically relevant temperatures (T= 180-300 K). The field CIMS has sub ppt(v) L.O.D.s with a sub 1 Hz time response so will enable products to be quantified at very low concentrations in real time. Acid products will be detected

  17. Methods Of Testing And Assessing The Technical Condition Of Chosen Building Structures Located In The Area Of The Auschwitz-Birkenau National Museum In Oświęcim

    NASA Astrophysics Data System (ADS)

    Kańka, Stanisław; Stryszewska, Teresa; Tracz, Tomasz; Karczmarczyk, Stanisław; Paruch, Roman

    2015-12-01

    The results presented in this article consider the means of assessing the technical condition of two selected buildings, i.e. prisoner barracks number 123 and 124, located at the Auschwitz-Birkenau State Museum in Oświęcim. The work was carried out within the framework of a research project involving the development of methods for preserving, securing and strengthening the structure of buildings, along with their substrate and finishes. The aim of the project was to gain a knowledge base reflecting the actual state of the existing facilities and, on that basis, develop preservation methods and ways to protect the existing facilities against further damage, while maintaining the current character.

  18. Career Information in the mathematical sciences (CIMS)

    SciTech Connect

    Sterrett, A.

    1993-05-01

    In November of 1992, a CBMS Steering Committee for Career Information was appointed by the CBMS Council. An informal meeting of those members in attendance at the Annual Meeting of the MAA and the AMS was held in January, 1993. The first meeting was held on May 1, 2 in Washington, DC in conjunction with CBMS Council meeting. Information on existing career materials was provided to the Council at that time and Council reactions were obtained. These reactions, along with reviews of material by students, faculty members and counselors, were used by the Steering Committee to plan specific activities for the next 6--18 months. Three initiatives were given high priority: To produce and widely disseminate an annotated bibliography of career information relevant to the mathematical sciences; to remedy the lack of messages to junior high school students, parents, teachers and counselors on the importance of mathematics in finding good jobs in a technological society; and to encourage women and minorities to take all the mathematics that they can and to consider careers in which mathematics plays an important role.

  19. DUNBID, the Delft University neutron backscattering imaging detector.

    PubMed

    Bom, V R; van Eijk, C W E; Ali, M A

    2005-01-01

    In the search for low-metallic land mines, the neutron backscattering technique may be applied if the soil is sufficiently dry. An advantage of this method is the speed of detection: the scanning speed may be made comparable to that of a metal detector. A two-dimensional position sensitive detector is tested to obtain an image of the back scattered thermal neutron radiation. Results of experiments using a radionuclide neutron source are presented. The on-mine to no-mine signal ratio can be improved by the application of a window on the neutron time-of-flight. Results using a pulsed neutron generator are also presented. PMID:16029950

  20. CIMS: A FRAMEWORK FOR INFRASTRUCTURE INTERDEPENDENCY MODELING AND ANALYSIS

    SciTech Connect

    Donald D. Dudenhoeffer; May R. Permann; Milos Manic

    2006-12-01

    Today’s society relies greatly upon an array of complex national and international infrastructure networks such as transportation, utilities, telecommunication, and even financial networks. While modeling and simulation tools have provided insight into the behavior of individual infrastructure networks, a far less understood area is that of the interrelationships among multiple infrastructure networks including the potential cascading effects that may result due to these interdependencies. This paper first describes infrastructure interdependencies as well as presenting a formalization of interdependency types. Next the paper describes a modeling and simulation framework called CIMS© and the work that is being conducted at the Idaho National Laboratory (INL) to model and simulate infrastructure interdependencies and the complex behaviors that can result.

  1. 28 CFR 524.72 - CIM assignment categories.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 524.72 Judicial Administration BUREAU OF PRISONS, DEPARTMENT OF JUSTICE INMATE ADMISSION... safety of these individuals. There are two types of Witness Security cases: Department of Justice... publicity. Inmates who have received widespread publicity as a result of their criminal activity...

  2. 28 CFR 524.72 - CIM assignment categories.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 524.72 Judicial Administration BUREAU OF PRISONS, DEPARTMENT OF JUSTICE INMATE ADMISSION... safety of these individuals. There are two types of Witness Security cases: Department of Justice... publicity. Inmates who have received widespread publicity as a result of their criminal activity...

  3. 28 CFR 524.72 - CIM assignment categories.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 524.72 Judicial Administration BUREAU OF PRISONS, DEPARTMENT OF JUSTICE INMATE ADMISSION... safety of these individuals. There are two types of Witness Security cases: Department of Justice... publicity. Inmates who have received widespread publicity as a result of their criminal activity...

  4. 28 CFR 524.72 - CIM assignment categories.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 524.72 Judicial Administration BUREAU OF PRISONS, DEPARTMENT OF JUSTICE INMATE ADMISSION... safety of these individuals. There are two types of Witness Security cases: Department of Justice... publicity. Inmates who have received widespread publicity as a result of their criminal activity...

  5. 28 CFR 524.72 - CIM assignment categories.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 524.72 Judicial Administration BUREAU OF PRISONS, DEPARTMENT OF JUSTICE INMATE ADMISSION... safety of these individuals. There are two types of Witness Security cases: Department of Justice... publicity. Inmates who have received widespread publicity as a result of their criminal activity...

  6. Challenging E-Learning: An Evaluation of the STUDIO Project at TU Delft

    ERIC Educational Resources Information Center

    Kamp, L. M.; De Jong, F.; Ravesteijn, W.

    2008-01-01

    Lots of papers are being published about e-learning in engineering education. In these papers, positive experiences and aspects seem to overshadow negative ones. However, there are still some problematic sides worth studying. In order to improve its quality these should receive broad attention too. We present an explicit two-sided evaluation of…

  7. Design in Industrial Design Engineering: Teaching Design at the School of IDE at the TU Delft.

    ERIC Educational Resources Information Center

    Schierbeek, Bernd B.

    1988-01-01

    Describes an industrial design course in the Netherlands. Includes a discussion of the school history, integration of various courses, implications from the experience, design process as decision-making, basic design cycle derived from the general problem-solving process, design methodology, creativity, and conclusions. (YP)

  8. Explaining Student Success in Engineering Education at Delft University of Technology: A Literature Synthesis

    ERIC Educational Resources Information Center

    van den Bogaard, M.

    2012-01-01

    Student success is among the most widely researched areas in tertiary education. Generalisability of research in this field is problematic due to cultural and structural differences between countries, institutions and programmes where the research is done. Engineering education in the Netherlands has not been studied in depth. In this paper,…

  9. Career Information in the mathematical sciences (CIMS). Technical progress report, November 1, 1992--April 30, 1993

    SciTech Connect

    Sterrett, A.

    1993-05-01

    In November of 1992, a CBMS Steering Committee for Career Information was appointed by the CBMS Council. An informal meeting of those members in attendance at the Annual Meeting of the MAA and the AMS was held in January, 1993. The first meeting was held on May 1, 2 in Washington, DC in conjunction with CBMS Council meeting. Information on existing career materials was provided to the Council at that time and Council reactions were obtained. These reactions, along with reviews of material by students, faculty members and counselors, were used by the Steering Committee to plan specific activities for the next 6--18 months. Three initiatives were given high priority: To produce and widely disseminate an annotated bibliography of career information relevant to the mathematical sciences; to remedy the lack of messages to junior high school students, parents, teachers and counselors on the importance of mathematics in finding good jobs in a technological society; and to encourage women and minorities to take all the mathematics that they can and to consider careers in which mathematics plays an important role.

  10. Career information in the mathematical sciences (CIMS). Final report, November 1, 1992--October 31, 1995

    SciTech Connect

    Sterrett, A.

    1996-01-29

    This report documents the preparation and distribution of materials designed to aid students is assessing their interests in and prospects for a career in the mathematical sciences. Activities included the preparation of two books, two videos, a world wide web home page, and a workshop meeting on ``Math in Careers`` held at the University of California at Berkeley in January, 1995.

  11. Participation of HNO3 CIMS Instrument in the Sage III Ozone Loss and Validation Experiment (SOLVE)

    NASA Technical Reports Server (NTRS)

    Eisele, F. L.

    2001-01-01

    This project was part of a larger SOLVE project led by Paul Wennberg at California Institute of Technology. The work completed on this project included participating in the installation and preflight testing of a new chemical ionization mass spectrometer for measuring gas and particle phase nitric acid on the ER-2. The investigators subsequently participated in SOLVE where additional instrument improvements were made and a substantial data set was generated. The two Georgia Tech investigators that participated in this work (Fred Eisele and Dave Tanner) had previously been responsible for much of the design and construction of the ion source and mass spectrometer which would be used to measure HNO3 in SOLVE, with Caltech focusing on inlets, calibration, gas supplies/pumping computer control, and overall integration. Thus, a similar focus remained during the SOLVE measurements though all investigators worked on most if not all aspects of the instrument at some point in the mission. Some of the more interesting results from the study included measurements of nitric acid on what are thought to be 5-20 microns diameter individual particles which could supply a local mechanism for HNO3 removal, Nitric acid measurements on SOLVE were completed as a collaborative effort with a great deal of overlap between this project and the larger parent project led by Paul Wennberg. As such, the instrumentation used, its operation, and the resulting measurements are far more fully discussed in the attached report (appendix A) which describes the joint SOLVE nitric acid measurement effort.

  12. First quantification of calcium intake from calcium-dense dairy products in Dutch fracture patients (the Delft cohort study).

    PubMed

    van den Berg, Peter; van Haard, Paul M M; van den Bergh, Joop P W; Niesten, Dieu Donné; van der Elst, Maarten; Schweitzer, Dave H

    2014-06-01

    Recommendations for daily calcium intake from dairy products are variable and based on local consensus. To investigate whether patients with a recent fracture complied with these recommendations, we quantified the daily dairy calcium intake including milk, milk drinks, pudding, yoghurt, and cheese in a Dutch cohort of fracture patients and compared outcomes with recent data of a healthy U.S. cohort (80% Caucasians). An observational study analyzed dairy calcium intakes of 1526 female and 372 male Dutch fracture patients older than 50. On average, participants reported three dairy servings per day, independently of age, gender or population density. Median calcium intake from dairy was 790 mg/day in females and males. Based on dairy products alone, 11.3% of women and 14.2% of men complied with Dutch recommendations for calcium intake (adults ≤ 70 years: 1100 mg/day and >70 years: 1200 mg/day). After including 450 mg calcium from basic nutrition, compliance raised to 60.5% and 59.1%, respectively, compared to 53.2% in the U.S. cohort. Daily dairy calcium intake is not associated with femoral neck bone mineral density (BMD) T-scores or WHO Fracture Assessment Tool (FRAX) risk scores for major fracture or hip fracture. However, when sub analyzing the male cohort, these associations were weakly negative. The prevalence of maternal hip fracture was a factor for current fracture risks, both in women and men. While daily dairy calcium intake of Dutch fracture patients was well below the recommended dietary intake, it was comparable to intakes in a healthy U.S. cohort. This questions recommendations for adding more additional dairy products to preserve adult skeletal health, particularly when sufficient additional calcium is derived from adequate non-dairy nutrition. PMID:24959951

  13. User Education in the Online Age II. IATUL International Seminar Proceedings, (2nd, Delft, The Netherlands, July 30-August 2, 1984). Vol. 17.

    ERIC Educational Resources Information Center

    Fjallbrant, Nancy, Ed.

    1985-01-01

    Papers presented at an August 1984 international seminar on online user education include "Library Policies and Strategies in The Netherlands" (Chris J. van Wijk, The Netherlands); "Promotion and Marketing of Library Services" (Nancy Fjallbrant, Sweden); "Library Promotion by Computer" (Ian Malley, United Kingdom); "Library User Education and…

  14. A phase I study of 99mTc-hR3 (DiaCIM), a humanized immunoconjugate directed towards the epidermal growth factor receptor.

    PubMed

    Vallis, K A; Reilly, R M; Chen, P; Oza, A; Hendler, A; Cameron, R; Hershkop, M; Iznaga-Escobar, N; Ramos-Suzarte, M; Keane, P

    2002-12-01

    A phase I trial was conducted to evaluate the safety, tumour and normal tissue localization, pharmacokinetics and radiation dosimetry of Tc-hR3, a humanized monoclonal antibody directed towards the epidermal growth factor receptor, in 12 patients with recurrent or metastatic epithelial malignancies. Patients were injected intravenously with 3.0 mg or 6.0 mg (1010 MBq) of Tc-hR3. Blood and plasma concentrations of radioactivity were measured and a complete 24 h urine collection was obtained. Whole-body images were acquired up to 24 h post-injection and normal organ uptake quantified. Radiation dosimetry was estimated using MIRDose. Safety was evaluated by clinical observation, biochemical/haematological testing and by measuring immune response to Tc-hR3. There were no adverse effects, no changes in biochemical/haematological indices and no immune response to Tc-hR3. Tc-hR3 was rapidly cleared from the blood with a distribution half-life of 10.8+/-3.8 min. The volume of distribution, and clearance, were 180+/-37 ml.kg and 14+/-3 ml.kg.min, respectively. The elimination phase could not be discerned due to increasing blood radioactivity at later times. About 19-24% was excreted in the urine. Normal tissue uptake was mainly in the liver (44-50%), spleen (3-4%) and kidneys (3%). Imaging was positive in one patient with squamous cell carcinoma of the mouth and an involved cervical lymph node. The whole-body radiation dose from Tc-hR3 was 1.34+/-0.02x10 mSv.Bq. We conclude that Tc-hR3 exhibited an excellent safety profile. Future studies to determine the sensitivity and specificity of imaging with Tc-hR3 in a larger group of patients with pre-selection for epidermal growth factor receptor positivity are planned. PMID:12464779

  15. Identification of oxidized organic atmospheric species during the Southern Oxidant and Aerosol Study (SOAS) using a novel Ion Mobility Time-of-Flight Chemical Ionization Mass Spectrometer (IMS-ToF-CIMS)

    NASA Astrophysics Data System (ADS)

    Krechmer, J.; Canagaratna, M.; Kimmel, J.; Junninen, H.; Knochenmuss, R.; Cubison, M.; Massoli, P.; Stark, H.; Jayne, J. T.; Surratt, J. D.; Jimenez, J. L.; Worsnop, D. R.

    2013-12-01

    We present results from the field deployment of a novel Ion Mobility Time-of-flight Chemical Ionization Mass Spectrometer (CI-IMS-TOF) during the Southern Oxidant and Aerosol Study (SOAS). IMS-TOF is a 2-dimensional analysis method, which separates gas-phase ions by mobility prior to determination of mass-to-charge ratio by mass spectrometry. Ion mobility is a unique physical property that is determined by the collisional cross section of an ion. Because mobility depends on size and shape, the IMS measurement is able to resolve isomers and isobaric compounds. Additionally, trends in IMS-TOF data space can be used to identify relationships between ions, such as common functionality or polymeric series. During SOAS we interfaced the IMS-TOF to a nitrate ion (NO3-) chemical ionization source that enables the selective ionization of highly oxidized gas phase species (those having a high O:C ratio) through clustering with the reagent ion. Highly oxidized products of terpenes and isoprene are important secondary organic aerosol precursors (SOA) that play an uncertain but important role in particle-phase chemistry. We present several case studies of atmospheric events during SOAS that exhibited elevated concentrations of sulfuric acid and/or organics. These events exhibited a rise in particle number and provide an opportunity to examine the role that organic species may have in local atmospheric new particle formation events. We also present the results from the field deployment and subsequent laboratory studies utilizing a Potential Aerosol Mass (PAM) flow reactor as the inlet for the CI-IMS-TOF. The reactor draws in ambient air and exposes it to high concentrations of the OH radical, created by photolysis O3 in the presence of water. The highly oxidized products are then sampled directly by the CI-IMS-TOF. We performed several experiments including placing pine and deciduous plants directly in front of the reactor opening and observed large increases in the number and concentration of oxidized gas-phase species. Finally, we present preliminary results of atmospheric filter analysis using an Electrospray Ionization (ESI) source interfaced to the IMS-TOF.

  16. Credentialing complementary practitioners in a large academic cancer center.

    PubMed

    Baynham-Fletcher, Laura; Babiak-Vazquez, Adriana E; Cuello, Deanna; Frenkel, Moshe A

    2008-01-01

    One of the key obstacles to the complete integration of complementary and integrative medicine (CIM) into standard care in the United States is the lack of between-state and between-institution standards for credentialing. Also, a formal framework for the scope of CIM practitioner's practice is not available for assessing CIM integration into conventional patient care. Although many cancer centers do have some CIM programming under way, the scope of practice for CIM practitioners who may or may not fall within any formal licensing body and for non-CIM practitioners continues to vary among centers. This variation can result in inconsistent outcomes, difficulties in educating cancer patients about the role CIM can play in their cancer care, and a lack of true integration of CIM therapies into conventional treatment planning for the patient and those who care about and for them. PMID:19134449

  17. Tubular transport and metabolism of cimetidine in chicken kidneys

    SciTech Connect

    Rennick, B.; Ziemniak, J.; Smith, I.; Taylor, M.; Acara, M.

    1984-02-01

    Renal tubular transport and renal metabolism of (/sup 14/C)cimetidine (CIM) were investigated by unilateral infusion into the renal portal circulation in chickens (Sperber technique). (/sup 14/C)CIM was actively transported at a rate 88% that of simultaneously infused p-aminohippuric acid, and its transport was saturable. The following organic cations competitively inhibited the tubular transport of (/sup 14/C)CIM with decreasing potency: CIM, ranitidine, thiamine, procainamide, guanidine and choline. CIM inhibited the transport of (/sup 14/C)thiamine, (/sup 14/C)amiloride and (/sup 14/C)tetraethylammonium. During CIM infusion, two renal metabolites, CIM sulfoxide and hydroxymethylcimetidine, were found in urine. When CIM sulfoxide was infused, its transport efficiency was 32% and not saturable. CIM sulfoxide did ot inhibit the simultaneous renal tubular transport of p-aminohippuric acid or tetraethylammonium. CIM is transported by the organic cation transport system and the kidney metabolizes CIM. Transport of CIM and other cationic drugs could produce a drug interaction to alter drug excretion.

  18. Local Correlation Calculations Using Standard and Renormalized Coupled-Cluster Methods

    NASA Astrophysics Data System (ADS)

    Piecuch, Piotr; Li, Wei; Gour, Jeffrey

    2009-03-01

    Local correlation variants of the coupled-cluster (CC) theory with singles and doubles (CCSD) and CC methods with singles, doubles, and non-iterative triples, including CCSD(T) and the completely renormalized CR-CC(2,3) approach, are developed. The main idea of the resulting CIM-CCSD, CIM-CCSD(T), and CIM-CR-CC(2,3) methods is the realization of the fact that the total correlation energy of a large system can be obtained as a sum of contributions from the occupied orthonormal localized molecular orbitals and their respective occupied and unoccupied orbital domains. The CIM-CCSD, CIM-CCSD(T), and CIM-CR-CC(2,3) algorithms are characterized by the linear scaling of the total CPU time with the system size and embarrassing parallelism. By comparing the results of the canonical and CIM-CC calculations for normal alkanes and water clusters, it is demonstrated that the CIM-CCSD, CIM-CCSD(T), and CIM-CR-CC(2,3) approaches recover the corresponding canonical CC correlation energies to within 0.1 % or so, while offering savings in the computer effort by orders of magnitude. By examining the dissociation of dodecane into C11H23 and CH3 and several lowest-energy structures of the (H2O)n clusters, it is shown that the CIM-CC methods accurately reproduce the relative energetics of the corresponding canonical CC calculations.

  19. Coherent inelastic Mössbauer scattering of synchrotron radiation (abstract)

    NASA Astrophysics Data System (ADS)

    Belyakov, V. A.

    2002-03-01

    Recent success of coherent elastic [Nuclear Resonant Scattering of Synchrotron Radiation, Part A edited by E. Gerdau and H. de Woard (Baltzer Science, 2000), Hyperfine Interact. 123/124, Chap. 4] and incoherent inelastic (Hyperfine Interact. 123/124, Chap. 5) Mössbauer scattering of synchrotron radiation (SR) in investigations of very delicate properties of the condensed matter also makes it urgent to perform experiments on coherent inelastic Mössbauer scattering (CIMS) of synchrotron radiation (the common meaning of the term CIMS is coherent inelastic Mössbauer scattering accompanied by creation or annihilation of phonons in the crystal lattice, i.e., by very low energy losses of SR quanta). However up to now there were no publications on experimental observation of CIMS so there is a need in theoretical investigations to reveal the most favorable conditions for CIMS observation. The theory of CIMS is presented below and applied to specific processes of CIMS such as forward scattering, scattering at grazing incidence angles, and scattering via a cascade of Mössbauer transitions. It is shown that the phase matching (between the incident and scattered beam) is very important for the angular and frequency distribution in CIMS and processes where phase matching can be reached, which the best candidates for CIMS experimental investigations. The performed analysis shows that because of the phase matching demands the forward CIMS is suppressed significantly in comparison with the coherent elastic Mössbauer scattering [V. A. Belyakov, JETP Lett. 67, 8 (1998)] and more favorable for observation is CIMS at a nonzero scattering angle. Some examples of CIMS specific geometries are discussed. In particular, it is shown that for the grazing CIMS at isotope interface (a plane interface between regions with different abundance of the Mössbauer isotope) there is enhancement of CIMS at the critical angle of total reflection and suppression of CIMS at angles below the critical

  20. The freedom to explore: examining the influence of independent mobility on weekday, weekend and after-school physical activity behaviour in children living in urban and inner-suburban neighbourhoods of varying socioeconomic status

    PubMed Central

    2014-01-01

    Background Children’s independent mobility (CIM) is critical to healthy development in childhood. The physical layout and social characteristics of neighbourhoods can impact opportunities for CIM. While global evidence is mounting on CIM, to the authors’ knowledge, Canadian data on CIM and related health outcomes (i.e., physical activity (PA) behaviour) are missing. The purpose of this study was to examine if CIM is related to multiple characteristics of accelerometry-measured PA behaviour (total PA, light PA, moderate-to-vigorous PA, time spent sedentary) and whether associations between CIM and PA behaviour systematically vary by place of residence, stratifying by gender and type of day/period (weekdays, after-school, weekend). Methods Participants were recruited through Project BEAT (Built Environment and Active Transport; http://www.beat.utoronto.ca). Children (n = 856) were stratified into four neighbourhood classifications based on the period of neighbourhood development (urban built environment (BE) (old BE) versus inner-suburban BE (new BE)) and socioeconomic status (SES; low SES and high SES). Physical activity was measured via accelerometry (ActiGraph GT1M). CIM was assessed via parental report and two categories were created (low CIM, n = 332; high CIM, n = 524). A series of two-factor ANOVAs were used to determine gender-specific differences in PA for weekdays, weekend days and the after-school period, according to level of CIM, across four neighbourhood classifications. Results Children who were granted at least some independent mobility (high CIM) had more positive PA profiles across the school week, during the after-school period, and over the weekend; they were also less sedentary. The influence of CIM on PA behaviour was particularly salient during the after-school period. Associations of CIM with PA varied by gender, and also by neighbourhood classification. CIM seemed to matter more in urban neighbourhoods for boys and suburban

  1. Complementary and integrative medicine for breast cancer patients - Evidence based practical recommendations.

    PubMed

    Witt, C M; Cardoso, M J

    2016-08-01

    On average half of the breast cancer patients' population uses complementary and integrative medicine (CIM) therapies and many of them would like to receive information on CIM from their conventional treatment team. However, often they don't feel comfortable in discussing CIM related questions, with their conventional treatment team, because they think they don't have enough expertise and available time to deal with this topic. Furthermore, information on the evidence of CIM is not easily accessible and the available information is not always reliable. The purpose of the current paper is to provide: 1) an overview about the CIM interventions that have shown positive effects in breast cancer patients and might be useful in supportive cancer care, 2) practical guidance on how to choose and find a qualified referral to a CIM treatment: 3) recommendations on how these interventions could be integrated into Breast Cancer Centers and which factors should be taken into consideration in this setting. This paper takes available CIM practice guidelines for cancer patients and previous research on CIM implementation models into account. There are CIM interventions that have shown a potential to reduce symptoms of cancer or cancer treatments in breast cancer patients and the vast majority uses a non-pharmacological approach and have a good potential for implementation. Nevertheless, further and more rigorous research is still needed. PMID:27203402

  2. An exploratory typology of provider responses that encourage and discourage conversation about complementary and integrative medicine during routine oncology visits

    PubMed Central

    Koenig, Christopher J.; Ho, Evelyn Y.; Trupin, Laura; Dohan, Daniel

    2015-01-01

    OBJECTIVE To characterize how providers respond to patient mentions of complementary and integrative medicine (CIM) during routine oncology visits. METHODS Ethnographic methods were used over a two and a half year period with 82 advanced cancer patients and their providers across four oncology clinics. Participant observation fieldnotes were analyzed using Discourse Analysis. RESULTS CIM was mentioned in 78/229 (34%) of the total observed visits. Patients initiated talk about CIM (76%) more than providers (24%). Patients mentioning CIM may indicate a preference for or interest in non-pharmacological adjunctive treatment options. Providers’ responses inhibited further talk in 44% of observations and promoted talk in 56% of observations. CONCLUSION How providers respond may indicate their willingness to discuss a range of treatment options and to collaboratively engage in treatment decision-making. Provider responses that inhibited CIM conversation passed on the opportunity to discuss patient interests, and responses that promoted further conversation helped counsel patients about appropriate CIM use. Promoting discussion did not require additional time or extensive knowledge about CIM. PRACTICE IMPLICATIONS Providers can facilitate high quality communication without endorsing CIM to help patients make treatment decisions and to evaluate CIM appropriateness and safety in ways that are responsive to patient preferences and values. An exploratory typology of provider responses that encourage and discourage conversation about complementary and integrative medicine during routine oncology visits PMID:25865412

  3. Local Correlation Calculations Using Standard and Renormalized Coupled-Cluster Methods

    NASA Astrophysics Data System (ADS)

    Li, Wei; Piecuch, Piotr; Gour, Jeffrey R.

    2009-03-01

    This article discusses our recent effort toward the extension of the linear scaling local correlation approach, termed 'cluster-in-molecule' and abbreviated as CIM [S. Li, J. Ma, and Y. Jiang, J. Comput. Chem. 23, 237 (2002); S. Li, J. Shen, W. Li, and Y. Jiang, J. Chem. Phys. 125, 074109 (2006)], to the coupled-cluster (CC) theory with singles and doubles (CCSD) and CC methods with singles, doubles, and non-iterative triples, including the standard CCSD(T) approach and the completely renormalized CR-CC(2,3) scheme [P. Piecuch and M. Włoch, J. Chem. Phys. 123, 224105 (2005); P. Piecuch, M. Włoch, J. R. Gour, and A. Kinal, Chem. Phys. Lett. 418, 467 (2006)]. As in the earlier CIM work that dealt with the second-order many-body perturbation theory and CC doubles approach, the main idea of the CIM-CCSD, CIM-CCSD(T), and CIM-CR-CC(2,3) methods is the realization of the fact that the total correlation energy of a large system can be obtained as a sum of contributions from the occupied orthonormal localized molecular orbitals and their respective occupied and unoccupied orbital domains. The CIM-CCSD, CIM-CCSD(T), and CIM-CR-CC(2,3) methods pursued in this work are characterized by high computational efficiency in both the CIM and CC parts, enabling calculations for much larger systems than previously possible. This is achieved by combining the natural linear scaling and embarrassing parallelism of the CIM ansatz with the vectorized CC codes that rely on recursively generated intermediates and fast matrix multiplication routines. By comparing the results of the canonical and CIM-CC calculations for normal alkanes and water clusters, it is demonstrated that the CIM-CCSD, CIM-CCSD(T), and CIM-CR-CC(2,3) approaches recover the corresponding canonical CC correlation energies to within 0.1% or so, while offering linear scaling of the computer costs with the system size and savings in the computer effort by orders of magnitude. By examining the dissociation of dodecane into C

  4. Space charge limited release of charged inverse micelles in non-polar liquids.

    PubMed

    Prasad, Manoj; Strubbe, Filip; Beunis, Filip; Neyts, Kristiaan

    2016-07-28

    Charged inverse micelles (CIMs) generated during a continuous polarizing voltage between electrodes in the model system of polyisobutylene succinimide in dodecane do not populate a diffuse double layer like CIMs present in equilibrium (regular CIMs), but instead end up in interface layers. When the applied voltage is reversed abruptly after a continuous polarizing voltage step, two peaks are observed in the transient current. The first peak is due to the release of regular CIMs from the diffuse double layers formed during the polarizing voltage step, which is understood on the basis of the Poisson-Nernst-Planck equations. The second peak is due to the release of a small fraction of generated negative CIMs from the interface layer. A model based on space charge limited release of the generated negative CIMs from the interface layer is presented and the results of the model are compared with several types of measurements. For the situation in which the bulk is deprived of regular CIMs and neutral inverse micelles, the results of the model are in agreement with the experimental results. However, for the situation in which regular CIMs and neutral inverse micelles are present, the model shows discrepancies with the experiment for high voltages and high charge contents. These discrepancies are attributed to electrohydrodynamic flow caused by local variations in the electric field at the vicinity of the electrodes, which occur during the reversal voltage. Also the long term decrease of the amount of released generated CIMs is studied and it is found that the presence of regular CIMs and neutral inverse micelles speeds up the decrease. This study provides a deeper insight in the electrodynamics of CIMs and is relevant for various applications in non-polar liquids. PMID:27374418

  5. Machine Tool Advanced Skills Technology (MAST). Common Ground: Toward a Standards-Based Training System for the U.S. Machine Tool and Metal Related Industries. Volume 14: Automated Equipment Technician (CIM), of a 15-Volume Set of Skill Standards and Curriculum Training Materials for the Precision Manufacturing Industry.

    ERIC Educational Resources Information Center

    Texas State Technical Coll., Waco.

    This document is intended to help education and training institutions deliver the Machine Tool Advanced Skills Technology (MAST) curriculum to a variety of individuals and organizations. MAST consists of industry-specific skill standards and model curricula for 15 occupational specialty areas within the U.S. machine tool and metals-related…

  6. Identification of 9(E),11(E)-18:2 fatty acid methyl ester at trace level in thermal stressed olive oils by GC coupled to acetonitrile CI-MS and CI-MS/MS, a possible marker for adulteration by addition of deodorized olive oil.

    PubMed

    Saba, Alessandro; Mazzini, Francesco; Raffaelli, Andrea; Mattei, Alissa; Salvadori, Piero

    2005-06-15

    The olive oil market is suffering from sophisticated illegal treatments. One common adulteration process consists of the addition to virgin olive oil of lower quality oils, such as "lampante" oil, an inexpensive oil and with some organoleptic defects, which is then submitted to thermal deodorization under vacuum processes for removal of the undesired flavor components. Such a blending may not have a huge influence on the chemical composition and may not significantly affect the parameters usually checked as quality indicators, although the organoleptic properties may change. As a consequence, a major effort is being devoted to find reliable markers able to unmask such adulterations. We report here the complete characterization of a compound, detected at trace levels exclusively in thermal stressed oils, which could be a candidate marker for adulteration. The investigation, carried out by GC-MS and GC-MS/MS, provided its complete structure, including the stereochemistry, shown to be a 9(E),11(E)-18:2 fatty acid methyl ester. Experimental data also confirmed the influence of both temperature and heating time on formation and concentration of this compound. PMID:15941328

  7. 76 FR 50315 - Notice of Fiscal Year 2012 Safety Grants and Solicitation for Applications

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-08-12

    ... Registration Information Systems Management (PRISM) grants; Safety Data Improvement Program (SaDIP) grants; and....gov , 202-366-0133. SaDIP Grants--Cim Weiss, cim.weiss@dot.gov , 202-366-0275. PRISM Grants--Julie... match. SaDIP grant applications must be submitted electronically through grants.gov . PRISM...

  8. 75 FR 40023 - Notice of Fiscal Year 2011 Safety Grants and Solicitation for Applications

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-07-13

    ... published in the Federal Register on January 17, 2008 (73 FR 3316), or you may visit http://edocket.access...) Modernization grants; Performance and Registration Information Systems Management (PRISM) grants; Safety Data...-3030 SaDIP Grants--Cim Weiss, cim.weiss@dot.gov , 202-366-0275 PRISM Grants--Tom Lawler,...

  9. Computer Integrated Manufacturing Programs in Higher Education.

    ERIC Educational Resources Information Center

    International Business Machines Corp., Milford, CT. Academic Information Systems.

    This publication focuses on computer integrated manufacturing (CIM) programs at several higher education institutions which teach the use of computing in manufacturing. The document describes programs at the following institutions: University of Alabama (where researchers are investigating CIM techniques with a key focus on transferring their…

  10. 28 CFR 524.75 - Periodic review.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 28 Judicial Administration 2 2010-07-01 2010-07-01 false Periodic review. 524.75 Section 524.75... TRANSFER CLASSIFICATION OF INMATES Central Inmate Monitoring (CIM) System § 524.75 Periodic review. The Warden shall ensure that the status of an inmate's CIM assignment is considered at each program...

  11. 28 CFR 524.75 - Periodic review.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 28 Judicial Administration 2 2013-07-01 2013-07-01 false Periodic review. 524.75 Section 524.75... TRANSFER CLASSIFICATION OF INMATES Central Inmate Monitoring (CIM) System § 524.75 Periodic review. The Warden shall ensure that the status of an inmate's CIM assignment is considered at each program...

  12. Probing aerosol formation by comprehensive measurements of gas phase oxidation products

    NASA Astrophysics Data System (ADS)

    Ehn, Mikael; Kleist, Einhard; Junninen, Heikki; Sipilä, Mikko; Petäjä, Tuukka; Pullinen, Iida; Springer, Monika; Andres, Stefanie; Rissanen, Matti; Kontkanen, Jenni; Schobesberger, Siegfried; Rubach, Florian; Tillman, Ralf; Lee, Ben H.; Lopez-Hilfiker, Felipe; Kerminen, Veli-Matti; Kulmala, Markku; Worsnop, Douglas R.; Thornton, Joel; Wildt, Jürgen; Mentel, Thomas F.

    2013-05-01

    A comprehensive suite of chemical ionization mass spectrometers (CIMS) were deployed for chamber studies of monoterpene oxidation. The CIMS instruments were able to detect several different groups of compounds ranging from volatile to practically non-volatile. The compound groups showed very different behavior and correlations with aerosol number and mass. Results suggest that major gas phase contributors are not considered in current models.

  13. 28 CFR 524.73 - Classification procedures.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... Designee—reviews CIM classification decisions for all separation assignments. (d) Removal. (1) Because... CIM assignment. Staff shall notify the inmate of the decision and document any change in the inmate's... Classification procedures. (a) Initial assignment. Except as provided for in paragraphs (a) (1) through (4)...

  14. Different Types of Charged-Inverse Micelles in Nonpolar Media.

    PubMed

    Prasad, Manoj; Strubbe, Filip; Beunis, Filip; Neyts, Kristiaan

    2016-06-14

    Over the last few years, the electrodynamics of charged inverse micelles (CIMs) in nonpolar liquids and the generation mechanism and properties of newly generated CIMs have been studied extensively for the model system of polyisobutylene succinimide in dodecane. However, the newly generated CIMs, which accumulate at the electrodes when a continuous voltage is applied, behave differently compared to the regular CIMs present in equilibrium in the absence of a field. In this work, we use transient current measurements to investigate the behavior of the newly generated CIMs when the field is reduced to zero or reversed. We demonstrate that the newly generated CIMs do not participate in the diffuse double layer near the electrode formed by the regular CIMs but form an interface layer at the electrode surface. A fraction of the newly generated negative CIMs can be released from this interface layer when the field there becomes zero. The findings of this study provide a better understanding of fundamental processes in nonpolar liquids and are relevant for applications such as electronic ink displays and liquid toner printing. PMID:27231768

  15. Bacillus subtilis YxkJ is a secondary transporter of the 2-hydroxycarboxylate transporter family that transports L-malate and citrate.

    PubMed

    Krom, B P; Aardema, R; Lolkema, J S

    2001-10-01

    The genome of Bacillus subtilis contains two genes that code for membrane proteins that belong to the 2-hydroxycarboxylate transporter family. Here we report the functional characterization of one of the two, yxkJ, which codes for a transporter protein named CimHbs. The gene was cloned and expressed in Escherichia coli and complemented the citrate-negative phenotype of wild-type E. coli and the malate-negative phenotype of the E. coli strain JRG4008, which is defective in malate uptake. Subsequent uptake studies in whole cells expressing CimHbs clearly demonstrated the citrate and malate transport activity of the protein. Immunoblot analysis showed that CimHbs is a 48-kDa protein that is well expressed in E. coli. Studies with right-side-out membrane vesicles demonstrated that CimHbs is an electroneutral proton-solute symporter. No indications were found for the involvement of Na(+) ions in the transport process. Inhibition of the uptake catalyzed by CimHbs by divalent metal ions, together with the lack of effect on transport by the chelator EDTA, showed that CimHbs translocates the free citrate and malate anions. Among a large set of substrates tested, only malate, citramalate, and citrate competitively inhibited citrate transport catalyzed by CimHbs. The transporter is strictly stereoselective, recognizing only the S enantiomers of malate and citramalate. Remarkably, though citramalate binds to the transporter, it is not translocated. PMID:11566984

  16. Evaluating the Economics of Complementary and Integrative Medicine

    PubMed Central

    2013-01-01

    Healthcare in the United States is expensive and becoming more so every year. Policy and decision makers increasingly need information on costs, as well as effectiveness and safety, in order to formulate health-care strategies that are both clinically effective and financially responsible. Many people believe the benefits of complementary and integrative medicine (CIM) exceed its costs. Surveys have shown that a substantial portion of the US population uses CIM and pays directly for that use.1–4 The most recent estimates show that total US out-of-pocket expenditures for CIM were $34 billion—11% of all US out-of-pocket healthcare expenditures.1 However, if CIM is to be considered in broader healthcare strategies, its economic impact must be determined. Theoretically, CIM seems a good candidate for cost-effectiveness, and even cost savings, because it avoids high technology, offers inexpensive and noninvasive remedies, encourages healthy lifestyle change, and focuses on the whole person, all of which may improve health beyond the targeted disease or condition. However, to many in the conventional health-care system, CIM is seen only as an “add on” expense. What must be demonstrated via economic evaluation are the healthcare costs that can be avoided through the use of CIM. CIM offers the potential for several avenues of cost reduction. The first is as a direct replacement for the usual conventional therapy for a condition. The second is in terms of lower future healthcare utilization both in general (through treating the whole person) and for the targeted disease or condition. A third avenue to cost reduction is through reducing productivity loss for employers. A reduction in costs to employers does not directly reduce healthcare costs (unless the employer is itself a health-care facility); however, both are costs to society. Productivity losses can be reduced through improved employee health, and potentially through the improved employee well-being and

  17. Synergistic and additive effects of cimetidine and levamisole on cellular immune responses to hepatitis B virus DNA vaccine in mice.

    PubMed

    Niu, X; Yang, Y; Wang, J

    2013-02-01

    We and others have previously shown that both cimetidine (CIM) and levamisole (LMS) enhance humoral and cellular responses to DNA vaccines via different mechanisms. In this study, we investigated the synergistic and additive effects of CIM and LMS on the potency of antigen-specific immunities generated by a DNA vaccine encoding the hepatitis B surface antigen (HBsAg, pVax-S2). Compared with CIM or LMS alone, the combination of CIM and LMS elicited a robust HBsAg-specific cellular response that was characterized by higher IgG2a, but did not further increase HBsAg-specific antibody IgG and IgG1 production. Consistent with these results, the combination of CIM and LMS produced the highest level of IL-2 and IFN-γ in antigen-specific CD4(+) T cells, whereas the combination of CIM and LMS did not further increase IL-4 production. Significantly, a robust HBsAg-specific cytotoxic response was also observed in the animals immunized with pVax-S2 in the presence of the combination of CIM and LMS. Further mechanistic studies demonstrated that the combination of CIM and LMS promoted dendritic cell (DC) activation and blocked anti-inflammatory cytokine IL-10 and TGF-β production in CD4(+) CD25(+) T cells. These findings suggest that CIM and LMS have the synergistic and additive ability to enhance cellular response to hepatitis B virus DNA vaccine, which may be mediated by DC activation and inhibition of anti-inflammatory cytokine expression. Thus, the combination of cimetidine and levamisole may be useful as an effective adjuvant in DNA vaccinations for chronic hepatitis B virus infection. PMID:23298196

  18. Relative risk of dysplasia for patients with intestinal metaplasia in the distal oesophagus and in the gastric cardia

    PubMed Central

    Sharma, P; Weston, A; Morales, T; Topalovski, M; Mayo, M; Sampliner, R

    2000-01-01

    BACKGROUND—Biopsy specimens obtained from the gastro-oesophageal junction can reveal intestinal metaplasia in patients presenting for routine upper endoscopy. The site of biopsy may play a critical role in determining the dysplasia risk of a patient.
AIMS—To evaluate prospectively the dysplasia risk in patients with intestinal metaplasia of the distal oesophagus or within the gastric cardia.
METHODS—Patients with short segment Barrett's oesophagus (SSBO) and cardia intestinal metaplasia (CIM) were followed prospectively.
RESULTS—177 patients with SSBO were identified (mean age 62 years, range 38-82; 91% whites). Twenty prevalence cases of dysplasia in SSBO were detected: 17 low grade dysplasia (LGD), three high grade dysplasia (HGD). Seventy six patients with CIM were identified (mean age 67 years, range 37-81; 81% whites). A single prevalence case of LGD in CIM was detected. During follow up of 78 SSBO and 34 CIM patients, dysplasia developed in nine (seven LGD, two HGD) with SSBO and in one (LGD) with CIM. There were significant differences between the two groups with respect to age, ethnicity, dysplasia prevalence, and incidence. Time to dysplasia progression was significantly longer in CIM compared with SSBO patients. Of the five patients with SSBO and HGD, one developed adenocarcinoma of the oesophagus on follow up. No HGD or cancers have been detected over this time period in CIM patients.
CONCLUSIONS—The dysplasia risk is significantly greater in SSBO than in CIM patients, indicating two potentially different clinical processes. Future studies should separate SSBO from CIM in order to enhance the understanding of the pathophysiology and malignant potential of each entity.


Keywords: high grade dysplasia; low grade dysplasia; metaplasia; Barrett's oesophagus; gastro-oesophageal reflux disease PMID:10601047

  19. Comparison of negative-ion proton-transfer with iodide ion chemical ionization mass spectrometry for quantification of isocyanic acid in ambient air

    NASA Astrophysics Data System (ADS)

    Woodward-Massey, Robert; Taha, Youssef M.; Moussa, Samar G.; Osthoff, Hans D.

    2014-12-01

    Isocyanic acid (HNCO) is a trace gas pollutant of potential importance to human health whose measurement has recently become possible through the development of negative-ion proton-transfer chemical ionization mass spectrometry (NI-PT-CIMS) with acetate reagent ion. In this manuscript, an alternative ionization and detection scheme, in which HNCO is quantified by iodide CIMS (iCIMS) as a cluster ion at m/z 170, is described. The sensitivity was inversely proportional to water vapor concentration but could be made independent of humidity changes in the sampled air by humidifying the ion-molecule reaction (IMR) region of the CIMS. The performance of the two ionization schemes was compared and contrasted using ambient air measurements of HNCO mixing ratios in Calgary, AB, Canada, by NI-PT-CIMS with acetate reagent ion from Dec 16 to 20, 2013, and by the same CIMS operated in iCIMS mode from Feb 3 to 7, 2014. The iCIMS exhibited a greater signal-to-noise ratio than the NI-PT-CIMS, not because of its sensitivity, which was lower (˜0.083 normalized counts per second (NCPS) per parts-per-trillion by volume (pptv) compared to ˜9.7 NCPS pptv-1), but because of a much lower and more stable background (3 ± 4 compared to a range of ˜2 × 103 to ˜6 × 103 NCPS). For the Feb 2014 data set, the HNCO mixing ratios in Calgary air ranged from <12 to 94 pptv (median 34 pptv), were marginally higher at night than during day, and correlated with nitrogen oxide (NOx = NO + NO2) mixing ratios and submicron particle volume. The ratios of HNCO to NOx observed are within the range of emission ratios reported for gasoline-powered motor vehicles.

  20. Information Interaction Study for DER and DMS Interoperability

    NASA Astrophysics Data System (ADS)

    Liu, Haitao; Lu, Yiming; Lv, Guangxian; Liu, Peng; Chen, Yu; Zhang, Xinhui

    The Common Information Model (CIM) is an abstract data model that can be used to represent the major objects in Distribution Management System (DMS) applications. Because the Common Information Model (CIM) doesn't modeling the Distributed Energy Resources (DERs), it can't meet the requirements of DER operation and management for Distribution Management System (DMS) advanced applications. Modeling of DER were studied based on a system point of view, the article initially proposed a CIM extended information model. By analysis the basic structure of the message interaction between DMS and DER, a bidirectional messaging mapping method based on data exchange was proposed.

  1. Correlation ion mobility spectroscopy

    DOEpatents

    Pfeifer, Kent B.; Rohde, Steven B.

    2008-08-26

    Correlation ion mobility spectrometry (CIMS) uses gating modulation and correlation signal processing to improve IMS instrument performance. Closely spaced ion peaks can be resolved by adding discriminating codes to the gate and matched filtering for the received ion current signal, thereby improving sensitivity and resolution of an ion mobility spectrometer. CIMS can be used to improve the signal-to-noise ratio even for transient chemical samples. CIMS is especially advantageous for small geometry IMS drift tubes that can otherwise have poor resolution due to their small size.

  2. Negative ion mass spectrometry and the detection of carbonyls and HCN from clover

    NASA Astrophysics Data System (ADS)

    Custer, Thomas G.; Kato, Shuji; Fall, Ray; Bierbaum, Veronica M.

    2000-12-01

    We have demonstrated that negative ion-chemical ionization mass spectrometry (NI-CIMS) can be used to distinguish several isomeric volatile organic compounds (VOCs) that are emitted from wounded plants. Reaction chemistry with HO-, hydrogen/deuterium exchange patterns, and collision-induced dissociation spectra allow identification of the isomers. Laboratory studies of emissions from wounded clover using NI-CIMS show several previously detected VOCs, but also clearly demonstrate the emission of HCN. This compound is presumably formed by the decomposition of cyanogenic glycosides which also form aldehyde and ketone byproducts. These results suggest that NI-CIMS may be a valuable tool for investigating VOCs and HCN release from vegetation.

  3. Development and characterization of methacrylate-based hydrazide monoliths for oriented immobilization of antibodies.

    PubMed

    Brne, P; Lim, Y-P; Podgornik, A; Barut, M; Pihlar, B; Strancar, A

    2009-03-27

    Convective interaction media (CIM; BIA Separations) monoliths are attractive stationary phases for use in affinity chromatography because they enable fast affinity binding, which is a consequence of convectively enhanced mass transport. This work focuses on the development of novel CIM hydrazide (HZ) monoliths for the oriented immobilization of antibodies. Adipic acid dihydrazide (AADH) was covalently bound to CIM epoxy monoliths to gain hydrazide groups on the monolith surface. Two different antibodies were afterwards immobilized to hydrazide functionalized monolithic columns and prepared columns were tested for their selectivity. One column was further tested for the dynamic binding capacity. PMID:19203754

  4. Interlock recovery during the drying, calcination and vitrification phase of Am/Cm processing

    SciTech Connect

    Snyder, T.K.

    2000-01-20

    This document summarizes the results of five CIM5 [5-inch Cylindrical Induction Melter] runs designed to demonstrate power interlock recovery methods during the drying, calcination and vitrification phases of the Am/Cm melter cycle.

  5. A pterodactyloid pterosaur from the Upper Cretaceous Lapurr sandstone, West Turkana, Kenya.

    PubMed

    O'Connor, Patrick M; Sertich, Joseph J W; Manthi, Fredrick K

    2011-03-01

    An isolated pterosaurian caudal cervical (~ postcervical) vertebra was recovered from the Upper Cretaceous Lapurr sandstone of West Turkana, northwestern Kenya. The vertebral centrum is short, wide, and dorsoventrally compressed. Although the specimen is lightly built similar to most pterosaurs, it is here referred to Pterodactyloidea and tentatively to the Azhdarchidae in that it lacks pneumatic features on both the centrum and neural arch. This represents one of the few pterosaurs recovered from the entirety of Afro-Arabia, the first pterosaur recovered from the Cretaceous of East Africa, and, significantly, a specimen that was recovered from fluvial deposits rather than the near-shore marine setting typical of most pterosaur discoveries. PMID:21437388

  6. (R)-citramalate synthase in methanogenic archaea.

    PubMed

    Howell, D M; Xu, H; White, R H

    1999-01-01

    The Methanococcus jannaschii gene MJ1392 was cloned, and its protein product was hyperexpressed in Escherichia coli. The resulting protein was purified and shown to catalyze the condensation of pyruvate and acetyl coenzyme A, with the formation of (R)-citramalate. Thus, this gene (cimA) encodes an (R)-citramalate synthase (CimA). This is the first identification of this enzyme, which is likely involved in the biosynthesis of isoleucine. PMID:9864346

  7. All-solid-state reference electrodes based on colloid-imprinted mesoporous carbon and their application in disposable paper-based potentiometric sensing devices.

    PubMed

    Hu, Jinbo; Ho, Kieu T; Zou, Xu U; Smyrl, William H; Stein, Andreas; Bühlmann, Philippe

    2015-03-01

    Reference electrodes are used in almost every electroanalytical measurement. Here, all-solid-state reference electrodes are described that employ colloid-imprinted mesoporous (CIM) carbon as solid contact and a poly(vinyl chloride) reference membrane to contact the sample. Such a reference membrane is doped with a moderately hydrophilic ionic liquid and a hydrophobic redox couple, leading to well-defined constant potentials at the interfaces of this membrane to the sample and to the solid contact, respectively. Due to the intrinsic properties of CIM carbon, reference electrodes with a CIM carbon solid contact exhibit excellent resistance to common interfering agents such as light and O2, with outstanding potential stability in continuous potentiometric measurements. The potential drift of CIM carbon-based reference electrodes without redox couple is as low as 1.7 μV/h over 110 h, making them the most stable all-solid-state reference electrodes reported so far. To demonstrate the compatibility of CIM carbon-based reference electrodes with miniaturized potentiometric systems, these reference electrodes were integrated into paper-based potentiometric sensing devices, successfully replacing the conventional reference electrode with its reference electrolyte solution. As a proof of concept, disposable paper-based Cl(-) sensing devices that contain stencil-printed Ag/AgCl-based Cl(-) selective electrodes and CIM carbon-based reference electrodes were constructed. These sensing devices are inexpensive, easy to use, and offer highly reproducible Cl(-) measurements with sample volumes as low as 10 μL. PMID:25630744

  8. Evaluation of COMPASS ionospheric model in GNSS positioning

    NASA Astrophysics Data System (ADS)

    Wu, Xiaoli; Hu, Xiaogong; Wang, Gang; Zhong, Huijuan; Tang, Chengpan

    2013-03-01

    As important products of GNSS navigation message, ionospheric delay model parameters are broadcasted for single-frequency users to improve their positioning accuracy. GPS provides daily Klobuchar ionospheric model parameters based on geomagnetic reference frame, while the regional satellite navigation system of China's COMPASS broadcasts an eight-parameter ionospheric model, COMPASS Ionospheric Model(CIM), which was generated by processing data from continuous monitoring stations, with updating the parameters every 2 h. To evaluate its performance, CIM predictions are compared to ionospheric delay measurements, along with GPS positioning accuracy comparisons. Real observed data analysis indicates that CIM provides higher correction precision in middle-latitude regions, but relatively lower correction precision for low-latitude regions where the ionosphere has much higher variability. CIM errors for some users show a common bias for in-coming COMPASS signals from different satellites, and hence ionospheric model errors are somehow translated into the receivers' clock error estimation. In addition, the CIM from the China regional monitoring network are further evaluated for global ionospheric corrections. Results show that in the Northern Hemisphere areas including Asia, Europe and North America, the three-dimensional positioning accuracy using the CIM for ionospheric delay corrections is improved by 7.8%-35.3% when compared to GPS single-frequency positioning ionospheric delay corrections using the Klobuchar model. However, the positioning accuracy in the Southern Hemisphere is degraded due apparently to the lack of monitoring stations there.

  9. Relationship between pharyngitis and peri-odontoid pannus: A new etiology for some Chiari I malformations?

    PubMed

    Tubbs, R Shane; Griessenauer, Christoph J; Hendrix, Philipp; Oakes, Peter; Loukas, Marios; Chern, Joshua J; Rozzelle, Curtis J; Oakes, W Jerry

    2015-07-01

    The pathophysiology underlying Chiari I malformations (CIMs) provides room for debate with several theories attempting to address this issue. We retrospectively reviewed many of our past patients with pediatric CIMs (specifically, those with peri-odontoid pannus), and present a hypothesis for the development of the malformation in some of said patients. Our experience with the pediatric CIM has shown that almost 1 in 20 patients who present with symptoms is found to have a peri-odontoid pannus. These masses ranged in size from 4 to 11 mm in diameter. Forty percent had a history of clinically significant pharyngitis or pharyngeal abscess. Pannus formation around the dens (odontoid) resulted in ventral compression of the craniocervical junction in each of these patients. Highlighting the hypermobility that causes such lesions, following fusion, the pannus and symptoms in several patients were diminished. Impairment of normal cerebrospinal fluid circulation out of the fourth ventricle and across the craniocervical junction appears to be a plausible endpoint in this discussion and a suitable explanation for some patients with CIM. Still, the mechanisms by which cerebrospinal fluid circulation is compromised may be variable and are not well understood. This is the first study dedicated to the evaluation of pannus formation in the CIM population. We hypothesize that pharyngeal inflammatory conditions contribute to the formation and progression of hindbrain herniation in a small subset of patients with CIMs. PMID:25974330

  10. Combined fragment molecular orbital cluster in molecule approach to massively parallel electron correlation calculations for large systems.

    PubMed

    Findlater, Alexander D; Zahariev, Federico; Gordon, Mark S

    2015-04-16

    The local correlation "cluster-in-molecule" (CIM) method is combined with the fragment molecular orbital (FMO) method, providing a flexible, massively parallel, and near-linear scaling approach to the calculation of electron correlation energies for large molecular systems. Although the computational scaling of the CIM algorithm is already formally linear, previous knowledge of the Hartree-Fock (HF) reference wave function and subsequent localized orbitals is required; therefore, extending the CIM method to arbitrarily large systems requires the aid of low-scaling/linear-scaling approaches to HF and orbital localization. Through fragmentation, the combined FMO-CIM method linearizes the scaling, with respect to system size, of the HF reference and orbital localization calculations, achieving near-linear scaling at both the reference and electron correlation levels. For the 20-residue alanine α helix, the preliminary implementation of the FMO-CIM method captures 99.6% of the MP2 correlation energy, requiring 21% of the MP2 wall time. The new method is also applied to solvated adamantine to illustrate the multilevel capability of the FMO-CIM method. PMID:25794346

  11. Are complementary therapies and integrative care cost-effective? A systematic review of economic evaluations

    PubMed Central

    Herman, Patricia M; Poindexter, Beth L; Witt, Claudia M; Eisenberg, David M

    2012-01-01

    Objective A comprehensive systematic review of economic evaluations of complementary and integrative medicine (CIM) to establish the value of these therapies to health reform efforts. Data sources PubMed, CINAHL, AMED, PsychInfo, Web of Science and EMBASE were searched from inception through 2010. In addition, bibliographies of found articles and reviews were searched, and key researchers were contacted. Eligibility criteria for selecting studies Studies of CIM were identified using criteria based on those of the Cochrane complementary and alternative medicine group. All studies of CIM reporting economic outcomes were included. Study appraisal methods All recent (and likely most cost-relevant) full economic evaluations published 2001–2010 were subjected to several measures of quality. Detailed results of higher-quality studies are reported. Results A total of 338 economic evaluations of CIM were identified, of which 204, covering a wide variety of CIM for different populations, were published 2001–2010. A total of 114 of these were full economic evaluations. And 90% of these articles covered studies of single CIM therapies and only one compared usual care to usual care plus access to multiple licensed CIM practitioners. Of the recent full evaluations, 31 (27%) met five study-quality criteria, and 22 of these also met the minimum criterion for study transferability (‘generalisability’). Of the 56 comparisons made in the higher-quality studies, 16 (29%) show a health improvement with cost savings for the CIM therapy versus usual care. Study quality of the cost-utility analyses (CUAs) of CIM was generally comparable to that seen in CUAs across all medicine according to several measures, and the quality of the cost-saving studies was slightly, but not significantly, lower than those showing cost increases (85% vs 88%, p=0.460). Conclusions This comprehensive review identified many CIM economic evaluations missed by previous reviews and emerging evidence of cost

  12. Comparison of Prostate-Specific Membrane Antigen–Based 18F-DCFBC PET/CT to Conventional Imaging Modalities for Detection of Hormone-Naïve and Castration-Resistant Metastatic Prostate Cancer

    PubMed Central

    Rowe, Steven P.; Macura, Katarzyna J.; Ciarallo, Anthony; Mena, Esther; Blackford, Amanda; Nadal, Rosa; Antonarakis, Emmanuel S.; Eisenberger, Mario A.; Carducci, Michael A.; Ross, Ashley E.; Kantoff, Philip W.; Holt, Daniel P.; Dannals, Robert F.; Mease, Ronnie C.; Pomper, Martin G.; Cho, Steve Y.

    2016-01-01

    Conventional imaging modalities (CIMs) have limited sensitivity and specificity for detection of metastatic prostate cancer. We examined the potential of a first-in-class radiofluorinated small-molecule inhibitor of prostate-specific membrane antigen (PSMA), N-[N-[(S)-1,3-dicarboxypropyl]carbamoyl]-4-18F-fluorobenzyl-l-cysteine (18F-DCFBC), to detect metastatic hormone-naïve (HNPC) and castration-resistant prostate cancer (CRPC). Methods Seventeen patients were prospectively enrolled (9 HNPC and 8 CRPC); 16 had CIM evidence of new or progressive metastatic prostate cancer and 1 had high clinical suspicion of metastatic disease. 18F-DCFBC PET/CT imaging was obtained with 2 successive PET scans starting at 2 h after injection. Patients were imaged with CIM at approximately the time of PET. A lesion-by-lesion analysis of PET to CIM was performed in the context of either HNPC or CRPC. The patients were followed with available clinical imaging as a reference standard to determine the true nature of identified lesions on PET and CIM. Results On the lesion-by-lesion analysis, 18F-DCFBC PET was able to detect a larger number of lesions (592 positive with 63 equivocal) than CIM (520 positive with 61 equivocal) overall, in both HNPC and CRPC patients. 18F-DCFBC PET detection of lymph nodes, bone lesions, and visceral lesions was superior to CIM. When intrapatient clustering effects were considered, 18F-DCFBC PET was estimated to be positive in a large proportion of lesions that would be negative or equivocal on CIM (0.45). On follow-up, the sensitivity of 18F-DCFBC PET (0.92) was superior to CIM (0.71). 18F-DCFBC tumor uptake was increased at the later PET time point (∼2.5 h after injection), with background uptake showing a decreasing trend on later PET. Conclusion PET imaging with 18F-DCFBC, a small-molecule PSMA-targeted radiotracer, detected more lesions than CIM and promises to diagnose and stage patients with metastatic prostate cancer more accurately than current

  13. [The use of food supplements - beverages and concentrated food products in tablets made from plants in sanatory and health resort rehabilitation of patients with chronic pathology].

    PubMed

    Rakhmanov, R S; Zaĭtsev, L M; Diudiakov, A A; Kaptsova, E V; Gruzdeva, A E

    2004-01-01

    The effectiveness of a recovery complex optimization in conditions of the sanatorium-resort rehabilitation of patients with chronic pathology by provision of the dietotherapy ration balance on nutrients, the use of natural (of the plant raw material cryopowders in the form of teas and tableted forms) and the "Centrum" synthetic vitamin-mineral complexes, probiotics was substantiated and demonstrated. PMID:15154365

  14. Experiential Education, Outdoor Adventure As a Modality in Youth Care and Residential Treatment. A Survey of Programs, Principles, Research and Practice on the European Continent, Especially the Netherlands.

    ERIC Educational Resources Information Center

    Duindam, Ton

    Orthopedagogisch Centrum Michiel is a multifunctional institution in the eastern Netherlands for youth with emotional problems. The staff of the institution's residential treatment center has gradually become involved with outdoor experiential education through training programs, conferences, special projects, and supervised programs. Activities…

  15. Experiential Education, Outdoor Adventure As a Modality in Residential Treatment. A Survey of Programs, Principles, Research and Practice.

    ERIC Educational Resources Information Center

    Duindam, Ton

    Orthopedagogisch Centrum (OC) Michiel is a multifunctional regional institution in the Netherlands that serves troubled families and youth at risk. Outdoor programs are used as a treatment modality for adolescents with behavior disorders, drug addictions, or criminal records. Outward Bound was the first experiential outdoor program in the…

  16. Immunohistochemical Studies of Cytoskeletal and Extracellular Matrix Components in Dogfish Scyliorhinus canicula L. Notochordal Cells.

    PubMed

    Restović, Ivana; Vukojević, Katarina; Paladin, Antonela; Saraga-Babić, Mirna; Bočina, Ivana

    2015-10-01

    Immunofluorescence and immunohistochemical techniques were used to define the distribution of cytoskeletal (cytokeratin 8, vimentin) and extracellular matrix components (collagen type I, collagen type II, hyaluronic acid, and aggrecan) and bone morphogenetic proteins 4 and 7 (BMP4 and BMP7) in the notochord of the lesser spotted dogfish Scyliorhinus canicula L. Immunolocalization of hyaluronic acid was observed in the notochord, vertebral centrum, and neural and hemal arches, while positive labeling to aggrecan was observed in the ossified centrum, notochord, and the perichondrium of the hyaline cartilage. Type I collagen was observed in the mineralized cartilage of the vertebral bodies, the notochord, the fibrocartilage of intervertebral disc, and the perichondrium. A positive labeling to type II collagen was observed in the inner part of the cartilaginous vertebral centrum and the notochord, as well as in the neural arch and muscle tissue, but there was no appreciable labeling of the hyaline cartilage. The presence of both BMP4 and BMP7 was seen in the mineralized vertebral centrum, notochordal cells, and neural arch. The notochordal cells expressed both cytokeratin 8 and vimentin, but predominantly vimentin. Hyaluronic acid, collagen type I, and collagen type II expression confirmed the presence of a mixture of notochordal and fibrocartilaginous tissue in the intervertebral disc, while BMPs confirmed the presence of an ossification in the cartilaginous skeleton of the spotted dogfish. PMID:26147227

  17. Ascorbic Acid

    MedlinePlus

    C-500® Chewable Tablet ... C-Time® ... Centrum® Singles-Vitamin C ... Sunkist® Vitamin C ... Vicks® Vitamin C Drops ... a disease caused by a lack of vitamin C in the body.This medication is sometimes prescribed ...

  18. Researching the Relationship between the Influence of Games on Elementary School Students, Their Gender and Lesson Success Variables and Their Game Preferences

    ERIC Educational Resources Information Center

    Pepe, Kadir

    2011-01-01

    This research is a descriptive research with scanning method. It aims to define the relationship between the gender and academic success of secondary school students and their play preferences. The population of the research is composed of the secondary schools of Burdur city centrum and the sample group is composed of the students who are…

  19. NCPP's Use of Standard Metadata to Promote Open and Transparent Climate Modeling

    NASA Astrophysics Data System (ADS)

    Treshansky, A.; Barsugli, J. J.; Guentchev, G.; Rood, R. B.; DeLuca, C.

    2012-12-01

    The National Climate Predictions and Projections (NCPP) Platform is developing comprehensive regional and local information about the evolving climate to inform decision making and adaptation planning. This includes both creating and providing tools to create metadata about the models and processes used to create its derived data products. NCPP is using the Common Information Model (CIM), an ontology developed by a broad set of international partners in climate research, as its metadata language. This use of a standard ensures interoperability within the climate community as well as permitting access to the ecosystem of tools and services emerging alongside the CIM. The CIM itself is divided into a general-purpose (UML & XML) schema which structures metadata documents, and a project or community-specific (XML) Controlled Vocabulary (CV) which constraints the content of metadata documents. NCPP has already modified the CIM Schema to accommodate downscaling models, simulations, and experiments. NCPP is currently developing a CV for use by the downscaling community. Incorporating downscaling into the CIM will lead to several benefits: easy access to the existing CIM Documents describing CMIP5 models and simulations that are being downscaled, access to software tools that have been developed in order to search, manipulate, and visualize CIM metadata, and coordination with national and international efforts such as ES-DOC that are working to make climate model descriptions and datasets interoperable. Providing detailed metadata descriptions which include the full provenance of derived data products will contribute to making that data (and, the models and processes which generated that data) more open and transparent to the user community.

  20. Molecular evidence of Burkholderia pseudomallei genotypes based on geographical distribution

    PubMed Central

    Zulkefli, Noorfatin Jihan; Mariappan, Vanitha; Vellasamy, Kumutha Malar; Chong, Chun Wie; Thong, Kwai Lin; Ponnampalavanar, Sasheela; Vadivelu, Jamuna

    2016-01-01

    Background. Central intermediary metabolism (CIM) in bacteria is defined as a set of metabolic biochemical reactions within a cell, which is essential for the cell to survive in response to environmental perturbations. The genes associated with CIM are commonly found in both pathogenic and non-pathogenic strains. As these genes are involved in vital metabolic processes of bacteria, we explored the efficiency of the genes in genotypic characterization of Burkholderia pseudomallei isolates, compared with the established pulsed-field gel electrophoresis (PFGE) and multilocus sequence typing (MLST) schemes. Methods. Nine previously sequenced B. pseudomallei isolates from Malaysia were characterized by PFGE, MLST and CIM genes. The isolates were later compared to the other 39 B. pseudomallei strains, retrieved from GenBank using both MLST and sequence analysis of CIM genes. UniFrac and hierachical clustering analyses were performed using the results generated by both MLST and sequence analysis of CIM genes. Results. Genetic relatedness of nine Malaysian B. pseudomallei isolates and the other 39 strains was investigated. The nine Malaysian isolates were subtyped into six PFGE profiles, four MLST profiles and five sequence types based on CIM genes alignment. All methods demonstrated the clonality of OB and CB as well as CMS and THE. However, PFGE showed less than 70% similarity between a pair of morphology variants, OS and OB. In contrast, OS was identical to the soil isolate, MARAN. To have a better understanding of the genetic diversity of B. pseudomallei worldwide, we further aligned the sequences of genes used in MLST and genes associated with CIM for the nine Malaysian isolates and 39 B. pseudomallei strains from NCBI database. Overall, based on the CIM genes, the strains were subtyped into 33 profiles where majority of the strains from Asian countries were clustered together. On the other hand, MLST resolved the isolates into 31 profiles which formed three clusters

  1. Activation of TRPM3 by a potent synthetic ligand reveals a role in peptide release

    PubMed Central

    Held, Katharina; Kichko, Tatjana; De Clercq, Katrien; Klaassen, Hugo; Van Bree, Rieta; Vanherck, Jean-Christophe; Marchand, Arnaud; Reeh, Peter W.; Chaltin, Patrick; Voets, Thomas; Vriens, Joris

    2015-01-01

    Transient receptor potential (TRP) cation channel subfamily M member 3 (TRPM3), a member of the TRP channel superfamily, was recently identified as a nociceptor channel in the somatosensory system, where it is involved in the detection of noxious heat; however, owing to the lack of potent and selective agonists, little is known about other potential physiological consequences of the opening of TRPM3. Here we identify and characterize a synthetic TRPM3 activator, CIM0216, whose potency and apparent affinity greatly exceeds that of the canonical TRPM3 agonist, pregnenolone sulfate (PS). In particular, a single application of CIM0216 causes opening of both the central calcium-conducting pore and the alternative cation permeation pathway in a membrane-delimited manner. CIM0216 evoked robust calcium influx in TRPM3-expressing somatosensory neurons, and intradermal injection of the compound induced a TRPM3-dependent nocifensive behavior. Moreover, CIM0216 elicited the release of the peptides calcitonin gene-related peptide (CGRP) from sensory nerve terminals and insulin from isolated pancreatic islets in a TRPM3-dependent manner. These experiments identify CIM0216 as a powerful tool for use in investigating the physiological roles of TRPM3, and indicate that TRPM3 activation in sensory nerve endings can contribute to neurogenic inflammation. PMID:25733887

  2. Effective Communication About the Use of Complementary and Integrative Medicine in Cancer Care

    PubMed Central

    Cohen, Lorenzo

    2014-01-01

    Abstract Complementary and integrative medicine (CIM) is becoming an increasingly popular and visible component of oncology care. Many patients affected by cancer and their family members are looking for informed advice and desire communication with their physicians about CIM use. Patients affected by cancer come to discuss CIM use with intense emotions and are experiencing an existential crisis that cannot be ignored. Effective communication is crucial in establishing trust with these patients and their families. Communication is now recognized as a core clinical skill in medicine, including cancer care, and is important to the delivery of high-quality care. The quality of communication affects patient satisfaction, decision-making, patient distress and well-being, compliance, and even malpractice litigation. The communication process about CIM use requires a very sensitive approach that depends on effective communication skills, such as experience in listening, encouraging hope, and ability to convey empathy and compassion. This process can be divided into two parts: the “how” and the “what”. The “how” relates to the change in clinician attitude, the process of gathering information, addressing patients' unmet needs and emotions, and dealing with uncertainty. The “what” relates to the process of information exchange while assisting patients in decisions about CIM use by using reliable information sources, leading to informed decision-making. PMID:23863085

  3. Directed evolution of Methanococcus jannaschii citramalate synthase for biosynthesis of 1-propanol and 1-butanol by Escherichia coli.

