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Sample records for coastal subseafloor sediments

  1. Microbial Communities Associated with Geological Horizons in Coastal Subseafloor Sediments from the Sea of Okhotsk

    PubMed Central

    Inagaki, Fumio; Suzuki, Masae; Takai, Ken; Oida, Hanako; Sakamoto, Tatsuhiko; Aoki, Kaori; Nealson, Kenneth H.; Horikoshi, Koki

    2003-01-01

    Microbial communities from a subseafloor sediment core from the southwestern Sea of Okhotsk were evaluated by performing both cultivation-dependent and cultivation-independent (molecular) analyses. The core, which extended 58.1 m below the seafloor, was composed of pelagic clays with several volcanic ash layers containing fine pumice grains. Direct cell counting and quantitative PCR analysis of archaeal and bacterial 16S rRNA gene fragments indicated that the bacterial populations in the ash layers were approximately 2 to 10 times larger than those in the clays. Partial sequences of 1,210 rRNA gene clones revealed that there were qualitative differences in the microbial communities from the two different types of layers. Two phylogenetically distinct archaeal assemblages in the Crenarchaeota, the miscellaneous crenarchaeotic group and the deep-sea archaeal group, were the most predominant archaeal 16S rRNA gene components in the ash layers and the pelagic clays, respectively. Clones of 16S rRNA gene sequences from members of the gamma subclass of the class Proteobacteria dominated the ash layers, whereas sequences from members of the candidate division OP9 and the green nonsulfur bacteria dominated the pelagic clay environments. Molecular (16S rRNA gene sequence) analysis of 181 isolated colonies revealed that there was regional proliferation of viable heterotrophic mesophiles in the volcanic ash layers, along with some gram-positive bacteria and actinobacteria. The porous ash layers, which ranged in age from tens of thousands of years to hundreds of thousands of years, thus appear to be discrete microbial habitats within the coastal subseafloor clay sediment, which are capable of harboring microbial communities that are very distinct from the communities in the more abundant pelagic clays. PMID:14660370

  2. Oxic and Anoxic Regions of Subseafloor Sediment

    NASA Astrophysics Data System (ADS)

    D'Hondt, S.; Pockalny, R. A.; Spivack, A. J.; Inagaki, F.; Murray, R. W.; Adhikari, R. R.; Gribsholt, B.; Kallmeyer, J.; McKinley, C. C.; Morono, Y.; Røy, H.; Sauvage, J.; Ziebis, W.

    2015-12-01

    Dissolved oxygen content defines two broad categories of subseafloor sediment. In areas with high rates of microbial respiration, most of the sediment column is anoxic and active anaerobic microbial communities are present for hundreds of meters or more below the seafloor. In these regions, O2 and aerobic communities penetrate only millimeters to centimeters into the sediment from the sediment-water interface. In some areas of active fluid flow through the underlying basalt, O2 may also penetrate meters upward into the sediment from the basalt. In areas with low sedimentary respiration, O2 and aerobic communities penetrate tens of meters downward from the seafloor and may persist throughout the entire sediment column. IODP Expedition 329 showed that microbial cells and aerobic respiration persist through the entire sediment sequence (to depths of at least 75 meters below seafloor) in the South Pacific Gyre. Extrapolating from these results and a global relationship of O2 penetration depth to sedimentation rate and sediment thickness, we suggest that oxygen and aerobic communities occur throughout the entire sediment sequence in 15-44% of the Pacific and 9-37% of the global seafloor. Subduction of sediment from largely anoxic regions and subduction of sediment and basalt from fully oxic regions are respectively sources of reduced and oxidized material to the mantle. The balance between oxic and anoxic regions has presumably changed considerably throughout Earth history. Regions with largely anoxic sediment and regions with fully oxic sediment present fundamentally different opportunities for understanding of (i) paleoceanographic history and (ii) the nature of microbial life under extreme energy limitations.

  3. Global distribution of microbial abundance and biomass in subseafloor sediment

    PubMed Central

    Kallmeyer, Jens; Pockalny, Robert; Adhikari, Rishi Ram; Smith, David C.; D’Hondt, Steven

    2012-01-01

    The global geographic distribution of subseafloor sedimentary microbes and the cause(s) of that distribution are largely unexplored. Here, we show that total microbial cell abundance in subseafloor sediment varies between sites by ca. five orders of magnitude. This variation is strongly correlated with mean sedimentation rate and distance from land. Based on these correlations, we estimate global subseafloor sedimentary microbial abundance to be 2.9⋅1029 cells [corresponding to 4.1 petagram (Pg) C and ∼0.6% of Earth’s total living biomass]. This estimate of subseafloor sedimentary microbial abundance is roughly equal to previous estimates of total microbial abundance in seawater and total microbial abundance in soil. It is much lower than previous estimates of subseafloor sedimentary microbial abundance. In consequence, we estimate Earth’s total number of microbes and total living biomass to be, respectively, 50–78% and 10–45% lower than previous estimates. PMID:22927371

  4. Global Distribution of Microbial Abundance and Biomass in Subseafloor Sediment

    NASA Astrophysics Data System (ADS)

    Kallmeyer, J.; Pockalny, R. A.; Adhikari, R. R.; Smith, D. C.; D'Hondt, S. L.

    2012-12-01

    Previously published cell counts were mostly from ocean margins and the eastern equatorial Pacific. Cell counts from these environments are generally similar from site to site and decrease logarithmically with sediment depth, although there can be sharp peaks of high cell densities in zones of anaerobic methane-oxidation. Recent counts from the South Pacific Gyre and the North Pacific Gyre are several orders of magnitude lower and show a more rapid decrease with depth than all previously published datasets. With these new data available, total microbial cell abundance in subseafloor sediment varies between sites by ca. five orders of magnitude. The differences between cell counts from ocean margins and upwelling areas and cell counts from oceanic gyres raise three questions. First, how does the abundance of microbes in subseafloor sediment vary throughout the world ocean? Second, what property or properties are likely to control that variation? Third, how does this variation affect estimates of total subseafloor sedimentary biomass and Earth's total biomass? To address these questions, we compiled our cell counts from the South Pacific Gyre, the North Pacific Gyre and the eastern equatorial Pacific Ocean with previously published counts and parameterized the cell distribution at each site and determined two parameters, (i) cell concentration at 1 mbsf and (ii) rate of decrease in cell counts with depth. Both parameters are strongly correlated with mean sedimentation rate and distance to shore. Based on these correlations, we estimate global subseafloor sedimentary microbial abundance to be 2.9*1029 cells (corresponding to 4.1 Pg C and ~0.6% of Earth's total living biomass). This estimate of subseafloor sedimentary microbial abundance is roughly equal to previous estimates of total microbial abundance in seawater and total microbial abundance in soil. It is much lower than previous estimates of subseafloor sedimentary microbial abundance. In consequence, we estimate

  5. Relationship of Bacterial Richness to Organic Degradation Rate and Sediment Age in Subseafloor Sediment

    PubMed Central

    Walsh, Emily A.; Kirkpatrick, John B.; Pockalny, Robert; Sauvage, Justine; Spivack, Arthur J.; Murray, Richard W.; Sogin, Mitchell L.

    2016-01-01

    ABSTRACT Subseafloor sediment hosts a large, taxonomically rich, and metabolically diverse microbial ecosystem. However, the factors that control microbial diversity in subseafloor sediment have rarely been explored. Here, we show that bacterial richness varies with organic degradation rate and sediment age. At three open-ocean sites (in the Bering Sea and equatorial Pacific) and one continental margin site (Indian Ocean), richness decreases exponentially with increasing sediment depth. The rate of decrease in richness with increasing depth varies from site to site. The vertical succession of predominant terminal electron acceptors correlates with abundance-weighted community composition but does not drive the vertical decrease in richness. Vertical patterns of richness at the open-ocean sites closely match organic degradation rates; both properties are highest near the seafloor and decline together as sediment depth increases. This relationship suggests that (i) total catabolic activity and/or electron donor diversity exerts a primary influence on bacterial richness in marine sediment and (ii) many bacterial taxa that are poorly adapted for subseafloor sedimentary conditions are degraded in the geologically young sediment, where respiration rates are high. Richness consistently takes a few hundred thousand years to decline from near-seafloor values to much lower values in deep anoxic subseafloor sediment, regardless of sedimentation rate, predominant terminal electron acceptor, or oceanographic context. IMPORTANCE Subseafloor sediment provides a wonderful opportunity to investigate the drivers of microbial diversity in communities that may have been isolated for millions of years. Our paper shows the impact of in situ conditions on bacterial community structure in subseafloor sediment. Specifically, it shows that bacterial richness in subseafloor sediment declines exponentially with sediment age, and in parallel with organic-fueled oxidation rate. This result

  6. Bacterial dominance in subseafloor sediments characterized by methane hydrates

    USGS Publications Warehouse

    Briggs, Brandon R.; Inagaki, Fumio; Morono, Yuki; Futagami, Taiki; Huguet, Carme; Rosell-Mele, Antoni; Lorenson, T.D.; Colwell, Frederick S.

    2015-01-01

    The degradation of organic carbon in subseafloor sediments on continental margins contributes to the largest reservoir of methane on Earth. Sediments in the Andaman Sea are composed of ~ 1% marine-derived organic carbon and biogenic methane is present. Our objective was to determine microbial abundance and diversity in sediments that transition the gas hydrate occurrence zone (GHOZ) in the Andaman Sea. Microscopic cell enumeration revealed that most sediment layers harbored relatively low microbial abundance (103–105 cells cm−3). Archaea were never detected despite the use of both DNA- and lipid-based methods. Statistical analysis of terminal restriction fragment length polymorphisms revealed distinct microbial communities from above, within, and below the GHOZ, and GHOZ samples were correlated with a decrease in organic carbon. Primer-tagged pyrosequences of bacterial 16S rRNA genes showed that members of the phylum Firmicutes are predominant in all zones. Compared with other seafloor settings that contain biogenic methane, this deep subseafloor habitat has a unique microbial community and the low cell abundance detected can help to refine global subseafloor microbial abundance.

  7. Human-associated fungi in deep subseafloor sediment?

    NASA Astrophysics Data System (ADS)

    Fulfer, V. M.; Kirkpatrick, J. B.; D'Hondt, S.

    2015-12-01

    Recent studies have reported fungi in marine sediment samples from depths as great as 1740 meters below seafloor (mbsf) (Rédou et al., 2014). Such studies have utilized a variety of techniques to identify fungi, including cultivation of isolates, amplicon sequencing, and metagenomics. Six recent studies of marine sediment collectively identify nearly 100 fungal taxa at the genus and species levels (Damare et al., 2006; Lai et al., 2007; Edgcomb et al., 2010; Singh et al., 2010; Orsi et al., 2013; Rédou et al., 2014). Known marine taxa are rarely identified by these studies. For individual studies with more than two taxa, between 16% and 57% of the fungal taxa are human microflora or associated with human environments (e.g., human skin or indoor air). For example, three of the six studies identified Malassezia species that are common skin inhabitants of humans and dogs. Although human-associated taxa have been identified in both shallow and deep sediment, they pose a particularly acute problem for deep subseafloor samples, where claims of a eukaryotic deep biosphere are most striking; depending on the study, 25% to 38% of species identified in sediment taken at depths greater than 40 meters are human-associated. Only one to three species have been reported from each of the four samples taken at depths greater than one km (eight species total; Rédou et al., 2014). Of these eight species, three are human-associated. This ubiquity of human-associated microflora is very problematic for interpretations of an indigenous deep subseafloor fungal community; either human-associated taxa comprise a large fraction of marine sedimentary fungi, or sample and analytical contamination is so widespread that the extent and ubiquity of a deep subseafloor fungal community remains uncertain. This highlights the need for stringent quality control measures throughout coring, sampling, and recovery of marine sediment, and when cultivating, extracting, and/or sequencing fungi from

  8. Viral activities and life cycles in deep subseafloor sediments.

    PubMed

    Engelhardt, Tim; Orsi, William D; Jørgensen, Bo Barker

    2015-12-01

    Viruses are highly abundant in marine subsurface sediments and can even exceed the number of prokaryotes. However, their activity and quantitative impact on microbial populations are still poorly understood. Here, we use gene expression data from published continental margin subseafloor metatranscriptomes to qualitatively assess viral diversity and activity in sediments up to 159 metres below seafloor (mbsf). Mining of the metatranscriptomic data revealed 4651 representative viral homologues (RVHs), representing 2.2% of all metatranscriptome sequence reads, which have close translated homology (average 77%, range 60-97% amino acid identity) to viral proteins. Archaea-infecting RVHs are exclusively detected in the upper 30 mbsf, whereas RVHs for filamentous inoviruses predominate in the deepest sediment layers. RVHs indicative of lysogenic phage-host interactions and lytic activity, notably cell lysis, are detected at all analysed depths and suggest a dynamic virus-host association in the marine deep biosphere studied here. Ongoing lytic viral activity is further indicated by the expression of clustered, regularly interspaced, short palindromic repeat-associated cascade genes involved in cellular defence against viral attacks. The data indicate the activity of viruses in subsurface sediment of the Peruvian margin and suggest that viruses indeed cause cell mortality and may play an important role in the turnover of subseafloor microbial biomass. PMID:26109514

  9. Distributions of microbial activities in deep subseafloor sediments

    NASA Technical Reports Server (NTRS)

    D'Hondt, Steven; Jorgensen, Bo Barker; Miller, D. Jay; Batzke, Anja; Blake, Ruth; Cragg, Barry A.; Cypionka, Heribert; Dickens, Gerald R.; Ferdelman, Timothy; Hinrichs, Kai-Uwe; Holm, Nils G.; Mitterer, Richard; Spivack, Arthur; Wang, Guizhi; Bekins, Barbara; Engelen, Bert; Ford, Kathryn; Gettemy, Glen; Rutherford, Scott D.; Sass, Henrik; Skilbeck, C. Gregory; Aiello, Ivano W.; Guerin, Gilles; House, Christopher H.; Inagaki, Fumio

    2004-01-01

    Diverse microbial communities and numerous energy-yielding activities occur in deeply buried sediments of the eastern Pacific Ocean. Distributions of metabolic activities often deviate from the standard model. Rates of activities, cell concentrations, and populations of cultured bacteria vary consistently from one subseafloor environment to another. Net rates of major activities principally rely on electron acceptors and electron donors from the photosynthetic surface world. At open-ocean sites, nitrate and oxygen are supplied to the deepest sedimentary communities through the underlying basaltic aquifer. In turn, these sedimentary communities may supply dissolved electron donors and nutrients to the underlying crustal biosphere.

  10. Diversity of actinomycetes isolated from subseafloor sediments after prolonged low-temperature storage.

    PubMed

    Ulanova, Dana; Goo, Kian-Sim

    2015-05-01

    Subseafloor sediments present an untapped source of novel bacterial species with industrially important bioactivities. Subseafloor core samples collected during the Integrated Ocean Drilling Program Expeditions 315, 316, and 331 and stored in Kochi Core Center at -80 °C for 1 to 4 years were used for cultivation-based study of viable actinomycetes. In total, more than 100 actinomycete-like colonies were isolated from two deep-frozen subseafloor sediment samples. Isolated actinomycetes showed close similarity to known Actinotalea, Dietzia, Gordonia, Isoptericola, Microbacterium, Nocardia, Rhodococcus, Pseudonocardia, Streptomyces, and Tsukamurella species and were halotolerant. Bioactivity assays revealed that two of the isolates were producing potent antibacterial compound(s) and one isolate was having antifungal activity. Our study demonstrated that deep-frozen subseafloor core samples could be a potential source of viable actinomycetes, which may be used in drug discovery. PMID:25381631

  11. Cultivation of methanogenic community from subseafloor sediments using a continuous-flow bioreactor

    PubMed Central

    Imachi, Hiroyuki; Aoi, Ken; Tasumi, Eiji; Saito, Yumi; Yamanaka, Yuko; Saito, Yayoi; Yamaguchi, Takashi; Tomaru, Hitoshi; Takeuchi, Rika; Morono, Yuki; Inagaki, Fumio; Takai, Ken

    2011-01-01

    Microbial methanogenesis in subseafloor sediments is a key process in the carbon cycle on the Earth. However, the cultivation-dependent evidences have been poorly demonstrated. Here we report the cultivation of a methanogenic microbial consortium from subseafloor sediments using a continuous-flow-type bioreactor with polyurethane sponges as microbial habitats, called down-flow hanging sponge (DHS) reactor. We anaerobically incubated methane-rich core sediments collected from off Shimokita Peninsula, Japan, for 826 days in the reactor at 10 °C. Synthetic seawater supplemented with glucose, yeast extract, acetate and propionate as potential energy sources was provided into the reactor. After 289 days of operation, microbiological methane production became evident. Fluorescence in situ hybridization analysis revealed the presence of metabolically active microbial cells with various morphologies in the reactor. DNA- and RNA-based phylogenetic analyses targeting 16S rRNA indicated the successful growth of phylogenetically diverse microbial components during cultivation in the reactor. Most of the phylotypes in the reactor, once it made methane, were more closely related to culture sequences than to the subsurface environmental sequence. Potentially methanogenic phylotypes related to the genera Methanobacterium, Methanococcoides and Methanosarcina were predominantly detected concomitantly with methane production, while uncultured archaeal phylotypes were also detected. Using the methanogenic community enrichment as subsequent inocula, traditional batch-type cultivations led to the successful isolation of several anaerobic microbes including those methanogens. Our results substantiate that the DHS bioreactor is a useful system for the enrichment of numerous fastidious microbes from subseafloor sediments and will enable the physiological and ecological characterization of pure cultures of previously uncultivated subseafloor microbial life. PMID:21654849

  12. Variance and potential niche separation of microbial communities in subseafloor sediments off Shimokita Peninsula, Japan.

    PubMed

    Nunoura, Takuro; Takaki, Yoshihiro; Shimamura, Shigeru; Kakuta, Jungo; Kazama, Hiromi; Hirai, Miho; Masui, Noriaki; Tomaru, Hitoshi; Morono, Yuki; Imachi, Hiroyuki; Inagaki, Fumio; Takai, Ken

    2016-06-01

    Subseafloor pelagic sediments with high concentrations of organic matter form habitats for diverse microorganisms. Here, we determined depth profiles of genes for SSU rRNA, mcrA, dsrA and amoA from just beneath the seafloor to 363.3 m below the seafloor (mbsf) using core samples obtained from the forearc basin off the Shimokita Peninsula. The molecular profiles were combined with data on lithostratigraphy, depositional age, sedimentation rate and pore-water chemistry. The SSU rRNA gene tag structure and diversity changed at around the sulfate-methane transition zone (SMTZ), whereas the profiles varied further with depth below the SMTZ, probably in connection with the variation in pore-water chemistry. The depth profiles of diversity and abundance of dsrA, a key gene for sulfate reduction, suggested the possible niche separations of sulfate-reducing populations, even below the SMTZ. The diversity and abundance patterns of mcrA, a key gene for methanogenesis/anaerobic methanotrophy, suggested a stratified distribution and separation of anaerobic methanotrophy and hydrogenotrophic or methylotrophic methanogensis below the SMTZ. This study provides novel insights into the relationships between the composition and function of microbial communities and the chemical environment in the nutrient-rich continental margin subseafloor sediments, which may result in niche separation and variability in subseafloor microbial populations. PMID:26486095

  13. Distribution of dehalogenation activity in subseafloor sediments of the Nankai Trough subduction zone

    PubMed Central

    Futagami, Taiki; Morono, Yuki; Terada, Takeshi; Kaksonen, Anna H.; Inagaki, Fumio

    2013-01-01

    Halogenated organic matter buried in marine subsurface sediment may serve as a source of electron acceptors for anaerobic respiration of subseafloor microbes. Detection of a diverse array of reductive dehalogenase-homologous (rdhA) genes suggests that subseafloor organohalide-respiring microbial communities may play significant ecological roles in the biogeochemical carbon and halogen cycle in the subseafloor biosphere. We report here the spatial distribution of dehalogenation activity in the Nankai Trough plate-subduction zone of the northwest Pacific off the Kii Peninsula of Japan. Incubation experiments with slurries of sediment collected at various depths and locations showed that degradation of several organohalides tested only occurred in the shallow sedimentary basin, down to 4.7 metres below the seafloor, despite detection of rdhA in the deeper sediments. We studied the phylogenetic diversity of the metabolically active microbes in positive enrichment cultures by extracting RNA, and found that Desulfuromonadales bacteria predominate. In addition, for the isolation of genes involved in the dehalogenation reaction, we performed a substrate-induced gene expression screening on DNA extracted from the enrichment cultures. Diverse DNA fragments were obtained and some of them showed best BLAST hit to known organohalide respirers such as Dehalococcoides, whereas no functionally known dehalogenation-related genes such as rdhA were found, indicating the need to improve the molecular approach to assess functional genes for organohalide respiration. PMID:23479745

  14. Phylogenetic Diversity of aprA Genes in Subseafloor Sediments on the Northwestern Pacific Margin off Japan.

    PubMed

    Aoki, Masataka; Kakiuchi, Ryota; Yamaguchi, Takashi; Takai, Ken; Inagaki, Fumio; Imachi, Hiroyuki

    2015-01-01

    Markedly diverse sequences of the adenosine-5'-phosphosulfate reductase alpha subunit gene (aprA), which encodes a key enzyme in microbial sulfate reduction and sulfur oxidation, were detected in subseafloor sediments on the northwestern Pacific off Japan. The aprA gene sequences were grouped into 135 operational taxonomic units (90% sequence identity), including genes related to putative sulfur-oxidizing bacteria predominantly detected in sulfate-depleted deep sediments. Our results suggest that microbial ecosystems in the subseafloor biosphere have phylogenetically diverse genetic potentials to mediate cryptic sulfur cycles in sediments, even where sulfate is rarely present. PMID:26156553

  15. In situ time-series measurements of subseafloor sediment properties

    USGS Publications Warehouse

    Wheatcroft, R.A.; Stevens, A.W.; Johnson, R.V.

    2007-01-01

    The capabilities and diversity of subsurface sediment sensors lags significantly from what is available for the water column, thereby limiting progress in understanding time-dependent seabed exchange and high-frequency acoustics. To help redress this imbalance, a new instrument, the autonomous sediment profiler (ASP), is described herein. ASP consists of a four-electrode, Wenner-type resistivity probe and a thermistor that log data at 0.1-cm vertical intervals over a 58-cm vertical profile. To avoid resampling the same spot on the seafloor, the probes are moved horizontally within a 20 times 100-cm-2 area in one of three preselected patterns. Memory and power capacities permit sampling at hourly intervals for up to 3-mo duration. The system was tested in a laboratory tank and shown to be able to resolve high-frequency sediment consolidation, as well as changes in sediment roughness. In a field test off the southern coast of France, the system collected resistivity and temperature data at hourly intervals for 16 d. Coupled with environmental data collected on waves, currents, and suspended sediment, the ASP is shown to be useful for understanding temporal evolution of subsurface sediment porosity, although no large depositional or erosional events occurred during the deployment. Following a rapid decrease in bottom-water temperature, the evolution of the subsurface temperature field was consistent with the 1-D thermal diffusion equation coupled with advection in the upper 3-4 cm. Collectively, the laboratory and field tests yielded promising results on time-dependent seabed change.

  16. Microbial population, activity, and phylogenetic diversity in the subseafloor core sediment from the Sea of Okhotsk

    NASA Astrophysics Data System (ADS)

    Inagaki, F.; Suzuki, M.; Takai, K.; Nealson, K. H.; Horikoshi, K.

    2002-12-01

    Subseafloor environments has already been recognized as the largest biosphere on the planet Earth, however, the microbial diversity and activity has been still poorly understood, even in their impacts on biogeochemical processes, tectonic settings, and paleoenvironmental events. We demonstrate here the evaluation of microbial community structure and active habitats in deeply buried cold marine sediments collected from the Sea of Okhotsk by a combined use of molecular ecological surveys and culturing assays. The piston core sediment (MD01-2412) was collected by IMAGES (International Marine Global Change Study) Project from the southeastern Okhotsk Sea, June 2001. The total recovered length was about 58m. The lithology of the core sediment was mainly constructed from pelagic clay (PC) and volcanic ash layers (Ash). We collected aseptically the most inside core parts from 16 sections at different depths for microbiological study. The direct count of DAPI-stained cells revealed that the cells in Ash samples were present 1.2 to 2.2 times higher than in PC samples. The quantitative-PCR of 16S rDNA between bacterial and archaeal rDNA suggested that the increased population density in Ash layers was caused by the bacterial components. We studied approximately 650 and 550 sequences from bacterial and archaeal rDNA clone libraries, respectively. The similarity and phylogenetic analyses revealed that the microbial community structures were apparently different between in Ash layers and PC samples. From bacterial rDNA clone libraries, the members within gamma-Proteobacteria such as genera Halomonas, Shewanella, Psychromonas and Methylosinus were predominantly detected in Ash layers whereas the Dehalococcoides group and delta-Proteobacteria were major bacterial components in PC samples. From archaeal libraries, the sequences from Ash and PC samples were affiliated into the clusters represented by the environmental sequences obtained from terrestrial and deep-sea environments

  17. Assessing the Potential for Expression of Metabolically Diverse Genes in Subseafloor Sediments

    NASA Astrophysics Data System (ADS)

    Dick, J. M.; Shock, E.

    2009-12-01

    A combination of geochemical and biochemical processes defines the transition between sulfate reduction and methanogenesis in subseafloor sediments. One line of investigation that promises to help elucidate this transition is metagenomic characterization of the subseafloor sediment column. Analysis of metagenomic data from sediment at the Peru Margin reveals that sequences homologous to known genes in the methanogenic and sulfate reductive pathways can be identified at different depths below the seafloor [1]. However, without metatranscriptomic or metaprotoeomic data it is unclear whether the presence of these genes implies that these metabolic pathways are being utilized. In this study, we describe a theoretical method for assessing the potential for gene expression. Constructing a thermodynamic model for the relative stabilities of proteins depends on knowing the amino acid sequences of the proteins and defining model environments, which can then be compared and refined using geochemical observations. We report the results of a series of stability calculations that are consistent with a greater overall energetic potential for the expression of enzymes for sulfate reduction and methanogenesis at shallow and deep horizons, respectively. The results are also consistent with a decrease in the oxidation state of the pore fluid with depth, which is mirrored in the chemical compositions of the proteins involved in methanogenesis. At sediment near the seafloor, where genes for both sulfate reduction and methanogenesis were identified [1], fluctuations in oxidation state could be responsible for differing levels of expression of these proteins and therefore contribute to a shift to a different metabolic strategy. [1] J. F. Biddle, S. Fitz-Gibbon, S. C. Schuster, J. E. Brenchley and C. H. House. Proc. Natl. Acad. Sci. U.S.A., 105:10583, 2008. Relative stabilities of sulfite reductases ("sulf") and methylene-5,6,7,8-tetrahydromethanopterin dehydrogenases ("meth") that are

  18. Isolation of Sulfate-Reducing Bacteria from Sediments Above the Deep-Subseafloor Aquifer

    PubMed Central

    Fichtel, Katja; Mathes, Falko; Könneke, Martin; Cypionka, Heribert; Engelen, Bert

    2011-01-01

    On a global scale, crustal fluids fuel a large part of the deep-subseafloor biosphere by providing electron acceptors for microbial respiration. In this study, we examined bacterial cultures from sediments of the Juan de Fuca Ridge, Northeast Pacific (IODP Site U1301). The sediments comprise three distinctive compartments: an upper sulfate-containing zone, formed by bottom-seawater diffusion, a sulfate-depleted zone, and a second (∼140 m thick) sulfate-containing zone influenced by fluid diffusion from the basaltic aquifer. In order to identify and characterize sulfate-reducing bacteria, enrichment cultures from different sediment layers were set up, analyzed by molecular screening, and used for isolating pure cultures. The initial enrichments harbored specific communities of heterotrophic microorganisms. Strains affiliated to Desulfosporosinus lacus, Desulfotomaculum sp., and Desulfovibrio aespoeensis were isolated only from the top layers (1.3–9.1 meters below seafloor, mbsf), while several strains of Desulfovibrio indonesiensis and a relative of Desulfotignum balticum were obtained from near-basement sediments (240–262 mbsf). Physiological tests on three selected strains affiliated to Dv. aespoeensis, Dv. indonesiensis, and Desulfotignum balticum indicated that all reduce sulfate with a limited number of short-chain n-alcohols or fatty acids and were able to ferment either ethanol, pyruvate, or betaine. All three isolates shared the capacity of growing chemolithotrophically with H2 as sole electron donor. Strain P23, affiliating with Dv. indonesiensis, even grew autotrophically in the absence of any organic compounds. Thus, H2 might be an essential electron donor in the deep-subseafloor where the availability of organic substrates is limited. The isolation of non-sporeforming sulfate reducers from fluid-influenced layers indicates that they have survived the long-term burial as active populations even after the separation from the seafloor hundreds

  19. Linking Microbial Heterotrophic Activity and Sediment Lithology in Oxic, Oligotrophic Sub-Seafloor Sediments of the North Atlantic Ocean

    PubMed Central

    Picard, Aude; Ferdelman, Timothy G.

    2011-01-01

    Microbial heterotrophic activity was investigated in oxic sub-seafloor sediments at North Pond, a sediment pond situated at 23°N on the western flank of the Mid-Atlantic Ridge. The North Pond sediments underlie the oligotrophic North Atlantic Gyre at 4580-m water depth and cover a 7–8 million-year-old basaltic crust aquifer through which seawater flows. Discrete samples for experimentation were obtained from up to ~9 m-long gravity cores taken at 14 stations in the North Pond area. Potential respiration rates were determined in sediment slurries incubated under aerobic conditions with 14C-acetate. Microbial heterotrophic activity, as defined by oxidation of acetate to CO2 (with O2 as electron acceptor), was detected in all 14 stations and all depths sampled. Potential respiration rates were generally low (<0.2 nmol of respired acetate cm−3 d−1) in the sediment, but indicate that microbial heterotrophic activity occurs in deep-sea, oxic, sub-seafloor sediments. Furthermore, discernable differences in activity existed between sites and within given depth profiles. At seven stations, activity was increased by several orders of magnitude at depth (up to ~12 nmol of acetate respired cm−3 d−1). We attempted to correlate the measures of activity with high-resolution color and element stratigraphy. Increased activities at certain depths may be correlated to variations in the sediment geology, i.e., to the presence of dark clay-rich layers, of sandy layers, or within clay-rich horizons presumably overlying basalts. This would suggest that the distribution of microbial heterotrophic activity in deeply buried sediments may be linked to specific lithologies. Nevertheless, high-resolution microbial examination at the level currently enjoyed by sedimentologists will be required to fully explore this link. PMID:22207869

  20. Subseafloor microbial communities in methane hydrate-bearing sediment at two distinct locations (ODP Leg204) in the cascadia margin.

    PubMed

    Nunoura, Takuro; Inagaki, Fumio; Delwiche, Mark E; Colwell, Frederick S; Takai, Ken

    2008-01-01

    The prokaryotic communities in deep subseafloor sediment collected during Ocean Drilling Program (ODP) Leg 204 from the South Hydrate Ridge (SHR) on the Cascadia Margin were analyzed by 16S rRNA gene clone sequencing and a fluorescent quantitative PCR technique. The microbial communities came from sites with contrasting geological characteristics on the SHR: sites 1244 and 1245 (located on the flank of the ridge, hydrate-rich sediment) and site 1251 (located on the slope basin of SHR, hydrate-poor sediment). The overall copy numbers of the 16S rRNA gene, and the proportion of archaeal 16S rRNA gene in all 16S rRNA gene community in sediment were larger on the slope basin than on the flank of the SHR. Archaeal community structure around the sulfate-methane transition zone at site 1251 (4.5 mbsf) was intensively investigated using two different PCR primer sets. A relatively abundant distribution of the 16S rRNA gene sequences related to mesophilic methanogen of the genus Methanoculleus was identified at a depth of 43.2 mbsf, and suggested that the methanogens occur in relatively shallow zones of sediment. This study demonstrated that the subseafloor microbial communities shown by 16S rRNA gene clone analyses were not directly associated with subseafloor methane hydrate deposits. PMID:21558725

  1. Changes in microbial communities associated with gas hydrates in subseafloor sediments from the Nankai Trough.

    PubMed

    Katayama, Taiki; Yoshioka, Hideyoshi; Takahashi, Hiroshi A; Amo, Miki; Fujii, Tetsuya; Sakata, Susumu

    2016-08-01

    Little is known about the microbial distribution patterns in subseafloor sediments. This study examines microbial diversity and activities in sediments of the Nankai Trough, where biogenic gas hydrates are deposited. Illumina sequencing of 16S rRNA genes revealed that the prokaryotic community structure is correlated with hydrate occurrence and depth but not with the sedimentary facies. The bacterial phyla 'Atribacteria' lineage JS1 and Chloroflexi dominated in all samples, whereas lower taxonomic units of Chloroflexi accounted for community variation related to hydrate saturation. In archaeal communities, 'Bathyarchaeota' was significantly abundant in the hydrate-containing samples, whereas Marine Benthic Group-B dominated in the upper sediments without hydrates. mcrA gene sequences assigned to deeply branching groups and ANME-1 were detected only in hydrate-containing samples. A predominance of hydrogenotrophic methanogens, Methanomicrobiales and Methanobacteriales, over acetoclastic methanogens was found throughout the depth. Incubation tests on hydrate-containing samples with a stable isotope tracer showed anaerobic methane oxidation activities under both low- and seawater-like salinity conditions. These results indicate that the distribution patterns of microorganisms involved in carbon cycling changed with gas hydrate occurrence, possibly because of the previous hydrate dissociation followed by pore water salinity decrease in situ, as previously proposed by a geochemical study at the study site. PMID:27170363

  2. Relationship of subseafloor microbial diversity to sediment age and organic carbon content

    NASA Astrophysics Data System (ADS)

    Walsh, E. A.; Kirkpatrick, J. B.; Sogin, M. L.; D'Hondt, S. L.

    2013-12-01

    Our tag pyrosequencing investigation of four globally distant sites reveals sediment age and total organic carbon content to be significant components in understanding subseafloor diversity. Our sampling locations include two sites from high-productivity regions (Indian Ocean and Bering Sea) and two from moderate-productivity (eastern and central equatorial Pacific Ocean). Sediment from the high-productivity sites has much higher TOC than sediment from the moderate-productivity equatorial sites. We applied a high-resolution 16S V4-V6 tag pyrosequencing approach to 24 bacterial and 17 archaeal samples, totaling 602,502 reads. We identified1,291 archaeal and 15,910 bacterial OTUs (97%) from these reads. We analyzed bacterial samples from all four sites in addition to archaeal samples from our high productivity sites. These high productivity, high TOC sites have a pronounced methane-rich sulfate-free zone at depth from which archaea have been previously considered to dominate (Biddle et al., 2006). At all four locations, microbial diversity is highest near the seafloor and drops rapidly to low but stable values with increasing sediment depth. The depth at which diversity stabilizes varies greatly from site to site, but the age at which it stabilizes is relatively constant. At all four sites, diversity reaches low stable values a few hundred thousand years after sediment deposition. The sites with high total organic carbon (high productivity sites) generally exhibit higher diversity at each sediment age than the sites with lower total organic carbon (moderate-productivity sites). Archaeal diversity is lower than bacterial diversity at every sampled depth. Biddle, J.F., Lipp, J.S., Lever, M.A., Lloyd, K.G., Sørensen, K.B., Anderson, R. et al. (2006) Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. PNAS 103: 3846-3851.