    PubMed

    Atsumi, Shota; Liao, James C

    2008-12-01

    Biofuels synthesized from renewable resources are of increasing interest because of global energy and environmental problems. We have previously demonstrated production of higher alcohols from Escherichia coli using a 2-keto acid-based pathway. Here, we took advantage of the growth phenotype associated with 2-keto acid deficiency to construct a hyperproducer of 1-propanol and 1-butanol by evolving citramalate synthase (CimA) from Methanococcus jannaschii. This new pathway, which directly converts pyruvate to 2-ketobutyrate, bypasses threonine biosynthesis and represents the shortest keto acid-mediated pathway for producing 1-propanol and 1-butanol from glucose. Directed evolution of CimA enhanced the specific activity over a wide temperature range (30 to 70 degrees C). The best CimA variant was found to be insensitive to feedback inhibition by isoleucine in addition to the improved activity. This CimA variant enabled 9- and 22-fold higher production levels of 1-propanol and 1-butanol, respectively, compared to the strain expressing the wild-type CimA. This work demonstrates (i) the first production of 1-propanol and 1-butanol using the citramalate pathway and (ii) the benefit of the 2-keto acid pathway that enables a growth-based evolutionary strategy to improve the production of non-growth-related products. PMID:18952866

  4. Critical Infrastructure Modeling System

    Energy Science and Technology Software Center (ESTSC)

    2004-10-01

    The Critical Infrastructure Modeling System (CIMS) is a 3D modeling and simulation environment designed to assist users in the analysis of dependencies within individual infrastructure and also interdependencies between multiple infrastructures. Through visual cuing and textual displays, a use can evaluate the effect of system perturbation and identify the emergent patterns that evolve. These patterns include possible outage areas from a loss of power, denial of service or access, and disruption of operations. Method ofmore » Solution: CIMS allows the user to model a system, create an overlay of information, and create 3D representative images to illustrate key infrastructure elements. A geo-referenced scene, satellite, aerial images or technical drawings can be incorporated into the scene. Scenarios of events can be scripted, and the user can also interact during run time to alter system characteristics. CIMS operates as a discrete event simulation engine feeding a 3D visualization.« less

  5. Demonstration of real-time monitoring of a photolithographic exposure process using chemical ionization mass spectrometry

    SciTech Connect

    Mowry, C.D.

    1998-02-01

    Silicon wafers are coated with photoresist and exposed to ultraviolet (UV) light in a laboratory to simulate typical conditions expected in an actual semiconductor manufacturing process tool. Air is drawn through the exposure chamber and analyzed using chemical ionization mass spectrometry (CI/MS). Species that evaporate or outgas from the wafer are thus detected. The purpose of such analyses is to determine the potential of CI/MS as a real-time process monitoring tool. Results demonstrate that CI/MS can remotely detect the products evolved before, during, and after wafer UV exposure; and that the quantity and type of products vary with the photoresist coated on the wafer. Such monitoring could provide semiconductor manufacturers benefits in quality control and process analysis. Tool and photoresist manufacturers could also realize benefits from this measurement technique with respect to new tool, method, or photoresist development. The benefits realized can lead to improved device yields and reduced product and development costs.

  6. A 'Common Information Model' for the climate modelling process

    NASA Astrophysics Data System (ADS)

    Treshansky, Allyn; Devine, Gerard

    2010-05-01

    The Common Information Model (CIM), developed by the EU-funded METAFOR project (http://metaforclimate.eu), is a formal model of the climate modeling process. It provides a rich structured description of not only climate data but also the "provenance" of that data: the software models and tools used to generate that data, the simulations those models implement, the experiments those simulations conform to, etc.. This formal metadata model is expected to add value to those datasets by firstly codifying what is currently found only in the heads of climate experts (the aforementioned provenance of climate datasets), and secondly by allowing tools to be developed that make searching for and analysing climate datasets a much more intuitive process than it has been in the past. This paper will describe the structure of the CIM, concentrating on how it works with and what it adds to other metadata standards. As alluded to above, current metadata standards concentrate on the contents of a climate dataset. Scientific detail and relevance of the model components that generated that data as well as the context for why it was run are missing. The CIM addresses this gap. However, it does not aim to replace existing standards. Rather, wherever possible it re-uses them. It also attempts to standardise our understanding of climate modeling at a very high level, at a conceptual level. This results in a UML description of climate modeling, the CONCIM. METAFOR extracts from this high-level UML the bits of the CIM that we want to use in our applications; These bits get converted into a set of XSD application schemas, the APPCIM. Other user groups may derive a different APPCIM (in a different format) that suits them from the same CONCIM. Thus there is a common understanding of the concepts used in climate modeling even if the implementation differs. In certain key places the CIM describes a general structure over which a specific Controlled Vocabulary (CV) can be applied. For example

  7. Estimated Probabililty of Chest Injury During an International Space Station Mission

    NASA Technical Reports Server (NTRS)

    Lewandowski, Beth E.; Milo, Eric A.; Brooker, John E.; Weaver, Aaron S.; Myers, Jerry G., Jr.

    2013-01-01

    The Integrated Medical Model (IMM) is a decision support tool that is useful to spaceflight mission planners and medical system designers when assessing risks and optimizing medical systems. The IMM project maintains a database of medical conditions that could occur during a spaceflight. The IMM project is in the process of assigning an incidence rate, the associated functional impairment, and a best and a worst case end state for each condition. The purpose of this work was to develop the IMM Chest Injury Module (CIM). The CIM calculates the incidence rate of chest injury per person-year of spaceflight on the International Space Station (ISS). The CIM was built so that the probability of chest injury during one year on ISS could be predicted. These results will be incorporated into the IMM Chest Injury Clinical Finding Form and used within the parent IMM model.

  8. Technical note: Detection of dimethylamine in the low pptv range using nitrate Chemical Ionization-Atmospheric Pressure interface-Time Of Flight (CI-APi-TOF) mass spectrometry

    NASA Astrophysics Data System (ADS)

    Simon, M.; Heinritzi, M.; Herzog, S.; Leiminger, M.; Bianchi, F.; Praplan, A.; Dommen, J.; Curtius, J.; Kürten, A.

    2015-12-01

    Amines are potentially important for atmospheric new particle formation and therefore the demand for highly sensitive gas phase amine measurements has emerged in the last several years. Nitrate Chemical Ionization Mass Spectrometry (CIMS) is routinely used for the measurement of gas phase-sulfuric acid in the sub-pptv range. Furthermore, Extremely Low Volatile Organic Compounds (ELVOCs) can be detected with a nitrate CIMS. In this study we demonstrate that a nitrate CIMS can also be used for the sensitive measurement of dimethylamine ((CH3)2NH, DMA) using the NO3-(HNO3)1-2(DMA) cluster ion signals. This observation was made at the CLOUD aerosol chamber, which was also used for calibration measurements. Good linearity between 0 and ~120 pptv of DMA as well as a sub-pptv detection limit of 0.7 pptv for a 10 min integration time are demonstrated at 278 K and 38 % RH.

  9. Computer integration of engineering design and production: A national opportunity

    NASA Technical Reports Server (NTRS)

    1984-01-01

    The National Aeronautics and Space Administration (NASA), as a purchaser of a variety of manufactured products, including complex space vehicles and systems, clearly has a stake in the advantages of computer-integrated manufacturing (CIM). Two major NASA objectives are to launch a Manned Space Station by 1992 with a budget of $8 billion, and to be a leader in the development and application of productivity-enhancing technology. At the request of NASA, a National Research Council committee visited five companies that have been leaders in using CIM. Based on these case studies, technical, organizational, and financial issues that influence computer integration are described, guidelines for its implementation in industry are offered, and the use of CIM to manage the space station program is recommended.

  10. Critical Infrastructure Modeling System

    SciTech Connect

    2004-10-01

    The Critical Infrastructure Modeling System (CIMS) is a 3D modeling and simulation environment designed to assist users in the analysis of dependencies within individual infrastructure and also interdependencies between multiple infrastructures. Through visual cuing and textual displays, a use can evaluate the effect of system perturbation and identify the emergent patterns that evolve. These patterns include possible outage areas from a loss of power, denial of service or access, and disruption of operations. Method of Solution: CIMS allows the user to model a system, create an overlay of information, and create 3D representative images to illustrate key infrastructure elements. A geo-referenced scene, satellite, aerial images or technical drawings can be incorporated into the scene. Scenarios of events can be scripted, and the user can also interact during run time to alter system characteristics. CIMS operates as a discrete event simulation engine feeding a 3D visualization.

  11. Application of high-resolution time-of-flight chemical ionization mass spectrometry measurements to estimate volatility distributions of α-pinene and naphthalene oxidation products

    DOE PAGESBeta

    Chhabra, P. S.; Lambe, A. T.; Canagaratna, M. R.; Stark, H.; Jayne, J. T.; Onasch, T. B.; Davidovits, P.; Kimmel, J. R.; Worsnop, D. R.

    2015-01-05

    Recent developments in high-resolution time-of-flight chemical ionization mass spectrometry (HR-ToF-CIMS) have made it possible to directly detect atmospheric organic compounds in real time with high sensitivity and with little or no fragmentation, including low-volatility, highly oxygenated organic vapors that are precursors to secondary organic aerosol formation. Here, using ions identified by high-resolution spectra from an HR-ToF-CIMS with acetate reagent ion chemistry, we develop an algorithm to estimate the vapor pressures of measured organic acids. The algorithm uses identified ion formulas and calculated double bond equivalencies, information unavailable in quadrupole CIMS technology, as constraints for the number of possible oxygen-containing functionalmore » groups. The algorithm is tested with acetate chemical ionization mass spectrometry (acetate-CIMS) spectra of O3 and OH oxidation products of α-pinene and naphthalene formed in a flow reactor with integrated OH exposures ranged from 1.2 × 1011 to 9.7 × 1011 molec s cm−3, corresponding to approximately 1.0 to 7.5 days of equivalent atmospheric oxidation. Measured gas-phase organic acids are similar to those previously observed in environmental chamber studies. For both precursors, we find that acetate-CIMS spectra capture both functionalization (oxygen addition) and fragmentation (carbon loss) as a function of OH exposure. The level of fragmentation is observed to increase with increased oxidation. The predicted condensed-phase secondary organic aerosol (SOA) average acid yields and O/C and H/C ratios agree within uncertainties with previous chamber and flow reactor measurements and ambient CIMS results. While acetate reagent ion chemistry is used to selectively measure organic acids, in principle this method can be applied to additional reagent ion chemistries depending on the application.« less

  12. Makin' Stories: From New York to Monterey and Now to D.C., Dutch Crew Documents Best "2.0" Practices in U.S. Libraries

    ERIC Educational Resources Information Center

    Computers in Libraries, 2008

    2008-01-01

    Jaap van de Geer, Erik Boekesteijn, Michael Stephens, and Geert van den Boogaard toured the U.S. last fall and interviewed librarians about how they are revitalizing their libraries. These four Dutch men are representatives of the Delft (the Netherlands) Public Library Concept Center and they came to the U.S. for their "Shanachie Tour." Their trip…

  13. Guidelines for Engineering Teachers Concerning Educating the Engineer for Innovative and Entrepreneurial Activity.

    ERIC Educational Resources Information Center

    Eekels, J.

    1987-01-01

    Emphasizes that the concept of design is fundamental in innovation. Outlines the work of the European Society for Engineering Education-Working group on Innovation. Describes the innovation-management stream in the curriculum of the faculty of Industrial Design Engineering at Delft University of Technology, Netherlands. (CW)

  14. Going Dutch: Higher Education in the Netherlands

    ERIC Educational Resources Information Center

    Law, David

    2016-01-01

    This article outlines some of the policy issues currently faced by research-based universities in the Netherlands. The focus is on four leading universities (University of Amsterdam: UvA; Free University of Amsterdam: VU; Leiden University; and Delft University of Technology: TUD). The author visited these institutions as part of a Study Tour…

  15. What's Your Story?: Dutch Library DOK's New Cutting-Edge Community Tech Projects

    ERIC Educational Resources Information Center

    Boekesteijn, Erik

    2010-01-01

    DOK, the cutting-edge library center in Delft, the Netherlands, has been finding new ways to elaborate on the social networking impulse. A good library unites people from all levels of society, and DOK's unique innovation department focuses specifically on how media can bring people together. It's doing so using technology to inspire and connect…

  16. A Joint Venture Model for Teaching Required Courses in "Ethics and Engineering" to Engineering Students

    ERIC Educational Resources Information Center

    Zandvoort, H.; Van Hasselt, G. J.; Bonnet, J. A. B. A. F.

    2008-01-01

    We present our experience, spanning more than 10 years of teaching a course on "ethics and engineering" for a group of MSc programmes in applied sciences at Delft University of Technology. The course is taught by a team of teachers from the faculty of Applied Sciences and from the department of Philosophy of the Faculty of Technology, Policy and…

  17. The New Library, A Hybrid Organization.

    ERIC Educational Resources Information Center

    Waaijers, Leo

    This paper discusses changes in technology in libraries over the last decade, beginning with an overview of the impact of databases, the Internet, and the World Wide Web on libraries. The integration of technology at Delft University of Technology (Netherlands) is described, including use of scanning technology, fax, and e-mail for document…

  18. Strengthening the Link between Theory and Practice in Teaching Design Engineering: An Empirical Study on a New Approach

    ERIC Educational Resources Information Center

    Tempelman, E.; Pilot, A.

    2011-01-01

    In 2007, the Faculty of Industrial Design Engineering of the Delft University of Technology introduced a new bachelor program. Based on theories of learning and instruction three design principles were used to develop an approach that aims to make it easier for students to bridge the gap between theoretical design engineering courses and practical…

  19. Review of aerodynamic design in the Netherlands

    NASA Technical Reports Server (NTRS)

    Labrujere, Th. E.

    1991-01-01

    Aerodynamic design activities in the Netherlands, which take place mainly at Fokker, the National Aerospace Laboratory (NLR), and Delft University of Technology (TUD), are discussed. The survey concentrates on the development of the Fokker 100 wing, glider design at TUD, and research at NLR in the field of aerodynamic design. Results are shown to illustrate these activities.

  20. A Reference Implementation of the OGC CSW EO Standard for the ESA HMA-T project

    NASA Astrophysics Data System (ADS)

    Bigagli, Lorenzo; Boldrini, Enrico; Papeschi, Fabrizio; Vitale, Fabrizio

    2010-05-01

    This work was developed in the context of the ESA Heterogeneous Missions Accessibility (HMA) project, whose main objective is to involve the stakeholders, namely National space agencies, satellite or mission owners and operators, in an harmonization and standardization process of their ground segment services and related interfaces. Among HMA objectives was the specification, conformance testing, and experimentation of two Extension Packages (EPs) of the ebRIM Application Profile (AP) of the OGC Catalog Service for the Web (CSW) specification: the Earth Observation Products (EO) EP (OGC 06-131) and the Cataloguing of ISO Metadata (CIM) EP (OGC 07-038). Our contributions have included the development and deployment of Reference Implementations (RIs) for both the above specifications, and their integration with the ESA Service Support Environment (SSE). The RIs are based on the GI-cat framework, an implementation of a distributed catalog service, able to query disparate Earth and Space Science data sources (e.g. OGC Web Services, Unidata THREDDS) and to expose several standard interfaces for data discovery (e.g. OGC CSW ISO AP). Following our initial planning, the GI-cat framework has been extended in order to expose the CSW.ebRIM-CIM and CSW.ebRIM-EO interfaces, and to distribute queries to CSW.ebRIM-CIM and CSW.ebRIM-EO data sources. We expected that a mapping strategy would suffice for accommodating CIM, but this proved to be unpractical during implementation. Hence, a model extension strategy was eventually implemented for both the CIM and EO EPs, and the GI-cat federal model was enhanced in order to support the underlying ebRIM AP. This work has provided us with new insights into the different data models for geospatial data, and the technologies for their implementation. The extension is used by suitable CIM and EO profilers (front-end mediator components) and accessors (back-end mediator components), that relate ISO 19115 concepts to EO and CIM ones. Moreover

  1. Developmental Dynamics of Radial Vulnerability in the Cerebral Compartments in Preterm Infants and Neonates

    PubMed Central

    Kostović, Ivica; Kostović-Srzentić, Mirna; Benjak, Vesna; Jovanov-Milošević, Nataša; Radoš, Milan

    2014-01-01

    The developmental vulnerability of different classes of axonal pathways in preterm white matter is not known. We propose that laminar compartments of the developing cerebral wall serve as spatial framework for axonal growth and evaluate potential of anatomical landmarks for understanding reorganization of the cerebral wall after perinatal lesions. The 3-T MRI (in vivo) and histological analysis were performed in a series of cases ranging from 22 postconceptional weeks to 3 years. For the follow-up scans, three groups of children (control, normotypic, and preterms with lesions) were examined at the term equivalent age and after the first year of life. MRI and histological abnormalities were analyzed in the following compartments: (a) periventricular, with periventricular fiber system; (b) intermediate, with periventricular crossroads, sagittal strata, and centrum semiovale; (c) superficial, composed of gyral white matter, subplate, and cortical plate. Vulnerability of thalamocortical pathways within the crossroads and sagittal strata seems to be characteristic for early preterms, while vulnerability of long association pathways in the centrum semiovale seems to be predominant feature of late preterms. The structural indicator of the lesion of the long association pathways is the loss of delineation between centrum semiovale and subplate remnant, which is possible substrate of the diffuse periventricular leukomalacia. The enhanced difference in MR signal intensity of centrum semiovale and subplate remnant, observed in damaged children after first year, we interpret as structural plasticity of intact short cortico-cortical fibers, which grow postnatally through U-zones and enter the cortex through the subplate remnant. Our findings indicate that radial distribution of MRI signal abnormalities in the cerebral compartments may be related to lesion of different classes of axonal pathways and have prognostic value for predicting the likely outcome of prenatal and

  2. Eviota piperata, a new gobiid species from Palau (Teleostei: Gobiidae).

    PubMed

    Greenfield, David W; Winterbottom, Richard

    2014-01-01

    A new species of dwarfgoby, Eviota piperata is described from Palau. It belongs to the cephalic sensory-pore system Group II (lacking only the IT pore); has a dorsal/anal-fin formula of 8/8; has some pectoral-fin rays branched; no dark spot over the ural centrum; the male genital papilla is not fimbriate; and the cheek and body are heavily peppered with chromatophores. PMID:24869823

  3. Scaling of lumbar vertebrae in anthropoids and implications for evolution of the hominoid axial skeleton.

    PubMed

    Nakatsukasa, Masato; Hirose, Youichi

    2003-04-01

    We investigated allometric relationships between vertebral centrum cranial surface areas and body weight and skeletal lumbar length in extant platyrrhine and cercopithecid species. Platyrrhines have smaller lumbar vertebral centra regarding the cranial surface area relative to their body weight than extant catarrhines. However, the stress to the spine of quadrupeds is not only influenced by the body weight but also its length, which contributes to the amount of bending moment. Our results indicated that platyrrhines and cercopithecids have similar lumbar vertebral centrum surface areas when they are scaled on the product of the body weight and skeletal lumbar length. Platyrrhines generally tend to have relatively short lumbar columns for a given body weight. As a result of this tendency, their vertebral centra appear relatively small if only body weight is taken into account. The centrum surface area is rather constant relative to the product of the body weight and skeletal lumbar length within platyrrhines or cercopithecids, despite the fact that skeletal lumbar length is in itself rather variable relative to body weight. This result indicates that the vertebral centrum articular area, the lumbar column length and the body weight are strongly correlated with each other and that such relationships are similar between platyrrhines and cercopithecids. These relationships were observed using both the zygapophyseal and rib definitions of the lumbar vertebrae. However, they were more clearly observed when the zygapophyseal definition was adopted. It appeared that lumbar vertebrae of Proconsul nyanzae (KNM-MW 13142) had distinctively smaller surface areas relative to its body weight and lumbar length than for platyrrhines and cercopithecids, differing from extant hominoids, which have comparatively larger lumbar vertebrae. In the case of Morotopithecus, the lumbar vertebral surface area seems to be as large as in extant platyrrhines and cercopithecids if it had a reduced

  4. 75 FR 59784 - Notice of Fiscal Year 2011 Safety Grants and Solicitation for Applications

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-28

    ... opportunities (75 FR 40023). This notice requested comments on the originally proposed dates. Only one comment... Management (PRISM) grants; Safety Data Improvement Program grants (SaDIP); and the Commercial Vehicle..., cim.weiss@dot.gov , 202-366-0275. PRISM Grants--Tom Lawler, tom.lawler@dot.gov , 202-366-3866....

  5. A crucial role of L-selectin in C protein-induced experimental polymyositis of mice

    PubMed Central

    Oishi, Kyosuke; Hamaguchi, Yasuhito; Matsushita, Takashi; Hasegawa, Minoru; Okiyama, Naoko; Dernedde, Jens; Weinhart, Marie; Haag, Rainer; Tedder, Thomas F.; Takehara, Kazuhiko; Kohsaka, Hitoshi; Fujimoto, Manabu

    2014-01-01

    Objective To investigate the role of adhesion molecules in C protein-induced myositis (CIM), a murine model for polymyositis (PM). Methods CIM was induced in wild type mice, L-selectin-deficient (L-selectin-/-) mice, ICAM-1-deficient (ICAM-1-/-) mice, and both L-selectin- and ICAM-1-deficient (L-selectin-/-ICAM-1-/-) mice. The severity of myositis, inflammatory cell infiltration, and mRNA expression in the inflamed muscles were examined. The effect of dendritic polyglycerol sulfate (dPGS), a synthetic inhibitor that suppresses the function of L-selectin and endothelial P-selectin, was also examined. Results L-selectin-/- mice and L-selectin-/-ICAM-1-/- mice developed significantly less severe myositis compared to wild type mice, while ICAM-1 deficiency did not inhibit the development of myositis. L-selectin-/- mice transferred with wild type T cells developed myositis. Wild type mice treated with dPGS significantly diminished the severity of myositis compared to control-treated wild type mice. Conclusions These data indicate that L-selectin plays a major role in the development of CIM, whereas ICAM-1 plays a lesser, if any, role in the development of CIM. L-selectin-targeted therapy may be a candidate for the treatment of PM. PMID:24644046

  6. Implementing Computer Integrated Manufacturing Technician Program.

    ERIC Educational Resources Information Center

    Gibbons, Roger

    A computer-integrated manufacturing (CIM) technician program was developed to provide training and technical assistance to meet the needs of business and industry in the face of the demands of high technology. The Computer and Automated Systems Association (CASA) of the Society of Manufacturing Engineers provided the incentive and guidelines…

  7. Switching of charged inverse micelles in non-polar liquids.

    PubMed

    Prasad, Manoj; Beunis, Filip; Neyts, Kristiaan; Strubbe, Filip

    2015-11-15

    The electrodynamics of micellar ions in nonpolar liquids are well understood for the case that a voltage is applied or switched off. In this work, the electrodynamics of charged inverse micelles (CIMs) are studied when the applied voltage is switched to the opposite polarity, which is relevant for applications such as electrophoretic displays and liquid toner printing. Transient current measurements are used to characterize the switching of CIMs formed in a solution of surfactant polyisobutylene succinimide in n-dodecane. For reverse voltages with amplitude below 10V the measurements are in good agreement with a drift and diffusion model, confirming the established understanding of CIMs in nonpolar liquids. When the charge content is high, the reversal current shows a characteristic peak which is explained on the basis of dynamic space-charge effects. However, for reverse voltages larger than 10V, the transient currents are influenced by electrohydrodynamic flow in the liquid causing the CIMs to switch faster than predicted by the model. The occurrence of electrohydrodynamic flow is verified by optical tracking of tracer particles. Also, when the polarizing voltage is applied for longer times, an additional current peak emerges which is due to the accumulation of newly generated charges at the electrodes. PMID:26203590

  8. Distribution of Peroxy Radicals during the TOPSE Campaign and Implications for Ozone Photochemistry

    NASA Astrophysics Data System (ADS)

    Cantrell, C. A.; Mauldin, R. L.; Zondlo, M. A.; Koscuich, E.; Eisele, F. L.; Ridley, B. A.; Atlas, E.; Montzka, D.; Walega, J.; Grahek, F.; Weinheimer, A.; Flocke, F.; Shetter, R. E.; Lefer, B.; Hall, S.; Hannigan, J.; Coffey, M.; Fried, A.; Wert, B.; Henry, B.; Blake, D.; Blake, N.; Cohen, R.; Thornton, J.; Rosen, R.; Wooldridge, P.; Wang, R.; Wang, B.; Browell, E.; Hair, J.; Butler, C.; Grant, W.; DeYoung, R.; Fenn, M.; Clayton, M.; Brackett, V.; Brasseur, L.; Harper, D.; Notari, A.; Williams, J.; Alexander, G.; Insley, G.; Talbot, R.; Dibb, J.; Scheurer, E.; Seid, G.; Snow, J.; Heikes, B.; Merrill, J.; Emmons, L.; Cinquini, L.; Madronich, S.

    2001-05-01

    Peroxy Radicals (HO2 and RO2) were measured during the TOPSE campaign (February through May, 2000) using a chemical ionization mass spectrometric (CIMS) based technique. The basis of the measurement will be described and the results presented. The role of peroxy radicals in the photochemistry of ozone during the mid-to-high latitude winter-to-spring transition will be discussed.

  9. 28 CFR 524.74 - Activities clearance.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 28 Judicial Administration 2 2010-07-01 2010-07-01 false Activities clearance. 524.74 Section 524.74 Judicial Administration BUREAU OF PRISONS, DEPARTMENT OF JUSTICE INMATE ADMISSION, CLASSIFICATION, AND TRANSFER CLASSIFICATION OF INMATES Central Inmate Monitoring (CIM) System § 524.74...

  10. 28 CFR 524.70 - Purpose and scope.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 28 Judicial Administration 2 2010-07-01 2010-07-01 false Purpose and scope. 524.70 Section 524.70 Judicial Administration BUREAU OF PRISONS, DEPARTMENT OF JUSTICE INMATE ADMISSION, CLASSIFICATION, AND TRANSFER CLASSIFICATION OF INMATES Central Inmate Monitoring (CIM) System § 524.70 Purpose and scope....

  11. Spatial-temporal variation of precipitation concentration and structure in the Wei River Basin, China

    NASA Astrophysics Data System (ADS)

    Huang, Shengzhi; Huang, Qiang; Chen, Yutong; Xing, Li; Leng, Guoyong

    2015-05-01

    It is of significant importance to investigate precipitation structure and precipitation concentration due to their great impact on droughts, floods, soil erosion, as well as water resources management. A complete investigation of precipitation structure and its distribution pattern in the Wei River Basin was performed based on recorded daily precipitation data in this study. Two indicators were used: concentration index based on daily precipitation (CID), to assess the distribution of rainy days, and concentration index based on monthly precipitation (CIM), to estimate the seasonality of the precipitation. Besides, the modified Mann-Kendall trend test method was employed to capture the variation trends of CID and CIM. The results indicate that: (1) the 1-3-day events are the predominant precipitation events in terms of the occurrence and fractional contribution; (2) the obvious differences in the CID of various areas are found in the Wei River Basin, and the high CID values mainly concentrate in the northern basin, conversely, the southern basin has a relatively low CID value; (3) high CIM values are primarily in the western and northern basin, reflecting a remarkable seasonality of precipitation in these regions; and (4) all of the stations show a downward trend of CIM, which indicates that the monthly precipitation distribution tends to be more uniform.

  12. Exploiting the spatial locality of electron correlation within the parametric two-electron reduced-density-matrix method

    NASA Astrophysics Data System (ADS)

    DePrince, A. Eugene; Mazziotti, David A.

    2010-01-01

    The parametric variational two-electron reduced-density-matrix (2-RDM) method is applied to computing electronic correlation energies of medium-to-large molecular systems by exploiting the spatial locality of electron correlation within the framework of the cluster-in-molecule (CIM) approximation [S. Li et al., J. Comput. Chem. 23, 238 (2002); J. Chem. Phys. 125, 074109 (2006)]. The 2-RDMs of individual molecular fragments within a molecule are determined, and selected portions of these 2-RDMs are recombined to yield an accurate approximation to the correlation energy of the entire molecule. In addition to extending CIM to the parametric 2-RDM method, we (i) suggest a more systematic selection of atomic-orbital domains than that presented in previous CIM studies and (ii) generalize the CIM method for open-shell quantum systems. The resulting method is tested with a series of polyacetylene molecules, water clusters, and diazobenzene derivatives in minimal and nonminimal basis sets. Calculations show that the computational cost of the method scales linearly with system size. We also compute hydrogen-abstraction energies for a series of hydroxyurea derivatives. Abstraction of hydrogen from hydroxyurea is thought to be a key step in its treatment of sickle cell anemia; the design of hydroxyurea derivatives that oxidize more rapidly is one approach to devising more effective treatments.

  13. User Leadership in the Design and Implementation of a College Information Management System.

    ERIC Educational Resources Information Center

    Miselis, Karen

    1988-01-01

    The College Information Management System (CIMS), a comprehensive, integrated office automation and student data system in the College Office of the School of Arts and Sciences at the University of Pennsylvania, is described. The system has revitalized the advising process by supporting better tracking of student progress. (Author/MLW)

  14. Proposed Conceptual Design for the Instructional Support System for Occupational Education Reporting System.

    ERIC Educational Resources Information Center

    Edsall, Al; Kyros, William

    This paper proposes concepts for the data inputs and informational outputs for the Instructional Support System for Occupational Education (ISSOE), which is a subsystem of the Comprehensive Instructional Management System for Occupational Education (CIMS/OE) currently being developed by the New York State Education Department for the purpose of…

  15. Quantification of hydroxyacetone and glycolaldehyde using chemical ionization mass spectrometry

    NASA Astrophysics Data System (ADS)

    St. Clair, J. M.; Spencer, K. M.; Beaver, M. R.; Crounse, J. D.; Paulot, F.; Wennberg, P. O.

    2014-04-01

    Chemical ionization mass spectrometry (CIMS) enables online, rapid, in situ detection and quantification of hydroxyacetone and glycolaldehyde. Two different CIMS approaches are demonstrated employing the strengths of single quadrupole mass spectrometry and triple quadrupole (tandem) mass spectrometry. Both methods are generally capable of the measurement of hydroxyacetone, an analyte with known but minimal isobaric interferences. Tandem mass spectrometry provides direct separation of the isobaric compounds glycolaldehyde and acetic acid using distinct, collision-induced dissociation daughter ions. The single quadrupole CIMS measurement of glycolaldehyde was demonstrated during the ARCTAS-CARB (Arctic Research of the Composition of the Troposphere from Aircraft and Satellites - California Air Resources Board) 2008 campaign, while triple quadrupole CIMS measurements of glycolaldehyde and hydroxyacetone were demonstrated during the BEARPEX (Biosphere Effects on Aerosols and Photochemistry Experiment) 2009 campaign. Enhancement ratios of glycolaldehyde in ambient biomass-burning plumes are reported for the ARCTAS-CARB campaign. BEARPEX observations are compared to simple photochemical box model predictions of biogenic volatile organic compound oxidation at the site.

  16. 28 CFR 524.71 - Responsibility.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 28 Judicial Administration 2 2013-07-01 2013-07-01 false Responsibility. 524.71 Section 524.71... TRANSFER CLASSIFICATION OF INMATES Central Inmate Monitoring (CIM) System § 524.71 Responsibility... institutional level, and the Community Corrections Manager shall assume these responsibilities for...

  17. Skill-Biased Technological Change. Evidence from a Firm-Level Survey.

    ERIC Educational Resources Information Center

    Siegel, Donald S.

    A study addressed the effects of technological change using a new, rich source of firm-level data on technology usage and labor force composition. The empirical investigation is based on a survey of Long Island manufacturers' usage of computer-integrated manufacturing systems (CIMS) or advanced manufacturing technologies (AMTs). The study also…

  18. Computer Integrated Manufacturing: Physical Modelling Systems Design. A Personal View.

    ERIC Educational Resources Information Center

    Baker, Richard

    A computer-integrated manufacturing (CIM) Physical Modeling Systems Design project was undertaken in a time of rapid change in the industrial, business, technological, training, and educational areas in Australia. A specification of a manufacturing physical modeling system was drawn up. Physical modeling provides a flexibility and configurability…

  19. CIMFUELS: Commercial practice--tools vs. solutions

    SciTech Connect

    Latour, P.R.

    1997-03-01

    Continuing the them of CIMFUELS` recent editorials on good management practice, the nature of commercial offerings and practices between CIM providers and their fuel and petrochemical operating company customers and clients also warrants discussion. The commercial practices of the CIMFUELS business in this unstructured, fast changing, high technology global business has suffered unduly from inadequate distinction between tools and solutions.

  20. Mapping small-effect and linked quantitative trait loci for complex traits in backcross or DH populations via a multi-locus GWAS methodology.

    PubMed

    Wang, Shi-Bo; Wen, Yang-Jun; Ren, Wen-Long; Ni, Yuan-Li; Zhang, Jin; Feng, Jian-Ying; Zhang, Yuan-Ming

    2016-01-01

    Composite interval mapping (CIM) is the most widely-used method in linkage analysis. Its main feature is the ability to control genomic background effects via inclusion of co-factors in its genetic model. However, the result often depends on how the co-factors are selected, especially for small-effect and linked quantitative trait loci (QTL). To address this issue, here we proposed a new method under the framework of genome-wide association studies (GWAS). First, a single-locus random-SNP-effect mixed linear model method for GWAS was used to scan each putative QTL on the genome in backcross or doubled haploid populations. Here, controlling background via selecting markers in the CIM was replaced by estimating polygenic variance. Then, all the peaks in the negative logarithm P-value curve were selected as the positions of multiple putative QTL to be included in a multi-locus genetic model, and true QTL were automatically identified by empirical Bayes. This called genome-wide CIM (GCIM). A series of simulated and real datasets was used to validate the new method. As a result, the new method had higher power in QTL detection, greater accuracy in QTL effect estimation, and stronger robustness under various backgrounds as compared with the CIM and empirical Bayes methods. PMID:27435756

  1. Spatial-temporal variation of precipitation concentration and structure in the Wei River Basin, China

    NASA Astrophysics Data System (ADS)

    Huang, Shengzhi; Huang, Qiang; Chen, Yutong; Xing, Li; Leng, Guoyong

    2016-07-01

    It is of significant importance to investigate precipitation structure and precipitation concentration due to their great impact on droughts, floods, soil erosion, as well as water resources management. A complete investigation of precipitation structure and its distribution pattern in the Wei River Basin was performed based on recorded daily precipitation data in this study. Two indicators were used: concentration index based on daily precipitation (CID), to assess the distribution of rainy days, and concentration index based on monthly precipitation (CIM), to estimate the seasonality of the precipitation. Besides, the modified Mann-Kendall trend test method was employed to capture the variation trends of CID and CIM. The results indicate that: (1) the 1-3-day events are the predominant precipitation events in terms of the occurrence and fractional contribution; (2) the obvious differences in the CID of various areas are found in the Wei River Basin, and the high CID values mainly concentrate in the northern basin, conversely, the southern basin has a relatively low CID value; (3) high CIM values are primarily in the western and northern basin, reflecting a remarkable seasonality of precipitation in these regions; and (4) all of the stations show a downward trend of CIM, which indicates that the monthly precipitation distribution tends to be more uniform.

  2. Isolation and purification of blood group antigens using immuno-affinity chromatography on short monolithic columns.

    PubMed

    Mönster, Andrea; Hiller, Oliver; Grüger, Daniela; Blasczyk, Rainer; Kasper, Cornelia

    2011-02-01

    Monolithic columns have gained increasing attention as stationary phases for the separation of biomolecules and biopharmaceuticals. In the present work the performance of monolithic convective interaction media (CIM(®)) chromatography for the purification of blood group antigens was established. The proteins employed in this study are derived from blood group antigens Knops, JMH and Scianna, equipped both with a His-tag and with a V5-tag by which they can be purified. In a first step a monoclonal antibody directed against the V5-tag was immobilized on a CIM(®) Disk with epoxy chemistry. After this, the immobilized CIM(®) Disk was used in immuno-affinity chromatography to purify the three blood group antigens from cell culture supernatant. Up-scaling of the applied technology was carried out using CIM(®) Tubes. In comparison to conventional affinity chromatography, blood group antigens were also purified via His-tag using a HiTrap(®) metal-affinity column. The two purifications have been compared regarding purity, yield and purification speed. Using the monolithic support, it was possible to isolate the blood group antigens with a higher flow rate than using the conventional bed-packed column. PMID:21194702

  3. Cylindrical Induction Melter Modicon Control System

    SciTech Connect

    Weeks, G.E.

    1998-04-01

    In the last several years an extensive R{ampersand}D program has been underway to develop a vitrification system to stabilize Americium (Am) and Curium (Cm) inventories at SRS. This report documents the Modicon control system designed for the 3 inch Cylindrical Induction Melter (CIM).

  4. The Continuous Improvement Model: A K-12 Literacy Focus

    ERIC Educational Resources Information Center

    Brown, Jennifer V.

    2013-01-01

    The purpose of the study was to determine if the eight steps of the Continuous Improvement Model (CIM) provided a framework to raise achievement and to focus educators in identifying high-yield literacy strategies. This study sought to determine if an examination of the assessment data in reading revealed differences among schools that fully,…

  5. A Phenomenological Study of a Collaborative Inquiry Model for Teaching Educators Using Geographic Information Systems

    ERIC Educational Resources Information Center

    Bryant, Lara M. P.

    2010-01-01

    Geographic inquiry increases higher-order thinking skills which can be supported through the use of Geographic Information Systems (GIS). The purpose of this research project examines the effect of using a Collaborative Inquiry Model (CIM) model during professional development on the rate of effective GIS implementation in K-12 classrooms. The…

  6. Midlands Teaching Factory, LTD.

    ERIC Educational Resources Information Center

    Midlands Technical Coll., Columbia, SC.

    In 1987, Midlands Technical College (MTC), in Columbia, South Carolina, initiated a Computer Integrated Manufacturing (CIM) project, the Midlands Teaching Factory, LTD, which integrated various college departments with the goal of manufacturing a high quality, saleable product. The faculty developed a teaching factory model which was designed to…

  7. CAD/CAM Program Development Study Project Report.

    ERIC Educational Resources Information Center

    Program Management Associates, Springfield, IL.

    Predictions are made based on a study of developments in computer integrated manufacturing (CIM) regarding how they will have an impact on employment, skills needed by Illinois aspirants to manufacturing employment, and the training modes that can be employed most effectively. The report first discusses economic benefits in terms of cost and time…

  8. 76 FR 26794 - Funding Opportunity Title: Notice of Funds Availability (NOFA) Inviting Applications for the FY...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-05-09

    ... Communities. CIMS is accessed through myCDFIFund and contains step-by-step instructions on how to create and... set forth in further detail in the application. Please note that, pursuant to OMB guidance (68 FR... multi-step registration process. Applicants are encouraged to allow at least two to three weeks...

  9. Trigonocranus emmeae Fieber, 1876 (Hemiptera, Fulgoromorpha, Cixiidae) - a new species for Poland.

    PubMed

    Musik, Krzysztof; Walczak, Marcin; Depa, Lukasz; Lukasz Junkiert; Anna Jedynowicz

    2013-01-01

    Single macropterous female of Trigonocranus emmeae Fieber, 1876 has been found during the faunistic studies in semi-natural plant communities of Oświęcim city in southern Poland. It is the first record of this species in Poland. Trigonocranus emmeae is rarely collected within the wide range of its distribution, mostly due to its hidden life mode. PMID:24039522

  10. Trigonocranus emmeae Fieber, 1876 (Hemiptera, Fulgoromorpha, Cixiidae) – a new species for Poland

    PubMed Central

    Musik, Krzysztof; Walczak, Marcin; Depa, Łukasz; Łukasz Junkiert; Anna Jedynowicz

    2013-01-01

    Abstract Single macropterous female of Trigonocranus emmeae Fieber, 1876 has been found during the faunistic studies in semi-natural plant communities of Oświęcim city in southern Poland. It is the first record of this species in Poland. Trigonocranus emmeae is rarely collected within the wide range of its distribution, mostly due to its hidden life mode. PMID:24039522

  11. The New American High School.

    ERIC Educational Resources Information Center

    Marsh, David D., Ed.; Codding, Judy B., Ed.

    This book proposes strategies for improving high schools based on high standards, particularly the idea of the Certificate of Initial Mastery (CIM), and discusses changes necessary to ensure that all students attain mastery. Part 1, "Where We Are and Where We Ought to Be," contains two chapters. In "Just Passing Through: The Life of an American…

  12. 28 CFR 524.71 - Responsibility.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 28 Judicial Administration 2 2010-07-01 2010-07-01 false Responsibility. 524.71 Section 524.71... TRANSFER CLASSIFICATION OF INMATES Central Inmate Monitoring (CIM) System § 524.71 Responsibility... institutional level, and the Community Corrections Manager shall assume these responsibilities for...

  13. 28 CFR 524.71 - Responsibility.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 28 Judicial Administration 2 2014-07-01 2014-07-01 false Responsibility. 524.71 Section 524.71... TRANSFER CLASSIFICATION OF INMATES Central Inmate Monitoring (CIM) System § 524.71 Responsibility... institutional level, and the Community Corrections Manager shall assume these responsibilities for...

  14. 28 CFR 524.71 - Responsibility.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 28 Judicial Administration 2 2011-07-01 2011-07-01 false Responsibility. 524.71 Section 524.71... TRANSFER CLASSIFICATION OF INMATES Central Inmate Monitoring (CIM) System § 524.71 Responsibility... institutional level, and the Community Corrections Manager shall assume these responsibilities for...

  15. 78 FR 72088 - Statement of Organization, Functions, and Delegations of Authority

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-02

    ..., Functions, and Delegations of Authority of the Department of Health and Human Services (45 FR 67772-76, dated October 14, 1980, and corrected at 45 FR 69296, October 20, 1980, as amended most recently at 78 FR 58309, dated September 23, 2013) is amended to reflect the title change for the CIMS...

  16. Mapping small-effect and linked quantitative trait loci for complex traits in backcross or DH populations via a multi-locus GWAS methodology

    PubMed Central

    Wang, Shi-Bo; Wen, Yang-Jun; Ren, Wen-Long; Ni, Yuan-Li; Zhang, Jin; Feng, Jian-Ying; Zhang, Yuan-Ming

    2016-01-01

    Composite interval mapping (CIM) is the most widely-used method in linkage analysis. Its main feature is the ability to control genomic background effects via inclusion of co-factors in its genetic model. However, the result often depends on how the co-factors are selected, especially for small-effect and linked quantitative trait loci (QTL). To address this issue, here we proposed a new method under the framework of genome-wide association studies (GWAS). First, a single-locus random-SNP-effect mixed linear model method for GWAS was used to scan each putative QTL on the genome in backcross or doubled haploid populations. Here, controlling background via selecting markers in the CIM was replaced by estimating polygenic variance. Then, all the peaks in the negative logarithm P-value curve were selected as the positions of multiple putative QTL to be included in a multi-locus genetic model, and true QTL were automatically identified by empirical Bayes. This called genome-wide CIM (GCIM). A series of simulated and real datasets was used to validate the new method. As a result, the new method had higher power in QTL detection, greater accuracy in QTL effect estimation, and stronger robustness under various backgrounds as compared with the CIM and empirical Bayes methods. PMID:27435756

  17. Cassini Information Management System in Distributed Operations Collaboration and Cassini Science Planning

    NASA Technical Reports Server (NTRS)

    Equils, Douglas J.

    2008-01-01

    Launched on October 15, 1997, the Cassini-Huygens spacecraft began its ambitious journey to the Saturnian system with a complex suite of 12 scientific instruments, and another 6 instruments aboard the European Space Agencies Huygens Probe. Over the next 6 1/2 years, Cassini would continue its relatively simplistic cruise phase operations, flying past Venus, Earth, and Jupiter. However, following Saturn Orbit Insertion (SOI), Cassini would become involved in a complex series of tasks that required detailed resource management, distributed operations collaboration, and a data base for capturing science objectives. Collectively, these needs were met through a web-based software tool designed to help with the Cassini uplink process and ultimately used to generate more robust sequences for spacecraft operations. In 2001, in conjunction with the Southwest Research Institute (SwRI) and later Venustar Software and Engineering Inc., the Cassini Information Management System (CIMS) was released which enabled the Cassini spacecraft and science planning teams to perform complex information management and team collaboration between scientists and engineers in 17 countries. Originally tailored to help manage the science planning uplink process, CIMS has been actively evolving since its inception to meet the changing and growing needs of the Cassini uplink team and effectively reduce mission risk through a series of resource management validation algorithms. These algorithms have been implemented in the web-based software tool to identify potential sequence conflicts early in the science planning process. CIMS mitigates these sequence conflicts through identification of timing incongruities, pointing inconsistencies, flight rule violations, data volume issues, and by assisting in Deep Space Network (DSN) coverage analysis. In preparation for extended mission operations, CIMS has also evolved further to assist in the planning and coordination of the dual playback redundancy of

  18. Laboratory and Ambient Measurements of Oxidized Organic Compounds in the Gas Phase Using Nitrate Ion Chemical Ionization Coupled with High Resolution Time-of-Flight Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Massoli, P.; Stark, H.; Canagaratna, M. R.; Krechmer, J.; Lambe, A. T.; Isaacman-VanWertz, G. A.; Nowak, J. B.; Kimmel, J.; Kroll, J. H.; Jayne, J. T.; Worsnop, D. R.

    2015-12-01

    Chemical Ionization Mass Spectrometry (CIMS) is a widely used technique for molecular level characterization of inorganic and organic gas phase species. Here we present laboratory and ambient measurements of gaseous organic compounds by means of a High Resolution Time-of-Flight Chemical Ionization Mass Spectrometry (HR-ToF-CIMS) using nitrate ion (NO3-) chemistry, which recently has proven capable of selectively detecting oxidized organic molecules in the gas-phase via clustering with NO3- and its high order clusters. Such low and extremely low volatility organic compounds (LVOC, ELVOC) have an important role in particulate phase chemistry and formation of secondary organic aerosol (SOA). The HR-ToF-CIMS was deployed during the Southern Oxidant and Aerosol Study (SOAS) at the forest site in Centreville, AL (June 1 - July 15, 2013), where emissions were dominated by biogenic volatile organic compounds (BVOC), occasionally mixing with anthropogenic emissions. During SOAS, the HR-ToF-CIMS detected oxidation products of both isoprene (typically C5 LVOC) and terpenes (typically C10 ELVOC). The isoprene-related LVOC showed a diurnal cycle with a day time peak, while two groups of terpene ELVOC were identified, one peaking at night and one peaking during the day. Positive Matrix Factorization (PMF) analyses are applied to the dataset to further interpret these observations. The effect of anthropogenic pollution on the biogenic-dominated environment was also investigated during periods of elevated nitrous and sulfur dioxide levels. To further aid in interpretation of the SOAS dataset, oxidized organic molecules were produced via OH and O3 initiated oxidation of biogenic gas-phase precursors in targeted laboratory studies and detected using the HR-ToF-CIMS. Spectra were obtained in these studies over a range of simulated atmospheric conditions.

  19. Chemistry of α-pinene and naphthalene oxidation products generated in a Potential Aerosol Mass (PAM) chamber as measured by acetate chemical ionization mass spectrometry

    DOE PAGESBeta

    Chhabra, P. S.; Lambe, A. T.; Canagaratna, M. R.; Stark, H.; Jayne, J. T.; Onasch, T. B.; Davidovits, P.; Kimmel, J. R.; Worsnop, D. R.

    2014-07-01

    Recent developments in high resolution, time-of-flight chemical ionization mass spectrometry (HR-ToF-CIMS) have made possible the direct detection of atmospheric organic compounds in real-time with high sensitivity and with little or no fragmentation, including low volatility, highly oxygenated organic vapors that are precursors to secondary organic aerosol formation. Here, for the first time, we examine gas-phase O3 and OH oxidation products of α-pinene and naphthalene formed in the PAM flow reactor with an HR-ToF-CIMS using acetate reagent ion chemistry. Integrated OH exposures ranged from 1.2 × 1011 to 9.7 × 1011 molec cm−3 s, corresponding to approximately 1.0 to 7.5 daysmore » of equivalent atmospheric oxidation. Measured gas-phase organic acids are similar to those previously observed in environmental chamber studies. For both precursors, we find that acetate-CIMS spectra capture both functionalization (oxygen addition) and fragmentation (carbon loss) as a function of OH exposure. The level of fragmentation is observed to increase with increased oxidation. We present a method that estimates vapor pressures of organic molecules using the measured O/C ratio, H/C ratio, and carbon number for each compound detected by the CIMS. The predicted condensed-phase SOA average acid yields and O/C and H/C ratios agree within uncertainties with previous AMS measurements and ambient CIMS results. While acetate reagent ion chemistry is used to selectively measure organic acids, in principle this method can be applied to additional reagent ion chemistries depending on the application.« less

  20. SU-D-BRD-04: A Logical Organizational Approach to Clinical Information Management

    SciTech Connect

    Shao, W; Kupelian, P; Wang, J; Low, D; Ruan, D

    2014-06-01

    Purpose: To develop a clinical information management system (CIMS) that collects, organizes physician inputs logically and supports analysis functionality. Methods: In a conventional electronic medical record system (EMR), the document manager component stores data in a pool of standalone .docx or .pdf files. The lack of a content-based logical organization makes cross-checking, reference or automatic inheritance of information challenging. We have developed an information-oriented clinical record system that addresses this shortcoming. In CIMS, a parent library predefines a set of available questions along with the data types of their expected answers. The creation of a questionnaire template is achieved by selecting questions from this parent library to form a virtual group. Instances of the same data field in different documents are linked by their question identifier. This design allows for flexible data sharing and inheritance among various forms using a longitudinal lineage of data indexed according to the modification time stamps of the documents. CIMS is designed with a web portal to facilitate querying, data entry and modification, aggregate report generation, and data adjudication. The current implementation addresses diagnostic data, medical history, vital signs, and various quantities in consult note and treatment summaries. Results: CIMS is currently storing treatment summary information of over 1,000 patients who have received treatment at UCLA Radiation Oncology between March 1, 2013 and January 31, 2014. We are in the process of incorporating a DICOM-RT dosimetry parser and patient reporting applications into CIMS, as well as continuing to define document templates to support additional forms. Conclusion: We are able to devise an alternative storage paradigm which results in an improvement in the accuracy and organizational structure of clinical information.

  1. Effect of dimethylamine on the gas phase sulfuric acid concentration measured by Chemical Ionization Mass Spectrometry

    PubMed Central

    Ehrhart, S.; Kürten, A.; Adamov, A.; Bianchi, F.; Breitenlechner, M.; Duplissy, J.; Franchin, A.; Dommen, J.; Donahue, N. M.; Dunne, E. M.; Flagan, R. C.; Hakala, J.; Hansel, A.; Keskinen, H.; Kim, J.; Jokinen, T.; Lehtipalo, K.; Leiminger, M.; Praplan, A.; Riccobono, F.; Rissanen, M. P.; Sarnela, N.; Schobesberger, S.; Simon, M.; Sipilä, M.; Smith, J. N.; Tomé, A.; Tröstl, J.; Tsagkogeorgas, G.; Vaattovaara, P.; Winkler, P. M.; Williamson, C.; Wimmer, D.; Baltensperger, U.; Kirkby, J.; Kulmala, M.; Petäjä, T.; Worsnop, D. R.; Curtius, J.

    2016-01-01

    Abstract Sulfuric acid is widely recognized as a very important substance driving atmospheric aerosol nucleation. Based on quantum chemical calculations it has been suggested that the quantitative detection of gas phase sulfuric acid (H2SO4) by use of Chemical Ionization Mass Spectrometry (CIMS) could be biased in the presence of gas phase amines such as dimethylamine (DMA). An experiment (CLOUD7 campaign) was set up at the CLOUD (Cosmics Leaving OUtdoor Droplets) chamber to investigate the quantitative detection of H2SO4 in the presence of dimethylamine by CIMS at atmospherically relevant concentrations. For the first time in the CLOUD experiment, the monomer sulfuric acid concentration was measured by a CIMS and by two CI‐APi‐TOF (Chemical Ionization‐Atmospheric Pressure interface‐Time Of Flight) mass spectrometers. In addition, neutral sulfuric acid clusters were measured with the CI‐APi‐TOFs. The CLOUD7 measurements show that in the presence of dimethylamine (<5 to 70 pptv) the sulfuric acid monomer measured by the CIMS represents only a fraction of the total H2SO4, contained in the monomer and the clusters that is available for particle growth. Although it was found that the addition of dimethylamine dramatically changes the H2SO4 cluster distribution compared to binary (H2SO4‐H2O) conditions, the CIMS detection efficiency does not seem to depend substantially on whether an individual H2SO4 monomer is clustered with a DMA molecule. The experimental observations are supported by numerical simulations based on A Self‐contained Atmospheric chemistry coDe coupled with a molecular process model (Sulfuric Acid Water NUCleation) operated in the kinetic limit. PMID:27610289

  2. Metabolic consequences of chronic intermittent mild stress exposure.

    PubMed

    Thompson, Abigail K; Fourman, Sarah; Packard, Amy E B; Egan, Ann E; Ryan, Karen K; Ulrich-Lai, Yvonne M

    2015-10-15

    Chronic stress in humans has divergent effects on food intake, with some individuals reporting increased vs. decreased food intake during stress. This divergence may depend in part on stress intensity, with higher-intensity stressors preferentially promoting anorexia. Consistent with this idea, rodents given a high-intensity chronic variable stress paradigm have robustly decreased food intake and body weight gain. However, the metabolic effects of a less intense chronic stress paradigm are not clear. Thus in the present study, adult male rats were given chronic intermittent mild stress (CIMS) exposure (3 cycles, in which each cycle consists of once daily mild stress for 5 days/week for 2 weeks, followed by 2 weeks of no stress) vs. non-stress controls, combined with ongoing access to a palatable diet (PD; choice of chow, high-fat diet, 30% sucrose drink, and water) vs. control diet (chow and water). As expected, access to PD increased caloric intake, body weight gain, and adiposity, and impaired glucose tolerance. CIMS decreased body weight gain only during the first cycle of stress and did not affect body weight gain thereafter, regardless of diet. Moreover, CIMS did not alter total food intake, adiposity or glucose tolerance regardless of diet. Lastly, CIMS transiently increased high-fat diet preference in PD-fed rats during the first stress cycle. Collectively, these results suggest that CIMS has relatively modest metabolic effects that occur primarily during initial stress exposure. These results support the hypothesis that the metabolic consequences of chronic stress vary with stress intensity and/or frequency. PMID:25711718

  3. Effect of dimethylamine on the gas phase sulfuric acid concentration measured by Chemical Ionization Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Rondo, L.; Ehrhart, S.; Kürten, A.; Adamov, A.; Bianchi, F.; Breitenlechner, M.; Duplissy, J.; Franchin, A.; Dommen, J.; Donahue, N. M.; Dunne, E. M.; Flagan, R. C.; Hakala, J.; Hansel, A.; Keskinen, H.; Kim, J.; Jokinen, T.; Lehtipalo, K.; Leiminger, M.; Praplan, A.; Riccobono, F.; Rissanen, M. P.; Sarnela, N.; Schobesberger, S.; Simon, M.; Sipilä, M.; Smith, J. N.; Tomé, A.; Tröstl, J.; Tsagkogeorgas, G.; Vaattovaara, P.; Winkler, P. M.; Williamson, C.; Wimmer, D.; Baltensperger, U.; Kirkby, J.; Kulmala, M.; Petäjä, T.; Worsnop, D. R.; Curtius, J.

    2016-03-01

    Sulfuric acid is widely recognized as a very important substance driving atmospheric aerosol nucleation. Based on quantum chemical calculations it has been suggested that the quantitative detection of gas phase sulfuric acid (H2SO4) by use of Chemical Ionization Mass Spectrometry (CIMS) could be biased in the presence of gas phase amines such as dimethylamine (DMA). An experiment (CLOUD7 campaign) was set up at the CLOUD (Cosmics Leaving OUtdoor Droplets) chamber to investigate the quantitative detection of H2SO4 in the presence of dimethylamine by CIMS at atmospherically relevant concentrations. For the first time in the CLOUD experiment, the monomer sulfuric acid concentration was measured by a CIMS and by two CI-APi-TOF (Chemical Ionization-Atmospheric Pressure interface-Time Of Flight) mass spectrometers. In addition, neutral sulfuric acid clusters were measured with the CI-APi-TOFs. The CLOUD7 measurements show that in the presence of dimethylamine (<5 to 70 pptv) the sulfuric acid monomer measured by the CIMS represents only a fraction of the total H2SO4, contained in the monomer and the clusters that is available for particle growth. Although it was found that the addition of dimethylamine dramatically changes the H2SO4 cluster distribution compared to binary (H2SO4-H2O) conditions, the CIMS detection efficiency does not seem to depend substantially on whether an individual H2SO4 monomer is clustered with a DMA molecule. The experimental observations are supported by numerical simulations based on A Self-contained Atmospheric chemistry coDe coupled with a molecular process model (Sulfuric Acid Water NUCleation) operated in the kinetic limit.

  4. Quantifying consistency and biases between aircraft, balloon and remote sensing measurements of UT/LS water vapor during the WB-57 NASA MACPEX mission

    NASA Astrophysics Data System (ADS)

    Gao, R.; Rollins, A.; Thornberry, T. D.; Hall, E.; Jordan, A.; Hurst, D. F.; Smith, J. B.; Sargent, M. R.; Fahey, D. W.

    2011-12-01

    Mixing ratios of water vapor in Earth's upper troposphere and lower stratosphere (UT/LS) are low (< 10 ppmv), yet water in this region is a significant driver of climate. Significant discrepancies have repeatedly been observed between multiple high precision measurements of water vapor at these low values in the UT/LS, leading to uncertainty in the absolute value of the direct radiative forcing from stratospheric water vapor. During the NASA Mid-latitude Airborne Cirrus Properties Experiment (MACPEX) mission in March and April of 2011, measurements of water vapor in the UT/LS were made using the NOAA chemical ionization mass spectrometer (CIMS) and Harvard Lyman-α water vapor (HWV) instruments integrated on the NASA WB-57 based out of Ellington Field, TX. This was the first aircraft deployment of the CIMS instrument configured to measure water vapor. The CIMS carried a novel in situ calibration system using two independent water vapor standards that were in excellent agreement throughout the campaign. CIMS was also in excellent agreement with HWV, which operates and is calibrated using fundamentally different principles. The redundant and independent calibration systems of CIMS and HWV afford new confidence in the accuracy of these aircraft measurements. We compare these aircraft measurements of water vapor to those made with the MLS instrument on the AURA satellite, and to frost point balloon borne (NOAA FPH and CFH) measurements coordinated with the WB-57 descents from the LS. A persistent bias of 0.7 ppmv is observed between the frost point and aircraft measurements in the 3 to 10 ppmv range, with frost point being lower. The MLS measurements are less precise, but generally fall between the balloon and aircraft measurements in the LS. These measurements renew interest in comparisons in the tropics where even lower mixing ratios and higher saturations with respect to ice are encountered.

  5. Developing a Common Information Model for climate models and data

    NASA Astrophysics Data System (ADS)

    Valcke, S.; Balaji, V.; Bentley, P.; Guilyardi, E.; Lawrence, B.; Pascoe, C.; Steenman-Clark, L.; Toussaint, F.; Treshansky, A.

    2009-04-01

    The Metafor project, funded under the EU Framework Programme 7, proposes a Common Information Model (CIM) to describe in a standard way climate data and the models and modelling environments that produced this data. To establish the CIM, Metafor first considered the metadata models developed by other groups engaged in similar efforts in Europe and worlwide, such as the US Earth System Curator, explored fragmentation and gaps as well as duplication of information present in these metadata models, and reviewed current problems in identifying, accessing or using climate data present in existing repositories. Based on this analysis and on different use cases, the first version of the CIM is composed of 5 packages. The "data" package is used to describe the data objects that can be collected and stored in any number of ways; the "activity" package details the simulations and experiments and related requirements that were performed with numerical (possibly coupled) models described with the "software" packages. Both data and models can be associated with numerical grids represented by the "grid" package and finally the "shared" package gathers concepts shared among the other packages. The CIM is defined and implemented in the Unified Modelling Language (UML) and application schema have been generated in XML schema. Aiming at a wide adoption of the CIM, Metafor will optimize the way climate data infrastructures are used to store knowledge, thereby adding value to primary research data and information, and providing an essential asset for the numerous stakeholders actively engaged in climate change issues (policy, research, impacts, mitigation, private sector).

  6. Editorial

    NASA Astrophysics Data System (ADS)

    Gill, Eberhard

    2016-06-01

    This Special Section of Acta Astronautica is a collection of selected peer reviewed papers presented at the eighth International Workshop on Satellite Constellations and Formation Flying (IWSCFF). The event was, as its predecessors, organized by the Astrodynamics Committee of the International Astronautical Federation (IAF) with the objective to bring together specialists in the area of astrodynamics and space mission analysis and design and to promote discussions on lessons from past missions, to present recent results, and to address challenges for future space missions. The Workshop was held at the Faculty of Aerospace Engineering of the Delft University of Technology from June 8-10, 2015. The Workshop was coordinated by its Chairs Eberhard Gill (The Netherlands) and Alfred Ng (Canada) with support from the recently established TU Delft Space Institute, an extended International Program Committee, a Local Organizing Committee and a variety of industrial and institutional sponsors.

  7. Still going strong: Leeuwenhoek at eighty.

    PubMed

    Anderson, Douglas

    2014-07-01

    At age 80, Antony van Leeuwenhoek was a world-famous scientist who came from a prosperous Delft family with a heritage of public service. He continued that tradition by serving in paid municipal offices. Self-taught, he began his scientific career in his 40s, when he began making hundreds of tiny single-lens microscopes. Pioneering the use of now-common microscopic techniques, he was the first human to see microbes and microscopic structures in animals, plants, and minerals. Over 50 years, he wrote only letters, more than 300 of them, and published half of them himself. More than a hundred were published in translation in the Royal Society's Philosophical Transactions. Today, Leeuwenhoek is considered in the lesser rank of scientists and is not well known outside of his homeland. Recent archival research in Delft has contributed new information about his life that helps to contextualize his science, but much remains to be learned. PMID:24682589

  8. [Evaluation of carbapenem inactivation method for the identification of carbapenemase-producing Enterobacteriaceae strains].

    PubMed

    Bayramoğlu, Gülçin; Uluçam, Gülşen; Gençoğlu Özgür, Çiğdem

    2016-07-01

    The rapid and accurate identification of carbapenemases is of crucial importance in terms of infection control. Methods employed in the determination of carbapenemases should be constantly updated in the light of technical advances and newly emerging carbapenemase variants. The aim of this study was to evaluate the performance of the newly developed carbapenem inactivation method (CIM) for the identification of carbapenemases defined in the members of the family Enterobacteriaceae. Enterobacteriaceae isolates with resistance to at least one of the carbapenems (ertapenem, imipenem or meropenem) were included in the study. The study isolates were obtained from various clinical specimens between 2008-2014 and consisted of 56 Enterobacteriaceae strains (12 Escherichia coli, 32 Klebsiella spp., and 12 Enterobacter spp.) in which the presence of the 38 blaOXA-48, 8 blaVIM, 7 blaIMP, 1 blaNDM-1, 1 blaKPC-2 and 1 blaOXA-48+blaVIM genes had been previously determined using the polymerase chain reaction (PCR) and 78 in which no carbapenemase gene were detected. For the performance of the CIM, the test bacteria were suspended in sterile water and then a 10 μg meropenem disc was immersed in the suspension and incubated for 2 hours. This meropenem disc was then removed and subsequently placed on a Mueller-Hinton agar plate inoculated with E. coli ATCC 29522 and incubated at 35°C. The results were assessed after 6 hours and after overnight incubation. Development of an inhibition zone around the meropenem disk was interpreted as the absence of carbapenemase and the lack of an inhibition zone as the presence of carbapenemase. The results of the CIM were obtained after 8 hours. With the CIM, all isolates with previously determined carbapenemase genes were found to be positive and the isolates with no genes revealed to be negative. The sensitivity and specificity of CIM were estimated as 100%. The high sensitivity and specificity, ease of application and interpretation, rapid

  9. Patient-Provider Interactions Affect Symptoms in Gastroesophageal Reflux Disease: A Pilot Randomized, Double-Blind, Placebo-Controlled Trial

    PubMed Central

    Dossett, Michelle L.; Mu, Lin; Davis, Roger B.; Bell, Iris R.; Lembo, Anthony J.; Kaptchuk, Ted J.; Yeh, Gloria Y.

    2015-01-01

    Background It is unclear whether the benefits that some patients derive from complementary and integrative medicine (CIM) are related to the therapies recommended or to the consultation process as some CIM provider visits are more involved than conventional medical visits. Many patients with gastrointestinal conditions seek out CIM therapies, and prior work has demonstrated that the quality of the patient-provider interaction can improve health outcomes in irritable bowel syndrome, however, the impact of this interaction on gastroesophageal reflux disease (GERD) is unknown. We aimed to assess the safety and feasibility of conducting a 2x2 factorial design study preliminarily exploring the impact of the patient-provider interaction, and the effect of an over-the-counter homeopathic product, Acidil, on symptoms and health-related quality of life in subjects with GERD. Methods 24 subjects with GERD-related symptoms were randomized in a 2x2 factorial design to receive 1) either a standard visit based on an empathic conventional primary care evaluation or an expanded visit with questions modeled after a CIM consultation and 2) either Acidil or placebo for two weeks. Subjects completed a daily GERD symptom diary and additional measures of symptom severity and health-related quality of life. Results There was no significant difference in GERD symptom severity between the Acidil and placebo groups from baseline to follow-up (p = 0.41), however, subjects who received the expanded visit were significantly more likely to report a 50% or greater improvement in symptom severity compared to subjects who received the standard visit (p = 0.01). Total consultation length, perceived empathy, and baseline beliefs in CIM were not associated with treatment outcomes. Conclusion An expanded patient-provider visit resulted in greater GERD symptom improvement than a standard empathic medical visit. CIM consultations may have enhanced placebo effects, and further studies to assess the

  10. The influence of social networks on self-management support: a metasynthesis

    PubMed Central

    2014-01-01

    Background There is increasing recognition that chronic illness management (CIM) is not just an individual but a collective process where social networks can potentially make a considerable contribution to improving health outcomes for people with chronic illness. However, the mechanisms (processes, activities) taking place within social networks are insufficiently understood. The aim of this review was to focus on identifying the mechanisms linking social networks with CIM. Here we consider network mechanisms as located within a broader social context that shapes practices, behaviours, and the multiplicity of functions and roles that network members fulfil. Methods A systematic search of qualitative studies was undertaken on Medline, Embase, and Web for papers published between 1st January 2002 and 1st December 2013. Eligible for inclusion were studies dealing with diabetes, and with conditions or health behaviours relevant for diabetes management; and studies exploring the relationship between social networks, self-management, and deprivation. 25 papers met the inclusion criteria. A qualitative metasynthesis was undertaken and the review followed a line of argument synthesis. Results The main themes identified were: 1) sharing knowledge and experiences in a personal community; 2) accessing and mediation of resources; 3) self-management support requires awareness of and ability to deal with network relationships. These translated into line of argument synthesis in which three network mechanisms were identified. These were network navigation (identifying and connecting with relevant existing resources in a network), negotiation within networks (re-shaping relationships, roles, expectations, means of engagement and communication between network members), and collective efficacy (developing a shared perception and capacity to successfully perform behaviour through shared effort, beliefs, influence, perseverance, and objectives). These network mechanisms bring to the

  11. Altered sodium channel-protein associations in critical illness myopathy

    PubMed Central

    2012-01-01

    Background During the acute phase of critical illness myopathy (CIM) there is inexcitability of skeletal muscle. In a rat model of CIM, muscle inexcitability is due to inactivation of sodium channels. A major contributor to this sodium channel inactivation is a hyperpolarized shift in the voltage dependence of sodium channel inactivation. The goal of the current study was to find a biochemical correlate of the hyperpolarized shift in sodium channel inactivation. Methods The rat model of CIM was generated by cutting the sciatic nerve and subsequent injections of dexamethasone for 7 days. Skeletal muscle membranes were prepared from gastrocnemius muscles, and purification and biochemical analyses carried out. Immunoprecipitations were performed with a pan-sodium channel antibody, and the resulting complexes probed in Western blots with various antibodies. Results We carried out analyses of sodium channel glycosylation, phosphorylation, and association with other proteins. Although there was some loss of channel glycosylation in the disease, as assessed by size analysis of glycosylated and de-glycosylated protein in control and CIM samples, previous work by other investigators suggest that such loss would most likely shift channel inactivation gating in a depolarizing direction; thus such loss was viewed as compensatory rather than causative of the disease. A phosphorylation site at serine 487 was identified on the NaV 1.4 sodium channel α subunit, but there was no clear evidence of altered phosphorylation in the disease. Co-immunoprecipitation experiments carried out with a pan-sodium channel antibody confirmed that the sodium channel was associated with proteins of the dystrophin associated protein complex (DAPC). This complex differed between control and CIM samples. Syntrophin, dystrophin, and plectin associated strongly with sodium channels in both control and disease conditions, while β-dystroglycan and neuronal nitric oxide synthase (nNOS) associated

  12. DORIS Satellite Phase Center Determination and Consequences on the Derived Scale of the Terrestrial Reference Frame

    NASA Technical Reports Server (NTRS)

    Willis, Pascal R.; Haines, Bruce; Kuang, Da

    2006-01-01

    This slide presentation reports on the analysis of several years of Delft Object-oriented Radar Interferometric Software (Doris) data undertaken to estimate daily determination of satellite antenna phase center corrections. This was done on a satellite by satellite basis. For each DORIS satellite, we considered long-term time series of such individual estimations, looking for possible biases, discontinuities, trends or annual signals. The analysis compared DORIS to GPS estimates for common satellites (Jason and TOPEX/Poseidon).

  13. Coastal mapping and modelling of Tuktoyaktuk Harbour, Western Arctic, Canada

    NASA Astrophysics Data System (ADS)

    Manson, G. K.

    2015-12-01

    Climate models suggest that sea ice in the Arctic is expected to decrease and that the frequency of storms bringing high waves and storm surges is expected to increase. Reduced sea ice, higher waves, and higher storm surge water levels have implications for coastal infrastructure, nearshore sediment transport, and rates of coastal change. Tuktoyaktuk is an important shipping terminal servicing the petroleum industry and Inuvialuit communities in the western Canadian Arctic. The hydrodynamic model Delft3D is used to model sediment transport in Tuktoyaktuk Harbour and the approaches. For nearshore applications, Delft3D works best with a seamless coastal digital elevation model (DEM). A DEM was constructed from a variety of sources. Terrestrial LiDAR (Light Detection And Ranging) uses an infrared laser to construct a detailed elevation model of the terrestrial coastal zone. Multibeam bathymetry uses arrays of acoustic signals to collect detailed of the subaqueous coastal zone. Bathymetry data, and charts from the Canadian Hydrographic Service supplement the offshore bathymetry. The shoreline is derived from CanCoast, a nationally consistent geospatial database of Canada's marine coasts. The Coastal Information System (CIS) supplements CanCoast and describes coastal geomorphology in local areas. With these data, Delft3D delivered wave, current, and sediment transport data in a common reference frame. When compared to measurements, the model successfully simulates waves and currents. Output from Delft3D was mapped into a Geographic Information System, and combined with other data to help an Arctic community and industries adapt to potential climate-related hazards .

  14. Single pin BWR benchmark problem for coupled Monte Carlo - Thermal hydraulics analysis

    SciTech Connect

    Ivanov, A.; Sanchez, V.; Hoogenboom, J. E.

    2012-07-01

    As part of the European NURISP research project, a single pin BWR benchmark problem was defined. The aim of this initiative is to test the coupling strategies between Monte Carlo and subchannel codes developed by different project participants. In this paper the results obtained by the Delft Univ. of Technology and Karlsruhe Inst. of Technology will be presented. The benchmark problem was simulated with the following coupled codes: TRIPOLI-SUBCHANFLOW, MCNP-FLICA, MCNP-SUBCHANFLOW, and KENO-SUBCHANFLOW. (authors)

  15. In-orbit results of Delfi-n3Xt: Lessons learned and move forward

    NASA Astrophysics Data System (ADS)

    Guo, Jian; Bouwmeester, Jasper; Gill, Eberhard

    2016-04-01

    This paper provides an update of the Delfi nanosatellite programme of the Delft University of Technology (TU Delft), with a focus on the recent in-orbit results of the second TU Delft satellite Delfi-n3Xt. In addition to the educational objective that has been reached with more than 80 students involved in the project, most of the technological objectives of Delfi-n3Xt have also been fulfilled with successful in-orbit demonstrations of payloads and platform. Among these demonstrations, four are highlighted in this paper, including a solid cool gas micropropulsion system, a new type of solar cell, a more robust Command and Data Handling Subsystem (CDHS), and a highly integrated Attitude Determination and Control Subsystem (ADCS) that performs three-axis active control using reaction wheels. Through the development of Delfi-n3Xt, significant experiences and lessons have been learned, which motivated a further step towards DelFFi, the third Delfi CubeSat mission, to demonstrate autonomous formation flying using two CubeSats named Delta and Phi. A brief update of the DelFFi mission is also provided.

  16. Apparent Diffusion Coefficient Scalars Correlate with Near-Infrared Spectroscopy Markers of Cerebrovascular Autoregulation in Neonates Cooled for Perinatal Hypoxic-Ischemic Injury

    PubMed Central

    Tekes, A.; Poretti, A.; Scheurkogel, M.M.; Huisman, T.A.G.M.; Howlett, J.A.; Alqahtani, E.; Lee, J.-H.; Parkinson, C.; Shapiro, K.; Chung, S.-E.; Jennings, J.M.; Gilmore, M.M.; Hogue, C.W.; Martin, L.J.; Koehler, R.C.; Northington, F.J.; Lee, J.K.

    2015-01-01

    BACKGROUNDANDPURPOSE Neurologic morbidity remains high in neonates with perinatal hypoxic-ischemic injury despite therapeutic hypothermia. DTI provides qualitative and quantitative information about the microstructure of the brain, and a near-infrared spectroscopy index can assess cerebrovascular autoregulation. We hypothesized that lower ADC values would correlate with worse autoregulatory function. MATERIALSANDMETHODS Thirty-one neonates with hypoxic-ischemic injury were enrolled. ADC scalars were measured in 27 neonates (age range, 4–15 days) in the anterior and posterior centrum semiovale, basal ganglia, thalamus, posterior limb of the internal capsule, pons, and middle cerebellar peduncle on MRI obtained after completion of therapeutic hypothermia. The blood pressure range of each neonate with the most robust autoregulation was identified by using a near-infrared spectroscopy index. Autoregulatory function was measured by blood pressure deviation below the range with optimal autoregulation. RESULTS In neonates who had MRI on day of life ≥10, lower ADC scalars in the posterior centrum semiovale (r = −0.87, P = .003, n = 9) and the posterior limb of the internal capsule (r = −0.68, P = .04, n = 9) correlated with blood pressure deviation below the range with optimal autoregulation during hypothermia. Lower ADC scalars in the basal ganglia correlated with worse autoregulation during rewarming (r = −0.71, P = .05, n = 8). CONCLUSIONS Blood pressure deviation from the optimal autoregulatory range may be an early biomarker of injury in the posterior centrum semiovale, posterior limb of the internal capsule, and basal ganglia. Optimizing blood pressure to support autoregulation may decrease the risk of brain injury in cooled neonates with hypoxic-ischemic injury. PMID:25169927

  17. Revised Vertebral Count in the “Longest-Necked Vertebrate” Elasmosaurus platyurus Cope 1868, and Clarification of the Cervical-Dorsal Transition in Plesiosauria

    PubMed Central

    Sachs, Sven; Kear, Benjamin P.; Everhart, Michael J.

    2013-01-01

    Elasmosaurid plesiosaurians are renowned for their immensely long necks, and indeed, possessed the highest number of cervical vertebrae for any known vertebrate. Historically, the largest count has been attributed to the iconic Elasmosaurus platyurus from the Late Cretaceous of Kansas, but estimates for the total neck series in this taxon have varied between published reports. Accurately determining the number of vertebral centra vis-à-vis the maximum length of the neck in plesiosaurians has significant implications for phylogenetic character designations, as well as the inconsistent terminology applied to some osteological structures. With these issues in mind, we reassessed the holotype of E. platyurus as a model for standardizing the debated cervical-dorsal transition in plesiosaurians, and during this procedure, documented a “lost” cervical centrum. Our revision also advocates retention of the term “pectorals” to describe the usually three or more distinctive vertebrae close to the cranial margin of the forelimb girdle that bear a functional rib facet transected by the neurocentral suture, and thus conjointly formed by both the parapophysis on the centrum body and diapophysis from the neural arch (irrespective of rib length). This morphology is unambiguously distinguishable from standard cervicals, in which the functional rib facet is borne exclusively on the centrum, and dorsals in which the rib articulation is situated above the neurocentral suture and functionally borne only by the transverse process of the neural arch. Given these easily distinguishable definitions, the maximum number of neck vertebrae preserved in E. platyurus is 72; this is only three vertebrae shorter than the recently described Albertonectes, which together with E. platyurus constitute the “longest necked” animals ever to have lived. PMID:23940656

  18. Vertebral Development in Paleozoic and Mesozoic Tetrapods Revealed by Paleohistological Data

    PubMed Central

    Danto, Marylène; Witzmann, Florian; Fröbisch, Nadia B.

    2016-01-01

    Basal tetrapods display a wide spectrum of vertebral centrum morphologies that can be used to distinguish different tetrapod groups. The vertebral types range from multipartite centra in stem-tetrapods, temnospondyls, and seymouriamorphs up to monospondylous centra in lepospondyls and have been drawn upon for reconstructing major evolutionary trends in tetrapods that are now considered textbook knowledge. Two modes of vertebral formation have been postulated: the multipartite vertebrae formed first as cartilaginous elements with subsequent ossification. The monospondylous centrum, in contrast, was formed by direct ossification without a cartilaginous precursor. This study describes centrum morphogenesis in basal tetrapods for the first time, based on bone histology. Our results show that the intercentra of the investigated stem-tetrapods consist of a small band of periosteal bone and a dense network of endochondral bone. In stereospondyl temnospondyls, high amounts of calcified cartilage are preserved in the endochondral trabeculae. Notably, the periosteal region is thickened and highly vascularized in the plagiosaurid stereospondyls. Among “microsaur” lepospondyls, the thickened periosteal region is composed of compact bone and the notochordal canal is surrounded by large cell lacunae. In nectridean lepospondyls, the periosteal region has a spongy structure with large intertrabecular spaces, whereas the endochondral region has a highly cancellous structure. Our observations indicate that regardless of whether multipartite or monospondylous, the centra of basal tetrapods display first endochondral and subsequently periosteal ossification. A high interspecific variability is observed in growth rate, organization, and initiation of periosteal ossification. Moreover, vertebral development and structure reflect different lifestyles. The bottom-dwelling Plagiosauridae increase their skeletal mass by hyperplasy of the periosteal region. In nectrideans, the skeletal

  19. Comprehensive NO-dependent study of the products of the oxidation of atmospherically relevant aromatic compounds.

    PubMed

    Birdsall, Adam W; Elrod, Matthew J

    2011-06-01

    A comprehensive product study, performed via the turbulent flow chemical ionization mass spectrometry (TF-CIMS) technique, of the primary OH-initiated oxidation of many of the atmospherically abundant aromatic compounds was performed. The bicyclic peroxy radical intermediate, a key proposed intermediate species in the Master Chemical Mechanism (MCM) for the atmospheric oxidation of aromatics, was detected in all cases, as were stable bicyclic species. The NO product yield dependences suggest a potential role for bicyclic peroxy radical + HO(2) reactions at high HO(2)/NO ratios, which are postulated to be a possible source of the inconsistencies between previous environmental chamber results and predictions from the MCM for ozone production and OH reactivity. The TF-CIMS product yield results are also compared to previous environment chamber results and to the latest MCM parametrization. PMID:21553858

  20. Continuous Underway Seawater Measurements of Biogenic Volatile Organic Compounds in the Western Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    Zoerb, M.; Kim, M.; Bertram, T. H.

    2014-12-01

    The products of isoprene and terpene oxidation have been shown to contribute significantly to secondary aerosol production rates over continental regions, where the emission rates have been well characterized. Significantly less is known about the emission of isoprene and monoterpenes from marine sources. We discuss the development of a chemical ionization mass spectrometer (CIMS) employing benzene reagent ion chemistry for the selective detection of biogenic volatile organic compounds. The CIMS was coupled to a seawater equilibrator for the measurement of dissolved gases in surface seawater. This system was deployed aboard the R/V Knorr during the Western Atlantic Climate Study II in Spring 2014. Here, we report surface seawater (5 m depth) concentrations of dimethyl sulfide, isoprene, and alpha-pinene. The concentration measurements are discussed in terms of surface seawater temperature, nutrient availability, and primary productivity.

  1. Kinetics Studies of the Photochemistry of Isoprene-derived 4,1-nitrooxyaldehyde

    NASA Astrophysics Data System (ADS)

    Xiong, F.; Shepson, P. B.

    2015-12-01

    In the boundary layer environments influenced by BVOC emissions, carbonyl nitrates are produced from NO3-initiated isoprene oxidation, which constitutes a potentially important NOx reservoir. The formation and degradation processes of organic nitrates affect the dynamics of reactive nitrogen and ground-level ozone. To better understand the fate of these organic nitrates, the isomer 4-nitrooxy-2-methyl-2-buten-1-al (4,1-nitrooxyaldehyde) was synthesized for photochemical reaction chamber experiments. The rate constants for reaction of this species with O3 and OH, as well as its photolysis rate were determined. A chemical ionization mass spectrometer (CIMS) with I(H2O)n- as the reagent ion was used to monitor the loss of isoprene nitrooxyaldehyde and formation of its oxidation products. Possible reaction pathways are discussed based on the CIMS measurements.

  2. Quantification of hydroxyacetone and glycolaldehyde using chemical ionization mass spectrometry

    NASA Astrophysics Data System (ADS)

    Spencer, K. M.; Beaver, M. R.; St. Clair, J. M.; Crounse, J. D.; Paulot, F.; Wennberg, P. O.

    2011-08-01

    Chemical ionization mass spectrometry (CIMS) enables online, fast, in situ detection and quantification of hydroxyacetone and glycolaldehyde. Two different CIMS approaches are demonstrated employing the strengths of single quadrupole mass spectrometry and triple quadrupole (tandem) mass spectrometry. Both methods are capable of the measurement of hydroxyacetone, an analyte with minimal isobaric interferences. Tandem mass spectrometry provides direct separation of the isobaric compounds glycolaldehyde and acetic acid using distinct, collision-induced dissociation daughter ions. Measurement of hydroxyacetone and glycolaldehyde by these methods was demonstrated during the ARCTAS-CARB 2008 campaign and the BEARPEX 2009 campaign. Enhancement ratios of these compounds in ambient biomass burning plumes are reported for the ARCTAS-CARB campaign. BEARPEX observations are compared to simple photochemical box model predictions of biogenic volatile organic compound oxidation at the site.

  3. FT-IR and FT-Raman spectra of cimetidine and its metallocomplexes

    NASA Astrophysics Data System (ADS)

    Barańska, M.; Proniewicz, L. M.

    1999-11-01

    We present vibrational spectra of three stable, well-reproducible, polymorphic forms of cimetidine ( cim), a drug which is a powerful histamine H 2-receptor antagonist used in the treatment of peptic ulcer and the Zollinger-Ellison syndrome. Assignments of Raman and IR bands are made using semiempirical methods: MNDO, AM1 and PM3. We also describe the synthesis of Me( cim) 2(ClO 4) 2, where Me=Cu(II), Cd(II), Co(II) and Ni(II), and present their vibrational data. We show that the obtained complexes are isostructural, however a metal ion that occupies a center of octahedral unit introduces some distortions that can be seen in the spectra. We also make tentative assignment of metal-ligand stretching modes observed in low frequency range.

  4. Pain as a Barrier to Human Performance: A Focus on Function for Self-Reporting Pain With the Defense Veterans Pain Rating Scale.

    PubMed

    Buckenmaier, Chester C; Galloway, Kevin T; Polomano, Rosemary C; Deuster, Patricia A

    2016-01-01

    The intense physical demands and dangerous operational environments common to Special Operations Forces (SOF) result in a variety of painful conditions, including musculoskeletal pain, headaches, and acute and chronic pain from combat injuries. Pain is a wellaccepted barrier to human performance. The Pain Management Task Force and the development of the Defense Veterans Pain Rating Scale (DVPRS) are discussed to provide a framework for changing the culture of pain management away from intensity of pain to interference with function and performance. The emergence of complementary and integrative pain management (CIM) practices is briefly reviewed as viable alternatives to the traditional reliance on opioids and other prescription medications. The SOF community can be the change agent for the DVPRS and CIM approaches to pain management, which will in the end serve to accelerate recovery and return SOF operators to duty faster and with an enhanced ability to perform with less pain. PMID:27450608

  5. From Ambient Sensing to IoT-based Context Computing: An Open Framework for End to End QoC Management †

    PubMed Central

    Marie, Pierrick; Desprats, Thierry; Chabridon, Sophie; Sibilla, Michelle; Taconet, Chantal

    2015-01-01

    Quality of Context (QoC) awareness is recognized as a key point for the success of context-aware computing. At the time where the combination of the Internet of Things, Cloud Computing, and Ambient Intelligence paradigms offer together new opportunities for managing richer context data, the next generation of Distributed Context Managers (DCM) is facing new challenges concerning QoC management. This paper presents our model-driven QoCIM framework. QoCIM is the acronym for Quality of Context Information Model. We show how it can help application developers to manage the whole QoC life-cycle by providing genericity, openness and uniformity. Its usages are illustrated, both at design time and at runtime, in the case of an urban pollution context- and QoC-aware scenario. PMID:26087372

  6. From Ambient Sensing to IoT-based Context Computing: An Open Framework for End to End QoC Management.

    PubMed

    Marie, Pierrick; Desprats, Thierry; Chabridon, Sophie; Sibilla, Michelle; Taconet, Chantal

    2015-01-01

    Quality of Context (QoC) awareness is recognized as a key point for the success of context-aware computing. At the time where the combination of the Internet of Things, Cloud Computing, and Ambient Intelligence paradigms offer together new opportunities for managing richer context data, the next generation of Distributed Context Managers (DCM) is facing new challenges concerning QoC management. This paper presents our model-driven QoCIM framework. QoCIM is the acronym for Quality of Context Information Model. We show how it can help application developers to manage the whole QoC life-cycle by providing genericity, openness and uniformity. Its usages are illustrated, both at design time and at runtime, in the case of an urban pollution context- and QoC-aware scenario. PMID:26087372

  7. [Provision of residents of the city of Kiev with vitamins C and B1. Effectiveness of a complex vitamin-mineral preparation in preventing spring vitamin deficiencies].

    PubMed

    Donchenko, G V; Parkhomenko, Iu M; Petrova, G V; Pilipchuk, S Iu; Poskripko, Iu A; Bachinskaia, N Iu

    2000-01-01

    The investigation was conducted on provision with vitamins C and B1 of Kyiv inhabitants limited contingent at spring period and efficiency of complex vitamin-mineral preparations in normalisation of the vitamins level in blood of human-subjects. The deficit of vitamin C in 54% and vitamin B1 in 18.5% of the investigated people was revealed. Supradin gave the best results among rest preparations ("Centrum", "Vitrum", "Duovit", "Multi-Tabs") in the normalization of the level of vitamin C and biologically-active form of thiamine (thiamindiphosphate) in the blood of investigated people. PMID:11392790

  8. Integrated Computer System of Management in Logistics

    NASA Astrophysics Data System (ADS)

    Chwesiuk, Krzysztof

    2011-06-01

    This paper aims at presenting a concept of an integrated computer system of management in logistics, particularly in supply and distribution chains. Consequently, the paper includes the basic idea of the concept of computer-based management in logistics and components of the system, such as CAM and CIM systems in production processes, and management systems for storage, materials flow, and for managing transport, forwarding and logistics companies. The platform which integrates computer-aided management systems is that of electronic data interchange.

  9. Design Criteria for OSE-User Computer Facility-Upgrade

    SciTech Connect

    Beaver, C E

    1989-05-01

    This project provides for the upgrading of the 4th floor OSE User Computer Facility to house new computers for the Paperlesss Manufacturing initiative, to support a classified processing environment. This is intended to enhance Mound's manufacturing environment, while addressing several DOE strategic initiatives such as (CIM) Computer Integrated Manufacturing. By consolidating the Paperless Manufacturing Approach to the existing OSE User Computer Facility and to meet UCI needs to house classified processing a considerable reduction in Operating Cost should be achieved.

  10. A novel approach for speciation of airborne chromium by convective-interaction media fast-monolithic chromatography with electrothermal atomic-absorption spectrometric detection.

    PubMed

    Scancar, Janez; Milacic, Radmila

    2002-05-01

    A new analytical procedure using an anion-exchange separation support based on convective-interaction media (CIM) was developed for the speciation of chromium. The separation of Cr(VI) was performed on a weak anion-exchange CIM diethylamine (DEAE) fast-monolithic chromatographic disc. Buffer A (0.005 mol dm(-3) TRIS-HCl, pH 8.0) and buffer B (buffer A plus 3 mol dm(-3) NH4NO3) were employed in the separation procedure. The separated chromium species were determined 'off-line' by ETAAS in 0.5 cm3 fractions. The applicability of the CIM DEAE-ETAAS procedure was investigated for the determination of airborne Cr(VI) at a plasma cutting workplace. Aerosols were collected on polycarbonate membrane filters of 8 and 0.4 microm pore size (inhalable and respirable aerosols). Alkaline extraction of filters in a heated ultrasonic bath was applied to leach chromium. Good repeatability of measurement (+/-3.0%) of the alkaline extracts was obtained for Cr(VI). The LOD (3s) was found to be 0.30 microg m(-3) Cr(VI), when 0.25 m3 of air was collected on the filter. The validation of the procedure was performed by spiking filters with Cr(VI) and by the analysis of the standard reference material CRM 545, Cr(VI) in welding dust loaded on a filter. Good recoveries for spiked samples (101-102%) and good agreement between Cr(VI) found and the reported certified value for CRM 545 were obtained. The extracts were also analysed by the FPLC-ETAAS technique. Good agreement between two techniques (r2 = 0.9978) confirmed the reliability of the CIM DEAE-ETAAS procedure developed. The main advantage of the procedure lies in the speed of the chromatographic separation (chromatographic run completed in 15 min). PMID:12081040

  11. The CMIP5 Model Documentation Questionnaire: Development of a Metadata Retrieval System for the METAFOR Common Information Model

    NASA Astrophysics Data System (ADS)

    Pascoe, Charlotte; Lawrence, Bryan; Moine, Marie-Pierre; Ford, Rupert; Devine, Gerry

    2010-05-01

    The EU METAFOR Project (http://metaforclimate.eu) has created a web-based model documentation questionnaire to collect metadata from the modelling groups that are running simulations in support of the Coupled Model Intercomparison Project - 5 (CMIP5). The CMIP5 model documentation questionnaire will retrieve information about the details of the models used, how the simulations were carried out, how the simulations conformed to the CMIP5 experiment requirements and details of the hardware used to perform the simulations. The metadata collected by the CMIP5 questionnaire will allow CMIP5 data to be compared in a scientifically meaningful way. This paper describes the life-cycle of the CMIP5 questionnaire development which starts with relatively unstructured input from domain specialists and ends with formal XML documents that comply with the METAFOR Common Information Model (CIM). Each development step is associated with a specific tool. (1) Mind maps are used to capture information requirements from domain experts and build a controlled vocabulary, (2) a python parser processes the XML files generated by the mind maps, (3) Django (python) is used to generate the dynamic structure and content of the web based questionnaire from processed xml and the METAFOR CIM, (4) Python parsers ensure that information entered into the CMIP5 questionnaire is output as CIM compliant xml, (5) CIM compliant output allows automatic information capture tools to harvest questionnaire content into databases such as the Earth System Grid (ESG) metadata catalogue. This paper will focus on how Django (python) and XML input files are used to generate the structure and content of the CMIP5 questionnaire. It will also address how the choice of development tools listed above provided a framework that enabled working scientists (who we would never ordinarily get to interact with UML and XML) to be part the iterative development process and ensure that the CMIP5 model documentation questionnaire

  12. Distinct muscle apoptotic pathways are activated in muscles with different fiber types a rat model of critical illness myopathy

    PubMed Central

    Barnes, Benjamin T.; Confides, Amy L.; Rich, Mark M.; Dupont-Versteegden, Esther E.

    2015-01-01

    Critical illness myopathy (CIM) is associated with severe muscle atrophy and fatigue in affected patients. Apoptotic signaling is involved in atrophy and is elevated in muscles from patients with CIM. In this study we investigated underlying mechanisms of apoptosis-related pathways in muscles with different fiber type composition in a rat model of CIM using denervation and glucocorticoid administration (denervation and steroid-induced myopathy, DSIM). Soleus and tibialis anterior (TA) muscles showed severe muscle atrophy (40–60% of control muscle weight) and significant apoptosis in interstitial as well as myofiber nuclei that was similar between the two muscles with DSIM. Caspase-3 and −8 activities, but not caspase-9 and −12, were elevated in TA and not in soleus muscle, while the caspase-independent proteins endonuclease G (EndoG) and apoptosis inducing factor (AIF) were not changed in abundance nor differentially localized in either muscle. Anti-apoptotic proteins HSP70, −27, and apoptosis repressor with a caspase recruitment domain (ARC) were elevated in soleus compared to TA muscle and ARC was significantly decreased with induction of DSIM in soleus. Results indicate that apoptosis is a significant process associated with DSIM in both soleus and TA muscles, and that apoptosis-associated processes are differentially regulated in muscles of different function and fiber type undergoing atrophy due to DSIM. We conclude that interventions combating apoptosis with CIM may need to be directed towards inhibiting caspase-dependent as well as -independent mechanisms to be able to affect muscles of all fiber types. PMID:25740800

  13. First Measurements of Neutral Atmospheric Cluster and 1–2 nm Particle Number Size Distributions During Nucleation Events

    SciTech Connect

    Jiang, J.; Kuang, C.; Zhao, J.; Chen, M.; Eisele, F. L.; Scheckman, J.; Williams, B. J.; McMurry, P. H.

    2011-02-01

    Recent observations throughout the atmosphere have shown that nucleation occurs frequently (Kulmala et al. 2004). Modeling studies and observations have shown that nucleated particles contribute significantly to concentrations of cloud condensation nuclei (Spracklen et al. 2008), thereby affecting climate (IPCC 2007). Size-resolved measurements extending down to molecular dimensions can provide information on processes that lead to nucleation and would enable development and verification of theories for particle nucleation and growth in the atmosphere and other aerosol systems. This article describes measurements of the complete number size distribution, spanning the size range from vapor molecules and molecular clusters to submicrometer particles, during atmospheric nucleation events. The measurements used two new instruments, the cluster chemical ionization mass spectrometer (Cluster CIMS) and the DEG SMPS. The Cluster CIMS measures neutral molecular clusters from 50 to 900 amu. The DEG SMPS is a scanning mobility particle spectrometer (SMPS) equipped with a diethylene glycol (DEG)-based condensation particle counter (CPC) capable of 1.1 nm mobility diameter particle detection, and overlapping the sizes detected by the Cluster CIMS (Iida et al. 2009; Jiang et al. 2011). The Cluster CIMS distinguishes neutral clusters from ions formed by ion-induced clustering by varying the reaction time for ions with the sampled air (Zhao et al. 2010). It distinguishes clusters from high molecular weight gases by measuring the incremental signal at a specified mass detected during nucleation events. The clusters that were measured in this study contain sulfuric acid, which is known to participate in atmospheric nucleation (Kuang et al. 2008).

  14. Computer aided production engineering

    SciTech Connect

    Not Available

    1986-01-01

    This book presents the following contents: CIM in avionics; computer analysis of product designs for robot assembly; a simulation decision mould for manpower forecast and its application; development of flexible manufacturing system; advances in microcomputer applications in CAD/CAM; an automated interface between CAD and process planning; CAM and computer vision; low friction pneumatic actuators for accurate robot control; robot assembly of printed circuit boards; information systems design for computer integrated manufacture; and a CAD engineering language to aid manufacture.

  15. QTL mapping of slow-rusting, adult plant resistance to race Ug99 of stem rust fungus in PBW343/Muu RIL population.

    PubMed

    Singh, Sukhwinder; Singh, Ravi P; Bhavani, Sridhar; Huerta-Espino, Julio; Eugenio, Lopez-Vera Eric

    2013-05-01

    Races of stem rust fungus pose a major threat to wheat production worldwide. We mapped adult plant resistance (APR) to Ug99 in 141 lines of a PBW343/Muu recombinant inbred lines (RILs) population by phenotyping them for three seasons at Njoro, Kenya in field trials and genotyping them with Diversity Arrays Technology (DArT) markers. Moderately susceptible parent PBW343 and APR parent Muu displayed mean stem rust severities of 66.6 and 5 %, respectively. The mean disease severity of RILs ranged from 1 to 100 %, with an average of 23.3 %. Variance components for stem rust severity were highly significant (p < 0.001) for RILs and seasons and the heritability (h (2)) for the disease ranged between 0.78 and 0.89. Quantitative trait loci (QTL) analysis identified four consistent genomic regions on chromosomes 2BS, 3BS, 5BL, and 7AS; three contributed by Muu (QSr.cim-2BS, QSr.cim-3BS and QSr.cim-7AS) and one (QSr.cim-5BL) derived from PBW343. RILs with flanking markers for these QTLs had significantly lower severities than those lacking the markers, and combinations of QTLs had an additive effect, significantly enhancing APR. The QTL identified on chromosome 3BS mapped to the matching region as the known APR gene Sr2. Four additional QTLs on chromosomes 1D, 3A, 4B, and 6A reduced disease severity significantly at least once in three seasons. Our results show a complex nature of APR to stem rust where Sr2 and other minor slow rusting resistance genes can confer a higher level of resistance when present together. PMID:23440380

  16. Composite interval mapping and mixed models reveal QTL associated with performance and carcass traits on chicken chromosomes 1, 3, and 4.

    PubMed

    Rosario, M F; Gazaffi, R; Moura, A S A M T; Ledur, M C; Coutinho, L L; Garcia, A A F

    2014-02-01

    Interval mapping (IM) implemented in QTL Express or GridQTL is widely used, but presents some limitations, such as restriction to a fixed model, risk of mapping two QTL when there may be only one and no discrimination of two or more QTL using both cofactors located on the same and other chromosomes. These limitations were overcome with composite interval mapping (CIM). We reported QTL associated with performance and carcass traits on chicken chromosomes 1, 3, and 4 through implementation of CIM and analysis of phenotypic data using mixed models. Thirty-four microsatellite markers were used to genotype 360 F2 chickens from crosses between males from a layer line and females from a broiler line. Sixteen QTL were mapped using CIM and 14 QTL with IM. Furthermore, of those 30 QTL, six were mapped only when CIM was used: for body weight at 35 days (first and third peaks on GGA4), body weight at 41 days (GGA1B and second peak on GGA4), and weights of back and legs (both on GGA4). Three new regions had evidence for QTL presence: one on GGA1B associated with feed intake 35-41 d at 404 cM (LEI0107-ADL0183) and two on GGA4 associated with weight of back at 163 cM (LEI0076-MCW0240) and weight gain 35-41 d, feed efficiency 35-41 d and weight of legs at 241 cM (LEI0085-MCW0174). We dissected one more linked QTL on GGA4, where three QTL for BW35 and two QTL for BW41 were mapped. Therefore, these new regions mapped here need further investigations using high-density SNP to confirm these QTL and identify candidate genes associated with those traits. PMID:24288072

  17. The Sick and the Weak: Neuropathies/Myopathies in the Critically Ill

    PubMed Central

    Friedrich, O.; Reid, M. B.; Van den Berghe, G.; Vanhorebeek, I.; Hermans, G.; Rich, M. M.; Larsson, L.

    2015-01-01

    Critical illness polyneuropathies (CIP) and myopathies (CIM) are common complications of critical illness. Several weakness syndromes are summarized under the term intensive care unit-acquired weakness (ICUAW). We propose a classification of different ICUAW forms (CIM, CIP, sepsis-induced, steroid-denervation myopathy) and pathophysiological mechanisms from clinical and animal model data. Triggers include sepsis, mechanical ventilation, muscle unloading, steroid treatment, or denervation. Some ICUAW forms require stringent diagnostic features; CIM is marked by membrane hypoexcitability, severe atrophy, preferential myosin loss, ultrastructural alterations, and inadequate autophagy activation while myopathies in pure sepsis do not reproduce marked myosin loss. Reduced membrane excitability results from depolarization and ion channel dysfunction. Mitochondrial dysfunction contributes to energy-dependent processes. Ubiquitin proteasome and calpain activation trigger muscle proteolysis and atrophy while protein synthesis is impaired. Myosin loss is more pronounced than actin loss in CIM. Protein quality control is altered by inadequate autophagy. Ca2+ dysregulation is present through altered Ca2+ homeostasis. We highlight clinical hallmarks, trigger factors, and potential mechanisms from human studies and animal models that allow separation of risk factors that may trigger distinct mechanisms contributing to weakness. During critical illness, altered inflammatory (cytokines) and metabolic pathways deteriorate muscle function. ICUAW prevention/treatment is limited, e.g., tight glycemic control, delaying nutrition, and early mobilization. Future challenges include identification of primary/secondary events during the time course of critical illness, the interplay between membrane excitability, bioenergetic failure and differential proteolysis, and finding new therapeutic targets by help of tailored animal models. PMID:26133937

  18. A photochemical source of peroxypropionic and peroxyisobutanoic nitric anhydride

    NASA Astrophysics Data System (ADS)

    Furgeson, Amanda; Mielke, Levi H.; Paul, Dipayan; Osthoff, Hans D.

    2011-09-01

    A method to photochemically generate stable outputs of peroxyacetic, peroxypropionic, or peroxyisobutanoic nitric anhydride (PAN, PPN, or PiBN) in dilute gas streams is described. The PANs are generated by photolysis of excess acetone, diethyl ketone, or diisopropyl ketone in the presence of oxygen and either nitric oxide or nitrogen dioxide. The source output was characterized using a commercial NO y monitor, an in-house constructed thermal dissociation cavity ring-down spectrometer (TD-CRDS) equipped with a heated inlet for quantification of NO 2, total peroxyacyl nitrates (∑PAN), and total alkyl nitrates (∑AN), and a thermal dissociation chemical ionization mass spectrometer (TD-CIMS) operated with iodide reagent ion. The TD-CIMS was calibrated (against TD-CRDS) using diffusion sources containing synthetic PAN standards. Response factors of 21, 19, and 5 counts per pptv, normalized to 1 million counts of iodide reagent ion, were found for PAN (monitored at m/z 59), PPN ( m/z 73), and PiBN ( m/z 87), respectively. The photo source was found to generate the three PANs in high yield. CIMS response factors derived using the photo source and TD-CRDS were identical to those derived from synthetic standards for PAN and PPN; hence, the photochemical PAN and PPN sources may be used to calibrate TD-CIMS (against TD-CRDS). For PiBN, the response factor derived using the photo source was 60% larger than that derived using the synthetic standard, limiting its use to deliver a calibrated stream of PiBN.

  19. Hybrid Simulation Modeling to Estimate U.S. Energy Elasticities

    NASA Astrophysics Data System (ADS)

    Baylin-Stern, Adam C.

    This paper demonstrates how an U.S. application of CIMS, a technologically explicit and behaviourally realistic energy-economy simulation model which includes macro-economic feedbacks, can be used to derive estimates of elasticity of substitution (ESUB) and autonomous energy efficiency index (AEEI) parameters. The ability of economies to reduce greenhouse gas emissions depends on the potential for households and industry to decrease overall energy usage, and move from higher to lower emissions fuels. Energy economists commonly refer to ESUB estimates to understand the degree of responsiveness of various sectors of an economy, and use estimates to inform computable general equilibrium models used to study climate policies. Using CIMS, I have generated a set of future, 'pseudo-data' based on a series of simulations in which I vary energy and capital input prices over a wide range. I then used this data set to estimate the parameters for transcendental logarithmic production functions using regression techniques. From the production function parameter estimates, I calculated an array of elasticity of substitution values between input pairs. Additionally, this paper demonstrates how CIMS can be used to calculate price-independent changes in energy-efficiency in the form of the AEEI, by comparing energy consumption between technologically frozen and 'business as usual' simulations. The paper concludes with some ideas for model and methodological improvement, and how these might figure into future work in the estimation of ESUBs from CIMS. Keywords: Elasticity of substitution; hybrid energy-economy model; translog; autonomous energy efficiency index; rebound effect; fuel switching.

  20. Deconstructing Spatial Working Memory and Attention Deficits in Multiple Sclerosis

    PubMed Central

    Gmeindl, Leon; Courtney, Susan M.

    2011-01-01

    Objective To investigate whether spatial working memory (WM) is impaired in multiple sclerosis (MS), and, if it is, to localize impairment to specific cognitive subprocess(es). Method In Experiment 1, MS and control participants performed computerized memory-span and visuomotor tasks. WM subprocesses were taxed by manipulating (1) the requirement to remember serial order, (2) delay duration, and (3) the presence of irrelevant stimuli during target presentation. In Experiment 2, recall and recognition tests varied the difficulty of WM retrieval. In Experiment 3, an attention-cueing task tested the ability to voluntarily and rapidly reorient attention. Results Performance was worse for MS than for control participants in both spatial recall (Exp. 1 span: 95% CIMS = [5.11, 5.57], 95% CIControls = [5.58, 6.03], p = 0.003, 1-tailed; Exp. 2 span: 95% CIMS = [4.44, 5.54], 95% CIControls = [5.47, 6.57], p = 0.006, 1-tailed) and recognition (accuracy: 95% CIMS = [0.71, 0.81], 95% CIControls = [0.79, 0.88], p = 0.01, 1-tailed) tests. However, there was no evidence for deficits in spatiotemporal binding, maintenance, retrieval, distractor suppression, or visuomotor processing. In contrast, MS participants were abnormally slow to reorient attention (cueing effect (ms): 95% CIMS: [90, 169], 95% CIControls: [29, 107], p = 0.015, 1-tailed). Conclusions Results suggest that, whereas spatial WM is impaired in MS, once spatial information has been adequately encoded into WM, individuals with MS are, on average, able to maintain and retrieve this information. Impoverished encoding of spatial information, however, may be due to inefficient voluntary orienting of attention. PMID:22059650

  1. Analysis of secondary organic aerosols from ozonolysis of isoprene by proton transfer reaction mass spectrometry

    NASA Astrophysics Data System (ADS)

    Inomata, Satoshi; Sato, Kei; Hirokawa, Jun; Sakamoto, Yosuke; Tanimoto, Hiroshi; Okumura, Motonori; Tohno, Susumu; Imamura, Takashi

    2014-11-01

    To understand the mechanism of formation of the secondary organic aerosols (SOAs) produced by the ozonolysis of isoprene, proton transfer reaction mass spectrometry (PTR-MS) was used to identify the semi-volatile organic compounds (SVOCs) produced in both the gaseous and the aerosol phases and to estimate the gas-aerosol partitioning of each SVOC in chamber experiments. To aid in the identification of the SVOCs, the products were also studied with negative ion-chemical ionization mass spectrometry (NI-CIMS), which can selectively detect carboxylic acids and hydroperoxides. The gaseous products were observed by on-line PTR-MS and NI-CIMS, whereas the SVOCs in SOAs collected on a filter were vaporized by heating the filter and were then analysed by off-line PTR-MS and NI-CIMS. The formation of oligomeric hydroperoxides involving a Criegee intermediate as a chain unit was observed in both the gaseous and the aerosol phases by NI-CIMS. PTR-MS also detected oligomeric hydroperoxides as protonated molecules from which a H2O molecule was eliminated, [M-OH]+. In the aerosol phase, oligomers involving formaldehyde and methacrolein as chain units were observed by PTR-MS in addition to oligomeric hydroperoxides. The gas-aerosol partitioning of each component was calculated from the ion signals in the gaseous and aerosol phases measured by PTR-MS. From the gas-aerosol partitioning, the saturated vapour pressures of the oligomeric hydroperoxides were estimated. Measurements by a fast-mobility-particle-sizer spectrometer revealed that the increase of the number density of the particles was complete within a few hundred seconds from the start of the reaction.

  2. Gas-Phase Oxidation, Particle Uptake, and Product Studies of Isoprene Epoxydiols

    NASA Astrophysics Data System (ADS)

    Bates, K. H.; Nguyen, T. B.; St Clair, J. M.; Crounse, J.; Zhang, X.; Coggon, M.; Schwantes, R.; Bennett, N.; Stoltz, B.; Wennberg, P. O.; Seinfeld, J.

    2013-12-01

    Isoprene epoxydiols (IEPOX), discovered in 2009 as low-NOx atmospheric oxidation products of the ubiquitous biogenic precursor isoprene, are key intermediates in the formation of secondary organic aerosol (SOA) from biogenic emissions. Recent studies carried out in the Caltech environmental chambers have elucidated the gas-phase OH oxidation rates and products, particle uptake rates, and particle-phase OH oxidation products of three isomers of IEPOX synthesized in-house. Gas-phase oxidation studies were conducted in 1 m3 chambers at both high- and low-NOx conditions, and were monitored by GC-FID, two types of chemical ionization mass spectrometry (CIMS), and GC-CIMS. Comparisons with previous studies on isoprene showed that the two β-IEPOX isomers dominate over the ∂ isomers under atmospheric conditions, and the use of propene as an internal standard provided a robust estimate of OH oxidation rates between 0.99*10-11 and 1.67*10-11 cm3molec-1s-1 for the three isomers. Particle uptake and oxidation studies were conducted in 28 m3 chambers, and were monitored by GC-FID, CIMS, an aerosol mass spectrometer (AMS), and a differential mobility analyzer (DMA). Particle uptake showed a strong dependence on humidity, with no uptake on dry seed, and was faster on ammonium sulfate seed than sodium chloride seed. Particle-phase oxidation gave similar products to gas-phase oxidation by OH radicals.

  3. Intensive care unit acquired weakness in children: Critical illness polyneuropathy and myopathy

    PubMed Central

    Kukreti, Vinay; Shamim, Mosharraf; Khilnani, Praveen

    2014-01-01

    Background and Aims: Intensive care unit acquired weakness (ICUAW) is a common occurrence in patients who are critically ill. It is most often due to critical illness polyneuropathy (CIP) or to critical illness myopathy (CIM). ICUAW is increasingly being recognized partly as a consequence of improved survival in patients with severe sepsis and multi-organ failure, partly related to commonly used agents such as steroids and muscle relaxants. There have been occasional reports of CIP and CIM in children, but little is known about their prevalence or clinical impact in the pediatric population. This review summarizes the current understanding of pathophysiology, clinical presentation, diagnosis and treatment of CIP and CIM in general with special reference to published literature in the pediatric age group. Subjects and Methods: Studies were identified through MedLine and Embase using relevant MeSH and Key words. Both adult and pediatric studies were included. Results: ICUAW in children is a poorly described entity with unknown incidence, etiology and unclear long-term prognosis. Conclusions: Critical illness polyneuropathy and myopathy is relatively rare, but clinically significant sequelae of multifactorial origin affecting morbidity, length of intensive care unit (ICU) stay and possibly mortality in critically ill children admitted to pediatric ICU. PMID:24678152

  4. Mechanical Signaling in the Pathophysiology of Critical Illness Myopathy

    PubMed Central

    Kalamgi, Rebeca C.; Larsson, Lars

    2016-01-01

    The complete loss of mechanical stimuli of skeletal muscles, i.e., the loss of external strain, related to weight bearing, and internal strain, related to the contraction of muscle cells, is uniquely observed in pharmacologically paralyzed or deeply sedated mechanically ventilated intensive care unit (ICU) patients. The preferential loss of myosin and myosin associated proteins in limb and trunk muscles is a significant characteristic of critical illness myopathy (CIM) which separates CIM from other types of acquired muscle weaknesses in ICU patients. Mechanical silencing is an important factor triggering CIM. Microgravity or ground based microgravity models form the basis of research on the effect of muscle unloading-reloading, but the mechanisms and effects may differ from the ICU conditions. In order to understand how mechanical tension regulates muscle mass, it is critical to know how muscles sense mechanical information and convert stimulus to intracellular biochemical actions and changes in gene expression, a process called cellular mechanotransduction. In adult skeletal muscles and muscle fibers, this process may differ, the same stimulus can cause divergent response and the same fiber type may undergo opposite changes in different muscles. Skeletal muscle contains multiple types of mechano-sensors and numerous structures that can be affected differently and hence respond differently in distinct muscles. PMID:26869939

  5. Comparison of injection molding and injection/compression molding for the replication of microstructure

    NASA Astrophysics Data System (ADS)

    Hong, Seokkwan; Hwang, Jeongho; Kang, Jeongjin; Yoon, Kyunghwan

    2015-11-01

    Because of increasing interest in the functional surfaces including micro- or nano-patterns, the mass production of such surfaces has been actively researched. Both conventional injection molding (CIM) and injection/compression molding (ICM) of micro-patterns were investigated in the present study. The molding subject is a multi-scale structure that consists of a macro-scale thin plate and micro-scale patterns formed regularly on its surface. The transcription ratios of micro pattern made by CIM and ICM for different flow length were experimentally measured, and the origin of the obtained results was identified through numerical analysis. It was found that the cavity pressure and polymer temperature are the most important factors for micro-pattern filling; in particular, the polymer temperature is the key factor determining the transcription ratio. It was also found that the difference in CIM and ICM micro-pattern transcription ratios originates from the differences in the cavity pressure history if other molding conditions are the same.

  6. Evaluation of NO+ reagent ion chemistry for online measurements of atmospheric volatile organic compounds

    NASA Astrophysics Data System (ADS)

    Koss, Abigail R.; Warneke, Carsten; Yuan, Bin; Coggon, Matthew M.; Veres, Patrick R.; de Gouw, Joost A.

    2016-07-01

    NO+ chemical ionization mass spectrometry (NO+ CIMS) can achieve fast (1 Hz and faster) online measurement of trace atmospheric volatile organic compounds (VOCs) that cannot be ionized with H3O+ ions (e.g., in a PTR-MS or H3O+ CIMS instrument). Here we describe the adaptation of a high-resolution time-of-flight H3O+ CIMS instrument to use NO+ primary ion chemistry. We evaluate the NO+ technique with respect to compound specificity, sensitivity, and VOC species measured compared to H3O+. The evaluation is established by a series of experiments including laboratory investigation using a gas-chromatography (GC) interface, in situ measurement of urban air using a GC interface, and direct in situ measurement of urban air. The main findings are that (1) NO+ is useful for isomerically resolved measurements of carbonyl species; (2) NO+ can achieve sensitive detection of small (C4-C8) branched alkanes but is not unambiguous for most; and (3) compound-specific measurement of some alkanes, especially isopentane, methylpentane, and high-mass (C12-C15) n-alkanes, is possible with NO+. We also demonstrate fast in situ chemically specific measurements of C12 to C15 alkanes in ambient air.

  7. Mixed culture biofilms of Salmonella Typhimurium and cultivable indigenous microorganisms on lettuce show enhanced resistance of their sessile cells to cold oxygen plasma.

    PubMed

    Jahid, Iqbal Kabir; Han, Noori; Zhang, Cheng-Yi; Ha, Sang-Do

    2015-04-01

    Control of foodborne pathogens in fresh produce is crucial for food safety, and numerous Salmonella Typhimurium (ST) outbreaks have been reported already. The present study was done to assess effectiveness of cold oxygen plasma (COP) against biofilms of ST mixed with cultivable indigenous microorganisms (CIM). ST and CIM were grown at 15 °C as monocultures and mixed cultures for planktonic state, biofilm on stainless steel, and lettuce leaves. Thereafter, the samples were treated with COP and surviving populations were counted using plate counting methods. Biofilms and stomatal colonization were examined using field emission scanning electron microscopy (FESEM) and food quality was assessed after treatment. Mixed cultures of ST and CIM showed an antagonistic interaction on lettuce but not on SS or in planktonic state. Mixed cultures showed significantly (p < 0.05) greater resistance to COP compared to monoculture biofilms on lettuce but not on SS or planktonic state. Shift from smooth to rugose colony type was found for planktonic and for biofilms on SS but not on lettuce for ST. Mixed culture biofilms colonized stomata on the inside as demonstrated by FESEM. Although, lettuce quality was not affected by COP, this technology has to be optimized for further development of the successful inactivation of complex multispecies biofilm structures presented by real food environment. PMID:25475308

  8. Detection of dimethylamine in the low pptv range using nitrate chemical ionization atmospheric pressure interface time-of-flight (CI-APi-TOF) mass spectrometry

    NASA Astrophysics Data System (ADS)

    Simon, Mario; Heinritzi, Martin; Herzog, Stephan; Leiminger, Markus; Bianchi, Federico; Praplan, Arnaud; Dommen, Josef; Curtius, Joachim; Kürten, Andreas

    2016-05-01

    Amines are potentially important for atmospheric new particle formation, but their concentrations are usually low with typical mixing ratios in the pptv range or even smaller. Therefore, the demand for highly sensitive gas-phase amine measurements has emerged in the last several years. Nitrate chemical ionization mass spectrometry (CIMS) is routinely used for the measurement of gas-phase sulfuric acid in the sub-pptv range. Furthermore, extremely low volatile organic compounds (ELVOCs) can be detected with a nitrate CIMS. In this study we demonstrate that a nitrate CIMS can also be used for the sensitive measurement of dimethylamine (DMA, (CH3)2NH) using the NO3-•(HNO3)1 - 2• (DMA) cluster ion signal. Calibration measurements were made at the CLOUD chamber during two different measurement campaigns. Good linearity between 0 and ˜ 120 pptv of DMA as well as a sub-pptv detection limit of 0.7 pptv for a 10 min integration time are demonstrated at 278 K and 38 % RH.

  9. Clinical and Molecular Characterization of Osteogenesis Imperfecta Type V

    PubMed Central

    Brizola, Evelise; Mattos, Eduardo P.; Ferrari, Jessica; Freire, Patricia O.A.; Germer, Raquel; Llerena Jr, Juan C.; Félix, Têmis M.

    2015-01-01

    Osteogenesis imperfecta type V (OI-V) has a wide clinical variability, with distinct clinical/radiological features, such as calcification of the interosseous membrane (CIM) between the radius-ulna and/or tibia-fibula, hyperplastic callus (HPC) formation, dislocation of the radial head (DRH), and absence of dentinogenesis imperfecta (DI). Recently, a single heterozygous mutation (c.-14C>T) in the 5′UTR of the IFITM5 gene was identified to be causative for OI-V. Here, we describe 7 individuals from 5 unrelated families that carry the c.-14C>T IFITM5 mutation. The clinical findings in these cases are: absence of DI in all patients, presence of blue sclera in 2 cases, and 4 patients with DRH. Radiographic findings revealed HPC in 3 cases. All patients presented CIM between the radius and ulna, while 4 patients presented additional CIM between the tibia and fibula. Spinal fractures by vertebral compression were observed in all individuals. The proportion of cases identified with this mutation represents 4% of OI cases at our institution. The clinical identification of OI-V is crucial, as this mutation has an autosomal dominant inheritance with variable expressivity. PMID:26648832

  10. Clinical and Molecular Characterization of Osteogenesis Imperfecta Type V.

    PubMed

    Brizola, Evelise; Mattos, Eduardo P; Ferrari, Jessica; Freire, Patricia O A; Germer, Raquel; Llerena, Juan C; Félix, Têmis M

    2015-10-01

    Osteogenesis imperfecta type V (OI-V) has a wide clinical variability, with distinct clinical/radiological features, such as calcification of the interosseous membrane (CIM) between the radius-ulna and/or tibia-fibula, hyperplastic callus (HPC) formation, dislocation of the radial head (DRH), and absence of dentinogenesis imperfecta (DI). Recently, a single heterozygous mutation (c.-14C>T) in the 5'UTR of the IFITM5 gene was identified to be causative for OI-V. Here, we describe 7 individuals from 5 unrelated families that carry the c.-14C>T IFITM5 mutation. The clinical findings in these cases are: absence of DI in all patients, presence of blue sclera in 2 cases, and 4 patients with DRH. Radiographic findings revealed HPC in 3 cases. All patients presented CIM between the radius and ulna, while 4 patients presented additional CIM between the tibia and fibula. Spinal fractures by vertebral compression were observed in all individuals. The proportion of cases identified with this mutation represents 4% of OI cases at our institution. The clinical identification of OI-V is crucial, as this mutation has an autosomal dominant inheritance with variable expressivity. PMID:26648832

  11. A novel method for concentrating hepatitis A virus and caliciviruses from bottled water.

    PubMed

    Kovac, Katarina; Gutiérrez-Aguirre, Ion; Banjac, Marko; Peterka, Matjaz; Poljsak-Prijatelj, Mateja; Ravnikar, Maja; Mijovski, Janet Zimsek; Schultz, Anna Charlotte; Raspor, Peter

    2009-12-01

    Human enteric viruses are detected frequently in various types of environmental water samples, such as irrigation water, wastewater, recreational water, ground or subsurface water and even drinking water, constituting a primary source of gastroenteritis or hepatitis outbreaks. Only a few, but still infective number of viral particles are normally present in water samples, therefore an efficient virus concentration procedure is essential prior to molecular detection of the viral nucleic acid. In this study, a novel chromatographic technology, Convective Interaction Media (CIM) monolithic supports, were optimized and applied to the concentration of hepatitis A virus (HAV) and feline calicivirus (FCV), a surrogate of norovirus (NoV), from water samples. Two-step real-time RT-qPCR was used for quantitation of the virus concentration in the chromatographic fractions. Positively charged CIM QA (quaternary amine) monolithic columns were used for binding of HAV and FCV present in previously inoculated 1.5 l bottled water samples. Column bound viruses were eluted from the monolith using 1M NaCl to a final volume of 15 ml. Elution volume was concentrated further by ultracentrifugation. When the CIM/ultracentrifugation method was compared with another concentration method employing positively charged membranes and ultrafiltration, the recovery of HAV was improved by approximately 20%. PMID:19646482

  12. The evolution of integrative medical education: the influence of the University of Arizona Center for Integrative Medicine.

    PubMed

    Maizes, Victoria; Horwitz, Randy; Lebensohn, Patricia; McClafferty, Hilary; Dalen, James; Weil, Andrew

    2015-11-01

    The University of Arizona Center for Integrative Medicine (AzCIM) was founded in 1994 with a primary focus of educating physicians in integrative medicine (IM). Twenty years later, IM has become an internationally recognized movement in medicine. With 40% of United States' medical schools having membership in the Academic Consortium for Integrative Medicine and Health it is foreseeable that all medical students and residents will soon receive training in the principles and practices of IM. The AzCIM has the broadest range and depth of IM educational programs and has had a major influence on integrative medical education in the United States. This review describes the fellowship, residency and medical student programs at AzCIM as well as other significant national drivers of IM education; it also points out the challenges faced in developing IM initiatives. The field of IM has matured with new national board certification in IM requiring fellowship training. Allied health professional IM educational courses, as well as integrative health coaching, assure that all members of the health care team can receive training. This review describes the evolution of IM education and will be helpful to academic centers, health care institutions, and countries seeking to introduce IM initiatives. PMID:26559360

  13. Development of a new corona discharge based ion source for high resolution time-of-flight chemical ionization mass spectrometer to measure gaseous H2SO4 and aerosol sulfate

    NASA Astrophysics Data System (ADS)

    Zheng, Jun; Yang, Dongsen; Ma, Yan; Chen, Mindong; Cheng, Jin; Li, Shizheng; Wang, Ming

    2015-10-01

    A new corona discharge (CD) based ion source was developed for a commercial high-resolution time-of-flight chemical ionization mass spectrometer (HRToF-CIMS) (Aerodyne Research Inc.) to measure both gaseous sulfuric acid (H2SO4) and aerosol sulfate after thermal desorption. Nitrate core ions (NO3-) were used as reagent ions and were generated by a negative discharge in zero air followed by addition of excess nitrogen dioxide (NO2) to convert primary ions and hydroxyl radicals (OH) into NO3- ions and nitric acid (HNO3). The CD-HRToF-CIMS showed no detectable interference from hundreds parts per billion by volume (ppbv) of sulfur dioxide (SO2). Unlike the atmospheric pressure ionization (API) ToF-CIMS, the CD ion source was integrated onto the ion-molecule reaction (IMR) chamber and which made it possible to measure aerosol sulfate by coupling to a filter inlet for gases and aerosols (FIGAERO). Moreover, compared with a quadrupole-based mass spectrometer, the desired HSO4- signal was detected by its exact mass of m/z 96.960, which was well resolved from the potential interferences of HCO3-ṡ(H2O)2 (m/z 97.014) and O-ṡH2OṡHNO3 (m/z 97.002). In this work, using laboratory-generated standards the CD-HRToF-CIMS was demonstrated to be able to detect as low as 3.1 × 105 molecules cm-3 gaseous H2SO4 and 0.5 μg m-3 ammonium sulfate based on 10-s integration time and two times of the baseline noise. The CD ion source had the advantages of low cost and a simple but robust structure. Since the system was non-radioactive and did not require corrosive HNO3 gas, it can be readily field deployed. The CD-HRToF-CIMS can be a powerful tool for both field and laboratory studies of aerosol formation mechanism and the chemical processes that were critical to understand the evolution of aerosols in the atmosphere.

  14. Mechanisms underlying ICU muscle wasting and effects of passive mechanical loading

    PubMed Central

    2012-01-01

    Introduction Critically ill ICU patients commonly develop severe muscle wasting and impaired muscle function, leading to delayed recovery, with subsequent increased morbidity and financial costs, and decreased quality of life for survivors. Critical illness myopathy (CIM) is a frequently observed neuromuscular disorder in ICU patients. Sepsis, systemic corticosteroid hormone treatment and post-synaptic neuromuscular blockade have been forwarded as the dominating triggering factors. Recent experimental results from our group using a unique experimental rat ICU model show that the mechanical silencing associated with CIM is the primary triggering factor. This study aims to unravel the mechanisms underlying CIM, and to evaluate the effects of a specific intervention aiming at reducing mechanical silencing in sedated and mechanically ventilated ICU patients. Methods Muscle gene/protein expression, post-translational modifications (PTMs), muscle membrane excitability, muscle mass measurements, and contractile properties at the single muscle fiber level were explored in seven deeply sedated and mechanically ventilated ICU patients (not exposed to systemic corticosteroid hormone treatment, post-synaptic neuromuscular blockade or sepsis) subjected to unilateral passive mechanical loading for 10 hours per day (2.5 hours, four times) for 9 ± 1 days. Results These patients developed a phenotype considered pathognomonic of CIM; that is, severe muscle wasting and a preferential myosin loss (P < 0.001). In addition, myosin PTMs specific to the ICU condition were observed in parallel with an increased sarcolemmal expression and cytoplasmic translocation of neuronal nitric oxide synthase. Passive mechanical loading for 9 ± 1 days resulted in a 35% higher specific force (P < 0.001) compared with the unloaded leg, although it was not sufficient to prevent the loss of muscle mass. Conclusion Mechanical silencing is suggested to be a primary mechanism underlying CIM; that is

  15. Diffusion tensor imaging suggests extrapontine extension of pediatric diffuse intrinsic pontine gliomas

    PubMed Central

    Wagner, Matthias W.; Bell, W. Robert; Kern, Jason; Bosemani, Thangamadhan; Mhlanga, Joyce; Carson, Kathryn A.; Cohen, Kenneth J.; Raabe, Eric H.; Rodriguez, Fausto; Huisman, Thierry A.G.M.; Poretti, Andrea

    2016-01-01

    Purpose To apply DTI to detect early extrapontine extension of pediatric diffuse intrinsic pontine glioma along the corticospinal tracts. Methods In children with diffuse intrinsic pontine glioma, low-grade brainstem glioma, and age-matched controls, DTI metrics were measured in the posterior limb of the internal capsule and posterior centrum semiovale. Histological examination was available in one patient. Results 6 diffuse intrinsic pontine glioma, 8 low-grade brainstem glioma, and two groups of 25 controls were included. In diffuse intrinsic pontine glioma compared to controls, fractional anisotropy was lower in the bilateral posterior limb of the internal capsule, axial diffusivity was lower in the bilateral posterior centrum semiovale and posterior limb of the internal capsule, while radial diffusivity was higher in the bilateral posterior limb of the internal capsule. No significant differences were found between low-grade brainstem glioma and controls. In diffuse intrinsic pontine glioma compared to low-grade brainstem glioma, axial diffusivity was lower in the bilateral posterior limb of the internal capsule. Histological examination in one child showed tumor cells in the posterior limb of the internal capsule. Conclusion Reduction in fractional anisotropy and axial diffusivity and increase in radial diffusivity in diffuse intrinsic pontine glioma may reflect tumor extension along the corticospinal tracts as shown by histology. DTI may detect early extrapontine tumor extension in diffuse intrinsic pontine glioma before it becomes apparent on conventional MRI sequences. PMID:26971411

  16. The origin of Cenozoic basalts from central Inner Mongolia, East China: The consequence of recent mantle metasomatism genetically associated with seismically observed paleo-Pacific slab in the mantle transition zone

    NASA Astrophysics Data System (ADS)

    Guo, Pengyuan; Niu, Yaoling; Sun, Pu; Ye, Lei; Liu, Jinju; Zhang, Yu; Feng, Yue-xing; Zhao, Jian-xin

    2016-01-01

    We present new major element, trace element and Sr-Nd-Hf isotope data on Cenozoic basalts from central Inner Mongolia (CIM) in eastern China to study the origin of the incompatible-element enriched component in these basalts by testing whether or not the paleo-Pacific plate lying in the mantle transition zone beneath eastern China is the immediate cause. The Cenozoic CIM basalts have a large variation in major element, trace element and isotope compositions. Fractional crystallization of olivine and clinopyroxene can readily explain much of the major element compositional variation, while trace element and isotope ratio variation largely reflect source heterogeneities and source histories. The variably low 87Sr/86Sr, high εNd, high εHf and elevated ratios of high field strength element over large ion lithophile element (HFSE/LILE, e.g., Nb/U, Nb/La) indicate that the CIM basalts are of asthenospheric origin, which is characterized by mixing between DMM and EM1. However, the CIM basalts are enriched in incompatible elements and enriched in the progressively more incompatible elements (e.g., variably high [La/Sm]N = 1.66-3.38), suggesting that the magma source(s) must have been enriched prior to the major episode of the magmatism. Participation of subducted ocean crust in the mantle source region of these basalts is recognized, but cannot be the major source material because the subducted ocean crust is expectedly too depleted in incompatible elements (e.g., [La/Sm]N ≪ 1) to produce magmas highly enriched in incompatible elements with [La/Sm]N ≫ 1. With the new data, we consider that low mass fraction (low-F) melt metasomatism in the seismic low velocity zone (LVZ) beneath eastern China as the most likely process to generate incompatible-element enriched source(s) for mantle melts parental to the Cenozoic CIM basalts. The low-F metasomatic agent most likely resulted from dehydration melting of the transition-zone paleo-Pacific slab, which has been taking place

  17. The METAFOR project: providing community metadata standards for climate models, simulations and CMIP5

    NASA Astrophysics Data System (ADS)

    Callaghan, Sarah; Guilyardi, Eric

    2010-05-01

    The results of climate models are now of more than purely academic interest: governments and the private sector also have a need to discover the results in order to prepare for and mitigate against the potentially severe impacts of global climate change. Climate modelling is a complex process, which requires accurate and complete metadata (data describing data) in order to identify, assess and use the climate data stored in digital repositories. The EU funded METAFOR project has developed a Common Information Model (CIM) to describe in a standard way climate data and the models and modelling environments that produce this data. To establish the CIM, METAFOR first considered the metadata models developed by many groups engaged in similar efforts in Europe and worldwide (for example the US Earth System Curator), explored fragmentation and gaps as well as duplication of information present in these metadata models, and reviewed current problems in identifying, accessing or using climate data present in existing repositories. The CIM documents the "simulation context and models", i.e. the whys and wherefores and issues associated with any particular simulation. Climate modelling is a complex process with a wide degree of variability between different models and different modelling groups. To accommodate this, the CIM has been designed to be highly generic and flexible. The climate modelling process which is "an activity undertaken using software on computers to produce data" is described as separate UML packages. This fairly generic structure can be paired with more specific "controlled vocabularies" in order to restrict the range of valid CIM instances. METAFOR has been charged by the Working Group on Coupled Modelling (WGCM) via the Coupled Model Inter-comparison Project (CMIP) panel to define and collect model and experiment metadata for CMIP5. To do this, a web-based questionnaire will collect information and metadata from the CMIP5 modelling groups on the details

  18. Towards Better Coupling of Hydrological Simulation Models

    NASA Astrophysics Data System (ADS)

    Penton, D.; Stenson, M.; Leighton, B.; Bridgart, R.

    2012-12-01

    Standards for model interoperability and scientific workflow software provide techniques and tools for coupling hydrological simulation models. However, model builders are yet to realize the benefits of these and continue to write ad hoc implementations and scripts. Three case studies demonstrate different approaches to coupling models, the first using tight interfaces (OpenMI), the second using a scientific workflow system (Trident) and the third using a tailored execution engine (Delft Flood Early Warning System - Delft-FEWS). No approach was objectively better than any other approach. The foremost standard for coupling hydrological models is the Open Modeling Interface (OpenMI), which defines interfaces for models to interact. An implementation of the OpenMI standard involves defining interchange terms and writing a .NET/Java wrapper around the model. An execution wrapper such as OatC.GUI or Pipistrelle executes the models. The team built two OpenMI implementations for eWater Source river system models. Once built, it was easy to swap river system models. The team encountered technical challenges with versions of the .Net framework (3.5 calling 4.0) and with the performance of the execution wrappers when running daily simulations. By design, the OpenMI interfaces are general, leaving significant decisions around the semantics of the interfaces to the implementer. Increasingly, scientific workflow tools such as Kepler, Taverna and Trident are able to replace custom scripts. These tools aim to improve the provenance and reproducibility of processing tasks. In particular, Taverna and the myExperiment website have had success making many bioinformatics workflows reusable and sharable. The team constructed Trident activities for hydrological software including IQQM, REALM and eWater Source. They built an activity generator for model builders to build activities for particular river systems. The models were linked at a simulation level, without any daily time

  19. Proust, neurology and Stendhal's syndrome.

    PubMed

    Teive, Hélio A G; Munhoz, Renato P; Cardoso, Francisco

    2014-01-01

    Marcel Proust is one of the most important French writers of the 20th century. His relationship with medicine and with neurology is possibly linked to the fact that his asthma was considered to be a psychosomatic disease classified as neurasthenia. Stendhal's syndrome is a rare psychiatric syndrome characterized by anxiety and affective and thought disturbances when a person is exposed to a work of art. Here, the authors describe neurological aspects of Proust's work, particularly the occurrence of Stendhal's syndrome and syncope when he as well as one of the characters of In Search of Lost Time see Vermeer's View of Delft during a visit to a museum. PMID:24642490

  20. Residential segregation from the sixteenth to the nineteenth century: evidence from the Netherlands.

    PubMed

    Lesger, Clé; Van Leeuwen, Marco H D

    2012-01-01

    A case study of three early modern Dutch cities (Alkmaar, Delft, and Amsterdam) using geographical information systems and confronting earlier historical, sociological, and geographical models finds clear patterns of segregation below the level of the city block, thus necessitating block-face mapping. The remarkable continuity in patterns of residential segregation is best explained by the workings of the real-estate market, allowing the well-to-do and middle classes to realize their preferences. In Amsterdam, the merchant elites were able to use their political dominance to plan a scenic and expansive residential environment free from noisy and odorous activities. PMID:22180918

  1. Design and experimental results for the S805 airfoil

    SciTech Connect

    Somers, D.M.