  3. Whole-genome sequence of Sunxiuqinia dokdonensis DH1(T), isolated from deep sub-seafloor sediment in Dokdo Island.

    PubMed

    Lim, Sooyeon; Chang, Dong-Ho; Kim, Byoung-Chan

    2016-09-01

    Sunxiuqinia dokdonensis DH1(T) was isolated from deep sub-seafloor sediment at a depth of 900 m below the seafloor off Seo-do (the west part of Dokdo Island) in the East Sea of the Republic of Korea and subjected to whole genome sequencing on HiSeq platform and annotated on RAST. The nucleotide sequence of this genome was deposited into DDBJ/EMBL/GenBank under the accession LGIA00000000. PMID:27437183

  4. Coastal sediment dynamics in Spitsbergen

    NASA Astrophysics Data System (ADS)

    Deloffre, J.; Lafite, R.; Baltzer, A.; Marlin, C.; Delangle, E.; Dethleff, D.; Petit, F.

    2010-12-01

    In arctic knowledge on coastal sediment dynamics and sedimentary processes is limited. The studied area is located in the microtidal Kongsfjorden glacial fjord on the North-western coast of Spitsbergen in the Artic Ocean (79°N). In this area sediment contributions to the coastal zone is provided by small temporary rivers that flows into the fjord. The objectives of this study are to (i) assess the origin and fate of fine-grained particles (<63µm) from the piedmont glacier to the coastal zone (0-30m depth), (ii) establish the role of this coastal zone in sediment transfer and (iii) identify the impact of sea ice cover on sediment dynamics. The sampling strategy is based on characterization of sediment and SPM (grain-size, X-rays diffraction, SEM images, carbonates and organic matter contents) from the glacier to the coastal zone completed by a bottom-sediment map on the nearshore using side-scan sonar validated with Ekman binge sampling. River inputs (i.e. river plumes) to the coastal zone were punctually followed using CTD (conductivity, temperature, depth and turbidity) profiles. OBS (water level, temperature and turbidity) operating at high-frequency and during at least 1 years (including under sea ice cover) was settled at the mouth of rivers at 10m depth. In the coastal zone the fine-grained sediment deposit is limited to mud patches located at river mouths that originate the piedmont glacier. However a significant amount of sediment originates the coastal glacier located in the eastern part of the fjord via two processes: direct transfer and ice-drop. Results from turbidity measurements show that the sediment dynamics is controlled by river inputs in particular during melting period. During winter sediment resuspension can occurs directly linked to significant wind-events. When the sea ice cover is present (January to April) no sediment dynamics is observed. Sediment processes in the coastal zone of arctic fjords is significant however only a small amount of

  5. Sedimentological imprint on subseafloor microbial communities in Western Mediterranean Sea Quaternary sediments

    NASA Astrophysics Data System (ADS)

    Ciobanu, M.-C.; Rabineau, M.; Droz, L.; Révillon, S.; Ghiglione, J.-F.; Dennielou, B.; Jorry, S.-J.; Kallmeyer, J.; Etoubleau, J.; Pignet, P.; Crassous, P.; Vandenabeele-Trambouze, O.; Laugier, J.; Guégan, M.; Godfroy, A.; Alain, K.

    2012-09-01

    An interdisciplinary study was conducted to evaluate the relationship between geological and paleoenvironmental parameters and the bacterial and archaeal community structure of two contrasting subseafloor sites in the Western Mediterranean Sea (Ligurian Sea and Gulf of Lion). Both depositional environments in this area are well-documented from paleoclimatic and paleooceanographic point of views. Available data sets allowed us to calibrate the investigated cores with reference and dated cores previously collected in the same area, and notably correlated to Quaternary climate variations. DNA-based fingerprints showed that the archaeal diversity was composed by one group, Miscellaneous Crenarchaeotic Group (MCG), within the Gulf of Lion sediments and of nine different lineages (dominated by MCG, South African Gold Mine Euryarchaeotal Group (SAGMEG) and Halobacteria) within the Ligurian Sea sediments. Bacterial molecular diversity at both sites revealed mostly the presence of the classes Alphaproteobacteria, Betaproteobacteria and Gammaproteobacteria within Proteobacteria phylum, and also members of Bacteroidetes phylum. The second most abundant lineages were Actinobacteria and Firmicutes at the Gulf of Lion site and Chloroflexi at the Ligurian Sea site. Various substrates and cultivation conditions allowed us to isolate 75 strains belonging to four lineages: Alpha-, Gammaproteobacteria, Firmicutes and Actinobacteria. In molecular surveys, the Betaproteobacteria group was consistently detected in the Ligurian Sea sediments, characterized by a heterolithic facies with numerous turbidites from a deep-sea levee. Analysis of relative betaproteobacterial abundances and turbidite frequency suggested that the microbial diversity was a result of main climatic changes occurring during the last 20 ka. Statistical direct multivariate canonical correspondence analyses (CCA) showed that the availability of electron acceptors and the quality of electron donors (indicated by age

  6. Hydrocarbons in Washington coastal sediments

    NASA Astrophysics Data System (ADS)

    Prahl, Fredrick G.; Carpenter, Roy

    1984-06-01

    The sources and distributions of polycyclic aromatic hydrocarbons (PAH) and aliphatic hydrocarbons are characterized in seventeen sediments from a highly river-influenced sedimentary environment off the southwestern coast of Washington. The major hydrocarbons are land-derived, introduced as preformed compounds and display long-term stability in sediment cores. A series of PAH of anthropogenic origin and two naturally derived compounds, retene and perylene, dominate the PAH composition in these sediments. Plantwax n-alkanes are the major aliphatic hydrocarbon constituents. Aliphatic hydrocarbons of marine origin, pristane and a series of four acyclic, multibranched C 25 polyolefins, are also observed in many sediments. The concentrations of these marine-derived hydrocarbons decrease to negligible levels rapidly with sediment depth from the sea-sediment interface, suggesting degradation. In general, the major land-derived hydrocarbons are concentrated in the midshelf silt deposit which extends northwestward along the continental shelf from the Columbia River mouth. A quantitatively more minor, natural series of phenanthrene homologs, also of terrestrial origin, is preferentially advected further offshore and deposited in continental slope sediments. These distributions are consistent with recognized particle associations for these compounds and sediment dispersal processes in this coastal environment. Sediment core records suggest the present pattern of dispersal has persisted for at least the past century and possibly since the Late Pleistocene.

  7. Preliminary Insights Into the Interplay Among Oxygen, Organic Carbon, and Microbial Metabolism in North Atlantic Subseafloor Sediment Communities

    NASA Astrophysics Data System (ADS)

    Amenabar, M. J.; Dore, J. E.; Spivack, A. J.; Murray, R. W.; D'Hondt, S.; Boyd, E. S.

    2015-12-01

    . Collectively, this research improves our understanding of the microbial activities present in subseafloor sediment of the deep North Atlantic Ocean and provides new insight into the interplay among O2 and organic carbon and microbial activity, viability, and productivity in deep marine sediments.

  8. Characterization of Metabolically Active Bacterial Populations in Subseafloor Nankai Trough Sediments above, within, and below the Sulfate–Methane Transition Zone

    PubMed Central

    Mills, Heath J.; Reese, Brandi Kiel; Shepard, Alicia K.; Riedinger, Natascha; Dowd, Scot E.; Morono, Yuki; Inagaki, Fumio

    2012-01-01

    A remarkable number of microbial cells have been enumerated within subseafloor sediments, suggesting a biological impact on geochemical processes in the subseafloor habitat. However, the metabolically active fraction of these populations is largely uncharacterized. In this study, an RNA-based molecular approach was used to determine the diversity and community structure of metabolically active bacterial populations in the upper sedimentary formation of the Nankai Trough seismogenic zone. Samples used in this study were collected from the slope apron sediment overlying the accretionary prism at Site C0004 during the Integrated Ocean Drilling Program Expedition 316. The sediments represented microbial habitats above, within, and below the sulfate–methane transition zone (SMTZ), which was observed approximately 20 m below the seafloor (mbsf). Small subunit ribosomal RNA were extracted, quantified, amplified, and sequenced using high-throughput 454 pyrosequencing, indicating the occurrence of metabolically active bacterial populations to a depth of 57 mbsf. Transcript abundance and bacterial diversity decreased with increasing depth. The two communities below the SMTZ were similar at the phylum level, however only a 24% overlap was observed at the genus level. Active bacterial community composition was not confined to geochemically predicted redox stratification despite the deepest sample being more than 50 m below the oxic/anoxic interface. Genus-level classification suggested that the metabolically active subseafloor bacterial populations had similarities to previously cultured organisms. This allowed predictions of physiological potential, expanding understanding of the subseafloor microbial ecosystem. Unique community structures suggest very diverse active populations compared to previous DNA-based diversity estimates, providing more support for enhancing community characterizations using more advanced sequencing techniques. PMID:22485111

  9. Boosting subsurface life: is subseafloor sediment a natural catalyst for radiolytic hydrogen production?

    NASA Astrophysics Data System (ADS)

    Sauvage, J.; Graham, D.; Spivack, A. J.; Dunlea, A. G.; Murray, R. W.; D'Hondt, S.

    2014-12-01

    Naturally occurring production of molecular hydrogen (H2) by water radiolysis may be a fundamentally important source of electron donors (energy) for life in subsurface environments where organic matter is scarce. Previous studies with very high gamma radiation rates and wet mineral phases have reported high H2 production relative to production from water radiolysis in the absence of solid phases. Numerical calculations by other previous studies have predicted enhanced H2 production from seawater radiolysis relative to pure water radiolysis, due to the interaction of anions with hydroxyl radicals. Given these reports, the potential catalytic influences of solid and dissolved chemical phases on radiolytic H2 production need to be carefully quantified in order to fully evaluate the role of radiolytic H2 as a microbial energy source. For such quantification, we undertook gamma-irradiation experiments with pure water, deep ocean water and mixtures (slurries, φ = 0.85) of seawater with: North Pacific abyssal clay and calcareous oozes, coastal sediment, zirconium dioxide, and zeolite. We carried out our experiments at the Rhode Island Nuclear Science Center using a 37Cesium source at low dose rates (up to 0.1 Gy/hr). Our results to date include the following. First, the per-dose radiolytic H2 yield of pure water at low dose rates is directly comparable to the per-dose yield at much higher dose rates (ca. 1 kGy/hr); this result indicates that H2 production rate is linearly related to radiation dose rate across four orders of magnitude. Second, there is no statistically significant difference (90% confidence limit) between the radiolytic H2 yield from pure water and that from seawater; this result rules out influence of abundant seawater salts on H2 yield from water radiolysis. Third, H2 production from a mixture of abyssal clay and seawater is 25% higher than the yield from pure water. This enhanced yield is consistent with catalysis of radiolytic H2 production by

  10. Loktanella cinnabarina sp. nov., isolated from a deep subseafloor sediment, and emended description of the genus Loktanella.

    PubMed

    Tsubouchi, Taishi; Shimane, Yasuhiro; Mori, Kozue; Miyazaki, Masayuki; Tame, Akihiro; Uematsu, Katsuyuki; Maruyama, Tadashi; Hatada, Yuji

    2013-04-01

    A Gram-stain-negative, aerobic, heterotrophic and salt-tolerant bacterium, designated strain LL-001(T), was isolated from a deep subseafloor sediment in Japanese waters. Cells were non-motile rods and colonies were smooth, convex, circular and vermilion. The conditions for growth were 15-35 °C, pH 5.5-7.5 and 1-8 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences confirmed that strain LL-001(T) belonged to the genus Loktanella within the family Rhodobacteraceae of the class Alphaproteobacteria. 16S rRNA gene sequence similarity between strain LL-001(T) and members of the genus Loktanella was 94.5-98.5 %; the highest sequence similarity was with Loktanella hongkongensis UST950701-009P(T). DNA-DNA relatedness between strain LL-001(T) and L. hongkongensis UST950701-009P(T) was 41.5-43.6 %. The DNA G+C content of strain LL-001(T) was 69.3 mol%. On the basis of biochemical features and 16S rRNA gene sequence comparison, strain LL-001(T) is considered to represent a novel species of the genus Loktanella, for which the name Loktanella cinnabarina sp. nov. is proposed. The type strain is LL-001(T) ( = JCM 18161(T) = CECT 8072(T)). The description of the genus Loktanella is also emended. PMID:22843714

  11. A NATIONAL COASTAL ASSESSMENT OF COASTAL SEDIMENT CONDITION

    EPA Science Inventory

    One element of the Environmental Monitoring and Assessment Program's National Coastal Assessment is to estimate the current status, extent, changes and trends in the condition of the Nation's coastal sediments on a national basis. Based on NCA monitoring activities from 1999-2001...

  12. Culturable prokaryotic diversity of deep, gas hydrate sediments: first use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG)

    PubMed Central

    Parkes, R John; Sellek, Gerard; Webster, Gordon; Martin, Derek; Anders, Erik; Weightman, Andrew J; Sass, Henrik

    2009-01-01

    Deep subseafloor sediments may contain depressurization-sensitive, anaerobic, piezophilic prokaryotes. To test this we developed the DeepIsoBUG system, which when coupled with the HYACINTH pressure-retaining drilling and core storage system and the PRESS core cutting and processing system, enables deep sediments to be handled without depressurization (up to 25 MPa) and anaerobic prokaryotic enrichments and isolation to be conducted up to 100 MPa. Here, we describe the system and its first use with subsurface gas hydrate sediments from the Indian Continental Shelf, Cascadia Margin and Gulf of Mexico. Generally, highest cell concentrations in enrichments occurred close to in situ pressures (14 MPa) in a variety of media, although growth continued up to at least 80 MPa. Predominant sequences in enrichments were Carnobacterium, Clostridium, Marinilactibacillus and Pseudomonas, plus Acetobacterium and Bacteroidetes in Indian samples, largely independent of media and pressures. Related 16S rRNA gene sequences for all of these Bacteria have been detected in deep, subsurface environments, although isolated strains were piezotolerant, being able to grow at atmospheric pressure. Only the Clostridium and Acetobacterium were obligate anaerobes. No Archaea were enriched. It may be that these sediment samples were not deep enough (total depth 1126–1527 m) to obtain obligate piezophiles. PMID:19694787

  13. Culturable prokaryotic diversity of deep, gas hydrate sediments: first use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG).

    PubMed

    Parkes, R John; Sellek, Gerard; Webster, Gordon; Martin, Derek; Anders, Erik; Weightman, Andrew J; Sass, Henrik

    2009-12-01

    Deep subseafloor sediments may contain depressurization-sensitive, anaerobic, piezophilic prokaryotes. To test this we developed the DeepIsoBUG system, which when coupled with the HYACINTH pressure-retaining drilling and core storage system and the PRESS core cutting and processing system, enables deep sediments to be handled without depressurization (up to 25 MPa) and anaerobic prokaryotic enrichments and isolation to be conducted up to 100 MPa. Here, we describe the system and its first use with subsurface gas hydrate sediments from the Indian Continental Shelf, Cascadia Margin and Gulf of Mexico. Generally, highest cell concentrations in enrichments occurred close to in situ pressures (14 MPa) in a variety of media, although growth continued up to at least 80 MPa. Predominant sequences in enrichments were Carnobacterium, Clostridium, Marinilactibacillus and Pseudomonas, plus Acetobacterium and Bacteroidetes in Indian samples, largely independent of media and pressures. Related 16S rRNA gene sequences for all of these Bacteria have been detected in deep, subsurface environments, although isolated strains were piezotolerant, being able to grow at atmospheric pressure. Only the Clostridium and Acetobacterium were obligate anaerobes. No Archaea were enriched. It may be that these sediment samples were not deep enough (total depth 1126-1527 m) to obtain obligate piezophiles. PMID:19694787

  14. Radiolyis and life in deep subseafloor sediment of the South Pacific Gyre

    NASA Astrophysics Data System (ADS)

    Sauvage, J.; Spivack, A. J.; Dunlea, A. G.; Murray, R. W.; Smith, D. C.; D'Hondt, S. L.

    2012-12-01

    Integrated Ocean Drilling Program Expedition 329 revealed the occurrence of a fundamentally different subsurface world below the South Pacific Gyre (SPG) compared to previously drilled sites. The organic-poor sediment that underlies this vast ultra-oligotrophic region harbors microbial communities characterized by cell abundances three to four orders of magnitude lower than has been found at similar depths outside the gyre. The sediment column is oxic and rich in major nutrients from the seafloor to beneath the sediment-basement interface. Statistical analysis of the dissolved O2 profiles for the six sites within the SPG (U1365 through U1370) demonstrates that measurable organic-fuelled O2 reduction is limited to the upper meters of SPG sediment. At greater depths, maximum mean organic-fueled respiration rates range from 10-5 to 10-3 fmol O2 cell-1 day-1, representing a tremendously low cellular metabolism. Hydrogen is continuously produced in this sedimentary environment by radioactive splitting of water, a process known as water radiolysis. However, measured dissolved hydrogen abundances are below detection in most samples at all six sites. This combination of continuous production and low concentration suggests that radiolytic hydrogen may be a biological electron donor in the organic-poor sediment of the SPG. Gibbs energy of reaction calculations for the knallgas reaction (H2 + ½ O2 = H2O) and other hydrogen-consuming reactions show that where hydrogen concentration is above detection in SPG sediment, hydrogen oxidation is energetically favorable for microbial life (in-situ ΔGreaction averaging -210, -190, and -12 kJ/mol H2 throughout the sequence for oxygen, nitrate and sulfate reduction, respectively). By applying the water radiolysis model of Blair et al. (2007) to our preliminary data from Site U1366, we presently estimate that on average 10-5 fmol radiolytic H2 cell-1 day-1 is available throughout the site's sediment column. By measuring the radioactive

  15. Diagenesis and Associated Sedimentary Environments of Subseafloor Argillaceous Sediments in the Eastern Margin of Japan Sea

    NASA Astrophysics Data System (ADS)

    Uchida, T.; Kato, Y.; Matsumoto, R.

    2013-12-01

    The MD179 project was undertaken in 2010 by the Marion Dufresne aiming at recovering gas hydrate, methane induced carbonate and deep sediments to develop the geologic model of gas hydrate accumulation and evaluate the possible environmental impact of gas hydrate generation and decomposition for the last glacial-interglacial cycles. Sediment samples below the seafloor were retrieved as long as 40 meters at the Umitaka Spur, Joetsu Channel, Toyama Trough, Japan Basin, Nishi Tsugaru and Okushiri Ridge areas in Japan Sea. Small amounts of sandy sediment have been retrieved as thin intercalations in Pleistocene and Holocene muddy layers, where trace fossils and strong bioturbations are commonly observed. Those sandy sediments consist of very fine- to fine-grained sands, and are sometimes tuffaceous. These sandy sediments might have been transported approximately around 3 to 30 ka according to the tephra ages, where supplying sediments might have not been abundant due to sea level fluctuation during the Pleistocene ice age. It is important to clarify the relationship between burial depths and absolute porosities of the argillaceous sediments. Therefore, macroscopic observations and descriptions, measurements of porosities and the pore size distributions, thin-section observations, SEM-BEI (scanning electron microscope-backscattered electron image) observations, and the X-ray diffraction analyses have been performed. They consist of silt- to clay-grained particles, and they sometimes contain very fine- to medium-grained thin sandy layers. Average porosities are 50 % in all study areas, but mean pore sizes in the Nishi Tsugaru are around 1000 nm while 100 nm in the other areas, which tend to decrease as increasing of depths. It is suggested that repacking of the muddy particles dominantly advances by physical compaction in early diagenesis. They generally contain much opal-A, quartz, feldspar, illite and smectite that do not change definitely with depth, because they are

  16. Microbial Nitrogen Cycling Associated with the Early Diagenesis of Organic Matter in Subseafloor Sediments

    NASA Astrophysics Data System (ADS)

    Zhao, R.

    2015-12-01

    The early diagenesis of organic matter is the major energy source of marine sedimentary biosphere and thus controls its population size; however, the vertical distribution of any functional groups along with the diagenesis of organic matter is remained unclear, especially for those microbes involved in nitrogen transformation which serve as a major control on the nitrogen flux between reservoirs. Here we investigated the vertical distributions of various functional groups in five sediment cores retrieved from Arctic Mid-Ocean Ridge (AMOR), with emphasis on the nitrifiers, denitrifiers and anaerobic ammonium oxidizing bacteria (anammox). We observed the clear geochemical zonation associated with organic matter diagenesis in the sediments based on the pore water profiles of oxygen, nitrate, ammonium, manganese and sulfate, with distinct geochemical transition zones at the boundaries of geochemical zones, including oxic-anoxic transition zone (OATZ) and nitrate-manganese reduction zone (NMTZ). Nitrate was produced in surface oxygenated sediments and nitrate consumption mainly took place at the NMTZ, splitted between re-oxidation of ammonium and manganese (II). Abundances of ammonia oxidizers, nitrite oxidizers, and denitrifiers, estimated through quantitative PCR targeting their respective functional genes, generally decrease with depth, but constantly elevated around the OATZ, NMTZ, and manganese-reduction zone as well. Anammox bacteria were only detected around the NMTZ where both nitrate/nitrite and ammonium are available. These depth profiles of functional groups were also confirmed by the community structure profiling by prokaryotic 16S rRNA gene tag pyrosequencing. Cell-specific rates of nitrification and denitrification, calculated from the bulk net reaction rates divided by functional group abundances, were similar to those values from oligotrophic sediments like North Pond and thus suggested that nitrifiers and denitirifiers populations were in maintenance

  17. Sediment chemoautotrophy in the coastal ocean

    NASA Astrophysics Data System (ADS)

    Vasquez-Cardenas, Diana; Meysman, Filip J. R.; van Breugel, Peter; Boschker, Henricus T. S.

    2016-04-01

    A key process in the biogeochemistry of coastal sediments is the reoxidation of reduced intermediates formed during anaerobic mineralization which in part is performed by chemoautotrophic micro-organisms. These microbes fix inorganic carbon using the energy derived from reoxidation reactions and in doing so can fix up to 32% of the CO2 released by mineralization. However the importance and distribution of chemoautotrophy has not been systematically investigated in these environments. To address these issues we surveyed nine coastal sediments by means of bacterial biomarker analysis (phospholipid derived fatty acids) combined with stable isotope probing (13C-bicarbonate) which resulted in an almost doubling of the number of observations on coastal sedimentary chemoautotrophy. Firstly, sediment chemoautotrophy rates from this study and rates compiled from literature (0.07 to 36 mmol C m‑2 d‑1) showed a power-law relation with benthic oxygen uptake (3.4 to 192 mmol O2 m‑2 d‑1). Benthic oxygen uptake was used as a proxy for carbon mineralization to calculate the ratio of the CO2 fixed by chemoautotrophy over the total CO2 released through mineralization. This CO2 efficiency was 3% in continental shelf, 9% in nearshore and 21% in salt marsh sediments. These results suggest that chemoautotrophy plays an important role in C-cycling in reactive intertidal sediments such as salt marshes rather than in the organic-poor, permeable continental shelf sediments. Globally in the coastal ocean our empirical results show that chemoautotrophy contributes ˜0.05 Pg C y‑1 which is four times less than previous estimates. Secondly, five coastal sediment regimes were linked to the depth-distribution of chemoautotrophy: 1) permeable sediments dominated by advective porewater transport, 2) bioturbated sediments, and cohesive sediments dominated by diffusive porewater transport characterized by either 3) canonical sulfur oxidation, 4) nitrate-storing Beggiatoa, or 5) electrogenic

  18. Biogeography of Rhizobium radiobacter and distribution of associated temperate phages in deep subseafloor sediments

    PubMed Central

    Engelhardt, Tim; Sahlberg, Monika; Cypionka, Heribert; Engelen, Bert

    2013-01-01

    Bacteriophages might be the main ‘predators' in the marine deep subsurface and probably have a major impact on indigenous microbial communities. To identify their function within this habitat, we have determined their abundance and distribution along the sediment columns of two continental margin and two open ocean sites that were recovered during Leg 201 of the Ocean Drilling Program. For all investigated sites, viral abundance followed the total cell numbers with a virus-to-cell ratio between 1 and 10 in the upper 100 mbsf (meters below seafloor). An increasing ratio of about 20 in deeper layers indicated an ongoing viral production in up to 11 Ma old sediments. We have used Rhizobium radiobacter as the most frequently isolated organism from the deep subsurface with a high in situ abundance to identify the frequency of associated rhizobiophages. In this study, 16S rRNA gene copies of R. radiobacter accounted for up to 5.6% of total bacterial 16S rRNA genes (average: 0.75%) as detected by quantitative PCR. A distinctive distribution was identified for R. radiobacter as indicated by a site-specific arrangement of genetically similar populations. Whole genome information of rhizobiophage RR1-A was used to generate a primer system for quantitative PCR specifically targeting the prophage antirepressor gene, indicative for temperate phages. The quantification of this gene within various sediment horizons showed a contribution of temperate phages of up to 14.3% to the total viral abundance. Thus, the high amount of temperate phages within the sediments and among all investigated isolates indicates that lysogeny is the main viral proliferation mode in deep subsurface populations. PMID:22855213

  19. Species Richness and Adaptation of Marine Fungi from Deep-Subseafloor Sediments

    PubMed Central

    Rédou, Vanessa; Navarri, Marion; Meslet-Cladière, Laurence; Barbier, Georges

    2015-01-01

    The fungal kingdom is replete with unique adaptive capacities that allow fungi to colonize a wide variety of habitats, ranging from marine habitats to freshwater and terrestrial habitats. The diversity, importance, and ecological roles of marine fungi have recently been highlighted in deep-subsurface sediments using molecular methods. Fungi in the deep-marine subsurface may be specifically adapted to life in the deep biosphere, but this can be demonstrated only using culture-based analyses. In this study, we investigated culturable fungal communities from a record-depth sediment core sampled from the Canterbury Basin (New Zealand) with the aim to reveal endemic or ubiquist adapted isolates playing a significant ecological role(s). About 200 filamentous fungi (68%) and yeasts (32%) were isolated. Fungal isolates were affiliated with the phyla Ascomycota and Basidiomycota, including 21 genera. Screening for genes involved in secondary metabolite synthesis also revealed their bioactive compound synthesis potential. Our results provide evidence that deep-subsurface fungal communities are able to survive, adapt, grow, and interact with other microbial communities and highlight that the deep-sediment habitat is another ecological niche for fungi. PMID:25769836

  20. Energetic Constraints of Subseafloor Life

    NASA Astrophysics Data System (ADS)

    D'Hondt, S.; Spivack, A. J.; Wang, G.

    2014-12-01

    Mean per-cell rates of catabolic activity, energy flux, and biomass turnover are orders of magnitude slower in subseafloor sediment than in the surface world. Despite extreme scarcity of electron donors, competing metabolic pathways co-occur for hundreds of meters deep in subseafloor sediment deposited over millions of years. Our study of an example site (ODP Site 1226) indicates that the energy yields of these competing reactions are pinned to a thermodynamic minimum (Wang et al., 2010). The simplest explanation of this long-term co-existence is thermodynamic cooperation, where microorganisms utilize different but co-existing pathways that remove each other's reaction products. Our Site 1226 results indicate that the energy flux to subseafloor sedimentary microbes is extremely low. Comparison to biomass turnover rates at other sites suggests that most of this flux may be used for building biomolecules from existing components (e.g., amino acids in the surrounding sediment), rather than for de novo biosynthesis from inorganic chemicals. Given these discoveries, ocean drilling provides a tremendous opportunity to address several mysteries of microbial survival and natural selection under extreme energy limitation. Some of these mysteries are centered on microbial communities. To what extent do counted cells in subseafloor sediment constitute a deep microbial necrosphere? How do different kinds of microbes interact to sustain their mean activity at low average rates for millions of years? Other mysteries relate to individual cells. How slowly can a cell metabolize? How long can a cell survive at such low rates of activity? What properties allow microbes to be sustained by low fluxes of energy? In what ways do subseafloor organisms balance the benefit(s) of maximizing energy recovery with the need to minimize biochemical cost(s) of energy recovery? References Wang, G., et al., 2010. Geochimica et Cosmochimica Acta 74, 3938-3947.

  1. Sphaerochaeta multiformis sp. nov., an anaerobic, psychrophilic bacterium isolated from subseafloor sediment, and emended description of the genus Sphaerochaeta.

    PubMed

    Miyazaki, Masayuki; Sakai, Sanae; Ritalahti, Kirsti M; Saito, Yayoi; Yamanaka, Yuko; Saito, Yumi; Tame, Akihiko; Uematsu, Katsuyuki; Löffler, Frank E; Takai, Ken; Imachi, Hiroyuki

    2014-12-01

    An anaerobic, psychrophilic bacterium, strain MO-SPC2(T), was isolated from a methanogenic microbial community in a continuous-flow bioreactor that was established from subseafloor sediments collected from off the Shimokita Peninsula of Japan in the north-western Pacific Ocean. Cells were pleomorphic: spherical, annular, curved rod, helical and coccoid cell morphologies were observed. Motility only occurred in helical cells. Strain MO-SPC2(T) grew at 0-17 °C (optimally at 9 °C), at pH 6.0-8.0 (optimally at pH 6.8-7.2) and in 20-40 g NaCl l(-1) (optimally at 20-30 NaCl l(-1)). The strain grew chemo-organotrophically with mono-, di- and polysaccharides. The major end products of glucose fermentation were acetate, ethanol, hydrogen and carbon dioxide. The abundant polar lipids of strain MO-SPC2(T) were phosphatidylglycolipids, phospholipids and glycolipids. The major cellular fatty acids were C14 : 0, C16 : 0 and C16 : 1ω9. Isoprenoid quinones were not detected. The G+C content of the DNA was 32.3 mol%. 16S rRNA gene-based phylogenetic analysis showed that strain MO-SPC2(T) was affiliated with the genus Sphaerochaeta within the phylum Spirochaetes, and its closest relatives were Sphaerochaeta pleomorpha Grapes(T) (88.4 % sequence identity), Sphaerochaeta globosa Buddy(T) (86.7 %) and Sphaerochaeta coccoides SPN1(T) (85.4 %). Based on phenotypic characteristics and phylogenetic traits, strain MO-SPC2(T) is considered to represent a novel species of the genus Sphaerochaeta, for which the name Sphaerochaeta multiformis sp. nov. is proposed. The type strain is MO-SPC2(T) ( = JCM 17281(T) = DSM 23952(T)). An emended description of the genus Sphaerochaeta is also proposed. PMID:25249566

  2. Spirochaeta psychrophila sp. nov., a psychrophilic spirochaete isolated from subseafloor sediment, and emended description of the genus Spirochaeta.

    PubMed

    Miyazaki, Masayuki; Sakai, Sanae; Yamanaka, Yuko; Saito, Yumi; Takai, Ken; Imachi, Hiroyuki

    2014-08-01

    An obligately anaerobic, psychrophilic spirochaete, strain MO-SPC1(T), was isolated from a methanogenic microbial community grown in a continuous-flow bioreactor. Originally, this community was obtained from subseafloor sediments off the Shimokita Peninsula of Japan in the north-western Pacific Ocean. The cells were motile, Gram-stain-negative, helical, 0.25-0.55×3.6-15 µm, with a wavelength of approximately 0.5-0.6 µm. Strain MO-SPC1(T) grew at 0-18 °C (optimally at 15 °C), at pH 6.0-7.5 (optimally at pH 6.8-7.0) and in 20-70 g NaCl l(-1) (optimally at 30-40 NaCl l(-1)). The strain grew chemo-organotrophically with mono-, di- and polysaccharides. The major end products of glucose fermentation were acetate, ethanol, hydrogen and carbon dioxide. The abundant polar lipids of strain MO-SPC1(T) were diphosphatidylglycerol, phosphatidylglycerol, unknown phospholipids and an unknown lipid. The major cellular fatty acids (>5% of the total) were C(14 : 0), C(16 : 0), iso-C(13 : 0), iso-C(14 : 0), iso-C(15 : 0), anteiso-C(13 : 0) and anteiso-C(15 : 0). To the best of our knowledge, this is the first report of the fatty acids iso-C(13 : 0) and anteiso-C(13 : 0) from a species of the genus Spirochaeta. Isoprenoid quinones were not found. The G+C content of the genomic DNA was 39.8 mol%. 16S rRNA gene sequence-based phylogenetic analysis showed that strain MO-SPC1(T) was affiliated with the genus Spirochaeta, and its closest relatives were Spirochaeta isovalerica MA-2(T) (95.6% sequence identity) and Spirochaeta litoralis R1(T) (89.4%). Based on its phenotypic characteristics and phylogenetic traits, strain MO-SPC1(T) is placed in a separate taxon at the level of a novel species within the genus Spirochaeta, for which the name Spirochaeta psychrophila sp. nov. is proposed, reflecting its true psychrophilic physiology. The type strain is MO-SPC1(T) ( = JCM 17280(T) = DSM 23951(T)). To our knowledge, this is the first report of an

  3. Abyssisolibacter fermentans gen. nov. sp. nov., isolated from deep sub-seafloor sediment.

    PubMed

    Kim, Wonduck; Lee, Jung-Hyun; Kwon, Kae Kyoung

    2016-05-01

    A Gram-staining-negative, thin rod-shaped, anaerobic bacterium designated MCWD3(T) was isolated from sediment of the deep sea in Ulleung Basin, East Sea, Korea. The ranges of temperature, pH and NaCl for growth of this strain were 15-40°C (optimum 29°C), 5.0-10.0 (optimum pH 6.5), and 1-5%, respectively. The major fatty acids were iso-C(15:0) (30%) and iso-C(15:0) dimethyl acetal (17%). The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, and unidentified aminophospholipids, phospholipids, and aminolipids. The fermentation product from yeast extract was acetate. Phylogenetic analysis based on 16S rRNA genes indicated that the isolate was related to Sporosalibacterium faouarense (92.8% sequence identity), Clostridiisalibacter paucivorans (92.6%), and Brassicibacter mesophilus (92.4%). However, the isolate was differentiated from these genera by both physiological and chemotaxonomical properties. On the basis of a polyphasic taxonomic analysis, we propose that MCWD3(T) represents a novel taxon with the name Abyssisolibacter fermentans gen. nov. sp. nov. PMID:27095453

  4. Sediment measurement in estuarine and coastal areas

    NASA Technical Reports Server (NTRS)

    Shelley, P. E.

    1976-01-01

    A survey of uses of estuarine and coastal areas is given. Problems associated with these uses are discussed, and data needs for intelligent management of these valuable areas are outlined. Suspended sediment measurements are seen to be one of the greatest needs. To help understand the complexity of the problem, a brief discussion of sediment mechanics is given, including sediment sources, characteristics, and transport. The impact of sediment mechanics on its direct measurement (sampling and analysis) is indicated, along with recommendations for directly obtaining representative data. Indirect measurement of suspended sediment by remote sensors is discussed both theoretically and in the light of some recent experiences. The need for an integrated, multidisciplinary program to solve the problem of quantitatively measuring suspended sediment with remote sensors is stressed, and several important considerations of such a program and benefits to be derived therefrom are briefly addressed.