    1997-01-01

    An airfoil for horizontal-axis wind-turbine applications, the S805, has been designed and analyzed theoretically and verified experimentally in the low-turbulence wind tunnel of the Delft University of Technology Low Speed Laboratory, The Netherlands. The two primary objectives of restrained maximum lift, insensitive to roughness, and low profile drag have been achieved. The airfoil also exhibits a docile stall. Comparisons of the theoretical and experimental results show good agreement. Comparisons with other airfoils illustrate the restrained maximum lift coefficient as well as the lower profile-drag coefficients, thus confirming the achievement of the primary objectives.

  2. Design and experimental results for the S809 airfoil

    SciTech Connect

    Somers, D M

    1997-01-01

    A 21-percent-thick, laminar-flow airfoil, the S809, for horizontal-axis wind-turbine applications, has been designed and analyzed theoretically and verified experimentally in the low-turbulence wind tunnel of the Delft University of Technology Low Speed Laboratory, The Netherlands. The two primary objectives of restrained maximum lift, insensitive to roughness, and low profile drag have been achieved. The airfoil also exhibits a docile stall. Comparisons of the theoretical and experimental results show good agreement. Comparisons with other airfoils illustrate the restrained maximum lift coefficient as well as the lower profile-drag coefficients, thus confirming the achievement of the primary objectives.

  3. System for Automatic Detection and Analysis of Targets in FMICW Radar Signal

    NASA Astrophysics Data System (ADS)

    Rejfek, Luboš; Mošna, Zbyšek; Urbář, Jaroslav; Koucká Knížová, Petra

    2016-01-01

    This paper presents the automatic system for the processing of the signals from the frequency modulated interrupted continuous wave (FMICW) radar and describes methods for the primary signal processing. Further, we present methods for the detection of the targets in strong noise. These methods are tested both on the real and simulated signals. The real signals were measured using the developed at the IAP CAS experimental prototype of FMICW radar with operational frequency 35.4 GHz. The measurement campaign took place at the TU Delft, the Netherlands. The obtained results were used for development of the system for the automatic detection and analysis of the targets measured by the FMICW radar.

  4. Elastic Anisotropy of Trabecular Bone in the Elderly Human Vertebra.

    PubMed

    Unnikrishnan, Ginu U; Gallagher, John A; Hussein, Amira I; Barest, Glenn D; Morgan, Elise F

    2015-11-01

    Knowledge of the nature of the elastic symmetry of trabecular bone is fundamental to the study of bone adaptation and failure. Previous studies have classified human vertebral trabecular bone as orthotropic or transversely isotropic but have typically obtained samples from only selected regions of the centrum. In this study, the elastic symmetry of human vertebral trabecular bone was characterized using microfinite element (μFE) analyses performed on 1019 cubic regions of side length equal to 5 mm, obtained via thorough sampling of the centrums of 18 human L1 vertebrae (age = 81.17 ± 7.7 yr; eight males and ten females). An optimization procedure was used to find the closest orthotropic representation of the resulting stiffness tensor for each cube. The orthotropic elastic constants and orientation of the principal elastic axes were then recorded for each cube and were compared to the constants predicted from Cowin's fabric-based constitutive model (Cowin, 1985, "The Relationship Between the Elasticity Tensor and the Fabric Tensor," Mech. Mater., 4(2), pp. 137-147.) and the orientation of the principal axes of the fabric tensor, respectively. Deviations from orthotropy were quantified by the "orthotropic error" (van Rietbergen et al., 1996, "Direct Mechanics Assessment of Elastic Symmetries and Properties of Trabecular Bone Architecture," J. Biomech., 29(12), pp. 1653-1657), and deviations from transverse isotropy were determined by statistical comparison of the secondary and tertiary elastic moduli. The orthotropic error was greater than 50% for nearly half of the cubes, and the secondary and tertiary moduli differed from one another (p < 0.0001). Both the orthotropic error and the difference between secondary and tertiary moduli decreased with increasing bone volume fraction (BV/TV; p ≤ 0.007). Considering only the cubes with an orthotropic error less than 50%, only moderate correlations were observed between the fabric-based and the

  5. Clinical efficacy of percutaneous vertebroplasty combined with intensity-modulated radiotherapy for spinal metastases in patients with NSCLC

    PubMed Central

    Li, Yi; Qing, Yi; Zhang, Zhimin; Li, Mengxia; Xie, Jiaying; Wang, Ge; Wang, Dong

    2015-01-01

    Objective This study aimed to evaluate the safety and efficacy of percutaneous vertebroplasty (PVP) combined with intensity-modulated radiotherapy (IMRT) for metastatic lesions of patients with non-small-cell lung cancer (NSCLC) at centrum vertebrae. Methods A total of 39 patients with spinal metastatic NSCLC (stage IV) were treated with PVP followed by IMRT (30 Gy/10F/2 W) for metastatic lesion at centrum vertebrae under local anesthesia. Retrospective analysis was done with medical records and radiological data. The change of visual analog scale (VAS), activities of daily living, and kyphotic angle was measured preoperatively. The presence of complications was assessed preoperatively (baseline) at 24 hours, 1 week, and 1, 3, 6, 12, and 24 months postoperatively, or until the patient died or was lost to follow-up. Survival was assessed in the group. Results A total of 39 consecutive patients were successfully treated with PVP via a translateral approach and IMRT. Their mean VAS score decreased from 7.93±1.09 preoperatively to 4.14±1.15 by the 24-hour postoperative time point and was 3.92±1.23 at 1 week, 4.27±1.93 at 1 month, 3.24±1.35 at 3 months, 2.27±0.96 at 6 months, and 2.59±1.55 at 12 months after the procedure. The mean VAS score at all of the postoperative time points was decreased significantly from the preoperative baseline score (P<0.05). Activities of daily living evaluation showed that the patients had a significantly high life quality after the combined approach (50.9±11.7 vs 82.3±9.9, P<0.05). No severe complications were observed. Mild complications included two cases (5.13%) of asymptomatic cement leakage into the epidural space and one case (2.56%) of paravertebral leakage. Median survival time was extended to 13 months. Conclusion The safety and efficacy of PVP combined with IMRT in patients with NSCLC with metastatic lesions at centrum vertebrae and the ability to prevent the diseased vertebrae from further deformation and tumor

  6. The effect of enzyme inhibition on the metabolism and activation of tacrine by human liver microsomes.

    PubMed Central

    Spaldin, V; Madden, S; Pool, W F; Woolf, T F; Park, B K

    1994-01-01

    1. Tacrine (1,2,3,4-tetrahydro-9-aminoacridine-hydrochloride: THA) underwent metabolism in vitro by a panel (n = 12) of human liver microsomes genotyped for CYP2D6, in the presence of NADPH, to both protein-reactive and stable metabolites. 2. There was considerable variation in the extent of THA metabolism amongst human livers. Protein-reactive metabolite formation showed a 10-fold variation (0.6 +/- 0.1%-5.2 +/- 0.8% of incubated radioactivity mg-1 protein) whilst stable metabolites showed a 3-fold variation (24.3 +/- 1.7%-78.6 +/- 2.6% of incubated radioactivity). 3. Using cytochrome P450 isoform specific inhibitors CYP1A2 was identified as the major enzyme involved in all routes of THA metabolism. 4. There was a high correlation between aromatic and alicyclic hydroxylation (r = 0.92, P < 0.0001) consistent with these biotransformations being catalysed by the same enzymes. 5. Enoxacin (ENOX), cimetidine (CIM) and chloroquine (CQ) inhibited THA metabolism by a preferential decrease in the bioactivation to protein-reactive, and hence potentially toxic, species. The inhibitory potency of ENOX and CIM was increased significantly upon pre-incubation with microsomes and NADPH. 6. Covalent binding correlated with 7-OH-THA formation before (r = 0.792, P < 0.0001) and after (r = 0.73, P < 0.0001) inhibition by CIM, consistent with a two-step mechanism in the formation of protein-reactive metabolite(s) via a 7-OH intermediate. 7. The use of enzyme inhibitors may provide a useful tool for examining the relationship between the metabolism and toxicity of THA in vivo. PMID:7946932

  7. LCK, survivin and PI-3K in the molecular biomarker profiling of oral lichen planus and oral squamous cell carcinoma

    PubMed Central

    Oluwadara, Oluwadayo; Giacomelli, Luca; Christensen, Russell; Kossan, George; Avezova, Raisa; Chiappelli, Francesco

    2009-01-01

    T cell signaling is critical in oral lichen planus (OLP) based on the pathogenesis of this chronic inflammatory autoimmune mucocutaneous lesion. Lck plays a key role in T cell signaling; ultimately this signaling affects other targets such as PI-3K. Excessive activity in PI-3K inhibits apoptosis and promotes uncontrolled cell growth. Molecular biomarker profiling in OLP, Chronic Interface Mucosities (CIM), Epithelial Dysplasia (EpD) and Oral Squamous Cell Carcinoma (SCCA) with application of the principle of biomarker voting may represent a new frontier in the diagnosis, assessment and the arguable debate of OLP transformation to cancer. The presence of Lck, PI-3K and Survivin, a cancer specific anti-apoptotic protein was assessed, using immunohistochemistry and tissue micro-array on patient samples, in OLP, SCCA, CIM and EpD. Lck expression was very high in 78.6 % of OLP patients compared to 3.7% in SCCA; PI-3K was high in 63% of SCCA, 100% of EpD, and 35.7% OLP cases. Survivin was high in 64.3% of OLP cases, 96.3% of SCCA, and 100% of EpD. CIM cases may be slightly different molecularly to OLP. Taken together, our data suggest that biomarker protein voting can be effectively used to isolate high-risk OLP cases. Specifically, we show data with four remarkable cases demonstrating that molecular factors are predictive of histopathology. We conclude that it is safer to treat OLP as premalignant lesions, to adopt aggressive treatment measure in histopathologic described well and moderately differentiated SCCA, and to monitor progress of these diseases molecularly using individualized auto-proteomic approach. The use of Lck inhibitors in OLP management needs to be investigated in the future. PMID:20975919

  8. Peroxynitric acid (HO2NO2) measurements during the UBWOS 2013 and 2014 studies using iodide ion chemical ionization mass spectrometry

    NASA Astrophysics Data System (ADS)

    Veres, P. R.; Roberts, J. M.; Wild, R. J.; Edwards, P. M.; Brown, S. S.; Bates, T. S.; Quinn, P. K.; Johnson, J. E.; Zamora, R. J.; de Gouw, J.

    2015-07-01

    In this paper laboratory work is documented establishing iodide ion chemical ionization mass spectrometry (I- CIMS) as a sensitive method for the unambiguous detection of peroxynitric acid (HO2NO2; PNA). A dynamic calibration source for HO2NO2, HO2, and HONO was developed and calibrated using a novel total NOy cavity ring-down spectroscopy (CaRDS) detector. Photochemical sources of these species were used for the calibration and validation of the I- CIMS instrument for detection of HO2NO2. Ambient observations of HO2NO2 using I- CIMS during the 2013 and 2014 Uintah Basin Wintertime Ozone Study (UBWOS) are presented. Strong inversions leading to a build-up of many primary and secondary pollutants as well as low temperatures drove daytime HO2NO2 as high as 1.5 ppbv during the 2013 study. A comparison of HO2NO2 observations to mixing ratios predicted using a chemical box model describing an ozone formation event observed during the 2013 wintertime shows agreement in the daily maxima HO2NO2 mixing ratio, but a differences of several hours in the timing of the observed maxima. Observations of vertical gradients suggest that the ground snow surface potentially serves as both a net sink and source of HO2NO2 depending on the time of day. Sensitivity tests using a chemical box model indicate that the lifetime of HO2NO2 with respect to deposition has a non-negligible impact on ozone production rates on the order of 10 %.

  9. Intercomparison of field measurements of nitrous acid (HONO) during the SHARP campaign

    NASA Astrophysics Data System (ADS)

    Pinto, J. P.; Dibb, J.; Lee, B. H.; Rappenglück, B.; Wood, E. C.; Levy, M.; Zhang, R.-Y.; Lefer, B.; Ren, X.-R.; Stutz, J.; Tsai, C.; Ackermann, L.; Golovko, J.; Herndon, S. C.; Oakes, M.; Meng, Q.-Y.; Munger, J. W.; Zahniser, M.; Zheng, J.

    2014-05-01

    Because of the importance of HONO as a radical reservoir, consistent and accurate measurements of its concentration are needed. As part of SHARP (Study of Houston Atmospheric Radical Precursors), time series of HONO were obtained by six different measurement techniques on the roof of the Moody Tower at the University of Houston. Techniques used were long path differential optical absorption spectroscopy (DOAS), stripping coil-visible absorption photometry (SC-AP), long path absorption photometry (LOPAP®), mist chamber/ion chromatography (MC-IC), quantum cascade-tunable infrared laser differential absorption spectroscopy (QC-TILDAS), and ion drift-chemical ionization mass spectrometry (ID-CIMS). Various combinations of techniques were in operation from 15 April through 31 May 2009. All instruments recorded a similar diurnal pattern of HONO concentrations with higher median and mean values during the night than during the day. Highest values were observed in the final 2 weeks of the campaign. Inlets for the MC-IC, SC-AP, and QC-TILDAS were collocated and agreed most closely with each other based on several measures. Largest differences between pairs of measurements were evident during the day for concentrations < ~100 parts per trillion (ppt). Above ~ 200 ppt, concentrations from the SC-AP, MC-IC, and QC-TILDAS converged to within about 20%, with slightly larger discrepancies when DOAS was considered. During the first 2 weeks, HONO measured by ID-CIMS agreed with these techniques, but ID-CIMS reported higher values during the afternoon and evening of the final 4 weeks, possibly from interference from unknown sources. A number of factors, including building related sources, likely affected measured concentrations.

  10. Gas-particle partitioning of organic acids during the Southern Oxidant and Aerosol Study (SOAS): measurements and modeling

    NASA Astrophysics Data System (ADS)

    Thompson, S.; Yatavelli, R.; Stark, H.; Kimmel, J.; Krechmer, J.; Day, D. A.; Isaacman, G. A.; Goldstein, A. H.; Khan, M. A. H.; Holzinger, R.; Lopez-Hilfiker, F.; Mohr, C.; Thornton, J. A.; Jayne, J. T.; Worsnop, D. R.; Jimenez, J. L.

    2014-12-01

    Gas-Particle partitioning measurements of organic acids were carried out during the Southern Oxidant and Aerosol Study (SOAS, June-July 2013) at the Centerville, AL Supersite in the Southeast US, a region with significant isoprene and terpene emissions. Organic acid measurements were made with a Chemical Ionization High Resolution Time-of-Flight Mass Spectrometer (HRToF-CIMS) with a Filter Inlet for Gases and AEROsols (FIGAERO) and acetate (CH3COO-) as the reagent ion. We investigate both individual species and bulk organic acids and partitioning to organic and water phases in the aerosol. Measured partitioning is compared to data from three other instruments that can also quantify gas-particle partitioning with high time resolution: another HRToF-CIMS using iodide (I-) as the reagent ion to ionize acids and other highly oxidized compounds, a Semivolatile Thermal Desorption Aerosol GC/MS (SV-TAG), and a Thermal Desorption Proton Transfer Time-of-Flight Mass Spectrometer (TD-PTRMS The partitioning measurements for three of the instruments are generally consistent, with results in the same range for most species and following similar temporal trends and diurnal cycles. The TD-PTRMS measures on average ½ the partitioning to the particle phase of the acetate CIMS. Both the measurements and the model of partitioning to the organic phase respond quickly to temperature, and the model agrees with the measured partitioning within the error of the measurement for multiple compounds, although many compounds do not match the modeled partitioning, especially at lower m/z. This discrepancy may be due to thermal decomposition of larger molecules into smaller ones when heated.

  11. Measurements of Oxidized Organic Compounds during SOAS 2013 using nitrate ion chemical ionization coupled with High Resolution Time-of-Flight Mass Spectrometry

    NASA Astrophysics Data System (ADS)

    Massoli, P.; Stark, H.; Cnagaratna, M.; Junninen, H.; Hakala, J. P.; Mauldin, R.; Ehn, M.; Sipila, M.; Krechmer, J.; Kimmel, J.; Jimenez, J. L.; Jayne, J. T.; Worsnop, D. R.

    2013-12-01

    We present ambient measurements of gaseous organic compounds by means of a High Resolution Time-of-Flight Chemical Ionization Mass Spectrometry (HR-ToF-CIMS) using nitrate ion (NO3-) chemistry. This technique allows to selectively detect oxidized gas-phase species, e.g., oxidized organic molecules and sulfuric acid via clustering with NO3- and its high order clusters. The capability of making such measurements is important because both sulfuric acid and organic gas molecules have a recognized key role in new particle formation (NPF) processes and likely have an important role in particulate phase chemistry and formation of secondary organic aerosols (SOA). The HR-ToF-CIMS was deployed during the Southern Oxidant and Aerosol Study (SOAS) at the forest supersite in Centreville, AL, from June 1 to July 15, 2013. The main goal of the SOAS campaign was to investigate the composition and sources of SOA in the Southeast US, where emissions are mainly represented by biogenic volatile organic compounds (BVOC) emissions and in less extent by anthropogenic emissions (AVOC). During SOAS, the HR-ToF-CIMS detected a range of organic ions that based on previous literature could be identified as oxidation products of both isoprene and terpenes. The isoprene products were 5 to 10 times more abundant than the terpene products. The isoprene-related molecules showed a diurnal cycle with a day time peak, typically after 1500 local time, while the terpene products were higher at night (between 2000 and 0600 local time). These results are consistent with the diurnal trends of primary BVOC emissions from other co-located instruments. The ambient data are also compared to laboratory measurements where oxidized organic vapors are produced using a Potential Aerosol Mass (PAM) flow reactor by the OH oxidation of biogenic gas-phase precursors (isoprene, a-pinene) over multiple days of equivalent atmospheric exposure.

  12. Phase partitioning and volatility of secondary organic aerosol components formed from α-pinene ozonolysis and OH oxidation: the importance of accretion products and other low volatility compounds

    NASA Astrophysics Data System (ADS)

    Lopez-Hilfiker, F. D.; Mohr, C.; Ehn, M.; Rubach, F.; Kleist, E.; Wildt, J.; Mentel, Th. F.; Carrasquillo, A.; Daumit, K.; Hunter, J.; Kroll, J. H.; Worsnop, D.; Thornton, J. A.

    2015-02-01

    We measured a large suite of gas and particle phase multi-functional organic compounds with a Filter Inlet for Gases and AEROsols (FIGAERO) coupled to a high-resolution time-of-flight chemical ionization mass spectrometer (HR-ToF-CIMS) developed at the University of Washington. The instrument was deployed on environmental simulation chambers to study monoterpene oxidation as a secondary organic aerosol (SOA) source. We focus here on results from experiments utilizing an ionization method most selective towards acids (acetate negative ion proton transfer), but our conclusions are based on more general physical and chemical properties of the SOA. Hundreds of compounds were observed in both gas and particle phases, the latter being detected upon temperature programmed thermal desorption of collected particles. Particulate organic compounds detected by the FIGAERO HR-ToF-CIMS are highly correlated with, and explain at least 25-50% of, the organic aerosol mass measured by an Aerodyne Aerosol Mass Spectrometer (AMS). Reproducible multi-modal structures in the thermograms for individual compounds of a given elemental composition reveal a significant SOA mass contribution from large molecular weight organics and/or oligomers (i.e. multi-phase accretion reaction products). Approximately 50% of the HR-ToF-CIMS particle phase mass is associated with compounds having effective vapor pressures 4 or more orders of magnitude lower than commonly measured monoterpene oxidation products. The relative importance of these accretion-type and other extremely low volatility products appears to vary with photochemical conditions. We present a desorption temperature based framework for apportionment of thermogram signals into volatility bins. The volatility-based apportionment greatly improves agreement between measured and modeled gas-particle partitioning for select major and minor components of the SOA, consistent with thermal decomposition during desorption causing the conversion of

  13. Phase partitioning and volatility of secondary organic aerosol components formed from α-pinene ozonolysis and OH oxidation: the importance of accretion products and other low volatility compounds

    NASA Astrophysics Data System (ADS)

    Lopez-Hilfiker, F. D.; Mohr, C.; Ehn, M.; Rubach, F.; Kleist, E.; Wildt, J.; Mentel, Th. F.; Carrasquillo, A. J.; Daumit, K. E.; Hunter, J. F.; Kroll, J. H.; Worsnop, D. R.; Thornton, J. A.

    2015-07-01

    We measured a large suite of gas- and particle-phase multi-functional organic compounds with a Filter Inlet for Gases and AEROsols (FIGAERO) coupled to a high-resolution time-of-flight chemical ionization mass spectrometer (HR-ToF-CIMS) developed at the University of Washington. The instrument was deployed on environmental simulation chambers to study monoterpene oxidation as a secondary organic aerosol (SOA) source. We focus here on results from experiments utilizing an ionization method most selective towards acids (acetate negative ion proton transfer), but our conclusions are based on more general physical and chemical properties of the SOA. Hundreds of compounds were observed in both gas and particle phases, the latter being detected by temperature-programmed thermal desorption of collected particles. Particulate organic compounds detected by the FIGAERO-HR-ToF-CIMS are highly correlated with, and explain at least 25-50 % of, the organic aerosol mass measured by an Aerodyne aerosol mass spectrometer (AMS). Reproducible multi-modal structures in the thermograms for individual compounds of a given elemental composition reveal a significant SOA mass contribution from high molecular weight organics and/or oligomers (i.e., multi-phase accretion reaction products). Approximately 50 % of the HR-ToF-CIMS particle-phase mass is associated with compounds having effective vapor pressures 4 or more orders of magnitude lower than commonly measured monoterpene oxidation products. The relative importance of these accretion-type and other extremely low volatility products appears to vary with photochemical conditions. We present a desorption-temperature-based framework for apportionment of thermogram signals into volatility bins. The volatility-based apportionment greatly improves agreement between measured and modeled gas-particle partitioning for select major and minor components of the SOA, consistent with thermal decomposition during desorption causing the conversion of

  14. Effect of ions on the measurement of sulphuric acid in the CLOUD experiment at CERN

    NASA Astrophysics Data System (ADS)

    Rondo, L.; Kürten, A.; Ehrhart, S.; Schobesberger, S.; Franchin, A.; Junninen, H.; Petäjä, T.; Sipilä, M.; Worsnop, D. R.; Curtius, J.

    2014-07-01

    Ternary aerosol nucleation experiments were conducted in the CLOUD chamber at CERN in order to investigate the influence of ions on new particle formation. Neutral and ion-induced nucleation experiments, i.e., with and without the presence of ions, were carried out under precisely controlled conditions. The sulphuric acid concentration was measured with a Chemical Ionization Mass Spectrometer (CIMS) during the new particle formation experiments. The added ternary trace gases were ammonia (NH3), dimethylamine (DMA, C2H7N) or oxidised products of pinanediol (PD, C10H18O2). When pinanediol was introduced into the chamber, an increase in the mass spectrometric signal used to determine the sulphuric acid concentration (m/z 97, i.e., HSO4-) was observed due to ions from the CLOUD chamber. The enhancement was only observed during ion-induced nucleation measurements by using either galactic cosmic rays (GCR) or the proton synchrotron (PS) pion beam for the ion generation, respectively. The ion effect typically involved an increase in the apparent sulphuric acid concentration by a factor of ~2 to 3 and was qualitatively verified by the ion measurements by an Atmospheric Pressure interface-Time Of Flight (APi-TOF) mass spectrometer. By applying a high voltage (HV) clearing field inside the CLOUD chamber the ion effect on the CIMS measurement was completely eliminated since, under these conditions, small ions are swept from the chamber in about one second. In order to exclude the ion effect and to provide corrected sulphuric acid concentrations during the GCR and PS beam nucleation experiments, a parameterisation was derived that utilizes the trace gas concentrations and the UV light intensity as input parameters. Atmospheric sulphuric acid measurements with a CIMS showed an insignificant ion effect.

  15. Effect of ions on the measurement of sulfuric acid in the CLOUD experiment at CERN

    NASA Astrophysics Data System (ADS)

    Rondo, L.; Kürten, A.; Ehrhart, S.; Schobesberger, S.; Franchin, A.; Junninen, H.; Petäjä, T.; Sipilä, M.; Worsnop, D. R.; Curtius, J.

    2014-11-01

    Ternary aerosol nucleation experiments were conducted in the CLOUD chamber at CERN in order to investigate the influence of ions on new particle formation. Neutral and ion-induced nucleation experiments, i.e. without and with the presence of ions, respectively, were carried out under precisely controlled conditions. The sulfuric acid concentration was measured with a chemical ionisation mass spectrometer (CIMS) during the new particle formation experiments. The added ternary trace gases were ammonia (NH3), dimethylamine (DMA, C2H7N) or oxidised products of pinanediol (PD, C10H18O2). When pinanediol was introduced into the chamber, an increase in the mass spectrometric signal used to determine the sulfuric acid concentration (m/z 97, i.e. HSO4-) was observed due to ions from the CLOUD chamber. The enhancement was only observed during ion-induced nucleation measurements by using either galactic cosmic rays (GCRs) or the proton synchrotron (PS) pion beam for the ion generation, respectively. The ion effect typically involved an increase in the apparent sulfuric acid concentration by a factor of ~ 2 to 3 and was qualitatively verified by the ion measurements with an atmospheric-pressure interface-time of flight (APi-TOF) mass spectrometer. By applying a high-voltage (HV) clearing field inside the CLOUD chamber, the ion effect on the CIMS measurement was completely eliminated since, under these conditions, small ions are swept from the chamber in about 1 s. In order to exclude the ion effect and to provide corrected sulfuric acid concentrations during the GCR and PS beam nucleation experiments, a parameterisation was derived that utilises the trace gas concentrations and the UV light intensity as input parameters. Atmospheric sulfuric acid measurements with a CIMS showed an insignificant ion effect.

  16. Specific cerebral heat shock proteins and histamine receptor cross-talking mechanisms promote distinct lead-dependent neurotoxic responses in teleosts

    SciTech Connect

    Giusi, Giuseppina; Alo, Raffaella; Crudo, Michele; Facciolo, Rosa Maria; Canonaco, Marcello

    2008-03-01

    Recent interests are beginning to be directed towards toxic neurobiological dysfunctions caused by lead (Pb) in aquatic vertebrates. In the present work, treatment with a maximum acceptable toxic concentration of this heavy metal was responsible for highly significant (p < 0.01) abnormal motor behaviors such as hyperactive movements in the teleost Thalassoma pavo and the same treatment accounted for significantly (p < 0.05) enhanced hyperventilating states. On the other hand, greater abnormal motor behaviors were detected in the presence of the histamine (HA) receptor subtype 2 (H{sub 2}R) antagonist cimetidine (Cim), as shown by the very robust (p < 0.001) increases of the two behavioral states. Interestingly, elevated expression levels of stress-related factors, i.e. heat shock protein70/90 (HSP90/70) orthologs were reported for the first time in hypothalamic and mesencephalic areas of Pb-treated teleosts. In particular, an up-regulation of HSP70 was readily detected when this heavy metal was given concomitantly with Cim, while the histamine subtype 3 antagonist (H{sub 3}R) thioperamide (Thio), instead, blocked Pb-dependent up-regulatory trends of both chaperones in mostly hypothalamic areas. Moreover, intense neuronal damages of the above brain regions coincided with altered expressions of HSP70 and HSP90 when treated only with Cim. Overall these first results show that distinct H{sub n}R are able to exert a net neuroprotective role arising from their interaction with chaperones in fish exposed to Pb-dependent stressful conditions making this a potentially key interaction especially for T. pavo, aquatic species which plays an important ecological role towards the survival of other commercially vital fishes.

  17. A centrifugal ice microtome for measurements of atmospheric CO2 on air trapped in polar ice cores

    NASA Astrophysics Data System (ADS)

    Bereiter, B.; Stocker, T. F.; Fischer, H.

    2012-10-01

    For atmospheric CO2 reconstructions using ice cores, the technique to release the trapped air from the ice samples is crucial for the precision and accuracy of the measurements. We present here a new dry extraction technique in combination with a new gas analytical system that together show significant improvements with respect to current systems. Ice samples (3-15 g) are pulverized using a novel Centrifugal Ice Microtome (CIM) by shaving the ice in a cooled vacuum chamber (-27 °C) in which no friction occurs due to the use of magnetic bearings. Both, the shaving principle of the CIM and the use of magnetic bearings have not been applied so far in this field. Shaving the ice samples produces finer ice powder and releases a minimum of 90% of the trapped air compared to 50%-70% when needle crushing is employed. In addition, the friction-free motion with an optimized design to reduce contaminations of the inner surfaces of the device result in a reduced system offset of about 2.0 ppmv compared to 4.9ppmv. The gas analytical part shows a factor two higher precision than our corresponding part of the previous system and all processes except the loading and cleaning of the CIM now run automatically. Compared to our previous system the new system shows a 3 times better measurement reproducibility of about 1.1 ppmv (1σ) which is similar to the best reproducibility of other systems applied in this field. With this high reproducibility, replicate measurements are not required anymore for most prospective measurement campaigns resulting in a possible output of 12-20 measurements per day compared to a maximum of 6 with other systems.

  18. A centrifugal ice microtome for measurements of atmospheric CO2 on air trapped in polar ice cores

    NASA Astrophysics Data System (ADS)

    Bereiter, B.; Stocker, T. F.; Fischer, H.

    2013-02-01

    For atmospheric CO2 reconstructions using ice cores, the technique to release the trapped air from the ice samples is essential for the precision and accuracy of the measurements. We present here a new dry extraction technique in combination with a new gas analytical system that together show significant improvements with respect to current systems. Ice samples (3-15 g) are pulverised using a novel centrifugal ice microtome (CIM) by shaving the ice in a cooled vacuum chamber (-27 °C) in which no friction occurs due to the use of magnetic bearings. Both, the shaving principle of the CIM and the use of magnetic bearings have not been applied so far in this field. Shaving the ice samples produces finer ice powder and releases a minimum of 90% of the trapped air compared to 50%-70% when needle crushing is employed. In addition, the friction-free motion with an optimized design to reduce contaminations of the inner surfaces of the device result in a reduced system offset of about 2.0 ppmv compared to 4.9 ppmv. The gas analytical part shows a higher precision than the corresponding part of our previous system by a factor of two, and all processes except the loading and cleaning of the CIM now run automatically. Compared to our previous system, the complete system shows a 3 times better measurement reproducibility of about 1.1 ppmv (1 σ) which is similar to the best reproducibility of other systems applied in this field. With this high reproducibility, no replicate measurements are required anymore for most future measurement campaigns resulting in a possible output of 12-20 measurements per day compared to a maximum of 6 with other systems.

  19. Purification of monoclonal antibodies, IgG1, from cell culture supernatant by use of metal chelate convective interaction media monolithic columns.

    PubMed

    Rajak, Poonam; Vijayalakshmi, M A; Jayaprakash, N S

    2012-12-01

    Monoclonal antibodies (MAbs) have diverse applications in diagnostics and therapeutics. The recent advancement in hybridoma technology for large-scale production of MAbs in bioreactors demands rapid and efficient purification methods. Conventional affinity purification systems have drawbacks of low flow rates and denaturation of antibodies owing to harsh elution conditions. Here, we attempted purification of MAbs by use of a high-throughput metal-chelate methacrylate monolithic system. Monolithic macroporous convective interaction media-iminodiacetate (CIM-IDA) disks immobilized with four different metal ions (Cu²⁺, Ni²⁺, Zn²⁺ and Co²⁺) were used and evaluated for purification of anti-human serum albumin IgG1 mouse MAbs from cell culture supernatant after precipitation with 50% ammonium sulfate. Elution with 10 mM imidazole in the equilibration buffer (25 mM MMA = MOPS (Morpholino propane sulfonic acid) + MES (Morpholino ethane sulfonic acid) + Acetate + 0.5 M NaCl, pH 7.4) resulted in a purification of 25.7 ± 2.9-fold and 32.5 ± 2.6-fold in experiments done using Zn²⁺ and Co²⁺ metal ions, respectively. The highest recovery of 85.4 ± 1.0% was obtained with a CIM-IDA-Zn(II) column. SDS-PAGE, ELISA and immuno-blot showed that the antibodies recovered were pure, with high antigen-binding efficiency. Thus, metal chelate CIM monoliths could be a potential alternative to conventional systems for fast and efficient purification of MAbs from the complex cell culture supernatant. PMID:22362585

  20. Phase partitioning and volatility of secondary organic aerosol components formed from α-pinene ozonolysis and OH oxidation: the importance of accretion products and other low volatility compounds

    DOE PAGESBeta

    Lopez-Hilfiker, F. D.; Mohr, C.; Ehn, M.; Rubach, F.; Kleist, E.; Wildt, J.; Mentel, Th. F.; Carrasquillo, A. J.; Daumit, K. E.; Hunter, J. F.; et al

    2015-07-16

    We measured a large suite of gas- and particle-phase multi-functional organic compounds with a Filter Inlet for Gases and AEROsols (FIGAERO) coupled to a high-resolution time-of-flight chemical ionization mass spectrometer (HR-ToF-CIMS) developed at the University of Washington. The instrument was deployed on environmental simulation chambers to study monoterpene oxidation as a secondary organic aerosol (SOA) source. We focus here on results from experiments utilizing an ionization method most selective towards acids (acetate negative ion proton transfer), but our conclusions are based on more general physical and chemical properties of the SOA. Hundreds of compounds were observed in both gas andmore » particle phases, the latter being detected by temperature-programmed thermal desorption of collected particles. Particulate organic compounds detected by the FIGAERO–HR-ToF-CIMS are highly correlated with, and explain at least 25–50 % of, the organic aerosol mass measured by an Aerodyne aerosol mass spectrometer (AMS). Reproducible multi-modal structures in the thermograms for individual compounds of a given elemental composition reveal a significant SOA mass contribution from high molecular weight organics and/or oligomers (i.e., multi-phase accretion reaction products). Approximately 50 % of the HR-ToF-CIMS particle-phase mass is associated with compounds having effective vapor pressures 4 or more orders of magnitude lower than commonly measured monoterpene oxidation products. The relative importance of these accretion-type and other extremely low volatility products appears to vary with photochemical conditions. We present a desorption-temperature-based framework for apportionment of thermogram signals into volatility bins. The volatility-based apportionment greatly improves agreement between measured and modeled gas-particle partitioning for select major and minor components of the SOA, consistent with thermal decomposition during desorption causing the

  1. Phase partitioning and volatility of secondary organic aerosol components formed from α-pinene ozonolysis and OH oxidation: the importance of accretion products and other low volatility compounds

    DOE PAGESBeta

    Lopez-Hilfiker, F. D.; Mohr, C.; Ehn, M.; Rubach, F.; Kleist, E.; Wildt, J.; Mentel, Th. F.; Carrasquillo, A.; Daumit, K.; Hunter, J.; et al

    2015-02-18

    We measured a large suite of gas and particle phase multi-functional organic compounds with a Filter Inlet for Gases and AEROsols (FIGAERO) coupled to a high-resolution time-of-flight chemical ionization mass spectrometer (HR-ToF-CIMS) developed at the University of Washington. The instrument was deployed on environmental simulation chambers to study monoterpene oxidation as a secondary organic aerosol (SOA) source. We focus here on results from experiments utilizing an ionization method most selective towards acids (acetate negative ion proton transfer), but our conclusions are based on more general physical and chemical properties of the SOA. Hundreds of compounds were observed in both gasmore » and particle phases, the latter being detected upon temperature programmed thermal desorption of collected particles. Particulate organic compounds detected by the FIGAERO HR-ToF-CIMS are highly correlated with, and explain at least 25–50% of, the organic aerosol mass measured by an Aerodyne Aerosol Mass Spectrometer (AMS). Reproducible multi-modal structures in the thermograms for individual compounds of a given elemental composition reveal a significant SOA mass contribution from large molecular weight organics and/or oligomers (i.e. multi-phase accretion reaction products). Approximately 50% of the HR-ToF-CIMS particle phase mass is associated with compounds having effective vapor pressures 4 or more orders of magnitude lower than commonly measured monoterpene oxidation products. The relative importance of these accretion-type and other extremely low volatility products appears to vary with photochemical conditions. We present a desorption temperature based framework for apportionment of thermogram signals into volatility bins. The volatility-based apportionment greatly improves agreement between measured and modeled gas–particle partitioning for select major and minor components of the SOA, consistent with thermal decomposition during desorption causing the

  2. Computerized interactive morphometry. An expert system for the diagnosis of lymphoid-rich effusions.

    PubMed

    Walts, A E; Marchevsky, A M

    1989-12-01

    The authors present experimental techniques for the diagnosis of malignant lymphoma and benign lymphocytosis in lymphoid-rich effusions with the use of an inexpensive microcomputer-based video system for computerized interactive morphometry (CIM). Lymphoid cells were randomly selected by a trained observer from real-time images of Papanicolaou-fixed and -stained cytospin smears prepared from pleural, peritoneal, or pericardial effusions. The lymphoid cells were classified by the instrument, based on the size and shape of their nuclear profiles. The morphometric data collected by the instrument were interpreted by a simple rule-based expert system that classified the smears as benign or malignant. One hundred four cases, including 28 malignant lymphomas, 63 benign lymphocytoses, 8 chronic lymphocytic leukemias, and 5 cases with incomplete immunopathologic data, were studied retrospectively. Sixty-three of these effusions had been stained to detect light chain monoclonality. Ninety-one effusions were correctly classified by the expert system. There were four potential false negative diagnoses and one potential false positive diagnosis by the CIM system. Eight effusions from patients with chronic lymphocytic leukemia (CLL) were consistently classified as benign. Although the author's series of patients with a history of CLL is small, their results suggest that CIM is unsuitable for the diagnosis of malignancy in these effusions. If only those effusions from patients with a history of CLL are excluded, the predictive value of a diagnosis of malignant lymphoma was 96.5%, whereas the predictive value of a diagnosis of benign lymphocytosis was 94.0%. PMID:2686396

  3. A Field Measurement of Isocyanic Acid (HNCO): Evidence of a Secondary Source and Presence in Cloud Water

    NASA Astrophysics Data System (ADS)

    Zhao, R.; Lee, A.; Liggio, G.; Wentzell, J. J.; Leaitch, W. R.; Macdonald, A.; Toom-Sauntry, D.; Modini, R. L.; Corrigan, A. L.; Russell, L. M.; Schroder, J.; Bertram, A. K.; Hawkins, L. N.

    2013-12-01

    Isocyanic acid (HNCO) has been shown to cause a variety of adverse health effects via protein carbamylation reactions. It is proposed as a key compound in smoke related health issues due to its well-known sources, biomass burning and cigarette smoke. In spite of this, our understanding of the atmospheric fate of this toxic compound is incomplete. More ambient measurements are needed to elucidate additional sources and to better characterize the sinks of HNCO in the atmosphere. The recent development of the Acetate Ion Chemical Ionization Mass Spectrometry (Acid-CIMS) has enabled on-line measurement of HNCO at ambient mixing ratios. Ambient measurements of HNCO were performed in La Jolla, CA during the spring/summer of 2012, using the Acid-CIMS. HNCO mixing ratios were found to be approximately 150 pptv during the night, but typically increased to over 300 pptv in the early afternoon. From the observed diurnal profile and the correlation of HNCO with temperature and other secondary compounds (e.g. nitric acid), we report evidence of a secondary, photochemical source of HNCO. The observed HNCO likely arose as a combination of primary and secondary sources. We have also detected HNCO in cloudwater by coupling the Acid-CIMS to a Counterflow Virtual Impactor (CVI). To the best of our knowledge, this is the first field evidence of cloud scavenging of HNCO. Our result show that the cloud scavenging of HNCO may be more efficient than predicted from its effective Henry's law constant. Campaign-averaged diurnal profiles of Black Carbon (BC), isocyanic acid (HNCO) and nitric acid (HNO3). Dotted lines show the averaged time of sunrise and sunset during the campaign.

  4. Effects of histamine type-2 receptor antagonists on indomethacin and IL-2 immunotherapy of metastasis.

    PubMed

    Saarloos, M N; Khoo, N K; Lala, P K

    1993-05-01

    Histamine type-2 receptor antagonists (H-2RA) have been used chronically to prevent dyspepsia in cancer patients subjected to immunotherapy with chronic indomethacin (Indo) and intermittent IL-2 in our cancer centre. We tested the effects of these agents during immunotherapy of C3H/HeJ mice transplanted s.c. with 5 x 10(5) C3L5 mammary adenocarcinoma cells. Tumor-transplanted mice were divided into groups receiving: (1) Indo (14 micrograms/ml); (2) H-2RA, i.e. (a) ranitidine at 28.6 micrograms/ml (Ran-lo) or 143 micrograms/ml (Ran-hi), or (b) famotidine (Fam) at 4.3 micrograms/ml, or (c) cimetidine (Cim) at 107 micrograms/ml, all in the drinking water on days 5-24; (3) IL-2 (1.5 x 10(3) Cetus U i.p. every 8 h on days 10-14 and 20-24); (4) combinations of H-2RA + Indo; or (5) combinations of H-2RA + Indo + IL-2. Animals were killed on day 24 for examination of primary s.c. tumor growth, secondary lung metastasis and splenocyte cytotoxicity against YAC-1 lymphoma cells (51Cr release assay). Results revealed: (1) primary tumor growth was reduced in mice treated with Fam + Indo, Indo + IL-2 and any of the H-2RA + Indo + IL-2 (no difference observed within the last two groups); (2) lung metastases decreased in mice treated with IL-2 alone, Indo + IL-2, and Indo + IL-2 + Ran-hi; (3) splenic cytotoxicity was suppressed in tumor-bearing controls, with partial restoration seen in Ran (both doses), Ran-lo + Indo, Ran-lo + Indo + IL-2, and Cim + Indo + IL-2 treated groups. Nearly complete restoration was seen in Cim, Cim + Indo, Indo + IL-2, Ran-hi + Indo + IL-2, and Fam + Indo + IL-2 groups. Thus, addition of H-2RA did not alter the overall therapeutic efficacy of the standard Indo + IL-2 tumor immunotherapy. PMID:8097142

  5. Phytochemical and biological investigation of Begonia heracleifolia.

    PubMed

    Frei, B; Heinrich, M; Herrmann, D; Orjala, J E; Schmitt, J; Sticher, O

    1998-05-01

    From the rhizomes of Begonia heracleifolia six known cucurbitacins ( 1- 6) were isolated. Based on spectral data (1D and 2D (1)H-, (13)C-NMR, ESI- and CI-MS) the structures were established as cucurbitacin B ( 1), cucurbitacin D ( 2), 23,24-dihydrocucurbitacin D ( 3), 23,24-dihydrocucurbitacin F ( 4), 2- O-beta-glucopyranosyl-cucurbitacin B ( 5), and 2- O-beta-glucopyranosyl-cucurbitacin D ( 6). Four of them ( 3- 6) were so far not reported as constituents of Begonia spp. Varyingly strong antiproliferative activity towards tumor and immune cells was observed for three compounds ( 1 - 3), due to different structural features. PMID:17253255

  6. Spatial Distribution of -Crystals in Metallocene-Made Isotactic Polypropylene Crystallized under Combined Thermal and Flow Fields

    SciTech Connect

    Wang, Y.; Pan, J; Mao, Y; Li, Z; Li, L; Hsiao, B

    2010-01-01

    The present Article reports the relationships between molecular orientation, formation, and spatial distribution of {gamma}-crystals in metallocene-made isotactic polypropylene (m-iPP) samples prepared by two industrial processes: conventional injection molding (CIM) and oscillatory shear injection molding (OSIM), in which combined thermal and flow fields typically exist. In particular, spatial distributions of crystallinity, fraction of {gamma}-crystal (f{gamma}) with respect to {alpha}-crystal, and lamella-branched shish-kebab structure in the shaped samples were characterized by synchrotron two-dimensional (2D) wide-angle X-ray diffraction (WAXD) and small-angle X-ray scattering (SAXS) techniques. The results showed that the crystallinity in any given region of OSIM samples was always higher than that of CIM samples. The value of f{gamma} increased monotonously from skin to core in CIM samples, whereas the corresponding f{gamma} increased nonmonotonically in OSIM samples. The spatial distribution of {gamma}-crystal in OSIM samples can be explained by the epitaxial arrangement between {gamma}- and {alpha}-crystal in a lamella-branched shish-kebab structure. In the proposed model, the parent lamellae of {alpha}-crystal provide secondary nucleation sites for daughter lamellae of {alpha}-crystal and {gamma}-crystal, and the different content of parent lamellae results in varying amounts of {gamma}-crystal. In OSIM samples, the smallest parent-daughter ratio ([R] = 1.38) in the core region led to the lowest fraction of {gamma}-crystal (0.57), but relatively higher {gamma}-crystal content (0.69) at 600 and 1200 {micro}m depth of the samples (corresponding to [R] of 4.5 and 5.8, respectively). This is consistent with the proposed model where more parent lamellae provide more nucleation sites for crystallization, thus resulting in higher content of {gamma}-crystal. The melting behavior of CIM and OSIM samples was studied by differential scanning calorimetery (DSC). The

  7. A novel method for speciation of Pt in human serum incubated with cisplatin, oxaliplatin and carboplatin by conjoint liquid chromatography on monolithic disks with UV and ICP-MS detection.

    PubMed

    Martinčič, Anže; Cemazar, Maja; Sersa, Gregor; Kovač, Viljem; Milačič, Radmila; Ščančar, Janez

    2013-11-15

    Conjoint liquid chromatography (CLC) on monolithic convective interaction media (CIM) disks coupled on-line to UV and inductively coupled plasma mass spectrometry (ICP-MS) detectors was used for the first time in speciation analysis of Pt in human serum spiked with Pt-based chemotherapeutics. CIM Protein G and CIM DEAE disks were assembled together in a single housing forming a CLC monolithic column. Such a set-up allows rapid two-dimensional separation by affinity and ion-exchange (IE) modes to be carried out in a single chromatographic run. By applying isocratic elution with Tris-HCl-NaHCO3 buffer (pH 7.4) in the first minute, followed by gradient elution with 1 mol L(-1) NH4Cl (pH 7.4) in the next 9 min, immunoglobulins (IgG) were retained by the Protein G disk enabling subsequent separation of unbound Pt from Pt bound to transferrin (Tf) and albumin (HSA) on the CIM DEAE disk. Further elution with acetic acid (AcOH) in the next 3 min allowed separation of Pt associated with IgG. Separated Pt species were quantified by post-column isotope dilution-ICP-MS. Pt recovery on the CLC column was close to 100%. In comparison to commonly applied procedures that involve separation of protein peaks by size-exclusion chromatography (SEC) followed by IE separation of metal-based chemotherapeutic fractions bound to serum proteins, the CLC method developed is much faster and simpler. Its sensitivity (LOQs adequate for quantification of all separated Pt species, lower than 2.4 ng Pt mL(-1)), good selectivity and method repeatability (RSD±3%) enabled investigation of the kinetics of interaction of Pt-based chemotherapeutics with serum proteins and the distribution of Pt species in spiked human serum. Pt species present in spiked serum were bound preferentially to HSA. The proportion of Pt associated with IgG and Tf was lower than 13%. Cisplatin and especially oxaliplatin react rapidly with serum proteins, while carboplatin much less. The method developed may be reliably applied

  8. Atmospheric Measurements of Neutral Nucleating Clusters (Invited)

    NASA Astrophysics Data System (ADS)

    Zhao, J.; Eisele, F. L.; Smith, J. N.; Chen, M.; Jiang, J.; Kuang, C.; McMurry, P. H.

    2010-12-01

    Nanoparticles produced by nucleation can subsequently grow to cloud condensation nuclei (CCN) within one or two days and hence affect cloud formation, precipitation, and atmospheric radiation budgets. As an intermediate stage between molecules and nanoparticles, neutral molecular clusters are believed to play an important role in processes that lead to boundary layer nucleation. Therefore, knowledge of chemical composition, concentrations, thermodynamic properties, and evolution of neutral molecular clusters is essential to better elucidate the nucleation mechanism and to reduce the uncertainty in nucleation rates used in global climate models. Here we present laboratory and field measurements from a recently developed chemical ionization mass spectrometer (the Cluster-CIMS) designed to measure atmospheric neutral clusters (Zhao et al., 2010). The sensitivity of the Cluster-CIMS was significantly improved by using a unique conical octopole device in the first vacuum stage for transmitting and focusing ions, which was further confirmed by ion trajectory simulations using SIMION. The ion cluster formation in the atmospheric-pressure inlet was controlled by two processes: neutral ionization and ion-induced clustering (IIC), which can be differentiated from the time independency of the intensity ratio between the cluster and monomer ions. Two methods were employed to separate neutral clusters from the ion-induced clustering. The concentrations and distribution of the neutral nucleating clusters containing up to 4 H2SO4 are estimated from the above methods at three measurement sites in the US (NCAR foothill laboratory, Manitou Forest Observatory, and Atlanta). Typically, the molecular cluster concentrations are well correlated with the concentrations of nanoparticles measured simultaneously during the nucleation event periods. The Cluster-CIMS was employed to measure clusters containing both sulfuric acid and amines in summer 2010 at NCAR foothill laboratory

  9. The solvent-free thermal dehydration of tetritols on zeolites.

    PubMed

    Kurszewska, M; Skorupa, E; Kasprzykowska, R; Sowiński, P; Wiśniewski, A

    2000-06-30

    A new alditol dehydration method at high temperatures, in the presence of molecular sieves without solvent in an argon atmosphere, is described. Investigations on tetritols have been carried out. Products arising after the intramolecular and intermolecular elimination of water, with retention or inversion of the configuration of asymmetric carbon atoms, were observed. Complete analytical separation of reaction products was achieved by means of GLC. The chemical structures of the compounds obtained were assigned using co-injection with standards, GLC-CIMS and GLC-EIMS analyses. Two intermolecular dehydration products of tetritols were isolated by HPLC and identified by 1H and 13C NMR spectroscopy. PMID:10890272

  10. The application of finance and accounting theory to the valuation of new energy and efficiency options

    SciTech Connect

    Awerbuch, S.

    1995-12-31

    New, renewable energy and energy efficiency technologies are often passive and capital intensive-attributes they share with computer-integrated-manufacturing (CIM), robotics, computer-aided-design (CAD) and similar manufacturing process technologies. The experience in manufacturing over the last two decades indicates that traditional accounting-based procedures for valuing such new technologies significantly understate their benefits. This paper highlights recent research which extends project valuation principles and illustrates how reliance on the engineering oriented levelized energy cost distorst benefit/cost streams.

  11. Spectroscopic studies of alumina-supported nickel catalysts precursors. Part I. Catalysts prepared from acidic solutions

    NASA Astrophysics Data System (ADS)

    Pasieczna-Patkowska, S.; Ryczkowski, J.

    2007-04-01

    Nickel alumina-supported catalysts were prepared from acidic solutions of nickel nitrate by the CIM and DIM methods (classical and double impregnation, respectively). The catalysts exhibited different nickel species due to the existence of various metal-support interaction strengths. As a consequence, the reducibility and other surface properties changed as a function of the preparation method. The aim of this work was to study the interaction between the metal precursor and the alumina surface by means of FT-IR (Fourier transform infrared) and FT-IR/PAS (FT-IR photoacoustic spectroscopy).

  12. ALS - The cost cutter

    NASA Astrophysics Data System (ADS)

    Colucci, Frank

    1987-10-01

    The Advanced Launch System (ALS) development program will avail itself of existing technologies in the short term in order to produce an interim 'core' vehicle that may be operational by 1993; the full, booster-incorporating system objective will then be achieved in 1998. This programmatic 'decoupling' of booster and core vehicle development efforts will separate their funding peaks. The ALS program will cut costs by colocating manufacturing and launch facilities, using Al-Li alloys in booster primary structures, and aggressively applying 'paperless' CIM. The ALS launch vehicle configuration will be primarily determined by both payload requirements and flight frequency.

  13. Amines and Ammonia Measured in the Southeastern U.S. Forest during the 2013 SOAS Field Campaign

    NASA Astrophysics Data System (ADS)

    Lee, S.; You, Y.; Sierra-Hernández, M.; Baumann, K.; Fry, J.; Allen, H.; Draper, D. C.; Edgerton, E.

    2013-12-01

    Amines and ammonia play critical roles in new particle formation, via acid-base reactions at the initial stage of aerosol nucleation. Nitrogen base compounds are important for SOA formation, via formation of salts and condensation of amine photo-oxidation products; they also contribute to the formation of brown organic aerosols. Amines and ammonia can change the acidity and physical state of aerosols to further affect SOA yields. During the Southern Oxidant and Aerosol Study (SOAS) campaign in Centerville, Alabama from June 1 to July 15, 2013, amines and ammonia were simultaneously measured with a chemical ionization mass spectrometer (CIMS) by Kent State University [Yu and Lee, 2012: Environ. Chem. 9, 190-201]. The sensitivity of the CIMS was in the range of 5-10 Hz ion signals for 1 pptv of a base compound, which ultimately allows for the fast-time response detection (less than 1 minute) of ammonia and amines at the pptv level. Additionally, ammonia was also detected with another two independent methods, MARGA (Measuring AeRosols and Gases) by Reed College, and chemiluminescence by ARA. Ammonia concentrations measured by CIMS, MARGA and chemiluminescence were at the ppbv and sub-ppbv level. Over the 6 weeks of the SOAS field study, these three ammonia instruments consistently showed very similar time variations and agreed reasonably well. The CIMS also detected various C1 through C6 amines at the pptv and tens pptv level. Trimethylamine (C3 amine) and ammonia showed similar diurnal trends, temperature and wind direction dependences for most days, implying common natural emission sources of these two base compounds at this forest site. On the other hand, methylamine (C1) and dimethylamine (C2) were much lower than trimethylamine and they did not show clear diurnal variations and temperature dependences. During the brief episode of local biomass burning, concentrations of C3 through C6 amines and ammonia increased rapidly, while methylamine and dimethylamine were

  14. State-of-the-art multichip modules for avionics

    NASA Astrophysics Data System (ADS)

    Hagge, John K.

    1991-04-01

    The emerging multichip packaging technology offers significant advantages in miniaturization faster electrical performance efficient thermal performance lower cost and significantly improved reliability. Newly available materials and processes have stimulated multichip applications ranging from low-cost consumer electronics and automotive modules to advanced aerospace and supercomputer applications. Avionics multichip modules share the same systems integration issues as other applications: optimum partitioning seamless CAD/CIM tools testability and repairability strategies cost-effective manufacturing availability of vendor support technologies and reliable packaging for long life in environmental stresses. This paper discusses state-of-the-art avionics multichip modules industry developments required to enable wider utilization and evolutionary extensions into next generation technologies.

  15. Removal of recalcitrant pollutants from wastewater

    NASA Astrophysics Data System (ADS)

    Pasieczna-Patkowska, S.; Czech, B.; Ryczkowski, J.; Patkowski, J.

    2010-06-01

    Triton X-100 was oxidized in aqueous solutions with the presence of O 2 using photocatalysis and H 2O 2 addition alone or coupled. New supported TiO 2/Al 2O 3 catalysts modified with vanadium and cobalt were used. Catalysts were prepared using the classical impregnation method (CIM) and the double impregnation method (DIM). The effect of the physico-chemical properties of the catalysts on its activity were studied. The research on the interactions between the metal precursor and the titania-alumina surface by means of FT-IR/PAS (Fourier transform infrared photoacoustic spectroscopy) were also conducted.

  16. Novel mineral contrast agent for magnetic resonance studies of bone implants grown on a chick chorioallantoic membrane.

    PubMed

    Chesnick, Ingrid E; Fowler, Carol B; Mason, Jeffrey T; Potter, Kimberlee

    2011-11-01

    Magnetic resonance imaging (MRI) studies of tissue engineered constructs prior to implantation clearly demonstrate the utility of the MRI technique for studying the bone formation process. To test the utility of our MRI protocols for explant studies, we present a novel test platform in which osteoblast-seeded scaffolds were implanted on the chorioallantoic membrane of a chick embryo. Scaffolds from the following experimental groups were examined by high-resolution MRI: (a) cell-seeded implanted scaffolds (CIM), (b) unseeded implanted scaffolds (UCIM), (c) cell-seeded scaffolds in static culture (CIV) and (d) unseeded scaffolds in static culture (UCIV). The reduction in water proton transverse relaxation times and the concomitant increase in water proton magnetization transfer ratios for CIM and CIV scaffolds, compared to UCIV scaffolds, were consistent with the formation of a bone-like tissue within the polymer scaffold, which was confirmed by immunohistochemistry and fluorescence microscopy. However, the presence of angiogenic vessels and fibrotic adhesions around UCIM scaffolds can confound MRI findings of bone deposition. Consequently, to improve the specificity of the MRI technique for detecting mineralized deposits within explanted tissue engineered bone constructs, we introduce a novel contrast agent that uses alendronate to target a Food and Drug Administration-approved MRI contrast agent (Gd-DOTA) to bone mineral. Our contrast agent termed GdALN was used to uniquely identify mineralized deposits in representative samples from our four experimental groups. After GdALN treatment, both CIM and CIV scaffolds, containing mineralized deposits, showed marked signal enhancement on longitudinal relaxation time-weighted (T1W) images compared to UCIV scaffolds. Relative to UCIV scaffolds, some enhancement was observed in T1W images of GdALN-treated UCIM scaffolds, subjacent to the dark adhesions at the scaffold surface, possibly from dystrophic mineral formed in the

  17. Development of PC motion control system based on LAN environment

    NASA Astrophysics Data System (ADS)

    You, Bo; Wang, Pengfei; Liu, Yanwu

    2001-10-01

    The system combines the motion control technology and LAN advantages. Usually there are one center computer and several or more subordinate computers, which form star-topotaxy mode. The data transmission strategy makes use of mature database management system SQLSERVER, which can automatically deal with data communication, so the programmer can avoid complicated communication programming. The system construction is simple and mainly oriented to small-middle scale enterprise and CIMS project. By practice, the system has been developed and used for industry production and control successfully.

  18. Part model of rotational components based on binary tree approach of form feature for CAD/CAPP/CAM

    NASA Astrophysics Data System (ADS)

    Cai, Ligang; Yin, Jun; Ma, Weidong; Li, Peigen; Duan, Zhengcheng

    1995-08-01

    From the application point of view of CIM or CAD/CAPP/CAM, there should be a unified part model through which the different application system can share the part information. Using feature as the basic information unit, form feature and its binary tree as the skeleton, a new practical part model regarding the rotational components is presented in this paper. The data structure of the model is discussed in detail. An application example of the model is shown in this article. The model has been found to be flexible and effective in part creation, representation, automatic process planning, and CAM.

  19. Missing SO2 oxidant in the coastal atmosphere? - Evidence from high resolution measurements of OH and atmospheric sulfur compounds

    NASA Astrophysics Data System (ADS)

    Berresheim, H.; Adam, M.; Monahan, C.; O'Dowd, C.; Plane, J. M. C.; Bohn, B.; Rohrer, F.

    2014-01-01

    Diurnal and seasonal variations of gaseous sulfuric acid (H2SO4) and methane sulfonic acid (MSA) were measured in N.E. Atlantic air at the Mace Head atmospheric research station during the years 2010 and 2011. The measurements utilized selected ion/chemical ionization mass spectrometry (SI/CIMS) with a detection limit for both compounds of 4.3 × 10 4 cm-3 at 5 min signal integration. The H2SO4 and MSA gas-phase concentrations were analysed in conjunction with the condensational sink for both compounds derived from 3 nm-10 μm (diameter) aerosol size distributions. Accommodation coefficients of 1.0 for H2SO4 and 0.12 for MSA were assumed leading to estimated atmospheric lifetimes of the order of 7 min and 25 min, respectively. With the SI/CIMS instrument in OH measurement mode alternating between OH signal and background (non-OH) signal evidence was obtained for the presence of one or more unknown oxidants of SO2 in addition to OH. Depending on the nature of the oxidant(s) their ambient concentration may be enhanced in the CIMS inlet system by additional production. The apparent unknown SO2 oxidant was additionally confirmed by direct measurements of SO2 in conjunction with calculated H2SO4 concentrations. The calculated concentrations were consistently lower than the measured concentrations by a factor 4.8 ± 3.4 when considering the oxidation of SO2 by OH as the only source of H2SO4. Both the OH and the background signal were also observed to increase significantly during daytime aerosol nucleation events, independent of the ozone photolysis frequency, J(O1D), and were followed by peaks in both H2SO4 and MSA concentrations. This suggests a strong relation between the unknown oxidant(s), OH chemistry, and the atmospheric photo-oxidation of biogenic iodine compounds. As to the identity of the oxidant(s), we have been able to exclude ClO, BrO, IO, and OIO as possible candidates based on ab initio calculations. Stabilized Criegee intermediates (sCI) produced from

  20. Development of a High-Resolution H3O+ Chemical Ionization Mass Spectrometer for Gas-phase Hydrocarbons and its Application During the 2015 SONGNEX Aircraft Campaign

    NASA Astrophysics Data System (ADS)

    Koss, A.; Yuan, B.; De Gouw, J. A.; Warneke, C.; Stark, H.

    2015-12-01

    In-situ time-of-flight chemical ionization mass spectrometers (ToF-CIMS) using H3O+ reagent ion chemistry (PTR-MS) are a relatively new technique in detection of gas-phase hydrocarbons, and recent improvements in instrument sensitivity, mass resolution, and ease of field deployment have expanded their use in atmospheric chemistry. The comparatively low-energy H3O+ ionization technique is ideal for measuring complex mixtures of hydrocarbons, and, compared to conventional quadrupole PTRMS, the newest generation of ToF-CIMS measure many more species simultaneously and with a sensitivity that is as high as a quadrupole PTR-MS. We describe here the development of a commercially available ToF CIMS into an H3O+CIMS suitable for deployment on aircraft, and its application during an aircraft campaign studying emissions from oil and natural gas extraction industry. We provide an overview of instrument development and specifications, including design, characterization, and field operation. We then discuss data processing and interpretation. First, we investigate determination of intensities of poorly resolved peaks. The mass resolution of the present instrument (m/Δm ~4500) enables separate analysis of many isobaric peaks, but peaks are also frequently not fully resolved. Using results from laboratory tests, we quantify how the accuracy can be limited by the overlap in neighboring peaks, and compare to theoretical predictions from literature. We then briefly describe our method for quality assurance of reported compounds, and correction for background and humidity effects. Finally, we present preliminary results from the first field deployment of this instrument during the Spring 2015 SONGNEX aircraft campaign. This campaign sampled emissions from oil and natural gas extraction regions and associated infrastructure in the Western and Central United States. We will highlight results that illustrate (1) new scientific capability from improved mass resolution, which

  1. Exact solutions of three-dimensional black holes: Einstein gravity versus F(R) gravity

    NASA Astrophysics Data System (ADS)

    Hendi, S. H.; Eslam Panah, B.; Saffari, R.

    2014-10-01

    In this paper, we consider Einstein gravity in the presence of a class of nonlinear electrodynamics, called power Maxwell invariant (PMI). We take into account (2 + 1)-dimensional spacetime in Einstein-PMI gravity and obtain its black hole solutions. Then, we regard pure F(R) gravity as well as F(R)-conformally invariant Maxwell (CIM) theory to obtain exact solutions of the field equations with black hole interpretation. Finally, we investigate the conserved and thermodynamic quantities and discuss about the first law of thermodynamics for the mentioned gravitational models.

  2. Corrigendum to "High-ohmic resistors fabricated by PureB layer for silicon drift detectors applications" [Solid State Electron. 105 (2015) 6-11

    NASA Astrophysics Data System (ADS)

    Golshani, Negin; Derakhshandeh, Jaber; Beenakker, C. I. M.; Ishihara, R.

    2016-05-01

    In a journal publication "High-ohmic resistors fabricated by PureB layer for silicon drift detectors applications" by Negin Golshani; Jaber Derakhshandeh; C.I.M. Beenakker; R. Ishihara; published in Solid State Electronics, vol. 105, pp. 6-11, in 2015, an error occurred in the references by omitting the paper published by N. Golshani, et al., in the Proceedings of European Solid-State Device Research Conference (ESSDERC) in 2013 [1]. We apologize for any inconvenience caused. We also apologize for not properly acknowledging the contributions of Drs. L.K. Nanver, V. Mohammadi, and S. Ramesh to the first part of this research.

  3. Three Giants in the Cradle of Reproductive Medicine; Reproduction Theories of the Seventeenth Century as Discerned by Pregnancy Portraiture in the Oeuvre of Jan Vermeer

    PubMed Central

    Haimov-Kochman, Ronit; Spitz, Irving M.

    2016-01-01

    Portraits of pregnant women are rare in Catholic Renaissance art. In seventeenth-century Holland, the Catholic rule of Spain had been thrown off and a Protestant Calvinistic republic emerged, freeing Dutch artists to choose an unorthodox subject matter for their paintings. The Golden Age of Holland was characterized by extreme wealth, originating from overseas trade, which fostered a marked interest in philosophy, science, medicine, as well as art. Despite this, portraiture of pregnancy remained uncommon. An exception to this rule was Jan Vermeer of Delft, who lived during the zenith of this era. Jan Vermeer painted fewer than 40 pictures, fathered 15 children, and died bankrupt and little appreciated at the age of 43. Vermeer confined himself almost entirely to images of women in various domestic situations, including three figures of pregnant women. In this framework, pregnancy could be viewed as an icon for fidelity and conformism to social expectations. In this paper we investigate the roots of this unusual icon in Vermeer’s oeuvre, and suggest that the use of pregnancy in his paintings could have been inspired by his Delft-resident contemporaries Antony van Leeuwenhoek and Reinier de Graaf, fathers of well-known and opposing theories of reproduction. These eminent scientists and Vermeer’s pregnant wife, who frequently served as his model, might have made pregnancy less mysterious and more realistic to the painter. PMID:27101220

  4. The potential of archive functionality in operational forecasting

    NASA Astrophysics Data System (ADS)

    Davids, Femke; Verkade, Jan

    2015-04-01

    One aspect of making good predictions is a good forecasting system (data and models) and another essential part of making good predictions is a well-trained forecaster. Good data management practices and training protocols are important in reaching these goals. Among other reasons, this led to the development of a new archive functionality within the forecasting software Delft-FEWS. This open archive is based on standards and supports different data access protocols. Options have been developed to archive specific hazard events either via automatic protocols or manually. Data and events can be accessed from within Delft-FEWS but also other software programs. The data is converted to NetCDF and metadata is added. These archived events can be retrieved in the live operational forecasting system to compare to a current situation to aid interpretation and decision making or used stand alone for training purposes. In this presentation we would like to demonstrate an application of this new functionality and the opportunities that it provides in a Dutch fluvial forecasting system.

  5. Operational Management System for Regulated Water Systems

    NASA Astrophysics Data System (ADS)

    van Loenen, A.; van Dijk, M.; van Verseveld, W.; Berger, H.

    2012-04-01

    Most of the Dutch large rivers, canals and lakes are controlled by the Dutch water authorities. The main reasons concern safety, navigation and fresh water supply. Historically the separate water bodies have been controlled locally. For optimizating management of these water systems an integrated approach was required. Presented is a platform which integrates data from all control objects for monitoring and control purposes. The Operational Management System for Regulated Water Systems (IWP) is an implementation of Delft-FEWS which supports operational control of water systems and actively gives advice. One of the main characteristics of IWP is that is real-time collects, transforms and presents different types of data, which all add to the operational water management. Next to that, hydrodynamic models and intelligent decision support tools are added to support the water managers during their daily control activities. An important advantage of IWP is that it uses the Delft-FEWS framework, therefore processes like central data collection, transformations, data processing and presentation are simply configured. At all control locations the same information is readily available. The operational water management itself gains from this information, but it can also contribute to cost efficiency (no unnecessary pumping), better use of available storage and advise during (water polution) calamities.

  6. Painting models

    NASA Astrophysics Data System (ADS)

    Baart, F.; Donchyts, G.; van Dam, A.; Plieger, M.

    2015-12-01

    The emergence of interactive art has blurred the line between electronic, computer graphics and art. Here we apply this art form to numerical models. Here we show how the transformation of a numerical model into an interactive painting can both provide insights and solve real world problems. The cases that are used as an example include forensic reconstructions, dredging optimization, barrier design. The system can be fed using any source of time varying vector fields, such as hydrodynamic models. The cases used here, the Indian Ocean (HYCOM), the Wadden Sea (Delft3D Curvilinear), San Francisco Bay (3Di subgrid and Delft3D Flexible Mesh), show that the method used is suitable for different time and spatial scales. High resolution numerical models become interactive paintings by exchanging their velocity fields with a high resolution (>=1M cells) image based flow visualization that runs in a html5 compatible web browser. The image based flow visualization combines three images into a new image: the current image, a drawing, and a uv + mask field. The advection scheme that computes the resultant image is executed in the graphics card using WebGL, allowing for 1M grid cells at 60Hz performance on mediocre graphic cards. The software is provided as open source software. By using different sources for a drawing one can gain insight into several aspects of the velocity fields. These aspects include not only the commonly represented magnitude and direction, but also divergence, topology and turbulence .

  7. Hydrologic Forecasting at the US National Weather Service in the 21st Century: Transition from the NWS River Forecast System (NWSRFS) to the Community Hydrologic Prediction System (CHPS)

    NASA Astrophysics Data System (ADS)

    Restrepo, Pedro; Roe, Jon; Dietz, Christine; Werner, Micha; Gijsbers, Peter; Hartman, Robert; Opitz, Harold; Olsen, Billy; Halquist, John; Shedd, Robert

    2010-05-01

    The US National Weather Service developed the River Forecast System (NWSRFS) since the 1970s as the platform for performing hydrologic forecasts. The system, originally developed for the computers of that era, was optimized for speed of execution and compact and fast data storage and retrieval. However, with modern computers those features became less of a driver, and, instead, the ability to maintain and transition of new developments in data and modeling research into operations have become the top system priorities for hydrologic forecasting software applications. To address those two new priorities, and to allow the hydrologic research community at large to be able to contribute models and forecasting techniques, the National Weather Service proposed the development of the Community Hydrologic Prediction System (CHPS). CHPS must be sufficiently flexible not only to ensure current operational models and data remain available, but also to integrate readily modeling approaches and data from the wider community of practitioners and scientists involved in hydro-meteorological forecasting. Portability considerations require the computational infrastructure to be programmed in a language such as Java, and data formats conform to open standards such as XML. After examining a number of potential candidates, the NWS settled on the Delft Flood Early Warning System (Delft FEWS) from Deltares as the basis for CHPS, since it shares the basic design characteristics, the underlying community philosophy and was being successfully used in operations in several countries. This paper describes the characteristics of CHPS and the transition path to make it operational and available to the community.

  8. Low-frequency conductance fluctuations in Si:P and Ge:P δ-layers

    NASA Astrophysics Data System (ADS)

    Shamim, Saquib; Mahapatra, Suddhasatta; Scappucci, Giordano; Klesse, W. M.; Simmons, Michelle Y.; Ghosh, Arindam

    Delta doped Si:P and Ge:P devices offer a formidable platform for application towards quantum computation. The fabrication of single donor devices by STM-lithography takes us forward to address the solid state quantum bits. The atomic scale control however makes the devices extremely sensitive to fluctuations and disorder which affect their long term stability. Hence, a study of low frequency 1/f noise for these devices is desirable. We measure 1/f noise in Si:P and Ge:P δ-layers of varying doping density. Fluctuations in conductivity arise due to fluctuations in mobility and the Hooge parameter scales inversely with mobility as 1 /μ3 for all devices. For highly doped Ge:P δ-layer, the noise magnitude in a perpendicular magnetic field (B⊥) reduces by factors of two at the phase breaking breaking field and the Zeeman field indicating universal conductance fluctuations (UCF). The phase breaking length lϕUCF extracted by fitting the B⊥ dependence of noise to the crossover function matches well with lϕWL extracted from weak localization (WL) fits to magnetoconductivity indicating that both UCF and WL are governed by same scattering rates. Present Address: QuTech, Delft University of Technology, P.O. Box 5046, 2600 GA Delft, The Netherlands.

  9. A loophole-free Bell test with spin quits in diamond

    NASA Astrophysics Data System (ADS)

    Dreau, Anais; Hensen, Bas; Bernien, Hannes; Reiserer, Andreas; Ruitenberg, Just; Blok, Machiel; Markham, Matthew; Twitchen, Daniel; Wehner, Stephanie; Hanson, Ronald; Element 6 Team

    2015-03-01

    One of the most intriguing phenomena in quantum physics is the entanglement of spatially separated objects. The benchmark to prove the fundamental non-locality of remote entanglement is provided by the famous Bell's theorem. Nevertheless, all its experimental implementations to date open the door to loopholes that restrict the practical validity of this theorem., we present our latest experimental results towards the realization of a Bell test, aimed to close the detection loophole and address the locality and free-will loopholes in a single experiment. Our qubits consist of the electronic spin associated with single NV center defects in diamond. An efficient remote entanglement protocol allows us to generate entangled qubit pairs between two labs separated by 1.3 km on the TU Delft campus. The moderate time (<3.5 us) required for high fidelity (>99%) qubit rotations and efficient (>97%) readout make our setup a good candidate to allow the experimental violation of Bell's inequalities between two space-like separated entangled spins without relying on the fair sampling assumption. FOM, NWO, ERC, Kavli Institute of Nanoscience Delft, QUTech, STW.

  10. A New Sauropod Dinosaur from the Middle Jurassic of the United Kingdom

    PubMed Central

    Manning, Phillip L.

    2015-01-01

    A new record of a sauropodomorph dinosaur is here described from the Middle Jurassic (Aalenian) Saltwick Formation of Whitby (Yorkshire), UK. A single caudal vertebra represents an early sauropodomorph and signifies the earliest recognised eusauropod dinosaur from the United Kingdom. The absence of pleurocoels and a narrow, dorsoventrally deep, but craniocaudally short centrum, suggests a primitive sauropodomorph. Distinct spinopostzygopophyseal laminae rise from the lateral margins of the postzygapophyses and pass caudally along what remains of the neural spine, a character unique to a subgroup of sauropods that includes Barapasaurus, Omeisaurus and other neosauropods and eusauropods. The lack of phylogenetically robust characters in sauropod caudal vertebrae usually makes it difficult to establish affinities, but the absence of mild procoely excludes this specimen from both Diplodocoidea and Lithostrotia. The vertebra cannot be further distinguished from those of a wide range of basal sauropods, cetiosaurids and basal macronarians. However, this plesiomorphic vertebra still signifies the earliest stratigraphic occurrence for a British sauropod dinosaur. PMID:26030865

  11. Myelin imaging with C-11 labeled diphenylmethanol and positron emission tomography

    SciTech Connect

    Herscovitch, P.; Dischino, D.D.; Kilbourn, M.R.; Welch, M.J.; Raichle, M.E.

    1985-05-01

    The authors have recently studied several C-11-labeled radiopharmaceuticals for their suitability as myelin imaging agents with positron emission tomography (PET). C-11 diphenylmethanol (DPM) was selected on the basis of its in vivo metabolic stability and high extraction and lipophilicity. PET studies were performed in three normal subjects and in one patient with multiple sclerosis (MS). Myelin distribution was imaged following the bolus intravenous administration of 25-30 mCi of C-11 DPM. Sequential scans were obtained after radiotracer administration to measure the DPM distribution as a function of time. In addition, regional cerebral blood flow was measured after the bolus intravenous injection of 0-15 water. A tomographic slice through the centrum semiovale was used to obtain regional data for gray matter (GM) and white matter (WM).

  12. Quantitative characterization of metastatic disease in the spine. Part I. Semiautomated segmentation using atlas-based deformable registration and the level set method

    SciTech Connect

    Hardisty, M.; Gordon, L.; Agarwal, P.; Skrinskas, T.; Whyne, C.

    2007-08-15

    Quantitative assessment of metastatic disease in bone is often considered immeasurable and, as such, patients with skeletal metastases are often excluded from clinical trials. In order to effectively quantify the impact of metastatic tumor involvement in the spine, accurate segmentation of the vertebra is required. Manual segmentation can be accurate but involves extensive and time-consuming user interaction. Potential solutions to automating segmentation of metastatically involved vertebrae are demons deformable image registration and level set methods. The purpose of this study was to develop a semiautomated method to accurately segment tumor-bearing vertebrae using the aforementioned techniques. By maintaining morphology of an atlas, the demons-level set composite algorithm was able to accurately differentiate between trans-cortical tumors and surrounding soft tissue of identical intensity. The algorithm successfully segmented both the vertebral body and trabecular centrum of tumor-involved and healthy vertebrae. This work validates our approach as equivalent in accuracy to an experienced user.

  13. Physical evidence of predatory behavior in Tyrannosaurus rex

    NASA Astrophysics Data System (ADS)

    DePalma, Robert A., II; Burnham, David A.; Martin, Larry D.; Rothschild, Bruce M.; Larson, Peter L.

    2013-07-01

    Feeding strategies of the large theropod, Tyrannosaurus rex, either as a predator or a scavenger, have been a topic of debate previously compromised by lack of definitive physical evidence. Tooth drag and bone puncture marks have been documented on suggested prey items, but are often difficult to attribute to a specific theropod. Further, postmortem damage cannot be distinguished from intravital occurrences, unless evidence of healing is present. Here we report definitive evidence of predation by T. rex: a tooth crown embedded in a hadrosaurid caudal centrum, surrounded by healed bone growth. This indicates that the prey escaped and lived for some time after the injury, providing direct evidence of predatory behavior by T. rex. The two traumatically fused hadrosaur vertebrae partially enclosing a T. rex tooth were discovered in the Hell Creek Formation of South Dakota.

  14. Physical evidence of predatory behavior in Tyrannosaurus rex.

    PubMed

    DePalma, Robert A; Burnham, David A; Martin, Larry D; Rothschild, Bruce M; Larson, Peter L

    2013-07-30

    Feeding strategies of the large theropod, Tyrannosaurus rex, either as a predator or a scavenger, have been a topic of debate previously compromised by lack of definitive physical evidence. Tooth drag and bone puncture marks have been documented on suggested prey items, but are often difficult to attribute to a specific theropod. Further, postmortem damage cannot be distinguished from intravital occurrences, unless evidence of healing is present. Here we report definitive evidence of predation by T. rex: a tooth crown embedded in a hadrosaurid caudal centrum, surrounded by healed bone growth. This indicates that the prey escaped and lived for some time after the injury, providing direct evidence of predatory behavior by T. rex. The two traumatically fused hadrosaur vertebrae partially enclosing a T. rex tooth were discovered in the Hell Creek Formation of South Dakota. PMID:23858435

  15. First sauropod (Dinosauria: Saurischia) remains from the Guichón Formation, Late Cretaceous of Uruguay

    NASA Astrophysics Data System (ADS)

    Soto, Matías; Perea, Daniel; Cambiaso, Andrea

    2012-02-01

    We report the first sauropod remains recorded in the Guichón Formation, western Uruguay. The materials belong to a middle-sized sauropod represented by more than one individual, and among other remains include more than fifty caudal centra. Close to the bones, several eggshell fragments resembling Sphaerovum erbeniMones, 1980 were found. We discuss the biostratigraphic implications of these findings, which for the first time allow us to confidently refer the Guichón Formation to the Late Cretaceous. The combination of several synapomorphies such as a biconvex first caudal centrum, strongly procoelous middle and distal caudal centra, and a pyramidal astragalus suggests that the sauropod remains belong to a derived lithostrotian, probably related to Pellegrinisaurus powelli, Baurutitan britoi and Alamosaurus sanjuanensis. A few isolated teeth (now lost) referred by Frederich von Huene in 1934 to ornithomimid theropods and ornithischians are herein reinterpreted as belonging to indeterminate theropods and basal iguanodontians.

  16. Physical evidence of predatory behavior in Tyrannosaurus rex

    PubMed Central

    DePalma, Robert A.; Burnham, David A.; Martin, Larry D.; Rothschild, Bruce M.; Larson, Peter L.

    2013-01-01

    Feeding strategies of the large theropod, Tyrannosaurus rex, either as a predator or a scavenger, have been a topic of debate previously compromised by lack of definitive physical evidence. Tooth drag and bone puncture marks have been documented on suggested prey items, but are often difficult to attribute to a specific theropod. Further, postmortem damage cannot be distinguished from intravital occurrences, unless evidence of healing is present. Here we report definitive evidence of predation by T. rex: a tooth crown embedded in a hadrosaurid caudal centrum, surrounded by healed bone growth. This indicates that the prey escaped and lived for some time after the injury, providing direct evidence of predatory behavior by T. rex. The two traumatically fused hadrosaur vertebrae partially enclosing a T. rex tooth were discovered in the Hell Creek Formation of South Dakota. PMID:23858435

  17. A hidden pygmy devil from the Philippines: Arulenus miae sp. nov.-a new species serendipitously discovered in an amateur Facebook post
    (Tetrigidae: Discotettiginae).

    PubMed

    Skejo, Josip; Caballero, Joy Honezza S

    2016-01-01

    Arulenus miae Skejo & Caballero sp. nov. is described from Buknidon and Davao, Mindanao, the Philippines. The species was serendipitously found in an amateur photo posted in Orthoptera Facebook group by Leif Gabrielsen. Holotype and paratype are deposited in Nederlands Centrum voor Biodiversiteit in Leiden, the Netherlands. Detailed comparison with Arulenus validispinus Stål, 1877 is given. A new diagnosis of the genus and A. validispinus is given. The paper is part of the revision of the subfamily Discotettiginae. This study provides a good example of how social networks can be used as a modern tool of discovering biodiversity if the regulations of the International Code of the Zoological Nomenclature are followed. A brief insight into habitat and ecology of this rainforest and mountainous species is presented. PMID:27395882

  18. Two new dwarfgobies from the Indian and Western Pacific Oceans (Teleostei: Gobiidae: Eviota).

    PubMed

    Greenfield, David W; Jewett, Susan L

    2016-01-01

    Two new species of dwarfgobies are described, Eviota asymbasia from the Sulu Sea, Philippine Islands, south to Java and west to Damar, and E. bipunctata occurring from the Indian Ocean eastward into the western Pacific Ocean. Eviota asymbasia lacks the IT pore of the cephalic sensory-pore system and usually also the POP, has a dorsal/anal-fin formula of 8/8, has some pectoral-fin rays branched and usually 15 rays, two spots on the pectoral-fin base, no dark spot over the preural centrum, first dorsal fin may be filamentous, six ventral postanal spots, and the male genital papilla is not fimbriate. Eviota bipunctata belongs to the group with cephalic sensory-pore system pattern 2 (lacking only the IT pore), some pectoral-fin rays branched, pectoral-fin base with 1 or 2 prominent dark spots, dorsal/anal-fin formula usually 8/8, and no occipital spots. PMID:27395247

  19. A problematic early tetrapod from the Mississippian of Nevada

    USGS Publications Warehouse

    Thomson, K.S.; Shubin, N.S.; Poole, F.G.

    1998-01-01

    We report here the discovery of a new taxon of Paleozoic tetrapod from the Late Mississippian of Nevada (330-340 Ma). It has a unique vertebral column with principal centra having vertical anterior and posterior faces, ventrally incomplete accessory centra located antero-dorsally in each centrum, and enlarged presacral/sacral vertebrae. The head and pectoral girdle were not preserved but the large femur, robust pelvic girdle and enlarged sacral vertebrae possibly indicate a terrestrial mode of life. This new form significantly extends the western geographic range of known Mississippian tetrapods. It presents a mosaic of primitive and derived features, indicating that continued revision of traditional accounts of vertebral homology and the early diversifications of Paleozoic tetrapods will be necessary.

  20. Cerebral amyloid angiopathy severity is linked to dilation of juxtacortical perivascular spaces.

    PubMed

    van Veluw, Susanne J; Biessels, Geert Jan; Bouvy, Willem H; Spliet, Wim Gm; Zwanenburg, Jaco Jm; Luijten, Peter R; Macklin, Eric A; Rozemuller, Annemieke Jm; Gurol, M Edip; Greenberg, Steven M; Viswanathan, Anand; Martinez-Ramirez, Sergi

    2016-03-01

    Perivascular spaces are an emerging marker of small vessel disease. Perivascular spaces in the centrum semiovale have been associated with cerebral amyloid angiopathy. However, a direct topographical relationship between dilated perivascular spaces and cerebral amyloid angiopathy severity has not been established. We examined this association using post-mortem magnetic resonance imaging in five cases with evidence of cerebral amyloid angiopathy pathology. Juxtacortical perivascular spaces dilation was evaluated on T2 images and related to cerebral amyloid angiopathy severity in overlying cortical areas on 34 tissue sections stained for Amyloid β. Degree of perivascular spaces dilation was significantly associated with cerebral amyloid angiopathy severity (odds ratio = 3.3, 95% confidence interval 1.3-7.9, p = 0.011). Thus, dilated juxtacortical perivascular spaces are a promising neuroimaging marker of cerebral amyloid angiopathy severity. PMID:26661250

  1. Noninvasive Oxygen Monitoring in Three-Dimensional Tissue Cultures Under Static and Dynamic Culture Conditions

    PubMed Central

    Weyand, Birgit; Nöhre, Mariel; Schmälzlin, Elmar; Stolz, Marvin; Israelowitz, Meir; Gille, Christoph; von Schroeder, Herb P.; Reimers, Kerstin; Vogt, Peter M.

    2015-01-01

    Abstract We present a new method for noninvasive real-time oxygen measurement inside three-dimensional tissue-engineered cell constructs in static and dynamic culture settings in a laminar flow bioreactor. The OPAL system (optical oxygen measurement system) determines the oxygen-dependent phosphorescence lifetime of spherical microprobes and uses a two-frequency phase-modulation technique, which fades out the interference of background fluorescence from the cell carrier and culture medium. Higher cell densities in the centrum of the scaffolds correlated with lower values of oxygen concentration obtained with the OPAL system. When scaffolds were placed in the bioreactor, higher oxygen values were measured compared to statically cultured scaffolds in a Petri dish, which were significantly different at day 1–3 of culture. This technique allows the use of signal-weak microprobes in biological environments and monitors the culture process inside a bioreactor. PMID:26309802

  2. Endovascular management of six simultaneous intracranial dural arteriovenous fistulas in a single patient

    PubMed Central

    Gist, Taylor L; Rangel-Castilla, Leonardo; Krishna, Chandan; Roman, Gustavo C; Cech, David A; Diaz, Orlando

    2013-01-01

    A 64-year-old man with a history of traumatic brain injury 4 years previously presented with progressive cognitive decline and gait abnormality. MRI revealed diffusion restriction in the bilateral centrum semiovale and multiple serpiginous flow voids. Cerebral angiogram revealed a total of six intracranial dural arteriovenous fistulas with separate fistulas of the right and left sphenoid bones, left clival plexus, right transverse sinus, right sigmoid sinus, and superior sagittal sinus. A diffuse pseudophlebitic pattern of venous drainage indicating severe venous hypertension was also observed. The patient underwent a series of endovascular treatments over the next 10 months to achieve resolution of all arteriovenous shunting. Repeat MRI showed resolution of the diffusion restriction and marked reduction in T2 vascular flow voids. The patient's clinical status improved significantly over the course of treatment, paralleling the improvement in venous hypertension. PMID:23475992

  3. Building the backbone: the development and evolution of vertebral patterning.

    PubMed

    Fleming, Angeleen; Kishida, Marcia G; Kimmel, Charles B; Keynes, Roger J

    2015-05-15

    The segmented vertebral column comprises a repeat series of vertebrae, each consisting of two key components: the vertebral body (or centrum) and the vertebral arches. Despite being a defining feature of the vertebrates, much remains to be understood about vertebral development and evolution. Particular controversy surrounds whether vertebral component structures are homologous across vertebrates, how somite and vertebral patterning are connected, and the developmental origin of vertebral bone-mineralizing cells. Here, we assemble evidence from ichthyologists, palaeontologists and developmental biologists to consider these issues. Vertebral arch elements were present in early stem vertebrates, whereas centra arose later. We argue that centra are homologous among jawed vertebrates, and review evidence in teleosts that the notochord plays an instructive role in segmental patterning, alongside the somites, and contributes to mineralization. By clarifying the evolutionary relationship between centra and arches, and their varying modes of skeletal mineralization, we can better appreciate the detailed mechanisms that regulate and diversify vertebral patterning. PMID:25968309

  4. Sensitivity studies of the new Coastal Surge and Inundation Prediction System

    NASA Astrophysics Data System (ADS)

    Condon, A. J.; Veeramony, J.

    2012-12-01

    This paper details the sensitivity studies involved in the validation of a coastal storm surge and inundation prediction system for operational use by the United States Navy. The system consists of the Delft3D-FLOW model coupled with the Delft3D-WAVE model. This dynamically coupled system will replace the current operational system, PC-Tides which does not include waves or other global ocean circulation. The Delft3D modeling system uses multiple nests to capture large, basin-scale circulation as well as coastal circulation and tightly couples waves and circulation at all scales. An additional benefit in using the presented system is that the Delft Dashboard, a graphical user interface product, can be used to simplify the set-up of Delft3D features such as the grid, elevation data, boundary forcing, and nesting. In this way less man-hours and training will be needed to perform inundation forecasts. The new coupled system is used to model storm surge and inundation produced by Hurricane Ike (2008) along the Gulf of Mexico coast. Due to the time constraints in an operational forecasting environment, storm simulations must be as streamlined as possible. Many factors such as model resolution, elevation data sets, parametrization of bottom friction, frequency of coupling between hydrodynamic and wave components, and atmospheric forcing among others can influence the run times and results of the simulations. To assess the sensitivity of the modeling system to these various components a "best" simulation was first developed. The best simulation consists of reanalysis atmospheric forcing in the form of Oceanweather wind and pressure fields. Further the wind field is modified by applying a directional land-masking to account for changes in land-roughness in the coastal zone. A number of air-sea drag coefficient formulations were tested to find the best match with observed results. An analysis of sea-level trends for the region reveals a seasonal trend of elevated sea level

  5. CHPS - an NWS development to enter the interoperability era

    NASA Astrophysics Data System (ADS)

    Gijsbers, P.; Cajina, L.; Dietz, C.; Roe, J.; Welles, E.

    2009-12-01

    The NOAA National Weather Service (NWS) is the designated federal agency to provide hydrological forecast information to the wider public. Until now, this task has been conducted using the NWS River Forecast System (NWSRFS). While the NWSRFS has served the NWS’s needs for a long time, its architecture and code base limits the NWS ability to embrace and incorporate new techniques developed in the research arena. Therefore, the NWS Office of Hydrologic Development (OHD) is modernizing the software infrastructure so it can more easily accommodate advances in hydrologic science developed in the public and private community. The Community Hydrologic Prediction System (CHPS) program has been initiated for this purpose. After several studies and assessments, DelftFEWS, developed by Deltares, was selected as the future software infrastructure for CHPS. With flow forecasting applications around the world, DelftFEWS has shown its capability to deploy a wide variety of hydrological models from multiple suppliers in a forecasting context. Nowadays, nearly 40 different numerical software models in the river, coastal and water quality domain can be deployed within DelftFEWS. Model states, parameters, run-time settings and forcings, either lumped or gridded, are exchanged with models using the so-called Published Interface (PI), a standardized set of XML-files. Model adapters typically transfer this data into native formats, but may also use Application Programming Interface (API) calls to feed the data to a model. In those cases where process interaction is needed between software models, a model composition may be deployed as one execution receiving their states, run-time settings and forcings via e.g. a FEWS-to-OpenMI adapter. Since the NWS manually interacts with its models during the forecasting process, DelftFEWS has been extended with capabilities to modify time series, model parameters and states during the forecasting process. In addition, an API is being offered to

  6. NWS-CHPS, the Community Hydrologic Prediction System is operational (Invited)

    NASA Astrophysics Data System (ADS)

    Gijsbers, P.; Brunner, C.; Cajina, L.; Roe, J.; Welles, E.

    2010-12-01

    Late summer 2010, the NOAA/NWS Northwest and the Arkansas-Red Basin Forecasting Centers (RFCs) moved their primary forecasting operations to CHPS. CHPS, the Community Hydrologic Prediction System, is the new operational platform for real-time hydrological forecasting, replacing the former NWS River Forecasting System. CHPS is based on the DelftFEWS framework for operational forecasting systems, developed by Deltares, The Netherlands. With the choice for DelftFEWS, the US-NWS joined the international FEWS user community which has a large user base in Europe and is upcoming in South East Asia and Australia. Those users have chosen DelftFEWS as their operational platfrom since its xml/NetCDF based model interface concept allows them to plug-in their own models, covering a wide variety of domain models with different granularities using model adapters. Currently CHPS uses a sequence of single hydrological process models lumped at basin scale, extracted from NWSRFS, sometimes combined with HEC models (RAS and ResSim). Many other agencies use more integrated, sometimes fully distributed, hydrological models such as HBV, TOPKAPI, TOPMODEL, or HEC-HMS often in combination with commercial hydrodynamic models such as Mike11, ISIS or SOBEK. DelftFEWS also has a track record in operational groundwater, water quality, harmful algae bloom and coastal storm surge forecasting applications. An OpenMI2 adapter will be implemented over the next year to enhance integrated model capabilities by combining different sets of models in an OpenMI model composition. With these capabilities, CHPS can become an attractive community platform where academics work with federal agencies such as the NWS in implementing and transferring new knowledge and models into an operational framework. Operational forecasting demands ensemble based capabilities from CHPS to increase confidence in short, medium and long range forecasts. To address this need, NWS is developing HEFS, the Hydrologic Ensemble

  7. Long term motor function after neonatal stroke: Lesion localization above all.

    PubMed

    Dinomais, Mickael; Hertz-Pannier, Lucie; Groeschel, Samuel; Chabrier, Stéphane; Delion, Matthieu; Husson, Béatrice; Kossorotoff, Manoelle; Renaud, Cyrille; Nguyen The Tich, Sylvie

    2015-12-01

    Motor outcome is variable following neonatal arterial ischemic stroke (NAIS). We analyzed the relationship between lesion characteristics on brain MRI and motor function in children who had suffered from NAIS. Thirty eight full term born children with unilateral NAIS were investigated at the age of seven. 3D T1- and 3D FLAIR-weighted MR images were acquired on a 3T MRI scanner. Lesion characteristics were compared between patients with and without cerebral palsy (CP) using the following approaches: lesion localization either using a category-based analysis, lesion mapping as well as voxel-based lesion-symptom mapping (VLSM). Using diffusion-weighted imaging the microstructure of the cortico-spinal tract (CST) was related to the status of CP by measuring DTI parameters. Whereas children with lesions sparing the primary motor system did not develop CP, CP was always present when extensive lesions damaged at least two brain structures involving the motor system. The VLSM approach provided a statistical map that confirmed the cortical lesions in the primary motor system and revealed that CP was highly correlated with lesions in close proximity to the CST. In children with CP, diffusion parameters indicated microstructural changes in the CST at the level of internal capsule and the centrum semiovale. White matter damage of the CST in centrum semiovale was a highly reproducible marker of CP. This is the first description of the implication of this latter region in motor impairment after NAIS. In conclusion, CP in childhood was closely linked to the location of the infarct in the motor system. PMID:26512551

  8. Loss of bone calcium in exposure to 50 Hz magnetic fields.

    PubMed

    Hanafy, Enas; Elhafez, Salam; Aly, Fadel; Elazhary, Mohamed

    2008-01-01

    This study investigates the effect of whole body exposure to magnetic fields on the calcium level of blood and bone in a trial to avoid the liability of osteoporosis, fractures, and delayed union of fractures after exposure to magnetic fields present everywhere in the environment. The procedures of the study included analysis for calcium level in both bone and blood. The procedures were performed on 50 Guinea pigs equally divided into 5 groups. Groups A, B, C, and D were exposed to 50 Hz, 0.2 mT magnetic field for 30 d. Group E animals were the control. Group A was sacrificed immediately after exposure; Group B was left away from the field for 15 d for spontaneous repair; Group C received the drug Centrum dissolved in drinking water for 15 d after exposure to the magnetic field; and Group D received centrum in drinking water during the period of exposure (30 d). After sacrificing all animals, the calcium level in both bone and blood was evaluated. Values of blood analysis revealed significant increase in the blood calcium level in exposed animals compared with the control group (P < 0.002) with excess in Group A. This indicated that the calcium left the bone to the blood. Values of the bone analysis revealed significant decrease in bone calcium concentration level in Group A compared with the control group and improvement in the bone condition in Groups C and D, indicating the role of trace element after the exposure period as a compensatory agent of magnetic field damage and its role during the exposure period as a radio-protecting agent. PMID:19037789

  9. Peer-to-peer Cooperative Scheduling Architecture for National Grid Infrastructure

    NASA Astrophysics Data System (ADS)

    Matyska, Ludek; Ruda, Miroslav; Toth, Simon

    For some ten years, the Czech National Grid Infrastructure MetaCentrum uses a single central PBSPro installation to schedule jobs across the country. This centralized approach keeps a full track about all the clusters, providing support for jobs spanning several sites, implementation for the fair-share policy and better overall control of the grid environment. Despite a steady progress in the increased stability and resilience to intermittent very short network failures, growing number of sites and processors makes this architecture, with a single point of failure and scalability limits, obsolete. As a result, a new scheduling architecture is proposed, which relies on higher autonomy of clusters. It is based on a peer to peer network of semi-independent schedulers for each site or even cluster. Each scheduler accepts jobs for the whole infrastructure, cooperating with other schedulers on implementation of global policies like central job accounting, fair-share, or submission of jobs across several sites. The scheduling system is integrated with the Magrathea system to support scheduling of virtual clusters, including the setup of their internal network, again eventually spanning several sites. On the other hand, each scheduler is local to one of several clusters and is able to directly control and submit jobs to them even if the connection of other scheduling peers is lost. In parallel to the change of the overall architecture, the scheduling system itself is being replaced. Instead of PBSPro, chosen originally for its declared support of large scale distributed environment, the new scheduling architecture is based on the open-source Torque system. The implementation and support for the most desired properties in PBSPro and Torque are discussed and the necessary modifications to Torque to support the MetaCentrum scheduling architecture are presented, too.

  10. Spatial and temporal resolution effects on urban catchments with different imperviousness degrees

    NASA Astrophysics Data System (ADS)

    Cristiano, Elena; ten Veldhuis, Marie-Claire; van de Giesen, Nick C.

    2015-04-01

    One of the main problems in urban hydrological analysis is to measure the rainfall at urban scale with high resolution and use these measurements to model urban runoff processes to predict flows and reduce flood risk. With the aim of building a semi-distribute hydrological sewer model for an urban catchment, high resolution rainfall data are required as input. In this study, the sensitivity of hydrological response to high resolution precipitation data for hydrodynamic models at urban scale is evaluated with different combinations of spatial and temporal resolutions. The aim is to study sensitivity in relation to catchment characteristics, especially drainage area size, imperviousness degree and hydraulic properties such as special structures (weirs, pumping stations). Rainfall data of nine storms are considered with 4 different spatial resolutions (3000m, 1000m, 500m and 100m) combined with 4 different temporal resolutions (10min, 5min, 3min and 1min). The dual polarimetric X-band weather radar, located in the Cabauw Experimental Site for Atmospheric Research (CESAR) provided the high resolution rainfall data of these rainfall events, used to improve the sewer model. The effects of spatial-temporal rainfall input resolution on response is studied in three Districts of Rotterdam (NL): Kralingen, Spaanse Polder and Centrum district. These catchments have different average drainage area size (from 2km2 to 7km2), and different general characteristics. Centrum district and Kralingen are, indeed, more various and include residential and commercial areas, big green areas and a small industrial area, while Spaanse Polder is a industrial area, densely urbanized, and presents a high percentage of imperviousness.

  11. A Longitudinal Magnetization Transfer Imaging Evaluation of Brain Injury in a Macaque Model of NeuroAIDS

    PubMed Central

    Li, Chun-Xia; Herndon, James G.; Novembre, Francis J.

    2015-01-01

    Abstract Magnetization transfer (MT) imaging has been explored in prior studies of HIV patients and showed the potential capacity to assess brain injury after HIV infection. In the present study, adult pig-tailed macaques were infected with a highly neuropathogenic virus SIVsmmFGb. MT imaging was exploited to examine the monkey brains before simian immunodeficiency virus (SIV) inoculation and 2, 4, 8, 12, 16, and 20 weeks post-SIV inoculation. Blood samples were collected from each animal for monitoring CD4+ and CD8+ T cells before each MRI scan. The MT ratios (MTR) in several brain regions of interest were evaluated longitudinally. Significant reductions of MTR were observed in whole brain and selected regions of interest (genu, splenium, thalamus, caudate, centrum semiovale, frontal white matter, frontal gray matter, and putamen) in the SIV-infected monkeys, consistent with those reported previously in HIV patients. In particular, the longitudinal results indicate that abnormal MTR reduction can be detected as early as in 2 weeks and MTR may be more sensitive to the brain injury in cortical regions than in subcortical regions during acute SIV infection. In addition, MTR reduction in genu, centrum semiovale, and thalamus significantly correlated with the CD4+ T cell percentage decrease. Also, the MTR reduction in thalamus correlated with the CD8+ T cell percentage elevation. Taken together, this study reported the longitudinal evolution of MTR in different brain regions during SIV infection and further validates previous findings in HIV patients. The preliminary results suggest that MT imaging could be a robust and sensitive approach to characterize the neurodegeneration after SIV or HIV infection. PMID:25376011

  12. A comparison of location of acute symptomatic vs. ‘silent’ small vessel lesions

    PubMed Central

    Valdés Hernández, Maria del C.; Maconick, Lucy C.; Muñoz Maniega, Susana; Wang, Xin; Wiseman, Stewart; Armitage, Paul A.; Doubal, Fergus N.; Makin, Stephen; Sudlow, Cathie L. M.; Dennis, Martin S.; Deary, Ian J.; Bastin, Mark

    2015-01-01

    Background Acute lacunar ischaemic stroke, white matter hyperintensities, and lacunes are all features of cerebral small vessel disease. It is unclear why some small vessel disease lesions present with acute stroke symptoms, whereas others typically do not. Aim To test if lesion location could be one reason why some small vessel disease lesions present with acute stroke, whereas others accumulate covertly. Methods We identified prospectively patients who presented with acute lacunar stroke symptoms with a recent small subcortical infarct confirmed on magnetic resonance diffusion imaging. We compared the distribution of the acute infarcts with that of white matter hyperintensity and lacunes using computational image mapping methods. Results In 188 patients, mean age 67 ± standard deviation 12 years, the lesions that presented with acute lacunar ischaemic stroke were located in or near the main motor and sensory tracts in (descending order): posterior limb of the internal capsule (probability density 0·2/mm3), centrum semiovale (probability density = 0·15/mm3), medial lentiform nucleus/lateral thalamus (probability density = 0·09/mm3), and pons (probability density = 0·02/mm3). Most lacunes were in the lentiform nucleus (probability density = 0·01–0·04/mm3) or external capsule (probability density = 0·05/mm3). Most white matter hyperintensities were in centrum semiovale (except for the area affected by the acute symptomatic infarcts), external capsules, basal ganglia, and brainstem, with little overlap with the acute symptomatic infarcts (analysis of variance, P < 0·01). Conclusions Lesions that present with acute lacunar ischaemic stroke symptoms may be more likely noticed by the patient through affecting the main motor and sensory tracts, whereas white matter hyperintensity and asymptomatic lacunes mainly affect other areas. Brain location could at least partly explain the symptomatic vs. covert development of small vessel

  13. Socio-Spatial Intelligence: social media and spatial cognition for territorial behavioral analysis.

    PubMed

    Luini, Lorenzo P; Cardellicchio, Davide; Felletti, Fulvia; Marucci, Francesco S

    2015-09-01

    Investigative analysts gather data from different sources, especially from social media (SM), in order to shed light on cognitive factors that may explain criminal spatial behavior. A former research shows how tweets can be used to estimate private points of interest. Authors' aim was to demonstrate, as they extend the analysis to a wider statistical base, how social maps and Web applications could be used in investigative analysis and spatial cognition research. A total of 100 Twitter accounts with approximately 250 tweets each were submitted to common geographical techniques (measures such as Convex-Hull, Mean-Center, Median-Center, Standard-Deviation-Ellipse) in order to test the hypothesis that user areas of activity are predictable. Predictions were tested through a set of specific information: clear reference to areas of activity and clear reference about user's residence. Simple algorithms and procedures demonstrated that they could be used to predict where SM users live, giving positive results in about 4/5 cases and giving indications about their home location. In fact, all home positions were found in the Convex-Hull and most of them in the Standard-Deviation-Ellipse. Furthermore, in up to 80% of cases, houses were found within a buffer zone of 1.500 m with Median-Center as centrum (70% using Median-Center as centrum) with a minimum effectiveness threshold of 12-13 tweets. SM may help in studying people mobility and their cognition of space and, moreover, where they live, or their traveling behavior. The processing of geographical data in conjunction with the SM analysis may facilitate the construction of models describing specific behavior of people. The use of geographical information system tools and SM analysis represents an effective approach in order to acquire spatial and territorial information, referred to social relationship. The results may be used successfully in the understanding of social dynamics and for the prevention of criminal behavior

  14. Comparative morphometric study of the australopithecine vertebral series Stw-H8/H41.

    PubMed

    Sanders, W J

    1998-03-01

    Lower spinal structure correlates well with positional behavior among mammals. Nonetheless, the functional morphology of the axial post-crania of australopithecines has received less attention than their appendicular skeletons. This paper presents a detailed description and comparative morphometric analysis of the australopithecine thoracolumbar vertebral series Stw-H8/H41, and examines spinal mechanics in early hominids. Stw-H8/H41 is an important specimen, as the australopithecine vertebral sample is small, and vertebral series are more useful than isolated elements for the interpretation of spinal function. Results of the study support the interpretation that australopithecine species are highly sexually dimorphic. The study also reveals a considerable amount of morphometric variation other than size among australopithecine vertebrae, though the sample is too small and incomplete to ascertain whether this indicates significant interspecific differences in spinal function. Most importantly, structural and metric observations confirm that the morphology of the lower spine in australopithecines has no modern analogue in its entirety. Aspects of zygapophyseal structure, numerical composition of the lumbar region, and centrum wedging suggest that the australopithecine vertebral column was adapted to human-like intrinsic lumbar lordosis and stable balance of the trunk over the pelvis in sustained bipedal locomotion. However, relative centrum size in australopithecines indicates that either they had a different mechanism for channeling vertical forces through the vertebral column than humans, or differed behaviorally from humans in ways that produced smaller increments of compression across their centra. These findings have important implications for hypotheses of australopithecine positional behavior, and demonstrate that larger samples and more complete vertebral series are needed to improve our understanding of australopithecine spinal function. PMID:9547457

  15. Detection of chronic brain damage by diffusion-weighted imaging with multiple b values in patients with type 2 diabetes.

    PubMed

    Liu, Tieli; Han, Yunpeng; Tang, Lemei; Wu, Jianlin; Miao, Yanwei; Gao, Bingbing; Shang, Jin

    2016-08-01

    The aim of the study was to evaluate the performance of parameters obtained from diffusion-weighted imaging (DWI) with multiple b values in the detection of chronic brain damage in patients with type 2 diabetes.We enrolled 30 patients with or without abnormalities on brain magnetic resonance imaging (lacunar infarction, leukoaraiosis, and/or brain atrophy) and 15 nondiabetic controls; obtained DWI parameters that included apparent diffusion coefficient (ADC), fast ADC (ADCfast), slow ADC (ADCslow), fraction of fast ADC (f), distributed diffusion coefficient (DDC), and stretched exponential (α); and performed receiver operating characteristic (ROC) analysis to evaluate the performance of parameters for the detection of chronic brain damage.The parameters ADC, ADCslow, f, and DDC were increased, whereas parameters ADCfast and α were decreased in type 2 diabetes patients compared with controls without diabetes. The centrum semiovale showed the most significant change in the evaluated parameters, and the changes in parameters ADCslow, f, and DDC were greater than the changes in other parameters. There was no significance between parameters of the biexponential model (ADCfast, ADCslow, f) and parameters of the stretched model (DDC, α), but parameters of both these models were superior to the parameter of monoexponential model (ADC). Moreover, ROC analysis showed that ADCslow of the centrum semiovale supplied by the anterior cerebral artery had the highest performance for detection of chronic brain damage (area under the ROC curve of 0.987, 93.3% sensitivity, and 100% specificity).Our study shows that DWI with multiple b values can quantitatively access chronic brain damage and may be used for detection and monitoring in type 2 diabetes patients. PMID:27583912

  16. Detection of chronic brain damage by diffusion-weighted imaging with multiple b values in patients with type 2 diabetes

    PubMed Central

    Liu, Tieli; Han, Yunpeng; Tang, Lemei; Wu, Jianlin; Miao, Yanwei; Gao, Bingbing; Shang, Jin

    2016-01-01

    Abstract The aim of the study was to evaluate the performance of parameters obtained from diffusion-weighted imaging (DWI) with multiple b values in the detection of chronic brain damage in patients with type 2 diabetes. We enrolled 30 patients with or without abnormalities on brain magnetic resonance imaging (lacunar infarction, leukoaraiosis, and/or brain atrophy) and 15 nondiabetic controls; obtained DWI parameters that included apparent diffusion coefficient (ADC), fast ADC (ADCfast), slow ADC (ADCslow), fraction of fast ADC (f), distributed diffusion coefficient (DDC), and stretched exponential (α); and performed receiver operating characteristic (ROC) analysis to evaluate the performance of parameters for the detection of chronic brain damage. The parameters ADC, ADCslow, f, and DDC were increased, whereas parameters ADCfast and α were decreased in type 2 diabetes patients compared with controls without diabetes. The centrum semiovale showed the most significant change in the evaluated parameters, and the changes in parameters ADCslow, f, and DDC were greater than the changes in other parameters. There was no significance between parameters of the biexponential model (ADCfast, ADCslow, f) and parameters of the stretched model (DDC, α), but parameters of both these models were superior to the parameter of monoexponential model (ADC). Moreover, ROC analysis showed that ADCslow of the centrum semiovale supplied by the anterior cerebral artery had the highest performance for detection of chronic brain damage (area under the ROC curve of 0.987, 93.3% sensitivity, and 100% specificity). Our study shows that DWI with multiple b values can quantitatively access chronic brain damage and may be used for detection and monitoring in type 2 diabetes patients. PMID:27583912

  17. Arf6 controls retromer traffic and intracellular cholesterol distribution via a phosphoinositide-based mechanism

    PubMed Central

    Marquer, Catherine; Tian, Huasong; Yi, Julie; Bastien, Jayson; Dall'Armi, Claudia; Yang-Klingler, YoungJoo; Zhou, Bowen; Chan, Robin Barry; Di Paolo, Gilbert

    2016-01-01

    Small GTPases play a critical role in membrane traffic. Among them, Arf6 mediates transport to and from the plasma membrane, as well as phosphoinositide signalling and cholesterol homeostasis. Here we delineate the molecular basis for the link between Arf6 and cholesterol homeostasis using an inducible knockout (KO) model of mouse embryonic fibroblasts (MEFs). We find that accumulation of free cholesterol in the late endosomes/lysosomes of Arf6 KO MEFs results from mistrafficking of Niemann–Pick type C protein NPC2, a cargo of the cation-independent mannose-6-phosphate receptor (CI-M6PR). This is caused by a selective increase in an endosomal pool of phosphatidylinositol-4-phosphate (PI4P) and a perturbation of retromer, which controls the retrograde transport of CI-M6PR via sorting nexins, including the PI4P effector SNX6. Finally, reducing PI4P levels in KO MEFs through independent mechanisms rescues aberrant retromer tubulation and cholesterol mistrafficking. Our study highlights a phosphoinositide-based mechanism for control of cholesterol distribution via retromer. PMID:27336679

  18. An intervarietal genetic linkage map of Indian bread wheat (Triticum aestivum L.) and QTL maps for some metric traits.

    PubMed

    Nalini, E; Bhagwat, S G; Jawali, N

    2007-06-01

    Bread wheat (Triticum aestivum L.) exhibits very narrow genetic diversity and hence there is high relatedness among cultivated varieties. However, a population generated from an intervarietal cross, with the parents differing in a large number of traits, could lead to the generation of QTL maps which will be useful in practice. In this report a genetic linkage map of wheat is constructed using a cross between two Indian bread wheat varieties: Sonalika and Kalyansona. The linkage map consisted of 236 markers and spanned a distance of 3639 cM, with 1211.2 cM for the A genome, 1669.2 cM for the B genome, 192.4 cM for the D genome and 566.2 cM for unassigned groups. Linkage analysis defined 37 linkage groups of which 24 were assigned to 17 chromosomes. The genetic map was used to identify QTLs by composite internal mapping (CIM) for three metric traits, viz. culm length (CL), flag leaf length (FLL) and flag leaf breadth (FLB). Of 25 QTLs identified in this study, 15 have not been reported previously. Multitrait CIM (MCIM) analysis was carried out for traits that were significantly correlated such as FLB-FLL and CL-FLB-FLL. Detection of a large number of QTLs for the three traits analysed suggests that in parent cultivars that are not too diverse, the differences at genetic level detected as polymorphisms may be mostly associated with QTLs for the observed differences. PMID:17894910

  19. The application of SMA spring actuators to a lightweight modular compliant surface bioinspired robot

    NASA Astrophysics Data System (ADS)

    Stone, David L.; Cranney, John; Liang, Robert; Taya, Minoru

    2004-07-01

    The DARPA Sponsored Compliant Surface Robotics (CSR) program pursues development of a high mobility, lightweight, modular, morph-able robot for military forces in the field and for other industrial uses. The USTLAB and University of Washington Center for Intelligent Materials and Systems (CIMS) effort builds on USTLAB proof of concept feasibility studies and demonstration of a 4, 6, or 8 wheeled modular vehicle with articulated leg-wheel assemblies. A collaborative effort between USTLAB and UW-CIMS explored the application of Shape Memory Alloy Nickel Titanium Alloy springs to a leg extension actuator capable of actuating with 4.5 Newton force over a 50 mm stroke. At the completion of Phase II, we have completed mechanical and electronics engineering design and achieved conventional actuation which currently enable active articulation, enabling autonomous reconfiguration for a wide variety of terrains, including upside down operations (in case of flip over), have developed a leg extension actuator demonstration model, and we have positioned our team to pursue a small vehicle with leg extension actuators in follow on work. The CSR vehicle's modular spider-like configuration facilitates adaptation to many uses and compliance over rugged terrain. The developmental process, actuator and vehicle characteristics will be discussed.

  20. Intercomparison of Chemically Independent Peroxide Observations During INTEX-NA

    NASA Astrophysics Data System (ADS)

    O'Sullivan, D. W.; Shen, H.; Heikes, B. G.; Crounse, J. D.; Kwan, A. J.; Wennberg, P. O.; Pippin, M. R.; Crawford, J. H.

    2005-12-01

    Gas phase peroxide measurements were preformed with two analytical techniques during the INTEX-NA field project. In the first method peroxides were partitioned into an aqueous phase in cyclone separators, the aqueous collection solution was injected on to an HPLC to separate hydrogen peroxide and organic peroxides. Separated peroxides were quantified by a post column derivatization reaction with p-hydroxyphenyl acetic acid and horse radish peroxidase forming a fluorescent dimer. This method is capable of identification and quantification of C1 and C2 organic peroxides. With the dual HPLC system a 30 sec integrated sample was analyzed every 90 sec. The second method employed chemical ionization mass spectrometry to quantify the peroxides via a direct gas phase ion-molecule reaction between the peroxide and a CFO3- ion. The Caltech CIMS technique makes a 0.5 sec measurement every 5 sec. Comparison of the observations of hydrogen peroxide by both techniques on the same time base results in nearly a 90% correspondence between the techniques. Both systems also quantified peroxyacetic acid (PAA) with a 72% correspondence between observations. The majority of discrepancies between the techniques occur for observations approaching the respective detection limits. The PAA observations are the first measurements for this compound in the troposphere. The specificity of the enzyme catalyzed technique for the peroxide moiety and the characteristic retention time, coupled to the unique mass number identification using CIMS lends confidence to the correct identification and quantification of PAA.

  1. Rheological and thermal performance of newly developed binder systems for ceramic injection molding

    NASA Astrophysics Data System (ADS)

    Hausnerova, Berenika; Kasparkova, Vera; Hnatkova, Eva

    2016-05-01

    In a novel binder system, carnauba wax was considered to replace the synthetic backbone polymers (polyolefins) enhancing the environmental sustainability of Ceramic Injection Molding (CIM) technology. The paper presents comparison of the rheological performance and thermal behavior of the aluminum oxide CIM feedstocks based on a binder containing carnauba wax with those consisting of a commercial binder. Further, acrawax (N, N'-Ethylene Bis-stearamide) has been considered as another possible substitute of polyolefins. For both proposed substitutes there is a significant reduction in viscosity, and in case of carnauba wax based feedstock also in processing temperature, which is essential for injection molding of reactive powders. Thermal characterization comprised analyses of single neat binders, their mixtures and mixtures with aluminum oxide. The presence of powder lowered melting temperatures of all tested binders except of polyolefin. Further depression in melting point of poly(ethylene glycol) is observed in combination with polyolefin in the presence of powder, and it is related to changes in size of the crystalline domains.

  2. An experimental study on the effects of temperature and magnetic field strength on the magnetorheological fluid stability and MR effect.

    PubMed

    Rabbani, Yahya; Ashtiani, Mahshid; Hashemabadi, Seyed Hassan

    2015-06-14

    In this study, the stability and rheological properties of a suspension of carbonyl iron microparticles (CIMs) in silicone oil were investigated within a temperature range of 10 to 85 °C. The effect of adding two hydrophobic (stearic and palmitic) acids on the stability and magnetorheological effect of a suspension of CIMs in silicone oil was studied. According to the results, for preparing a stable and efficient magnetorheological (MR) fluid, additives should be utilized. Therefore, 3 wt% of stearic acid was added to the MR fluid which led to an enhancement of the fluid stability over 92% at 25 °C. By investigating shear stress variation due to the changes in the shear rate for acid-based MR fluids, the maximum yield stress was obtained by fitting the Bingham plastic rheological model at high shear rates. Based on the existing correlations of yield stress and either temperature or magnetic field strength, a new model was fitted to the experimental data to monitor the simultaneous effect of magnetic field strength and temperature on the maximum yield stress. The results demonstrated that as the magnetic field intensified or the temperature decreased, the maximum yield stress increased dramatically. In addition, when the MR fluid reached its magnetic saturation, the viscosity of fluid depended only on the shear rate. PMID:25940850

  3. Metabolic engineering of a synergistic pathway for n-butanol production in Saccharomyces cerevisiae

    PubMed Central

    Shi, Shuobo; Si, Tong; Liu, Zihe; Zhang, Hongfang; Ang, Ee Lui; Zhao, Huimin

    2016-01-01

    n-Butanol has several favourable properties as an advanced fuel or a platform chemical. Bio-based production of n-butanol is becoming increasingly important for sustainable chemical industry. Synthesis of n-butanol can be achieved via more than one metabolic pathway. Here we report the metabolic engineering of Saccharomyces cerevisiae to produce n-butanol through a synergistic pathway: the endogenous threonine pathway and the introduced citramalate pathway. Firstly, we characterized and optimized the endogenous threonine pathway; then, a citramalate synthase (CimA) mediated pathway was introduced to construct the synergistic pathway; next, the synergistic pathway was optimized by additional overexpression of relevant genes identified previously; meanwhile, the n-butanol production was also improved by overexpression of keto-acid decarboxylases (KDC) and alcohol dehydrogenase (ADH). After combining these strategies with co-expression of LEU1 (two copies), LEU4, LEU2 (two copies), LEU5, CimA, NFS1, ADH7 and ARO10*, we achieved an n-butanol production of 835 mg/L in the final engineered strain, which is almost 7-fold increase compared to the initial strain. Furthermore, the production showed a 3-fold of the highest titer ever reported in yeast. Therefore, the engineered yeast strain represents a promising alternative platform for n-butanol production. PMID:27161023

  4. Measurements of nitrous acid (HONO) using ion drift-chemical ionization mass spectrometry during the 2009 SHARP field campaign

    NASA Astrophysics Data System (ADS)

    Levy, Misti; Zhang, Renyi; Zheng, Jun; Zhang, Annie L.; Xu, Wen; Gomez-Hernandez, Mario; Wang, Yuan; Olaguer, Eduardo

    2014-09-01

    We have developed a novel approach for ambient measurements of nitrous acid (HONO) using ion drift-chemical ionization mass spectrometry (ID-CIMS). HONO is ionized using the sulfur hexafluoride anion, representing the first application of this reagent ion under humid tropospheric conditions. During the 2009 Study of Houston Atmospheric Radical Precursors (SHARP) Field Campaign, HONO measurements were continuously conducted from 1 May to 1 June at a site located on the campus of the University of Houston. Diurnally, HONO concentration accumulates in the late afternoon, reaches a nighttime maximum, and declines rapidly after sunrise. The nighttime HONO peaks show close correlations with the NO2 concentration, particle surface area, and soot mass concentration, indicating that the aerosol-phase chemistry likely contributes to HONO formation. A higher nighttime HONO peak concentration typically precedes a higher and earlier ozone peak concentration of the following day, by about 20 ppb higher and four hours earlier than those with a lower preceding HONO peak concentration. Because of its high detection sensitivity and fast-responding time, the ID-CIMS method described in this work may greatly facilitate HONO detection under typical tropospheric conditions.

  5. Constraining the sensitivity of iodide adduct chemical ionization mass spectrometry to multifunctional organic molecules using the collision limit and thermodynamic stability of iodide ion adducts

    DOE PAGESBeta

    Lopez-Hilfiker, Felipe D.; Iyer, Siddarth; Mohr, Claudia; Lee, Ben H.; D'Ambro, Emma L.; Kurten, Theo; Thornton, Joel A.

    2016-04-06

    The sensitivity of a chemical ionization mass spectrometer (ions formed per number density of analytes) is fundamentally limited by the collision frequency between reagent ions and analytes, known as the collision limit, the ion–molecule reaction time, and the transmission efficiency of product ions to the detector. We use the response of a time-of-flight chemical ionization mass spectrometer (ToF-CIMS) to N2O5, known to react with iodide at the collision limit, to constrain the combined effects of ion–molecule reaction time, which is strongly influenced by mixing and ion losses in the ion–molecule reaction drift tube. A mass spectrometric voltage scanning procedure elucidatesmore » the relative binding energies of the ion adducts, which influence the transmission efficiency of molecular ions through the electric fields within the vacuum chamber. Together, this information provides a critical constraint on the sensitivity of a ToF-CIMS towards a wide suite of routinely detected multifunctional organic molecules for which no calibration standards exist. Lastly, we describe the scanning procedure and collision limit determination, and we show results from the application of these constraints to the measurement of organic aerosol composition at two different field locations.« less

  6. Constraining the sensitivity of iodide adduct chemical ionization mass spectrometry to multifunctional organic molecules using the collision limit and thermodynamic stability of iodide ion adducts

    DOE PAGESBeta

    Lopez-Hilfiker, Felipe D.; Iyer, Siddarth; Mohr, Claudia; Lee, Ben H.; D'Ambro, Emma L.; Kurtén, Theo; Thornton, Joel A.

    2016-04-06

    The sensitivity of a chemical ionization mass spectrometer (ions formed per number density of analytes) is fundamentally limited by the collision frequency between reagent ions and analytes, known as the collision limit, the ion–molecule reaction time, and the transmission efficiency of product ions to the detector. We use the response of a time-of-flight chemical ionization mass spectrometer (ToF-CIMS) to N2O5, known to react with iodide at the collision limit, to constrain the combined effects of ion–molecule reaction time, which is strongly influenced by mixing and ion losses in the ion–molecule reaction drift tube. A mass spectrometric voltage scanning procedure elucidatesmore » the relative binding energies of the ion adducts, which influence the transmission efficiency of molecular ions through the electric fields within the vacuum chamber. Together, this information provides a critical constraint on the sensitivity of a ToF-CIMS towards a wide suite of routinely detected multifunctional organic molecules for which no calibration standards exist. We describe the scanning procedure and collision limit determination, and we show results from the application of these constraints to the measurement of organic aerosol composition at two different field locations.« less

  7. CAD-CAM at Bendix Kansas city: the BICAM system

    SciTech Connect

    Witte, D.R.

    1983-04-01

    Bendix Kansas City Division (BEKC) has been involved in Computer Aided Manufacturing (CAM) technology since the late 1950's when the numerical control (N/C) analysts installed computers to aid in N/C tape preparation for numerically controlled machines. Computer Aided Design (CAD) technology was introduced in 1976, when a number of 2D turnkey drafting stations were procured for printed wiring board (PWB) drawing definition and maintenance. In June, 1980, CAD-CAM Operations was formed to incorporate an integrated CAD-CAM capability into Bendix operations. In March 1982, a ninth division was added to the existing eight divisions at Bendix. Computer Integrated Manufacturing (CIM) is a small organization, reporting directly to the general manager, who has responsibility to coordinate the overall integration of computer aided systems at Bendix. As a long range plan, CIM has adopted a National Bureau of Standards (NBS) architecture titled Factory of the Future. Conceptually, the Bendix CAD-CAM system has a centrally located data base which can be accessed by both CAD and CAM tools, processes, and personnel thus forming an integrated Computer Aided Engineering (CAE) System. This is a key requirement of the Bendix CAD-CAM system that will be presented in more detail.

  8. Dielectric relaxations on erythrocyte membrane as revealed by spectrin denaturation.

    PubMed

    Ivanov, I T; Paarvanova, B

    2016-08-01

    We studied the effect of spectrin denaturation at 49.5°C (TA) on the dielectric relaxations and related changes in the complex impedance, Z*, complex capacitance, C*, and dielectric loss curve of suspensions containing human erythrocytes, erythrocyte ghost membranes (EMs) and Triton-X-100 residues of EMs. The loss curve prior to, minus the loss curve after TA, resulted in a bell-shaped peak at 1.5MHz. The changes in the real and imaginary components of Z* and C* at TA, i.e., ΔZre, ΔZim, ΔCre and ΔCim, calculated in the same way, strongly varied with frequency. Between 1.0 and 12MHz the -ΔZim vs ΔZre, and ΔCim vs ΔCre plots depicted semicircles with critical frequencies, fcr, at 2.5MHz expressing recently reported relaxation of spectrin dipoles. Between 0.02 and 1.0MHz the -ΔZim vs ΔZre plot exhibited another relaxation whose fcr mirrored that of beta relaxation. This relaxation was absent on Triton-X-shells, while on erythrocytes and EMs it was inhibited by selective dissociation of either attachment sites between spectrin and bilayer. Considering above findings and inaccessibility of cytosole to outside field at such frequencies, the latter relaxation was assumed originating from a piezoelectric effect on the highly deformable spectrin filaments. PMID:27071054

  9. Critical illness myopathy and polyneuropathy - A challenge for physiotherapists in the intensive care units.

    PubMed

    Pattanshetty, Renu B; Gaude, Gajanan S

    2011-04-01

    The development of critical patient related generalized neuromuscular weakness, referred to as critical illness polyneuropathy (CIP) and critical illness myopathy (CIM), is a major complication in patients admitted to intensive care units (ICU). Both CIP and CIM cause muscle weakness and paresis in critically ill patients during their ICU stay. Early mobilization or kinesiotherapy have shown muscle weakness reversion in critically ill patients providing faster return to function, reducing weaning time, and length of hospitalization. Exercises in the form of passive, active, and resisted forms have proved to improve strength and psychological well being. Clinical trials using neuromuscular electrical stimulation to increase muscle mass, muscle strength and improve blood circulation to the surrounding tissue have proved beneficial. The role of electrical stimulation is unproven as yet. Recent evidence indicates no difference between treated and untreated muscles. Future research is recommended to conduct clinical trials using neuromuscular electrical stimulation, exercises, and early mobilization as a treatment protocol in larger populations of patients in ICU. PMID:21814370

  10. A novel method for on-line analysis of gas and particle composition: description and evaluation of a Filter Inlet for Gases and AEROsols (FIGAERO)

    NASA Astrophysics Data System (ADS)

    Lopez-Hilfiker, F. D.; Mohr, C.; Ehn, M.; Rubach, F.; Kleist, E.; Wildt, J.; Mentel, T. F.; Lutz, A.; Hallquist, M.; Worsnop, D.; Thornton, J. A.

    2013-10-01

    We describe a novel inlet that allows measurement of both gas and particle molecular composition when coupled to mass spectrometric, chromatographic, or optical sensors: the Filter Inlet for Gas and AEROsol (FIGAERO). The design goals for the FIGAERO are to allow unperturbed observation of ambient air while simultaneously analyzing gases and collecting particulate matter on a Teflon filter via an entirely separate sampling port. The filter is analyzed periodically by the same sensor on hourly or faster timescales using temperature-programmed thermal desorption. We assess the performance of the FIGAERO by coupling it to a high-resolution time-of-flight chemical-ionization mass spectrometer (HRToF-CIMS) in laboratory chamber studies of α-pinene oxidation and field measurements at a boreal forest location. Low instrument backgrounds give detection limits of ppt or lower for compounds in the gas-phase and in the pg m-3 range for particle phase compounds. The FIGAERO-HRToF-CIMS provides molecular information about both gases and particle composition on the 1 Hz and hourly timescales, respectively for hundreds of compounds. The FIGAERO thermal desorptions are highly reproducible (better than 10%), allowing a calibrated assessment of the effective volatility of desorbing compounds and the role of thermal decomposition during the desorption process. We show that the often multi-modal desorption thermograms arising from secondary organic aerosol (SOA) provide additional insights into molecular composition and/or particle morphology, and exhibit changes with changes in SOA formation or aging pathways.

  11. Constraining the sensitivity of iodide adduct chemical ionization mass spectrometry to multifunctional organic molecules using the collision limit and thermodynamic stability of iodide ion adducts

    NASA Astrophysics Data System (ADS)

    Lopez-Hilfiker, Felipe D.; Iyer, Siddarth; Mohr, Claudia; Lee, Ben H.; D'Ambro, Emma L.; Kurtén, Theo; Thornton, Joel A.

    2016-04-01

    The sensitivity of a chemical ionization mass spectrometer (ions formed per number density of analytes) is fundamentally limited by the collision frequency between reagent ions and analytes, known as the collision limit, the ion-molecule reaction time, and the transmission efficiency of product ions to the detector. We use the response of a time-of-flight chemical ionization mass spectrometer (ToF-CIMS) to N2O5, known to react with iodide at the collision limit, to constrain the combined effects of ion-molecule reaction time, which is strongly influenced by mixing and ion losses in the ion-molecule reaction drift tube. A mass spectrometric voltage scanning procedure elucidates the relative binding energies of the ion adducts, which influence the transmission efficiency of molecular ions through the electric fields within the vacuum chamber. Together, this information provides a critical constraint on the sensitivity of a ToF-CIMS towards a wide suite of routinely detected multifunctional organic molecules for which no calibration standards exist. We describe the scanning procedure and collision limit determination, and we show results from the application of these constraints to the measurement of organic aerosol composition at two different field locations.

  12. Modeling Chinese ionospheric layer parameters based on EOF analysis

    NASA Astrophysics Data System (ADS)

    Yu, You; Wan, Weixing

    2016-04-01

    Using 24-ionosonde observations in and around China during the 20th solar cycle, an assimilative model is constructed to map the ionospheric layer parameters (foF2, hmF2, M(3000)F2, and foE) over China based on empirical orthogonal function (EOF) analysis. First, we decompose the background maps from the International Reference Ionosphere model 2007 (IRI-07) into different EOF modes. The obtained EOF modes consist of two factors: the EOF patterns and the corresponding EOF amplitudes. These two factors individually reflect the spatial distributions (e.g., the latitudinal dependence such as the equatorial ionization anomaly structure and the longitude structure with east-west difference) and temporal variations on different time scales (e.g., solar cycle, annual, semiannual, and diurnal variations) of the layer parameters. Then, the EOF patterns and long-term observations of ionosondes are assimilated to get the observed EOF amplitudes, which are further used to construct the Chinese Ionospheric Maps (CIMs) of the layer parameters. In contrast with the IRI-07 model, the mapped CIMs successfully capture the inherent temporal and spatial variations of the ionospheric layer parameters. Finally, comparison of the modeled (EOF and IRI-07 model) and observed values reveals that the EOF model reproduces the observation with smaller root-mean-square errors and higher linear correlation co- efficients. In addition, IRI discrepancy at the low latitude especially for foF2 is effectively removed by EOF model.

  13. National Implementation of an Evidence-Based HIV Prevention and Reproductive Health Program for Bahamian Youth

    PubMed Central

    Knowles, Valerie; Kaljee, Linda; Deveaux, Lynette; Lunn, Sonja; Rolle, Glenda; Stanton, Bonita

    2014-01-01

    A wide range of behavioral prevention interventions have been demonstrated through longitudinal, randomized controlled trials to reduce sexual risk behaviors. Many of these interventions have been made available at little cost for implementation on a public health scale. However, efforts to utilize such programs typically have been met with a range of problems to be addressed, leading to the recognition that new processes must be identified and integrated into the emerging field of implementation science. A randomized, controlled trial conducted among Bahamian grade six students attending fifteen elementary schools found the sexual risk-reduction intervention “Focus on Youth in the Caribbean (FOYC) and Caribbean Informed Parents and Children Together (CImPACT)” to be effective through three years of follow-up. Based on these results, the Bahamian Ministry of Education decided to implement FOYC-CImPACT throughout all government grade six classes in The Bahamas. This manuscript describes the considerations, approaches, and actions taken regarding national implementation of this evidence-based intervention. The implementation process included active data-gathering, observation and feedback components to inform subsequent intervention phases. This manuscript reviewed the success and challenges to date within this framework and described changes made to enable next stages of the national implementation effort. PMID:25197265

  14. Purification of large plasmids with methacrylate monolithic columns.

    PubMed

    Krajnc, Nika Lendero; Smrekar, Franci; Cerne, Jasmina; Raspor, Peter; Modic, Martina; Krgovic, Danijela; Strancar, Ales; Podgornik, Ales

    2009-08-01

    The rapid evolution of gene therapy and DNA vaccines results in an increasing interest in producing large quantities of pharmaceutical grade plasmid DNA. Most current clinical trials involve plasmids of 10 kb or smaller in size, however, future requirements for multigene vectors including extensive control regions may require the production of larger plasmids, e. g., 20 kb and bigger. The objective of this study was to examine certain process conditions for purification of large plasmids with the size of up to 93 kb. Since there is a lack of knowledge about production and purification of bigger plasmid DNA, cell lysis and storage conditions were investigated. The impact of chromatographic system and methacrylate monolithic column on the degradation of plasmid molecules under nonbinding conditions at different flow rates was studied. Furthermore, capacity measurements varying salt concentration in loading buffer were performed and the capacities up to 13 mg of plasmid per mL of the monolithic column were obtained. The capacity flow independence in the range from 130 to 370 cm/h was observed. Using high resolution monolithic column the separation of linear and supercoiled isoforms of large plasmids was obtained. Last but not least, since the baseline separation of RNA and pDNA was achieved, the one step purification on larger CIM DEAE 8 mL tube monolithic column was performed and the fractions were analyzed by CIM analytical monolithic columns. PMID:19598166

  15. Kavalactone metabolism in rat liver microsomes.

    PubMed

    Fu, Shuang; Rowe, Anthony; Ramzan, Iqbal

    2012-07-01

    The specific CYP enzymes involved in kavalactone (KLT) metabolism and their kinetics have not been fully examined. This study used rat liver microsomes (RLM) to determine kavain (KA), methysticin (MTS) and desmethoxyyangonin (DMY) enzyme kinetic parameters, to elucidate the major CYP450 isoforms involved in KLT metabolism and to examine gender differences in KLT metabolism. Formation of the major KLT metabolites was first-order, consistent with classic enzyme kinetics. In both male and female RLM, clotrimazole (CLO) was the most potent inhibitor of KA and MTS metabolism. This suggests CYP3A1/3A23 (females) and CYP3A2 (males) are the main isoenzymes involved in the metabolism of these KLTs in rats, while the roles of CYP1A2, -2 C6, -2 C9, -2E1 and -3A4 are limited. Desmethoxyyangonin metabolism was equally inhibited by cimetidine (CIM) and CLO in females, and CIM and nortriptyline in males. This implies that DMY metabolism involves CYP2C6 and CYP2C11 in males, and CPY2C12 in females. CYP3A1/3A23 may also be involved in females. PMID:22807255

  16. Quasi-Liquid Layer Formation on Ice under Stratospheric Conditions

    NASA Technical Reports Server (NTRS)

    McNeill, V. Faye; Loerting, Thomas; Trout, Bernhardt L.; Molina, Luisa T.; Molina, Mario J.