  5. Monitoring of trace metals in coastal sediments around Korean Peninsula.

    PubMed

    Hwang, Dong-Woon; Kim, Seong-Gil; Choi, Minkyu; Lee, In-Seok; Kim, Seong-Soo; Choi, Hee-Gu

    2016-01-15

    Spatial distributions and temporal variations of trace metals in Korean coastal sediments were investigated by determining seven metals (As, Cd, Cr, Cu, Hg, Pb, and Zn) in sediment collected from 71 stations between 2004 and 2010 (n=491). High metal concentrations were found in the southeastern coast, where there are many cities and industrial complexes, indicating that metal concentrations in Korean coastal sediment are significantly influenced by human activities associated with urbanization and industrialization. However, metal concentrations in sediment did not markedly vary temporally, which was because the coast is managed sustainably and because of the characteristics of the sediment environments. Based on the sediment quality guidelines and geoaccumulation index, Korean coastal sediments are practically unpolluted with Cd, Cr, Cu, Hg, Pb and Zn but moderately polluted with As. More intensive monitoring is required to determine the potential As sources and to understand the As geochemical cycles in Korean coastal sediments. PMID:26639653

  6. Marinilactibacillus piezotolerans sp. nov., a novel marine lactic acid bacterium isolated from deep sub-seafloor sediment of the Nankai Trough.

    PubMed

    Toffin, Laurent; Zink, Klaus; Kato, Chiaki; Pignet, Patricia; Bidault, Adeline; Bienvenu, Nadège; Birrien, Jean-Louis; Prieur, Daniel

    2005-01-01

    A piezotolerant, mesophilic, marine lactic acid bacterium (strain LT20T) was isolated from a deep sub-seafloor sediment core collected at Nankai Trough, off the coast of Japan. Cells were Gram-positive, rod-shaped, non-sporulating and non-motile. The NaCl concentration range for growth was 0-120 g l(-1), with the optimum at 10-20 g l(-1). The temperature range for growth at pH 7.0 was 4-50 degrees C, with the optimum at 37-40 degrees C. The optimum pH for growth was 7.0-8.0. The optimum pressure for growth was 0.1 MPa with tolerance up to 30 MPa. The main cellular phospholipids were phosphatidylglycerols (25 %), diphosphatidylglycerols (34 %) and a group of compounds tentatively identified as ammonium-containing phosphatidylserines (32 %); phosphatidylethanolamines (9 %) were minor components. The fatty acid composition was dominated by side chains of 16 : 0, 14 : 0 and 16 : 1. The G+C content of the genomic DNA was 42 mol%. On the basis of 16S rRNA gene sequence analysis and the secondary structure of the V6 region, this organism was found to belong to the genus Marinilactibacillus and was closely related to Marinilactibacillus psychrotolerans M13-2(T) (99 %), Marinilactibacillus sp. strain MJYP.25.24 (99 %) and Alkalibacterium olivapovliticus strain ww2-SN4C (97 %). Despite the high similarity between their 16S rRNA gene sequences (99 %), the DNA-DNA hybridization levels were less than 20 %. On the basis of physiological and genetic characteristics, it is proposed that this organism be classified as a novel species, Marinilactibacillus piezotolerans sp. nov. The type strain is LT20T (=DSM 16108T=JCM 12337T). PMID:15653899

  7. Bacterial diversity and community composition from seasurface to subseafloor.

    PubMed

    Walsh, Emily A; Kirkpatrick, John B; Rutherford, Scott D; Smith, David C; Sogin, Mitchell; D'Hondt, Steven

    2016-04-01

    We investigated compositional relationships between bacterial communities in the water column and those in deep-sea sediment at three environmentally distinct Pacific sites (two in the Equatorial Pacific and one in the North Pacific Gyre). Through pyrosequencing of the v4-v6 hypervariable regions of the 16S ribosomal RNA gene, we characterized 450,104 pyrotags representing 29,814 operational taxonomic units (OTUs, 97% similarity). Hierarchical clustering and non-metric multidimensional scaling partition the samples into four broad groups, regardless of geographic location: a photic-zone community, a subphotic community, a shallow sedimentary community and a subseafloor sedimentary community (⩾1.5 meters below seafloor). Abundance-weighted community compositions of water-column samples exhibit a similar trend with depth at all sites, with successive epipelagic, mesopelagic, bathypelagic and abyssopelagic communities. Taxonomic richness is generally highest in the water-column O2 minimum zone and lowest in the subseafloor sediment. OTUs represented by abundant tags in the subseafloor sediment are often present but represented by few tags in the water column, and represented by moderately abundant tags in the shallow sediment. In contrast, OTUs represented by abundant tags in the water are generally absent from the subseafloor sediment. These results are consistent with (i) dispersal of marine sedimentary bacteria via the ocean, and (ii) selection of the subseafloor sedimentary community from within the community present in shallow sediment. PMID:26430855

  8. Bacterial diversity and community composition from seasurface to subseafloor

    PubMed Central

    Walsh, Emily A; Kirkpatrick, John B; Rutherford, Scott D; Smith, David C; Sogin, Mitchell; D'Hondt, Steven

    2016-01-01

    We investigated compositional relationships between bacterial communities in the water column and those in deep-sea sediment at three environmentally distinct Pacific sites (two in the Equatorial Pacific and one in the North Pacific Gyre). Through pyrosequencing of the v4–v6 hypervariable regions of the 16S ribosomal RNA gene, we characterized 450 104 pyrotags representing 29 814 operational taxonomic units (OTUs, 97% similarity). Hierarchical clustering and non-metric multidimensional scaling partition the samples into four broad groups, regardless of geographic location: a photic-zone community, a subphotic community, a shallow sedimentary community and a subseafloor sedimentary community (⩾1.5 meters below seafloor). Abundance-weighted community compositions of water-column samples exhibit a similar trend with depth at all sites, with successive epipelagic, mesopelagic, bathypelagic and abyssopelagic communities. Taxonomic richness is generally highest in the water-column O2 minimum zone and lowest in the subseafloor sediment. OTUs represented by abundant tags in the subseafloor sediment are often present but represented by few tags in the water column, and represented by moderately abundant tags in the shallow sediment. In contrast, OTUs represented by abundant tags in the water are generally absent from the subseafloor sediment. These results are consistent with (i) dispersal of marine sedimentary bacteria via the ocean, and (ii) selection of the subseafloor sedimentary community from within the community present in shallow sediment. PMID:26430855

  9. Coastal sediment elevation change following anthropogenic mangrove clearing

    NASA Astrophysics Data System (ADS)

    Hayden, Heather L.; Granek, Elise F.

    2015-11-01

    Coastal mangrove forests along tropical shorelines serve as an important interface between land and sea. They provide a physical buffer protecting the coastline from erosion and act as sediment "traps" catching terrestrial sediment, thus preventing smothering of subtidal coral reefs. Coastal development that removes mangrove habitat may impact adjacent nearshore coral reefs through sedimentation and nutrient loading. We examined differences in sediment elevation change between patches of open-coast intact and anthropogenically cleared red mangroves (Rhizophora mangle) on the east side of Turneffe Atoll, Belize, to quantify changes following mangrove clearing. Samples were collected over a 24 month period at five study sites, each containing paired intact (+mangrove) and cleared (-mangrove) plots. Five sediment elevation pins were deployed in each plot: behind areas cleared of mangroves (-mangrove) and behind adjacent intact mangroves (+mangrove). Sediment elevation increased at intact mangrove sites (M = +3.83 mm, SE = 0.95) whereas cleared mangrove areas suffered elevation loss (M = -7.30 mm, SE = 3.38). Mangroves inshore of partial or continuous gaps in the adjacent fringing reefs had higher rates of elevation loss (M = -15.05 mm) than mangroves inshore of continuous fringing reefs (M = -1.90 mm). Our findings provide information on potential effects of mangrove clearing and the role of offshore habitat characteristics on coastal sediment trapping and maintenance of sediment elevation by mangroves. With implications for coastline capacity to adjust to sea level rise, these findings are relevant to management of coastal fringing mangrove forests across the Caribbean.

  10. Dispersal of fine sediment in nearshore coastal waters

    USGS Publications Warehouse

    Warrick, Jonathan A.

    2013-01-01

    Fine sediment (silt and clay) plays an important role in the physical, ecological, and environmental conditions of coastal systems, yet little is known about the dispersal and fate of fine sediment across coastal margin settings outside of river mouths. Here I provide simple physical scaling and detailed monitoring of a beach nourishment project near Imperial Beach, California, with a high portion of fines (40% silt and clay by weight). These results provide insights into the pathways and residence times of fine sediment transport across a wave-dominated coastal margin. Monitoring of the project used physical, optical, acoustic, and remote sensing techniques to track the fine portion of the nourishment sediment. The initial transport of fine sediment from the beach was influenced strongly by longshore currents of the surf zone that were established in response to the approach angles of the waves. The mean residence time of fine sediment in the surf zone—once it was suspended—was approximately 1 hour, and rapid decreases in surf zone fine sediment concentrations along the beach resulted from mixing and offshore transport in turbid rip heads. For example, during a day with oblique wave directions and surf zone longshore currents of approximately 25 cm/s, the offshore losses of fine sediment in rips resulted in a 95% reduction in alongshore surf zone fine sediment flux within 1 km of the nourishment site. However, because of the direct placement of nourishment sediment on the beach, fine suspended-sediment concentrations in the swash zone remained elevated for several days after nourishment, while fine sediment was winnowed from the beach. Once offshore of the surf zone, fine sediment settled downward in the water column and was observed to transport along and across the inner shelf. Vertically sheared currents influenced the directions and rates of fine sediment transport on the shelf. Sedimentation of fine sediment was greatest on the seafloor directly offshore

  11. Florida submergence curve revised: Its relation to coastal sedimentation rates

    USGS Publications Warehouse

    Scholl, D. W.; Craighead, F.C., Sr.; Stuiver, M.

    1969-01-01

    New data substantiate as well as modify the south Florida submergence curve, which indicates that eustatic sea level has risen continuously, although at a generally decreasing rate, during the last 6500 to 7000 sidereal years (5500 standard radiocarbon years) to reach its present position. Accumulation rates of coastal deposits are similar to the rate of sea-level rise, thus supporting the generalization that submergence rates largely determine as well as limit rates of coastal sedimentation in lagoonal and estuarine areas.

  12. South Florida Coastal Sediment Ecological Risk Assessment.

    PubMed

    Julian, Paul

    2015-08-01

    This study evaluated the degree of sediment contamination in several South Florida estuaries. During the 2010 National Condition Assessment, Florida Fish and Wildlife Research Institute collected water column, sediment and biotic data from estuaries across the entire state of Florida. Sediments were analyzed for arsenic, cadmium, chromium, lead, mercury, zinc and total polychlorinated biphenyls and were compared relative to empirically derived sediment quality guidelines. As a result of this data collection and assessment effort, it was determined that the degree of contamination with respect to sediment was low for all southern Florida estuaries assessed, except the Miami River which was determined to be considerably contaminated. However only one monitoring location was used to assess the Miami River, and as such should be viewed with caution. A low degree of contamination was determined for Biscayne Bay sediments, possibly indicating a recovery from its previously reported higher contaminant level. PMID:26084967

  13. Recent Advances in Studies of Coastal Marsh Sedimentation

    NASA Astrophysics Data System (ADS)

    Pasternack, G. B.; Leonard, L. A.

    2001-05-01

    Limited understanding of sedimentation processes in coastal marshes is a key constraint on the management of environmental impacts associated with sea level rise, degrading quality and quantity of aquatic habitats, and downstream impacts of watershed land use. The problem is exacerbated by complex interactions among physical, ecological, and chemical variables that impact sedimentation over a large range of spatio-temporal scales. These challenges are being met by increasingly sophisticated approaches which cross-fertilize from other disciplines or go even further to integrate multidisciplinary perspectives. One example of the former has been improved precision of fine scale measurements of fluid mechanics and sediment transport over marsh plains and application of those measurements in geomorphologic and coastal engineering models. This advancement has improved our understanding of marsh dynamics at a mechanistic level, which is key for improving the predictive capabilities of wetland models. An example of a multidisciplinary approach that has become very common is the combined usage of multiple monitoring, isotopic, and palynological methods for estimating sedimentation and erosion at a site over a range of time scales. By applying such combinations, it has been possible to piece apart the relative roles of natural processes such as sea level rise and storms from human impacts such as flow constrictions, channel dredging, and sediment supply changes. Beyond improving approaches used to study marshes, past work has led to new questions about marsh morphodynamics and how coastal marshes interact with upland watersheds. With the aid of chaos theory, some recent studies have asserted that coastal marsh channels are fractal and thus must follow universal laws in common with watershed drainages and other dendritic systems. Also, where marshes exist among a mosaic of habitats on a delta, research has revealed the relative roles of watershed versus coastal processes in

  14. Estimating the fluvial sediment input to the coastal sediment budget: A case study of Ghana

    NASA Astrophysics Data System (ADS)

    Boateng, Isaac; Bray, Malcolm; Hooke, Janet

    2012-02-01

    Knowledge of fluvial sediment supply to the coastal sediment budget is important for the assessment of the impacts on coastal stability. Such knowledge is valuable for designing coastal engineering schemes and the development of shoreline management planning policies. It also facilitates understanding of the connection between rivers in the hinterland and adjoining coastal systems. Ghana's coast has many fluvial sediment sources and this paper provides the first quantitative assessments of their contributions to the coastal sediment budget. The methods use largely existing data and attempt to cover all of Ghana's significant coastal rivers. Initially work was hindered by insufficient direct measured data. However, the problem was overcome by the application of a regression approach, which provides an estimated sediment yield for non-gauged rivers based on data from gauged rivers with similar characteristics. The regression approach was effective because a regional coherence in behaviour was determined between those rivers, where direct measured data were available. The results of the assessment revealed that Ghana's coast is dissected by many south-draining rivers, stream and lagoons. These rivers, streams and lagoons supply significant amounts of sediment to coastal lowlands and therefore contribute importantly to beaches. Anthropogenic impoundment of fluvial sediment, especially the Akosombo dam on the Volta River, has reduced the total fluvial sediment input to the coast from about 71 × 10 6 m 3/a before 1964 (pre-Akosombo dam) to about 7 × 10 6 m 3/a at present (post-Akosombo dam). This sharp reduction threatened the stability of the east coast and prompted an expensive ($83 million) defence scheme to be implemented to protect 8.4 km-long coastline at Keta. Sections of Ghana's coast are closely connected to the hinterland through the fluvial sediment input from local rivers. Therefore, development in the hinterland that alters the fluvial sediment input from

  15. Controls of Sediment Nitrogen Dynamics in Tropical Coastal Lagoons

    PubMed Central

    Enrich-Prast, Alex; Figueiredo, Viviane; Esteves, Francisco de Assis; Nielsen, Lars Peter

    2016-01-01

    Sediment denitrification rates seem to be lower in tropical environments than in temperate environments. Using the isotope pairing technique, we measured actual denitrification rates in the sediment of tropical coastal lagoons. To explain the low denitrification rates observed at all study sites (<5 μmol N2 m-2 h-1), we also evaluated potential oxygen (O2) consumption, potential nitrification, potential denitrification, potential anammox, and estimated dissimilatory nitrate (NO3-) reduction to ammonium (NH4+; DNRA) in the sediment. 15NO3- and 15NH4+ conversion was measured in oxic and anoxic slurries from the sediment surface. Sediment potential O2 consumption was used as a proxy for overall mineralization activity. Actual denitrification rates and different potential nitrogen (N) oxidation and reduction processes were significantly correlated with potential O2 consumption. The contribution of potential nitrification to total O2 consumption decreased from contributing 9% at sites with the lowest sediment mineralization rates to less than 0.1% at sites with the highest rates. NO3- reduction switched completely from potential denitrification to estimated DNRA. Ammonium oxidation and nitrite (NO2-) reduction by potential anammox contributed up to 3% in sediments with the lowest sediment mineralization rates. The majority of these patterns could be explained by variations in the microbial environments from stable and largely oxic conditions at low sediment mineralization sites to more variable conditions and the prevalences of anaerobic microorganisms at high sediment mineralization sites. Furthermore, the presence of algal and microbial mats on the sediment had a significant effect on all studied processes. We propose a theoretical model based on low and high sediment mineralization rates to explain the growth, activity, and distribution of microorganisms carrying out denitrification and DNRA in sediments that can explain the dominance or coexistence of DNRA and

  16. Controls of Sediment Nitrogen Dynamics in Tropical Coastal Lagoons.

    PubMed

    Enrich-Prast, Alex; Figueiredo, Viviane; Esteves, Francisco de Assis; Nielsen, Lars Peter

    2016-01-01

    Sediment denitrification rates seem to be lower in tropical environments than in temperate environments. Using the isotope pairing technique, we measured actual denitrification rates in the sediment of tropical coastal lagoons. To explain the low denitrification rates observed at all study sites (<5 μmol N2 m-2 h-1), we also evaluated potential oxygen (O2) consumption, potential nitrification, potential denitrification, potential anammox, and estimated dissimilatory nitrate (NO3-) reduction to ammonium (NH4+; DNRA) in the sediment. 15NO3- and 15NH4+ conversion was measured in oxic and anoxic slurries from the sediment surface. Sediment potential O2 consumption was used as a proxy for overall mineralization activity. Actual denitrification rates and different potential nitrogen (N) oxidation and reduction processes were significantly correlated with potential O2 consumption. The contribution of potential nitrification to total O2 consumption decreased from contributing 9% at sites with the lowest sediment mineralization rates to less than 0.1% at sites with the highest rates. NO3- reduction switched completely from potential denitrification to estimated DNRA. Ammonium oxidation and nitrite (NO2-) reduction by potential anammox contributed up to 3% in sediments with the lowest sediment mineralization rates. The majority of these patterns could be explained by variations in the microbial environments from stable and largely oxic conditions at low sediment mineralization sites to more variable conditions and the prevalences of anaerobic microorganisms at high sediment mineralization sites. Furthermore, the presence of algal and microbial mats on the sediment had a significant effect on all studied processes. We propose a theoretical model based on low and high sediment mineralization rates to explain the growth, activity, and distribution of microorganisms carrying out denitrification and DNRA in sediments that can explain the dominance or coexistence of DNRA and

  17. Understanding coastal morphodynamic patterns from depth-averaged sediment concentration

    NASA Astrophysics Data System (ADS)

    Ribas, F.; Falqués, A.; de Swart, H. E.; Dodd, N.; Garnier, R.; Calvete, D.

    2015-06-01

    This review highlights the important role of the depth-averaged sediment concentration (DASC) to understand the formation of a number of coastal morphodynamic features that have an alongshore rhythmic pattern: beach cusps, surf zone transverse and crescentic bars, and shoreface-connected sand ridges. We present a formulation and methodology, based on the knowledge of the DASC (which equals the sediment load divided by the water depth), that has been successfully used to understand the characteristics of these features. These sand bodies, relevant for coastal engineering and other disciplines, are located in different parts of the coastal zone and are characterized by different spatial and temporal scales, but the same technique can be used to understand them. Since the sand bodies occur in the presence of depth-averaged currents, the sediment transport approximately equals a sediment load times the current. Moreover, it is assumed that waves essentially mobilize the sediment, and the current increases this mobilization and advects the sediment. In such conditions, knowing the spatial distribution of the DASC and the depth-averaged currents induced by the forcing (waves, wind, and pressure gradients) over the patterns allows inferring the convergence/divergence of sediment transport. Deposition (erosion) occurs where the current flows from areas of high to low (low to high) values of DASC. The formulation and methodology are especially useful to understand the positive feedback mechanisms between flow and morphology leading to the formation of those morphological features, but the physical mechanisms for their migration, their finite-amplitude behavior and their decay can also be explored.

  18. Ecosystem engineering and biodiversity in coastal sediments: posing hypotheses

    NASA Astrophysics Data System (ADS)

    Bouma, Tjeerd J.; Olenin, Sergej; Reise, Karsten; Ysebaert, Tom

    2009-03-01

    Coastal sediments in sheltered temperate locations are strongly modified by ecosystem engineering species such as marsh plants, seagrass, and algae as well as by epibenthic and endobenthic invertebrates. These ecosystem engineers are shaping the coastal sea and landscape, control particulate and dissolved material fluxes between the land and sea, and between the benthos and the passing water or air. Above all, habitat engineering exerts facilitating and inhibiting effects on biodiversity. Despite a strongly growing interest in the functional role of ecosystem engineering over the recent years, compared to food web analyses, the conceptual understanding of engineering-mediated species interactions is still in its infancy. In the present paper, we provide a concise overview on current insights and propose two hypotheses on the general mechanisms by which ecosystem engineering may affect biodiversity in coastal sediments. We hypothesise that autogenic and allogenic ecosystem engineers have inverse effects on epibenthic and endobenthic biodiversity in coastal sediments. The primarily autogenic structures of the epibenthos achieve high diversity at the expense of endobenthos, whilst allogenic sediment reworking by infauna may facilitate other infauna and inhibits epibenthos. On a larger scale, these antagonistic processes generate patchiness and habitat diversity. Due to such interaction, anthropogenic influences can strongly modify the engineering community by removing autogenic ecosystem engineers through coastal engineering or bottom trawling. Another source of anthropogenic influences comes from introducing invasive engineers, from which the impact is often hard to predict. We hypothesise that the local biodiversity effects of invasive ecosystem engineers will depend on the engineering strength of the invasive species, with engineering strength defined as the number of habitats it can invade and the extent of modification. At a larger scale of an entire shore

  19. Assessing the sedimentation deficit problem in Louisiana's coastal salt marshes

    SciTech Connect

    Reed, D.J.

    1990-09-01

    The imbalance between relative sea-level rise and vertical marsh accretion is frequently cited as a major factor in the problem of wetland loss in coastal Louisiana. Relative sea-level rise rates are high, compared to the rest of the Gulf coast, owing to subsidence of Holocene Mississippi deltaic plain sediments, and although marsh accretion rates are also high, in comparison with other coastal areas of the US, they are usually insufficient to maintain the relative elevation of the marsh surface. This situation is commonly referred to as a sedimentation deficit. One of the problems with evaluating the magnitude of the sedimentation deficit problem in Louisiana, and its spatial variation, is that measurements of subsidence and marsh accretion or sedimentation are rarely made on similar time scales. Subsidence affecting the marsh surface is composed of a number of factors, including compaction of recently deposited sediments, regional downwarping, and diagenesis of underlying Pleistocene and earlier sediments. The total effect of these factors, in combination with eustatic sea-level rise, is frequently obtained from tide gauge measurements over the last 50 years or so. Subsidence is also measured by dating sedimentary horizons of known depth that characterize surface environments. Carbon-14 is a common tool for this type of study and subsidence is then averaged over periods of up to several thousand years. In comparison, marsh accretion or sediment deposition can be measured over periods from several hundred years, using Lead-210 dating, to several days, using marsh surface sediment traps. The many techniques available for measuring the sedimentary status of the marsh surface can provide a variety of information concerning the processes responsible for sediment deposition and vertical accretion.

  20. Carbon mineralization pathways and bioturbation in coastal Brazilian sediments.

    PubMed

    Quintana, Cintia O; Shimabukuro, Maurício; Pereira, Camila O; Alves, Betina G R; Moraes, Paula C; Valdemarsen, Thomas; Kristensen, Erik; Sumida, Paulo Y G

    2015-01-01

    Carbon mineralization processes and their dependence on environmental conditions (e.g. through macrobenthic bioturbation) have been widely studied in temperate coastal sediments, but almost nothing is known about these processes in subtropical coastal sediments. This study investigated pathways of organic carbon mineralization and associated effects of macrobenthic bioturbation in winter and summer (September 2012 and February 2014) at the SE Brazilian coast. Iron reduction (FeR) was responsible for 73-81% of total microbial carbon mineralization in September 2012 and 32-61% in February 2014. Similar high rates of FeR have only been documented a few times in coastal sediments and can be sustained by the presence of large bioturbators. Denitrification accounted for 5-27% of total microbial carbon mineralization while no SO4(2-) reduction was detected in any season. Redox profiles suggested that conditions were less reduced in February 2014 than in September 2012, probably associated with low reactivity of the organic matter, higher rates of aerobic respiration and bioirrigation by the higher density of small-macrofauna. Bioturbation by small macrofauna may maintain the sediment oxidized in summer, while large-sized species stimulate the reoxidation of reduced compounds throughout the year. Therefore, bioturbation seems to have an important role modulating the pathways of carbon mineralization in the area. PMID:26525137

  1. Carbon mineralization pathways and bioturbation in coastal Brazilian sediments

    PubMed Central

    Quintana, Cintia O.; Shimabukuro, Maurício; Pereira, Camila O.; Alves, Betina G. R.; Moraes, Paula C.; Valdemarsen, Thomas; Kristensen, Erik; Sumida, Paulo Y. G.

    2015-01-01

    Carbon mineralization processes and their dependence on environmental conditions (e.g. through macrobenthic bioturbation) have been widely studied in temperate coastal sediments, but almost nothing is known about these processes in subtropical coastal sediments. This study investigated pathways of organic carbon mineralization and associated effects of macrobenthic bioturbation in winter and summer (September 2012 and February 2014) at the SE Brazilian coast. Iron reduction (FeR) was responsible for 73–81% of total microbial carbon mineralization in September 2012 and 32–61% in February 2014. Similar high rates of FeR have only been documented a few times in coastal sediments and can be sustained by the presence of large bioturbators. Denitrification accounted for 5–27% of total microbial carbon mineralization while no SO42− reduction was detected in any season. Redox profiles suggested that conditions were less reduced in February 2014 than in September 2012, probably associated with low reactivity of the organic matter, higher rates of aerobic respiration and bioirrigation by the higher density of small-macrofauna. Bioturbation by small macrofauna may maintain the sediment oxidized in summer, while large-sized species stimulate the reoxidation of reduced compounds throughout the year. Therefore, bioturbation seems to have an important role modulating the pathways of carbon mineralization in the area. PMID:26525137

  2. Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments.

    PubMed

    Dyksma, Stefan; Bischof, Kerstin; Fuchs, Bernhard M; Hoffmann, Katy; Meier, Dimitri; Meyerdierks, Anke; Pjevac, Petra; Probandt, David; Richter, Michael; Stepanauskas, Ramunas; Mußmann, Marc

    2016-08-01

    Marine sediments are the largest carbon sink on earth. Nearly half of dark carbon fixation in the oceans occurs in coastal sediments, but the microorganisms responsible are largely unknown. By integrating the 16S rRNA approach, single-cell genomics, metagenomics and transcriptomics with (14)C-carbon assimilation experiments, we show that uncultured Gammaproteobacteria account for 70-86% of dark carbon fixation in coastal sediments. First, we surveyed the bacterial 16S rRNA gene diversity of 13 tidal and sublittoral sediments across Europe and Australia to identify ubiquitous core groups of Gammaproteobacteria mainly affiliating with sulfur-oxidizing bacteria. These also accounted for a substantial fraction of the microbial community in anoxic, 490-cm-deep subsurface sediments. We then quantified dark carbon fixation by scintillography of specific microbial populations extracted and flow-sorted from sediments that were short-term incubated with (14)C-bicarbonate. We identified three distinct gammaproteobacterial clades covering diversity ranges on family to order level (the Acidiferrobacter, JTB255 and SSr clades) that made up >50% of dark carbon fixation in a tidal sediment. Consistent with these activity measurements, environmental transcripts of sulfur oxidation and carbon fixation genes mainly affiliated with those of sulfur-oxidizing Gammaproteobacteria. The co-localization of key genes of sulfur and hydrogen oxidation pathways and their expression in genomes of uncultured Gammaproteobacteria illustrates an unknown metabolic plasticity for sulfur oxidizers in marine sediments. Given their global distribution and high abundance, we propose that a stable assemblage of metabolically flexible Gammaproteobacteria drives important parts of marine carbon and sulfur cycles. PMID:26872043

  3. Coastal Sediment Monitoring by Spectral Analysis

    NASA Astrophysics Data System (ADS)

    Muttitanon, W.

    2014-11-01

    Water monitoring is important to environment control and ecosystem studies which not only scientifically relevant but also legally binding in several countries. Suspended sediment concentration is one of the main parameters for the water monitoring and can be roughly detected from satellite. In the present study, the Chao Phraya River mouth was used as a case study to assess the suspended measuring using water quality index with Landsat TM imagery. A turbidity map was obtain by applying band math and convert to turbidity backscattering. This solution can be used for water quality index and applying with all satellite data.

  4. Pigment preservation and remineralization in oxic coastal marine sediments

    NASA Astrophysics Data System (ADS)

    Furlong, Edward T.; Carpenter, Roy

    1988-01-01

    Complex mixtures of sedimentary chlorophyll degradation products were measured using high performance liquid chromatography (HPLC) in 210Pb dated box- and piston-core sediments. Sediments were collected from Dabob Bay, Washington, a coastal marine fjord conducive to studies yielding an understanding of the remineralization and diagenesis of organic carbon. Greater than 99% of the pheopigment flux out of the water column does not accumulate in the top 2 cm of sediment. Surface sediment pigment profiles indicate that pheophorbides are the dominant pheopigments observed, with concentrations decreasing rapidly with depth. Concentrations of chlorophyll c derivatives also decrease rapidly, but ratios of a/c pheopigments remain within ranges reported for natural and cultured phytoplankton. Sharp pheopigment concentration decreases within the bioturbated surface sediments (as defined by 210Pb activities) were modeled using a one dimensional mixing model. The in situ pheopigment decomposition rate, corrected for bioturbation and sediment accumulation, corresponds to an approximate half-life of 40 days. Sedimentary humic acid, fulvic acid, and residual humin associated pheopigments in sediments which had been previously acetone extracted to remove the lipophilic pheopigment fraction were typed by chromic acid oxidation and release of pyrrole derived maleimides. This humic associated pyrrole derived nitrogen, while a small fraction of total sedimentary or humic nitrogen, accounted for 16-75% of the total sedimentary pheopigment accumulation, and may be significant in understanding the diagenetic fate and transformation of pheopigments to petroporphyrins.

  5. Oxygen consumption in subseafloor basaltic crust

    NASA Astrophysics Data System (ADS)

    Orcutt, B. N.; Wheat, C. G.; Hulme, S.; Edwards, K. J.; Bach, W.

    2012-12-01

    Oceanic crust is the largest potential habitat for life on Earth and may contain a significant fraction of Earth's total microbial biomass, yet little is known about the form and function of life in this vast subseafloor realm that covers nearly two-thirds of the Earth's surface. A deep biosphere hosted in subseafloor basalts has been suggested from several lines of evidence; yet, empirical analysis of metabolic reaction rates in basaltic crust is lacking. Here we report the first measure of oxygen consumption in young (~ 8 Ma) and cool (<25 degrees C) basaltic crust, calculated from modeling oxygen and strontium profiles in basal sediments collected during Integrated Ocean Drilling Program (IODP) Expedition 336 to 'North Pond', a sediment 'pond' on the western flank of the Mid-Atlantic Ridge (MAR), where vigorous fluid circulation within basaltic crust occurs. Dissolved oxygen concentrations increased towards the sediment-basement interface, indicating an upward diffusional supply from oxic fluids circulating within the crust. A parametric reaction-transport model suggests oxygen consumption rates on the order of 0.5-500 nmol per cubic centimeter fluid per day in young and cool basaltic crust, providing sufficient energy to support a subsurface crustal biosphere.

  6. Coastal erosion vs riverline sediment discharge in the Arctic shelfx seas

    USGS Publications Warehouse

    Rachold, V.; Grigoriev, M.N.; Are, F.E.; Solomon, Sean C.; Reimnitz, E.; Kassens, H.; Antonow, M.

    2000-01-01

    This article presents a comparison of sediment input by rivers and by coastal erosion into both the Laptev Sea and the Canadian Beaufort Sea (CBS). New data on coastal erosion in the Laptev Sea, which are based on field measurements and remote sensing information and existing data on coastal erosion in the CBS as well as riverine sediment discharge into both the Laptev Sea and the CBS are included. Strong regional differences in the percentages of coastal ero- sion and riverine sediment supply are observed. The CBS is dominated by the riverine sediment discharge (64.45x106 t a-1) mainly of the Mackenzie River. which is the largest single source of sediments in the Arctic. Riverine sediment discharge into the Laptev Sea amounts to 24.10x106 t a-1, more than 70% of which are related to the Lena River. In comparison with the CBS. the Laptev Sea coast on average delivers approximately twice as much sediment mass per kilometer, a result of higher erosion rates due to higher cliffs and seasonal ice melting. In the Laptev Sea sediment input by coastal erosion (58.4x106 t a-1) is therefore more important than in the CBS and the ratio between riverine and coastal sediment input amounts to 0.4. Coastal erosion supplying 5.6x106 t a-1 is less significant for the sediment budget of the CBS where riverine sediment discharge exceeds coastal sediment input by a factor of ca. 10.

  7. Pigment preservation and remineralization in oxic coastal marine sediments

    SciTech Connect

    Furlong, E.T.; Carpenter, R.

    1988-01-01

    Complex mixtures of sedimentary chlorophyll degradation products were measured using high performance liquid chromatography (HPLC) in /sup 210/Pb dated box- and piston-core sediments. Sediments were collected from Dabob Bay, Washington, a coastal marine fjord conducive to studies yielding an understanding of the remineralization and diagenesis of organic carbon. Greater than 99% of the pheopigment flux out of the water column does not accumulate in the top 2 cm of sediment. Surface sediment pigment profiles indicate that pheophoribides are the dominant pheopigments observed, with concentrations decreasing rapidly with depth. Concentrations of chlorophyll c derivatives also decrease rapidly, but ratios of a/c pheopigments remain within ranges reported for natural and cultured phytoplankton. Sharp pheopigment concentrations decreases within the bioturbated surface sediments were modeled using a one dimensional mixing model. Sedimentary humic acid, fulvic acid, and residual humin associated pheopigments in sediments which had been previously acetone extracted to remove the lipophilic pheopigment fraction were typed by chromic acid oxidation and release of pyrrole derived maleimides. This humic associated pyrrole derived nitrogen, while a small fraction of total sedimentary or humic nitrogen, accounted for 16-75% of the total sedimentary pheopigment accumulation, and may be significant in understanding the diagenetic fate and transformation of pheopigments to petroporphyrins.

  8. Rapid Sediment Accumulation Results in High Methane Effluxes from Coastal Sediments.

    PubMed

    Egger, Matthias; Lenstra, Wytze; Jong, Dirk; Meysman, Filip J R; Sapart, Célia J; van der Veen, Carina; Röckmann, Thomas; Gonzalez, Santiago; Slomp, Caroline P

    2016-01-01

    Globally, the methane (CH4) efflux from the ocean to the atmosphere is small, despite high rates of CH4 production in continental shelf and slope environments. This low efflux results from the biological removal of CH4 through anaerobic oxidation with sulfate in marine sediments. In some settings, however, pore water CH4 is found throughout the sulfate-bearing zone, indicating an apparently inefficient oxidation barrier for CH4. Here we demonstrate that rapid sediment accumulation can explain this limited capacity for CH4 removal in coastal sediments. In a saline coastal reservoir (Lake Grevelingen, The Netherlands), we observed high diffusive CH4 effluxes from the sediment into the overlying water column (0.2-0.8 mol m-2 yr-1) during multiple years. Linear pore water CH4 profiles and the absence of an isotopic enrichment commonly associated with CH4 oxidation in a zone with high rates of sulfate reduction (50-170 nmol cm-3 d-1) both suggest that CH4 is bypassing the zone of sulfate reduction. We propose that the rapid sediment accumulation at this site (~ 13 cm yr-1) reduces the residence time of the CH4 oxidizing microorganisms in the sulfate/methane transition zone (< 5 years), thus making it difficult for these slow growing methanotrophic communities to build-up sufficient biomass to efficiently remove pore water CH4. In addition, our results indicate that the high input of organic matter (~ 91 mol C m-2 yr-1) allows for the co-occurrence of different dissimilatory respiration processes, such as (acetotrophic) methanogenesis and sulfate reduction in the surface sediments by providing abundant substrate. We conclude that anthropogenic eutrophication and rapid sediment accumulation likely increase the release of CH4 from coastal sediments. PMID:27560511

  9. Rapid Sediment Accumulation Results in High Methane Effluxes from Coastal Sediments

    PubMed Central

    Lenstra, Wytze; Jong, Dirk; Meysman, Filip J. R.; Sapart, Célia J.; van der Veen, Carina; Röckmann, Thomas; Gonzalez, Santiago; Slomp, Caroline P.