    2004-01-01

    Characterization of the interaction of hydrogen chloride (HCl) with ice is essential to understanding at a molecular level the processes responsible for ozone depletion involving polar stratospheric cloud (PSC) particles. To explain the catalytic role PSC particle surfaces play during chlorine activation, we proposed previously that HCl induces the formation of a disordered region on the ice surface, a quasi-liquid layer (QLL), at stratospheric conditions. The QLL is known to exist in pure ice crystals at temperatures near the melting point, but its existence at stratospheric temperatures (-85 C to -70 C) had not been reported yet. We studied the interaction of HCl with ice under stratospheric conditions using the complementary approach of a) ellipsometry to directly monitor the ice surface, using chemical ionization mass spectrometry (CIMS) to monitor the gas phase species present in the ellipsometry experiments, and b) flow-tube experiments with CIMS detection. Here we show that trace amounts of HCl induce QLL formation at stratospheric temperatures, and that the QLL enhances the chlorine-activation reaction of HCl with chlorine nitrate (ClONO2), and also enhances acetic acid (CH3COOH) adsorption.

  17. Skin capacitance imaging and corneosurfametry. A comparative assessment of the impact of surfactants on stratum corneum.

    PubMed

    Xhauflaire-Uhoda, Emmanuelle; Loussouarn, Geneviève; Haubrechts, Christelle; Léger, Didier Saint; Piérard, Gérald E

    2006-05-01

    Silicon image sensor (SIS) technology was recently introduced as an innovative tool (SkinChip, L'Oréal) providing sensitive imaging of the skin capacitance. This method can detect discrete focal variations in skin surface hydration, and thus early discrete manifestations of skin irritation induced by surfactants. In the present in vivo study, 2 neat and diluted shampoos, and 5% and 10% sodium laurylsulfate solutions were tested on human skin. Each surfactant solution was gently rubbed on the skin using wet hair wicks mimicking the casual use of a shampoo on the scalp. Clinical and SIS evaluations were carried out. In addition, the same products were tested using the ex vivo corneosurfametry bioassay performed on human stratum corneum (SC) harvested by cyanoacrylate skin surface strippings. The colourimetric index of mildness (CIM) was measured on these samples. The product reactivity with the SC was recognized by darker skin capacitance images, and by both lowered SkinChip-generated values and lowered CIM values. The extent in changes varied according to the nature of the test products and their concentrations. The SkinChip image changes likely corresponded to the acute surfactant-induced water swelling of the corneocytes. Skin capacitance imaging and corneosurfametry allow to disclose discrete surfactant-induced alterations of corneocytes. PMID:16689808

  18. Metabolic engineering of Escherichia coli for the production of 1-propanol.

    PubMed

    Choi, Yong Jun; Park, Jin Hwan; Kim, Tae Yong; Lee, Sang Yup

    2012-09-01

    An engineered Escherichia coli strain that produces 1-propanol under aerobic condition was developed based on an L-threonine-overproducing E. coli strain. First, a feedback resistant ilvA gene encoding threonine dehydratase was introduced and the competing metabolic pathway genes were deleted. Further engineering was performed by overexpressing the cimA gene encoding citramalate synthase and the ackA gene encoding acetate kinase A/propionate kinase II, introducing a modified adhE gene encoding an aerobically functional AdhE, and by deleting the rpoS gene encoding the stationary phase sigma factor. Fed-batch culture of the final engineered strain harboring pBRthrABC-tac-cimA-tac-ackA and pTacDA-tac-adhE(mut) allowed production of 10.8 g L(-1) of 1-propanol with the yield and productivity of 0.107 g g(-1) and 0.144 g L(-1) h(-1), respectively, from 100 g L(-1) of glucose, and 10.3 g L(-1) of 1-propanol with the yield and productivity of 0.259 g g(-1) and 0.083 g L(-1) h(-1), respectively, from 40 g L(-1) glycerol. PMID:22871504

  19. A comprehensive survey on isoleucine biosynthesis pathways in seven epidemic Leptospira interrogans reference strains of China.

    PubMed

    Zou, Ying; Guo, Xiaokui; Picardeau, Mathieu; Xu, Hai; Zhao, Guoping

    2007-04-01

    Previous studies have indicated that different species of Leptospira synthesize isoleucine via either pyruvate and/or threonine pathways. Seven epidemic Leptospira interrogans reference strains from China belonging to different serovars, together with three saprophytic strains of Leptospira biflexa and Leptospira meyeri, were analysed. The isoleucine biosynthesis properties were studied firstly by measuring the key enzymes of the two pathways, citramalate synthase (CimA, CE4.1.3.-) and threonine deaminase (IlvA, CE4.2.1.16), from cell extracts of the bacteria. Meanwhile, alpha-isopropylmalate synthase (LeuA, CE4.2.1.12), the key enzyme of leucine biosynthesis, was also measured as a control. It was found that all L. interrogans strains synthesized isoleucine via the pyruvate pathway exclusively, but L. biflexa and L. meyeri used both pathways. Dot-Blot and PCR amplification of both cimA and ilvA genes in the corresponding strains provided additional evidence consistent with the data of enzymatic assays. Although it is evident that leptospires' isoleucine biosynthesis may preferentially adapt either to the pyruvate pathway exclusively for pathogens or to the combination of both pyruvate and threonine pathways for saprophytes, broader sampling with careful genomospecies identification is needed for a solid conclusion. PMID:17227461

  20. Degradation of Saccharomyces cervisiae Rck2 upon exposure of cells to high levels of zinc is dependent on Pep4.

    PubMed

    Swaminathan, Swarna; Sunnerhagen, Per

    2005-06-01

    In undisturbed cells, the MAPK-activated protein kinase Rck2 of Saccharomyces cerevisiae is a stable protein with a turnover time exceeding 60 min. However, we have found that Rck2 is subject to intracellular degradation after exposure of cells to Zn2+ concentrations of 5 mM or more. In high-zinc medium, most of the Rck2 pool is degraded within 5 min. This degradation is blocked by inhibiting the vacuolar proteolytic pathway with the protease inhibitor phenyl methyl sulphonyl fluoride or by mutation of the PEP4 gene. By contrast, blocking the proteasomal pathway with the inhibitor MG132 does not prevent Rck2 degradation upon addition of Zn2+, nor is degradation inhibited in the proteasomal mutations pre1 pre2, cim3, or cim5. The stability of Rck2 is not affected by any of the other stress conditions examined, or by growth rate. Possible mechanisms of the degradation of Rck2 under high zinc conditions, and its physiological significance, are discussed. PMID:15887030

  1. Metabolic engineering of a synergistic pathway for n-butanol production in Saccharomyces cerevisiae.

    PubMed

    Shi, Shuobo; Si, Tong; Liu, Zihe; Zhang, Hongfang; Ang, Ee Lui; Zhao, Huimin

    2016-01-01

    n-Butanol has several favourable properties as an advanced fuel or a platform chemical. Bio-based production of n-butanol is becoming increasingly important for sustainable chemical industry. Synthesis of n-butanol can be achieved via more than one metabolic pathway. Here we report the metabolic engineering of Saccharomyces cerevisiae to produce n-butanol through a synergistic pathway: the endogenous threonine pathway and the introduced citramalate pathway. Firstly, we characterized and optimized the endogenous threonine pathway; then, a citramalate synthase (CimA) mediated pathway was introduced to construct the synergistic pathway; next, the synergistic pathway was optimized by additional overexpression of relevant genes identified previously; meanwhile, the n-butanol production was also improved by overexpression of keto-acid decarboxylases (KDC) and alcohol dehydrogenase (ADH). After combining these strategies with co-expression of LEU1 (two copies), LEU4, LEU2 (two copies), LEU5, CimA, NFS1, ADH7 and ARO10(*), we achieved an n-butanol production of 835 mg/L in the final engineered strain, which is almost 7-fold increase compared to the initial strain. Furthermore, the production showed a 3-fold of the highest titer ever reported in yeast. Therefore, the engineered yeast strain represents a promising alternative platform for n-butanol production. PMID:27161023

  2. Reactive processing of formaldehyde and acetaldehyde in aqueous aerosol mimics: surface tension depression and secondary organic products

    NASA Astrophysics Data System (ADS)

    Li, Z.; Schwier, A. N.; Sareen, N.; McNeill, V. F.

    2011-11-01

    The reactive uptake of carbonyl-containing volatile organic compounds (cVOCs) by aqueous atmospheric aerosols is a likely source of particulate organic material. The aqueous-phase secondary organic products of some cVOCs are surface-active. Therefore, cVOC uptake can lead to organic film formation at the gas-aerosol interface and changes in aerosol surface tension. We examined the chemical reactions of two abundant cVOCs, formaldehyde and acetaldehyde, in water and aqueous ammonium sulfate (AS) solutions mimicking tropospheric aerosols. Secondary organic products were identified using Aerosol Chemical Ionization Mass Spectrometry (Aerosol-CIMS), and changes in surface tension were monitored using pendant drop tensiometry. Hemiacetal oligomers and aldol condensation products were identified using Aerosol-CIMS. Acetaldehyde depresses surface tension to 65(±2) dyn cm-1 in pure water (a 10% surface tension reduction from that of pure water) and 62(±1) dyn cm-1 in AS solutions (a 20.6% reduction from that of a 3.1 M AS solution). Surface tension depression by formaldehyde in pure water is negligible; in AS solutions, a 9% reduction in surface tension is observed. Mixtures of these species were also studied in combination with methylglyoxal in order to evaluate the influence of cross-reactions on surface tension depression and product formation in these systems. We find that surface tension depression in the solutions containing mixed cVOCs exceeds that predicted by an additive model based on the single-species isotherms.

  3. Reactive processing of formaldehyde and acetaldehyde in aqueous aerosol mimics: surface tension depression and secondary organic products

    NASA Astrophysics Data System (ADS)

    Li, Z.; Schwier, A. N.; Sareen, N.; McNeill, V. F.

    2011-07-01

    The reactive uptake of carbonyl-containing volatile organic compounds (cVOCs) by aqueous atmospheric aerosols is a likely source of particulate organic material. The aqueous-phase secondary organic products of some cVOCs are surface-active. Therefore, cVOC uptake can lead to organic film formation at the gas-aerosol interface and changes in aerosol surface tension. We examined the chemical reactions of two abundant cVOCs, formaldehyde and acetaldehyde, in water and aqueous ammonium sulfate (AS) solutions mimicking tropospheric aerosols. Secondary organic products were identified using Aerosol Chemical Ionization Mass Spectrometry (Aerosol-CIMS), and changes in surface tension were monitored using pendant drop tensiometry. Hemiacetal oligomers and aldol condensation products were identified using Aerosol-CIMS. A hemiacetal sulfate ester was tentatively identified in the formaldehyde-AS system. Acetaldehyde depresses surface tension to 65(±2) dyn cm-1 in pure water and 62(±1) dyn cm-1 in AS solutions. Surface tension depression by formaldehyde in pure water is negligible; in AS solutions, a 9 % reduction in surface tension is observed. Mixtures of these species were also studied in combination with methylglyoxal in order to evaluate the influence of cross-reactions on surface tension depression and product formation in these systems. We find that surface tension depression in the solutions containing mixed cVOCs exceeds that predicted by an additive model based on the single-species isotherms.

  4. Secondary organic material formed by methylglyoxal in aqueous aerosol mimics

    NASA Astrophysics Data System (ADS)

    Sareen, N.; Schwier, A. N.; Shapiro, E. L.; Mitroo, D.; McNeill, V. F.

    2010-02-01

    We show that methylglyoxal forms light-absorbing secondary organic material in aqueous ammonium sulfate and ammonium nitrate solutions mimicking tropospheric aerosol particles. The kinetics were characterized using UV-Vis spectrophotometry. The results suggest that the bimolecular reaction of methylglyoxal with an ammonium or hydronium ion is the rate-limiting step for the formation of light-absorbing species, with kNH4+II=5×10-6 M-1 min-1 and kH3O+II≤10-3 M-1 min-1. Evidence of aldol condensation products and oligomeric species up to 759 amu was found using chemical ionization mass spectrometry with a volatilization flow tube inlet (Aerosol-CIMS). Tentative identifications of carbon-nitrogen species and a sulfur-containing compound were also made using Aerosol-CIMS. Aqueous solutions of methylglyoxal, with and without inorganic salts, exhibit significant surface tension depression. These observations add to the growing body of evidence that dicarbonyl compounds may form secondary organic material in the aerosol aqueous phase, and that secondary organic aerosol formation via heterogeneous processes may affect seed aerosol properties.

  5. Methane, benzene and alkyl benzene cold start emission data of gasoline-driven passenger cars representing the vehicle technology of the last two decades

    NASA Astrophysics Data System (ADS)

    Heeb, Norbert V.; Forss, Anna-Maria; Saxer, Christian J.; Wilhelm, Patrick

    The US urban driving cycle (FTP-75) is widely used to estimate both the emissions under hot engine conditions as well as those associated with the cold start. Applying fast analysis techniques such as chemical ionization mass spectrometry (CI-MS) the warm-up behavior of individual vehicles can be monitored at a time resolution of 1 s. CI-MS has been used to investigate the emissions of methane, benzene and the alkyl benzene class of compounds. The amount of the emissions at cold start influence was deduced from the time-resolved emission data of four gasoline-driven vehicle classes representing the vehicle technology of the last two decades. Overall, the emissions of five EURO-0, 20 EURO-1, 18 EURO-2 and so far of six EURO-3 passenger cars were recorded. The test vehicles were selected from the currently operating Swiss car fleet based on the car sales statistics. The average methane, benzene and alkyl benzene cold start emissions are reported using both, the traditional bag method as well as the regression model. At room temperature a clear reduction of 94%, 81% and 85% was found for the methane, benzene and alkyl benzene cold start emissions from EURO-0 to EURO-3 technology, respectively.

  6. Design and implementation of a Windows NT network to support CNC activities

    NASA Technical Reports Server (NTRS)

    Shearrow, C. A.

    1996-01-01

    The Manufacturing, Materials, & Processes Technology Division is undergoing dramatic changes to bring it's manufacturing practices current with today's technological revolution. The Division is developing Computer Automated Design and Computer Automated Manufacturing (CAD/CAM) abilities. The development of resource tracking is underway in the form of an accounting software package called Infisy. These two efforts will bring the division into the 1980's in relationship to manufacturing processes. Computer Integrated Manufacturing (CIM) is the final phase of change to be implemented. This document is a qualitative study and application of a CIM application capable of finishing the changes necessary to bring the manufacturing practices into the 1990's. The documentation provided in this qualitative research effort includes discovery of the current status of manufacturing in the Manufacturing, Materials, & Processes Technology Division including the software, hardware, network and mode of operation. The proposed direction of research included a network design, computers to be used, software to be used, machine to computer connections, estimate a timeline for implementation, and a cost estimate. Recommendation for the division's improvement include action to be taken, software to utilize, and computer configurations.

  7. Quantification of Gas-Wall Partitioning in Teflon Environmental Chambers Using Rapid Bursts of Low-Volatility Oxidized Species Generated in Situ.

    PubMed

    Krechmer, Jordan E; Pagonis, Demetrios; Ziemann, Paul J; Jimenez, Jose L

    2016-06-01

    Partitioning of gas-phase organic compounds to the walls of Teflon environmental chambers is a recently reported phenomenon than can affect the yields of reaction products and secondary organic aerosol (SOA) measured in laboratory experiments. Reported time scales for reaching gas-wall partitioning (GWP) equilibrium (τGWE) differ by up to 3 orders of magnitude, however, leading to predicted effects that vary from substantial to negligible. A new technique is demonstrated here in which semi- and low-volatility oxidized organic compounds (saturation concentration c* < 100 μg m(-3)) were photochemically generated in rapid bursts in situ in an 8 m(3) environmental chamber, and then their decay in the absence of aerosol was measured using a high-resolution chemical ionization mass spectrometer (CIMS) equipped with an "inlet-less" NO3(-) ion source. Measured τGWE were 7-13 min (rel. std. dev. 33%) for all compounds. The fraction of each compound that partitioned to the walls at equilibrium follows absorptive partitioning theory with an equivalent wall mass concentration in the range 0.3-10 mg m(-3). Measurements using a CIMS equipped with a standard ion-molecule reaction region showed large biases due to the contact of compounds with walls. On the basis of these results, a set of parameters is proposed for modeling GWP in chamber experiments. PMID:27138683

  8. MAPPING OF QTLs FOR ORAL ALCOHOL SELF-ADMINISTRATION IN B6.C AND B6.I QUASI-CONGENIC RQI STRAINS

    PubMed Central

    Vadasz, Csaba; Saito, Mariko; Gyetvai, Beatrix M.; Oros, Melinda; Szakall, Istvan; Kovacs, Krisztina M.; Prasad, Vidudala V.T.S.; Morahan, Grant; Toth, Reka

    2008-01-01

    One strategy to identify neurochemical pathways of addiction is to map the relevant genes. In the present study we used 43 B6.C and 35 B6.I inbred RQI mouse strains, carrying <3% donor genome on C57BL/6ByJ background, for gene mapping. The strains were phenotyped for consumption of alcohol (12% v/v) in a two-bottle-choice paradigm, and genotyped for 396 microsatellite markers. The current mapping study extends our earlier experiment scanning five mouse chromosomes (1) to a whole-genome study, and discusses the differences and limitations. Data were analyzed with composite interval (CIM) and multiple interval (MIM) QTL mapping methods. CIM of B6.C strains detected significant QTLs on chrs. 6 and 12. A suggestive, but not significant, locus was detected in the B6.I strains on chr. 12. The best MIM model for B6.C strains confirmed one QTL on chr. 6 and one QTL on chr. 12., while the MIM model for the B6.I strains confirmed the suggestive locus on chr. 12. Some of the QTLs for alcohol consumption are new, while others confirm previously reported QTLs for alcohol preference, and alcohol acceptance. PMID:17273929

  9. Measurements of nitrous acid (HONO) in urban area of Shanghai, China.

    PubMed

    Bernard, François; Cazaunau, Mathieu; Grosselin, Benoît; Zhou, Bin; Zheng, Jun; Liang, Peng; Zhang, Yujie; Ye, Xingnan; Daële, Véronique; Mu, Yujing; Zhang, Renyi; Chen, Jianmin; Mellouki, Abdelwahid

    2016-03-01

    Nitrous acid (HONO), as a precursor of the hydroxyl radical (OH), plays an important role in the photochemistry of the troposphere, especially in the polluted urban atmosphere. A field campaign was conducted to measure atmospheric HONO concentration and that of other pollutants (such as NO2 and particle mass concentration) in the autumn of 2009 at Shanghai urban areas. HONO mixing ratios were simultaneously measured by three different techniques: long path absorption photometer (LOPAP), differential optical absorption spectroscopy (DOAS) and chemical ionization mass spectrometer (CIMS). The measurements showed that the mixing ratios of HONO were highly variable and depended strongly on meteorological parameters. The HONO levels ranged from 0.5 to 7 ppb with maximum values during early morning and minimum levels during late afternoon. The three instruments reproduced consistent diurnal pattern of HONO concentrations with higher concentration during the night compared to the daylight hours. Comparison of HONOLOPAP/HONOCIMS ratios during daytime and nighttime periods exhibited a non-systematic disagreement of 0.93 and 1.16, respectively. This would indicate different chemical compositions of sampled air for the LOPAP and the CIMS instruments during daytime and nighttime periods, which have possibly affected measurements. Mean HONO concentration reported by LOPAP was 33 % higher than by DOAS on the whole period with no significant difference between daytime and nighttime periods. This revealed a systematic deviation from both instruments. The present data provides complementary information of HONO ambient levels in the atmosphere of Shanghai urban areas. PMID:26590058

  10. Secondary formation of nitrated phenols: insights from observations during the Uintah Basin Winter Ozone Study (UBWOS) 2014

    NASA Astrophysics Data System (ADS)

    Yuan, B.; Liggio, J.; Wentzell, J.; Li, S.-M.; Stark, H.; Roberts, J. M.; Gilman, J.; Lerner, B.; Warneke, C.; Li, R.; Leithead, A.; Osthoff, H. D.; Wild, R.; Brown, S. S.; de Gouw, J. A.

    2015-10-01

    We describe the results from online measurements of nitrated phenols using a time of flight chemical ionization mass spectrometer (ToF-CIMS) with acetate as reagent ion in an oil and gas production region in January and February of 2014. Strong diurnal profiles were observed for nitrated phenols, with concentration maxima at night. Based on known markers (CH4, NOx, CO2), primary emissions of nitrated phenols were not important in this study. A box model was used to simulate secondary formation of phenol, nitrophenol (NP) and dinitrophenols (DNP). The box model results indicate that oxidation of aromatics in the gas phase can explain the observed concentrations of NP and DNP in this study. Photolysis was the most efficient loss pathway for NP in the gas phase. We show that aqueous-phase reactions and heterogeneous reactions were minor sources of nitrated phenols in our study. This study demonstrates that the emergence of new ToF-CIMS (including PTR-TOF) techniques allows for the measurement of intermediate oxygenates at low levels and these measurements improve our understanding of the evolution of primary VOCs in the atmosphere.

  11. Secondary formation of nitrated phenols: insights from observations during the Uintah Basin Winter Ozone Study (UBWOS) 2014

    NASA Astrophysics Data System (ADS)

    Yuan, Bin; Liggio, John; Wentzell, Jeremy; Li, Shao-Meng; Stark, Harald; Roberts, James M.; Gilman, Jessica; Lerner, Brian; Warneke, Carsten; Li, Rui; Leithead, Amy; Osthoff, Hans D.; Wild, Robert; Brown, Steven S.; de Gouw, Joost A.

    2016-02-01

    We describe the results from online measurements of nitrated phenols using a time-of-flight chemical ionization mass spectrometer (ToF-CIMS) with acetate as reagent ion in an oil and gas production region in January and February of 2014. Strong diurnal profiles were observed for nitrated phenols, with concentration maxima at night. Based on known markers (CH4, NOx, CO2), primary emissions of nitrated phenols were not important in this study. A box model was used to simulate secondary formation of phenol, nitrophenol (NP), and dinitrophenols (DNP). The box model results indicate that oxidation of aromatics in the gas phase can explain the observed concentrations of NP and DNP in this study. Photolysis was the most efficient loss pathway for NP in the gas phase. We show that aqueous-phase reactions and heterogeneous reactions were minor sources of nitrated phenols in our study. This study demonstrates that the emergence of new ToF-CIMS (including PTR-TOF) techniques allows for the measurement of intermediate oxygenates at low levels and these measurements improve our understanding on the evolution of primary VOCs in the atmosphere.

  12. Towards intraoperative surgical margin assessment and visualization using bioimpedance properties of the tissue

    NASA Astrophysics Data System (ADS)

    Khan, Shadab; Mahara, Aditya; Hyams, Elias S.; Schned, Alan; Halter, Ryan

    2015-03-01

    Prostate cancer (PCa) has a high 10-year recurrence rate, making PCa the second leading cause of cancer-specific mortality among men in the USA. PCa recurrences are often predicted by assessing the status of surgical margins (SM) with positive surgical margins (PSM) increasing the chances of biochemical recurrence by 2-4 times. To this end, an SM assessment system using Electrical Impedance Spectroscopy (EIS) was developed with a microendoscopic probe. This system measures the tissue bioimpedance over a range of frequencies (1 kHz to 1MHz), and computes a Composite Impedance Metric (CIM). CIM can be used to classify tissue as benign or cancerous. The system was used to collect the impedance spectra from excised prostates, which were obtained from men undergoing radical prostatectomy. The data revealed statistically significant (p<0.05) differences in the impedance properties of the benign and tumorous tissues, and between different tissue morphologies. To visualize the results of SM-assessment, a visualization tool using da Vinci stereo laparoscope is being developed. Together with the visualization tool, the EIS-based SM assessment system can be potentially used to intraoperatively classify tissues and display the results on the surgical console with a video feed of the surgical site, thereby augmenting a surgeon's view of the site and providing a potential solution to the intraoperative SM assessment needs.

  13. High similarity of novel orthoreovirus detected in a child hospitalized with acute gastroenteritis to mammalian orthoreoviruses found in bats in Europe.

    PubMed

    Steyer, Andrej; Gutiérrez-Aguire, Ion; Kolenc, Marko; Koren, Simon; Kutnjak, Denis; Pokorn, Marko; Poljšak-Prijatelj, Mateja; Racki, Nejc; Ravnikar, Maja; Sagadin, Martin; Fratnik Steyer, Adela; Toplak, Nataša

    2013-11-01

    Mammalian orthoreoviruses (MRVs) are known to cause mild enteric and respiratory infections in humans. They are widespread and infect a broad spectrum of mammals. We report here the first case of an MRV detected in a child with acute gastroenteritis, which showed the highest similarity to an MRV reported recently in European bats. An examination of a stool sample from the child was negative for most common viral and bacterial pathogens. Reovirus particles were identified by electron microscopic examination of both the stool suspension and cell culture supernatant. The whole-genome sequence was obtained with the Ion Torrent next-generation sequencing platform. Prior to sequencing, the stool sample suspension and cell culture supernatant were pretreated with nucleases and/or the convective interaction medium (CIM) monolithic chromatographic method to purify and concentrate the target viral nucleic acid. Whole-genome sequence analysis revealed that the Slovenian SI-MRV01 isolate was most similar to an MRV found in a bat in Germany. High similarity was shared in all genome segments, with nucleotide and amino acid identities between 93.8 to 99.0% and 98.4 to 99.7%, respectively. It was shown that CIM monolithic chromatography alone is an efficient method for enriching the sample in viral particles before nucleic acid isolation and next-generation sequencing application. PMID:24025904

  14. Missing SO2 oxidant in the coastal atmosphere? - observations from high-resolution measurements of OH and atmospheric sulfur compounds

    NASA Astrophysics Data System (ADS)

    Berresheim, H.; Adam, M.; Monahan, C.; O'Dowd, C.; Plane, J. M. C.; Bohn, B.; Rohrer, F.

    2014-11-01

    Diurnal and seasonal variations of gaseous sulfuric acid (H2SO4) and methane sulfonic acid (MSA) were measured in NE Atlantic air at the Mace Head atmospheric research station during the years 2010 and 2011. The measurements utilized selected-ion chemical ionization mass spectrometry (SI/CIMS) with a detection limit for both compounds of 4.3 × 104 cm-3 at 5 min signal integration. The H2SO4 and MSA gas-phase concentrations were analyzed in conjunction with the condensational sink for both compounds derived from 3 nm to 10 μm (aerodynamic diameter) aerosol size distributions. Accommodation coefficients of 1.0 for H2SO4 and 0.12 for MSA were assumed, leading to estimated atmospheric lifetimes on the order of 7 and 25 min, respectively. With the SI/CIMS instrument in OH measurement mode alternating between OH signal and background (non-OH) signal, evidence was obtained for the presence of one or more unknown oxidants of SO2 in addition to OH. Depending on the nature of the oxidant(s), its ambient concentration may be enhanced in the CIMS inlet system by additional production. The apparent unknown SO2 oxidant was additionally confirmed by direct measurements of SO2 in conjunction with calculated H2SO4 concentrations. The calculated H2SO4 concentrations were consistently lower than the measured concentrations by a factor of 4.7 ± 2.4 when considering the oxidation of SO2 by OH as the only source of H2SO4. Both the OH and the background signal were also observed to increase significantly during daytime aerosol nucleation events, independent of the ozone photolysis frequency, J(O1D), and were followed by peaks in both H2SO4 and MSA concentrations. This suggests a strong relation between the unknown oxidant(s), OH chemistry, and the atmospheric photolysis and photooxidation of biogenic iodine compounds. As to the identity of the atmospheric SO2 oxidant(s), we have been able to exclude ClO, BrO, IO, and OIO as possible candidates based on {ab initio} calculations

  15. Interval and composite interval mapping of somatic cell score, yield, and components of milk in dairy cattle.

    PubMed

    Rodriguez-Zas, S L; Southey, B R; Heyen, D W; Lewin, H A

    2002-11-01

    Single-marker, interval-mapping (IM) and composite interval mapping (CIM) were used to detect quantitative trait loci (QTL) controlling milk, fat and protein yields, and somatic cell score (SCS). A granddaughter design was used to combine molecular genetic information with predicted transmitting abilities (PTA) and estimated daughter yield deviations (DYD) from eight Dairy Bull DNA Repository Holstein families. Models that included and excluded weights accounting for the uncertainty of the response variable were evaluated in each trait, family and phenotype (DYD and PTA) combination. The genotypic information consisted of 174 microsatellite markers along 29 Bos taurus autosomes. The average number of informative markers per autosome was three and the number of informative sons per family and marker varied between 21 and 173. Within-family results from the least squares single-marker analyses were used in expectation-maximization likelihood IM and CIM implemented with QTL Cartographer. Different CIM model specifications, offering complementary control on the background QTL outside the interval under study, were evaluated. Permutation techniques were used to calculate the genome-wide threshold test statistic values based on 1,000 samples. Results from the DYD and PTA analyses were highly consistent across traits and families. The minor differences in the estimates from the models that accounted for or ignored the uncertainty of the DYD (variance) and PTA (inverse of reliability) may be associated to the elevated and consistent precision of the DYD and PTA among sons. The CIM model best supported by the data had 10 markers controlling for background effects. On autosome (BTA) three, a QTL at 32 cM influencing protein yield was located in family five and a QTL at 74 cM for fat yield was located in family eight. Two map positions associated with SCS were detected on BTA 21, one at 33 cM in family one and the other at 84 cM in family three. A QTL for protein yield was

  16. Dealing with the safety paradox of delta-branches closure; a geomorphology study

    NASA Astrophysics Data System (ADS)

    Sloff, C.; Tromp, R.; Sieben, A.

    2013-12-01

    Closing off estuaries by dams is a conventional solution to reduce flood risks and salt intrusion in river deltas. However, if not all branches are closed, residual tidal currents develop or increase in connecting channels between the closed and open branches. These channels start to erode, causing bank instability and possible failure of levees. Hence, paradoxically, the intended increase in safety by this closure creates a new threat with increased flood risks. We illustrate this for existing channel erosion and dike stability problems in the Dutch Rhine River delta in the Netherlands, as well as for proposed future closure works in the Mekong River in Vietnam. Crucial for assessing and dealing with the erosion problems, is a proper prediction of flow conditions and of bed erodibility. The channels incise ancient deltaic deposits, consisting of diverse sections and layers of sand, clay and peat with diverse states of compaction. In the presented studies we show how we applied Delft3D to model the full delta, with all relevant dynamics and complex interactions between tidal flow and river discharges. For the Dutch situation, we simulated the long-term fate of the eroding interconnecting channels, applying a detailed description of subsurface heterogeneous erodibility (space and depth varying). Since these rivers are incising slowly in clay and peat beds covering highly-erodible sand layers, alternate sections occur of undersupplied ';fixed' beds, and of very deep scour holes. For the Vietnam case, we show how the location of a barrier and operation of gates, can be used to control both the salinity intrusion and channel erosion for the Mekong delta. Although the morphology studies for the Dutch delta with high-density data availability obviously justify a detailed Delft3D approach, it is shown that even in the Mekong delta with poor data quality, a coarse-grid large-scale Delft3D model can provide the answers necessary for planning the closure works and potential

  17. Development of an Advanced Technique to Correct Along-Track InSAR-Derived Surface Current Fields for Contributions of Wave Motions

    NASA Astrophysics Data System (ADS)

    Smith, C.; Romeiser, R.; Reniers, A.; MacMahan, J.

    2014-12-01

    The feasibility of surface current measurements by airborne and spaceborne along-track interferometric synthetic aperture radar (along-track InSAR) has been demonstrated on a number of occasions. Since the Doppler shifts detected by the radar include contributions of surface wave motions, a correction for these contributions has to be applied, which is often estimated as a mean correction for the entire current field on the basis of a simple theoretical model. In coastal areas and river estuaries with complex current and wave patterns, this approach is not adequate because one has to account for spatial variations in the wave field and in the corresponding corrections for the current field, which can be on the same order of magnitude as the actual surface currents of interest. Here we test the ability of a numerical near-shore hindcast model (Delft3D) to produce a wave field to be used for more appropriate computations of corrections for the along-track InSAR data. Our study was conducted at the mouth of the Columbia River on the West Coast of the U.S. during the spring of 2013. Over the course of the experiment, seven TerraSAR-X along-track InSAR images were acquired as well as a variety of in-situ data sets, such as trajectories of GPS-equipped Lagrangian drifters and velocity profiles from acoustic Doppler current profilers (ADCP). We use the in-situ data to validate our Delft3D model results, and we try to relate spatially varying differences between the measured and simulated surface currents and the TerraSAR-X derived Doppler velocities to the wave spectra obtained from Delft3D and to wave patterns observed in the SAR images. The long-term objective of this work is to derive the wave information and the corresponding velocity corrections from signatures contained in the along-track InSAR data set itself, such that a completely self-consistent correction of along-track InSAR-derived surface current fields for the contributions of spatially varying wave motions

  18. OFFGAS GENERATION FROM THE DISPOSITION OF SCRAP PLUTONIUM BY VITRIFICATION SIMULANT TESTS

    SciTech Connect

    Zamecnik, J; Patricia Toole, P; David Best, D; Timothy Jones, T; Donald02 Miller, D; Whitney Thomas, W; Vickie Williams, V

    2008-03-05

    The Department of Energy Office of Environmental Management is supporting R&D for the conceptual design of the Plutonium Disposition Project at the Savannah River Site in Aiken, SC to reduce the attractiveness of plutonium scrap by fabricating a durable plutonium oxide glass form and immobilizing this form within the high-level waste glass prepared in the Defense Waste Processing Facility. A glass formulation was developed that is capable of incorporating large amounts of actinides as well as accommodating many impurities that may be associated with impure Pu feed streams. The basis for the glass formulation was derived from commercial glasses that had high lanthanide loadings. A development effort led to a Lanthanide BoroSilicate (LaBS) glass that accommodated significant quantities of actinides, tolerated impurities associated with the actinide feed streams and could be processed using established melter technologies. A Cylindrical Induction Melter (CIM) was used for vitrification of the Pu LaBS glass. Induction melting for the immobilization of americium and curium (Am/Cm) in a glass matrix was first demonstrated in 1997. The induction melting system was developed to vitrify a non-radioactive Am/Cm simulant combined with a glass frit. Most of the development of the melter itself was completed as part of that work. This same melter system used for Am/Cm was used for the current work. The CIM system used consisted of a 5 inch (12.7 cm) diameter inductively heated platinum-rhodium (Pt-Rh) containment vessel with a control system and offgas characterization. Scrap plutonium can contain numerous impurities including significant amounts of chlorides, fluorides, sodium, potassium, lead, gallium, chromium, and nickel. Smaller amounts of additional elements can also be present. The amount of chlorides present is unusually high for a melter feed. In commercial applications there is no reason to have chloride at such high concentrations. Because the melter operates at 1400

  19. The influence of wave energy and sediment transport on seagrass distribution

    USGS Publications Warehouse

    Stevens, Andrew W.; Lacy, Jessica R.

    2012-01-01

    A coupled hydrodynamic and sediment transport model (Delft3D) was used to simulate the water levels, waves, and currents associated with a seagrass (Zostera marina) landscape along a 4-km stretch of coast in Puget Sound, WA, USA. A hydroacoustic survey of seagrass percent cover and nearshore bathymetry was conducted, and sediment grain size was sampled at 53 locations. Wave energy is a primary factor controlling seagrass distribution at the site, accounting for 73% of the variability in seagrass minimum depth and 86% of the variability in percent cover along the shallow, sandy portions of the coast. A combination of numerical simulations and a conceptual model of the effect of sea-level rise on the cross-shore distribution of seagrass indicates that the area of seagrass habitat may initially increase and that wave dynamics are an important factor to consider in predicting the effect of sea-level rise on seagrass distributions in wave-exposed areas.

  20. Incompressible Navier-Stokes computation of the NREL airfoils using a symmetric total variational diminishing scheme

    SciTech Connect

    Yang, S.L.; Chang, Y.L.; Arici, O. . Mechanics Dept.)

    1994-11-01

    The purpose of this paper is to present a numerical study of flow fields for the NREL S805 and S809 airfoils using a spatially second-order symmetric total variational diminishing scheme. The steady two-dimensional flow is modeled as turbulent, viscous, and incompressible and is formulated in the pseudo-compressible form. The turbulent flow is closed by the Baldwind-Lomax algebraic turbulence model. Numerical solutions are obtained by the implicit approximate-factorization method. Numerical solutions are obtained by the implicit approximate-factorization method. The accuracy of the numerical results is compared with the Delft two-dimensional wind tunnel test data. For comparison, the Eppler code results are also included. Numerical solutions of pressure and life coefficients show good agreement with the experimental data, but not the drag coefficients. To properly simulate the post-stall flow field, a better turbulence model should be used.

  1. Centrifuge modeling of LNAPL transport in partially saturated sand

    SciTech Connect

    Esposito, G.; Allersma, H.G.B.; Selvadurai, A.P.S.

    1999-12-01

    Model tests were performed at the Geotechnical Centrifuge Facility of Delft University of Technology, The Netherlands, to examine the mechanics of light nonaqueous phase liquid (LNAPL) movement in a partially saturated porous granular medium. The experiment simulated a 2D spill of LNAPL in an unsaturated sand prepared at two values of porosity. The duration of the centrifuge model tests corresponded to a prototype equivalent of 110 days. The choice of modeling a 2D flow together with the use of a transparent container enabled direct visual observation of the experiments. Scaling laws developed in connection with other centrifuge modeling studies were used to support the test results. Tests were conducted at two different centrifuge accelerations to verify, by means of the modeling of models technique, the similitude between the different experiments. The paper presents details of the experimental methodologies and the measuring techniques used to evaluate the final distribution of water and LNAPL content in the soils.

  2. The influence of uncouplers on facilitated diffusion of sorbose in Saccharomyces cerevisiae.

    PubMed

    Van den Broek, P J; Haasnoot, C J; Van Leeuwen, C C; Van Steveninck, J

    1982-08-12

    Sorbose uptake in Saccharomyces cerevisiae, strain Delft 1, proceeds via mediated passive transport. In the cell sorbose is distributed in at least two compartments. Efflux studies showed that sorbose uptake in one of these compartments is not readily reversible. Uncouplers of oxidative phosphorylation inhibit both transport velocity and steady-state uptake level. It could be shown that these two effects are caused by different modes of action of the uncouplers. None of these two effects could be ascribed to changes of the electrochemical H+ gradient or of the intracellular pH. It is suggested that the inhibition of uptake velocity is caused by binding of the uncoupler to the sorbose translocator, thus lowering the transport activity. The uncoupler binding site is probably located at the intracellular fragment of the carrier. The second effect, reduction of the steady-state uptake level, is probably due to blocking of sorbose influx into the compartment that exhibits poor reversibility. PMID:6751390

  3. Relationship between gas exchange, wind speed, and radar backscatter in a large wind-wave tank

    NASA Technical Reports Server (NTRS)

    Wanninkhof, Richard H.; Bliven, L. F.

    1991-01-01

    The relationships between the gas exchange, wind speed, friction velocity, and radar backscatter from the water surface was investigated using data obtained in a large water tank in the Delft (Netherlands) wind-wave tunnel, filled with water supersaturated with SF6, N2O, and CH4. Results indicate that the gas-transfer velocities of these substances were related to the wind speed with a power law dependence. Microwave backscatter from water surface was found to be related to gas transfer velocities by a relationship in the form k(gas) = a 10 exp (b A0), where k is the gas transfer velocity for the particular gas, the values of a and b are obtained from a least squares fit of the average backscatter cross section and gas transfer at 80 m, and A0 is the directional (azimuthal) averaged return.

  4. A resume of the advances in theoretical aeronautics made by Max M. Munk

    NASA Technical Reports Server (NTRS)

    Ames, Joseph S

    1926-01-01

    In order to apply profitably the mathematical methods of hydrodynamics to aeronautical problems, it is necessary to make simplifications in the physical conditions of the latter. To begin with, it is allowable in many problems, as Prandtl has so successfully shown, to treat the air as having constant density and as free of viscosity. But this is not sufficient. It is also necessary to specify certain shapes for the solid bodies whose motion through the air is discussed, shapes suggested by the actual solids - airships or airfoils - it is true, but so chosen that they lead to solvable problems. In a valuable paper presented by Dr. Max M. Munk, of the National Advisory Committee for Aeronautics, Washington, to the Delft Conference in April, 1924, these necessary simplifying assumptions are discussed in detail. It is the purpose of the present paper to present in as simple a manner as possible some of the interesting results obtained by Dr. Munk's methods.

  5. ExoFly: a flapping wing aerobot for planetary survey and exploration

    NASA Astrophysics Data System (ADS)

    Zegers, T. E.; Mulder, J. A.; Remes, B.; Berkouwer, W.; Peeters, B.; Lentink, D.; Passchier, C.

    2008-09-01

    ExoFly is a light-weight (20 to 200 g.) flappingwing robotic fly, capable of exploration and scientific observations of the surface and lower atmosphere of planets. It is only in the last years that flapping wing insect flight is fully understood, and the step to robotic flapping-wing concept is very recent [1,2,3]. The concept of ExoFly is based on the DelFly, which has successfully been developed in the last years by the Technical University Delft, Wageningen University and TNO. Flapping winged flight is well suited to the low density and highly viscous Martian atmosphere, but may also be used in a denser atmosphere such as Titan. In any planetary mission, ExoFly would be a highly innovative mission element, technically part of the mission infrastructure, but enabling scientific breakthrough observations with the imaging system and micro-payload.

  6. A New Open-Source Tool For Education of SAR Interferometry: ADORE-DORIS

    NASA Astrophysics Data System (ADS)

    Osmanoglu, B.

    2012-12-01

    Delft Object-oRiented Interferometry Software (DORIS) is an open source and actively developed package empowering students and scientists from all over the world with means to carry out high quality synthetic aperture radar (SAR) interferometry. Automated DORIS Environment (ADORE) attempts to automate the processing steps involved in generating interferograms using DORIS. Synthetic aperture radar interferometry (InSAR) is an imported tool for earth scientists in a wide spectrum of applications. The complexity involved with the generation of interferograms from synthetic aperture radar (SAR) data limits InSAR's wide-use by scientists, and it's education in undergraduate classes. ADORE attempts to soften the learning curve for generating interferograms using DORIS. In this presentation the founding idea and practical benefits of ADORE is outlined and main processing steps are highlighted using an example data set.

  7. Dense network of disdrometers in an urban environment

    NASA Astrophysics Data System (ADS)

    de Jong, S. A. P.; Hut, R. W.; Bagree, R.; van de Giesen, N. C.

    2012-04-01

    Dense networks of rain gauges in urban areas are scarce. The standard recommendation for the placement of a rain gauge is that the gauge is positioned at a distance corresponding to two to four times the height of any nearby obstruction to obtain a measurement that is representative for the surrounding area. In an urban area it is almost impossible to find a location that suits this recommendation. Rain measurements with a high spatial resolution are needed in urban areas to obtain a better understanding of urban hydrology. However, the costs of such a network may be prohibitive. In recent years a low-cost disdrometer (below 200,-) has been developed at Delft University of Technology. On the campus of the University, a dense network of these disdrometers is under construction. We will show the layout of the network, its boundary conditions and the first results.

  8. Modeling of Fracture Propagation in Concrete Structures Using a Constitutive Relation with Embedded Discontinuity

    NASA Astrophysics Data System (ADS)

    Pietruszczak, Stanisław; Haghighat, Ehsan

    2015-02-01

    In this paper, the problem of modeling of mixed mode cracking in concrete structures is addressed within the context of a constitutive law with embedded discontinuity (CLED). This approach, which was originally developed for describing the propagation of localized deformation in a "smeared" sense, is enhanced here to model a discrete nature of crack propagation. The latter is achieved by coupling the CLED approach with the level-set method, which is commonly used within the framework of Extended Finite Element (XFEM). Numerical simulations of experimental tests conducted at Delft University, which involve four-point bending of a notched concrete beam under the action of two independent actuators, are presented. The results based on enhanced CLED approach are directly compared with XFEM simulations. The predictions from both these methodologies are quite consistent with the experimental data, thereby giving advantage to CLED scheme in view of its simplicity in the numerical implementation.

  9. Methods for defect characterisation in thin film materials by depth-selective 2D-ACAR

    NASA Astrophysics Data System (ADS)

    Eijt, S. W. H.; Falub, C. V.; van Veen, A.; Schut, H.; Mijnarends, P. E.

    2002-06-01

    The advent of intense positron beams makes it possible to perform depth-selective 2D-ACAR (two-dimensional angular correlation of annihilation radiation) studies. The Delft POSH-ACAR setup employs a strong permanent magnet for focusing of the POSH beam on the sample, which leads to a ˜15% spread in implantation energy. The effects of this spread on positron depth-profiling data are discussed, and are shown to be consistent with Doppler experiments on Si(1 0 0) with a subsurface layer of nanocavities. A method is presented to decompose depth-selective 2D-ACAR spectra reliably into their various (layer) components. This is used to reveal strong positron trapping in the nanocavities in Si(1 0 0).

  10. Study of colloidal quantum dot surfaces using an innovative thin-film positron 2D-ACAR method

    NASA Astrophysics Data System (ADS)

    Barbiellini, B.; Bansil, A.; Eijt, S. W. H.; Schut, H.; Mijnarends, P. E.; Denison, A. B.

    2006-03-01

    Despite a wealth of information, many fundamental questions regarding the nature of the surface of nanosized inorganic particles and its relationship with the electronic structure remain unsolved. We have investigated the electron momentum density (EMD) of colloidal CdSe quantum-dots via depth-resolved positron 2D angular correlation of annihilation (2D-ACAR) spectroscopy at the Delft intense variable-energy positron beam. This method, in combination with first-principles calculations of the EMD, shows that implanted positrons are trapped at the surface of CdSe nanocrystals. They annihilate mostly with the Se electrons and monitor changes in composition and structure of the surface while hardly sensing the ligand molecules. We thus unambiguously confirm [1] the strong surface relaxation predicted by first-principles calculations [2]. Work supported by the USDOE.[1] S.W.H. Eijt et al., Nature Materials (in press).[2] A. Puzder, et al., Phys. Rev. Lett. 92, 217401 (2004).

  11. CFD calculations of S809 aerodynamic characteristics

    SciTech Connect

    Wolfe, W.P.; Ochs, S.S.

    1997-01-01

    Steady-state, two-dimensional CFD calculations were made for the S809 laminar-flow, wind-turbine airfoil using the commercial code CFD-ACE. Comparisons of the computed pressure and aerodynamic coefficients were made with wind tunnel data from the Delft University 1.8 m x 1.25 m low-turbulence wind tunnel. This work highlights two areas in CFD that require further investigation and development in order to enable accurate numerical simulations of flow about current generation wind-turbine airfoils: transition prediction and turbulence modeling. The results show that the laminar-to-turbulent transition point must be modeled correctly to get accurate simulations for attached flow. Calculations also show that the standard turbulence model used in most commercial CFD codes, the k-{epsilon} model, is not appropriate at angles of attack with flow separation.

  12. A numerical model investigation of the formation and persistence of an erosion hotspot

    USGS Publications Warehouse

    Hansen, Jeff E.; Elias, Edwin; List, Jeffrey H.; Barnard, Patrick L.

    2011-01-01

    A Delft3D-SWAN coupled flow and wave model was constructed for the San Francisco Bight with high-resolution at 7 km-long Ocean Beach, a high-energy beach located immediately south of the Golden Gate, the sole entrance to San Francisco Bay. The model was used to investigate tidal and wave-induced flows, basic forcing terms, and potential sediment transport in an area in the southern portion of Ocean Beach that has eroded significantly over the last several decades. The model predicted flow patterns that were favorable for sediment removal from the area and net erosion from the surf-zone. Analysis of the forcing terms driving surf-zone flows revealed that wave refraction over an exposed wastewater outfall pipe between the 12 and 15 m isobaths introduces a perturbation in the wave field that results in erosion-causing flows. Modeled erosion agreed well with five years of topographic survey data from the area.

  13. Quantifying the signature of sediment composition on the topologic and dynamic complexity of river delta channel networks and inferences toward delta classification

    NASA Astrophysics Data System (ADS)

    Tejedor, Alejandro; Longjas, Anthony; Caldwell, Rebecca; Edmonds, Douglas A.; Zaliapin, Ilya; Foufoula-Georgiou, Efi

    2016-04-01

    Deltas contain complex self-organizing channel networks that nourish the surface with sediment and nutrients. Developing a quantitative understanding of how controlling physical mechanisms of delta formation relate to the channel networks they imprint on the landscape remains an open problem, hindering further progress on quantitative delta classification and understanding process from form. Here we isolate the effect of sediment composition on network structure by analyzing Delft3D river-dominated deltas within the recently introduced graph-theoretic framework for quantifying complexity of delta channel networks. We demonstrate that deltas with coarser incoming sediment tend to be more complex topologically (increased number of pathways) but simpler dynamically (reduced flux exchange between subnetworks) and that once a morphodynamic steady state is reached, complexity also achieves a steady state. By positioning simulated deltas on the so-called TopoDynamic complexity space and comparing with field deltas, we propose a quantitative framework for exploring complexity toward systematic inference and classification.

  14. Does littoral sand bypass the head of Mugu Submarine Canyon? - a modeling study

    USGS Publications Warehouse

    Xu, Jingping; Elias, Edwin; Kinsman, Nicole

    2011-01-01

    A newly developed sand-tracer code for the process-based model Delft3D (Deltares, The Netherlands) was used to simulate the littoral transport near the head of the Mugu Submarine Canyon in California, USA. For westerly swells, which account for more than 90% of the wave conditions in the region, the sand tracers in the downcoast littoral drift were unable to bypass the canyon head. A flow convergence near the upcoast rim of the canyon intercepts the tracers and moves them either offshore onto the shelf just west of the canyon rim (low wave height conditions) or into the canyon head (storm wave conditions). This finding supports the notion that Mugu Canyon is the true terminus of the Santa Barbara Littoral Cell.

  15. Sensing Human Activity: GPS Tracking

    PubMed Central

    van der Spek, Stefan; van Schaick, Jeroen; de Bois, Peter; de Haan, Remco

    2009-01-01

    The enhancement of GPS technology enables the use of GPS devices not only as navigation and orientation tools, but also as instruments used to capture travelled routes: as sensors that measure activity on a city scale or the regional scale. TU Delft developed a process and database architecture for collecting data on pedestrian movement in three European city centres, Norwich, Rouen and Koblenz, and in another experiment for collecting activity data of 13 families in Almere (The Netherlands) for one week. The question posed in this paper is: what is the value of GPS as ‘sensor technology’ measuring activities of people? The conclusion is that GPS offers a widely useable instrument to collect invaluable spatial-temporal data on different scales and in different settings adding new layers of knowledge to urban studies, but the use of GPS-technology and deployment of GPS-devices still offers significant challenges for future research. PMID:22574061

  16. Modelling biological phosphorus removal from a cheese factory effluent by an SBR.

    PubMed

    Ky, R C; Comeau, Y; Perrier, M; Takacs, I

    2001-01-01

    A mathematical model, named A3DX, based on ASM3(A3) for C and N removal, on the bio-P metabolic model of the Technological University of Delft (D), and on extra processes (X) for chemical and biological phosphorus removal, was developed and used to simulate the treatment of a fermented cheese factory effluent by a sequencing batch reactor (SBR). Experimental data obtained from a pilot-scale SBR were used to calibrate the model. The model calibration was performed by changing a minimal number (four) of default values for parameters, and by introducing a Monod function to account for magnesium limitation. This study suggests that the value of stoichiometric and kinetic model parameters determined with municipal effluents or enriched bio-P cultures can be reasonably used with some agro-industrial effluents with minimal parameter adjustment for calibration. PMID:11381914

  17. Chenier plain development: feedbacks between waves, mud and sand

    NASA Astrophysics Data System (ADS)

    Nardin, W.; Fagherazzi, S.

    2015-12-01

    Cheniers are sandy ridges parallel to the coast established by high energy waves. Here we discuss Chenier plains ontogeny through dimensional analysis and numerical results from the morphodynamic model Delft3D-SWAN. Our results show that wave energy and shelf slope play an important role in the formation of Chenier plains. In our numerical experiments waves affect Chenier plain development in three ways: by winnowing sediment from the mudflat, by eroding mud and accumulating sand over the beach during extreme wave events. We further show that different sediment characteristics and wave climates can lead to three alternative coastal landscapes: strand plains, mudflats, or the more complex Chenier plains. Low inner-shelf slopes are the most favorable for strand plain and Chenier plain formation, while high slopes decrease the likelihood of mudflat development and preservation.

  18. Wind tunnel experiments to prove a hydraulic passive torque control concept for variable speed wind turbines

    NASA Astrophysics Data System (ADS)

    Diepeveen, N. F. B.; Jarquin-Laguna, A.

    2014-12-01

    In this paper the results are presented of experiments to prove an innovative concept for passive torque control of variable speed wind turbines using fluid power technology. It is demonstrated that by correctly configuring the hydraulic drive train, the wind turbine rotor operates at or near maximum aerodynamic efficiency for below rated wind speeds. The experiments with a small horizontal-axis wind turbine rotor, coupled to a hydraulic circuit, were conducted at the Open Jet Facility of the Delft University of Technology. In theory, the placement of a nozzle at the end of the hydraulic circuit causes the pressure and hence the rotor torque to increase quadratically with flow speed and hence rotation speed. The rotor torque is limited by a pressure relief valve. Results from the experiments proved the functionality of this passive speed control concept. By selecting the correct nozzle outlet area the rotor operates at or near the optimum tip speed ratio.

  19. Model scenarios of shoreline change at Kaanapali Beach, Maui, Hawaii: seasonal and extreme events

    USGS Publications Warehouse

    Vitousek, Sean; Fletcher, Charles H.; Merrifield, Mark A.; Pawlak, Geno; Storlazzi, Curt D.

    2007-01-01

    Kaanapali beach is a well-defined littoral cell of carbonate sand extending 2 km south from Black Rock (a basalt headland) to Hanakao'o Point. The beach experiences dynamic seasonal shoreline change forced by longshore transport from two dominant swell regimes. In summer, south swells (Hs = 1–2 m Tp = 14–25 s) drive sand to the north, while in winter, north swells (Hs = 5–8 m Tp = 14–20 s) drive sand to the south where it accumulates on a submerged fossil reef. The Delft3D modeling system accurately predicts directly observed tidal currents and wave heights around West Maui, and is applied to simulate shoreline change. Morphologic simulations qualitatively resolve the observed seasonal behavior.

  20. Model scenerios of shoreline change at kaanapali beach, maui, hawaii: Seasonal and extreme events

    USGS Publications Warehouse

    Vitousek, S.; Fletcher, C.H.; Merrifield, M.A.; Pawlak, G.; Storlazzi, C.D.

    2007-01-01

    Kaanapali beach is a well-defined littoral cell of carbonate sand extending 2 km south from Black Rock (a basalt headland) to Hanakao'o Point. The beach experiences dynamic seasonal shoreline change forced by longshore transport from two dominant swell regimes. In summer, south swells (Hs=1-2mT p=14-25s) drive sand to the north, while in winter, north swells (Hs=5-8mTp=14-20s) drive sand to the south where it accumulates on a submerged fossil reef. The Delft3D modeling system accurately predicts directly observed tidal currents and wave heights around West Maui, and is applied to simulate shoreline change. Morphologic simulations qualitatively resolve the observed seasonal behavior.

  1. Wind tunnel tests of a free yawing downwind wind turbine

    NASA Astrophysics Data System (ADS)

    Verelst, D. R. S.; Larsen, T. J.; van Wingerden, J. W.

    2014-12-01

    This research paper presents preliminary results on a behavioural study of a free yawing downwind wind turbine. A series of wind tunnel tests was performed at the TU Delft Open Jet Facility with a three bladed downwind wind turbine and a rotor radius of 0.8 meters. The setup includes an off the shelf three bladed hub, nacelle and generator on which relatively flexible blades are mounted. The tower support structure has free yawing capabilities provided at the base. A short overview on the technical details of the experiment is given as well as a brief summary of the design process. The discussed test cases show that the turbine is stable while operating in free yawing conditions. Further, the effect of the tower shadow passage on the blade flapwise strain measurement is evaluated. Finally, data from the experiment is compared with preliminary simulations using DTU Wind Energy's aeroelastic simulation program HAWC2.

  2. Molecular Dynamic Simulations of Interaction of an AFM Probe with the Surface of an SCN Sample

    NASA Technical Reports Server (NTRS)

    Bune, Adris; Kaukler, William; Rose, M. Franklin (Technical Monitor)

    2001-01-01

    Molecular dynamic (MD) simulations is conducted in order to estimate forces of probe-substrate interaction in the Atomic Force Microscope (AFM). First a review of available molecular dynamic techniques is given. Implementation of MD simulation is based on an object-oriented code developed at the University of Delft. Modeling of the sample material - succinonitrile (SCN) - is based on the Lennard-Jones potentials. For the polystyrene probe an atomic interaction potential is used. Due to object-oriented structure of the code modification of an atomic interaction potential is straight forward. Calculation of melting temperature is used for validation of the code and of the interaction potentials. Various fitting parameters of the probe-substrate interaction potentials are considered, as potentials fitted to certain properties and temperature ranges may not be reliable for the others. This research provides theoretical foundation for an interpretation of actual measurements of an interaction forces using AFM.

  3. Teaching nanoscience across scientific and geographical borders A European Master programme in nanoscience and nanotechnology

    NASA Astrophysics Data System (ADS)

    Chesneau, A.; Groeseneken, G.; Heremans, P.; Rep, D.; Rudquist, P.; Schwille, P.; Sluijter, B.; Wendin, G.

    2008-03-01

    Within the Erasmus Mundus Master (EMM) Programme, five European Universities (KU Leuven, Belgium, Chalmers University of Technology, Sweden, Delft University of Technology and Leiden University, the Netherlands, and the University of Dresden, Germany) have joined forces to offer a unique master programme in Nanoscience and Nanotechnology, 'EMM-nano', at the cutting edge of state-of-the-art research. The students design and build their individual area of specialisation within nanophysics, nanotechnology, biophysics, biotechnology through their choice of trajectory between the partners. We discuss some of the challenges related to the crossdisciplinary nature of the field, educational activities in cleanrooms, and issues related to the integration of teaching programmes across the borders within Europe.

  4. A low-computational-cost inverse heat transfer technique for convective heat transfer measurements in hypersonic flows

    NASA Astrophysics Data System (ADS)

    Avallone, F.; Greco, C. S.; Schrijer, F. F. J.; Cardone, G.

    2015-04-01

    The measurement of the convective wall heat flux in hypersonic flows may be particularly challenging in the presence of high-temperature gradients and when using high-thermal-conductivity materials. In this case, the solution of multidimensional problems is necessary, but it considerably increases the computational cost. In this paper, a low-computational-cost inverse data reduction technique is presented. It uses a recursive least-squares approach in combination with the trust-region-reflective algorithm as optimization procedure. The computational cost is reduced by performing the discrete Fourier transform on the discrete convective heat flux function and by identifying the most relevant coefficients as objects of the optimization algorithm. In the paper, the technique is validated by means of both synthetic data, built in order to reproduce physical conditions, and experimental data, carried out in the Hypersonic Test Facility Delft at Mach 7.5 on two wind tunnel models having different thermal properties.

  5. A Multi-Functional Particle Spectrometer to be Demonstrated on Delfi-C3 Successor Nano Satellite

    NASA Astrophysics Data System (ADS)

    Lampridis, D.; Maddox, E.; Moon, S.; Kraft, S.; Elstak, J.; Rotteveel, J.

    2008-08-01

    In this article, a highly miniaturised Multi-functional Particle Spectrometer (MPS) is proposed for the monitoring of the space environment. The spectrometer separates protons, electrons, ions and gamma-rays, which affect systems differently, over a large energy range (0.1- 400 MeV). The proposed base line design consists of a combination of a solid state pixel tracker and a scintillation detector. Instrument control and data processing are performed with state-of-the-art electronics. Apart from its original focus in planetary exploration missions, the MPS has also been proposed and accepted to be demonstrated on the Delft University Delfi-C3 successor satellite (Delfi-n3Xt) in 2010. We present the design, mission goals and accommodation constraints on such a small satellite.

  6. Design and experimental results for the S814 airfoil

    SciTech Connect

    Somers, D.M.

    1997-01-01

    A 24-percent-thick airfoil, the S814, for the root region of a horizontal-axis wind-turbine blade has been designed and analyzed theoretically and verified experimentally in the low-turbulence wind tunnel of the Delft University of Technology Low Speed Laboratory, The Netherlands. The two primary objectives of high maximum lift, insensitive to roughness, and low profile drag have been achieved. The constraints on the pitching moment and the airfoil thickness have been satisfied. Comparisons of the theoretical and experimental results show good agreement with the exception of maximum lift which is overpredicted. Comparisons with other airfoils illustrate the higher maximum lift and the lower profile drag of the S814 airfoil, thus confirming the achievement of the objectives.

  7. Hydrodynamic and Salinity Intrusion Model in Selangor River Estuary

    NASA Astrophysics Data System (ADS)

    Haron, N. F.; Tahir, W.

    2016-07-01

    A multi-dimensional hydrodynamic and transport model has been used to develop the hydrodynamic and salinity intrusion model for Selangor River Estuary. Delft3D-FLOW was applied to the study area using a curvilinear, boundary fitted grid. External boundary forces included ocean water level, salinity, and stream flow. The hydrodynamic and salinity transport used for the simulation was calibrated and confirmed using data on November 2005 and from May to June 2014. A 13-day period for November 2005 data and a 6-day period of May to June 2014 data were chosen as the calibration and confirmation period because of the availability of data from the field-monitoring program conducted. From the calibration results, it shows that the model was well suited to predict the hydrodynamic and salinity intrusion characteristics of the study area.

  8. [Discovery of blood cells in the 17th century].

    PubMed

    Doubek, M

    2001-07-01

    Landmark works of the 17th century concerning observations of blood cells are quoted in the article. "Simple" and successively "compound" microscopes made their appearance in the late 16th century and early 17th century. In 1656, Frenchman Pierre Borel, physician-in-ordinary to the King Louis XIV, who first applied the microscope to medicine described a type of "worn" found in human blood. In 1657, Athanasius Kircher, a Jesuit priest and scientist from Germany, examined blood from plague victims, and described "worms" of plague. In 1661, 1664 and 1665, the blood cells were discerned by Marcello Malpighi. In 1678, the red blood corpuscles was described by Jan Swammerdam of Amsterdam, a Dutch naturalist and physician. The first complete account of the red cells was made by Anthony van Leeuwenhoek of Delft in the last quarter of the 17th century. PMID:11505724

  9. PU IMMOBILIZATION - INDUCTION MELTING ND OFFGAS TESTING

    SciTech Connect

    Marra, J

    2006-11-28

    The Cylindrical Induction Melter (CIM) at the Aiken County Technology Laboratory (ACTL) has been operated by the Savannah River National Laboratory (SRNL) to support the Pu Disposition Conceptual Design (CD-0) development effort. The primary purpose of this report is to summarize the offgas sampling tests conducted in the CIM to capture and analyze the particulate and vapors emitted from lanthanide borosilicate (LaBS) Frit X with HfO{sub 2} as a surrogate for PuO{sub 2} and added impurities. In addition, this report describes several initial tests of the CIM for the vitrification of LaBS Frit X with HfO{sub 2}. The activities required to produce Frit X from batch chemical oxides for subsequent milling to yield glass frit of nominally 20 micron particle size are also discussed. The tests with impurities added showed that alkali salts such as NaCl and KCl were substantially emitted into the offgas system as the salt particulate, HCl, or Cl{sub 2}. Retention of Na and K in the glass were about 80 and 55%, respectively. Chloride retention was about 35%; chloride remaining in the glass was 0.29-0.37 wt%. Based on a material balance, approximately 83% of F fed was retained in the glass at about 0.09 wt % (F could not be measured directly at this concentration). Transition metals (Ni, Cu, Fe, Mo, Cr) were also volatilized to varying extents. A very small amount (<0.1 g) of nickel compounds and KCl were found in crystals deposited on the melter offgas line. Overall, about 58-72% of the impurities added were volatilized. Virtually all of the particulate species were collected on the nominal 0.3 {micro}m filter. The particulate evolution rate ranged from 2-8 g/kg glass/h. The particulate was found to be as small as 0.2 {micro}m and have an approximate median size of 0.5 {micro}m. The particulate salt was also found to stick together by forming bridges between particles. Further runs without washable salts are recommended. Measurements of particle size distribution for use in

  10. The Activation-Induced Assembly of an RNA/Protein Interactome Centered on the Splicing Factor U2AF2 Regulates Gene Expression in Human CD4 T Cells

    PubMed Central

    Aarreberg, Lauren D.; Gao, Nina J.; Head, Steven R.; Ordoukhanian, Phillip; Williamson, Jamie R.; Salomon, Daniel R.

    2015-01-01

    Activation of CD4 T cells is a reaction to challenges such as microbial pathogens, cancer and toxins that defines adaptive immune responses. The roles of T cell receptor crosslinking, intracellular signaling, and transcription factor activation are well described, but the importance of post-transcriptional regulation by RNA-binding proteins (RBPs) has not been considered in depth. We describe a new model expanding and activating primary human CD4 T cells and applied this to characterizing activation-induced assembly of splicing factors centered on U2AF2. We immunoprecipitated U2AF2 to identify what mRNA transcripts were bound as a function of activation by TCR crosslinking and costimulation. In parallel, mass spectrometry revealed the proteins incorporated into the U2AF2-centered RNA/protein interactome. Molecules that retained interaction with the U2AF2 complex after RNAse treatment were designated as “central” interactome members (CIMs). Mass spectrometry also identified a second class of activation-induced proteins, “peripheral” interactome members (PIMs), that bound to the same transcripts but were not in physical association with U2AF2 or its partners. siRNA knockdown of two CIMs and two PIMs caused changes in activation marker expression, cytokine secretion, and gene expression that were unique to each protein and mapped to pathways associated with key aspects of T cell activation. While knocking down the PIM, SYNCRIP, impacts a limited but immunologically important set of U2AF2-bound transcripts, knockdown of U2AF1 significantly impairs assembly of the majority of protein and mRNA components in the activation-induced interactome. These results demonstrated that CIMs and PIMs, either directly or indirectly through RNA, assembled into activation-induced U2AF2 complexes and play roles in post-transcriptional regulation of genes related to cytokine secretion. These data suggest an additional layer of regulation mediated by the activation-induced assembly

  11. The human Vps29 retromer component is a metallo-phosphoesterase for a cation-independent mannose 6-phosphate receptor substrate peptide

    PubMed Central

    Damen, Ester; Krieger, Elmar; Nielsen, Jens E.; Eygensteyn, Jelle; Van Leeuwen, Jeroen E. M.