    2016-01-01

    Globally, the methane (CH4) efflux from the ocean to the atmosphere is small, despite high rates of CH4 production in continental shelf and slope environments. This low efflux results from the biological removal of CH4 through anaerobic oxidation with sulfate in marine sediments. In some settings, however, pore water CH4 is found throughout the sulfate-bearing zone, indicating an apparently inefficient oxidation barrier for CH4. Here we demonstrate that rapid sediment accumulation can explain this limited capacity for CH4 removal in coastal sediments. In a saline coastal reservoir (Lake Grevelingen, The Netherlands), we observed high diffusive CH4 effluxes from the sediment into the overlying water column (0.2–0.8 mol m-2 yr-1) during multiple years. Linear pore water CH4 profiles and the absence of an isotopic enrichment commonly associated with CH4 oxidation in a zone with high rates of sulfate reduction (50–170 nmol cm-3 d-1) both suggest that CH4 is bypassing the zone of sulfate reduction. We propose that the rapid sediment accumulation at this site (~ 13 cm yr-1) reduces the residence time of the CH4 oxidizing microorganisms in the sulfate/methane transition zone (< 5 years), thus making it difficult for these slow growing methanotrophic communities to build-up sufficient biomass to efficiently remove pore water CH4. In addition, our results indicate that the high input of organic matter (~ 91 mol C m-2 yr-1) allows for the co-occurrence of different dissimilatory respiration processes, such as (acetotrophic) methanogenesis and sulfate reduction in the surface sediments by providing abundant substrate. We conclude that anthropogenic eutrophication and rapid sediment accumulation likely increase the release of CH4 from coastal sediments. PMID:27560511

  10. Examining Sediment-bound Radiocesium Dynamics in Two Fukushima Coastal Catchments with Sediment Fingerprinting Techniques

    NASA Astrophysics Data System (ADS)

    Laceby, J. P.; Lepage, H.; Bonté, P.; Joron, J. L.; Onda, Y.; Lefèvre, I.; Ayrault, S.; Evrard, O.

    2015-12-01

    The Fukushima Dai-ichi nuclear power plant accident resulted in the significant fallout of radiocesium (137Cs and 134Cs) over the Fukushima region. After deposition on the soil surface, radiocesium is primarily bound to fine soil particles. Subsequently, rainfall and snow melt run-off events result in the downstream migration of radiocesium. Understanding the spatial distribution and relative contribution of different sediment sources is therefore fundamental to the management of radiocesium migration. Sediment fingerprinting techniques were used to determine the location and relative contributions of different sediment sources in the Mano and Niida Rivers, in the Fukushima region. First, we modelled the relative contributions of radiocesium from the upstream portions of the catchment, that received greater proportions of the fallout (e.g. >20 kBq kg-1), to sediment sampled in the downstream coastal regions. Second, we examined the elemental geochemistry of the major soil types (e.g. Andosols, Cambisols, Fluvisols) within these catchments and modelled their relative contribution to sediment sampled throughout these catchments. Elemental composition was measured with neutron activation analysis, radiocesium with gamma-spectrometry and a distribution modelling approach quantified source contributions. In the Mano River ~20% of the radiocesium sampled was modelled to be derived from the upstream area compared to ~50% in the Niida River. The highest contribution of upstream radiocesium was modelled after the typhoon seasons in 2011 and 2013. Fluvisols were found to be the dominant source of sediment (76%). The dominance of Fluvisols indicates that sediments are likely derived from sources that are highly connected to the river network (e.g. rice paddy fields). Understanding the relative contributions of these different sediment sources will allow for more direct management of sediment and thus radiocesium transfers in these Fukushima coastal catchments.

  11. Impact of adjacent land use on coastal wetland sediments.

    PubMed

    Karstens, Svenja; Buczko, Uwe; Jurasinski, Gerald; Peticzka, Robert; Glatzel, Stephan

    2016-04-15

    Coastal wetlands link terrestrial with marine ecosystems and are influenced from both land and sea. Therefore, they are ecotones with strong biogeochemical gradients. We analyzed sediment characteristics including macronutrients (C, N, P, K, Mg, Ca, S) and heavy metals (Mn, Fe, Cu, Zn, Al, Co, Cr, Ni) of two coastal wetlands dominated by Phragmites australis at the Darss-Zingst Bodden Chain, a lagoon system at the Southern Baltic Sea, to identify the impact of adjacent land use and to distinguish between influences from land or sea. In the wetland directly adjacent to cropland (study site Dabitz) heavy metal concentrations were significantly elevated. Fertilizer application led to heavy metal accumulation in the sediments of the adjacent wetland zones. In contrast, at the other study site (Michaelsdorf), where the hinterland has been used as pasture, heavy metal concentrations were low. While the amount of macronutrients was also influenced by vegetation characteristics (e.g. carbon) or water chemistry (e.g. sulfate), the accumulation of heavy metals is regarded as purely anthropogenic influence. A principal component analysis (PCA) based on the sediment data showed that the wetland fringes of the two study sites are not distinguishable, neither in their macronutrient status nor in their concentrations of heavy metals, whereas the interior zones exhibit large differences in terms of heavy metal concentrations. This suggests that seaside influences are minor compared to influences from land. Altogether, heavy metal concentrations were still below national precautionary and action values. However, if we regard the macronutrient and heavy metal concentrations in the wetland fringes as the natural background values, an accumulation of trace elements from agricultural production in the hinterland is apparent. Thus, coastal wetlands bordering croplands may function as effective pollutant buffers today, but the future development has to be monitored closely to avoid

  12. SEDIMENTATION IN PACIFIC NORTHWEST COASTAL STREAMS -- EVIDENCE FROM REGIONAL SURVEY OF BED SUBSTRATE SIZE AND STABILITY

    EPA Science Inventory

    Excessive erosion, transport and deposition of sediment are major problems in streams and rivers throughout the United States. We examined evidence of anthropogenic sedimentation in Oregon and Washington coastal streams using relatively rapid measurements taken from surveys duri...

  13. Coastal Upwelling off Chile: Ocean Productivity and Surface Sediments

    NASA Astrophysics Data System (ADS)

    Hebbeln, D.; Lamy, F.

    2002-12-01

    The coastal upwelling system of the Peru-Chile Current belongs to the most productive regions in the world oceans. In spite of this fact only very little is known about the sediment distribution in its southern part off the coast of Chile. To increase the knowledge about this region a multi-parameter study of the surface sediment distribution at over 100 sampling sites along the Chilean continental slope between 23°S and 45°S has been carried out. Detailed analyses of sedimentary data (TOC, carbonate, and biogenic opal contents, delta 15N) reveal a close relation to environmental conditions in the region. Coastal upwelling along the Chilean coast, centered around main upwelling centers such as off Antofagasta (23°S), off Lengua de Vaca (30°S), off Valparaiso (33°S), and off Concepci¢n (35-38°S), sustains the high productivity observed in satellite pigment data and in sediment data. However, the highest pigment concentrations are found south of 40°S where prevailing onshore winds of the Southern Westerlies generally prevent coastal upwelling. There, also highest estimated accumulation rates of organic carbon and biogenic opal at the sea floor are found. Thus, the general pattern of a southward increase of surface water productivity known from satellite data is closely reflected in the organic carbon, biogenic opal and ?15N data, although the observation of highest productivity south of the upwelling area is surprising. Probably, this high productivity in the south can be attributed to the advection of (macro-) nutrients by the Antarctic Circumpolar Current, supplying so-called high nutrient-low chlorophyll (HNLC) waters to the Chilean margin. Impinging on the Chilean margin these waters can take up micronutrients such as iron from the strong riverine input and from benthic exchange processes. The combination of macro- and micro-nutrients in this area most likely results in the high productivity of the area between 40°S and 45°S. From there these fertile

  14. Dynamic behaviour of coastal sedimentation in the Lions Gulf. [France

    NASA Technical Reports Server (NTRS)

    Guy, M. (Principal Investigator)

    1974-01-01

    The author has identified the following significant results. A number of ERTS-1 images covering this geographical zone were studied and compared with cartographic maps, air photographs, and thermal-IR images. Old and recent sediments leave traces in the landscape which are decoded by interpreting the shapes of the clear zones forming a network against the black background representing water and humid zones. Current sedimentation and its mechanism were investigated. It had been hoped that a regular sequence of images would make it possible to follow the dynamics of the Rhone and the coastal rivers in relation to meteorological conditions. In any event only a small number of images spread over a wide period of time were obtained, and a complete study was therefore impossible. However, in comparing some of the ERTS-1 images certain thermal-IR images and information on the flow of the Rhone provided some clarification of mechanisms associated with river dynamics.

  15. Dynamic sediment trapping and episodic sediment accretion in fluviodeltaic environments: Implications for coastal restoration

    NASA Astrophysics Data System (ADS)

    Shen, Z.; Tornqvist, T. E.; Chamberlain, E. L.; Esposito, C. R.; Marshak, J.; Nijhuis, A.; Sandoval, L.; Mauz, B.

    2013-12-01

    rates documented in this study suggest that coastal restoration by resuming the natural sedimentation processes has great potential to create net land elevation gain in the Mississippi Delta.

  16. An integrated coastal model for aeolian and hydrodynamic sediment transport

    NASA Astrophysics Data System (ADS)

    Baart, F.; den Bieman, J.; van Koningsveld, M.; Luijendijk, A. P.; Parteli, E. J. R.; Plant, N. G.; Roelvink, J. A.; Storms, J. E. A.; de Vries, S.; van Thiel de Vries, J. S. M.; Ye, Q.

    2012-04-01

    Dunes are formed by aeolian and hydrodynamic processes. Over the last decades numerical models were developed that capture our knowledge of the hydrodynamic transport of sediment near the coast. At the same time others have worked on creating numerical models for aeolian-based transport. Here we show a coastal model that integrates three existing numerical models into one online-coupled system. The XBeach model simulates storm-induced erosion (Roelvink et al., 2009). The Delft3D model (Lesser et al., 2004) is used for long term morphology and the Dune model (Durán et al., 2010) is used to simulate the aeolian transport. These three models were adapted to be able to exchange bed updates in real time. The updated models were integrated using the ESMF framework (Hill et al., 2004), a system for composing coupled modeling systems. The goal of this integrated model is to capture the relevant coastal processes at different time and spatial scales. Aeolian transport can be relevant during storms when the strong winds are generating new dunes, but also under relative mild conditions when the dunes are strengthened by transporting sand from the intertidal area to the dunes. Hydrodynamic transport is also relevant during storms, when high water in combination with waves can cause dunes to avalanche and erode. While under normal conditions the hydrodynamic transport can result in an onshore transport of sediment up to the intertidal area. The exchange of sediment in the intertidal area is a dynamic interaction between the hydrodynamic transport and the aeolian transport. This dynamic interaction is particularly important for simulating dune evolution at timescales longer than individual storm events. The main contribution of the integrated model is that it simulates the dynamic exchange of sediment between aeolian and hydrodynamic models in the intertidal area. By integrating the numerical models, we hope to develop a model that has a broader scope and applicability than

  17. Mercury Concentrations in Coastal Sediment from Younger Lagoon, Central California

    NASA Astrophysics Data System (ADS)

    Hohn, R. A.; Ganguli, P. M.; Swarzenski, P. W.; Richardson, C. M.; Merckling, J.; Johnson, C.; Flegal, A. R.

    2013-12-01

    Younger Lagoon Reserve, located in northern Monterey Bay, is one of the few relatively undisturbed wetlands that remain along the Central Coast of California. This lagoon system provides protected habitat for more than 100 bird species and for populations of fish, mammals, and invertebrates. Total mercury (HgT) concentrations in water within Younger Lagoon appear to vary with rainfall conditions and range from about 5-15 pM. These concentrations are similar to HgT in water from six nearby lagoon systems. However, Younger Lagoon contains elevated concentrations of dissolved organic carbon (~1 mM) and monomethylmercury (MMHg, ~1 pM) relative to our comparison lagoon sites (DOC < 0.5 mM and MMHg < 0.5 pM). We attribute Younger Lagoon's high DOC and MMHg to its restricted connection to the ocean and minor riverine contribution. Coastal lagoons in this region typically form at the mouth of streams. They behave as small estuaries during the wet season when surface water discharge keeps the mouth of the stream open to the ocean, and then transition into lagoons in the dry season when a sand berm develops and effectively cuts off surface water exchange. At Younger Lagoon, the sand berm remains intact throughout the year, breaching only during particularly high tides or intense rain events. Therefore, the lagoon's connection to nearshore seawater is primarily via surface water - groundwater interaction through the sand berm. Because Younger Lagoon is largely isolated from a surface water connection with the ocean, runoff from upgradient urban and agricultural land has an enhanced impact on water (and presumably sediment) quality. As a result, the lagoon is eutrophic and experiences annual algal blooms. Groundwater surveys suggest surface water, groundwater, and coastal seawater are hydraulically connected at Younger Lagoon, and mixing among these water masses appears to influence water geochemistry. To date, no chemical analyses have been conducted on sediment from Younger

  18. Heavy Metals Contamination in Coastal Sediments of Karachi, Pakistan

    NASA Astrophysics Data System (ADS)

    Siddique, A.; Mumtaz, M.; Zaigham, N. A.; Mallick, K. A.; Saied, S.; Khwaja, H. A.

    2008-12-01

    Toxic compounds such as heavy metals exert chronic and lethal effects in animals, plants, and human health. With the rapid industrialization, urbanization, and economic development in Karachi, heavy metals are continuing to be introduced to estuarine and coastal environment through rivers, runoff and land-based point sources. Pollution in the Karachi coastal region (167 km long) is mainly attributed to Lyari and Malir Rivers flowing through the city of Karachi. Both rivers are served by various channels of domestic and industrial wastes carrying more than 300 million gallons per day untreated effluent of 6000 industries and ultimately drain into the beaches of Arabian Sea. Concentrations of selected heavy metals (Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb, and Zn) in surface sediments from eighty-eight sites in Karachi coastal region were studied in order to understand metal contamination due to industrialization, urbanization, and economic development in Karachi. Sediment samples were collected in 2005 and 2006. We have found that heavy metal concentrations in surface sediments varied from 0.006 to 24.3 ug/g for Cd, 5.1 to 95 ug/g for Co, 2.9 to 571 ug/g for Cr, 6.9 to 272 ug/g for Cu, 0.55 to 6.5% for Fe, 1.2 to 318 ug/g for Mn, 7.5 to 75 ug/g for Ni, 6.3 to 121 ug/g for Pb, and 3.3 to 389 ug/g for Zn. Enrichment factors (EFs) were calculated to assess whether the concentrations observed represent background or contaminated levels. The highest levels of metals were found to be at the confluence of the Lyari and Malir River streams at the Arabian Sea, indicating the impact of the effluents of the highly urbanized and industrialized city of Karachi. Furthermore, this study assessed heavy metal toxicity risk with the application of Sediment Quality Guideline (SQG) indices (effect range low/effect range median values, ERL/ERM). Results indicated that the potential toxicity of marine environment can cause adverse biological effects to the biota directly and the human health

  19. A possible Blake event from coastal terrace sediment in Korea

    NASA Astrophysics Data System (ADS)

    Shim, T.; Lee, Y.; Suk, D.

    2011-12-01

    We report a possible Blake Excursion record with 117.1~111.8 ka from a coastal terrace eolian sediment sequence at Guryongpo area in the southeastern part of Korean Peninsula. The sequence is located at 22 meter above sea level, and is correlated to MIS 5e. A total of 158 discrete cube specimens were collected at every 2.5 cm intervals from the 390 cm section, in which fine sand layers are intercalated with mud layers, overlying the Tertiary tuffaceous basement. A stepwise IRM (Isothermal Remanent Magnetization) acquisition test for additional samples from the same section was performed up to 1.2 T. Saturation of IRM at about 300 mT indicates that magnetite is the main ferromagnetic mineral, implying that AF (alternating field) demagnetization of the sediment sample can be effective to obtain the characteristic remanent magnetization. Since the characteristic magnetizations of pilot specimens were revealed at or less than 10 mT AF demagnetization level, rest of the samples were treated by 10 mT AF demagnetization. Three short intervals of reversed or abnormal directions were observed at 27˜50 cmbs (centimeter below top surface), 190˜210 cmbs, and 250˜257 cmbs, respectively. These multiple periods of reversed polarity of the Blake event is supported by previous paleomagnetic results from China (Zhu et al., 1993; Fang et al., 1997) and from Italy (Creer et al., 1980). In addition, the OSL ages between 107 ka and 119 ka (Kim et al., 2005) for 50cm-interval sand samples from the same section strongly supports our conclusion. Key words : paleomagnetism, excursion, Blake event, coastal terrace sediment

  20. Mytilid mussels: global habitat engineers in coastal sediments

    NASA Astrophysics Data System (ADS)

    Buschbaum, Christian; Dittmann, Sabine; Hong, Jae-Sang; Hwang, In-Seo; Strasser, Matthias; Thiel, Martin; Valdivia, Nelson; Yoon, San-Pil; Reise, Karsten

    2009-03-01

    Dense beds of mussels of the family Mytilidae occur worldwide on soft-bottoms in cold and warm temperate coastal waters and have usually been considered hot spots of biodiversity. We examined intertidal mussel beds at four distant locations around the globe with the same sampling method, to find out whether this “hot spot” designation holds universally. We studied species assemblages within the matrices of byssally interconnected mussels engineered by Mytilus edulis in the North Sea, by mixed Perumytilus purpuratus and Mytilus chilensis at the southern Chilean coast, by Musculista senhousia in the Yellow Sea and by Xenostrobus inconstans at the coast of southern Australia. In all cases, species assemblages inside mussel beds were significantly different from those outside with many species being restricted to one habitat type. However, species richness and diversity were not generally higher in mussel beds than in ambient sediments without mussels. In the North Sea ( M. edulis) and at the Chilean coast ( P. purpuratus, M. chilensis), mussel beds have markedly higher species numbers and diversities than surrounding sediments, but this was not the case for mussel beds in Australia ( X. inconstans) and the Yellow Sea ( M. senhousia) where numbers of associated species were only slightly higher and somewhat lower than in adjacent sediments, respectively. In conclusion, although soft bottom mytilid mussels generally enhance habitat heterogeneity and species diversity at the ecosystem level, mussel beds themselves are not universal centres of biodiversity, but the effects on associated species are site specific.

  1. Factors controlling phosphorus release from sediments in coastal archipelago areas.

    PubMed

    Puttonen, Irma; Kohonen, Tuula; Mattila, Johanna

    2016-07-15

    In coastal archipelago areas of the northern Baltic Sea, significantly higher phosphate concentrations (6.0±4.5μmol/l, mean±SD) were measured in water samples close to the sediment surface compared with those from 1m above the seafloor (1.6±2.0μmol/l). The results indicated notable phosphate release from sediments under the bottom water oxygen concentrations of up to 250μmol/l, especially in areas that had experienced recent temporal fluctuation between oxic and hypoxic/anoxic conditions. No single factor alone was found to control the elevated PO4-P concentrations in the near-bottom water. In addition to the oxygen in the water, the contents of potentially mobile phosphorus fractions, grain-size, the organic content at the sediment surface, and the water depth were all important factors controlling the internal loading of phosphorus. The complexity of this process needs to be accounted for in assessments of the internal loading of phosphorus and in potential mitigation plans. PMID:27184132

  2. Deciphering the forcing factors of coastal evolution from a numerical chronology for a coastal sediment succession, Eastern Hengchun Peninsula, Taiwan

    NASA Astrophysics Data System (ADS)

    Lüthgens, Christopher; Ho, Lih-Der; Jen, Chia-Hung; Chyi, Shyh-Jeng

    2016-04-01

    Taiwan, an island with a high mountain area attaining almost 4000 m, is located in a unique position in East Asia at the transition from the subtropical to the tropical zone. The climate is driven by the East-Asian monsoon, which is responsible for a humid climate during the whole year. In addition, earthquakes, tropical storms, and typhoons trigger morphodynamic processes. Taiwan's coastal landscape is the result of complex interactions between marine and subaerial processes, sediment supply and local geology, plate tectonics, climate change, and global sea-level fluctuations. Unconsolidated sediments in coastal areas are known to preserve valuable information about these processes driving the coastal landscape evolution. In the Ganko river basin, located on the Eastern Hengchun peninsula in south-eastern Taiwan, climatic and tectonic forcing factors may have significantly influenced the natural sediment yield and sediment storage over time. In addition, in the recent past human influence within the river catchment may significantly have altered the sediment yield in the coastal areas close to the rivermouth. In order to reconstruct such variations and ideally relate them to either tectonic, climatic and anthropogenic forcing, a detailed analysis of sedimentary archives is essential. The area under investigation comprises a complex terrestrial river terrace record as well as a coastal sediment succession at the river outlet, both in parts aggraded above presumably tectonically uplifted near-shore sediments. Establishing a high resolution numerical chronology for these sediments may allow a reconstruction of sediment aggradation phases and stability phases for different sections of the catchment area from upstream fluvial terraces to coastal deposits, as well as the underlying near-shore deposits. A combination of two independent dating methods, optically stimulated luminescence (OSL) dating using the pIRIR150 signal of feldspar, as well as radiocarbon dating, was

  3. Coastal eutrophication thresholds: a matter of sediment microbial processes.

    PubMed

    Lehtoranta, Jouni; Ekholm, Petri; Pitkänen, Heikki

    2009-09-01

    In marine sediments, the major anaerobic mineralization processes are Fe(III) oxide reduction and sulfate reduction. In this article, we propose that the two alternative microbial mineralization pathways in sediments exert decisively different impacts on aquatic ecosystems. In systems where iron reduction dominates in the recently deposited sediment layers, the fraction of Fe(III) oxides that is dissolved to Fe(II) upon reduction will ultimately be transported to the oxic layer, where it will be reoxidized. Phosphorus, which is released from Fe(III) oxides and decomposing organic matter from the sediment, will be largely trapped by this newly formed Fe(III) oxide layer. Consequently, there are low concentrations of phosphorus in near-bottom and productive water layers and primary production tends to be limited by phosphorus (State 1). By contrast, in systems where sulfate reduction dominates, Fe(III) oxides are reduced by sulfides. This chemical reduction leads to the formation and permanent burial of iron as solid iron sulfides that are unable to capture phosphorus. In addition, the cycling of iron is blocked, and phosphorus is released to overlying water. Owing to the enrichment of phosphorus in water, the nitrogen : phosphorus ratio is lowered and nitrogen tends to limit algal growth, giving an advantage to nitrogen-fixing blue-green algae (State 2). A major factor causing a shift from State 1 to State 2 is an increase in the flux of labile organic carbon to the bottom sediments; upon accelerating eutrophication a critical point will be reached when the availability of Fe(III) oxides in sediments will be exhausted and sulfate reduction will become dominant. Because the reserves of Fe(III) oxides are replenished only slowly, reversal to State 1 may markedly exceed the time needed to reduce the flux of organic carbon to the sediment. A key factor affecting the sensitivity of a coastal system to such a regime shift is formed by the hydrodynamic alterations that

  4. Sources and fate of amino sugars in coastal Peruvian sediments

    NASA Astrophysics Data System (ADS)

    Niggemann, Jutta; Schubert, Carsten J.

    2006-05-01

    Amino sugars are involved in the marine carbon and nitrogen cycles and comprise a geochemically significant fraction of marine organic material (OM). However, information on abundance and distribution of these compounds in marine sediments is scarce. Three sediment cores (<50 cm) from the coastal region off Peru were investigated for concentrations of glucosamine (GlcN), galactosamine (GalN), mannosamine (ManN), and muramic acid (Mur). The sum of the four amino sugars accounted for 1.0-2.4% of organic carbon and 1.9-3.8% of nitrogen in the sediments. At the shallowest (102 m) and the deepest site (1278 m), carbon-normalized concentrations decreased down-core, suggesting preferential degradation of amino sugars compared to bulk sedimentary OM. At the site from the center of the oxygen minimum zone (238 m), amino sugar concentrations were high throughout the core, pointing to enhanced preservation of amino sugars under anoxic conditions. GlcN (44-56 mol%) and GalN (33-42 mol%) were the dominant amino sugars in all investigated samples, while ManN (6-14 mol%) and Mur (1-4 mol%) were significantly less abundant. Mur was predominantly associated with cell wall remains rather than with living bacteria, since bacterial abundances estimated based on Mur concentrations were up to 500 times higher than cell counts reported for sediments from this area. GlcN/GalN-ratios (1.1-1.7) indicated that chitin, a polymer of GlcN, was not a major contributor to the amino sugar pool of the investigated sediments. Furthermore, GlcN/Mur-ratios (13-68) are inconsistent with a predominant contribution of intact peptidoglycan, which exhibits a 1:1-ratio. The present study includes a compilation of previously published information on distribution and abundance of amino sugars in the marine environment. Both concentrations and ratios observed in the Peruvian sediments fall in the range of values reported for OM in water column and sediments from different oceanic regions and water depths

  5. Soil characteristics of sediment-amended baldcypress (Taxodium distichum) swamps of coastal Louisiana

    USGS Publications Warehouse

    Jiang, Ming; Middleton, Beth A.

    2011-01-01

    Amendments of sediment from dredging activities have played an important role in raising the elevation of sinking coastal wetlands. This study compared the soil characteristics of sediment- amended coastal swamps in the Barataria Preserve unit of Jean Lafitte National Historical Park and Preserve with natural swamps along Bayou des Familles. The sandy sediment amendments used in the coastal forests had different soil texture and characteristics than the more organic soils of the natural swamps. Three years after the application of these sediments on the sediment-amended swamps, dewatering and compaction of the sediment had occurred but the sediment still had high salinity and bulk density, and low organic matter content. The two sediment-amended swamps differed from each other in that Site 1 had a higher elevation (mean = 25 cm higher) and drier soil than Site 2. The effects of sediment in coastal forested wetlands require separate consideration from studies of salt marshes, e.g., the weight of the sediment might damage tree roots, or the amendments might influence soil stability during storms in a different way. Generally, this study suggests that shallower depths of sediment are more likely to yield environments beneficial to these sinking baldcypress swamps in coastal Louisiana.

  6. Early Diagenesis of Subseafloor Sandy Sediments Closely Related to Gas Hydrate Occurrences and Their Provenances in the Eastern Margin of Japan Sea

    NASA Astrophysics Data System (ADS)

    Uchida, T.; Sakai, H.; Horiuchi, S.; Matsumoto, R.

    2015-12-01

    A lot of effort have been put into recovering gas hydrate, methane induced carbonate, and associated sediments in order to develop the geologic model of gas hydrate accumulation and evaluate its possible environmental impact for the last glacial-interglacial cycles. Having investigated gas hydrate occurrences in the eastern margin of Japan Sea revealed wide distributions of chimney-shape gas hydrate concentrations beneath the seafloor, confirmed off Shimane and off Akita/Yamagata as well as off Joetsu (Niigata), which are quite different from the occurrences of pore space hydrate filling intergranular pore systems of sands recognized in Nankai Trough, Mallik and other sites. Many sediment samples have been obtained below from the Umitaka Spur, Joetsu Channel, Toyama Trough, Mogami Trough and Okushiri Ridge areas. Small amounts of sandy sediment have been retrieved as thin intercalations in Holocene and Pleistocene silty/muddy layers, where trace fossils and strong bioturbations are commonly observed. Sandy sediments consist of very fine- to fine-grained sand grains, and are sometimes tuffaceous. Pore-size distribution measurements and thin-section observations of these sands were carried out, which indicate that porosities of silty sediments are around 50 % but those of arenites range from 42 to 52 %, of which mean pore sizes and permeabilities are larger than those of silty sediments. These coarser sediments might have been transported approximately around 3 to 30 ka due to the tephra ages, where supplying sediments might be abundant due to sea level fluctuation during the Pleistocene ice age. Sandy sediments contain not only detrital quartz and feldspar but mafic minerals (pyroxene, amphibole and mica), contents of which may indicate their provenances. Silty/muddy sediments usually contain diatom tests, foraminifers and framboidal pyrites, and, in particular, the shapes of diatom are usually various, dominantly fragmental and infrequently preserved. It is

  7. Remote Sensing of Suspended Sediments and Shallow Coastal Waters

    NASA Technical Reports Server (NTRS)

    Li, Rong-Rong; Kaufman, Yoram J.; Gao, Bo-Cai; Davis, Curtiss O.

    2002-01-01

    Ocean color sensors were designed mainly for remote sensing of chlorophyll concentrations over the clear open oceanic areas (case 1 water) using channels between 0.4 and 0.86 micrometers. The Moderate Resolution Imaging Spectroradiometer (MODIS) launched on the NASA Terra and Aqua Spacecrafts is equipped with narrow channels located within a wider wavelength range between 0.4 and 2.5 micrometers for a variety of remote sensing applications. The wide spectral range can provide improved capabilities for remote sensing of the more complex and turbid coastal waters (case 2 water) and for improved atmospheric corrections for Ocean scenes. In this article, we describe an empirical algorithm that uses this wide spectral range to identifying areas with suspended sediments in turbid waters and shallow waters with bottom reflections. The algorithm takes advantage of the strong water absorption at wavelengths longer than 1 micrometer that does not allow illumination of sediments in the water or a shallow ocean floor. MODIS data acquired over the east coast of China, west coast of Africa, Arabian Sea, Mississippi Delta, and west coast of Florida are used in this study.

  8. Microplastics in coastal sediments from Southern Portuguese shelf waters.

    PubMed

    Frias, J P G L; Gago, J; Otero, V; Sobral, P

    2016-03-01

    Microplastics are well-documented pollutants in the marine environment that result from fragmentation of larger plastic items. Due to their long chemical chains, they can remain in the environment for long periods of time. It is estimated that the vast majority (80%) of marine litter derives from land sources and that 70% will sink and remain at the bottom of the ocean. Microplastics that result from fragmentation of larger pieces of plastic are common to be found in beaches and in the water surface. The most common microplastics are pellets, fragments and fibres. This work provides original data of the presence of microplastics in coastal sediments from Southern Portuguese shelf waters, reporting on microplastic concentration and polymer types. Microplastic particles were found in nearly 56% of sediment samples, accounting a total of 31 particles in 27 samples. The vast majority were microfibers (25), identified as rayon fibres, and fragments (6) identified as polypropylene, through infrared spectroscopy (μ-FTIR). The concentration and polymer type data is consistent with other relevant studies and reports worldwide. PMID:26748246

  9. Role of sediment resuspension in the remobilization of particulate-phase metals from coastal sediments

    USGS Publications Warehouse

    Kalnejais, Linda H.; Martin, William R.; Signell, Richard P.; Bothner, Michael H.

    2007-01-01

    The release of particulate-phase trace metals due to sediment resuspension has been investigated by combining erosion chamber experiments that apply a range of shear stresses typically encountered in coastal environments with a shear stress record simulated by a hydrodynamic model. Two sites with contrasting sediment chemistry were investigated. Sediment particles enriched in silver, copper, and lead, 4−50 times greater than the bulk surface-sediment content, were the first particles to be eroded. As the shear-stress level was increased in the chamber, the total mass eroded increased, but the enrichment of these trace metals fell, approaching the bulk-sediment content. From the temporal distribution of shear stress generated by the hydrodynamic model for a site in Boston Harbor, resuspension fluxes were estimated. The erosion threshold of this site is exceeded during spring tides, releasing the particles enriched in trace metals into the water column. Due to the higher trace metal content and the regularity of resuspension, low-energy resuspension events (up to a shear stress of 0.2 N/m2) contribute up to 60% of the resuspension metal flux in an average year. The estimated annual quantity of copper and lead resuspended into the water column is higher than estimates of the total riverine flux for these metals. These results indicate that sediment resuspension is a very important mechanism for releasing metals into the water column and provide new insight into the chemical and physical processes controlling the long-term fate of trace metals in contaminated sediments.

  10. Effect of physical sediments reworking on hydrocarbon degradation and bacterial community structure in marine coastal sediments.

    PubMed

    Duran, Robert; Bonin, Patricia; Jezequel, Ronan; Dubosc, Karine; Gassie, Claire; Terrisse, Fanny; Abella, Justine; Cagnon, Christine; Militon, Cecile; Michotey, Valérie; Gilbert, Franck; Cuny, Philippe; Cravo-Laureau, Cristiana

    2015-10-01

    The present study aimed to examine whether the physical reworking of sediments by harrowing would be suitable for favouring the hydrocarbon degradation in coastal marine sediments. Mudflat sediments were maintained in mesocosms under conditions as closer as possible to those prevailing in natural environments with tidal cycles. Sediments were contaminated with Ural blend crude oil, and in half of them, harrowing treatment was applied in order to mimic physical reworking of surface sediments. Hydrocarbon distribution within the sediment and its removal was followed during 286 days. The harrowing treatment allowed hydrocarbon compounds to penetrate the first 6 cm of the sediments, and biodegradation indexes (such as n-C18/phytane) indicated that biodegradation started 90 days before that observed in untreated control mesocosms. However, the harrowing treatment had a severe impact on benthic organisms reducing drastically the macrofaunal abundance and diversity. In the harrowing-treated mesocosms, the bacterial abundance, determined by 16S rRNA gene Q-PCR, was slightly increased; and terminal restriction fragment length polymorphism (T-RFLP) analyses of 16S rRNA genes showed distinct and specific bacterial community structure. Co-occurrence network and canonical correspondence analyses (CCA) based on T-RFLP data indicated the main correlations between bacterial operational taxonomic units (OTUs) as well as the associations between OTUs and hydrocarbon compound contents further supported by clustered correlation (ClusCor) analysis. The analyses highlighted the OTUs constituting the network structural bases involved in hydrocarbon degradation. Negative correlations indicated the possible shifts in bacterial communities that occurred during the ecological succession. PMID:25847440

  11. Assessment of organic pollutants in coastal sediments, UAE

    NASA Astrophysics Data System (ADS)

    Abdel Gawad, Esam A.; Al Azab, Mohamed; Lotfy, M. M.

    2008-05-01

    Twenty-five stations were selected along the UAE coastal region to delineate the distribution and to determine the source of total petroleum hydrocarbon (TPH), total organic carbon (TOC), total Kjeldhal nitrogen (TKN), polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs). The concentrations of TPH ranged between 46 and 223 mg/kg and the level of TOC was in the range from 0.044 to 17.8 wt%, while TPAHs occupied the range of 5-102.2 μg/kg. On the other hand, TPCBs showed values between 60 and 205 μg/kg and TKN ranged from 104 to 1,073 mg/kg. The present study shows that the distribution of organic compounds in UAE sediments were within safe limits comparing with previous studies. The present study revealed that TOC can be used as an indicator of oil pollution in heavily oiled sediments. The highest values of TOC, TPH, TPAHs and TPCBs related to the stations covered in fine sand due to adsorption properties and the large surface areas of the grains. The evaporation of low-boiling point compounds from surface layers leads to the enrichment of sediments with a thick residual. Al Sharjah-1 exhibited the highest values of TPH and TOC at Ras Al-Khaima-5, Umm Al-Quwen-1 and Dubai-1, while the highest values of TPAHs were at KhorFakkan-9, the highest value of TPCBs was at Ajman-2, and the highest values of TKN were at KhorFakkan-1, KhorFakkan-6 and Dubai-1.

  12. Leakage of CO2 from sub-seafloor CO2 storage sites to the seabed; Impacts on sediment microorganisms and geochemical parameters during in situ and laboratory leakage experiments

    NASA Astrophysics Data System (ADS)

    Reigstad, L. J.; Hannisdal, B.; Hoffmann, F. U.; Sweetman, A. K.; Baumberger, T.; Eickmann, B.; Røy, H.; Thorseth, I. H.; Pedersen, R. B.

    2013-12-01

    detected on all three levels in all depths investigated, but the response to acidification appeared among less-abundant prokaryotic groups in the sediment, rather than the numerically dominant groups. Quantification of the 16S rRNA genes (DNA level) indicated no increase in cell numbers in response to the treatment. However, an increase in the in situ microbial sulfate reduction rates and/or expression of marker genes for sulfate reduction (RNA level) was discovered. Analyses of marker gene expression for other prokaryotic metabolisms will be presented as well as correlations between specific organisms and geochemical parameters. Within the limitations of the experimental set up, our studies indicate that a leakage of CO2 from a sub-seafloor storage site may not dramatically change the composition of the active microbial community in the seabed sediment though we did register activity changes in some metabolisms.

  13. An improved sample preparation method for non-destructive analyses of fine-grained subseafloor sediments using micro-focus X-ray CT and SEM

    NASA Astrophysics Data System (ADS)

    Uramoto, G.; Morono, Y.; Uematsu, K.; Inagaki, F.

    2012-12-01

    Spatial arrangement of particles in fine-grained marine subsurface sediments is a key factor for the physical property of sediments. The pore space provides micro-niches for chemical, physical, and microbiological components in the subsurface geosphere and biosphere. However, the standard techniques conventionally used for the sample preparation have some critical issues to understand accurate nature of fine-scale particle arrangement because of the possible deformation of micro-structures during the sample fixation. Here we tested the resin-embedding method for ocean drilling core samples, which technique has been applied mainly for biological samples. Using micro-focus X-ray CT-computed tomography and SEM we compared the images with the conventional t-butyl alcohol freeze-drying methods. Using the t-butyl alcohol freeze-dried sediment samples, we observed large number of micrometer-scale cracks in both SEM and X-CT image analyses, indicating the significant disturbance of sediment microstructure during sample processing. On the other hand, when we employed mini-coring, agar infiltration, and related biological sample-processing techniques for the resin-embedding method, no observable cracks were evident, most likely due to the rapid resin impregnation into sediments without sample drying. On SEM images of the flattened sample surface, we compared the porosity assessed with the resin-embedded samples to those measured onboard by the moisture and density method, showing a good agreement of the porosity values. In high-porosity surficial sediments embedded with resin, we observed structures that sediment particles are floating in the space, which may represent the results of physico-chemical interaction among sediment particles. However, almost no such particle arrangements were observed in t-butyl alcohol freeze-dried samples, indicating that drying of interstitial fluids may impact on the physico-chemical forces within particulate compounds. Conclusively, our

  14. Sedimentation in the coastal reefs of Abrolhos over the last decades

    NASA Astrophysics Data System (ADS)

    Silva, A. S.; Leão, Z. M. A. N.; Kikuchi, R. K. P.; Costa, A. B.; Souza, J. R. B.

    2013-11-01

    Coral reefs of the coastal area of Abrolhos are located in an environment with a high influx of terrigenous sediments that are carried out to the sea, either as a result of natural processes (river output, coastal erosion, and torrents) or due to anthropogenic influences (deforestation, coastal development, and dredging). Excessive terrigenous sediment in coastal areas has been identified as one of the major threats to coral reefs, leading to their worldwide decline. The present study assessed the evolution of sedimentation in the Abrolhos coastal reefs during the past decades by analyzing samples from sediment cores collected near the reefs of Coroa Vermelha (located 15 km from the coast), Pedra de Leste (located 12 km from the coast) and Popa Verde (located 35 km from the coast). The purpose of this assessment was to observe whether the previously described pattern of surficial bottom sediment distribution in Abrolhos, which consisted of terrigenous mud in the nearshore reefs, to carbonate-dominant sediments towards the offshore reefs, is still a prevalent feature. Sediment color, texture, CaCO3 percentage, biogenic compounds and clay minerals, as well as the sedimentation rate and the geochronology of the sediment cores were analyzed. The results showed indications of an increase in the deposition of terrigenous mud, over the last decade, in the vicinity of the reefs nearest to the coast, though this does not yet constitute a definitive evidence of such a change. However, this observation therefore suggests that local processes resulting from anthropogenic actions are most likely causing an increase of the sedimentation rate of continent-derived sediment runoff in the Abrolhos coastal areas. To minimize this situation, there is an urgent need for the development of new management strategies to protect the already disturbed Abrolhos coastal reefs, especially during times of global changes.

  15. Assessment of heavy metal levels in surface sediments of estuaries and adjacent coastal areas in China

    NASA Astrophysics Data System (ADS)

    Liu, Xianbin; Li, Deliang; Song, Guisheng

    2016-05-01

    This article investigates the variations of contamination levels of heavy metals such as copper, lead, chromium, cadmium, zinc, arsenic, and mercury over time in surface sediments of the Changjiang River Estuary (CRE), Yellow River Estuary (YRE), Pearl River Estuary (PRE), and their adjacent coastal areas in China. The contamination factor (CF), pollution load index (PLI), and geoaccumulation index (I geo) are used to evaluate the quality of the surface sediments in the study areas. The results showed that the CRE, YRE, and their adjacent coastal areas were at a low risk of contamination in terms of heavy metals, while the PRE and its adjacent coastal area were at a moderate level. By comparison, the concentrations of heavy metals in the surface sediments of the YRE and its adjacent coastal area were relatively lower than those in the CRE, PRE, and their adjacent coastal areas.

  16. Bacterial Growth, Necromass Turnover, And Endospore Abundance In The Deep Subseafloor Sediments Of The Greenland Shelf Using D:L Amino Acid Model.

    NASA Astrophysics Data System (ADS)

    Mhatre, S. S.; Braun, S.; Jaussi, M.; Røy, H.; Jørgensen, B. B.; Lomstein, B. A.

    2015-12-01

    The subsurface realm is colonized by a large number of microorganisms- about 3 × 1029. Microbial cells in these very stable and oligotrophic settings catabolize at a much slower rate than model organisms in nutrient rich cultures. The aim of this work was to use recently developed D:L-amino acid racemization model for studying the turnover times of microbial biomass and microbial necromass in a ~12,000 years old Greenland shelf marine sediment samples. Sediments were analyzed for total hydrolysable amino acids (THAA), the bacterial endospore marker dipicolinic acid (DPA), and amino acid enantiomers of aspartic acid. The percentage amino acid carbon content (%TAAC) and the percentage amino acid nitrogen content (%TAAN) were used for determining the degradation state of the organic matter. Endospores quantified using DPA quantification method were found to be as abundant as vegetative cells. The microbial necromass turnover times were thousand years, and biomass turnover times were in the range of tens to hundred years. Studies with deeper sediment cores will further improve our understanding of the energetic limits of life in the deep biosphere.

  17. Evolution of radioactive dose rates in fresh sediment deposits along coastal rivers draining Fukushima contamination plume

    PubMed Central

    Evrard, Olivier; Chartin, Caroline; Onda, Yuichi; Patin, Jeremy; Lepage, Hugo; Lefèvre, Irène; Ayrault, Sophie; Ottlé, Catherine; Bonté, Philippe

    2013-01-01

    Measurement of radioactive dose rates in fine sediment that has recently deposited on channel bed-sand provides a solution to address the lack of continuous river monitoring in Fukushima Prefecture after Fukushima Dai-ichi nuclear power plant (FDNPP) accident. We show that coastal rivers of Eastern Fukushima Prefecture were rapidly supplied with sediment contaminated by radionuclides originating from inland mountain ranges, and that this contaminated material was partly exported by typhoons to the coastal plains as soon as by November 2011. This export was amplified during snowmelt and typhoons in 2012. In 2013, contamination levels measured in sediment found in the upper parts of the catchments were almost systematically lower than the ones measured in nearby soils, whereas their contamination was higher in the coastal plains. We thereby suggest that storage of contaminated sediment in reservoirs and in coastal sections of the river channels now represents the most crucial issue. PMID:24165695

  18. THE CONDITION OF THE NATION'S ESTURINE SEDIMENTS: EPA'S NATIONAL COASTAL ASSESSMENT

    EPA Science Inventory

    Summers, J. Kevin. In press. Condition of the Nation's Estuarine Sediments: EPA's National Coastal Assessment (Abstract). To be presented at the SETAC Fourth World Congress, 14-18 November 2004, Portland, OR. 1 p. (ERL,GB R1001).

    The purpose of EPA's National Coastal Asse...

  19. Bacterial diversity in oil-polluted marine coastal sediments.

    PubMed

    Acosta-González, Alejandro; Marqués, Silvia

    2016-04-01

    Marine environments harbour a persistent microbial seed which can be shaped by changes of the environmental conditions such as contamination by petroleum components. Oil spills, together with small but continuous discharges of oil from transportation and recreational activities, are important sources of hydrocarbon pollution within the marine realm. Consequently, prokaryotic communities have become well pre-adapted toward oil pollution, and many microorganisms that are exposed to its presence develop an active degradative response. The natural attenuation of oil pollutants, as has been demonstrated in many sites, is modulated according to the intrinsic environmental properties such as the availability of terminal electron acceptors and elemental nutrients, together with the degree of pollution and the type of hydrocarbon fractions present. Whilst dynamics in the bacterial communities in the aerobic zones of coastal sediments are well characterized and the key players in hydrocarbon biodegradation have been identified, the subtidal ecology of the anaerobic community is still not well understood. However, current data suggest common patterns of response in these ecosystems. PMID:26773654

  20. Use of sediment amendments to rehabilitate sinking coastal swamp forests in Louisiana

    USGS Publications Warehouse

    Middleton, Beth A.; Jiang, Ming

    2013-01-01

    Coastal wetlands are losing elevation worldwide, so that techniques to increase elevation such as sediment amendment might benefit these wetlands. This study examined the potential of sediment amendment to raise elevation and support the production and regeneration of vegetation in coastal forests in Louisiana. Before sediment amendment, the vegetation did not differ in these Taxodium distichum–Nyssa aquatica forests with respect to herbaceous and tree seedling composition, and sapling and tree characteristics. After the application of sediment in January 2007, sediment-amended swamps had higher elevations and salinity levels than natural swamps. The layer of sediment applied to Treasure Island in Jean Lafitte National Historic Park and Preserve was relatively deep (sediment depth at Site One and Site Two: 0.89 and 0.69 m, respectively, six months after application), and may have exceeded an optimal threshold. Sediment-amended swamp with the highest elevation had some tree mortality and little tree growth of T. distichum. Also, sediment-amended swamp had higher root biomasses of ruderal species, and lower species richness and cover of herbaceous species. Nevertheless, during controlled water releases during an oil spill emergency in 2010, both sediment-amended and reference forest had higher production levels than in other years. While sediment amendment is a compelling management alternative for sinking coastal wetlands, optimal thresholds were not determined for these T. distichum–N. aquatica swamps.

  1. Organic Phosphorus in the Deep Subseafloor Environment

    NASA Astrophysics Data System (ADS)

    Defforey, D.; Paytan, A.

    2014-12-01

    Phosphorus (P) is a macronutrient involved both in functional and structural components of all living cells. This makes it an essential nutrient for life, including microbial life in the deep subseafloor habitat. P availability in this environment is limited since organic matter is scarce and P is thought to be mainly present in refractory mineral phases. However, recent estimates suggest that the deep biosphere may contain up to 1% of Earth's total biomass, which implies that microorganisms may possess mechanisms to harvest recalcitrant phosphorus compounds in this environment. In addition, the role of the organic P pool in this setting is poorly understood and could be of great importance should it represent an important P pool fueling the deep biosphere. This study aims to identify and quantify organic P compounds in open ocean sediments using our newly developed sequential extraction procedure for 31P nuclear magnetic resonance spectroscopy (31P NMR). This method amplifies the signal of organic P in spectra by increasing its concentration and quantitatively removing the majority of inorganic P. Briefly, P bound to iron oxyhydroxides is removed from sediment samples during a reductive step; then, P in authigenic and biogenic apatite is solubilized over the course of an extraction in an acidic buffer. These two steps remove the majority of inorganic P from the sample. Lastly, the residue is extracted in 0.25M NaOH+ 0.05M Na2EDTA and the supernatant is frozen and lyophilized prior to 31P NMR analysis. This method will be applied to sediment samples from North Pond (IODP expedition 336), an isolated sediment pond on the western flank of the Mid-Atlantic ridge. This work will provide valuable insight into the diagenetic processes affecting organic P in open ocean sediments and into possible nutrient sources to the deep biosphere.

  2. Composite refraction-reflection stack sections: Tracing faults in the Atlantic coastal plain sediments

    SciTech Connect

    Stephenson, D.E.; Coruh, C.; Costain, J.K.

    1993-05-01

    Seismic data from the Atlantic Coastal Plain are reprocessed and composite refraction-reflection stack sections produced to investigate basement faults that penetrate upward into Atlantic Coastal Plain sediments in South Carolina. Reprocessing recovered reflections from within the deep crust to the Moho as well as from within thin veneer (300) of the Atlantic Coastal Plain sediments. One of the major objectives of this paper is to discuss the use of shallow refracted arrivals to construct a composite refraction- reflection stack that allows better imaging of the subsurface at shallow depths.

  3. Spatial variability and the fate of cesium in coastal sediments near Fukushima, Japan

    NASA Astrophysics Data System (ADS)

    Black, E.; Buesseler, K. O.

    2014-05-01

    Quantifying the amount of cesium incorporated into marine sediments as a result of the Fukushima Dai-ichi Nuclear Power Plant (FDNPP) accident has proven challenging due to the limited multi-core sampling from within the 30 km zone around the facility, the inherent spatial heterogeneities in ocean sediments, and the potential for inventory fluctuations due to physical, biological, and chemical processes. Using 210Pb, 234Th, 137Cs, and 134Cs profiles from 20 sediment cores, coastal sediment inventories were reevaluated. A minimum 137Cs sediment inventory of 100 ± 50 TBq was found for an area of 55 000 km2 using cores from this study and a total of 130 ± 60 TBq using an additional 181 samples. These inventories represent less than 1% of the estimated 15-30 PBq of cesium released during the FDNPP disaster and constitute ~ 90% of the total coastal inventory of 137Cs remaining in 2012. The time needed for surface sediment activities (0 to 3 cm) at the 20 locations to reduce by 50% via bioturbation was estimated to range from 0.4 to 26 years, indicating a much greater persistence of cesium in the sediments relative to coastal water activities. However, due to the observed variability in mixing rates, grain size, and inventories, additional cores are needed to further improve estimates and capture the full extent of cesium penetration into the shallow coastal sediments, which was deeper than 14 cm for all cores retrieved from water depths less than 150 m.

  4. SEDIMENT HABITAT ASSESSMENT FOR TARGETED NEAR-COASTAL AREAS OF THE GULF OF MEXICO: A SUMMARY

    EPA Science Inventory

    Lewis, Michael A. In press. Sediment Habitat Assessment for Targeted Near-Coastal Areas of the Gulf of Mexico: A Summary. In: Estuarine Indicators Workshop Proceedings. CRC Press, Boca Raton, FL. 25 p. (ERL,GB 1201).

    Sediment chemical and biological quality is summarized ...

  5. TREATED WASTEWATER AS A SOURCE OF SEDIMENT CONTAMINATION IN GULF OF MEXICO NEAR-COASTAL AREAS

    EPA Science Inventory

    The primary objective of this baseline survey was to provide some needed perspective on the magnitude of sediment contamination associated with wastewater outfalls discharged to Gulf of Mexico near-coastal areas. The chemical quality and toxicities of whole sediments and pore wa...

  6. SEDIMENT HAZARD ASSESSMENT FOR NEAR-COASTAL AREAS OF THE GULF OF MEXICO

    EPA Science Inventory

    Sediment contamination is a major problem in many coastal areas in the U.S. and has emerged as an important ecological issue for several geographic areas. Sediment chemical and biological quality is unknown in many areas of the Gulf of Mexico. To provide some information on this ...

  7. Evaluation of the contamination of platinum in estuarine and coastal sediments (Tagus Estuary and Prodelta, Portugal).

    PubMed

    Cobelo-García, Antonio; Neira, Patricia; Mil-Homens, Mario; Caetano, Miguel

    2011-03-01

    Platinum contamination in estuarine and coastal sediments has been evaluated in three cores collected from the Tagus Estuary and Prodelta shelf sediments. Elevated concentrations, up to 25-fold enrichment compared to background values, were found in the upper layers of the estuarine sediments. The degree of Pt enrichment in the estuarine sediments varied depending on the proximity to vehicular traffic sources, with a maximum concentration of 9.5 ng g(-1). A considerable decrease of Pt concentrations with depth indicated the absence of significant contamination before the introduction of catalytic converters in automobiles. Platinum distribution in the Tagus Prodelta shelf sediment core showed no surface enrichment; instead a sub-surface maximum at the base of the mixed layer suggested the possibility of post-depositional mobility, thereby blurring the traffic-borne contamination signature in coastal sediments. PMID:21256526

  8. Mariniphaga sediminis sp. nov., isolated from coastal sediment.

    PubMed

    Wang, Feng-Qing; Shen, Qi-Yao; Chen, Guan-Jun; Du, Zong-Jun

    2015-09-01

    A Gram-stain-negative and facultatively anaerobic bacterium, SY21(T), was isolated from marine sediments of the coastal area in Weihai, China (122° 0' 37" E 37° 31' 33" N). Cells of strain SY21(T) were 0.3-0.5 μm wide and 1.5-2.5 μm long, catalase- and oxidase-positive. Colonies on 2216E agar were transparent, beige- to pale-brown-pigmented, and approximately 0.5 mm in diameter. Growth occurred optimally at 33-37 °C, pH 7.0-7.5 and in the presence of 2-3% (w/v) NaCl. Phylogenetic analysis of the 16S rRNA gene indicated that strain SY21(T) was a member of the genus Mariniphaga within the family Prolixibacteraceae. The closest described neighbour in terms of 16S rRNA gene sequences identity was Mariniphaga anaerophila Fu11-5(T) (94.7%). The major respiratory quinone of strain SY21(T) was MK-7, and the dominant fatty acids were iso-C15 : 0, iso-C17 : 0 3-OH and anteiso-C15 : 0. The major polar lipids were phosphatidylethanolamine, aminolipid and an unidentified lipid, and the DNA G+C content was 37.9 mol%. The distinct phylogenetic position and phenotypic traits distinguished the novel isolate from M. anaerophila Fu11-5(T). Phenotypic and genotypic analysis indicated that strain SY21(T) could be assigned to the genus Mariniphaga. The name Mariniphaga sediminis sp. nov. is proposed, with the type strain SY21(T) ( = KCTC 42260(T) = MCCC 1H00107(T)). PMID:26012581

  9. Trends in the suspended-sediment yields of coastal rivers of northern California, 1955–2010

    USGS Publications Warehouse

    Warrick, J.A.; Madej, M.A.; Goñi, M. A.; Wheatcroft, R.A.

    2013-01-01

    Time-dependencies of suspended-sediment discharge from six coastal watersheds of northern California – Smith River, Klamath River, Trinity River, Redwood Creek, Mad River, and Eel River – were evaluated using monitoring data from 1955 to 2010. Suspended-sediment concentrations revealed time-dependent hysteresis and multi-year trends. The multi-year trends had two primary patterns relative to river discharge: (i) increases in concentration resulting from both land clearing from logging and the flood of record during December 1964 (water year 1965), and (ii) continual decreases in concentration during the decades following this flood. Data from the Eel River revealed that changes in suspended-sediment concentrations occurred for all grain-size fractions, but were most pronounced for the sand fraction. Because of these changes, the use of bulk discharge-concentration relationships (i.e., “sediment rating curves”) without time-dependencies in these relationships resulted in substantial errors in sediment load estimates, including 2.5-fold over-prediction of Eel River sediment loads since 1979. We conclude that sediment discharge and sediment discharge relationships (such as sediment rating curves) from these coastal rivers have varied substantially with time in response to land use and climate. Thus, the use of historical river sediment data and sediment rating curves without considerations for time-dependent trends may result in significant errors in sediment yield estimates from the globally-important steep, small watersheds.

  10. Subseafloor basalts as fungal habitats

    NASA Astrophysics Data System (ADS)

    Ivarsson, M.; Bengtson, S.

    2013-12-01

    The oceanic crust makes up the largest potential habitat for life on Earth, yet next to nothing is known about the abundance, diversity and ecology of its biosphere. Our understanding of the deep biosphere of subseafloor crust is, with a few exceptions, based on a fossil record. Surprisingly, a majority of the fossilized microorganisms have been interpreted or recently re-interpreted as remnants of fungi rather than prokaryotes. Even though this might be due to a bias in fossilization the presence of fungi in these settings can not be neglected. We have examined fossilized microorganisms in drilled basalt samples collected at the Emperor Seamounts in the Pacific Ocean. Synchrotron-radiation X-ray tomography microscopy (SRXTM) studies has revealed a complex morphology and internal structure that corresponds to characteristic fungal morphology. Chitin was detected in the fossilized hyphae, which is another strong argument in favour of a fungal interpretation. Chitin is absent in prokaryotes but a substantial constituent in fungal cell walls. The fungal colonies consist of both hyphae and yeast-like growth states as well as resting structures and possible fruit bodies, thus, the fungi exist in vital colonies in subseafloor basalts. The fungi have also been involved in extensive weathering of secondary mineralisations. In terrestrial environments fungi are known as an important geobiological agent that promotes mineral weathering and decomposition of organic matter, and they occur in vital symbiosis with other microorganisms. It is probable to assume that fungi would play a similar role in subseafloor basalts and have great impact on the ecology and on biogeochemical cycles in such environments.

  11. Sources, dispersal, and fate of fine sediment supplied to coastal California

    USGS Publications Warehouse

    Farnsworth, Katherine L.; Warrick, Jonathan A.

    2007-01-01

    We have investigated the sources, dispersal, and fate of fine sediment supplied to California coastal waters in a partnership between the U.S. Geological Survey (USGS) and the California Sediment Management Workgroup (CSMW). The purpose of this study was to document the rates and characteristics of these processes so that the State can better manage its coastal resources, including sediment. In this study, we made the following observations: - Rivers dominate the supply of fine sediment to the California coastal waters, with an average annual flux of 34 megatonnes (Mt). - Cliff and bluff erosion in central and southern California is a source of fine sediment, with a delivery rate of approximately 10 percent of river loads. In the southern most part of the State, however, where river-sediment loads are low, cliff and bluff erosion represent approximately 40 percent of the total fine-sediment flux. - Temporal variation in the sources of fine sediment is high. River floods and bluff erosion are episodic and dominated by winter storms, which supply most sediment flux to the coast. The magnitude of winter storms is generally related to the El Niño-Southern Oscillation (ENSO) and Pacific Decadal Oscillation (PDO) climate cycles. - The three rivers that dominate fine-sediment flux to the California coast are the Eel, Salinas, and Santa Clara Rivers. Because the sediment delivery from these and all other California coastal watersheds is episodic, individual rivers discharge most of their annual loads over the course of only a few days per year. - Spatial variation in river-sediment discharge is high and generally related to such watershed characteristics as geology, precipitation, and drainage area. For example, the Transverse Range of southern California represents only 9 percent of the watershed-drainage area but 18 percent of the fine-sediment flux, a function of the young sedimentary bedrock and active tectonics of this region. The urban rivers of southern California

  12. Assessing sediment connectivity to understand dynamics of contaminated sediment within coastal catchments of Fukushima Prefecture (Japan)

    NASA Astrophysics Data System (ADS)

    Chartin, Caroline; Evrard, Olivier; Onda, Yuichi; Ottlé, Catherine; Brossoni, Camille; Lefèvre, Irène; Lepage, Hugo; Bonté, Philippe; Patin, Jeremy; Ayrault, Sophie

    2013-04-01

    The Fukushima Dai-ichi Nuclear Power Plant accident has led to the release of large radionuclide quantities (e.g., about 20 PBq of Cs-137 and 200 PBq of I-131) into the atmosphere. About 80% of the release was blown out and over the Pacific Ocean. The remaining 20% of emissions were deposited as wet and dry deposits on soils of Fukushima Prefecture, mainly between 15-16 March. As most radionuclides are strongly sorbed by fine particles, they are likely to be redistributed within the landscape in association with soil and sediment particles transported by runoff and erosion processes. A spatial analysis of Ag-110m:Cs-137 ratio in soils and river sediments provided a way to trace those transfers. This fingerprinting study showed that particles eroded from inland mountain ranges exposed to the highest initial radionuclide fallout were already dispersed along coastal rivers, most likely during summer typhoons and spring snowmelt. Those results suggest that hillslopes and rivers have become a perennial source of radioactive contaminants to the Pacific Ocean off Fukushima Prefecture. This study aims to specify the location and nature of the preferential sources supplying contaminated material to the main rivers draining the Fukushima contamination plume. To this end, important parameters controlling soil erosion and sediment transfers within catchments, i.e. landscape morphology and land use characteristics, were preliminary derived from DEM data and satellite images for the River Mano, Nitta and Ota catchments (ca. 525 km²) draining the most radioactive part of the contamination plume that formed across Fukushima Prefecture. Then, those data were used to compute indices assessing the potential sediment connectivity (i) between hillslopes and rivers and (ii) between hillslopes and catchment outlets. Finally, spatially-distributed values of connectivity indices were confronted to gamma-emitting radionuclide activities (Cs-134, Cs-137 and Ag-110m) measured in riverbed

  13. Complete genome sequence of the xylan-degrading subseafloor bacterium Microcella alkaliphila JAM-AC0309.

    PubMed

    Kurata, Atsushi; Hirose, Yuu; Misawa, Naomi; Wakazuki, Sachiko; Kishimoto, Noriaki; Kobayashi, Tohru

    2016-03-10

    Here we report the complete genome sequence of Microcella alkaliphila JAM-AC0309, which was newly isolated from the deep subseafloor core sediment from offshore of the Shimokita Peninsula of Japan. An array of genes related to utilization of xylan in this bacterium was identified by whole genome analysis. PMID:26808869

  14. A Numerical Study of Tidal Impacts on Denitrification and Redox Zonation in Coastal Sediments

    NASA Astrophysics Data System (ADS)

    Knights, D. H.; Sawyer, A. H.

    2014-12-01

    In coastal settings, tidally induced surface water-groundwater exchange (tidal pumping) controls nitrate fluxes between sediments and the water column and denitrification rates in shallow sediments. A one-dimensional, coupled fluid flow and solute transport model was used to capture the influence of tidal pumping on redox zonation and nitrate removal in sediments within coastal settings such as tidal rivers, deltas, and marshes. Upwelling groundwater was assumed to be rich in nitrate but low in dissolved oxygen (DO) and dissolved organic carbon (DOC). Tidal pumping enhances exchange of DO-rich surface water across the sediment-water interface and creates a deep, oscillating zone of aerobic respiration. Relative to non-tidal conditions, denitrification rates are diminished. As redox conditions shift with spring-neap tides, redox gradients should also shift and drive a change in denitrification rates within aquatic sediments.

  15. Coastal Marsh Sediments from Bodega Harbor: Archives of Environmental Changes at the Terrestrial-Marine Interface

    NASA Astrophysics Data System (ADS)

    Rademacher, L. K.; Rong, Y.; Hill, T. M.; Hiromoto, C.; Fisher, A.

    2010-12-01

    Coastal marsh sediments provide an important archive of environmental changes at the terrestrial-marine interface. Over the last century, humans have significantly altered the coastal environment near Bodega Bay, California, through changes in hydrology, sediment sources, and the dominant ecosystem. Previous investigations of recent coastal marsh sediments (< 50 years) suggest that physical barriers, such as roads, which limit the connection between Bodega Bay and the marshes, alters biogeochemical cycling (including carbon storage) in the coastal environment. The present study extends the record of changes in biogeochemical cycling in the coastal marshes back more than 100 years (approximately 90 cm) through the use of grain size analysis, C and N isotopes, and age dating. Sediments were analyzed for grain size distribution, the amount of carbon and nitrogen, and the stable isotopes of carbon and nitrogen in 1 cm intervals throughout the core. In addition, a subset of eight samples was analyzed for sediment age using a combination of Pb-210 and Cs-137 techniques. Sediments from >40 cm and <55 cm depth have a higher percentage of fine-grained sediment (>2%). In addition, these sediments also contain higher levels of total organic carbon and nitrogen, higher C:N ratios, we well as heavier carbon and nitrogen isotopic signatures. The sediments likely correspond to a pre-1900 depositional environment based on Pb-210 dates, when development in the region was increasing. These results suggest a stronger influence of the marine environment during that time. Interestingly, smaller transitions in sediment properties toward what appears to reflect a more marine environment also occur near the top of the core (<10 cm depth) and near the bottom of the core (>75 cm depth). Although these transitions are less pronounced, the significant shift in sediment properties suggests a less stable environment with greater communication between the terrestrial and marine environments

  16. Living Landscapes: Present and Past Interactions Between Coastal Sediments and Biota

    NASA Astrophysics Data System (ADS)

    Mariotti, G.

    2014-12-01

    Since the dawn of life, sedimentary landscapes have been interacting with biota. This is particularly evident in coastal environments, where sediment transport and production are strongly influenced by microbes, plants and animals. Here I will discuss examples ranging from erosion of modern coastal wetlands to evidence of early life in sedimentary rocks. Using mathematical models and laboratory experiments I will investigate processes and present new perspectives at the border between geomorphology, ecology and paleontology.

  17. Morphology of Mediterranean coastal sediments and its relation to oil pollution

    SciTech Connect

    Barakat, M.A.K.; Shimy, T.M.; Soliman, M.

    1997-02-01

    This study describes the hazards of marine oil pollution and associated chemicals and wastes and clarifies the importance of reducing oil inputs in coastal and offshore waters. It includes oil spill responses as well as wastes from offshore petroleum operations. This study is carried out mainly in order to clarify the morphological characteristics of the polluted coastal sediments along the Mediterranean shoreline from Marsa Matrouh to El-Arish.

  18. Observations of coastal sediment dynamics of the Tijuana Estuary Fine Sediment Fate and Transport Demonstration Project, Imperial Beach, California

    USGS Publications Warehouse

    Warrick, Jonathan A.; Rosenberger, Kurt J.; Lam, Angela; Ferreiera, Joanne; Miller, Ian M.; Rippy, Meg; Svejkovsky, Jan; Mustain, Neomi

    2012-01-01

    Coastal restoration and management must address the presence, use, and transportation of fine sediment, yet little information exists on the patterns and/or processes of fine-sediment transport and deposition for these systems. To fill this information gap, a number of State of California, Federal, and private industry partners developed the Tijuana Estuary Fine Sediment Fate and Transport Demonstration Project ("Demonstration Project") with the purpose of monitoring the transport, fate, and impacts of fine sediment from beach-sediment nourishments in 2008 and 2009 near the Tijuana River estuary, Imperial Beach, California. The primary purpose of the Demonstration Project was to collect and provide information about the directions, rates, and processes of fine-sediment transport along and across a California beach and nearshore setting. To achieve these goals, the U.S. Geological Survey monitored water, beach, and seafloor properties during the 2008–2009 Demonstration Project. The project utilized sediment with ~40 percent fine sediment by mass so that the dispersal and transport of fine sediment would be easily recognizable. The purpose of this report is to present and disseminate the data collected during the physical monitoring of the Demonstration Project. These data are available online at the links noted in the "Additional Digital Information" section. Synthesis of these data and results will be provided in subsequent publications.

  19. The impact of electrogenic sulfide oxidation on elemental cycling and solute fluxes in coastal sediment

    NASA Astrophysics Data System (ADS)

    Rao, Alexandra M. F.; Malkin, Sairah Y.; Hidalgo-Martinez, Silvia; Meysman, Filip J. R.

    2016-01-01

    Filamentous sulfide oxidizing cable bacteria are capable of linking the oxidation of free sulfide in deep anoxic layers of marine sediments to the reduction of oxygen or nitrate in surface sediments by conducting electrons over centimeter-scale distances. Previous studies have shown that this newly discovered microbial process, referred to as electrogenic sulfide oxidation (e-SOx), may alter elemental cycling in sediments, but the nature and rates of the resulting biogeochemical transformations and their influence on benthic-pelagic coupling remain largely unknown. Here we quantify changes in sediment geochemistry and solute fluxes at the sediment-water interface as e-SOx develops and declines over time in laboratory incubations of organic-rich sediments from a seasonally hypoxic coastal basin (Marine Lake Grevelingen, The Netherlands). Our results show that e-SOx enhanced sediment O2 consumption and acidified subsurface sediment, resulting in the dissolution of calcium carbonate and iron sulfide minerals in deeper sediment horizons and the associated accumulation of dissolved iron, manganese, and calcium in porewater. Remobilized Fe diffusing upward was reoxidized at the sediment-water interface, producing an amorphous Fe oxide crust, while dissolved Fe diffusing downward was reprecipitated in the form of FeS as it encountered the free sulfide horizon. The development of e-SOx enhanced the diffusive release of dissolved Mn at the sediment-water interface, capped the phosphate efflux, generated a buildup of organic matter in surface sediments, and strongly stimulated the release of alkalinity from the sediment. About 75% of this alkalinity production was associated with net CaCO3 dissolution, while the remaining 25% was attributed to a pumping mechanism that transfers alkalinity from anodic H2S oxidation (an alkalinity sink) in deeper sediments to cathodic O2 reduction (an alkalinity source) near the sediment-water interface. The resulting sediment alkalinity

  20. Application of Remote Sensing to Assess the Impact of Short Term Climate Variability on Coastal Sedimentation

    NASA Technical Reports Server (NTRS)

    Menzel, W. Paul; Huh, Oscar K.; Walker, Nan

    2004-01-01

    The purpose of this joint University of Wisconsin (UW) and Louisiana State University (LSU) project has been to relate short term climate variation to response in the coastal zone of Louisiana in an attempt to better understand how the coastal zone is shaped by climate variation. Climate variation in this case largely refers to variation in surface wind conditions that affect wave action and water currents in the coastal zone. The primary region of focus was the Atchafalaya Bay and surrounding bays in the central coastal region of Louisiana. Suspended solids in the water column show response to wind systems both in quantity (through resuspension) and in the pattern of dispersement or transport. Wind systems associated with cold fronts are influenced by short term climate variation. Wind energy was used as the primary signature of climate variation in this study because winds are a significant influence on sediment transport in the micro-tidal Gilf of Mexico coastal zone. Using case studies, the project has been able to investigate the influence of short term climate variation on sediment transport. Wind energy data, collected daily for National Weather Service (NWS) stations at Lake Charles and New Orleans, LA, were used as an indicator of short term climate variation influence on seasonal time scales. A goal was to relate wind energy to coastal impact through sediment transport. This goal was partially accomplished by combining remote sensing and wind energy data. Daily high resolution remote sensing observations are needed to monitor the complex coastal zone environment, where winds, tides, and water level all interact to influence sediment transport. The NASA Earth Observing System (EOS) era brings hope for documenting and revealing response of the complex coastal transport mosaic through regular high spatial resolution observations from the Moderate resolution Imaging Spectrometer (MODIS) instrument. MODIS observations were sampled in this project for

  1. The role of "pump action" in coastal and estuarine sediment resuspension

    NASA Astrophysics Data System (ADS)

    Jia, Y.; Zhang, S.