    2006-01-01

    The retromer complex is involved in the retrograde transport of the CI-M6PR (cation-independent mannose 6-phosphate receptor) from endosomes to the Golgi. It is a hetero-trimeric complex composed of Vps26 (vacuolar sorting protein 26), Vps29 and Vps35 proteins, which are conserved in eukaryote evolution. Recently, elucidation of the crystal structure of Vps29 revealed that Vps29 contains a metallo-phosphoesterase fold [Wang, Guo, Liang, Fan, Zhu, Zang, Zhu, Li, Teng, Niu et al. (2005) J. Biol. Chem. 280, 22962–22967; Collins, Skinner, Watson, Seaman and Owen (2005) Nat. Struct. Mol. Biol. 12, 594–602]. We demonstrate that recombinant hVps29 (human Vps29) displays in vitro phosphatase activity towards a serine-phosphorylated peptide, containing the acidic-cluster dileucine motif of the cytoplasmatic tail of the CI-M6PR. Efficient dephosphorylation required the additional presence of recombinant hVps26 and hVps35 proteins, which interact with hVps29. Phosphatase activity of hVps29 was greatly decreased by alanine substitutions of active-site residues that are predicted to co-ordinate metal ions. Using inductively coupled plasma MS, we demonstrate that recombinant hVps29 binds zinc. Moreover, hVps29-dependent phosphatase activity is greatly reduced by non-specific and zinc-specific metal ion chelators, which can be completely restored by addition of excess ZnCl2. The binuclear Zn2+ centre and phosphate group were modelled into the hVps29 catalytic site and pKa calculations provided further insight into the molecular mechanisms of Vps29 phosphatase activity. We conclude that the retromer complex displays Vps29-dependent in vitro phosphatase activity towards a serinephosphorylated acidic-cluster dileucine motif that is involved in endosomal trafficking of the CI-M6PR. The potential significance of these findings with respect to regulation of transport of cycling trans-Golgi network proteins is discussed. PMID:16737443

  12. Online Measurements of Highly Oxidized Organics in the Gas and Particle phase during SOAS and SENEX

    NASA Astrophysics Data System (ADS)

    Lopez-Hilfiker, F.; Lee, B. H.; Mohr, C.; Ehn, M.; Rubach, F.; Mentel, T. F.; Kleist, E.; Thornton, J. A.

    2014-12-01

    We present measurements of a large suite of gas and particle phase organic compounds made with a Filter Inlet for Gas and AEROsol (FIGAERO) coupled to a high resolution time of flight chemical ionization mass spectrometer (HR-ToF-CIMS) developed at the University of Washington and with airborne HR-ToF-CIMS measurements. The FIGAERO instrument was deployed on the Jülich Plant Atmosphere Chamber to study α-pinene oxidation, and subsequently at the SMEAR II forest station in Hyytiälä, Finland and the SOAS ground site, in Brent Alabama. During the Southern Atmosphere Study, a gas-phase only version of the HR-ToF-CIMS was deployed on the NOAA WP-3 aircraft as part of SENEX. We focus here on highly oxygenated organic compounds derived from monoterpene oxidation detected both aloft during SENEX and at the ground-based site during SOAS. In both chamber and the atmosphere, many highly oxidized, low volatility compounds were observed in the gas and particles and many of the same compositions detected in the gas-phase were detected in the particles upon temperature programmed thermal desorption. The fraction of a given compound measured in the particle phase follows expected trends with elemental composition such as O/C ratios, but many compounds would not be well described by an absorptive partitioning model assuming unity activity coefficients. The detailed structure in the thermograms reveals a significant contribution from large molecular weight organics and/or oligomers in both chamber and ambient aerosol samples. Approximately 50% of the measured organics in the particle phase are associated with compounds having effective vapour pressures 4 or more orders of magnitude lower than commonly measured monoterpene oxidation products. We discuss the implications of these findings for measurements of gas-particle partitioning and for evaluating the contribution of monoterpene oxidation to organic aerosol formation and growth. We also use the aircraft measurements and a

  13. Persistent disparities in stratospheric water vapor measurements drive large uncertainties in the radiative forcing by lower stratospheric water vapor

    NASA Astrophysics Data System (ADS)

    Hurst, D. F.; Rosenlof, K. H.; Portmann, R. W.; Voemel, H.; Schiller, C.; Smith, J. B.; Thornberry, T. D.; Rollins, A. W.; Hall, E.; Jordan, A.; Oltmans, S. J.

    2011-12-01

    Lower stratospheric water vapor is a powerful attenuator of outgoing long wave radiation, hence its strong influence on the Earth's radiation budget. The radiative forcing by lower stratospheric water vapor is, however, quite uncertain because of significant disparities in lower stratospheric water vapor measurements by different instruments. Specifically, measurement discrepancies of 0.5 to 2 ppmv H2O (15 to 60%) between several well-established aircraft- and balloon-borne instruments have now persisted for almost two decades. The Mid-latitude Airborne Cirrus Properties Experiment (MACPEX) in April 2011 provided not only a fresh opportunity to reexamine and reevaluate these persistent measurement discrepancies, but also to compare water vapor measurements by additional aircraft-based instrumentation. Here we compare the in situ measurements of lower stratospheric water vapor by five different instruments during MACPEX. Three of these instruments (Harvard water, FISH, and NOAA CIMS) were aboard the NASA WB-57 aircraft, while two (CFH and NOAA FPH) were launched on balloons. Substantial efforts were made to coordinate aircraft and balloon measurements in space and time, such that the aircraft would reach maximum altitude en route to the balloon rendezvous point, then both aircraft and balloon would descend together. Lower stratospheric water vapor measurements during MACPEX generally fall into two groups: CFH, NOAA FPH and FISH are in good agreement, while Harvard water and NOAA CIMS agree with each other but are significantly different than the other group. Differences between the two groups range from 0.5 to 1.0 ppmv (15 to 30%), with Harvard and NOAA CIMS mixing ratios consistently higher. Though these differences seem relatively large, they are smaller than some previously observed differences between the FPH/CFH and Harvard water. For example, Harvard stratospheric water vapor measurements during the 1993 CEPEX and 2006 CR-AVE campaigns were 1.5 and 2 ppmv

  14. Measurements of HNO3 and N2O5 using Ion drift - Chemical Ionization Mass Spectrometry during the MCMA - 2006 Campaign

    NASA Astrophysics Data System (ADS)

    Zheng, J.; Zhang, R.; Fortner, E. C.; Molina, L.; Aiken, A. C.; Jimenez, J. L.; Gäggeler, K.; Dommen, J.; Dusanter, S.; Stevens, P. S.; Tie, X.

    2008-03-01

    An ion drift - chemical ionization mass spectrometry (ID-CIMS) was deployed in Mexico City between 5 and 31 March to measure HNO3 and N2O5 during the 2006 Mexico City Metropolitan Area (MCMA) field campaign. The observation site, T0, was located at the Instituto Mexicano del Petróleo at the center of the Mexico City Basin with major emissions of pollutants from both domestic and industrial sources. Diurnally, HNO3 was less than 200 parts per trillion (ppt) during the night and in the early morning, increased steadily from around 09:00 a.m. central standard time (CST), reached a peak value of 0.5 to 3 parts per billion (ppb) in the early afternoon, and declined sharply to less than half of the peak value near 05:00 p.m. CST. An inter-comparison between the ID-CIMS and an ion chromatograph/mass spectrometer (ICMS) showed a good correlation in the HNO3 measurements (R2=0.75). The HNO3 mixing ratio was found to anti-correlate with aerosol nitrate, suggesting that the gaseous HNO3 concentration was controlled by the gas-particle partitioning process. During most times of the MCMA 2006 field campaign, N2O5 was found to be under the detection limit (about 20 ppt for a 10 s integration time) of the ID-CIMS, because of high NO mixing ratio (>100 ppb) during the night. With one exception on 26 March 2006, about 40 ppt N2O5 was observed during the late afternoon and early evening hours under a cloudy condition, before NO built up at the surface site. The results revealed that during the 2006 MCMA field campaign HNO3 was primarily produced by the reaction of OH with NO2 and regulated by gas/particle partitioning, and HNO3 production from N2O5 hydrolysis during the nighttime was small because of high NO and low O3 concentrations near the surface.

  15. A method for calculating 16O/18O peptide ion ratios for the relative quantification of proteomes.

    PubMed

    Johnson, Kenneth L; Muddiman, David C

    2004-04-01

    A method is described for the identification and relative quantification of proteomes using accurate mass tags (AMT) generated by nLC-dual ESI-FT-ICR-MS on a 7T instrument in conjunction with stable isotope labeling using 16O/18O ratios. AMTs were used for putative peptide identification, followed by confirmation of peptide identity by tandem mass spectrometry. For a combined set of 58 tryptic peptides from bovine serum albumin (BSA) and human transferrin, a mean mass measurement accuracy of 1.9 ppm +/-0.94 ppm (CIM99%) was obtained. This subset of tryptic peptides was used to measure 16O/18O ratios of 0.36 +/- 0.09 (CIM99%) for BSA (micro = 0.33) and 1.48 +/- 0.47 (CIM99%) for transferrin (micro = 1.0) using a method for calculating 16O/18O ratios from overlapping isotopic multiplets arising from mixtures of 16O, 18O1, and 18O2 labeled C-termini. The model amino acid averagine was used to calculate a representative molecular formula for estimating and subtracting the contributions of naturally occurring isotopes solely as a function of peptide molecular weight. The method was tested against simulated composite 16O/18O spectra where peptide molecular weight, 16O/18O ratio, 18O1/18O2 ratios, and number of sulfur atoms were varied. Relative errors of 20% or less were incurred when the 16O/18O ratios were less than three, even for peptides where the number of sulfur atoms was over- or under-estimated. These data demonstrate that for biomarker discovery, it is advantageous to label the proteome representing the disease state with 18O; and the method is not sensitive to variations in 18O1/18O2 ratio. This approach allows a comprehensive differentiation of expression levels and tentative identification via AMTs, followed by targeted analysis of over- and under-expressed peptides using tandem mass spectrometry, for applications such as the discovery of disease biomarkers. PMID:15047049

  16. Measurements of HNO3 and N2O5 using ion drift-chemical ionization mass spectrometry during the MILAGRO/MCMA-2006 campaign

    NASA Astrophysics Data System (ADS)

    Zheng, J.; Zhang, R.; Fortner, E. C.; Volkamer, R. M.; Molina, L.; Aiken, A. C.; Jimenez, J. L.; Gaeggeler, K.; Dommen, J.; Dusanter, S.; Stevens, P. S.; Tie, X.

    2008-11-01

    An ion drift-chemical ionization mass spectrometer (ID-CIMS) was deployed in Mexico City between 7 and 31 March to measure gas-phase nitric acid (HNO3) and dinitrogen pentoxide (N2O5 during the Mexico City Metropolitan Area (MCMA)-2006 field campaign. The observation site was located at the Instituto Mexicano del Petróleo in the northern part of Mexico City urban area with major emissions of pollutants from residential, vehicular and industrial sources. Diurnally, HNO3 was less than 200 parts per trillion (ppt) during the night and early morning. The concentration of HNO3 increased steadily from around 09:00 a.m. central standard time (CST), reached a peak value of 0.5 to 3 parts per billion (ppb) in the early afternoon, and then declined sharply to less than half of the peak value near 05:00 p.m. CST. An inter-comparison between the ID-CIMS and an ion chromatograph/mass spectrometer (ICMS) showed a good agreement between the two HNO3 measurements (R2=0.75). The HNO3 mixing ratio was found to anti-correlate with submicron-sized aerosol nitrate, suggesting that the gas-particle partitioning process was a major factor in determining the gaseous HNO3 concentration. Losses by irreversible reactions with mineral dust and via dry deposition also could be important at this site. Most of the times during the MCMA 2006 field campaign, N2O5 was found to be below the detection limit (about 30 ppt for a 10 s integration time) of the ID-CIMS, because of high NO mixing ratio at the surface (>100 ppb) during the night. An exception occurred on 26 March 2006, when about 40 ppt N2O5 was observed during the late afternoon and early evening hours under cloudy conditions before the build-up of NO at the surface site. The results revealed that during the MCMA-2006 field campaign HNO3 was primarily produced from the reaction of OH with NO2 and regulated by gas/particle transfer and dry deposition. The production of HNO3 from N2O5 hydrolysis during the nighttime was small because of

  17. PS-InSAR processing methodologies in the detection of field surface deformation—Study of the Granada basin (Central Betic Cordilleras, southern Spain)

    NASA Astrophysics Data System (ADS)

    Sousa, Joaquim J.; Ruiz, Antonio M.; Hanssen, Ramon F.; Bastos, Luisa; Gil, Antonio J.; Galindo-Zaldívar, Jesús; Sanz de Galdeano, Carlos

    2010-04-01

    Differential SAR interferometry (DInSAR) is a very effective technique for measuring crustal deformation. However, almost all interferograms include large areas where the signals decorrelate and no measurements are possible. Persistent scatterer interferometry (PS-InSAR) overcomes the decorrelation problem by identifying resolution elements whose echo is dominated by a single scatterer in a series of interferograms. Two time series of 29 ERS-1/2 and 22 ENVISAT ASAR acquisitions of the Granada basin, located in the central sector of the Betic Cordillera (southern Spain), covering the period from 1992 to 2005, were analyzed. Rough topography of the study area associated to its moderate activity geodynamic setting, including faults and folds in an uplifting relief by the oblique Eurasian-African plate convergence, poses a challenge for the application of interferometric techniques. The expected tectonic deformation rates are in the order of ˜1 mm/yr, which are at the feasibility limit of current InSAR techniques. In order to evaluate whether, under these conditions, InSAR techniques can still be used to monitor deformations we have applied and compared two PS-InSAR approaches: DePSI, the PS-InSAR package developed at Delft University of Technology (TU Delft) and StaMPS (Stanford Method for Persistent Scatterers) developed at Stanford University. Ground motion processes have been identified for the first time in the study area, the most significant process being a subsidence bowl located at the village of Otura. The idea behind this comparative study is to analyze which of the two PS-InSAR approaches considered might be more appropriate for the study of specific areas/environments and to attempt to evaluate the potentialities and benefits that could be derived for the integration of those methodologies.

  18. The effect of tidal exchange on residence time in a coastal embayment

    NASA Astrophysics Data System (ADS)

    Rynne, Patrick; Reniers, Ad; van de Kreeke, Jacobus; MacMahan, Jamie

    2016-04-01

    Numerical simulations of an idealized lagoon that is connected to the ocean via a tidal inlet show that the mean residence time is inversely proportional to tidal exchange. In the Delft3D model the tidal exchange is controlled by varying the inlet length, width and depth. These changes in the inlet geometry affect the tidal prism and the ebb/flood flow structure, which are shown to control the exchange of lagoon water with seawater. To map residence time within the lagoon, a new method that implements dye tracer is developed and shows that the tidally averaged residence time exhibits significant spatial variability. For inlet systems in which, as a first approximation, the lagoon can be described by a uniformly fluctuating water level, a simple transport model is developed to elucidate the specific processes that control tidal exchange and their effect on residence time. In this transport model tidal exchange is decomposed into two fractions, an ocean exchange fraction and a lagoon exchange fraction. It is shown that both fractions need to be included to better describe tidal exchange. Specifically, inclusion of a lagoon exchange fraction improves previous tidal prism models that assume complete mixing in the lagoon. The assumption of complete mixing results in an under-prediction of residence time. Relating the spatially averaged residence time results to the exchange fractions for each inlet geometry show that the residence time is inversely proportional to the product of the tidal exchange fractions. For these single inlet systems, Keulegan's 0-D hydrodynamic model shows good agreement with Delft3D in predicting the tidal prism, maximum flow velocity, and exchange fractions. With these parameters, estimates of the mean residence time can be reached through a relationship derived from the simple transport model.

  19. Model Predictive Control application for real time operation of controlled structures for the Water Authority Noorderzijlvest, The Netherlands

    NASA Astrophysics Data System (ADS)

    van Heeringen, Klaas-Jan; Gooijer, Jan; Knot, Floris; Talsma, Jan

    2015-04-01

    In the Netherlands, flood protection has always been a key issue to protect settlements against storm surges and riverine floods. Whereas flood protection traditionally focused on structural measures, nowadays the availability of meteorological and hydrological forecasts enable the application of more advanced real-time control techniques for operating the existing hydraulic infrastructure in an anticipatory and more efficient way. Model Predictive Control (MPC) is a powerful technique to derive optimal control variables with the help of model based predictions evaluated against a control objective. In a project for the regional water authority Noorderzijlvest in the north of the Netherlands, it has been shown that MPC can increase the safety level of the system during flood events by an anticipatory pre-release of water. Furthermore, energy costs of pumps can be reduced by making tactical use of the water storage and shifting pump activities during normal operating conditions to off-peak hours. In this way cheap energy is used in combination of gravity flow through gates during low tide periods. MPC has now been implemented for daily operational use of the whole water system of the water authority Noorderzijlvest. The system developed to a real time decision support system which not only supports the daily operation but is able to directly implement the optimal control settings at the structures. We explain how we set-up and calibrated a prediction model (RTC-Tools) that is accurate and fast enough for optimization purposes, and how we integrated it in the operational flood early warning system (Delft-FEWS). Beside the prediction model, the weights and the factors of the objective function are an important element of MPC, since they shape the control objective. We developed special features in Delft-FEWS to allow the operators to adjust the objective function in order to meet changing requirements and to evaluate different control strategies.

  20. Development of the Coastal Storm Modeling System (CoSMoS) for predicting the impact of storms on high-energy, active-margin coasts

    USGS Publications Warehouse

    Barnard, Patrick; Maarten van Ormondt; Erikson, Li H.; Jodi Eshleman; Hapke, Cheryl J.; Peter Ruggiero; Peter Adams; Foxgrover, Amy

    2014-01-01

    The Coastal Storm Modeling System (CoSMoS) applies a predominantly deterministic framework to make detailed predictions (meter scale) of storm-induced coastal flooding, erosion, and cliff failures over large geographic scales (100s of kilometers). CoSMoS was developed for hindcast studies, operational applications (i.e., nowcasts and multiday forecasts), and future climate scenarios (i.e., sea-level rise + storms) to provide emergency responders and coastal planners with critical storm hazards information that may be used to increase public safety, mitigate physical damages, and more effectively manage and allocate resources within complex coastal settings. The prototype system, developed for the California coast, uses the global WAVEWATCH III wave model, the TOPEX/Poseidon satellite altimetry-based global tide model, and atmospheric-forcing data from either the US National Weather Service (operational mode) or Global Climate Models (future climate mode), to determine regional wave and water-level boundary conditions. These physical processes are dynamically downscaled using a series of nested Delft3D-WAVE (SWAN) and Delft3D-FLOW (FLOW) models and linked at the coast to tightly spaced XBeach (eXtreme Beach) cross-shore profile models and a Bayesian probabilistic cliff failure model. Hindcast testing demonstrates that, despite uncertainties in preexisting beach morphology over the ~500 km alongshore extent of the pilot study area, CoSMoS effectively identifies discrete sections of the coast (100s of meters) that are vulnerable to coastal hazards under a range of current and future oceanographic forcing conditions, and is therefore an effective tool for operational and future climate scenario planning.

  1. Uncertainty Analysis and Parameter Estimation For Nearshore Hydrodynamic Models

    NASA Astrophysics Data System (ADS)

    Ardani, S.; Kaihatu, J. M.

    2012-12-01

    Numerical models represent deterministic approaches used for the relevant physical processes in the nearshore. Complexity of the physics of the model and uncertainty involved in the model inputs compel us to apply a stochastic approach to analyze the robustness of the model. The Bayesian inverse problem is one powerful way to estimate the important input model parameters (determined by apriori sensitivity analysis) and can be used for uncertainty analysis of the outputs. Bayesian techniques can be used to find the range of most probable parameters based on the probability of the observed data and the residual errors. In this study, the effect of input data involving lateral (Neumann) boundary conditions, bathymetry and off-shore wave conditions on nearshore numerical models are considered. Monte Carlo simulation is applied to a deterministic numerical model (the Delft3D modeling suite for coupled waves and flow) for the resulting uncertainty analysis of the outputs (wave height, flow velocity, mean sea level and etc.). Uncertainty analysis of outputs is performed by random sampling from the input probability distribution functions and running the model as required until convergence to the consistent results is achieved. The case study used in this analysis is the Duck94 experiment, which was conducted at the U.S. Army Field Research Facility at Duck, North Carolina, USA in the fall of 1994. The joint probability of model parameters relevant for the Duck94 experiments will be found using the Bayesian approach. We will further show that, by using Bayesian techniques to estimate the optimized model parameters as inputs and applying them for uncertainty analysis, we can obtain more consistent results than using the prior information for input data which means that the variation of the uncertain parameter will be decreased and the probability of the observed data will improve as well. Keywords: Monte Carlo Simulation, Delft3D, uncertainty analysis, Bayesian techniques

  2. Deimos Methane-Oxygen Rocket Engine Test Results

    NASA Astrophysics Data System (ADS)

    Engelen, S.; Souverein, L. J.; Twigt, D. J.

    This paper presents the results of the first DEIMOS Liquid Methane/Oxygen rocket engine test campaign. DEIMOS is an acronym for `Delft Experimental Methane Oxygen propulsion System'. It is a project performed by students under the auspices of DARE (Delft Aerospace Rocket Engineering). The engine provides a theoretical design thrust of 1800 N and specific impulse of 287 s at a chamber pressure of 40 bar with a total mass flow of 637 g/s. It has links to sustainable development, as the propellants used are one of the most promising so-called `green propellants'-combinations, currently under scrutiny by the industry, and the engine is designed to be reusable. This paper reports results from the provisional tests, which had the aim of verifying the engine's ability to fire, and confirming some of the design assumptions to give confidence for further engine designs. Measurements before and after the tests are used to determine first estimates on feed pressures, propellant mass flows and achieved thrust. These results were rather disappointing from a performance point of view, with an average thrust of a mere 3.8% of the design thrust, but nonetheless were very helpful. The reliability of ignition and stability of combustion are discussed as well. An initial assessment as to the reusability, the flexibility and the adaptability of the engine was made. The data provides insight into (methane/oxygen) engine designs, leading to new ideas for a subsequent design. The ultimate goal of this project is to have an operational rocket and to attempt to set an amateur altitude record.

  3. High resolution rainfall measurements around a high rise building

    NASA Astrophysics Data System (ADS)

    de Jong, Stijn; van de Giesen, Nick; Hut, Rolf

    2010-05-01

    A number of disdrometers (acoustic rain gauge) has been placed around a high rise building on a place where variation in spatial distribution of precipitation is expected, to show the advantage of high resolution rainfall measurements in a urban area. The standard recommendation for the placement of a rain gauge is that the gauge is positioned at a distance corresponding to two to four times the height of any nearby obstruction to obtain a measurement that is representative for the surrounding area. In an urban area it is almost impossible to find a location that suits this recommendation. Rain measurements in urban area with a high spatial resolution are desired, to obtain a better understanding of urban hydrology, but costs may be prohibitive. A low cost disdrometer has been developed to make it affordable to perform rain measurements with a very high spatial and temporal resolution. The disdrometer is tested around a high rise building on the Delft University of Technology campus. The faculty of Electrical Engineering, Mathematics and Computer Science (EWI) on the campus of Delft University of Technology consists of a high rise building of 90 meters and a low rise building of 15 meters. Sensors are placed on the low rise building to measure the impact of the high rise building on the spatial distribution of precipitation. In addition to the disdrometer, two other methods are used to measure precipitation differences around the high rise building. Tipping bucket rain gauges have been placed on two elevator shaft housings on the low rise building, of which one is situated in the shadow of the high rise building. Simultaneously, runoff from the elevator shafts is measured. A comparison of the different methods will be presented.

  4. Application of water footprint in a fertirrigated melon crop under semiarid conditions: A review.

    NASA Astrophysics Data System (ADS)

    Castellanos Serrano, María Teresa; Requejo Mariscal, María Isabel; Villena Gordo, Raquel; Cartagena Causapé, María Carmen; Arce Martínez, Augusto; Ribas Elcorobarrutia, Francisco; Jesús Cabello Cabello, María; María Tarquis Alfonso, Ana

    2015-04-01

    In recent times, there has been a major increase in the use of water and fertilizers in order to increase agricultural production, while at the same time there has increased evidence that aquifers are reducing their water level, enriched by nutrient and degraded as a result of pollution. So best management practices are needed for much of cropped, irrigated and fertirrigated land, to avoid contamination of fresh water and groundwater. The concept of "water footprint" (WF) was introduced as an indicator for the total volume of direct and indirect freshwater used, consumed and/or polluted [1]. The WF distinguishes between blue water (volume of surface and groundwater consumed), green water (rain-water consumed), and grey water (volume of freshwater that is required to assimilate the load of pollutants based on existing ambient water quality standards). This study is focused in calculating the crops WF using a real case of study in a fertirrigated melon crop under semiarid conditions which is principally cultivated in the centre of Spain declared vulnerable zone to nitrate pollution by applying the Directive 91/676/CEE. During successive years, a melon crop (Cucumis melo L.) was grown under field conditions applying mineral and organic fertilizers. Different doses of ammonium nitrate were used as well as compost derived from the wine-distillery industry which is relevant in this area. This application help us to review the different concepts in which is based WF. Acknowledgements: This project has been supported by INIA-RTA04-111-C3 and INIA-RTA2010-00110-C03-01. Keywords: Water footprint, nitrogen, fertirrigation, inorganic fertilizers, organic amendments, winery waste, semiarid conditions. [1] Hoekstra, A.Y. 2003. Virtual water trade. Proceedings of the International Expert Meeting on Virtual Water Trade, Delft, The Netherlands, 12-13 December 2002. Value of Water Research Report Series No. 12, UNESCO-IHE, Delft, The Netherlands.

  5. Using HPC within an operational forecasting configuration

    NASA Astrophysics Data System (ADS)

    Jagers, H. R. A.; Genseberger, M.; van den Broek, M. A. F. H.

    2012-04-01

    Various natural disasters are caused by high-intensity events, for example: extreme rainfall can in a short time cause major damage in river catchments, storms can cause havoc in coastal areas. To assist emergency response teams in operational decisions, it's important to have reliable information and predictions as soon as possible. This starts before the event by providing early warnings about imminent risks and estimated probabilities of possible scenarios. In the context of various applications worldwide, Deltares has developed an open and highly configurable forecasting and early warning system: Delft-FEWS. Finding the right balance between simulation time (and hence prediction lead time) and simulation accuracy and detail is challenging. Model resolution may be crucial to capture certain critical physical processes. Uncertainty in forcing conditions may require running large ensembles of models; data assimilation techniques may require additional ensembles and repeated simulations. The computational demand is steadily increasing and data streams become bigger. Using HPC resources is a logical step; in different settings Delft-FEWS has been configured to take advantage of distributed computational resources available to improve and accelerate the forecasting process (e.g. Montanari et al, 2006). We will illustrate the system by means of a couple of practical applications including the real-time dynamic forecasting of wind driven waves, flow of water, and wave overtopping at dikes of Lake IJssel and neighboring lakes in the center of The Netherlands. Montanari et al., 2006. Development of an ensemble flood forecasting system for the Po river basin, First MAP D-PHASE Scientific Meeting, 6-8 November 2006, Vienna, Austria.

  6. Global Storm Surge Forecasting and Information System

    NASA Astrophysics Data System (ADS)

    Buckman, Lorraine; Verlaan, Martin; Weerts, Albrecht

    2015-04-01

    The Global Storm Surge Forecasting and Information System is a first-of-its-kind operational forecasting system for storm surge prediction on a global scale, taking into account tidal and extra-tropical storm events in real time. The system, built and hosted by Deltares, provides predictions of water level and surge height up to 10 days in advance from numerical simulations and measurement data integrated within an operational IT environment. The Delft-FEWS software provides the operational environment in which wind forecasts and measurement data are collected and processed, and serves as a platform from which to run the numerical model. The global Delft3D model is built on a spherical, flexible mesh with a resolution around 5 km in near-shore coastal waters and an offshore resolution of 50 km to provide detailed information at the coast while limiting the computational time required. By using a spherical grid, the model requires no external boundary conditions. Numerical global wind forecasts are used as forcing for the model, with plans to incorporate regional meteorological forecasts to better capture smaller, tropical storms using the Wind Enhanced Scheme for generation of tropical winds (WES). The system will be automated to collect regional wind forecasts and storm warning bulletins which are incorporated directly into the model calculations. The forecasting system provides real-time water level and surge information in areas that currently lack local storm surge prediction capability. This information is critical for coastal communities in planning their flood strategy and during disaster response. The system is also designed to supply boundary conditions for coupling finer-scale regional models. The Global Storm Surge Forecasting and Information System is run within the Deltares iD-Lab initiative aiming at collaboration with universities, consultants and interested organizations. The results of the system will be made available via standards such as net

  7. Wave-driven tidal inlet migration: mechanics and effects on barrier morphology

    NASA Astrophysics Data System (ADS)

    Nienhuis, J.; Ashton, A. D.

    2015-12-01

    Littoral sediment transport on barrier island coasts can cause tidal inlets to migrate alongshore up to hundreds of meters per year and pose significant hazards and challenges to coastal communities, infrastructure, and ecosystems. Surprisingly little is known about either the mechanisms or the expected rates of tidal inlet migration. Here we propose and test a simple framework of inlet migration that allows us to investigate the movement of sediment around tidal inlets and predict the corresponding migration rates. We test this framework using a combination of observed migration rates and idealized inlet simulations from the coupled hydrodynamic and morphodynamic model Delft3D-SWAN. In the Delft3D experiments, the tidal inlets quickly reach a dynamic state where the inlet cross-sectional area, the tidal prism and the migration rate, all of which are emergent characteristics of the experiment, remain constant through time. Tracking the sources of sediments deposited around the tidal inlet, we find that the eroded downdrift barrier is a significant source of sediment to both the flood tidal delta and the newly constructed barrier updrift of the inlet. The alongshore sediment bypassing volumes and pathways affecting inlet migration depend strongly on wave and tidal conditions. Furthermore, we find that migrating flood tidal deltas can act as a net sink of up to 80% of the littoral sediment flux. This sink reduces alongshore sediment bypassing of tidal inlets and thins the barrier downdrift. These modeled tidal inlets can therefore act as a migrating "buzzsaw" across barrier coasts that leave a zone of flood tidal delta deposits in their wake, an efficacious sediment mover that contributes significantly to the long-term landward migration of barrier islands with or without sea level rise.

  8. Quantifying the Distribution and Influence of Non-Uniform Bed Properties on Spatial Patterns of Turbidity in Shallow Coastal Bays

    NASA Astrophysics Data System (ADS)

    Wiberg, P.; Carr, J. A.; Safak, I.; Anutaliya, A.

    2014-12-01

    Increases in turbidity in shallow coastal bays typically occur in response to resuspension of bed sediment driven by the interaction between wind-generated waves and the bay bottom. The mass and grain size of resuspended sediment at any location in a bay are strongly controlled by local bed properties. This suggests that spatial variations in bed properties, such as grain size, porosity and erodibility, should be reflected in spatial patterns of turbidity. Unfortunately, knowledge of bed properties in coastal bays is typically sparse at best. In this study we address two related questions: 1) how best to estimate the spatial distribution of bed properties in shallow coastal bays; and 2) how does the spatial distribution of bed properties affect the spatial pattern of wave-driven turbidity? We explored these questions using field observations and the Delft3D coastal hydrodynamic and sediment transport model for a system of shallow coastal bays on Virginia's Atlantic coast. This system comprises bays of varying geometry with similar wind and tidal forcing. We found a strong relationship between water residence time and measured grain size. We leveraged the relationships between residence time and grain size fractions to map the spatial distribution of grain size throughout the system based on a recent mapping of residence times for the Virginia coastal bays. This spatially varying map of grain size was used as the initial bed conditions for 2-month-long runs of Delft3D forced with measured wind and tides. The resulting patterns of suspended sediment concentration (SSC) and turbidity differ dramatically from those obtained from simulations with an initially spatially homogeneous bed, with high wave-driven SSC near the mainland in the non-uniform case but high SSC near the inlets for the uniform case. The pre- and post-simulation bed properties are compared to each other and with measured bed properties to investigate how close the residence-time generated bed is to

  9. Feedbacks Between Wave Energy And Declining Coral Reef Structure: Implications For Coastal Morphodynamics

    NASA Astrophysics Data System (ADS)

    Grady, A. E.; Jenkins, C. J.; Moore, L. J.; Potts, D. C.; Burgess, P. M.; Storlazzi, C. D.; Elias, E.; Reidenbach, M. A.

    2013-12-01

    The incident wave energy dissipated by the structural complexity and bottom roughness of coral reef ecosystems, and the carbonate sediment produced by framework-building corals, provide natural shoreline protection and nourishment, respectively. Globally, coral reef ecosystems are in decline as a result of ocean warming and acidification, which is exacerbated by chronic regional stressors such as pollution and disease. As a consequence of declining reef health, many reef ecosystems are experiencing reduced coral cover and shifts to dominance by macroalgae, resulting in a loss of rugosity and thus hydrodynamic roughness. As coral reef architecture is compromised and carbonate skeletons are eroded, wave energy dissipation and sediment transport patterns--along with the carbonate sediment budget of the coastal environment--may be altered. Using a Delft3D numerical model of the south-central Molokai, Hawaii, fringing reef, we simulate the effects of changing reef states on wave energy and sediment transport. To determine the temporally-varying effects of biotic and abiotic stressors such as storms and bleaching on the reef structure and carbonate production, we couple Delft3D with CarboLOT, a model that simulates growth and competition of carbonate-producing organisms. CarboLOT is driven by the Lotka-Volterra population ecology equations and niche suitability principles, and accesses the CarboKB database for region-specific, carbonate-producing species information on growth rates, reproduction patterns, habitat suitability, as well as organism geometries. Simulations assess how changing reef states--which alter carbonate sediment production and reef morphology and thus hydrodynamic roughness--impact wave attenuation and sediment transport gradients along reef-fronted beaches. Initial results suggest that along fringing reefs having characteristics similar to the Molokai fringing reef, projected sea level rise will likely outpace coral reef accretion, and the increased

  10. Effect of mineral and organic fertilization on grey water footprint in a fertirrigated crop under semiarid conditions.

    NASA Astrophysics Data System (ADS)

    Castellanos Serrano, María Teresa; Requejo Mariscal, María Isabel; Cartagena Causapé, María Carmen; Arce Martínez, Augusto; Ribas Elcorobarrutia, Francisco; Jesús Cabello Cabello, María; María Tarquis Alfonso, Ana

    2016-04-01

    The concept of "water footprint" (WF) was introduced as an indicator for the total volume of direct and indirect freshwater used, consumed and/or polluted [1]. The WF distinguishes between blue water (volume of surface and groundwater consumed), green water (rain-water consumed), and grey water (volume of freshwater that is required to assimilate the load of pollutants based on existing ambient water quality standards). In semiarid scenarios with low water quality, where the irrigation is necessary to maintain production, green WF is zero because the effective rainfall is negligible. As well as blue WF includes: i) extra consumption or irrigation water that the farmer has to apply to compensate the fail of uniformity on discharge of drips, ii) percolation out of control or salts leaching, which depends on the salt tolerance of the crop, soil and quality of irrigation water, to ensure the fruit yield. The major concern is grey WF, because the irrigation and nitrogen dose have to be adjusted to the crop needs in order to minimize nitrate pollution. This study is focused in assessment mineral and organic fertilization on grey WF in a fertirrigated melon crop under semiarid conditions, which is principally cultivated in the centre of Spain declared vulnerable zone to nitrate pollution by applying the Directive 91/676/CEE. During successive years, a melon crop (Cucumis melo L.) was grown under field conditions. Different doses of ammonium nitrate were used as well as compost derived from the wine-distillery industry which is relevant in this area. Acknowledgements: This project has been supported by INIA-RTA04-111-C3 and INIA-RTA2010-00110-C03. Keywords: Water footprint, nitrogen, fertirrigation, inorganic fertilizers, organic amendments, semiarid conditions. [1] Hoekstra, A.Y. 2003. Virtual water trade. Proceedings of the International Expert Meeting on Virtual Water Trade, Delft, The Netherlands, 12-13 December 2002. Value of Water Research Report Series No. 12

  11. Advanced Water Quality Modelling in Marine Systems: Application to the Wadden Sea, the Netherlands

    NASA Astrophysics Data System (ADS)

    Boon, J.; Smits, J. G.

    2006-12-01

    There is an increasing demand for knowledge and models that arise from water management in relation to water quality, sediment quality (ecology) and sediment accumulation (ecomorphology). Recently, models for sediment diagenesis and erosion developed or incorporated by Delft Hydraulics integrates the relevant physical, (bio)chemical and biological processes for the sediment-water exchange of substances. The aim of the diagenesis models is the prediction of both sediment quality and the return fluxes of substances such as nutrients and micropollutants to the overlying water. The resulting so-called DELWAQ-G model is a new, generic version of the water and sediment quality model of the DELFT3D framework. One set of generic water quality process formulations is used to calculate process rates in both water and sediment compartments. DELWAQ-G involves the explicit simulation of sediment layers in the water quality model with state-of-the-art process kinetics. The local conditions in a water layer or sediment layer such as the dissolved oxygen concentration determine if and how individual processes come to expression. New processes were added for sulphate, sulphide, methane and the distribution of the electron-acceptor demand over dissolved oxygen, nitrate, sulphate and carbon dioxide. DELWAQ-G also includes the dispersive and advective transport processes in the sediment and across the sediment-water interface. DELWAQ-G has been applied for the Wadden Sea. A very dynamic tidal and ecologically active estuary with a complex hydrodynamic behaviour located at the north of the Netherlands. The predicted profiles in the sediment reflect the typical interactions of diagenesis processes.

  12. Efficiently solving morphodynamics in complex geometies using a mass conservative immersed boundary method on a structured grid.

    NASA Astrophysics Data System (ADS)

    Canestrelli, A.; Jagers, B.; Spruyt, A.; Borsboom, M.; Slingerland, R. L.

    2014-12-01

    In this work we propose an efficient approach to solve morphodynamics in complex river geometries, with a particular emphasis for river deltas. We use a novel immersed boundary method of solution in Delft3D, an open source hydrodynamic model that employs a Cartesian structured grid. Our approach employs a hybrid cut-cell/ghost-cell method: ghost cells are used for the flow momentum equations in order to prescribe the correct boundary condition at the immersed boundary, while cut-cells are used in the continuity equation in order to conserve mass. The resulting scheme is robust, does not suffer any time step limitation for small cut cells and conserves fluid mass up to machine precision. The model has been coupled with the existing Delft3D morphodynamic module, adapted for the presence of immersed irregular boundaries cutting through the regular grid. A cut-cell technique is proposed for both the bed-load and suspended load components. The bed-load component, without any modification, turns out to trigger bed instability in small cut-cells, especially for high values of the morphodynamic factor. We therefore propose a simple "virtual merging technique" that guarantees stability even for very high values of the morphodynamic factor. A bank erosion module provides for lateral displacement of the immersed boundaries in proportion to excess bank shear stress. The model has been tested against different analytical and reference solutions. Moreover, morphodynamic simulations of river deltas show that deltas with various channel networks arise as a consequence of jet momentum and stability, and sediment size and geotechnical properties.

  13. Preface: phys. stat. sol. (a) 201/11

    NASA Astrophysics Data System (ADS)

    Bergonzo, Philippe; Haenen, Ken; Nebel, Christoph; Nesládek, Milo; Vanek, Milan

    2004-09-01

    The present issue of physica status solidi (a) contains a collection of 24 papers presented at the 9th International Workshop on Surface and Bulk Defects in CVD Diamond Films held in Diepen- beek-Hasselt, Belgium, 18-20 February 2004. The concept of this workshop originated in 1996 with the idea of bringing together scientists who are active and innovative in the field of electronic and optical properties of thin film diamond. Since then, this meeting have grown up to a regular conference devoted to new issues in CVD diamond research and related to diamond as a material for electronics and nanobioelectronics. This year the programme was spread over two and a half days, including 8 invited lectures from a total of 39 talks, and a poster session featuring 15 posters. In addition we were able to connect this meeting with a workshop on Defects and Impurities in Crystalline Boron Nitride Compounds, scientifically organized from the University of Antwerp and leading finally to a joint meeting lasting four days. The papers from the BN workshop are joining this proceeding issue on pages 2559-2598.At SBDD IX, topics ranged from homo- and heteroepitaxial growth, doping, hydrogen induced surface conductivity, defects and their characterization, to devices including bio-sensing applications. As usual, very intense and lively discussions took place among participants, from young students to established scientists, after talks, during breaks and in the evenings while enjoying the hospitality of the Limburgs Universitair Centrum and especially the city of Hasselt. The number of participants reached a record breaking 96 this year, with participants coming from fifteen different countries (Australia, Austria, Belgium, Czech Republic, France, Germany, Israel, Italy, Japan, Mexico, Romania, Russia, Sweden, UK, USA). This yearly increasing number indicates that this workshop is continuing to be very attractive to a large scientific community, as it summarizes the up-to-date research

  14. Implementing context information management in forensic casework: Minimizing contextual bias in firearms examination.

    PubMed

    Mattijssen, E J A T; Kerkhoff, W; Berger, C E H; Dror, I E; Stoel, R D

    2016-03-01

    Managing context information in forensic casework aims to minimize task-irrelevant information while maximizing the task-relevant information that reaches the examiner. A design and implementation of context information management (CIM) is described for forensic firearms examination. Guided by a taxonomy of different sources of context information, a flow-chart was constructed that specifies the process of casework examination and context information management. Due to the risk of bias, another examiner may need to be involved when context information management is unsuccessful. Application of context information management does not make a subjective examination objective, but can limit the risks of bias with a minimal investment of time and resources. PMID:26976470

  15. Integrated Digital Technologies for the Architectural Rehabilitation & Conservation of Beinn Bhreagh Hall & Surrounding Site, Nova Scotia, Canada

    NASA Astrophysics Data System (ADS)

    Percy, K.; Ward, S.; Santana Quintero, M.; Morrison, T.

    2015-08-01

    This contribution summarizes the collaboration between Carleton Immersive Media Studio (CIMS) and Heritage Standing in the use of digital technologies to document the Beinn Bhreagh Hall historic site (house and immediate surroundings) in Baddeck, Nova Scotia for its rehabilitation and protection. The project objectives were to develop a prototype for research and training using 3D scanning, and Building Information Modelling (BIM), as well as other emerging surveying tools to understand the state of conservation of Historic Places in Canada, providing relevant and appropriate information for their rehabilitation and maintenance. The vehicle of this research was the documentation and modelling of this important landmark, the summer home of Dr. Alexander Graham Bell in Victoria County, Nova Scotia. This unique 19thC building, currently under review for designated as a national historic site.

  16. Evidence of rapid production of organic acids in an urban air mass

    NASA Astrophysics Data System (ADS)

    Veres, Patrick R.; Roberts, James M.; Cochran, Anthony K.; Gilman, Jessica B.; Kuster, William C.; Holloway, John S.; Graus, Martin; Flynn, James; Lefer, Barry; Warneke, Carsten; de Gouw, Joost

    2011-09-01

    Gas-phase acids (nitric, formic, acrylic, methacrylic, propionic, and pyruvic/butryic acid) were measured using negative-ion proton-transfer chemical-ionization mass spectrometry (NI-PT-CIMS) in Pasadena, CA as part of the CalNex 2010 (Research at the Nexus of Air Quality and Climate Change) study in May-June 2010. Organic acid concentrations ranged from a few parts per trillion by volume (pptv) to several parts per billion by volume (ppbv), with the largest concentrations observed for formic and propionic acids. Photochemically processed urban emissions transported from Los Angeles were frequently sampled during the day. Analysis of transported emissions demonstrates a strong correlation of organic acid concentrations with both nitric acid and odd oxygen (Ox = O3 + NO2) showing that the organic acids are photochemically and rapidly produced from urban emissions.

  17. The ergonomics of computer aided design within advanced manufacturing technology.

    PubMed

    John, P A

    1988-03-01

    Many manufacturing companies have now awakened to the significance of computer aided design (CAD), although the majority of them have only been able to purchase computerised draughting systems of which only a subset produce direct manufacturing data. Such companies are moving steadily towards the concept of computer integrated manufacture (CIM), and this demands CAD to address more than draughting. CAD architects are thus having to rethink the basic specification of such systems, although they typically suffer from an insufficient understanding of the design task and have consequently been working with inadequate specifications. It is at this fundamental level that ergonomics has much to offer, making its contribution by encouraging user-centred design. The discussion considers the relationships between CAD and: the design task; the organisation and people; creativity; and artificial intelligence. It finishes with a summary of the contribution of ergonomics. PMID:15676646

  18. Controlling multisupplier operations by intelligent EDI

    NASA Astrophysics Data System (ADS)

    Eskelinen, Juha; Kovanen, Jyrki; Linna, Miika; Mononen, Tero; Sulonen, Reijo

    In modern CIM (Computer Integrated Manufacturing) environment, problems that can affect production should be discovered as soon as possible. This can be very difficult in multisupplier operations where problems outside one organization can remain undetected until they already have effects inside that organization. If Electronic Data Interchange (EDI) is used to control intercompany operations there is a better possibility to detect problems on logistic chain. Because these problems usually have some effects in the flow of EDI messages, they can be detected by controlling this flow. A Forget-Me-Not (FMN) system, which is a programmable message management system that can control the flow of EDI messages and detect exceptional situations is discussed.

  19. Digitally-Assisted Stone Carving of a Relief Sculpture for the Parliament Buildings National Historic Site of Canada

    NASA Astrophysics Data System (ADS)

    Hayes, J.; Fai, S.; Kretz, S.; Ouimet, C.; White, P.

    2015-08-01

    The emerging field of digital fabrication is a process where three-dimensional datasets can be directly transferred to fabrication equipment to create models or even 1:1 building elements. In this paper, we will discuss the results of a collaboration between the Carleton Immersive Media Studio (CIMS), the Dominion Sculptor of Canada, and the Heritage Conservation Directorate (HCD) of Public Works and Government Services Canada (PWGSC), that utilizes digital fabrication technologies in the development of a digitally-assisted stone carving process. The collaboration couples the distinguished skill of the Dominion Sculptor with the latest digital acquisition and digital fabrication technologies for the reconstruction of a deteriorated stone bas-relief on the façade of the East Block building of the Parliament Buildings National Historic Site of Canada. The intention of the research is to establish a workflow of hybrid digital/analogue methodologies from acquisition through rehabilitation and ultimately to the fabrication of stone elements.

  20. A Sensor Failure Simulator for Control System Reliability Studies

    NASA Technical Reports Server (NTRS)

    Melcher, K. J.; Delaat, J. C.; Merrill, W. C.; Oberle, L. G.; Sadler, G. G.; Schaefer, J. H.

    1986-01-01

    A real-time Sensor Failure Simulator (SFS) was designed and assembled for the Advanced Detection, Isolation, and Accommodation (ADIA) program. Various designs were considered. The design chosen features an IBM-PC/XT. The PC is used to drive analog circuitry for simulating sensor failures in real-time. A user defined scenario describes the failure simulation for each of the five incoming sensor signals. Capabilities exist for editing, saving, and retrieving the failure scenarios. The SFS has been tested closed-loop with the Controls Interface and Monitoring (CIM) unit, the ADIA control, and a real-time F100 hybrid simulation. From a productivity viewpoint, the menu driven user interface has proven to be efficient and easy to use. From a real-time viewpoint, the software controlling the simulation loop executes at greater than 100 cycles/sec.

  1. Reactive uptake of HOCl to laboratory generated sea salt particles and nascent sea-spray aerosol

    NASA Astrophysics Data System (ADS)

    Campbell, N. R.; Ryder, O. S.; Bertram, T. H.

    2013-12-01

    Field observations suggest that the reactive uptake of HOCl on marine aerosol particles is an important source of chlorine radicals, particularly under low NOx conditions. However to date, laboratory measurements disagree on the magnitude of the reactive uptake coefficient for HOCl by a factor of 5 (γ(HOCl) ranges between 0.0004 and 0.0018), and there are no measurements of γ(HOCl) on nascent sea-spray aerosol. Here, we present measurements of the reactive uptake of HOCl to laboratory generated sodium chloride and sea-spray aerosol particles generated in a novel Marine Aerosol Reference Tank (MART), coupled to an entrained aerosol flow reactor and Chemical Ionization Mass Spectrometer (CIMS). Measurements of γ(HOCl) retrieved here are compared against those in the literature, and the role of organic coatings on nascent sea-spray aerosol is explored.

  2. An efficient implementation of the full-CI method using an ( n-2)-electron projection space

    NASA Astrophysics Data System (ADS)

    Harrison, Robert J.; Zarrabian, Sohrab

    1989-06-01

    The determinant full-CI algorithm of Zarrabian, Sarma and Paldus (Chem. Phys. Letters 158 (1989) 183) has been implemented for efficient operation on parallel vector computers. For few electrons ( n) in many orbitals ( m) and nCI determinants, the floating point operation count is O ( nCIm2n2), dominated by matrix multiplication. Timings reported include 5.6×10 7 and 7.7×10 7 determinant calculations on oxygen and its anion in 5s4p3d2f1g and 4s3p2d1f+spd basis sets respectively. Consideration is given to exact manipulation of CI expansions much larger than those used here.

  3. The molecular path to in vitro shoot regeneration.

    PubMed

    Motte, Hans; Vereecke, Danny; Geelen, Danny; Werbrouck, Stefaan

    2014-01-01

    Plant regeneration through de novo shoot organogenesis in tissue culture is a critical step in most plant transformation and micropropagation procedures. Establishing an efficient regeneration protocol is an empirical process and requires optimization of multiple factors that influence the regeneration capacity. Here, we review the molecular process of shoot induction in a two-step regeneration protocol and focus on the role of auxins and cytokinins. First, during incubation on an auxin-rich callus induction medium (CIM), organogenic callus is produced that exhibits characteristics of a root meristem. Subsequent incubation on a cytokinin-rich shoot induction medium (SIM) induces root to shoot conversion. Through a detailed analysis of the different aspects of shoot regeneration, we try to reveal hinge points and novel candidate genes that may be targeted to increase shoot regeneration capacity in order to improve transformation protocols. PMID:24355763

  4. Preparation of pure, high titer, pseudoinfectious Flavivirus particles by hollow fiber tangential flow filtration and anion exchange chromatography.

    PubMed

    Mundle, Sophia T; Giel-Moloney, Maryann; Kleanthous, Harry; Pugachev, Konstantin V; Anderson, Stephen F

    2015-08-20

    Purification of enveloped viruses such as live flavivirus vaccine candidates poses a challenge as one must retain viral infectivity to preserve immunogenicity. Here we describe a laboratory-scale purification procedure for two replication defective (single-cycle) flavivirus variants for use in a pre-clinical setting. The two step purification scheme based on hollow fiber tangential flow filtration (TFF) followed by anion exchange chromatography using convective interaction media (CIM(®)) monoliths results in a ∼60% recovery of infectious virus titer and can be used to prepare nearly homogenous, highly purified vaccine viruses with titers as high as 1×10(9) focus forming units per mL. Flavivirus virions prepared by this method are 2 and 3 orders of magnitude more pure with respect to dsDNA and BHK host cell proteins, respectively, as compared to the raw feed stream. PMID:25498209

  5. Experimental characterization of the transport phenomena, adsorption, and elution in a protein A affinity monolithic medium.

    PubMed

    Herigstad, M Omon; Dimartino, Simone; Boi, Cristiana; Sarti, Giulio C

    2015-08-14

    A commercially available convective interaction media (CIM) Protein A monolithic column was fully characterized in view of its application for the affinity capture of IgG in monoclonal antibody production processes. By means of moment analysis, the interstitial porosity and axial dispersion coefficient were determined. The frontal analysis method of characteristic points was employed, for the first time with monolithic media, to determine the dynamic binding capacity. The effects of the flow rate and pH on the total recovery of polyclonal IgG and elution profile were evaluated. A comparison with literature data for Protein A chromatography beads demonstrate the superior bed utilization of monolithic media, which gave better performance at lower residence times. PMID:26143608

  6. Biosynthesis of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) from glucose with elevated 3-hydroxyvalerate fraction via combined citramalate and threonine pathway in Escherichia coli.

    PubMed

    Wang, Qian; Liu, Xiaolong; Qi, Qingsheng

    2014-05-01

    The biosynthesis of polyhydroxyalkanoate copolymers in Escherichia coli from unrelated carbon sources becomes attractive nowadays. We previously developed a poly(hydroxybutyrate-co-hydroxyvalerte) (PHBV) biosynthetic pathway from an unrelated carbon source via threonine metabolic route in E. coli (Chen et al., Appl Environ Microbiol 77:4886-4893, 2011). In our study, a citramalate pathway was introduced in recombinant E. coli by cloning a cimA gene from Leptospira interrogans. By blocking the pyruvate and the propionyl-CoA catabolism and replacing the β-ketothiolase gene, the PHBV with 11.5 mol% 3HV fraction was synthesized. Further, the combination of citramalate pathway with the threonine biosynthesis pathway improved the 3HV fraction in PHBV copolymer to 25.4 mol% in recombinant E. coli. PMID:24425304

  7. Aligning Business Motivations in a Services Computing Design

    NASA Astrophysics Data System (ADS)

    Roach, T.; Low, G.; D'Ambra, J.

    The difficulty in aligning business strategies with the design of enterprise systems has been recognised as a major inhibitor of successful IT initiatives. Service-oriented architecture (SOA) initiatives imply an entirely new approach to enterprise process enablement and require significant architectural redesign. Successful SOA deployments are highly dependent on the degree to which flexible support for evolving business strategies is embedded into their designs. This chapter addresses the challenge of modelling business strategies in support of SOA designs. The proposed framework is derived from conceptual elements introduced in the OMG business motivation model and delivers an architectural view for business stakeholders in a computational-independent model (CIM). This model represents the first of three layers that will define a complete reference architecture for a service-based computing model.

  8. Antifungal activity and isomerization of octadecyl p-coumarates from Ipomoea carnea subsp. fistulosa.

    PubMed

    Nidiry, Eugene Sebastian J; Ganeshan, Girija; Lokesha, Ankanahalli N

    2011-12-01

    Bioassay monitored HPLC assisted isolation and purification of the chief antifungal fraction of the leaves of Ipomoea carnea subsp. fistulosa (Convulvulaceae) were achieved using Colletotrichum gloeosporioides and Cladosporium cucumerinum as test organisms. The activity of the purified fraction was further confirmed by the dose dependent inhibition of the spore germination of Alternaria alternata and A. porri. The active fraction was identified as a mixture of (E)-octadecyl p-coumarate and (Z)-octadecyl p-coumarate. The two isomers were detected on an HPLC column with substantially different retention times, but once eluted from the column, one form was partly converted to the other in daylight. Conclusive evidence for the structures and their isomerization were obtained from the HPLC behavior, IR, UV, HRESIMS, CIMS and and NMR spectral data. Important 1H NMR and 13C NMR signals could be separately assigned for the isomers using 2D NMR techniques. PMID:22312731

  9. Ion chemistry of VX surrogates and ion energetics properties of VX: new suggestions for VX chemical ionization mass spectrometry detection.

    PubMed

    Midey, Anthony J; Miller, Thomas M; Viggiano, A A; Bera, Narayan C; Maeda, Satoshi; Morokuma, Keiji

    2010-05-01

    Room temperature rate constants and product ion branching ratios have been measured for the reactions of numerous positive and negative ions with VX chemical warfare agent surrogates representing the amine (triethylamine) and organophosphonate (diethyl methythiomethylphosphonate (DEMTMP)) portions of VX. The measurements have been supplemented by theoretical calculations of the proton affinity, fluoride affinity, and ionization potential of VX and the simulants. The results show that many proton transfer reactions are rapid and that the proton affinity of VX is near the top of the scale. Many proton transfer agents should detect VX selectively and sensitively in chemical ionization mass spectrometers. Charge transfer with NO(+) should also be sensitive and selective since the ionization potential of VX is small. The surrogate studies confirm these trends. Limits of detection for commercial and research grade CIMS instruments are estimated at 80 pptv and 5 ppqv, respectively. PMID:20384284

  10. Sex-specific quantitative trait loci govern susceptibility to Theiler's murine encephalomyelitis virus-induced demyelination.

    PubMed Central

    Butterfield, Russell J; Roper, Randall J; Rhein, Dominic M; Melvold, Roger W; Haynes, Lia; Ma, Runlin Z; Doerge, R W; Teuscher, Cory

    2003-01-01

    Susceptibility to Theiler's murine encephalomyelitis virus-induced demyelination (TMEVD), a mouse model for multiple sclerosis (MS), is genetically controlled. Through a mouse-human comparative mapping approach, identification of candidate susceptibility loci for MS based on the location of TMEVD susceptibility loci may be possible. Composite interval mapping (CIM) identified quantitative trait loci (QTL) controlling TMEVD severity in male and female backcross populations derived from susceptible DBA/2J and resistant BALBc/ByJ mice. We report QTL on chromosomes 1, 5, 15, and 16 affecting male mice. In addition, we identified two QTL in female mice located on chromosome 1. Our results support the existence of three linked sex-specific QTL on chromosome 1 with opposing effects on the severity of the clinical signs of TMEV-induced disease in male and female mice. PMID:12663542

  11. Rapid Intelligent Inspection Process Definition for dimensional measurement in advanced manufacturing

    SciTech Connect

    Brown, C.W.

    1993-03-01

    The Rapid Intelligent Inspection Process Definition (RIIPD) project is an industry-led effort to advance computer integrated manufacturing (CIM) systems for the creation and modification of inspection process definitions. The RIIPD project will define, design, develop, and demonstrate an automated tool (i.e., software) to generate inspection process plans and coordinate measuring machine (CMM) inspection programs, as well as produce support information for the dimensional measurement of piece parts. The goal of this project is to make the inspection and part verification function, specifically CMM measurements, a more effective production support tool by reducing inspection process definition flowtime, creating consistent and standard inspections, increasing confidence of measurement results, and capturing inspection expertise. This objective is accomplished through importing STEP geometry definitions, applying solid modeling, incorporating explicit tolerance representations, establishing dimensional inspection,techniques, embedding artificial intelligence techniques, and adhering to the Dimensional Measuring Interface Standard (DMIS) national standard.

  12. Uncertainty management by relaxation of conflicting constraints in production process scheduling

    NASA Technical Reports Server (NTRS)

    Dorn, Juergen; Slany, Wolfgang; Stary, Christian

    1992-01-01

    Mathematical-analytical methods as used in Operations Research approaches are often insufficient for scheduling problems. This is due to three reasons: the combinatorial complexity of the search space, conflicting objectives for production optimization, and the uncertainty in the production process. Knowledge-based techniques, especially approximate reasoning and constraint relaxation, are promising ways to overcome these problems. A case study from an industrial CIM environment, namely high-grade steel production, is presented to demonstrate how knowledge-based scheduling with the desired capabilities could work. By using fuzzy set theory, the applied knowledge representation technique covers the uncertainty inherent in the problem domain. Based on this knowledge representation, a classification of jobs according to their importance is defined which is then used for the straightforward generation of a schedule. A control strategy which comprises organizational, spatial, temporal, and chemical constraints is introduced. The strategy supports the dynamic relaxation of conflicting constraints in order to improve tentative schedules.

  13. Strongly Acidic Auxin Indole-3-Methanesulfonic Acid

    PubMed Central

    Cohen, Jerry D.; Baldi, Bruce G.; Bialek, Krystyna

    1985-01-01

    A radiochemical synthesis is described for [14C]indole-3-methanesulfonic acid (IMS), a strongly acidic auxin analog. Techniques were developed for fractionation and purification of IMS using normal and reverse phase chromatography. In addition, the utility of both Fourier transform infrared spectrometry and fast atom bombardment mass spectrometry for analysis of IMS has been demonstrated. IMS was shown to be an active auxin, stimulating soybean hypocotyl elongation, bean first internode curvature, and ethylene production. IMS uptake by thin sections of soybean hypocotyl was essentially independent of solution pH and, when applied at a 100 micromolar concentration, IMS exhibited a basipetal polarity in its transport in both corn coleoptile and soybean hypocotyl sections. [14C]IMS should, therefore, be a useful compound to study fundamental processes related to the movement of auxins in plant tissues and organelles. PMID:16664007

  14. Cycle isolation monitoring

    SciTech Connect

    Svensen, L.M. III; Zeigler, J.R.; Todd, F.D.; Alder, G.C.

    2009-07-15

    There are many factors to monitor in power plants, but one that is frequently overlooked is cycle isolation. Often this is an area where plant personnel can find 'low hanging fruit' with great return on investment, especially high energy valve leakage. This type of leakage leads to increased heat rate, potential valve damage and lost generation. The fundamental question to ask is 'What is 100 Btu/kW-hr of heat rate worth to your plant? On a 600 MW coal-fired power plant, a 1% leakage can lead to an 81 Btu/kW-hr impact on the main steam cycle and a 64 Btu/kW-hr impact on the hot reheat cycle. The article gives advice on methods to assist in detecting leaking valves and to monitor cycle isolation. A software product, TP. Plus-CIM was designed to estimate flow rates of potentially leaking valves.

  15. Improvement in the yield and quality of kalmegh (Andrographis paniculata Nees) under the sustainable production system.

    PubMed

    Verma, Rajesh Kumar; Verma, Sanjeet K; Pankaj, Umesh; Gupta, Anand K; Khan, Khushboo; Shankar, Karuna

    2015-02-01

    Andrographis paniculata Nees is an annual erect herb with wide medicinal and pharmacological applications due to the presence of andrographolide and other active chemical constituents. The large-scale cultivation of the kalmegh is not in practice. The aim of this study was to establish sustainable production systems of A. paniculata cv CIM-Megha with the application of different bioinoculants and chemical fertilisers. A. paniculata herb and andrographolide yield in the dried leaves was found to be highest (218% and 61.3%, respectively) in treatment T3 (NPK+Bacillus sp.) compared with T1 (control). The soil organic carbon, soil microbial respiration, soil enzymes activity and available nutrients improved significantly with combined application of bioinoculants and chemical fertilisers. PMID:25348874

  16. Control chart pattern recognition using a back propagation neural network

    NASA Astrophysics Data System (ADS)

    Spoerre, Julie K.; Perry, Marcus B.

    2000-10-01

    In this paper, control chart pattern recognition using artificial neural networks is presented. An important motivation of this research is the growing interest in intelligent manufacturing systems, specifically in the area of Statistical Process Control (SPC). On-line automated process analysis is an important area of research since it allows the interfacing of process control with Computer Integrated Manufacturing (CIM) techniques. A back propagation artificial neural network is used to model X-bar quality control charts and identify process instability situations as specified by the Western Electric Statistical Quality Control handbook. Results indicate that the performance of the back propagation neural network is very accurate in identifying these control chart patterns. This work is significant in that the neural network output can serve as a link to process parameters in a closed-loop control system. In this way, adjustments to the process can be made on-line and quality problems averted.

  17. Recording Earthen Architecture at the Peruvian Andes: the Case of KUÑO Tambo CHURCH'S Historic Wall Paintings

    NASA Astrophysics Data System (ADS)

    Percy, K.; Hanley, C.; Santana Quintero, M.; Fai, S.; Ouimet, C.; Cancino, C.; Rainer, L.; Villacorta-Santamato, L.

    2013-07-01

    According to UNESCO "Earthen architecture is one of the most original and powerful expressions of our ability to create a built environment with readily available resources. It includes a great variety of structures, ranging from mosques, palaces and granaries, to historic city centres, cultural landscapes and archaeological sites" (WHEAP, 2007). This contribution looks at developing effective methods for recording earthen historic structures for their rehabilitation and preservation using the Kuño Tambo church in Peru, which is a Peruvian national historic site that requires serious rehabilitation work, as a case study. This project describes the compilation of an effective metric record of the "state-of-conservation" - "as found" of wall paintings in this important and remote building using a toolbox of different "off-the-shelf" heritage recording techniques. This approach was applied by Carleton Immersive Media Studio (CIMS), as part of the Earthen Architecture Initiative of the Getty Conservation Institute (GCI).

  18. Quantifying Stratospheric Ozone in the Upper Troposphere Using in situ Measurements of HCl

    SciTech Connect

    Atherton, C S; Bergmann, D J; Marcy, T P; Fahey, D W; Gao, R S; Popp, P J; Richard, E C; Thompson, T L; Rosenlof, K H; Ray, E A; Salawitch, R J; Ridley, B A; . Weinheimer, A J; Loewenstein, M; Weinstock, E M; Mahoney, M J

    2004-03-08

    A chemical ionization mass spectrometry (CIMS) technique has been developed for precise in situ measurements of hydrochloric acid (HCl) from a high-altitude aircraft. In measurements at subtropical latitudes, minimum HCl values found in the upper troposphere (UT) are often near or below the 0.005-ppbv detection limit of the measurements, indicating that background HCl values are much lower than a global mean estimate. However, significant abundances of HCl were observed in many UT air parcels as a result of stratosphere-to-troposphere transport events. A method for diagnosing the amount of stratospheric ozone in these UT parcels was developed using the compact linear correlation of HCl with ozone found throughout the lower stratosphere (LS). Expanded use of this method will lead to improved quantification of cross-tropopause transport events and validation of global chemical transport models.

  19. Diffusion tensor imaging of the brainstem in children with achondroplasia

    PubMed Central

    BOSEMANI, THANGAMADHAN; ORMAN, GUNES; CARSON, KATHRYN A; MEODED, AVNER; HUISMAN, THIERRY A G M; PORETTI, ANDREA

    2014-01-01

    Aim The aims of this study were to compare, using diffusion tensor imaging (DTI) of the brainstem, microstructural integrity of the white matter in children with achondroplasia and age-matched participants and to correlate the severity of craniocervical junction (CCJ) narrowing and neurological findings with DTI scalars in children with achondroplasia. This study also aimed to assess the potential role of fibroblast growth factor receptor type 3 on white matter microstructure. Method Diffusion tensor imaging was performed using a 1.5T magnetic resonance scanner and balanced pairs of diffusion gradients along 20 non-collinear directions. Measurements were obtained from regions of interest, sampled in each pontine corticospinal tract (CST), medial lemniscus, and middle cerebellar peduncle, as well as in the lower brainstem and centrum semiovale, for fractional anisotropy and for mean, axial and radial diffusivity. In addition, a severity score for achondroplasia was assessed by measuring CCJ narrowing. Result Eight patients with achondroplasia (seven males, one female; mean age 5y 6mo, range 1y 1mo–15y 1mo) and eight age- and sex-matched comparison participants (mean age 5y 2mo, range 1y 1mo–14y 11mo) were included in this study. Fractional anisotropy was lower and mean diffusivity and radial diffusivity were higher in the lower brainstem of patients with achondroplasia than in age-matched comparison participants. The CST and middle cerebellar peduncle of the participants showed increases in mean, axial, and radial diffusivity. Fractional anisotropy in the lower brainstem was negatively correlated with the degree of CCJ narrowing. No differences in the DTI metrics of the centrum semiovale were observed between the two groups. Interpretation The reduction in fractional anisotropy and increase in diffusivities in the lower brainstem of participants with achondroplasia may reflect secondary encephalomalacic degeneration and cavitation of the affected white matter

  20. Postcranial skeletal pneumaticity: a case study in the use of quantitative microCT to assess vertebral structure in birds.