    2014-12-01

    Most of the sediment into sea carried by rivers deposited near the estuary,forming the subaqueous delta. However,previous researches has shown that sediment into sea carried by many rivers all over the world always forms a large scale of distribution along the estuarine coastal areas that thousands of kilometers away from the estuary. Resuspension of estuarine and coastal sediment plays an important role in the sediment long distance transport into sea. At present, it is widely recognized that sediment resuspension is caused by the wave and current scouring action on the surface of the seabed. This paper explored the process and mechanism of seabed sediment resuspension through flume simulation experiments; developed a conclusion that sediment resuspension is not only from the seabed surface, there is still a considerable part of sediments coming from the internal seabed through seepage "pump action";The proportion of the latter part in sediment resuspension is related to wave height, this experiment concluded that 5、10、15cm wave heights respectively accounted for 30.5%,43.8%,47.9%;The "pump action" is induced by the accumulation of excess pore water pressure inside the soil bed under the action of wave loading.

  2. Studies of the DOM aqueous extracts from coastal marine sediments

    NASA Astrophysics Data System (ADS)

    Sakellariadou, F.

    2012-04-01

    Dissolved organic matter (DOM) represents a major exchangeable organic pool playing an outstanding role in the ocean carbon cycle. It has a complex chemical structure made up of a wide range of organic molecules. The composition of DOM depends on the sources proximity and the exposure to any sort of degradation mechanism. The coloured (or chromophoric) dissolved organic matter (CDOM), representing the optically active fraction of DOM, consists of aromatic rings able to absorb light in the visible and UV regions (Kirk, 1994) and fluorophoric molecules that emit light. The main fluorophoric moieties of CDOM are humic material with a blue fluorescence and protein material with an ultraviolet (UV) fluorescence (Mopper and Schultz, 1993). Dissolved organic matter interacts with pollutants either by enhancing their bioavailability or by influencing their transportation to the soluble phase. In addition, DOM affects the remineralisation of carbon and its preservation in marine sediments. Referring to its origin, it can be terrestrial, freshwater or marine one. Fluorescence spectroscopy is a technique widely applied for the identification and characterization of organic matter, being fast, simple, non-destructive and sensitive. In addition, the fluorescence analysis for the physico-chemical characterization of organic matter requires a small amount of aqueous sample at a low concentration, in comparison with the large sample volumes needed for conventional techniques. At the present study coastal sediment samples were collected from Messiniakos gulf in the south western Peloponnese in South Greece. Messiniakos gulf has a seabed dominated by very abrupt inclinations reaching depths of more than 1000m. All samples, according to their grain size, are classified as fine clayey silt. Dissolved organic matter was extracted under gentle extraction conditions (4 mM CaCl2 solution). The various classes of organic components present at the DOM aqueous extracts were characterised by

  3. Subseafloor basalts as fungal habitats

    NASA Astrophysics Data System (ADS)

    Ivarsson, M.

    2012-02-01

    The oceanic crust is believed to host the largest potential habitat for microbial life on Earth, yet, next to nothing is known about this deep, concealed biosphere. Here fossilised fungal colonies in subseafloor basalts are reported from three different seamounts in the Pacific Ocean. The fungal colonies consist of various characteristic structures interpreted as fungal hyphae, fruit bodies and spores. The fungal hyphae are well preserved with morphological characteristics such as hyphal walls, septa, thallic conidiogenesis, and hyphal tips with hyphal vesicles within. The fruit bodies consist of large (~50-200 μm in diameter) body-like structures with a defined outer membrane and an interior filled with calcite. The fruit bodies have at some stage been emptied of their contents of spores and filled by carbonate forming fluids. A few fruit bodies not filled by calcite and with spores still within support this interpretation. Spore-like structures (ranging from a few μm:s to ∼20 μm in diameter) are also observed outside of the fruit bodies and in some cases concentrated to openings in the membrane of the fruit bodies. The hyphae, fruit bodies and spores are all closely associated with a crust lining the vein walls that probably represent a mineralized biofilm. The results support a fungal presence in deep subseafloor basalts and indicate that such habitats were vital between ∼81 and 48 Ma, and probably still is. It is suggested that near future ocean drilling programs prioritize sampling of live species to better understand this concealed biosphere.

  4. Subseafloor basalts as fungal habitats

    NASA Astrophysics Data System (ADS)

    Ivarsson, M.

    2012-09-01

    The oceanic crust is believed to host the largest potential habitat for microbial life on Earth, yet, still we lack substantial information about the abundance, diversity, and consequence of its biosphere. The last two decades have involved major research accomplishments within this field and a change in view of the ocean crust and its potential to harbour life. Here fossilised fungal colonies in subseafloor basalts are reported from three different seamounts in the Pacific Ocean. The fungal colonies consist of various characteristic structures interpreted as fungal hyphae, fruit bodies and spores. The fungal hyphae are well preserved with morphological characteristics such as hyphal walls, septa, thallic conidiogenesis, and hyphal tips with hyphal vesicles within. The fruit bodies consist of large (∼50-200 µm in diameter) body-like structures with a defined outer membrane and an interior filled with calcite. The fruit bodies have at some stage been emptied of their contents of spores and filled by carbonate-forming fluids. A few fruit bodies not filled by calcite and with spores still within support this interpretation. Spore-like structures (ranging from a few µm to ∼20 µm in diameter) are also observed outside of the fruit bodies and in some cases concentrated to openings in the membrane of the fruit bodies. The hyphae, fruit bodies and spores are all closely associated with a crust lining the vein walls that probably represent a mineralized biofilm. The results support a fungal presence in deep subseafloor basalts and indicate that such habitats were vital between ∼81 and 48 Ma.

  5. Identification of the resting cyst of Cochlodinium polykrikoides Margalef (Dinophyceae, Gymnodiniales) in Korean coastal sediments.

    PubMed

    Li, Zhun; Han, Myung-Soo; Matsuoka, Kazumi; Kim, So-Young; Shin, Hyeon Ho

    2015-02-01

    This study provides the first morphological features of resting cysts of Cochlodinium polykrikoides collected from Korean coastal sediments. Evidence for the existence of resting cysts of C. polykrikoides is based on the morphological and molecular phylogenetic data of the germinated cells and a resting cyst. The morphology of the resting cysts differed from that reported previously in sediments and culture experiments. The distinct feature is that the cyst body was covered by the reticulate ornaments and spines. PMID:26986269

  6. Towards the development of a combined Norovirus and sediment transport model for coastal waters

    NASA Astrophysics Data System (ADS)

    Barry, K.; O'Kane, J. P. J.

    2009-04-01

    Sewage effluent in coastal waters used for oyster culture poses a risk to human health. The primary pathogen in outbreaks of gastroenteritis following consumption of raw oysters is the Norovirus or "winter vomiting bug". The Norovirus is a highly infectious RNA virus of the Caliciviridae taxonomic family. It has a long survival time in coastal waters (T90 = 30 days in winter). Oysters selectively concentrate Norovirus in their digestive ducts. The virus cannot be removed by conventional depuration. The primary goal of the research is to quantify the risk of Norovirus infection in coastal waters through physically-based high-resolution numerical modelling. Cork Harbour and Clew Bay in Ireland provide case studies for the research. The models simulate a number of complex physical, chemical and biological processes which influence the transport and decay of the virus as well as its bioaccumulation in oyster tissue. The current phase of the research is concerned with the adsorption of the virus to suspended sediment in the water column. Adsorbed viruses may be taken out of the water column when sedimentation occurs and, subsequently, be added to it with resuspension of the bed sediment. Preliminary simulations of the Norovirus-sediment model indicate that suspended sediment can influence the transport of the virus in coastal waters when a high sediment-water partitioning coefficient is used and the model is run under calm environmental conditions. In this instance a certain fraction of the adsorbed viruses are taken out of the water column by sedimentation and end up locked in the bed sediment. Subsequently, under storm conditions, a large number of viruses in the bed are released into the water column by erosion of the bed and a risk of contamination occurs at a time different to when the viruses were initially released into the body of water.

  7. Characterization and evolution of the sediments of a Mediterranean coastal lagoon located next to a former mining area.

    PubMed

    García, Gregorio; Muñoz-Vera, Ana

    2015-11-15

    Coastal lagoons are ecosystems that are relatively enclosed water bodies under the influence of both the terrestrial and the marine environment, being vulnerable to human impacts. Human activities, such as mining extraction, are significant anthropogenic coastal stressors that can negatively affect ecosystems and communities. In light of the above, the objective of this research is to examine the influence of metal mining activities on the composition of sediments of a Mediterranean coastal lagoon, named Mar Menor. This paper presents a comprehensive characterization for grain size, mineralogy, geochemistry and organic matter of sediments of this coastal lagoon, investigating their variation along space and time. Sedimentation dynamics are ruling clearly the grain size predominant in each area of the Mar Menor coastal lagoon, determining the existence of entrainment, transport and sedimentation areas. For minerals, elements and organic matter, sedimentation dynamics are also determining their distribution. PMID:26371846

  8. Are coastal North Sea sediments an efficient filter for anthropogenic nitrogen?

    NASA Astrophysics Data System (ADS)

    Dähnke, Kirstin; Deek, Astrid; Neumann, Andreas; Newham, Michael; Emeis, Kay

    2013-04-01

    Coastal oceans like the North Sea and German Bight nowadays receive very high amounts of surplus nitrogen from anthropogenic sources such as rivers or atmospheric deposition. The subsequent removal of these excess nutrient loads hence is a critical feature of coastal and marine sediments, with the strong potential to alleviate negative eutrophication phenomena. However, massive dredging of riverine and estuarine sediments and a long history of diverse anthropogenic pressures can potentially alter this natural filter function of marine/coastal sediments, and we accordingly aimed to quantify denitrification along a gradient from the Elbe River estuary to the German Bight and North Sea. In a joint approach, we measured natural and potential denitrification rates along a gradient from the Elbe estuary to the Wadden Sea and further off-shore sediments. We used both in situ and incubation techniques, aiming to quantify natural and potential rates of denitrification. Based on our data, we also tried to unravel the influence of different factors that limit denitrification. A statistical data analysis suggests that TOC and water column nitrate are main controlling factors, with surprisingly little influence of oxygen penetration depth. We find that bulk N2 production is largely fuelled by coupled nitrification-denitrification, with an equivalent of 19-43% of the Elbe River nitrate load being removed via this process in spring and summer. In contrast, the direct removal of nitrate from the water column is of subordinate role. Overall, our results show that the sedimentary filter function is only able to remove small portions of anthropogenic nitrogen entrained to the coastal North Sea along the coastal strip. An extrapolation of rates to different natural sediment types and their respective areas suggests that ~ 2-3 kt, representing 5% of the spring/summer nitrate load of the Elbe River, are removed in the near-shore region. This accordingly leaves a vast amount of surplus

  9. Impact of humans on the flux of terrestrial sediment to the global coastal ocean.

    PubMed

    Syvitski, James P M; Vörösmarty, Charles J; Kettner, Albert J; Green, Pamela

    2005-04-15

    Here we provide global estimates of the seasonal flux of sediment, on a river-by-river basis, under modern and prehuman conditions. Humans have simultaneously increased the sediment transport by global rivers through soil erosion (by 2.3 +/- 0.6 billion metric tons per year), yet reduced the flux of sediment reaching the world's coasts (by 1.4 +/- 0.3 billion metric tons per year) because of retention within reservoirs. Over 100 billion metric tons of sediment and 1 to 3 billion metric tons of carbon are now sequestered in reservoirs constructed largely within the past 50 years. African and Asian rivers carry a greatly reduced sediment load; Indonesian rivers deliver much more sediment to coastal areas. PMID:15831750

  10. Diploptene: an indicator of terrigenous organic carbon in Washington coastal sediments

    NASA Technical Reports Server (NTRS)

    Prahl, F. G.; Hayes, J. M.

    1992-01-01

    The pentacyclic triterpene 17 beta(H),21 beta(H)-hop-22(29)-ene (diploptene) occurs in sediments throughout the Columbia River drainage basin and off the southern coast of Washington state in concentrations comparable to long-chain plantwax n-alkanes. The same relationship is evident for diploptene and long-chain n-alkanes in soils from the Willamette Valley. Microorganisms indigenous to soils and soil erosion are indicated as the biological source and physical process, respectively, for diploptene in coastal sediments. Similarity between the stable carbon isotopic composition (delta 13CPDB) of diploptene isolated from soil in the Willamette Valley (-31.2 +/- 0.3%) and from sediments deposited throughout the Washington coastal environment (-31.2 +/- 0.5%) supports this argument. Values of delta for diploptene in river sediments are variable and 8-17% lighter, indicating that an additional biological source such as methane-oxidizing bacteria makes a significant contribution to the diploptene record in river sediments. Selective biodegradation resulting from a difference in the physicochemical association within eroded particles can explain the absence of the more-13C-depleted form of diploptene in Washington coastal sediments, but this mechanism remains unproven.

  11. Spatial variability and the fate of cesium in coastal sediments near Fukushima, Japan

    NASA Astrophysics Data System (ADS)

    Black, E. E.; Buesseler, K. O.

    2014-09-01

    Quantifying the amount of cesium incorporated into marine sediments as a result of the Fukushima Dai-ichi Nuclear Power Plant (FDNPP) accident has proven challenging due to the limited multi-core sampling from within the 30 km zone around the facility; the inherent spatial heterogeneities in ocean sediments; and the potential for inventory fluctuations due to physical, biological, and chemical processes. Using 210Pb, 234Th, 137Cs, and 134Cs profiles from 20 sediment cores, coastal sediment inventories were reevaluated. A 137Cs sediment inventory of 100 ± 50 TBq was found for an area of 55 000 km2 using cores from this study and a total of 130 ± 60 TBq using an additional 181 samples. These inventories represent less than 1% of the estimated 15-30 PBq of cesium released during the FDNPP disaster. The time needed for surface sediment activities (0 to 3 cm) at the 20 locations to be reduced by 50% via sediment mixing was estimated to range from 0.4 to 26 yr. Due to the observed variability in mixing rates, grain size, and inventories, additional cores are needed to improve these estimates and capture the full extent of cesium penetration into the shallow coastal sediments, which was deeper than 14 cm for all cores retrieved from water depths less than 150 m.

  12. Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments.

    PubMed

    Laverock, Bonnie; Smith, Cindy J; Tait, Karen; Osborn, A Mark; Widdicombe, Steve; Gilbert, Jack A

    2010-12-01

    Bioturbation is a key process in coastal sediments, influencing microbially driven cycling of nutrients as well as the physical characteristics of the sediment. However, little is known about the distribution, diversity and function of the microbial communities that inhabit the burrows of infaunal macroorganisms. In this study, terminal-restriction fragment length polymorphism analysis was used to investigate variation in the structure of bacterial communities in sediment bioturbated by the burrowing shrimp Upogebia deltaura or Callianassa subterranea. Analyses of 229 sediment samples revealed significant differences between bacterial communities inhabiting shrimp burrows and those inhabiting ambient surface and subsurface sediments. Bacterial communities in burrows from both shrimp species were more similar to those in surface-ambient than subsurface-ambient sediment (R=0.258, P<0.001). The presence of shrimp was also associated with changes in bacterial community structure in surrounding surface sediment, when compared with sediments uninhabited by shrimp. Bacterial community structure varied with burrow depth, and also between individual burrows, suggesting that the shrimp's burrow construction, irrigation and maintenance behaviour affect the distribution of bacteria within shrimp burrows. Subsequent sequence analysis of bacterial 16S rRNA genes from surface sediments revealed differences in the relative abundance of bacterial taxa between shrimp-inhabited and uninhabited sediments; shrimp-inhabited sediment contained a higher proportion of proteobacterial sequences, including in particular a twofold increase in Gammaproteobacteria. Chao1 and ACE diversity estimates showed that taxon richness within surface bacterial communities in shrimp-inhabited sediment was at least threefold higher than that in uninhabited sediment. This study shows that bioturbation can result in significant structural and compositional changes in sediment bacterial communities, increasing

  13. Application of Remote Sensing to Assess the Impact of Short Term Climate Variability on Coastal Sedimentation

    NASA Technical Reports Server (NTRS)

    Moeller, Christopher C.; Gunshor, Mathew M.; Menzel, W. Paul; Huh, Oscar K.; Walker, Nan D.; Rouse, Lawrence J.; Frey, Herbert V. (Technical Monitor)

    2001-01-01

    The University of Wisconsin and Louisiana State University have teamed to study the forcing of winter season cold frontal wind systems on sediment distribution patterns and geomorphology in the Louisiana coastal zone. Wind systems associated with cold fronts have been shown to modify coastal circulation and resuspend sediments along the microtidal Louisiana coast. The assessment includes quantifying the influence of cumulative winter season atmospheric forcing (through surface wind observations) from year to year in response to short term climate variability, such as El Nino events. A correlation between winter cyclone frequency and the strength of El Nino events has been suggested. The atmospheric forcing data are being correlated to geomorphic measurements along western Louisiana's prograding muddy coast. Remote sensing data is being used to map and track sediment distribution patterns for various wind conditions. Transferring a suspended sediment concentration (SSC) algorithm to EOS MODIS observations will enable estimates of SSC in case 2 waters over the global domain. Progress in Year 1 of this study has included data collection and analysis of wind observations for atmospheric forcing characterization, a field activity (TX-2001) to collect in situ water samples with co-incident remote sensing measurements from the NASA ER-2 based MODIS Airborne Simulator (MAS) and the EOS Terra based MODerate resolution Imaging Spectroradiometer (MODIS) instruments, aerial photography and of sediment burial pipe field measurements along the prograding muddy Chenier Plain coast of western Louisiana for documenting coastal change in that dynamic region, and routine collection of MODIS 250 in resolution data for monitoring coastal sediment patterns. The data sets are being used in a process to transfer an SSC estimation algorithm to the MODIS platform. Work is underway on assessing coastal transport for the winter 2000-01 season. Water level data for use in a Geomorphic Impact

  14. Contaminated Coastal Sediments in the Northeastern United States: Changing Sources Over Time

    NASA Astrophysics Data System (ADS)

    Buchholtz ten Brink, M. R.; Bothner, M. H.; Mecray, E. L.

    2001-05-01

    Regional studies of coastal sediments in the northeastern United States, conducted by the U.S. Geological Survey, show that trace metal contamination from land-based activities has occurred near all major urban centers. Concentrations of metals, such as Cu, Pb, Zn, Hg, and Ag, are 2-5 times background levels in sediments of Boston Harbor, Long Island Sound (LIS), offshore of Gulf of Maine coastal cities, and in the New York Bight (NYB). Contaminant accumulations are strongly influenced by sediment lithology and sediment transport properties in local areas, in addition to proximity to pollutant sources. Inventories are greatest in muddy depo-centers of the NYB, western LIS, and Boston Harbor. Based on sediment cores, the onset of metal contamination in the northeast occurs in the mid-1800s, with inputs increasing in the mid-1900s and decreasing (20-50%) from the 1970s to present. The increases correlate with local population growth and abundance of a bacterial sewage indicator, Clostridium perfringens. Increases of N and Corg in cores also reflect population growth and changing wastewater treatment practices. Corg values reach a high of 6% in buried sediments near the NYB disposal sites. Cores from western LIS have increasing values of C, N, and P in the most recently deposited sediments, in contrast to metal concentrations that have decreased in recent years. Cessation of sludge disposal and reduction of chemical discharges have been effective at reducing inputs; however, contaminated sediment deposits remain in rivers (e.g., the Charles), floodplains (e.g., the Housatonic), and coastal sediments. In the future, high concentrations of metal contaminants stored in buried sediments of marine and fluvial systems are likely to be a lingering and significant source of pollution to coastal environments. Until more effective source-reduction occurs, land-use and industrial practices associated with population growth in the northeast will remain dominant factors for

  15. Effects of Emergent Vegetation on Sediment Dynamics within a Retreating Coastal Marshland

    NASA Astrophysics Data System (ADS)

    Stellern, C.; Grossman, E.; Fuller, R.; Wallin, D.; Linneman, S. R.

    2015-12-01

    Coastal emergent vegetation in estuaries physically interrupts flow within the water column, reduces wave energy and increases sediment deposition. Previous workers conclude that wave attenuation rates decrease exponentially with distance from the marsh edge and are dependent on site and species-specific plant characteristics (Yang et al., 2011). Sediment deposition may exhibit similar patterns; however, sediment, geomorphic and habitat models seldom integrate site-specific biophysical plant parameters into change analyses. We paired vegetation and sediment dynamic studies to: (1) characterize vegetation structure, (2) estimate sediment available for deposition, (3) estimate rate, distribution and composition of sediment deposits, (4) determine sediment accumulation on vegetation, (5) compare sediment deposition within dense tidal wetland relative to non-vegetated tidal flat. These studies integrate a variety of monitoring methods, including the use of sediment traps, turbidity sensors, side-on photographs of vegetation and remote sensing image analysis. We compared sedimentation data with vegetation characteristics and spatial distribution data to examine the relative role of vegetation morphologic traits (species, stem density, biomass, distribution, tidal channels, etc.) on sediment dynamics. Our study is focused on Port Susan Bay of Washington State; a protected delta that has experienced up to 1 kilometer of marsh retreat (loss) over the past fifty years. Preliminary results show that the highest winter deposition occurred in the high marsh/mid-marsh boundary, up to 300m inland of the marsh edge, where bulrush species are most dense. These results will inform restoration efforts aimed at reestablishing sediment supply to the retreating marshland. This research is necessary to understand the vulnerability and adaptability of coastal marshlands to climate change related stressors such as, increased water levels (sea-level rise) and wave energy.

  16. Physiological and evolutionary potential of microorganisms from the Canterbury Basin subseafloor, a metagenomic approach.

    PubMed

    Gaboyer, Frédéric; Burgaud, Gaëtan; Alain, Karine

    2015-05-01

    Subseafloor sediments represent a large reservoir of organic matter and are inhabited by microbial groups of the three domains of life. Besides impacting the planetary geochemical cycles, the subsurface biosphere remains poorly understood, notably questions related to possible metabolic pathways and selective advantages that may be deployed by buried microorganisms (sporulation, response to stress, dormancy). In order to better understand physiological potentials and possible lifestyles of subseafloor microbial communities, we analyzed two metagenomes from subseafloor sediments collected at 31 mbsf (meters below the sea floor) and 136 mbsf in the Canterbury Basin. Metagenomic phylogenetic and functional diversities were very similar. Phylogenetic diversity was mostly represented by Chloroflexi, Firmicutes and Proteobacteria for Bacteria and by Thaumarchaeota and Euryarchaeota for Archaea. Predicted anaerobic metabolisms encompassed fermentation, methanogenesis and utilization of fatty acids, aromatic and halogenated substrates. Potential processes that may confer selective advantages for subsurface microorganisms included sporulation, detoxication equipment or osmolyte accumulation. Annotation of genomic fragments described the metabolic versatility of Chloroflexi, Miscellaneous Crenarchaeotic Group and Euryarchaeota and showed frequent recombination events within subsurface taxa. This study confirmed that the subseafloor habitat is unique compared to other habitats at the (meta)-genomic level and described physiological potential of still uncultured groups. PMID:25873465

  17. Effects of Stormwater Pipe Size and Rainfall on Sediment and Nutrients Delivered to a Coastal Bayou

    EPA Science Inventory

    Pollutants discharged from stormwater pipes can cause water quality and ecosystem problems in coastal bayous. A study was conducted to characterize sediment and nutrients discharged by small and large (, 20 cm and .20 cm in internal diameters, respectively) pipes under different ...

  18. Sediment Quality in Near Coastal Waters of the Gulf of Mexico: Influence of Hurricane Katrina

    EPA Science Inventory

    The results from this study represent a synoptic analysis of sediment quality in coastal waters of Lake Pontchartrain and Mississippi Sound two months after the landfall of Hurricane Katrina. Post-hurricane conditions were compared to pre-hurricane (2000-2004) conditions, for se...

  19. Geostatistical Modeling of the Spatial Distribution of Sediment Oxygen Demand Within a Coastal Plain Blackwater Watershed

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Blackwater streams of the Georgia Coastal Plain are often listed as impaired due to chronically low DO levels. Previous research has shown that high sediment oxygen demand (SOD) values, a hypothesized cause of lowered DO within these waters, are significantly positively correlated with TOC within th...

  20. SEDIMENT CHEMICAL CONTAMINATION AND TOXICITY ASSOCIATED WITH A COASTAL GOLF COURSE COMPLEX.

    EPA Science Inventory

    The increasing density of golf courses represents a potential source of sediment contamination to nearby coastal areas, the chemical and biological magnitude of which is almost unknown. The objective of this study was to determine the concentrations of contaminants and toxicities...

  1. PERIPHYTON AND SEDIMENT BIOASSESSMENT AS INDICATORS OF THE EFFECT OF A COASTAL PULP MILL WASTEWATER

    EPA Science Inventory

    A two year study was conducted near Port St. Joe, Florida, in a coastal transportation canal and bay receiving combined municipal and pulp mill wastewater. The objective of the study was to determine the effectiveness of periphyton analysis techniques and sediment toxicity as ind...

  2. Integrated Assessment of Heavy Metal Contamination in Sediments from a Coastal Industrial Basin, NE China

    PubMed Central

    Li, Xiaoyu; Liu, Lijuan; Wang, Yugang; Luo, Geping; Chen, Xi; Yang, Xiaoliang; Gao, Bin; He, Xingyuan

    2012-01-01

    The purpose of this study is to investigate the current status of metal pollution of the sediments from urban-stream, estuary and Jinzhou Bay of the coastal industrial city, NE China. Forty surface sediment samples from river, estuary and bay and one sediment core from Jinzhou bay were collected and analyzed for heavy metal concentrations of Cu, Zn, Pb, Cd, Ni and Mn. The data reveals that there was a remarkable change in the contents of heavy metals among the sampling sediments, and all the mean values of heavy metal concentration were higher than the national guideline values of marine sediment quality of China (GB 18668-2002). This is one of the most polluted of the world’s impacted coastal systems. Both the correlation analyses and geostatistical analyses showed that Cu, Zn, Pb and Cd have a very similar spatial pattern and come from the industrial activities, and the concentration of Mn mainly caused by natural factors. The estuary is the most polluted area with extremely high potential ecological risk; however the contamination decreased with distance seaward of the river estuary. This study clearly highlights the urgent need to make great efforts to control the industrial emission and the exceptionally severe heavy metal pollution in the coastal area, and the immediate measures should be carried out to minimize the rate of contamination, and extent of future pollution problems. PMID:22768107

  3. Amino acid biogeo- and stereochemistry in coastal Chilean sediments

    NASA Astrophysics Data System (ADS)

    Lomstein, Bente Aa.; Jørgensen, Bo B.; Schubert, Carsten J.; Niggemann, Jutta

    2006-06-01

    The spatial distribution of total hydrolysable amino acids (THAA) and amino acid enantiomers ( D- and L-forms) was investigated in sediments underlying two contrasting Chilean upwelling regions: at ˜23 °S off Antofagasta and at ˜36 °S off Concepción. The contribution of amino acids to total organic carbon (%T AAC: 7-14%) and total nitrogen (%T AAN: 23-38%) in surface sediments decreased with increasing water depth (from 126 to 1350 m) indicating that organic matter becomes increasingly decomposed in surface sediments at greater water depth. Changes in the ratio between the protein amino acid aspartate and its non-protein degradation product β-alanine confirmed this observation. Furthermore, estimates of THAA mineralization showed that sedimentary amino acid reactivity decreased with both increasing water depth as well as progressive degradation status of the organic matter that was incorporated into the sediment. Reactivity of organic matter in the sediment was also assessed using the Degradation Index (DI) developed by [Dauwe, B., Middelburg, J.J., 1998. Amino acids and hexosamines as indicators of organic matter degradation state in North Sea sediments. Limnol. Oceanogr.43, pp. 782-798.]. Off Concepción, DI was successfully applied to examine the degradation status of sedimentary organic matter at different water depths. However, unexpected results were obtained at the Antofagasta stations as DI increased with sediment depth, suggesting more degraded organic matter at the surface than deeper in the cores. The contribution of peptidoglycan amino acids to THAA was estimated from the concentrations of D-aspartate, D-glutamic acid, D-serine, and D-alanine. Peptidoglycan amino acids accounted for >18% of THAA in all investigated samples. In surface sediments peptidoglycan amino acids accounted for a progressively larger fraction of THAA at increasing water depths (up to >26%). Further, the contribution of peptidoglycan amino acids to THAA increased with

  4. Mercury contamination in the estuaries and coastal sediments of the Strait of Malacca.

    PubMed

    Looi, Ley Juen; Aris, Ahmad Zaharin; Yusoff, Fatimah Md; Hashim, Zailina

    2015-01-01

    Sediment is a great indicator for assessing coastal mercury contamination. This work profiled the magnitude of mercury pollution in the tropical estuaries and coastal sediments of the Strait of Malacca. Mercury was extracted through the ultrasound-assisted mercury extraction method and analyzed using the flow injection mercury system. The mean concentration of mercury in the sediment samples was 61.43 ± 23.25 μg/kg, ranging from 16.55 ± 0.61 to 114.02 ± 1.54 μg/kg. Geoaccumulation index revealed that a total of 13% of sampling sites were moderately enriched with mercury. The northern part of the Strait of Malacca had the highest mean mercury (Hg) concentration (76.36 ± 27.25 μg/kg), followed by the southern (64.59 ± 16.09 μg/kg) and central (39.33 ± 12.91 μg/kg) parts. Sediment mercury concentration in the current study was lower than other regions like Japan, China, Indian, east Mediterranean, and Taiwan. When compared to the Canadian interim marine and freshwater sediment, China's soil interim environmental guidelines, mercury contamination in the Strait of Malacca was found to be below these permissible limits. Sediment organic matter content was found to have significant correlation with sediment mercury concentration. This study could provide the latest benchmark of mercury pollution and prove beneficial to future pollution studies in relation to monitoring works in tropical estuaries and coastal sediments. PMID:25380712

  5. Using radiosilver and plutonium isotopes to trace the dispersion of contaminated sediment in Fukushima coastal catchments

    NASA Astrophysics Data System (ADS)

    Evrard, O.; Ayrault, S.; Pointurier, F.; Onda, Y.; Laceby, J. P.; Lepage, H.; Chartin, C.; Cirella, M.; Pottin, A. C.; Hubert, A.; Lefèvre, I.

    2015-12-01

    The Fukushima Dai-ichi nuclear power plant (FDNPP) accident in March 2011 resulted in a 3000-km² radioactive pollution plume consisting predominantly of radiocesium (137Cs and 134Cs). This plume is drained by several rivers to the Pacific Ocean after flowing through less contaminated, but densely inhabited coastal plains. As the redistribution of radionuclide contaminated sediment could expose the local population to higher radiation rates, novel fingerprinting methods were developed to trace the downstream dispersion of contaminated sediment. First, the heterogeneous deposition of metastable silver-110 (110mAg) across these coastal catchments was used to investigate sediment migration. In particular, the 110mAg/137Cs activity ratio was measured in soils and river sediment demonstrating the occurrence of a seasonal cycle of soil erosion during typhoons and spring snowmelt in 2011 and 2012. However, due to the rapid decay of 110mAg (half-life of 250 days), alternative methods were required to continue tracking sediment from 2013 onwards. One promising method includes the analyses of plutonium isotopes to further understand sediment migration in the Fukushima region. For example, 241Pu/239Pu atom ratios measured in sediment collected in Fukushima coastal rivers shortly after the accident were shown to be significantly higher (0.0017 - 0.0884) than corresponding values attributed to the global fallout (0.00113 ± 0.00008). Additional analyses were conducted on sediment sampled in 2013 and 2014 after the start of decontamination works. These analyses show that the 241Pu/239Pu atom ratios decreased towards the global fallout values in rivers draining decontaminated paddy fields, demonstrating the effectiveness of remediation works.

  6. Relative role of eukaryotic and prokaryotic microorganisms in phenanthrene transformation in coastal sediments

    SciTech Connect

    MacGillivray, A.R.; Shiaris, M.P. )

    1994-04-01

    The relative role of eukaryotic versus prokaryotic microorganisms in phenanthrene transformation was measured in slurries of coastal sediment by two different approaches: detection of marker metabolites and use of selective inhibitors on phenanthrene biotransformation. Phenanthrene biotransformation was measured by polar metabolite formation and CO[sub 2] evolution from [9-[sup 14]C]phenanthrene. Both yeasts and bacteria transformed phenanthrene in slurries of coastal sediment. Two products of phenanthrene oxidation by fungi, phenanthrene trans-3,4-dihydrodiol and 3-phenanthrol, were produced in yeast-inoculated sterile sediment. However, only products of phenanthrene oxidation typical of bacterial transformation, 1-hydroxy-2-naphthoic acid and phenanthrene cis-3,4-dihydrodiol, were isolated from slurries of coastal sediment with natural microbial populations. Phenanthrene trans-dihydrodiols or other products of fungal oxidation of phenanthrene were not detected in the slurry containing a natural microbial population. A predominant role for bacterial transformation of phenanthrene was also suggested from selective inhibitor experiments. Addition of streptomycin to slurries, at a concentration which suppressed bacterial viable counts and rates of [methyl-[sup 3]H]thymidine uptake, completely inhibited phenanthrene transformation. Treatment with colchicine, at a concentration which suppressed yeast viable counts, depressed phenanthrene transformation by 40%, and this was likely due to nontarget inhibition of bacterial activity. The relative contribution of eukaryotic microorganisms to phenanthrene transformation in inoculated sterile sediment was estimated to be less than 3% of the total activity. We conclude that the predominant degraders of phenanthrene in muddy coastal sediments are bacteria and not eukaryotic microorganisms. 35 refs., 2 figs., 1 tab.

  7. Sediment budget variation at watershed scale due to anthropogenic pressures, and its relationship to coastal erosion

    NASA Astrophysics Data System (ADS)

    Aiello, Antonello; Adamo, Maria; Canora, Filomena

    2014-05-01

    The transfer of sediments from hydrographic basins towards the coast is a significant pathway of material transfer on Earth. In sedimentary environment, the main portion of sediment that enters the coastal areas is derived originally from erosion in the coastal watersheds. Extensive anthropogenic pressures carried out within coastal basins have long shown negative impacts on littoral environments. In fluvial systems, sediments trapped behind dams and in-stream gravel mining cause the reduction in sediment supply to the coast. Along the Jonian littoral of the Basilicata Region (southern Italy), natural coastal processes have been severely disrupted since the second half of the 20th century as a result of riverbed sand and gravel mining and dam construction, when economic advantages were measured in terms of the development of infrastructure, water storage, and hydropower production for the agricultural, industrial and socio-economic development of the area. Particularly, the large numbers of dams and impoundments that have been built in the hydrographic basins have led a signi?cant reduction on river sediment loads. As a result, the Jonian littoral is experiencing a catalysed erosion phenomenon. In order to increase understanding of the morpho-dynamics of the Jonian littoral environment and more fully appreciate the amount of coastal erosion, an evaluation of the sediment budget change due to dam construction within the hydrographic basins of the Basilicata Region needs to be explored. Since quantitative data on decadal trends in river sediment supply before and after dam construction are lacking, as well as updated dam silting values, river basin assessment of the spatial patterns and estimated amount of sediment erosion and deposition are important in evaluating changes in the sediment budget. As coastal areas are being affected by an increasing number of population and socio-economic activities, the amount of sediment deficit at the littoral can permit to

  8. Coastal circulation and sediment dynamics in Hanalei Bay, Kaua'i, Hawaii: Part II: tracking recent fluvial sedimentation; isotope stratigraphy obtained in Summer 2005

    USGS Publications Warehouse

    Draut, Amy E.; Field, Michael E.; Bothner, Michael H.; Logan, Joshua B.; Casso, Michael A.; Baldwin, Sandra M.; Storlazzi, Curt D.