    PubMed

    Fajardo, R J; Hernandez, E; O'Connor, P M

    2007-07-01

    Limb elements in birds have been characterized as exhibiting a reduction in trabecular bone, thinner cortices and decreased bending strength when pneumatized, yet it is unclear if these characteristics generalize to the axial skeleton. Thin section techniques, the traditional gold standard for bone structure studies, have most commonly been applied to the study of avian bone. This destructive technique, however, makes it subsequently impossible to use the same samples in experimental testing systems that allow researchers to correlate structure with the mechanical properties of the bone. Micro-computed tomography (microCT), a non-destructive X-ray imaging technique, can be used to assess the effect of pneumatization on vertebral cortical and trabecular bone through virtual extraction and structural quantification of each tissue type. We conducted a preliminary investigation of the application of microCT methods to the study of cortical and trabecular bone structure in a small sample of pneumatic and apneumatic thoracic vertebrae. The sample consisted of two similar-sized anatids, Aix sponsa (n = 7) and Oxyura jamaicensis (n = 5). Volumes of interest were created that contoured (outlined) the boundaries of the ventral cortical bone shell, the trabecular compartment and the whole centrum (cortical bone + trabecular bone), and allowed independent structural analysis of each volume of interest. Results indicated that bone volume fraction of the whole centrum was significantly higher in the apneumatic O. jamaicensis than in the pneumatized A. sponsa (A. sponsa = 36%, O. jamaicensis = 48%, P < 0.05). In contrast, trabecular bone volume fraction was similar between the two species. The ventral cortical bone shell was approximately 23% thinner (P < 0.05) in A. sponsa (0.133 mm) compared with apneumatic O. jamaicensis (0.172 mm). This case study demonstrates that microCT is a powerful non-destructive imaging technique that may be applied to the three-dimensional study of

  1. Postcranial skeletal pneumaticity: a case study in the use of quantitative microCT to assess vertebral structure in birds

    PubMed Central

    Fajardo, R J; Hernandez, E; O’Connor, P M

    2007-01-01

    Limb elements in birds have been characterized as exhibiting a reduction in trabecular bone, thinner cortices and decreased bending strength when pneumatized, yet it is unclear if these characteristics generalize to the axial skeleton. Thin section techniques, the traditional gold standard for bone structure studies, have most commonly been applied to the study of avian bone. This destructive technique, however, makes it subsequently impossible to use the same samples in experimental testing systems that allow researchers to correlate structure with the mechanical properties of the bone. Micro-computed tomography (µCT), a non-destructive X-ray imaging technique, can be used to assess the effect of pneumatization on vertebral cortical and trabecular bone through virtual extraction and structural quantification of each tissue type. We conducted a preliminary investigation of the application of µCT methods to the study of cortical and trabecular bone structure in a small sample of pneumatic and apneumatic thoracic vertebrae. The sample consisted of two similar-sized anatids, Aix sponsa (n = 7) and Oxyura jamaicensis (n = 5). Volumes of interest were created that contoured (outlined) the boundaries of the ventral cortical bone shell, the trabecular compartment and the whole centrum (cortical bone + trabecular bone), and allowed independent structural analysis of each volume of interest. Results indicated that bone volume fraction of the whole centrum was significantly higher in the apneumatic O. jamaicensis than in the pneumatized A. sponsa (A. sponsa = 36%, O. jamaicensis = 48%, P < 0.05). In contrast, trabecular bone volume fraction was similar between the two species. The ventral cortical bone shell was approximately 23% thinner (P < 0.05) in A. sponsa (0.133 mm) compared with apneumatic O. jamaicensis (0.172 mm). This case study demonstrates that µCT is a powerful non-destructive imaging technique that may be applied to the three-dimensional study of avian bone

  2. [AERA. Dream machines and computing practices at the Mathematical Center].

    PubMed

    Alberts, Gerard; De Beer, Huub T

    2008-01-01

    Dream machines may be just as effective as the ones materialised. Their symbolic thrust can be quite powerful. The Amsterdam 'Mathematisch Centrum' (Mathematical Center), founded February 11, 1946, created a Computing Department in an effort to realise its goal of serving society. When Aad van Wijngaarden was appointed as head of the Computing Department, however, he claimed space for scientific research and computer construction, next to computing as a service. Still, the computing service following the five stage style of Hartree's numerical analysis remained a dominant characteristic of the work of the Computing Department. The high level of ambition held by Aad van Wijngaarden lead to ever renewed projections of big automatic computers, symbolised by the never-built AERA. Even a machine that was actually constructed, the ARRA which followed A.D. Booth's design of the ARC, never made it into real operation. It did serve Van Wijngaarden to bluff his way into the computer age by midsummer 1952. Not until January 1954 did the computing department have a working stored program computer, which for reasons of policy went under the same name: ARRA. After just one other machine, the ARMAC, had been produced, a separate company, Electrologica, was set up for the manufacture of computers, which produced the rather successful X1 computer. The combination of ambition and absence of a working machine lead to a high level of work on programming, way beyond the usual ideas of libraries of subroutines. Edsger W. Dijkstra in particular led the way to an emphasis on the duties of the programmer within the pattern of numerical analysis. Programs generating programs, known elsewhere as autocoding systems, were at the 'Mathematisch Centrum' called 'superprograms'. Practical examples were usually called a 'complex', in Dutch, where in English one might say 'system'. Historically, this is where software begins. Dekker's matrix complex, Dijkstra's interrupt system, Dijkstra and

  3. The Association of Dietary Lutein/Zeaxanthin and B Vitamins with Cataracts in the Age- Related Eye Disease Study AREDS Report No. 37

    PubMed Central

    Glaser, Tanya S.; Doss, Lauren E.; Shih, Grace; Nigam, Divya; Sperduto, Robert D.; Ferris, Frederick L.; Agrón, Elvira; Clemons, Traci E; Chew, Emily Y.

    2015-01-01

    Purpose To evaluate whether dietary intake of lutein/zeaxanthin and B vitamins is associated with cataract prevalence and incidence. Design Clinic-based, baseline cross-sectional and prospective cohort study designs. Participants 3115 (6129 eyes) persons enrolled in the Age-Related Eye Disease Study, aged 55 to 80 years, followed for mean of 9.6 years. Methods Participants completed baseline food frequency questionnaires. Baseline and annual lens photographs were graded centrally. Multivariable models controlling for previously identified risk factors for cataracts were used to measure the association of cataracts with reported dietary intake, using the lowest quintile as reference. Main Outcome Measures Cataract surgery, cataract status (type and severity) at baseline, development of cataracts. Results At baseline, increased dietary riboflavin and B12 were inversely associated with nuclear and cortical lens opacities. In comparisons of persons with and without cataract, persons with the highest riboflavin intake vs. those with the lowest intake had the following associations: odds ratio (OR): 0.78, 95% confidence interval (CI): 0.63–0.97 for mild nuclear, OR: 0.62, 95% CI: 0.43–0.90 for moderate nuclear, and OR: 0.80, 95% CI: 0.65–0.99 for mild cortical cataracts. For B12, the results were: OR: 0.78, 95% CI: 0.63–0.96 for mild nuclear, OR: 0.62, 95% CI: 0.43–0.88 for moderate nuclear, and OR: 0.77, 95% CI: 0.63–0.95 for mild cortical cataracts. Highest dietary B6 intake was associated with a decreased risk of developing moderate nuclear lens opacity compared with the lowest quintile, OR: 0.67, 95% CI: 0.45–0.99. Highest dietary intake levels of niacin and B12 were associated with a decreased risk of development of mild nuclear or mild cortical cataracts in participants not taking Centrum® multivitamin. For participants taking Centrum® during the study, highest intake of dietary folate was associated with an increased risk of development of mild

  4. Creatine, Glutamine plus Glutamate, and Macromolecules Are Decreased in the Central White Matter of Premature Neonates around Term.

    PubMed

    Koob, Meriam; Viola, Angèle; Le Fur, Yann; Viout, Patrick; Ratiney, Hélène; Confort-Gouny, Sylviane; Cozzone, Patrick J; Girard, Nadine

    2016-01-01

    Preterm birth represents a high risk of neurodevelopmental disabilities when associated with white-matter damage. Recent studies have reported cognitive deficits in children born preterm without brain injury on MRI at term-equivalent age. Understanding the microstructural and metabolic underpinnings of these deficits is essential for their early detection. Here, we used diffusion-weighted imaging and single-voxel 1H magnetic resonance spectroscopy (MRS) to compare brain maturation at term-equivalent age in premature neonates with no evidence of white matter injury on conventional MRI except diffuse excessive high-signal intensity, and normal term neonates. Thirty-two infants, 16 term neonates (mean post-conceptional age at scan: 39.8±1 weeks) and 16 premature neonates (mean gestational age at birth: 29.1±2 weeks, mean post-conceptional age at scan: 39.2±1 weeks) were investigated. The MRI/MRS protocol performed at 1.5T involved diffusion-weighted MRI and localized 1H-MRS with the Point RESolved Spectroscopy (PRESS) sequence. Preterm neonates showed significantly higher ADC values in the temporal white matter (P<0.05), the occipital white matter (P<0.005) and the thalamus (P<0.05). The proton spectrum of the centrum semiovale was characterized by significantly lower taurine/H2O and macromolecules/H2O ratios (P<0.05) at a TE of 30 ms, and reduced (creatine+phosphocreatine)/H2O and (glutamine+glutamate)/H2O ratios (P<0.05) at a TE of 135 ms in the preterm neonates than in full-term neonates. Our findings indicate that premature neonates with normal conventional MRI present a delay in brain maturation affecting the white matter and the thalamus. Their brain metabolic profile is characterized by lower levels of creatine, glutamine plus glutamate, and macromolecules in the centrum semiovale, a finding suggesting altered energy metabolism and protein synthesis. PMID:27547969

  5. [Significance of mTOR (mammalian target of rapamycin) activity in human lymphomas].

    PubMed

    Márk, Ágnes

    2014-06-01

    Neoplastic processes, tumor growth, and tumor cell proliferation and survival are often due to the altered activation of different signaling pathways. The increased activity of PI3K/AKT/mTOR signaling has been shown to be an important regulator of tumor growth in several solid tumors and in mantle cell lymphomas. The active form of mTOR kinase (mammalian target of rapamycin) is a key signaling molecule, and it exists in two different complexes, mTORC1 and mTORC2. In the present work, mTOR activity was investigated in different lymphoma types, in parallel with clinical data. We also examined in Hodgkin lymphomas (HL) the role of mTOR activity in survival mechanisms such as antiapoptotic protein expression and alterations in the microenvironment. We determined which lymphoma types display characteristic high mTOR activity in our TMA (tissue microarray) study. We observed that mTOR activity is increased in mitotic lymphoid cells compared to interphasic cells. The number of diffuse large B cell lymphoma (DLBCL) and HL cases was extended in a further set of TMA. We observed significantly higher mTOR activity in the non-centrum germinativum derived subtype of DLBCL than in the centrum germinativum derived subtype, which was a prognostic marker; 63% of mTOR active cases showed Rictor overexpression, indicating mTORC2 activity. High mTOR activity was also established in 92% of HL cases, which was linked to mTORC1. This finding was not a prognostic marker, however, it can be useful in targeted therapy. We observed the overexpression of the antiapoptotic protein BCL-xL and NFκB-p50 in the majority of mTOR active HLs. HLs showed high numbers of regulatory T cells in the microenvironment and high expression of galectin-1 in tumor cells and in the extracellular matrix, when compared to reactive lymph nodes. We confirmed that mTOR inhibition had significant antiproliferative and antiapoptotic effects in lymphoma cell lines and in lymphoma xenografts (HL, DLBCL, Burkitt lymphoma

  6. Regional changes in vertebra morphology during ontogeny reflect the life history of Atlantic cod (Gadus morhua L.)

    PubMed Central

    Fjelldal, Per G; Totland, Geir K; Hansen, Tom; Kryvi, Harald; Wang, Xiyuan; Søndergaard, Jens L; Grotmol, Sindre

    2013-01-01

    This study examined vertebra formation, morphology, regional characters, and bending properties of the vertebral column of Atlantic cod throughout its life cycle (0–6 years). The first structure to form was the foremost neural arch, 21 days post hatching (dph), and the first vertebra centrum to form – as a chordacentrum – was the 3rd centrum at 28 dph. Thereafter, the notochord centra developed in a regular sequence towards the head and caudal fin. All vertebrae were formed within 50 dph. The vertebral column consisted of 52 (± 2) vertebrae (V) and could be divided into four distinct regions: (i) the cervical region (neck) (V1 and V2), characterized by short vertebra centra, prominent neural spines and absence of articulations with ribs; (ii) the abdominal region (trunk) (V3–V19), characterized by vertebrae with wing-shaped transverse processes (parapophyses) that all articulate with a rib; (iii) the caudal region (tail) (V20–V40), where the vertebra centra have haemal arches with prominent haemal spines; (iv) the ural region (V41 to the last vertebra), characterized by broad neural and haemal spines, providing sites of origin for muscles inserting on the fin rays – lepidotrichs – of the tail fin. The number of vertebrae in the cervical, abdominal and caudal regions was found to be constant, whereas in the ural region, numbers varied from 12 to 15. Geometric modelling based on combination of vertebra lengths, diameters and intervertebral distances showed an even flexibility throughout the column, except in the ural region, where flexibility increased. Throughout ontogeny, the vertebra centra of the different regions followed distinct patterns of growth; the relative length of the vertebrae increased in the cervical and abdominal regions, and decreased in the caudal and ural regions with increasing age. This may reflect changes in swimming mode with age, and/or that the production of large volumes of gametes during sexual maturation requires a

  7. Creatine, Glutamine plus Glutamate, and Macromolecules Are Decreased in the Central White Matter of Premature Neonates around Term

    PubMed Central

    Le Fur, Yann; Viout, Patrick; Ratiney, Hélène; Confort-Gouny, Sylviane; Cozzone, Patrick J.; Girard, Nadine

    2016-01-01

    Preterm birth represents a high risk of neurodevelopmental disabilities when associated with white-matter damage. Recent studies have reported cognitive deficits in children born preterm without brain injury on MRI at term-equivalent age. Understanding the microstructural and metabolic underpinnings of these deficits is essential for their early detection. Here, we used diffusion-weighted imaging and single-voxel 1H magnetic resonance spectroscopy (MRS) to compare brain maturation at term-equivalent age in premature neonates with no evidence of white matter injury on conventional MRI except diffuse excessive high-signal intensity, and normal term neonates. Thirty-two infants, 16 term neonates (mean post-conceptional age at scan: 39.8±1 weeks) and 16 premature neonates (mean gestational age at birth: 29.1±2 weeks, mean post-conceptional age at scan: 39.2±1 weeks) were investigated. The MRI/MRS protocol performed at 1.5T involved diffusion-weighted MRI and localized 1H-MRS with the Point RESolved Spectroscopy (PRESS) sequence. Preterm neonates showed significantly higher ADC values in the temporal white matter (P<0.05), the occipital white matter (P<0.005) and the thalamus (P<0.05). The proton spectrum of the centrum semiovale was characterized by significantly lower taurine/H2O and macromolecules/H2O ratios (P<0.05) at a TE of 30 ms, and reduced (creatine+phosphocreatine)/H2O and (glutamine+glutamate)/H2O ratios (P<0.05) at a TE of 135 ms in the preterm neonates than in full-term neonates. Our findings indicate that premature neonates with normal conventional MRI present a delay in brain maturation affecting the white matter and the thalamus. Their brain metabolic profile is characterized by lower levels of creatine, glutamine plus glutamate, and macromolecules in the centrum semiovale, a finding suggesting altered energy metabolism and protein synthesis. PMID:27547969

  8. A Case Study of the Neti Pot's Rise, Americanization, and Rupture as Integrative Medicine in U.S. Media Discourse.

    PubMed

    Ho, Evelyn Y; Cady, Kathryn A; Robles, Jessica S

    2016-10-01

    In a period of only one decade in the United States, the neti pot shifted from obscure Ayurvedic health device to mainstream complementary and integrative medicine (CIM), touted by celebrities and sold widely in drug stores. We examine the neti pot as a case study for understanding how a foreign health practice became mainstreamed, and what that process reveals about more general discourses of health in the United States. Using discourse analysis of U.S. popular press and new media news (1999-2012) about the neti pot, we trace the development of discourses from neti's first introduction in mainstream news, through the hype following Dr. Oz's presentation on Oprah, to 2011 when two adults tragically died after using Naegleria fowleri amoeba-infested tap water in their neti pots. Neti pot discourses are an important site for communicative analysis because of the pot's complexity as an intercultural artifact: Neti pots and their use are enfolded into the biomedical practice of nasal irrigation and simultaneously Orientalized as exotic/magical and suspect/dangerous. This dual positioning as normal and exotic creates inequitable access for using the neti pot as a resource for increasing cultural health capital (CHC). This article contributes to work that critically theorizes the transnationalism of CIM, as the neti pot became successfully Americanized. These results have implications for understanding global health practices' incorporation or co-optation in new contexts, and the important role that popularly mediated health communication can play in framing what health care products and practices mean for consumers. PMID:26881301

  9. Photooxidation Products of Isoprene Epoxydiols (IEPOX) and IEPOX-Derived Secondary Organic Aerosol

    NASA Astrophysics Data System (ADS)

    Bates, K. H.; Nguyen, T. B.; Coggon, M. M.; Lignell, H.; Stoltz, B.; Wennberg, P. O.; Seinfeld, J.

    2014-12-01

    Isoprene epoxydiol (IEPOX) has recently been identified as a key intermediate in the photooxidation of isoprene under low-NO conditions and in the formation of isoprene-derived secondary organic aerosol (SOA). IEPOX is generally expected to react with OH in the gas phase, where it has been found to form predominantly C4O3H8 products, or undergo reactive uptake onto particles, where it is converted into 2-methyltetrols or organosulfates by acid- or ammonium-catalyzed mechanisms. The subsequent chemistry of these gas- and particle-phase products has not yet been explored. Using synthetic standards of IEPOX and its gas-phase products, we have performed environmental chamber and flow tube experiments to investigate the fate of IEPOX in both the gas and particle phases. To explore the gas-phase chemistry of IEPOX, three potential isomers of the C4O3H8 products were synthesized and photooxidized by exposure to OH. Detection with CF3O- chemical ionization mass spectrometry (CIMS) allowed for determination of their oxidation rates, fractional yields from IEPOX oxidation, and major products. To explore the photooxidation of IEPOX-derived SOA, synthetic IEPOX was reacted with various salts and atomized into a flow tube, where it was photooxidized by exposure to OH. We will present results showing changes in gas- and particle-phase chemical composition, monitored during oxidation by CIMS and aerosol mass spectrometry, including their dependence on both seed particle composition and OH concentration. Preliminary data show that the photochemical loss of IEPOX-derived SOA mass may be an important consideration for predicting aerosol loading and gas phase oxidative chemistry in isoprene-rich environments.

  10. Massively parallel neural circuits for stereoscopic color vision: encoding, decoding and identification.

    PubMed

    Lazar, Aurel A; Slutskiy, Yevgeniy B; Zhou, Yiyin

    2015-03-01

    Past work demonstrated how monochromatic visual stimuli could be faithfully encoded and decoded under Nyquist-type rate conditions. Color visual stimuli were then traditionally encoded and decoded in multiple separate monochromatic channels. The brain, however, appears to mix information about color channels at the earliest stages of the visual system, including the retina itself. If information about color is mixed and encoded by a common pool of neurons, how can colors be demixed and perceived? We present Color Video Time Encoding Machines (Color Video TEMs) for encoding color visual stimuli that take into account a variety of color representations within a single neural circuit. We then derive a Color Video Time Decoding Machine (Color Video TDM) algorithm for color demixing and reconstruction of color visual scenes from spikes produced by a population of visual neurons. In addition, we formulate Color Video Channel Identification Machines (Color Video CIMs) for functionally identifying color visual processing performed by a spiking neural circuit. Furthermore, we derive a duality between TDMs and CIMs that unifies the two and leads to a general theory of neural information representation for stereoscopic color vision. We provide examples demonstrating that a massively parallel color visual neural circuit can be first identified with arbitrary precision and its spike trains can be subsequently used to reconstruct the encoded stimuli. We argue that evaluation of the functional identification methodology can be effectively and intuitively performed in the stimulus space. In this space, a signal reconstructed from spike trains generated by the identified neural circuit can be compared to the original stimulus. PMID:25594573

  11. The "Profiles" document: a modern revision of the objectives of undergraduate medical studies in Switzerland.

    PubMed

    Michaud, Pierre-André; Jucker-Kupper, Patrick; The Profiles Working Group

    2016-01-01

    The Joint Commission of the Swiss Medical Schools (SMIFK/CIMS) decided in 2000 to establish a Swiss Catalogue of Learning Objectives (SCLO) for undergraduate medical training, which was adapted from a similar Dutch blueprint. A second version of the SCLO was developed and launched in 2008. The catalogue is a prerequisite for the accreditation of the curricula of the six Swiss medical faculties and defines the contents of the Federal Licensing Examination (FLE). Given the evolution of the field of medicine and of medical education, the SMIFK/CIMS has decided to embark on a total revision of the SCLO. This article presents the proposed structure and content of Profiles, a new document which, in the future, will direct the format of undergraduate studies and of the FLE. Profiles stands for the Principal Relevant Objectives for Integrative Learning and Education in Switzerland. It is currently being developed by a group of experts from the six Swiss faculties as well as representatives of other institutions involved in these developments. The foundations of Profiles are grounded in the evolution of medical practice and of public health and are based on up-to-date teaching concepts, such as EPAs (entrustable professional activities). An introduction will cover the concepts and a tutorial will be displayed. Three main chapters will provide a description of the seven 2015 CanMEDS roles, a list of core EPAs and a series of ≈250 situations embracing the most frequent and current conditions affecting health. As Profiles is still a work in progress, it is hoped that this paper will attract the interest of all individuals involved in the training of medical students. PMID:26829005

  12. Validation of Aura Microwave Limb Sounder HCl Measurements

    NASA Technical Reports Server (NTRS)

    Froidevaux, L.; Jiang, Y. B.; Lambert, A.; Livesey, N. J.; Read, W. G.; Waters, J. W.; Fuller, R. A.; Marcy, T. P.; Popp, P. J.; Gao, R. S.; Fahey, D. W.; Jucks, K. W.; Stachnik, R. A.; Toon, G. C.; Christensen, L. E.; Webster, C. R.; Bernath, P. F.; Boone, C. D.; Walker, K. A.; Pumphrey, H. C.; Harwood, R. S.; Manney, G. L.; Schwartz, M. J.; Daffer, W. H.; Drouin, B. J.

    2008-01-01

    The Earth Observing System (EOS) Microwave Limb Sounder (MLS) aboard the Aura satellite has provided daily global HCl profiles since August 2004. We provide a characterization of the resolution, random and systematic uncertainties, and known issues for the version 2.2 MLS HCl data. The MLS sampling allows for comparisons with many (1500 to more than 3000) closely matched profiles from the Halogen Occultation Experiment (HALOE) and Atmospheric Chemistry Experiment Fourier Transform Spectrometer (ACE-FTS). These data sets provide HCl latitudinal distributions that are, overall, very similar to those from (coincident) MLS profiles, although there are some discrepancies in the upper stratosphere between the MLS and HALOE gradients. As found in previous work, MLS and ACE HCl profiles agree very well (within approximately 5%, on average), but the MLS HCl abundances are generally larger (by 10-20%) than HALOE HCl. The bias versus HALOE is unlikely to arise mostly from MLS, as a similar systematic bias (of order 15%) is not observed between average MLS and balloon-borne measurements of HCl, obtained over Fort Sumner, New Mexico, in 2004 and 2005. At the largest pressure (147 hPa) for MLS HCl, a high bias (approximately 0.2 ppbv) is apparent in analyses of low to midlatitude data versus in situ aircraft chemical ionization mass spectrometry (CIMS) HCl measurements from the Aura Validation Experiment (AVE) campaigns in 2004, 2005, and 2006; this bias is also observed in comparisons of MLS and aircraftHCl/O3 correlations. Good agreement between MLS and CIMS HCl is obtained at 100 to 68 hPa. The recommended pressure range for MLS HCl is from 100 to 0.15 hPa.

  13. Volatility of methylglyoxal cloud SOA formed through OH radical oxidation and droplet evaporation

    NASA Astrophysics Data System (ADS)

    Ortiz-Montalvo, Diana L.; Schwier, Allison N.; Lim, Yong B.; McNeill, V. Faye; Turpin, Barbara J.

    2016-04-01

    The volatility of secondary organic aerosol (SOA) formed through cloud processing (aqueous hydroxyl radical (radOH) oxidation and droplet evaporation) of methylglyoxal (MGly) was studied. Effective vapor pressure and effective enthalpy of vaporization (ΔHvap,eff) were determined using 1) droplets containing MGly and its oxidation products, 2) a Vibrating Orifice Aerosol Generator (VOAG) system, and 3) Temperature Programmed Desorption Aerosol-Chemical Ionization Mass Spectrometry (TPD Aerosol-CIMS). Simulated in-cloud MGly oxidation (for 10-30 min) produces an organic mixture of higher and lower volatility components with an overall effective vapor pressure of (4 ± 7) × 10-7 atm at pH 3. The effective vapor pressure decreases by a factor of 2 with addition of ammonium hydroxide (pH 7). The fraction of organic material remaining in the particle-phase after drying was smaller than for similar experiments with glycolaldehyde and glyoxal SOA. The ΔHvap,eff of pyruvic acid and oxalic acid + methylglyoxal in the mixture (from TPD Aerosol-CIMS) were smaller than the theoretical enthalpies of the pure compounds and smaller than that estimated for the entire precursor/product mix after droplet evaporation. After 10-30 min of aqueous oxidation (one cloud cycle) the majority of the MGly + radOH precursor/product mix (even neutralized) will volatilize during droplet evaporation; neutralization and at least 80 min of oxidation at 10-12 M radOH (or >12 h at 10-14 M) is needed before low volatility ammonium oxalate exceeds pyruvate.

  14. A Cationic-Independent Mannose 6-Phosphate Receptor Inhibitor (PXS64) Ameliorates Kidney Fibrosis by Inhibiting Activation of Transforming Growth Factor-β1

    PubMed Central

    Zhang, Jie; Wong, Muh Geot; Wong, May; Gross, Simon; Chen, Jason; Pollock, Carol; Saad, Sonia

    2015-01-01

    The activity of transforming growth factor-β1 (TGF-β1) is regulated by its conversion from the latent to the active form. We have previously shown that the conversion is at least in part mediated by the cationic-independent mannose 6-phosphate receptor (CI-M6PR), as the CI-M6PR inhibitor, PXS-25 has anti-fibrotic properties in human kidney tubular (HK-2) cells under high glucose conditions. However, its clinical use is limited by low bioavailability. Our aim was to determine the effects of PXS64, a pro-drug of PXS25, in in vitro and in vivo models of renal fibrosis. HK-2 cells were exposed to latent TGFβ1+/- PXS64 for 48 hours. The mRNA and protein levels of pro-fibrotic and pro-inflammatory markers were determined. A 7 day unilateral ureteric obstruction (UUO) model was used and the following experimental groups were studied: (i) Sham operated, (ii) UUO, (iii) UUO + telmisartan (iv) UUO + PSX64. HK-2 cells exposed to PXS64 reduced TGFβ mediated effects on collagen IV, fibronectin, macrophage chemotactic protein-1 (MCP-1) and phospho-smad2 protein expression, consistent with inhibition of the conversion of latent to active TGF-β1. PXS 64 treated UUO mice had a lower tubulointerstitial fibrosis index, collagen IV and fibronectin protein and mRNA expression when compared to untreated UUO mice. In addition, these animals had lower MCP-1 mRNA expression, reduced inflammarory cell infiltrate, as indicated by fewer CD45, F4/80 positive cells, and reduced phospho-Smad2 protein expression when compared to untreated UUO animals. Our data demonstrates that PSX64 is an effective anti-fibrotic agent by inhibiting the activation of latent TGF-β1. PMID:25658916

  15. Parametric Modelling (bim) for the Documentation of Vernacular Construction Methods: a Bim Model for the Commissariat Building, Ottawa, Canada

    NASA Astrophysics Data System (ADS)

    Fai, S.; Filippi, M.; Paliaga, S.

    2013-07-01

    Whether a house of worship or a simple farmhouse, the fabrication of a building reveals both the unspoken cultural aspirations of the builder and the inevitable exigencies of the construction process. In other-words, why buildings are made is intimately and inevitably associated with how buildings are made. Nowhere is this more evident than in vernacular architecture. At the Carleton Immersive Media Studio (CIMS) we are concerned that the de-population of Canada's rural areas, paucity of specialized tradespersons, and increasing complexity of building codes threaten the sustainability of this invaluable cultural resource. For current and future generations, the quantitative and qualitative values of traditional methods of construction are essential for an inclusive cultural memory. More practically, and equally pressing, an operational knowledge of these technologies is essential for the conservation of our built heritage. To address these concerns, CIMS has launched a number of research initiatives over the past five years that explore novel protocols for the documentation and dissemination of knowledge related to traditional methods of construction. Our current project, Cultural Diversity and Material Imagination in Canadian Architecture (CDMICA), made possible through funding from Canada's Social Sciences and Humanities Research Council (SSHRC), explores the potential of building information modelling (BIM) within the context of a web-based environment. In this paper, we discuss our work-to-date on the development of a web-based library of BIM details that is referenced to ''typical'' assemblies culled from 19C and early 20C construction manuals. The parametric potential of these ''typical'' details is further refined by evidence from the documentation of ''specific'' details studied during comprehensive surveys of extant heritage buildings. Here, we consider a BIM of the roof truss assembly of one of the oldest buildings in Canada's national

  16. Performance evaluation of trigger algorithm for the MACE telescope

    NASA Astrophysics Data System (ADS)

    Yadav, Kuldeep; Yadav, K. K.; Bhatt, N.; Chouhan, N.; Sikder, S. S.; Behere, A.; Pithawa, C. K.; Tickoo, A. K.; Rannot, R. C.; Bhattacharyya, S.; Mitra, A. K.; Koul, R.

    The MACE (Major Atmospheric Cherenkov Experiment) telescope with a light collector diameter of 21 m, is being set up at Hanle (32.80 N, 78.90 E, 4200m asl) India, to explore the gamma-ray sky in the tens of GeV energy range. The imaging camera of the telescope comprises 1088 pixels covering a total field-of-view of 4.30 × 4.00 with trigger field-of-view of 2.60 × 3.00 and an uniform pixel resolution of 0.120. In order to achieve low energy trigger threshold of less than 30 GeV, a two level trigger scheme is being designed for the telescope. The first level trigger is generated within 16 pixels of the Camera Integrated Module (CIM) based on 4 nearest neighbour (4NN) close cluster configuration within a coincidence gate window of 5 ns while the second level trigger is generated by combining the first level triggers from neighbouring CIMs. Each pixel of the telescope is expected to operate at a single pixel threshold between 8-10 photo-electrons where the single channel rate dominated by the after- pulsing is expected to be ˜500 kHz. The hardware implementation of the trigger logic is based on complex programmable logic devices (CPLD). The basic design concept, hardware implementation and performance evaluation of the trigger system in terms of threshold energy and trigger rate estimates based on Monte Carlo data for the MACE telescope will be presented in this meeting.

  17. A novel method for online analysis of gas and particle composition: description and evaluation of a Filter Inlet for Gases and AEROsols (FIGAERO)

    NASA Astrophysics Data System (ADS)

    Lopez-Hilfiker, F. D.; Mohr, C.; Ehn, M.; Rubach, F.; Kleist, E.; Wildt, J.; Mentel, Th. F.; Lutz, A.; Hallquist, M.; Worsnop, D.; Thornton, J. A.

    2014-04-01

    We describe a novel inlet that allows measurement of both gas and particle molecular composition when coupled to mass spectrometric, chromatographic, or optical sensors: the Filter Inlet for Gases and AEROsols (FIGAERO). The design goals for the FIGAERO are to allow unperturbed observation of ambient air while simultaneously analyzing gases and collecting particulate matter on a Teflon® (hereafter Teflon) filter via an entirely separate sampling port. The filter is analyzed periodically by the same sensor on hourly or faster timescales using temperature-programmed thermal desorption. We assess the performance of the FIGAERO by coupling it to a high-resolution time-of-flight chemical-ionization mass spectrometer (HRToF-CIMS) in laboratory chamber studies of α-pinene oxidation and field measurements at a boreal forest location. Low instrument backgrounds give detection limits of ppt or lower for compounds in the gas-phase and in the picogram m-3 range for particle phase compounds. The FIGAERO-HRToF-CIMS provides molecular information about both gases and particle composition on the 1 Hz and hourly timescales, respectively for hundreds of compounds. The FIGAERO thermal desorptions are highly reproducible (better than 10%), allowing a calibrated assessment of the effective volatility of desorbing compounds and the role of thermal decomposition during the desorption process. We show that the often multi-modal desorption thermograms arising from secondary organic aerosol (SOA) provide additional insights into molecular composition and/or particle morphology, and exhibit changes with changes in SOA formation or aging pathways.

  18. Very-long-chain fatty acids restrict regeneration capacity by confining pericycle competence for callus formation in Arabidopsis.

    PubMed

    Shang, Baoshuan; Xu, Chongyi; Zhang, Xixi; Cao, Huifen; Xin, Wei; Hu, Yuxin

    2016-05-01

    The already differentiated organs in plants have a remarkable capacity to regenerate new individuals under culture conditions. Plant in vitro regeneration practically starts with the induction of a pluripotent cell mass, the callus, from detached organs on auxin-rich callus-inducing medium (CIM), which is generally required for subsequent regeneration of new bodies. Recent studies show that CIM-induced callus formation occurs from the pericycle or pericycle-like cells through a root developmental pathway, whereas the signals involved in governing callus-forming capacity of pericycle cells remain unknown. Here we report that very-long-chain fatty acids (VLCFAs) play a critical role in confining the pericycle competence for callus formation and thus the regeneration capacity of Arabidopsis By genetic screening, we identified the callus formation-related 1 (cfr1) mutant, which bypasses the inhibition of callus-forming capacity in roots by solitary-root (slr/iaa14). We show that CFR1 encodes 3-ketoacyl-CoA synthase 1 (KCS1), which catalyzes a rate-limiting step of VLCFA biosynthesis. Our biochemical and genetic analyses demonstrate that VLCFAs restrict the pericycle competence for callus formation, at least in part, by regulating the transcription of Aberrant Lateral Root Formation 4 (ALF4). Moreover, we provide evidence that VLCFAs act as cell layer signals to mediate the pericycle competence for callus formation. Taken together, our results identify VLCFAs or their derivatives as the confining signals for mediating the pericycle competence for callus formation and thus the regeneration capacity of plant organs. PMID:27092001

  19. Field inter-comparison of eleven atmospheric ammonia measurement techniques

    NASA Astrophysics Data System (ADS)

    von Bobrutzki, K.; Braban, C. F.; Famulari, D.; Jones, S. K.; Blackall, T.; Smith, T. E. L.; Blom, M.; Coe, H.; Gallagher, M.; Ghalaieny, M.; McGillen, M. R.; Percival, C. J.; Whitehead, J. D.; Ellis, R.; Murphy, J.; Mohacsi, A.; Pogany, A.; Junninen, H.; Rantanen, S.; Sutton, M. A.; Nemitz, E.

    2010-01-01

    Eleven instruments for the measurement of ambient concentrations of atmospheric ammonia gas (NH3), based on eight different measurement methods were inter-compared above an intensively managed agricultural field in late summer 2008 in Southern Scotland. To test the instruments over a wide range of concentrations, the field was fertilised with urea midway through the experiment, leading to an increase in the average concentration from 10 to 100 ppbv. The instruments deployed included three wet-chemistry systems, one with offline analysis (annular rotating batch denuder, RBD) and two with online-analysis (Annular Denuder sampling with online Analysis, AMANDA; AiRRmonia), two Quantum Cascade Laser Absorption Spectrometers (a large-cell dual system; DUAL-QCLAS, and a compact system; c-QCLAS), two photo-acoustic spectrometers (WaSul-Flux; Nitrolux-100), a Cavity Ring Down Spectrosmeter (CRDS), a Chemical Ionisation Mass Spectrometer (CIMS), an ion mobility spectrometer (IMS) and an Open-Path Fourier Transform Infra-Red (OP-FTIR) Spectrometer. The instruments were compared with each other and with the average concentration of all instruments. An overall good agreement of hourly average concentrations between the instruments (R2>0.84), was observed for NH3 concentrations at the field of up to 120 ppbv with the slopes against the average ranging from 0.67 (DUAL-QCLAS) to 1.13 (AiRRmonia) with intercepts of -0.74 ppbv (RBD) to +2.69 ppbv (CIMS). More variability was found for performance for lower concentrations (<10 ppbv). Here the main factors affecting measurement precision are (a) the inlet design, (b) the state of inlet filters (where applicable), and (c) the quality of gas-phase standards (where applicable). By reference to the fast (1 Hz) instruments deployed during the study, it was possible to characterize the response times of the slower instruments.

  20. Field inter-comparison of eleven atmospheric ammonia measurement techniques

    NASA Astrophysics Data System (ADS)

    von Bobrutzki, K.; Braban, C. F.; Famulari, D.; Jones, S. K.; Blackall, T.; Smith, T. E. L.; Blom, M.; Coe, H.; Gallagher, M.; Ghalaieny, M.; McGillen, M. R.; Percival, C. J.; Whitehead, J. D.; Ellis, R.; Murphy, J.; Mohacsi, A.; Junninen, H.; Pogany, A.; Rantanen, S.; Sutton, M. A.; Nemitz, E.

    2009-08-01

    Eleven instruments for the measurement of ambient concentrations of atmospheric ammonia gas (NH3), based on eight different measurement methods were inter-compared above an intensively managed agricultural field in late summer 2008 in S. Scotland. To test the instruments over a wide range of concentrations, the field was fertilised with urea midway through the experiment, leading to an increase in the average concentration from 10 to 100 ppbv. The instruments deployed included three wet-chemistry systems, one with offline analysis (annular rotating batch denuder, RBD) and two with online-analysis (Annular Denuder sampling with online Analysis, AMANDA; AiRRmonia), two Quantum Cascade Laser Absorption Spectrometers (a large-cell dual system, DUAL-QCLAS, and a compact system, c-QCLAS), two photo-acoustic spectrometers (WaSul-Flux, Nitrolux-100), a Cavity Ring Down Spectrosmeter (CRDS), a Chemical Ionisation Mass Spectrometer (CIMS), an ion mobility spectrometer (IMS) and an Open-Path Fourier Transform Infra-Red (OP-FTIR) spectroscopy. Each instrument was compared with each other and with the average concentration of all instruments. An overall good agreement of hourly average concentrations between the instruments (R2>0.84), was observed for NH3 concentrations at the field of up to 120 ppbv with the slopes against the average ranging from 0.67 (DUAL-QCLAS) to 1.13 (AiRRmonia) with intercepts of -0.74 ppbv (RBD) to +2.69 ppbv (CIMS). More variability was found for performance for lower concentrations (<10 ppbv). Here the overruling factors affecting measurement precision are (a) the inlet design, (b) the state of inlet filters (where applicable), and (c) the quality of gas-phase standards (where applicable). By reference to the fast (1 Hz) instruments deployed during the study, it was possible to characterize the response times of the slower instruments.

  1. A QTL study on late leaf spot and rust revealed one major QTL for molecular breeding for rust resistance in groundnut (Arachis hypogaea L.)

    PubMed Central

    Khedikar, Y. P.; Gowda, M. V. C.; Sarvamangala, C.; Patgar, K. V.; Upadhyaya, H. D.

    2010-01-01

    Late leaf spot (LLS) and rust are two major foliar diseases of groundnut (Arachis hypogaea L.) that often occur together leading to 50–70% yield loss in the crop. A total of 268 recombinant inbred lines of a mapping population TAG 24 × GPBD 4 segregating for LLS and rust were used to undertake quantitative trait locus (QTL) analysis. Phenotyping of the population was carried out under artificial disease epiphytotics. Positive correlations between different stages, high to very high heritability and independent nature of inheritance between both the diseases were observed. Parental genotypes were screened with 1,089 simple sequence repeat (SSR) markers, of which 67 (6.15%) were found polymorphic. Segregation data obtained for these markers facilitated development of partial linkage map (14 linkage groups) with 56 SSR loci. Composite interval mapping (CIM) undertaken on genotyping and phenotyping data yielded 11 QTLs for LLS (explaining 1.70–6.50% phenotypic variation) in three environments and 12 QTLs for rust (explaining 1.70–55.20% phenotypic variation). Interestingly a major QTL associated with rust (QTLrust01), contributing 6.90–55.20% variation, was identified by both CIM and single marker analysis (SMA). A candidate SSR marker (IPAHM 103) linked with this QTL was validated using a wide range of resistant/susceptible breeding lines as well as progeny lines of another mapping population (TG 26 × GPBD 4). Therefore, this marker should be useful for introgressing the major QTL for rust in desired lines/varieties of groundnut through marker-assisted backcrossing. Electronic supplementary material The online version of this article (doi:10.1007/s00122-010-1366-x) contains supplementary material, which is available to authorized users. PMID:20526757

  2. Measurement of Gas-phase Acids in Diesel Exhaust

    NASA Astrophysics Data System (ADS)

    Wentzell, J. J.; Liggio, J.; Li, S.; Vlasenko, A. L.; Staebler, R. M.; Brook, J.; Lu, G.; Poitras, M.; Chan, T.

    2012-12-01

    Gas-phase acids were measured using chemical ionization mass spectrometry (CIMS) as part of the Diesel Engine Emission Research Experiment (DEERE). The CIMS technique, utilizing acetate ion (CH3COO-) as a reagent ion, proved to be a rapid (measurements on the order of seconds) and sensitive (several counts/pptv) method of quantifying the acid emissions. Diluted diesel exhaust measurements were made from a Constant Volume Sampling dilution tunnel using a light duty (1.9L turbocharged Volkswagen Jetta TDI) diesel engine equipped with an OEM diesel oxidation catalyst and exhaust gas recirculation, mounted on an engine dynamometer. Acids measured included isocyanic, nitrous, nitric, propionic and sum of lactic and oxalic, as well as other unidentified compounds. Complimentary measurements of CO, CO2, Total Hydrocarbon (THC), and NOx, were also performed. Several engine modes (different engine rpm and torque outputs) at steady state were examined to determine their effect on acid emissions. Emission rates with respect to NOx and fuel based emission factors were determined. Measurements of HONO fuel emission factors agree well with real-world measurements within a traffic tunnel.1 The first estimate of isocyanic acid emission factors from a diesel engine is reported, and suggests that the emission of this highly toxic compound in diesel exhaust should not be ignored. 1. Kurtenbach, R., Becker, K. H., Gomes, J. A. G., Kleffmann, J.,Lorzer, J. C., Spittler, M., Wiesen, P., Ackermann, R., Geyer, A.,and Platt, U.: Investigations of emissions and heterogeneous formation of HONO in a road traffic tunnel, Atmos. Environ., 35, 3385-3394, doi:10.1016/S1352-2310(01)00138-8, 2001.

  3. Isoleucine biosynthesis in Leptospira interrogans serotype lai strain 56601 proceeds via a threonine-independent pathway.

    PubMed

    Xu, Hai; Zhang, Yuzhen; Guo, Xiaokui; Ren, Shuangxi; Staempfli, Andreas A; Chiao, Juishen; Jiang, Weihong; Zhao, Guoping

    2004-08-01

    Three leuA-like protein-coding sequences were identified in Leptospira interrogans. One of these, the cimA gene, was shown to encode citramalate synthase (EC 4.1.3.-). The other two encoded alpha-isopropylmalate synthase (EC 4.1.3.12). Expressed in Escherichia coli, the citramalate synthase was purified and characterized. Although its activity was relatively low, it was strictly specific for pyruvate as the keto acid substrate. Unlike the citramalate synthase of the thermophile Methanococcus jannaschii, the L. interrogans enzyme is temperature sensitive but exhibits a much lower K(m) (0.04 mM) for pyruvate. The reaction product was characterized as (R)-citramalate, and the proposed beta-methyl-d-malate pathway was further confirmed by demonstrating that citraconate was the substrate for the following reaction. This alternative pathway for isoleucine biosynthesis from pyruvate was analyzed both in vitro by assays of leptospiral isopropylmalate isomerase (EC 4.2.1.33) and beta-isopropylmalate dehydrogenase (EC 1.1.1.85) in E. coli extracts bearing the corresponding clones and in vivo by complementation of E. coli ilvA, leuC/D, and leuB mutants. Thus, the existence of a leucine-like pathway for isoleucine biosynthesis in L. interrogans under physiological conditions was unequivocally proven. Significant variations in either the enzymatic activities or mRNA levels of the cimA and leuA genes were detected in L. interrogans grown on minimal medium supplemented with different levels of the corresponding amino acids or in cells grown on serum-containing rich medium. The similarity of this metabolic pathway in leptospires and archaea is consistent with the evolutionarily primitive status of the eubacterial spirochetes. PMID:15292141

  4. Genetic mapping of QTLs for sugar-related traits in a RIL population of Sorghum bicolor L. Moench.

    PubMed

    Shiringani, Amukelani Lacrecia; Frisch, Matthias; Friedt, Wolfgang

    2010-07-01

    The productivity of sorghum is mainly determined by quantitative traits such as grain yield and stem sugar-related characteristics. Substantial crop improvement has been achieved by breeding in the last decades. Today, genetic mapping and characterization of quantitative trait loci (QTLs) is considered a valuable tool for trait enhancement. We have investigated QTL associated with the sugar components (Brix, glucose, sucrose, and total sugar content) and sugar-related agronomic traits (flowering date, plant height, stem diameter, tiller number per plant, fresh panicle weight, and estimated juice weight) in four different environments (two locations) using a population of 188 recombinant inbred lines (RILs) from a cross between grain (M71) and sweet sorghum (SS79). A genetic map with 157 AFLP, SSR, and EST-SSR markers was constructed, and several QTLs were detected using composite interval mapping (CIM). Further, additive x additive interaction and QTL x environmental interaction were estimated. CIM identified more than five additive QTLs in most traits explaining a range of 6.0-26.1% of the phenotypic variation. A total of 24 digenic epistatic locus pairs were identified in seven traits, supporting the hypothesis that QTL analysis without considering epistasis can result in biased estimates. QTLs showing multiple effects were identified, where the major QTL on SBI-06 was significantly associated with most of the traits, i.e., flowering date, plant height, Brix, sucrose, and sugar content. Four out of ten traits studied showed a significant QTL x environmental interaction. Our results are an important step toward marker-assisted selection for sugar-related traits and biofuel yield in sorghum. PMID:20229249

  5. Kinetics, Mechanism, and Secondary Organic Aerosol Yield of Aqueous Phase Photo-oxidation of α-Pinene Oxidation Products.

    PubMed

    Aljawhary, Dana; Zhao, Ran; Lee, Alex K Y; Wang, Chen; Abbatt, Jonathan P D

    2016-03-10

    Formation of secondary organic aerosol (SOA) involves atmospheric oxidation of volatile organic compounds (VOCs), the majority of which are emitted from biogenic sources. Oxidation can occur not only in the gas-phase but also in atmospheric aqueous phases such as cloudwater and aerosol liquid water. This study explores for the first time the aqueous-phase OH oxidation chemistry of oxidation products of α-pinene, a major biogenic VOC species emitted to the atmosphere. The kinetics, reaction mechanisms, and formation of SOA compounds in the aqueous phase of two model compounds, cis-pinonic acid (PIN) and tricarballylic acid (TCA), were investigated in the laboratory; TCA was used as a surrogate for 3-methyl-1,2,3-butanetricarboxylic acid (MBTCA), a known α-pinene oxidation product. Aerosol time-of-flight chemical ionization mass spectrometry (Aerosol-ToF-CIMS) was used to follow the kinetics and reaction mechanisms at the molecular level. Room-temperature second-order rate constants of PIN and TCA were determined to be 3.3 (±0.5) × 10(9) and 3.1 (±0.2) × 10(8) M(-1) s(-1), respectively, from which were estimated their condensed-phase atmospheric lifetimes. Aerosol-ToF-CIMS detected a large number of products leading to detailed reaction mechanisms for PIN and MBTCA. By monitoring the particle size distribution after drying, the amount of SOA material remaining in the particle phase was determined. An aqueous SOA yield of 40 to 60% was determined for PIN OH oxidation. Although recent laboratory studies have focused primarily on aqueous-phase processing of isoprene-related compounds, we demonstrate that aqueous formation of SOA materials also occurs from monoterpene oxidation products, thus representing an additional source of biogenically driven aerosol formation. PMID:26299576

  6. Observations of nitryl chloride and modeling its source and effect on ozone in the planetary boundary layer of southern China

    NASA Astrophysics Data System (ADS)

    Wang, Tao; Tham, Yee Jun; Xue, Likun; Li, Qinyi; Zha, Qiaozhi; Wang, Zhe; Poon, Steven C. N.; Dubé, William P.; Blake, Donald R.; Louie, Peter K. K.; Luk, Connie W. Y.; Tsui, Wilson; Brown, Steven S.

    2016-03-01

    Nitryl chloride (ClNO2) plays potentially important roles in atmospheric chemistry, but its abundance and effect are not fully understood due to the small number of ambient observations of ClNO2 to date. In late autumn 2013, ClNO2 was measured with a chemical ionization mass spectrometer (CIMS) at a mountain top (957 m above sea level) in Hong Kong. During 12 nights with continuous CIMS data, elevated mixing ratios of ClNO2 (>400 parts per trillion by volume) or its precursor N2O5 (>1000 pptv) were observed on six nights, with the highest ever reported ClNO2 (4.7 ppbv, 1 min average) and N2O5 (7.7 ppbv, 1 min average) in one case. Backward particle dispersion calculations driven by winds simulated with a mesoscale meteorological model show that the ClNO2/N2O5-laden air at the high-elevation site was due to transport of urban/industrial pollution north of the site. The highest ClNO2/N2O5 case was observed in a later period of the night and was characterized with extensively processed air and with the presence of nonoceanic chloride. A chemical box model with detailed chlorine chemistry was used to assess the possible impact of the ClNO2 in the well-processed regional plume on next day ozone, as the air mass continued to downwind locations. The results show that the ClNO2 could enhance ozone by 5-16% at the ozone peak or 11-41% daytime ozone production in the following day. This study highlights varying importance of the ClNO2 chemistry in polluted environments and the need to consider this process in photochemical models for prediction of ground-level ozone and haze.

  7. Genetic analysis of adult plant, quantitative resistance to stripe rust in wheat cultivar 'Stephens' in multi-environment trials.

    PubMed

    Dolores Vazquez, M; James Peterson, C; Riera-Lizarazu, Oscar; Chen, Xianming; Heesacker, Adam; Ammar, Karim; Crossa, Jose; Mundt, Christopher C

    2012-01-01

    The wheat (Triticum aestivum L.) cultivar 'Stephens' has been grown commercially in the USA Pacific Northwest for 30 years. The durable resistance of 'Stephens' to stripe rust (Puccinia striiformis f. sp. tritici) was believed to be due to a combination of seedling and adult plant resistance genes. Multilocation field trials, diversity array technology (DArT), and simple sequence repeat (SSR) markers were used to identify quantitative trait loci (QTL) for resistance. Recombinant inbred lines were assessed for stripe rust response in eight locations/years, five in 2008 and three in 2009. The data from Mt. Vernon, WA, differed from all other environments, and composite interval mapping (CIM) identified three QTL, QYrst.orr-1AL, QYrst.orr-4BS, and QYrpl.orr-6AL, which accounted for 12, 11, and 6% of the phenotypic variance, respectively. CIM across the remaining six environments identified four main QTL. Two QTL, QYrst.orr-2BS.2 and QYrst.orr-7AS, were detected in five of six environments and explained 11 and 15% of the phenotypic variance, respectively. Two other QTL, QYrst.orr-2AS and QYrpl.orr-4BL, were detected across four and three of six environments, and explained 19 and 9% of the phenotypic variance, respectively. The susceptible parent 'Platte' contributed QYrpl.orr-4BL and QYrpl.orr-6AL, with the remaining QTL originating from 'Stephens'. For each environment, additional minor QTL were detected, each accounting for 6-10% of the phenotypic variance. Different QTL with moderate effects were identified in both 'Stephens' and 'Platte'. Significant QTL × environment interactions were evident, suggesting that specificity to plant stage, pathogen genotype, and/or temperature was important. PMID:21912857

  8. Quantitative trait loci mapping and genetic dissection for lint percentage in upland cotton (Gossypium hirsutum).

    PubMed

    Wang, Min; Li, Chengqi; Wang, Qinglian

    2014-08-01

    Lint percentage is an important character of cotton yield components and it is also correlated with cotton fibre development. In this study, we used a high lint percentage variety, Baimian1, and a low lint percentage, TM-1 genetic standard for Gossypium hirsutum, as parents to construct a mapping populations in upland cotton (G. hirsutum). A quantitative trait locus/loci (QTL) analysis of lint percentage was performed by using two mapping procedures; composite interval mapping (CIM), inclusive composite interval mapping (ICIM) and the F2:3 populations in 2 years. Six main-effect QTL (M-QTL) for lint percentage (four significant and two suggestive) were detected in both years by CIM, and were located on chr. 3, chr. 19, chr. 26 and chr. 5/chr. 19. Of the six QTL, marker intervals and favourable gene sources of the significant M-QTL, qLP-3(2010) and qLP-3(2011) were consistent. These QTL were also detected by ICIM, and therefore, should preferentially be used for markerassisted selection (MAS) of lint percentage. Another M-QTL, qLP-19(2010), was detected by two mapping procedures, and it could also be a candidate for MAS. We detected the interaction between two M-QTL and environment, and 11 epistatic QTL (E-QTL) and their interaction with environment by using ICIM. The study also found two EST-SSRs, NAU1187 and NAU1255, linked to M-QTL for lint percentage that could be candidate markers affecting cotton fibre development. PMID:25189232

  9. Self-Shielding Correlation of Foil Activation Neutron Spectra Analysis by SAND-II.

    Energy Science and Technology Software Center (ESTSC)

    2008-11-21

    Version 00 SELFS-3 corrects for the influence of the self-shielding effect in neutron spectrum determinations by means of the multifoil activation method. It is used in combination with the SAND-II program for unfolding the responses of an irradiated set of activation detectors in 620 groups. The program SELFS can calculate a corrected 620 group cross section data set for specified reactions used in the SAND-II library, and for specified foil thicknesses. This procedure requires nomore » additional assumption on the shape of the neutron spectrum and on other experimental conditions, but only some foil characteristics (reaction type, material composition, foil thickness). Application of this procedure is possible when multigroup unfolding programs are used with suitably small energy intervals. This code system was developed in the 1970’s at Reactor Centrum Nederland, Petten, The Netherlands, and was contributed to RSICC through the NEA Data Bank. No changes were made to the package when it was released by RSICC in 2008. Modifications will be required to run SELFS-3 on current computer systems.« less

  10. [Case of cerebral venous thrombosis caused by MPO-ANCA associated hypertrophic pachymeningitis].

    PubMed

    Saito, Tsutomu; Fujimori, Juichi; Yoshida, Shun; Kaneko, Kimihiko; Kodera, Takao

    2014-01-01

    This report describes a 72-year-old woman presenting MPO-ANCA-associated hypertrophic pachymeningitis and venous thrombosis. Five years prior, positive MPO-ANCA and renal dysfunction had been indicated. At that time, oral steroids and tacrolimus were given to treat systemic vasculitis. During the course of the disease, she repeated otitis media. Saddle nose appeared. She was suspected of having localized type granulomatosis with polyangiitis (GPA). She was hospitalized because of consciousness disturbance and was diagnosed as having MPO-ANCA-associated hypertrophic pachymenigitis and venous thrombosis. Brain MRI detected thick dura mater with abnormal enhancement, predominantly on the right cerebral hemisphere, and tentorium cerebella partially along with the cerebral sulci. MRI revealed vasogenic brain edema lesions in the right occipital, parietal, and temporal lobes and cytotoxic edema lesions in the right parietal lobe and centrum semiovale. MR venography revealed stenosis of the venous sinus including confluence of sinuses, straight sinus, and right transverse sinus. Subsequent treatment with corticosteroids, an immunosuppressant, and an anticoagulant led to recovery. No patient with MPO-ANCA-associated hypertrophic pachymenigitis and venous thrombosis that developed alternation of consciousness has ever been reported. This is therefore regarded as a rare case. PMID:25342019

  11. Laser-guided placement of the tibial guide in the transtibial technique for anterior cruciate ligament reconstruction.

    PubMed

    Takahashi, Toshiaki; Takeda, Haruhiko; Watanabe, Seiji; Yamamoto, Haruyasu

    2009-02-01

    In anterior cruciate ligament (ACL) reconstruction, it is important to determine the location and direction of the femoral bone tunnel when using the transtibial technique. Accurately identifying the anatomic location at which to make the femoral bone tunnel for double-bundle ACL reconstruction is not a straightforward procedure. We describe a new method in which the centrum of the femoral tunnel is marked with an awl and a laser beam-guided technique is used to place the tibial pin. This procedure allows us to mark the desired location of the femoral tunnel before drilling the tibial bone tunnel when using the transtibial technique. This is the first report of a laser-guided technique used in arthroscopic surgery. We used a laser beam to determine the location of the femoral tunnel--the anatomic site needed to perform the intra-articular drilling in the tibia. In this technique, a laser pointer is set at the tibial guide, which reflects the laser beam and illuminates the point where the femoral bone tunnel should be made. Our method offers an easy and accurate way to reconfirm the tibial placement before drilling. PMID:19171283

  12. Room-temperature semiconductor detectors for in vivo monitoring of internal contamination.

    PubMed

    Genicot, J L

    1997-12-01

    In vivo monitoring of low-energy X-ray and gamma-ray emitters has always been a difficult task, primarily because of lack of accuracy and the high detection limits of classical techniques. Various types of PIN diodes (diodes with a large intrinsic zone) were tested in the Radiation Protection Department of the Studie Centrum voor Kernenergie, Centre d'étude de l'Energie Nucléaire (Mol, Belgium) in the measurement of radioactive body burden by direct methods. Current research is oriented toward the use of room-temperature diodes for the detection of low-energy photons escaping the body. In this paper, a new counting technique that involves a portable jacket containing the diodes is described. The system uses silicon diodes and is used out of shielding room in order to be near the contamination. With this method rapid analysis and long counting times are possible, stress is reduced, and medical treatment can be optimized. CdZnTe detectors were also evaluated for this measurement technique but this type of detector is better adapted for counting inside a shielding room. The improvement of the accuracy of the measurement, taking into account the effect of the ribs, is described here, as well the associated electronics necessary for this type of counting. PMID:9467055

  13. Genomic ancestry of the American puma (Puma concolor).

    PubMed

    Culver, M; Johnson, W E; Pecon-Slattery, J; O'Brien, S J

    2000-01-01

    Puma concolor, a large American cat species, occupies the most extensive range of any New World terrestrial mammal, spanning 110 degrees of latitude from the Canadian Yukon to the Straits of Magellan. Until the recent Holocene, pumas coexisted with a diverse array of carnivores including the American lion (Panthera atrox), the North American cheetah (Miracynonyx trumani), and the saber toothed tiger (Smilodon fatalis). Genomic DNA specimens from 315 pumas of specified geographic origin (261 contemporary and 54 museum specimens) were collected for molecular genetic and phylogenetic analyses of three mitochondrial gene sequences (16S rRNA, ATPase-8, and NADH-5) plus composite microsatellite genotypes (10 feline loci). Six phylogeographic groupings or subspecies were resolved, and the entire North American population (186 individuals from 15 previously named subspecies) was genetically homogeneous in overall variation relative to central and South American populations. The marked uniformity of mtDNA and a reduction in microsatellite allele size expansion indicates that North American pumas derive from a recent (late Pleistocene circa 10,000 years ago) replacement and recolonization by a small number of founders who themselves originated from a centrum of puma genetic diversity in eastern South America 200,000-300,000 years ago. The recolonization of North American pumas was coincident with a massive late Pleistocene extinction event that eliminated 80% of large vertebrates in North America and may have extirpated pumas from that continent as well. PMID:10833043

  14. Mammoths and Humans as Late Pleistocene Contemporaries on Santa Rosa Island, Channel Islands National Park, California.

    NASA Astrophysics Data System (ADS)

    Agenbroad, L. D.; Johnson, J.; Morris, D.; Stafford, T. W.

    2007-05-01

    AMS radiocarbon dating of a pygmy mammoth (Mammuthus exilis) thoracic vertebra and associated charcoal has provided evidence for the contemporaneity of the pygmy mammoth and early human remains on Santa Rosa Island, Channel Islands National Park, California. Charcoal associated with the vertebra dated 11,010 ±70 RC yr B.P. (B-133594). That date was significantly close to the extinction date for continental mammoths to warrant a date directly on the bone. The vertebral centrum was drilled and submitted for bone collagen dating by Stafford. The resultant date was 11,030 ±50 RC yr. B P (CAMS-71697), only 20 14C years older than the charcoal date. The significance of the dates was immediately apparent, because a date from human remains from the Arlington Springs Site (CA-SRI-173), Santa Rosa Island was 10,960 ±80 RC yr B.P. (CAMS-16810) (Johnson et al., 1999) - a date nearly identical with the M. exilis measurement. The contemporaneity of the mammoth bone date and human bone date indicates that mammoths were still extant on the islands when humans arrived. These data are from only one mammoth and one human ... more research needs to be done on the mammoth and human remains on the island. Was the contemporaneity coincidence, or the prelude to extinction?

  15. All solid-state diode pumped Nd:YAG MOPA with stimulated Brillouin phase conjugate mirror

    NASA Astrophysics Data System (ADS)

    Offerhaus, H. L.; Godfried, H. P.; Witteman, W. J.

    1996-02-01

    At the Nederlands Centrum voor Laser Research (NCLR) a 1 kHz diode-pumped Nd:YAG Master Oscillator Power Amplifier (MOPA) chain with a Stimulated Brillouin Scattering (SBS) Phase Conjugate mirror is designed and operated. A small Brewster angle Nd:YAG slab (2 by 2 by 20 mm) is side pumped with 200 μs diode pulses in a stable oscillator. The oscillator is Q-switched and injection seeded with a commercial diode pumped single frequency CW Nd:YAG laser. The output consists of single-transverse, single-longitudinal mode 25 ns FWHM-pulses at 1064 nm. The oscillator slab is imaged on a square aperture that transmits between 3 and 2 mJ (at 100 and 400 Hz, resp.) The aperture is subsequently imaged four times in the amplifier. The amplifier is a 3 by 6 by 60 mm Brewster angle zig-zag slab, pumped by an 80-bar diode stack with pulses up to 250 μs. After the second pass the light is focused in two consecutive cells containing Freon-113 for wave-front reversal in an oscillator/amplifier-setup with a reflectivity of 60%. The light then passes through the amplifier twice more to produce 20 W (at 400 Hz) of output with near diffraction limited beam quality. To increase the output to 50 W at 1 kHz thermal lensing in the oscillator will be reduced.

  16. Individual 3D region-of-interest atlas of the human brain: knowledge-based class image analysis for extraction of anatomical objects

    NASA Astrophysics Data System (ADS)

    Wagenknecht, Gudrun; Kaiser, Hans-Juergen; Sabri, Osama; Buell, Udalrich

    2000-06-01

    After neural network-based classification of tissue types, the second step of atlas extraction is knowledge-based class image analysis to get anatomically meaningful objects. Basic algorithms are region growing, mathematical morphology operations, and template matching. A special algorithm was designed for each object. The class label of each voxel and the knowledge about the relative position of anatomical objects to each other and to the sagittal midplane of the brain can be utilized for object extraction. User interaction is only necessary to define starting, mid- and end planes for most object extractions and to determine the number of iterations for erosion and dilation operations. Extraction can be done for the following anatomical brain regions: cerebrum; cerebral hemispheres; cerebellum; brain stem; white matter (e.g., centrum semiovale); gray matter [cortex, frontal, parietal, occipital, temporal lobes, cingulum, insula, basal ganglia (nuclei caudati, putamen, thalami)]. For atlas- based quantification of functional data, anatomical objects can be convoluted with the point spread function of functional data to take into account the different resolutions of morphological and functional modalities. This method allows individual atlas extraction from MRI image data of a patient without the need of warping individual data to an anatomical or statistical MRI brain atlas.

  17. Two new dwarfgobies (Teleostei: Gobiidae) from the Ryukyu Islands, Japan: Eviota flavipinnata and Eviota rubrimaculata.

    PubMed

    Suzuki, Toshiyuki; Greenfield, David W; Motomura, Hiroyuki

    2015-01-01

    Two new species of Eviota from Yoron Island, the Ryukyu Islands, Japan, are described. Both species belong to the cephalic sensory-canal pore system pattern 2 (lacking only the H [IT] pore); have some pectoral-fin rays branched; have a dorsal/anal-fin formula of 9/8; no dark spot over the ural centrum; no prominent distinct dark spots on the pectoral-fin base; no postocular spots; and no strong dark spots on the caudal fin. The species share the most characters with E. afelei, E. bimaculata and E. punctulata, but differ from Eviota afelei and E. punctulata by having two versus three dark marks over the anal-fin base, and from Eviota bimaculata by lacking the two dark, prominent occipital spots present in that species. Both species differ from all other described species of Eviota in fresh coloration. Eviota flavipinnata has bright golden-yellow dorsal fins and an orange anal fin, and a fifth pelvic-fin ray that is 12% the length of the fourth ray. Eviota rubrimaculata has clear dorsal fins with red spots, large red spots on the body, and lacks the fifth pelvic-fin ray. PMID:26623818

  18. Redescription of the rare species Podospongia loveni (Porifera) from the Cantabrian Sea

    NASA Astrophysics Data System (ADS)

    Cristobo, Javier; Ríos, Pilar; Sánchez, Francisco; Anadón, Nuria

    2009-05-01

    Podospongia [du Bocage, B., 1869. Eponges siliceuses nouvelles du Portugal et de l'Île Saint-Iago (Archipel de Cap-Vert). Jornal de Sciencias mathematicas, physicas e naturais 2, 159-162], which at present includes only five species, is a rare genus generally found in deeper waters down to 600 m depth from Natal coast in South Africa, to New Caledonia, the Central and North Atlantic and the Mediterranean Sea. Species of this genus are characterised by a choanosomal skeleton composed of tracts of megascleres radiating from a centrum and stipitate body. Microscleres are spinorhabds and aciculospinorhabds packed in a vertical arrangement in the ectosome and scattered throughout choanosome. As a result of two oceanographic projects (Ecomarg, date; Cocace, date) on the continental shelf of the Cantabrian Sea, ten stipitate sponge specimens were collected and assigned to Podospongia loveni [du Bocage, B., 1869. Eponges siliceuses nouvelles du Portugal et de l'Île Saint-Iago (Archipel de Cap-Vert). Jornal de Sciencias mathematicas, physicas e naturais 2, 159-162]. Since the holotype was destroyed [Kelly, M., Samaai, T., 2002. Family Podospongiidae de Laubenfels, 1936. In: Hooper, J.N.A., Soest, RW.M., (Eds.), Systema Porifera: A Guide to the Classification of Sponges, New York, pp. 694-702] and with the existence of several specimens from a close region, we hereby redescribe this species. scanning electron microscopy pictures of the spicules and skeletal architecture of P. loveni are for the first time provided.

  19. An inventory of the phlebotomine sandflies (Diptera: Psychodidae) found in the Turkish province of Konya.

    PubMed

    Yaman, M; Dik, B

    2006-04-01

    Between the April and October of 1997, the sandflies in six areas (Centrum, Altinekin, Kadinhani, Cumra, Beysehir and Bozkir) of the Turkish province of Konya, in Central Anatolia, were surveyed. All the sandflies were caught close to houses, on sticky-paper traps placed in barns used by livestock. All 127 specimens of Sergentomyia collected were either S. theodori (86.6%) or S. dentata (13.4%). The other 2017 sandflies caught represented 12 species of Phlebotomus - mostly P. papatasi (78.4%) or P. halepensis (10.9%), with P. sergenti (3.8%), P. simici (2.2%), P. kandelakii (1.6%), P. similis (0.9%), P. jacusieli (0.5%), P. neglectus (0.4%), P. transcaucasicus (0.3%), P. syriacus (0.3%), P. kyreniae (0.3%) and P. balcanicus (0.3%) relatively rare. Most (87%) of the flies were male. This represents the first report of P. transcaucasicus in Turkey. In addition, P. syriacus, P. neglectus, P. similis and S. dentata have not been detected before in Central Anatolia. PMID:16630384

  20. Multiple Organ Involvement with Hydatid Cysts

    PubMed Central

    Sabouni, F; Ferdosian, F; Mamishi, S; Nejat, F; Monnajemzadeh, M; Rezaei, N

    2010-01-01

    Hydatid disease is the most common infections worldwide, but it rarely involves multiple organs. Herein, a 12-year-old boy is presented, who was admitted to Children's Medical Center, Tehran University of Medical Sciences, Tehran, Iran with symptoms of irritability, sleepless, and weakness of the extremities. Patient's brain computed tomography (CT) scan with contrast media showed large multilocular cystic lesions in right temporal lobe associated with two other smaller similar cystic lesions in centrum semiovale bilaterally. Abdominal sonography revealed intestinal mesenteric and a cardiac cyst. Abdomino-pelvic CT scan showed a cyst medial to the cecum and a cortical cyst in the left kidney as well as a heart cyst. The echocardiography confirmed hydatid cysts at apical and interventricular septum. Serology test was positive for hydatid cyst. Albendazole and praziquantel were started for the patient immediately and right temporal lobe lesions were removed via neurosurgery intervention. After one month, cardiac and mesenteric cysts were operated during two separate surgeries. Pathologic findings of all cysts were compatible with hydatid cyst. Cystic hydatidosis should be suspected in any cystic mass, whilst prompt diagnosis and appropriate treatments are the keys in management of affected patients. PMID:22347246