    2006-01-01

    Delivery and dispersal of fluvial sediment in Hanalei Bay, Kaua’i, Hawaii, have important implications for the health of local coral reefs. The reef community in Hanalei Bay represents a relatively healthy ecosystem. However, the reefs are periodically stressed by storm waves, and increases in sediment and dissolved substances from the Hanalei River have the potential to cause additional stress. Increased turbidity and sedimentation on corals during Hanalei River floods that occur in seasons of low wave energy, when sediment would not be readily remobilized and advected out of the bay, could affect the health and sustainability of coral reefs and the many associated species. Measurements of short-lived isotopes 7Be and 137Cs in sediment cores have been used to trace the thickness and distribution of terrestrial sediment in Hanalei Bay, in order to assess spatial and temporal patterns of sediment deposition and remobilization relative to coral-reef locations. A third isotope, 210Pb, derived primarily from seawater, provides additional information about recent sedimentary history. Isotope profiles and observations of sedimentary facies from cores collected at multiple locations in June 2005, and again in August 2005, indicate the presence of recent fluvial sediment and organic debris in the east part of the bay near the mouth of the Hanalei River. Away from the immediate vicinity of the river mouth, sediment in the uppermost 1 m below the sea floor had not retained a significant quantity of fluvial sediment within the eight months prior to either sampling effort. During the study interval in summer 2005 the Hanalei River had no major floods and there was relatively little sediment input to the bay. Sediment away from the river mouth was dominated by carbonate sand, although some terrestrial sediment was present in sub-sea-floor horizons. Sedimentary facies and isotope inventories throughout the bay showed substantial spatial heterogeneity. Sediment cores will be

  9. Sediment distribution and coastal processes in Cook Inlet, Alaska

    NASA Technical Reports Server (NTRS)

    Anderson, D. M.; Gatto, L. W.; Mckim, H. L.; Petrone, A.

    1973-01-01

    Regional hydrologic and oceanographic relationships in Cook Inlet, Alaska have been recognized from sequential ERTS-1 MSS imagery. Current patterns are visible in the inlet because of differential concentrations of suspended sediment. The circulation patterns within Cook Inlet are controlled primarily by the interaction between the semi-diurnal tides and the counter clockwise Alaska current. In general, heavily sediment laden water is seen to be confined to portions of the inlet north of the Forelands and west of Kalgin Island. Tongues of clear oceanic water are observed to enter the inlet through Kennedy Channel along the east shoreline in the vicinity of Cape Elizabeth. A recurring counterclockwise circulation pattern observed around Kalgin Island seems to result from the interplay of the northerly moving water along the east shore and the southerly moving, sediment laden, water along the west side of the inlet. Prominent, fresh water plumes, heavily laden with sediment are visible at the mouths of all major rivers. Relect plumes from as many as three tidal stages have been recognized.

  10. Metabolic Potential of the Deep Subseafloor at Selected Convergent Margins

    NASA Astrophysics Data System (ADS)

    Cardace, D.; Amend, J. P.; Morris, J. D.

    2005-12-01

    The cold subseafloor is an extreme environment in which microbial metabolism appears to operate slowly but persistently over space and time. At convergent margins, subseafloor microbial communities experience diffuse flow of aqueous fluids through sediment interstices and variable flow of deeply sourced, advecting fluids. When these fluids mix, geochemical disequilibria are established, and may serve as energy sources in microbial metabolism. This study contrasts the metabolic potential of four near trench sedimentary environments associated with the Costa Rica, Cascadia, Nankai, and Izu-Bonin-Marianas subduction zones, which span much of the global range of water depths (~ 2500 to ~ 5800 m) and thermal structure (heat flow at seafloor ~ 15 to ~ 140 mW/m2) outboard of subduction zones. Geochemical data (pH, NH4+, Na+, K+, Fe2+, Ca2+, Mg2+, HCO3-, Cl-, SO42-, SiO2 (aq), CH4 (aq), H2 (aq), PO43-, HS-, and CH3COO-) collected during Ocean Drilling Program Legs 146, 170, 185, 190, and 201 are used in Gibbs free energy minimization calculations to model the bioenergetic potential of key metabolic reactions. At the four sites, pH values are 7.3-8.2, alkalinity values are 1 to 24 mM, and sulfate values are 0 to 30 mM. Notable site-specific differences exist in NH4+ (ranging two orders of magnitude in concentration) and salinity (with reported values up to 40 psu at Izu). The specific reactions considered are: (1) CO2 driven methanogenesis, (2) acetate driven methanogenesis, (3) methanotrophy coupled to sulfate reduction, (4) acetate oxidation coupled to sulfate reduction, (5) acetate oxidation coupled with nitrate reduction, (6) acetate oxidation coupled with ferric iron reduction. The standard Gibbs free energies are combined with the in situ geochemical parameters to calculate overall Gibbs free energies in deep subseafloor environments. In all cases, ferric iron reduction coupled with acetate oxidation yields the greatest energy (~-1600 kJ/mol), followed by nitrate

  11. Linking the historic 2011 Mississippi River flood to coastal wetland sedimentation

    USGS Publications Warehouse

    Falcini, Federico; Khan, Nicole S.; Macelloni, Leonardo; Horton, Benjamin P.; Lutken, Carol B.; McKee, Karen L.; Santoleri, Rosalia; Colella, Simone; Li, Chunyan; Volpe, Gianluca; D’Emidio, Marco; Salusti, Alessandro; Jerolmack, Douglas J.

    2012-01-01

    Wetlands in the Mississippi River deltaic plain are deteriorating in part because levees and control structures starve them of sediment. In Spring of 2011 a record-breaking flood brought discharge on the lower Mississippi River to dangerous levels, forcing managers to divert up to 3500 m3/s-1 of water to the Atchafalaya River Basin. Here we quantify differences between the Mississippi and Atchafalaya River inundation and sediment-plume patterns using field-calibrated satellite data, and assess the impact these outflows had on wetland sedimentation. We characterize hydrodynamics and suspended sediment patterns of the Mississippi River plume using in-situ data collected during the historic flood. We show that the focused, high-momentum jet from the leveed Mississippi delivered sediment far offshore. In contrast, the plume from the Atchafalaya was more diffuse; diverted water inundated a large area; and sediment was trapped within the coastal current. Maximum sedimentation (up to several centimetres) occurred in the Atchafalaya Basin despite the larger sediment load carried by the Mississippi. Minimum accumulation occurred along the shoreline between these river sources. Our findings provide a mechanistic link between river-mouth dynamics and wetland sedimentation patterns that is relevant for plans to restore deltaic wetlands using artificial diversions.

  12. Short- and long-term sediment transport in western Bohai Bay and coastal areas

    NASA Astrophysics Data System (ADS)

    Feng, Huan; Zhang, Weiguo; Jia, Li; Weinstein, Michael P.; Zhang, Qiufeng; Yuan, Dekui; Tao, Jianhua; Yu, Lizhong

    2010-05-01

    Sediment cores (˜40-100 cm) were collected at 12 locations in the western Bohai Bay, the Haihe River estuary, the Yongding River estuary and the Tianjin Harbor, China, during 24-26 July 2007, and analyzed for 7Be and 210Pb activities. Due to localized hydrodynamic patterns and frequent disturbance from dredging activities, steady-state sedimentation features were not observed in this study. As demonstrated in the 7Be and 210Pb profiles, the temporal and spatial variations of these radionuclides support a non-steady state depositional environment in the study area. By comparing 7Be and 210Pb inventories in the sediments with those of the atmospheric source, we found that: 1) sediments dredged from the Tianjin Harbor or eroded from nearby estuarine and coastal areas are retained in the western Bohai Bay for relatively short intervals (several months), as reflected in the relatively high 7Be inventories in the western Bohai Bay; 2) over the long-term (years to decades), 210Pb inventories in the sediments imply that there is a net on-shore transport of sediments, and the sediments are mass-balanced in the entire study area. Overall, our results suggest that the sediments are retained in the estuaries and the western Bohai Bay despite local variability in sediment dynamics and disturbance due to human activities.

  13. Design of a semi-autonomous boat for measurements of coastal sedimentation and erosion

    NASA Astrophysics Data System (ADS)

    Smith, D.; Cross, L.; Rivet, J.; Hall, S.

    2015-03-01

    Measurement of sediment deposition and erosion in coastal areas is a challenge due to soft shifting sediments, but is critical to assessing loss or restoration of coastal sediments and wetlands. The aim of this project was to design and construct a semi-autonomous boat with water depth measuring capabilities. It was intended to map the depth of coastal wetlands to determine erosion rates and assess coastal restoration effects. Depth-measuring equipment was incorporated into an autonomous pontoon boat powered by solar panels. The propulsion system consisted of two paddlewheels and two-way motors to allow movement and positioning for measurements. Modifications included a lightweight, hard coating on the pontoons and powder-coating the frame to extend their usable life. A microcontroller controlled the boat and captured depth data from sensors and location data with a GPS system. The depth measuring system consisted of a pulley and counter system that completed each measurement in less than 45 seconds. This allowed the boat to take approximately 400 measurements per day. Net accuracy was approximately 3 cm in the tested configuration. The boat can continually measure the depth of specified areas in the wetlands; with this data, the change in depth can be monitored to see the effects of restoration projects.

  14. Do physicochemical sediment variables and their soft sediment macrofauna differ among microsize coastal lagoons with forested and urbanised catchments?

    NASA Astrophysics Data System (ADS)

    Mikac, K. M.; Maher, W. A.; Jones, A. R.

    2007-03-01

    Microsize intermittently open and closed coastal lagoons are a common feature of the coast of southern New South Wales, in southeast Australia. Many of these lagoons are undergoing development and urbanisation of their catchments, leading to concern about their ecological health. Consequently, it was hypothesised that lagoons with urbanised catchments should hav e finer, more contaminated sediments and fewer macrofaunal taxa (represented by opportunistic taxa) than lagoons that have undeveloped, forested catchments. To test these hypotheses, five lagoons with catchments dominated by either native forest or urban development were compared with respect to their sediment composition (i.e. sediment grain size, trace metal concentrations, organic carbon and nutrients) and soft sediment macrofaunal assemblages in the Batemans Bay region of southeast Australia. Using a nested design without temporal replication, replicate core samples were taken from sampling stations nested within lagoons that were nested within catchment type. Univariate and multivariate statistical analyses were used to test for significant differences and dissimilarities between catchment types and among lagoons. Of all the abiotic and biotic variables measured, only total nitrogen showed a difference between the two catchment types. Thus providing support to refute the explanatory model that urbanisation had negatively affected the sedimentary environment and macrofaunal composition of these microsize coastal lagoons. In contrast, differences among lagoons were usually significant with differences between the two forested lagoons, North Head and Acheron lagoon, being particularly large for assemblage composition and the abundance of some taxa; this variation may, potentially, obscure any effects of urbanisation. In addition, the information collected in this study provides a basic understanding of the physicochemical and biological aspects of microsize coastal lagoons in southeast Australia. Such

  15. Mapping the in situ microscale distribution of microphytobenthic biomass in coastal sediments: a hyperspectral methodology

    NASA Astrophysics Data System (ADS)

    Chennu, A.; Volkenborn, N.; Janssen, F.; Polerecky, L.

    2012-04-01

    Microphytobenthic primary production is the fundament of the trophic food web in coastal marine sediments. The concentration of photopigments, which are a proxy for phototrophic biomass, in the surface sediment is considered as a basic environmental descriptor in benthic studies. The mechanisms that control the distribution of benthic microalgae are complex, ranging from physico-chemical drivers (e.g. tidal action, nutrient availability) to ecological drivers (e.g. grazing). Here we present a novel, field-deployable hyperspectral imaging system that allows non-invasive in situ mapping of the photosynthetic microalgal biomass distribution with a high spatial (<1mm) and temporal (minutes) resolution. Using this system, we found a remarkably heterogeneous and dynamic distribution of microalgae in surficial intertidal sediments. These distributions were tightly linked to sediment surface topography (e.g. ripples) and to the distribution and activity of benthic infauna. We hypothesize that this correlation is facilitated by the influence of these factors on the advective transport of porewater and the associated fluxes of dissolved nutrients across the sediment-water interface. We argue that the utility of the high-resolution hyperspectral imaging method overcomes the inadequate resolution of traditional methods based on sedimentary chlorophyll extraction, and significantly improves our understanding of the processes that control benthic productivity in coastal sediments.

  16. Sedimentation in the western Arabian Sea the role of coastal and open-ocean upwelling

    NASA Astrophysics Data System (ADS)

    Rixen, Tim; Haake, Birgit; Ittekkot, Venugopalan

    Monsoon-induced coastal and open-ocean upwelling explain 84% of the variations of the organic carbon fluxes measured in the deep western Arabian Sea. In this paper, sea-level measurements, satellite-derived wind speeds, sea surface temperatures, and nutrient profiles are used to discern the relative importance of these factors on fluxes measured during nine years of continuous sediment trap deployments. This exercise shows: (i) the increase in fluxes observed during the initial stages of the SW monsoons are caused by open-ocean upwelling, which develops faster than the coastal upwelling; (ii) coastal upwelling triggers diatom blooms from nutrients from subsurface water and sediment resuspension and, more importantly, by injecting resting stages of diatoms back into the euphotic zone; (iii) silica depletion resulting from diatom blooms in laterally advecting water masses leads to a replacement of diatoms by other nitrate-limited organisms; (iv) organic carbon fluxes to the deep Arabian Sea increase in response to an intensification of both coastal and open-ocean upwelling; weak coastal upwelling and strong open-ocean upwelling also increase organic carbon fluxes. The varying dominance of their influence is reflected in the timing and the composition of the peak fluxes; (v) the link between organic carbon flux and monsoon strength is non-linear probably due to changes in the surface currents and to vigorous turbulence in the surface water during strong SW monsoons. These processes could reduce the organic carbon flux in the western Arabian Sea by about 65%.

  17. Are styrene oligomers in coastal sediments of an industrial area aryl hydrocarbon-receptor agonists?

    PubMed

    Hong, Seongjin; Lee, Junghyun; Lee, Changkeun; Yoon, Seo Joon; Jeon, Seungyeon; Kwon, Bong-Oh; Lee, Jong-Hyeon; Giesy, John P; Khim, Jong Seong

    2016-06-01

    Effect-directed analysis (EDA) was performed to identify the major aryl hydrocarbon receptor (AhR) agonists in sediments collected from a highly industrialized area (Lake Shihwa, Korea). Great AhR-mediated potencies were found in fractions containing aromatic compounds with log Kow values of 5-8, and relatively great concentrations of styrene oligomers (SOs) and polycyclic aromatic hydrocarbons (PAHs) were detected in those fractions. Until now, there was little information on occurrences and toxic relative potencies (RePs) of SOs in coastal environments. In the present study; i) distributions and compositions, ii) AhR binding affinities, and iii) contributions of SOs to total AhR-mediated potencies were determined in coastal sediments. Elevated concentrations of 10 SOs were detected in sediments of inland creeks ranging from 61 to 740 ng g(-1) dry mass (dm), while lesser concentrations were found in inner (mean = 33 ng g(-1) dm) and outer regions (mean = 25 ng g(-1) dm) of the lake. Concentrations of PAHs in sediments were comparable to those of SOs. 2,4-diphenyl-1-butene (SD3) was the predominant SO analogue in sediments. SOs and PAHs were accumulated in sediments near sources, and could not be transported to remote regions due to their hydrophobicity. RePs of 3 SOs could be derived, which were 1000- to 10,000-fold less than that of one representative potent AhR active PAH, benzo[a]pyrene. Although concentrations of SOs in sediments were comparable to those of PAHs, the collective contribution of SOs to total AhR-mediated potencies were rather small (<1%), primarily due to their smaller RePs. Overall, the present study provides information on distributions and AhR binding affinities for SOs as baseline data for degradation products of polystyrene plastic in the coastal environment. PMID:27043777

  18. Numerical simulation of suspended sediment transport merging with satellite derived data in coastal waters

    NASA Astrophysics Data System (ADS)

    Yang, Xuefei; Mao, Zhihua; Huang, Haiqing; Wang, Tianyu; Liu, Dong

    2014-11-01

    The distribution and transport of suspended sediment in the coastal areas has attracted more and more attention. Monitoring and modeling of the distribution and transport of suspended sediment is significant. The mutual promotion of remote sensing and numerical simulation plays an important role on the coastal water quality study. In this study, a method of coupling derived suspended sediment concentration (SSC) images with numerical model, based on GOCI and COHERENS (COupled Hydrodynamical-Ecological model for REgioNal and Shelf seas) model, is proposed to monitor the suspended sediment dynamics in the East China Sea. The retrieved SSC were extracted from GOCI images, to set as initial condition and employed to calibrate the parameters and validation for the hydrodynamic modeling and sediment transport modeling, respectively. The model is forced by considering tidal surface elevation at open sea boundary, river discharges, surface stress as a function of wind speed, air temperature, relative humidity and cloud coverage, bottom roughness and heat flux through sea surface. The model results are in accord with the in situ measurements. The results show that: (1) Numerical model which initialized with satellite-derived SSC data can quickly response to the changes of sediment concentration in real sense. (2) Remote sensing is helpful to calibrate and validate the model for simulating the suspended sediment concentration distribution. (3)The proposed approach can obtain reasonable simulated results in the East China Sea. (4) It is of great significance to combine remote sensing and numerical simulation together to study the water quality in the coastal areas.

  19. Remote sensing of water clarity and suspended sediments in coastal waters

    USGS Publications Warehouse

    Stumpf, R.P.

    1992-01-01

    Processing of data for estimation of suspended sediment concentrations and water clarity in turbid coastal water requires three components: (1) correction of raw data to water reflectance; (2) establishment of appropriate general models relating reflectance characteristics to materials in the water; and (3) determination of the coefficients of the models appropriate for the area under study. This paper presents equations and procedures appropriate for this processing. It provides example coefficients and data for the NOAA advanced very high resolution radiometer, which is the most appropriate sensor for investigating larger estuaries and turbid coastal systems until the launch of an ocean color imager (SeaWiFS) in late 1993.

  20. Transcriptional analysis of sulfate reducing and chemolithoautotrophic sulfur oxidizing bacteria in the deep subseafloor.

    PubMed

    Orsi, William D; Barker Jørgensen, Bo; Biddle, Jennifer F

    2016-08-01

    Sulfate reducing bacteria (SRB) oxidize a significant proportion of subseafloor organic carbon, but their metabolic activities and subsistence mechanisms are poorly understood. Here, we report in depth phylogenetic and metabolic analyses of SRB transcripts in the Peru Margin subseafloor and interpret these results in the context of sulfate reduction activity in the sediment. Relative abundance of overall SRB gene transcripts declines strongly whereas relative abundance of ribosomal protein transcripts from sulfate reducing δ-Proteobacteria peak at 90 m below seafloor (mbsf) within a deep sulfate methane transition zone. This coincides with isotopically heavy δ(34) S values of pore water sulfate (70‰), indicating active subseafloor microbial sulfate reduction. Within the shallow sulfate reduction zone (0-5 mbsf), a transcript encoding the beta subunit of dissimilatory sulfite reductase (dsrB) was related to Desulfitobacterium dehalogenans and environmental sequences from Aarhus Bay (Denmark). At 159 mbsf we discovered a transcript encoding the reversely operating dissimilatory sulfite reductase α-subunit (rdsrA), with basal phylogenetic relation to the chemolithoautotrophic SUP05 Group II clade. A diversity of SRB transcripts involved in cellular maintenance point toward potential subsistence mechanisms under low-energy over long time periods, and provide a detailed new picture of SRB activities underlying sulfur cycling in the deep subseafloor. PMID:26991974

  1. Carbon and nitrogen assimilation activities of deep subseafloor microbes analyzed by NanoSIMS

    NASA Astrophysics Data System (ADS)

    Morono, Y.; Terada, T.; Inagaki, F.

    2009-12-01

    Deep subseafloor microbes play significant roles on biogeochemical cycles with extremely low metabolic activities. The subseafloor microbial community consists mainly of uncultured components; hence, their growth and metabolic characteristics remain almost completely unknown. Here, we presnet in vitro isotopic evidence that the deep subseafloor microbes actively incooporate multiple carbon and nitrogen compounds into their biomass using NanoSIMS. We incubated methane hydrate-bearing deep marine sediments with small 13C-labeled glucose, acetate, pyruvate, bicarbonate, amino-acids and methane in the presence of 15N-labeled ammonia as a nitrogen source for 2 and 6 monthes under the anaerobic condition. Using NanoSIMS, we observed the cells that incooprated 13C- or 15N-labeled substrates such as 13C-glucose, pyruvate, and 15N-ammonia up to 50% of their cellular carbon or nitrogen mass. Assimilation of 13C- and 15N-labeled amino acids as well as 13C-bicarbonates by autotrophs was also observed while 13C-methane was found to be difficult to be used for the carbon source, regardless of the presence of some additional electron acceptors for the energy respiration. These results indicate that the metabolic activities of deep subseafloor microbes can be stimulated in vitro by adding potential carbon and nitrogen sources, providing new insights into the biogeochemical functioning of the deep subseaflor microbes and its ecosystem.

  2. Measurements of the Balance of Subsidence and Sedimentation in the Coastal Zone of Bangladesh

    NASA Astrophysics Data System (ADS)

    Steckler, M. S.; Mondal, D. R.; Akhter, S. H.; Davis, J. L.; Goodbred, S. L., Jr.; Wilson, C.; Bulbul, M. A.

    2015-12-01

    In the face of rising sea levels, the balance of land subsidence, sea level rise and sedimentation is critical for low-lying deltaic regions. Deltas commonly experience subsidence due to compaction of their thick sediment accumulations and other processes. Many are susceptible to growth faulting and seaward collapse of the sediment pile on detachment layers (salt and/or shales) leading to even greater subsidence. We present evidence for moderate subsidence rates and continuing active sedimentation at the Ganges-Brahmaputra Delta in Bangladesh. Subsidence rates are based on continuous GPS, including three new coastal stations established in 2012, hourly tide gauge data for 1977-2012 at 16 sites, two historical sites with ages of 300 years (salt-making kilns) and 400 years (Hindu temple), and sedimentation accumulation rates of near-sea-level deposits from hand-drilled tube wells. Results so far suggest that most sites are subsiding at 3-4 mm/y, although some higher rates are recorded. Updated estimates for subsidence will be presented. Two sets of vertical optical strainmeters record sediment compaction and inform its variation with depth. Sedimentation estimates based on sedimentation plots, marker horizons, and surface elevation tables (SETs) suggest that accumulation rates in natural areas near the coast currently compensate for relative subsidence, whereas human-modified areas farther inland receive insufficient sediment and are at risk. We hypothesize that the moderate subsidence rate of the delta is due to buttressing of the margin by the continental rise. The slope-rise break is shallow at 1 km water depth due to the high sediment supply feeding the Bengal Fan. Thus the thick wedge of continental rise sediments rise higher than the top of the weak overpressured sediments in the delta that could act as a décollement surface. This prevents the seaward collapse of the delta and associated higher rates of subsidence.

  3. Monitoring Sediment Size Distributions in a Regulated Gravel-Bed Coastal Stream

    NASA Astrophysics Data System (ADS)

    O'Connor, M. D.; Lewis, J.; Andrew, G.

    2014-12-01

    Lagunitas Creek drains 282 km2 in coastal Marin County, California. The watershed contains water supply reservoirs, urban areas, parks and habitat for threatened species (e.g. coho salmon). Water quality is impaired by excess fine sediment, and a plan to improve water quality (i.e. TMDL) was adopted by State authorities in 2014. The TMDL asserts changes in sediment delivery, transport, and storage contributed to the decline of coho. A sediment source analysis found a 2x increase in sediment supply. Concentrations of sand and fine gravel in the channel are elevated and, during high flows, more mobile. The Federal Coho Salmon Recovery Plan (2012) describes sediment conditions affecting coho habitat as "fair". Reservoir managers were directed by the State in 1995 to reduce sedimentation and improve riparian vegetation and woody debris to improve fish habitat. Prior sediment monitoring found variability related primarily to intense winter runoff without identifying clear trends. A new sediment monitoring program was implemented in 2012 for ongoing quantification of sediment conditions. The goal of monitoring is to determine with specified statistical certainty changes in sediment conditions over time and variation among reaches throughout the watershed. Conditions were compared in 3 reaches of Lagunitas Cr. and 2 tributaries. In each of the 5 channel reaches, 4 shorter reaches were sampled in a systematic grid comprised of 30 cross-channel transects spaced at intervals of 1/2 bankfull width and 10 sample points per transect; n=1200 in 5 channel reaches. Sediment diameter class (one clast), sediment facies (a patch descriptor), and habitat type were observed at each point. Fine sediment depth was measured by probing the thickness of the deposit, providing a means to estimate total volume of fine sediment and a measure of rearing habitat occupied by fine sediment (e.g. V*). Sub-surface sediment samples were collected and analyzed for size distribution at two scales: a

  4. Magnetic mineral distribution in coastal marine sediments collected from off the southwestern Chile.

    NASA Astrophysics Data System (ADS)

    Kawamura, Noriko; Ishikawa, Naoto; Kurasawa, Atsushi

    2013-04-01

    In order to reveal magnetic mineral distributions in coastal marine sediments taken from off the southwestern Chile, we studied rock magnetic characteristics of surface sediments and performed chemical analysis in bottom water. The samples analyzed were unlithified terrigenous and calcareous sediments recovered by a multiple corer at five stations. Results show that rock magnetic parameters of sediments change with iron and oxygen concentrations in bottom water. Magnetite (Fe3O4) and goethite (αFeOOH) were common in the samples, whereas (titeno)maghemite (rFe2O3) and hematite (αFe2O3) were recognized at the oxic stations. Results also indicate a general change in mean grain size of magnetic minerals with iron and oxygen concentrations in bottom water. Fine grained magnetic minerals are distributed under anoxic condition. It is suggested that preferential dissolution of magnetic mineral grains occurred.

  5. Experimental study of cohesive sediment consolidation and resuspension identifies approaches for coastal restoration: Lake Lery, Louisiana

    NASA Astrophysics Data System (ADS)

    Lo, Edward L.; Bentley, Samuel J.; Xu, Kehui

    2014-12-01

    The purpose of this study was to evaluate related processes of sediment consolidation and resuspension in a coastal basin and how these processes influence retention of fine sediment delivered by a river diversion. Sediment samples were collected from Lake Lery, a coastal receiving basin of the Caernarvon Diversion from the Mississippi River, Louisiana. Consolidation was tested for six initial sediment concentrations (14.0-105 kg m-3) in a settling column over 15-day periods. Mud erodibility was tested at seven shear stress regimes (0.01-0.60 Pa) using a dual-core Gust erosion microcosm system, on cores containing suspensions that consolidated for 1, 2, and 4 weeks. Consolidation rates were found to be inversely and exponentially related to initial suspension concentration, over concentrations ranging from fluid mud (10-200 kg m-3) to hydraulic dredge effluent. Consolidation is best predicted by a function consisting of two exponential terms and one asymptotic constant, describing rates of rapid initial and slower subsequent settling. Coupled resuspension and consolidation tests (concentrations of 20-21 kg m-3) show that shear stresses generating the highest turbidity peaks increase from ≤0.30 Pa after 2 weeks of consolidation to ≥0.45 Pa after 4 weeks, and this strengthening cannot be attributed solely to increasing sediment concentration over time. Comparison of measured erosion shear stresses with bed shear stresses typical of coastal lakes and bays suggests that this degree of strengthening, if given time to occur, could increase the overall retention of fine sediments deposited on lake and bay floors.

  6. Analysis of Coastal Sediment Plume Dynamics in Puerto Rico using MODIS/Terra 250-m Imagery

    NASA Astrophysics Data System (ADS)

    Otis, D. B.; Muller-Karger, F. E.; Mendez-Lazaro, P.; McCarthy, M.; Chen, F. R.

    2014-12-01

    Anomalous events of suspended sediments can degrade water quality in nearshore ecosystems by reducing light penetration, inhibiting primary production, and delivering pollutants associated with the sediment particles. Coral reefs, for example, are subject to stress by anomalous sediment loads. The island of Puerto Rico has a diverse topography, with steep mountain slopes, episodic high-intensity rainfall events, and weathered soils that lead to episodes of high sediment volumes being delivered to the coastal zone by rivers. We developed a time series of turbidity observations based on Moderate Resolution Imaging Spectroradiometer (MODIS) imagery for use in the coastal areas of Puerto Rico. The product uses remote-sensing reflectance (Rrs) of Band 1 (645 nm) at a spatial resolution of 250 m. These estimates were compared to in-situ turbidity measurements collected in San Juan Bay. Sediment plumes from the major rivers of Puerto Rico were assessed quantitatively and compared with time-series of meteorological and other parameters, including precipitation, river discharge, and wind velocity. The spatial extent of plumes, the timing and duration of plume events, and their potential impact on coral reefs are examined. Results show that plume events are episodic and short-lived, but that they may affect coral reefs located several kilometers offshore.

  7. Comparison of sediment supply to San Francisco Bay from Coastal and Sierra Nevada watersheds

    NASA Astrophysics Data System (ADS)

    McKee, L. J.

    2012-12-01

    Quantifying suspended sediment loads is of paramount importance for managing the world's estuaries. To address this information need, a comprehensive analysis was completed for the San Francisco Bay system by combining a number of formerly disparate data sets. Suspended sediment and optical backscatter measurements near the head of the estuary were used to generate a continuous suspended sediment concentration record. In addition, periodic measurements of velocity and suspended sediment variation in the cross-section were used to validate the use of point samples collected on the edge of the channel for generating loads. Suspended sediment loads were determined by combining daily averaged suspended sediment concentrations with daily flow estimates adjusting for dispersive loads. Sediment loads from 482 small drainages around the Bay were determined using 235 station years of suspended sediment data covering 38 watershed locations, regression analysis, and simple modeling. Over 16 years, net annual load to the head of the estuary from its 154000 km2 watershed varied from 0.13-2.58 (mean = 0.89) million metric t, or 5.8 t/km2/yr. Small drainages in the nine-county Bay Area discharged between 0.089 and 4.35 (mean = 1.43) million metric t with an average yield of 175 metric t/km2/yr. Our results indicate that external loads to the Bay are dominated by the many hundreds of urbanized and tectonically active tributaries that drain just 8145 km2 adjacent to the Bay and that during only 5 years did sediment loads from the Central Valley likely exceed loads from the sum of the local smaller drainages. If San Francisco Bay is typical of other estuaries in active tectonic or climatically variable coastal regimes, managers responsible for water quality, sediment accumulating in shipping channels, or restoring wetlands in the world's estuaries may need to more carefully account for proximal small urban drainages that may dominate allochthonous sediment supply.

  8. Suspended sediment concentration and optical property observations of mixed-turbidity, coastal waters through multispectral ocean color inversion

    EPA Science Inventory

    Multispectral satellite ocean color data from high-turbidity areas of the coastal ocean contain information about the surface concentrations and optical properties of suspended sediments and colored dissolved organic matter (CDOM). Empirical and semi-analytical inversion algorit...

  9. Method 440.0 Determination of Carbon and Nitrogen in Sediments and Particulatesof Estuarine/Coastal Waters Using Elemental Analysis

    EPA Science Inventory

    Elemental analysis is used to determine particulate carbon (PC) and particulate nitrogen (PN) in estuarine and coastal waters and sediment. The method measures the total carbon and nitrogen irrespective of source (inorganic or organic).

  10. Assessment of metal contamination in coastal sediments, seawaters and bivalves of the Mediterranean Sea coast, Egypt.

    PubMed

    El-Sorogy, Abdelbaset S; Attiah, Abdullah

    2015-12-30

    In order to assess metal contamination on the Mediterranean coast of Egypt, 45 sediment samples, seawaters and bivalve specimens were collected from Rosetta coastal area for Mg, Al, K, Fe, Sr, Zn, Pb, Mn, As, Ce, Ni, Cr and Zr analyses by Inductively Coupled Plasma-Mass Spectrometer. The Enrichment Factor (EF), the Geoaccumulation Index (Igeo) and the Contamination Factor (CF) indicated that the coastal sediments of Rosetta area were severely enriched, strongly polluted with As, Pb and very highly contaminated with As, Pb, Ni, Ce, mostly as a result of anthropogenic inputs. Comparison with other samples from the Arabian Gulf, Red Sea and abroad coasts suggested that the studied samples have higher concentrations of Fe, Pb, As, Zn and Ni. The natural sources of heavy metals in the study area are attributed to weathering and decomposition of mountain ranges of the Sudan and Ethiopia, while the anthropogenic ones are the metals produced from industrial, sewage, irrigation and urban runoff. PMID:26563548

  11. Mercury Enrichment in Sediments of the Coastal Area of Northern Latium, Italy.

    PubMed

    Scanu, Sergio; Piazzolla, Daniele; Frattarelli, Francesco Manfredi; Mancini, Emanuele; Tiralongo, Francesco; Brundo, Maria Violetta; Tibullo, Daniele; Pecoraro, Roberta; Copat, Chiara; Ferrante, Margherita; Marcelli, Marco

    2016-05-01

    The purpose of this study was to evaluate the extent of the Hg geochemical anomaly arising in the Amiata and Tolfa complex to the coastal area of northern Latium and to examine the possible influence on this area by the Mignone River, and by the small coastal basins, which are characterized by both previous mining activities and decades of past industrial impact. The results confirm the extension of the anomaly of concentrations of Hg in the coastal area of northern Latium, with the northern sector influenced by the contributions of the Fiora and Mignone Rivers and the southern sector influenced by the contributions of minor basins. The results show high values of the Adverse Effect Index throughout the considered area and highlight the need for further investigation in order to assess the impact of human activities on the present and past values of Hg in marine sediments. PMID:26994618

  12. Corynebacterium marinum sp. nov. isolated from coastal sediment in Qingdao, China

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A taxonomic study was performed on strain D7015T, which was isolated from coastal sediment close to a coal-fired power station in Qingdao, China. D7015T comprised Gram-positive, non-motile diphtheroid rods, which grew in 0-10 % (w/v) NaCl and 4-37°C, with optimum growth at 1% (w/v) NaCl and 30-32°C...

  13. Assessing effects of changing land use practices on sediment loads in Panther Creek, north coastal California

    USGS Publications Warehouse

    Madej, MaryAnn; Bundros, Greg; Klein, Randy

    2011-01-01

    Revisions to the California Forest Practice Rules since 1974 were intended to increase protection of water quality in streams draining timber harvest areas. The effects of improved timber harvesting methods and road designs on sediment loading are assessed for the Panther Creek basin, a 15.4 km2 watershed in Humboldt County, north coastal California. We compute land use statistics, analyze suspended sediment discharge rating curves, and compare sediment yields in Panther Creek to a control (unlogged) stream, Little Lost Man Creek. From 1978 to 2008, 8.2 km2 (over half the watershed) was clearcut and other timber management activities (thinning, selection cuts, and so forth) affected an additional 5.9 km2. Since 1984, 40.7 km of streams in harvest units received riparian buffer strip protection. Between 2000 and 2009, 22 km of roads were upgraded and 9.7 km were decommissioned, reducing potential sediment production by an estimated 40,000 m3. Road density is currently 3.1 km/km2. Sediment rating curves from 2005 to 2010 indicate a decrease in suspended sediment concentrations when compared to the pre-1996 period, although Panther Creek still has a higher sediment yield on a per unit area basis than the control stream.

  14. Contrasting Landscape Influences on Sediment Supply and Stream Restoration Priorities in Northern Fennoscandia (Sweden and Finland) and Coastal British Columbia

    NASA Astrophysics Data System (ADS)

    Rosenfeld, Jordan; Hogan, Daniel; Palm, Daniel; Lundquist, Hans; Nilsson, Christer; Beechie, Timothy J.

    2011-01-01

    Sediment size and supply exert a dominant control on channel structure. We review the role of sediment supply in channel structure, and how regional differences in sediment supply and landuse affect stream restoration priorities. We show how stream restoration goals are best understood within a common fluvial geomorphology framework defined by sediment supply, storage, and transport. Landuse impacts in geologically young landscapes with high sediment yields (e.g., coastal British Columbia) typically result in loss of instream wood and accelerated sediment inputs from bank erosion, logging roads, hillslopes and gullies. In contrast, northern Sweden and Finland are landscapes with naturally low sediment yields caused by low relief, resistant bedrock, and abundant mainstem lakes that act as sediment traps. Landuse impacts involved extensive channel narrowing, removal of obstructions, and bank armouring with boulders to facilitate timber floating, thereby reducing sediment supply from bank erosion while increasing export through higher channel velocities. These contrasting landuse impacts have pushed stream channels in opposite directions (aggradation versus degradation) within a phase-space defined by sediment transport and supply. Restoration in coastal British Columbia has focused on reducing sediment supply (through bank and hillslope stabilization) and restoring wood inputs. In contrast, restoration in northern Fennoscandia (Sweden and Finland) has focused on channel widening and removal of bank-armouring boulders to increase sediment supply and retention. These contrasting restoration priorities illustrate the consequences of divergent regional landuse impacts on sediment supply, and the utility of planning restoration activities within a mechanistic sediment supply-transport framework.

  15. Acoustic measurement of sediment dynamics in the coastal zones using wireless sensor networks

    NASA Astrophysics Data System (ADS)

    Sudhakaran, A., II; Paramasivam, A.; Seshachalam, S.; A, C.

    2014-12-01

    Analyzing of the impact of constructive or low energy waves and deconstructive or high energy waves in the ocean are very much significant since they deform the geometry of seashore. The deformation may lead to productive result and also to the end of deteriorate damage. Constructive waves results deposition of sediment which widens the beach where as deconstructive waves results erosion which narrows the beach. Validation of historic sediment transportation and prediction of the direction of movement of seashore is essential to prevent unrecoverable damages by incorporating precautionary measurements to identify the factors that influence sediment transportation if feasible. The objective of this study is to propose a more reliable and energy efficient Information and communication system to model the Coastal Sediment Dynamics. Various factors influencing the sediment drift at a particular region is identified. Consequence of source depth and frequency dependencies of spread pattern in the presence of sediments is modeled. Property of source depth and frequency on sensitivity to values of model parameters are determined. Fundamental physical reasons for these sediment interaction effects are given. Shallow to deep water and internal and external wave model of ocean is obtained intended to get acoustic data assimilation (ADA). Signal processing algorithms are used over the observed data to form a full field acoustic propagation model and construct sound speed profile (SSP). The inversions of data due to uncertainties at various depths are compared. The impact of sediment drift over acoustic data is identified. An energy efficient multipath routing scheme Wireless sensor networks (WSN) is deployed for the well-organized communication of data. The WSN is designed considering increased life time, decreased power consumption, free of threats and attacks. The practical data obtained from the efficient system to model the ocean sediment dynamics are evaluated with remote

  16. Recent rates of sedimentation on irregularly flooded Boreal Baltic coastal wetlands: Responses to recent changes in sea level

    NASA Astrophysics Data System (ADS)

    Ward, Raymond D.; Teasdale, Phillip A.; Burnside, Niall G.; Joyce, Christopher B.; Sepp, Kalev

    2014-07-01

    Boreal Baltic coastal wetlands differ markedly from temperate salt marshes by their generally low maximum elevation (between 0 and 1 m above m.s.l.), low seaward gradients and the irregular nature of flooding that is characteristic of the NE Baltic Sea coastal region. As a result of these factors these wetlands have been considered to be threatened by future sea level rise. This study presents results for two Boreal Baltic coastal wetland sites in Estonia using the 210Pb and 137Cs radiometric dating methods to investigate the sedimentary development of these coastal systems. Recent coastal evolution has been largely driven by continuing glacio-isostatic adjustment (GIA), with maximum rates of 2.8 mm yr- 1 around the NW Estonian coast and the inherited geomorphological setting of generally flat-lying coastal topography, resulting in coastal emergence. Broad agreement exists between calculated rates of sedimentation identified within the core sequences. Average rates of sedimentation using the 210Pbexcess CF:CS (or ‘simple’) model range between 0.2 and 1.3 mm yr- 1. These rates are corroborated using 137Cs, which also suggests an increase in sedimentation rates during recent decades approaching maximum values for current land uplift. Additionally, the 210Pbexcess CRS model reveals periods of sedimentation greatly in excess of these values in response to coastal flooding from known storm activity. This study indicates that changes in sea level caused by variations in atmospheric pressure and storm surges can contribute a significant sedimentary component, which coupled with GIA processes has driven coastal wetland development/emergence and the historical progradation of these wetland systems. The recent acceleration in the rate of global sea-level rise may subtly alter this relationship. However current rates of GIA and sedimentation will continue to maintain the progradation of Boreal Baltic coastal wetlands in the coming decades.

  17. Field experiments with painted sediments - a tool for understanding coastal processes.

    NASA Astrophysics Data System (ADS)

    Tõnisson, Hannes; Kont, Are; Suursaar, Ülo; Orviku, Kaarel

    2014-05-01

    Surf and the swash zones comprise regions of the coastal zone where waves dissipate or reflect their remaining energy after propagation from the open sea towards the coast. Within this region most of the sediment transport occurs giving rise to the generation of rapid coastal changes. Current understanding of the morphodynamics in this region is limited. Therefore, swash/surf zone hydrodynamics and sediment transport have been active topics of research over the past decades. Several laboratory experiments have been conducted to quantify coastal processes over the past decades. However, few experiments have been carried out in the natural environment. Analysis of painted sediments was carried out for the current study. Sorted particles with the following diameters were used: 1-2.5 cm (yellow), 2.5-5 cm (red) and 5-10 cm (blue). The sediments were painted with non-fluorescent, water and wear resistant colors, stacked in piles and placed at depths of 0.5-10 m at several study sites all along the Estonian coast. The locations were positioned and were photographed. The sediment piles placed in the sea were monitored at least once after an intense storm or once before and after the storm season. Additional tests were carried out on the swash zone, where the sediments were accumulated in a continuous line from -0.5...+1.3 m. Distances from the initial source of the sediments as well as the elevation of the painted sediment particles was calculated and analyzed. Recorded changes were compared with the measured and modeled wave parameters (by using RDCP and simple point model). We may conclude that most storm waves break at depths of 2-4 m. However, this zone might extend seaward during strong storm events and wave braking may occur even at 6 m depth. There is very active sediment transport in this zone and particles with a 1-10 cm diameter are usually transported towards the shore. We were able to record that the painted sediments moved up to 20 meters towards the shore

  18. Assessment of trace pollutants in Korean coastal sediments using the triad approach: a review.

    PubMed

    Khim, Jong Seong; Hong, Seongjin

    2014-02-01

    Here we summarize and review the previous efforts on sediment assessment together with major scientific findings that were conducted in the Korean coastal waters since late 1990s. Towards integrated triad analysis, sediment data (>1700 samples) reported from the Korean coasts were collected and reviewed of which data collectively includes three components of chemical, toxicological, and ecological measures. First, the chemistry data suggested widespread and historic distribution of sedimentary pollutants along the Korean coasts. Spatial distributions suggested that their sources were independent of each other, while some localized areas (highlighted for Lake Shihwa, Masan Bay, and Ulsan Bay) and zones with extremely high pressures of certain pollutants were also identified. The mass balance analyses and/or direct correlations linking triad components reflected a general agreement between endpoints. The benthic community responses given by species occurrence and diversity also reflected the type and degree of sediment contamination, however, could not be fully explained by the known target chemicals. Overall, the triad assessment of trace pollutants in Korean coastal sediments seemed to be useful and much powerful when all the components are fully addressed. PMID:23972325

  19. Biotransformation of polycyclic aromatic hydrocarbons by yeasts isolated from coastal sediments.

    PubMed Central

    MacGillivray, A R; Shiaris, M P

    1993-01-01

    Yeast abundance in the sediments of 13 coastal sites in Massachusetts was quantified, and the potential of yeast isolates to biotransform polycyclic aromatic hydrocarbons (PAHs) was determined. Plate counts of yeasts varied between 10(2) to 10(7) CFU g (dry weight) of sediment-1. The most abundant genera isolated and identified included Candida, Cryptococcus, Rhodotorula, Torulopsis, and Trichosporon. More than 50% of the isolates from heavily contaminated sites transformed phenanthrene, as determined by spray-plate screening. The plate counts of phenanthrene-transforming yeasts correlated significantly to the sediment concentrations of phenanthrene. Transformation of [9-14C]phenanthrene and [12-14C]benz[a]anthracene by individual isolates varied greatly, ranging from 0.15 to 8.15 mumol of PAH g-1 in 120-h incubations. Of the isolated yeasts, Trichosporon penicillatum exhibited the greatest capacity for phenanthrene transformation. The ability to transform PAHs appears to be widespread among yeasts in coastal sediments. PMID:8517753

  20. Hot-Alkaline DNA Extraction Method for Deep-Subseafloor Archaeal Communities

    PubMed Central

    Terada, Takeshi; Hoshino, Tatsuhiko; Inagaki, Fumio

    2014-01-01

    A prerequisite for DNA-based microbial community analysis is even and effective cell disruption for DNA extraction. With a commonly used DNA extraction kit, roughly two-thirds of subseafloor sediment microbial cells remain intact on average (i.e., the cells are not disrupted), indicating that microbial community analyses may be biased at the DNA extraction step, prior to subsequent molecular analyses. To address this issue, we standardized a new DNA extraction method using alkaline treatment and heating. Upon treatment with 1 M NaOH at 98°C for 20 min, over 98% of microbial cells in subseafloor sediment samples collected at different depths were disrupted. However, DNA integrity tests showed that such strong alkaline and heat treatment also cleaved DNA molecules into short fragments that could not be amplified by PCR. Subsequently, we optimized the alkaline and temperature conditions to minimize DNA fragmentation and retain high cell disruption efficiency. The best conditions produced a cell disruption rate of 50 to 80% in subseafloor sediment samples from various depths and retained sufficient DNA integrity for amplification of the complete 16S rRNA gene (i.e., ∼1,500 bp). The optimized method also yielded higher DNA concentrations in all samples tested compared with extractions using a conventional kit-based approach. Comparative molecular analysis using real-time PCR and pyrosequencing of bacterial and archaeal 16S rRNA genes showed that the new method produced an increase in archaeal DNA and its diversity, suggesting that it provides better analytical coverage of subseafloor microbial communities than conventional methods. PMID:24441163

  1. Evaluation of submarine strain-gage systems for monitoring coastal sediment migration

    NASA Technical Reports Server (NTRS)

    Shideler, G. L.; Mcgrath, D. G.

    1973-01-01

    Single and multiple strain-gage systems were respectively evaluated as in situ point and areal sensors for monitoring sand-height variations in coastal environments. Static loading tests indicate that gage response pressure is linear for sand heights up to 24 inches. Response pressures are a function of both sand height and aggregate density, with density being influenced by both sediment texture and degree of compaction. Poorer sediment sorting and greater compaction result in higher response pressures. Field tests in a beach foreshore environment indicate that the gage systems are effective qualitative instruments for monitoring long-period migration trends of beach sediments; whereas, short-period responses are not sufficiently reliable. The durability and compactness of the gage systems must be substantially increased for effective field operations. It is recommended that the systems' qualitative potentials be further developed, whereas their development as quantitative instruments be terminated. Further development should emphasize the construction of remote recording systems designed for semipermanent installation.

  2. A survey of metal and pesticide levels in stormwater retention pond sediments in coastal South Carolina.

    PubMed

    Crawford, Kevin D; Weinstein, John E; Hemingway, Ronald E; Garner, Thomas R; Globensky, Gavin

    2010-01-01

    During the summer of 2007, sediment samples were collected from 16 stormwater detention ponds and 2 reference ponds located in coastal South Carolina. The sediments were analyzed for more than 30 pesticides with current and historical uses, six polybrominated diphenyl ethers (PBDEs), and seven metals. The results are compared with established screening assessment parameters, with copper found to be the contaminant of highest concern. Lead levels were found to correlate well with pond drainage area, while copper and zinc levels correlated with both pond drainage area and pond surface area. Chlorpyrifos levels were found to correlate with pond surface area. Our results also show that ponds draining commercial areas were likely to have higher levels of zinc and lead in the sediments compared to other pond classes. PMID:19499159

  3. Sediment and nutrients transport in watershed and their impact on coastal environment

    PubMed Central

    Ikeda, Syunsuke; Osawa, Kazutoshi; Akamatsu, Yoshihisa

    2009-01-01

    Sediment and nutrients yields especially from farmlands were studied in a watershed in Ishigaki island, Okinawa, Japan. The transport processes of these materials in rivers, mangrove, lagoon and coastal zones were studied by using various observation methods including stable isotope analysis. They were simulated by using a WEPP model which was modified to be applicable to such small islands by identifying several factors from the observations. The model predicts that a proper combination of civil engineering countermeasure and change of farming method can reduce the sediment yield from the watershed by 74%. Observations of water quality and coral recruitment test in Nagura bay indicate that the water is eutrophicated and the corals cannot grow for a long time. Based on these observations, a quantitative target of the reduction of sediment and nutrients yield in watershed can be decided rationally. PMID:19907124

  4. Abiotic reduction of trifluralin and pendimethalin by sulfides in black-carbon-amended coastal sediments.

    PubMed

    Gong, Wenwen; Liu, Xinhui; Xia, Shuhua; Liang, Baocui; Zhang, Wei

    2016-06-01

    Dinitroaniline herbicides such as trifluralin and pendimethalin are persistent bioaccumulative toxins to aquatic organisms. Thus, in-situ remediation of contaminated sediments is desired. This study investigated whether black carbons (BCs), including apple wood charcoal (BC1), rice straw biochar (BC2), and activated carbon (BC3), could facilitate abiotic reduction of trifluralin and pendimethalin by sulfides of environmentally-relevant concentrations in anoxic coastal sediments. The reduction rates of trifluralin and pendimethalin increased substantially with increasing BC dosages in the sediments. This enhancing effect was dependent on BC type with the greatest for BC3 followed by BC1 and BC2, which well correlated with their specific surface area. The pseudo-first order reduction rate constants (kobs) for BC3-amended sediment (2%) were 13- and 14 times the rate constants in the BC-free sediment. The reduction rates increased with increasing temperature from 8 to 25°C in the BC-amended sediment, following the Arrhenius relationship. Finally, through molecular modeling by density functional theory and reaction species identification from mass spectra, molecular pathways of trifluralin and pendimethalin reduction were elucidated. In contrary to the separate sequential reduction of each nitro group to amine group, both nitro groups, first reduced to nitroso, then eventually to amine groups. PMID:26905610

  5. Vivianite represents a major sink for phosphorus in methanogenic coastal surface sediments

    NASA Astrophysics Data System (ADS)

    Egger, Matthias; Jilbert, Tom; Behrends, Thilo; Rivard, Camille; Slomp, Caroline P.

    2015-04-01

    Studies of authigenic phosphorus (P) minerals in marine sediments typically focus on authigenic carbonate fluorapatite, which is considered to be the major sink for P in marine sediments and can easily be quantified with the SEDEX sequential extraction method for P (Ruttenberg, 1992). The role of other potentially important authigenic P phases, such as the reduced iron (Fe) phosphate mineral vivianite (Fe(II)3(PO4)*8H2O) has so far largely been ignored. This is likely partly due to the fact that the SEDEX method does not distinguish between vivianite and P associated with Fe-oxides. In this study, we show that vivianite can be quantified in marine sediments by combining the SEDEX method with more direct technical and analytical tools such as scanning electron microscope energy dispersive spectroscopy (SEM-EDS) and powder X-ray diffraction (XRD) of wet-sieved sediment samples, as well as synchrotron-based microanalysis (X-ray absorption near-edge structure, XANES) of resin-embedded sediments. Our results demonstrate that vivianite represents a major burial sink for P below the sulfate/methane transition zone in Bothnian Sea sediments, accounting for up to 50 % of the total P burial. The vivianite in the brackish sediment contains significant amounts of Mn (~ 4-8 wt.%) but lower contents of Mg (~ 1-3 wt.%) similar to vivianite obtained from freshwater sediments. We further show that anaerobic oxidation of methane (AOM) drives a sink-switching from Fe-oxide bound P to vivianite by causing the release of both phosphate (AOM with sulfate and Fe-oxides) and ferrous Fe (AOM with Fe-oxides) to the porewater allowing supersaturation with respect to vivianite to be reached. Our results indicate that methane likely plays a key role in providing conditions that allow for vivianite authigenesis in coastal surface sediments. We suggest that vivianite formation may provide an important burial sink for P in many brackish coastal environments worldwide. References: Ruttenberg K. C

  6. Vivianite is a major sink for phosphorus in methanogenic coastal surface sediments

    NASA Astrophysics Data System (ADS)

    Egger, Matthias; Jilbert, Tom; Behrends, Thilo; Rivard, Camille; Slomp, Caroline P.

    2015-11-01

    Studies of authigenic phosphorus (P) minerals in marine sediments typically focus on authigenic carbonate fluorapatite, which is considered to be the major sink for P in marine sediments and can easily be semi-quantitatively extracted with the SEDEX sequential extraction method. The role of other potentially important authigenic P phases, such as the reduced iron (Fe) phosphate mineral vivianite (Fe(II)3(PO4)*8H2O) has so far largely been ignored in marine systems. This is, in part, likely due to the fact that the SEDEX method does not distinguish between vivianite and P associated with Fe-oxides. Here, we show that vivianite can be quantified in marine sediments by combining the SEDEX method with microscopic and spectroscopic techniques such as micro X-ray fluorescence (μXRF) elemental mapping of resin-embedded sediments, as well as scanning electron microscope-energy dispersive spectroscopy (SEM-EDS) and powder X-ray diffraction (XRD). We further demonstrate that resin embedding of vertically intact sediment sub-cores enables the use of synchrotron-based microanalysis (X-ray absorption near-edge structure (XANES) spectroscopy) to differentiate between different P burial phases in aquatic sediments. Our results reveal that vivianite represents a major burial sink for P below a shallow sulfate/methane transition zone in Bothnian Sea sediments, accounting for 40-50% of total P burial. We further show that anaerobic oxidation of methane (AOM) drives a sink-switching from Fe-oxide bound P to vivianite by driving the release of both phosphate (AOM with sulfate and Fe-oxides) and ferrous Fe (AOM with Fe-oxides) to the pore water allowing supersaturation with respect to vivianite to be reached. The vivianite in the sediment contains significant amounts of manganese (∼4-8 wt.%), similar to vivianite obtained from freshwater sediments. Our results indicate that methane dynamics play a key role in providing conditions that allow for vivianite authigenesis in coastal

  7. NEAR-COASTAL SEDIMENT AS A HABITAT IN THE GULF OF MEXICO: CHEMICAL QUALITY, TOXICITY, AND BENTHIC COMMUNITY COMPOSITION

    EPA Science Inventory

    Sediment quality was determined in a multiyear study for 108 near-coastal sites located in Mississippi, Alabama and Florida. The primary objective of the study was to determine the relative impact of common stressor sources on sediment quality utilizing a weight-of-evidence appro...

  8. Allochromatium humboldtianum sp. nov., isolated from soft coastal sediments.

    PubMed

    Serrano, Wilbert; Schrübbers, Jan; Amann, Rudolf; Fischer, Ulrich

    2015-09-01

    A novel purple sulfur bacterium, strain AX1YPE(T), was isolated from marine sediments sampled at 47 m depth in Callao Bay, Perú. Strain AX1YPE grew anaerobically, synthesizing bacteriochlorophyll a and carotenoid pigments of the spirilloxanthin series. Cells were Gram-stain-negative rods and actively motile by a polar flagellum. Strain AX1YPE was able to grow photolithoautotrophically with sulfide and thiosulfate as electron donors. This new phototrophic organism utilized ammonium salt, N2, urea and glutamate as nitrogen sources. Strain AX1YPE had a DNA base composition of 63.9 mol% G+C. Analysis of the 16S rRNA gene sequence indicated that strain AX1YPE clusters in a separate branch within the genus Allochromatium of the family Chromatiaceae. Strain AX1YPE showed 16S rRNA gene sequence similarities of 98.2% with Allochromatium vinosum DSM 180(T) and Allochromatium minutissimum DSM 1376(T), 98.1% with Allochromatium phaeobacterium JA144(T), 97.3% with Allochromatium renukae DSM 18713(T) and 96.8% with Allochromatium warmingiiDSM 173(T). DNA-DNA hybridization values to the type strains of its closest relatives, A. vinosum and A. minutissimum, were 59 and 64%, respectively. The predominant fatty acid of strain AX1YPE(T) was C18 : 1ω;7c and it notably possessed C20 : 1 as a minor component. PCR-based molecular typing (Box A1R and randomly amplified polymorphic DNA) produced a unique banding pattern for strain AX1YPE(T) in comparison with the type strains of A. vinosum and A. minutissimum. Based on data from this polyphasic taxonomic study, which also includes average nucleotide identity comparison of five concatenated housekeeping genes, strain AX1YPE(T) is considered to represent a novel species of the genus Allochromatium for which the name Allochromatiumhumboldtianum sp. nov. is proposed. The type strain is AX1YPE(T) ( = DSM 21881(T) = KCTC 15448(T)). PMID:26025943

  9. Microbial processes and organic priority substances in marine coastal sediments (Adriatic Sea, Italy)

    NASA Astrophysics Data System (ADS)

    Zoppini, Annamaria; Ademollo, Nicoletta; Amalfitano, Stefano; Dellisanti, Walter; Lungarini, Silvia; Miserocchi, Stefano; Patrolecco, Luisa; Langone, Leonardo

    2015-04-01

    PERSEUS EU FP7 Project aims to identify the interacting patterns of natural and human-derived pressures to assess their impact on marine ecosystems and, using the objectives and principles of the Marine Strategy Framework Directive (MSFD) as a vehicle, to design an effective and innovative research governance framework based on sound scientific knowledge. In the frame of this Project (subtask 1.3.3 ADREX: Adriatic and Ionian Seas Experiment), monitoring surveys were conducted in the Adriatic Sea (Italy) in order to study the variation of structural and functional characteristics of native bacterial communities and the occurrence of selected classes of organic priority substances in sediments. The study area represents a good natural laboratory sensitive to climate variability and human pressure, owing to the semi-enclosed nature of the Adriatic Sea and to the increasing trend of human activities in the coastal regions. During the cruise ADRI-13 (November 2013) and ADRI-14 (October 2014) we sampled several coastal sites from the mouth of the Po River to the Otranto strait. Surface sediments were collected in all areas, while sediment cores were sampled in selected sites. Microbes associated with marine sediments play an important role in the C-flux being responsible for the transformation of organic detritus (autochthonous and allochthonous) into biomass. The sediment bacterial abundance was determined by epifluorescence microscopy and the rate of bacterial carbon production by measuring the 3H-leucine uptake rates. The community respiration rate was estimated by the measurement of the electron transport system (ETS) activity. The sediment contamination level was determined by measuring the concentration of contaminants included in the list of organic priority substances: PAHs, bisphenol A (BPA), alkylphenols (APs). The extraction/clean-up of PAHs, BPA and APs was performed by ultrasonic bath with the appropriate solvents, followed by analytical determination with

  10. Recovery and validation of historical sediment quality data from coastal and estuarine areas: An integrated approach

    USGS Publications Warehouse

    Manheim, F. T.; Buchholtz ten Brink, M. R.; Mecray, E.L.

    1999-01-01

    A comprehensive database of sediment chemistry and environmental parameters has been compiled for Boston Harbor and Massachusetts Bay. This work illustrates methodologies for rescuing and validating sediment data from heterogeneous historical sources. It greatly expands spatial and temporal data coverage of estuarine and coastal sediments. The database contains about 3500 samples containing inorganic chemical, organic, texture and other environmental data dating from 1955 to 1994. Cooperation with local and federal agencies as well as universities was essential in locating and screening documents for the database. More than 80% of references utilized came from sources with limited distribution (gray literature). Task sharing was facilitated by a comprehensive and clearly defined data dictionary for sediments. It also served as a data entry template and flat file format for data processing and as a basis for interpretation and graphical illustration. Standard QA/QC protocols are usually inapplicable to historical sediment data. In this work outliers and data quality problems were identified by batch screening techniques that also provide visualizations of data relationships and geochemical affinities. No data were excluded, but qualifying comments warn users of problem data. For Boston Harbor, the proportion of irreparable or seriously questioned data was remarkably small (<5%), although concentration values for metals and organic contaminants spanned 3 orders of magnitude for many elements or compounds. Data from the historical database provide alternatives to dated cores for measuring changes in surficial sediment contamination level with time. The data indicate that spatial inhomogeneity in harbor environments can be large with respect to sediment-hosted contaminants. Boston Inner Harbor surficial sediments showed decreases in concentrations of Cu, Hg, and Zn of 40 to 60% over a 17-year period.A comprehensive database of sediment chemistry and environmental

  11. Coastal landsliding and catastrophic sedimentation triggered by Cretaceous-Tertiary bolide impact: A Pacific margin example?

    NASA Astrophysics Data System (ADS)

    Busby, Cathy J.; Yip, Grant; Blikra, Lars; Renne, Paul

    2002-08-01

    We report here the first-recognized Pacific margin stratigraphic sequence containing evidence for catastrophic landsliding attributed to bolide impact related seismic shocking at the Cretaceous-Tertiary (K-T) boundary. The K-T boundary is not commonly preserved in stratigraphic sequences of the Pacific margin, but we have discovered it within a coastal paleovalley in Baja California, Mexico (near El Rosario). This 5-km-wide, 15-km-long, and 200-m-deep coastal paleovalley formed by massive gravitational collapses and rapidly filled with coastal (shallow marine and lesser fluvial) gravels and sands, as well as slide sheets of marine mudstone that range from meters to kilometers in length. We infer that seismic shocking caused liquefaction and extremely rapid sedimentation of the gravels and sands, simultaneous with unleashing of slide sheets. Laser-heating 40Ar/39Ar data for biotite, hornblende, and plagioclase (single crystal and bulk step heating) on a 20-m-thick pumice lapilli tuff in the middle of the valley fill give an age of 65.5 ± 0.6 Ma; this is indistinguishable from the age of Haitian tektites dated by the same laboratory. Our new Pacific margin sequence, like many K-T boundary sequences in the Gulf of Mexico Caribbean region, provides evidence of giant landslides and catastrophic sedimentation 1800 km from the bolide impact site.

  12. Heavy metal contamination of coastal lagoon sediments: Fongafale Islet, Funafuti Atoll, Tuvalu.

    PubMed

    Fujita, Masafumi; Ide, Yoichi; Sato, Daisaku; Kench, Paul S; Kuwahara, Yuji; Yokoki, Hiromune; Kayanne, Hajime

    2014-01-01

    To evaluate contamination of coastal sediments along Fongafale Islet, Central Pacific, a field survey was conducted in densely populated, sparsely populated, open dumping and undisturbed natural areas. Current measurements in shallow water of the lagoon indicated that contaminants from the densely populated area would only be transported for a small proportion of a tidal cycle. Acid-volatile sulfides were detected in both the intertidal beach and nearshore zones of the densely populated area, whereas these were no detection in the other areas. This observation lends support to argument that the coastal pollution mechanism that during ebb tide, domestic wastewater leaking from poorly constructed sanitary facilities seeps into the coast. The total concentrations of Cr, Mn, Ni, Cu, Zn, Cd and Pb were relatively high in all of the areas except the undisturbed natural area. The indices of contamination factor, pollution load index and geoaccumulation index were indicative of heavy metal pollution in the three areas. The densely populated area has the most significant contamination; domestic wastewater led to significant contamination of coastal sediments with Cr, Zn, Cu, Pb and Cd. The open dumping area is noteworthy with respect to Mn and Ni, which can be derived from disposed batteries. PMID:24200049

  13. Metal contamination in water, sediment and biota from a semi-enclosed coastal area.

    PubMed

    Aly, Walid; Williams, Ian D; Hudson, Malcolm D

    2013-05-01

    This study identifies and quantifies the spatial variations of metal contamination in water, sediment and biota: the common cockle (Cerastoderma edule) and the Mermaid's glove sponge (Haliclona oculata), within a heavily anthropogenically impacted semi-enclosed estuarine-coastal area with a low ability to disperse and flush contaminants (Poole Harbour, UK). The results showed that metal contamination was detected in all environmental compartments. Water was polluted with As, and Hg sediment metals were mostly within "the possible effect range" in which adverse effects occasionally occurs. Cockles had considerable concentrations of Ni, Ag and Hg in areas close to pollution sources, and sponges accumulate Cu and Zn with very high magnitude. A systematic monitoring approach that includes biological monitoring techniques, which covers all embayments, is needed, and an integrated management of the semi-enclosed coastal zones should be based on the overall hydrological characteristics of these sensitive areas and their ability to self-restore which is different than open coastal zones. PMID:23014922

  14. Relationships between pesticides and organic carbon fractions in sediments of the Danshui River estuary and adjacent coastal areas of Taiwan.

    PubMed

    Hung, Chin-Chang; Gong, Gwo-Ching; Chen, Hung-Yu; Hsieh, Hwey-Lian; Santschi, Peter H; Wade, Terry L; Sericano, Jose L

    2007-07-01

    In order to understand the fate of pesticides in marine environments, concentrations of pesticides and different carbonaceous fractions were determined for surface sediments in the Danshui River and nearby coastal areas of Taiwan. The major compounds detected were tetrachlorobenzene, HCHs, chlordane, aldrin, DDDs, DDEs and DDTs. Total concentrations of pesticides in the sediments ranged from not detectable to 23 ng g(-1), with the maximum value detected near the discharge point of the marine outfall from the Pali sewage treatment plant. These results confirm that pesticides persist in estuarine and nearby coastal environments of the Danshui River well after their ban. Concentrations of total pesticides significantly correlate with concentrations of total organic carbon and black carbon in these sediments, suggesting that total organic carbon and black carbon regulate the distribution of trace organic pollutants in fluvial and coastal marine sediments. PMID:17395347

  15. Brevetoxin persistence in sediments and seagrass epiphytes of east Florida coastal waters

    PubMed Central

    Hitchcock, Gary L.; Fourqurean, James W.; Drake, Jeana L.; Mead, Ralph N.; Heil, Cynthia A.

    2012-01-01

    A bloom of Karenia brevis Davis developed in September 2007 near Jacksonville, Florida and subsequently progressed south through east Florida coastal waters and the Atlantic Intracoastal Waterway (ICW). Maximum cell abundances exceeded 106 cells L−1 through October in the northern ICW between Jacksonville and the Indian River Lagoon. The bloom progressed further south during November, and terminated in December 2007 at densities of 104 cells L−1 in the ICW south of Jupiter Inlet, Florida. Brevetoxins were subsequently sampled in sediments and seagrass epiphytes in July and August 2008 in the ICW. Sediment brevetoxins occurred at concentrations of 11–15 ng PbTx-3 equivalents (g dry wt sediment)−1 in three of five basins in the northern ICW during summer 2008. Seagrass beds occur south of the Mosquito Lagoon in the ICW. Brevetoxins were detected in six of the nine seagrass beds sampled between the Mosquito Lagoon and Jupiter Inlet at concentrations of 6–18 ng (g dry wt epiphytes)−1. The highest brevetoxins concentrations were found in sediments near Patrick Air Force Base at 89 ng (g dry wt sediment)−1. In general, brevetoxins occurred in either seagrass epiphytes or sediments. Blades of the resident seagrass species have a maximum life span of less than six months, so it is postulated that brevetoxins could be transferred between epibenthic communities of individual blades in seagrass beds. The occurrence of brevetoxins in east Florida coast sediments and seagrass epiphytes up to eight months after bloom termination supports observations from the Florida west coast that brevetoxins can persist in marine ecosystems in the absence of sustained blooms. Furthermore, our observations show that brevetoxins can persist in sediments where seagrass communities are absent. PMID:23762030

  16. Brevetoxin persistence in sediments and seagrass epiphytes of east Florida coastal waters.

    PubMed

    Hitchcock, Gary L; Fourqurean, James W; Drake, Jeana L; Mead, Ralph N; Heil, Cynthia A

    2012-01-01

    A bloom of Karenia brevis Davis developed in September 2007 near Jacksonville, Florida and subsequently progressed south through east Florida coastal waters and the Atlantic Intracoastal Waterway (ICW). Maximum cell abundances exceeded 10(6) cells L(-1) through October in the northern ICW between Jacksonville and the Indian River Lagoon. The bloom progressed further south during November, and terminated in December 2007 at densities of 10(4) cells L(-1) in the ICW south of Jupiter Inlet, Florida. Brevetoxins were subsequently sampled in sediments and seagrass epiphytes in July and August 2008 in the ICW. Sediment brevetoxins occurred at concentrations of 11-15 ng PbTx-3 equivalents (g dry wt sediment)(-1) in three of five basins in the northern ICW during summer 2008. Seagrass beds occur south of the Mosquito Lagoon in the ICW. Brevetoxins were detected in six of the nine seagrass beds sampled between the Mosquito Lagoon and Jupiter Inlet at concentrations of 6-18 ng (g dry wt epiphytes)(-1). The highest brevetoxins concentrations were found in sediments near Patrick Air Force Base at 89 ng (g dry wt sediment)(-1). In general, brevetoxins occurred in either seagrass epiphytes or sediments. Blades of the resident seagrass species have a maximum life span of less than six months, so it is postulated that brevetoxins could be transferred between epibenthic communities of individual blades in seagrass beds. The occurrence of brevetoxins in east Florida coast sediments and seagrass epiphytes up to eight months after bloom termination supports observations from the Florida west coast that brevetoxins can persist in marine ecosystems in the absence of sustained blooms. Furthermore, our observations show that brevetoxins can persist in sediments where seagrass communities are absent. PMID:23762030

  17. Marine coastal sediments microbial hydrocarbon degradation processes: contribution of experimental ecology in the omics’era

    PubMed Central

    Cravo-Laureau, Cristiana; Duran, Robert

    2014-01-01

    Coastal marine sediments, where important biological processes take place, supply essential ecosystem services. By their location, such ecosystems are particularly exposed to human activities as evidenced by the recent Deepwater Horizon disaster. This catastrophe revealed the importance to better understand the microbial processes involved on hydrocarbon degradation in marine sediments raising strong interests of the scientific community. During the last decade, several studies have shown the key role played by microorganisms in determining the fate of hydrocarbons in oil-polluted sediments but only few have taken into consideration the whole sediment’s complexity. Marine coastal sediment ecosystems are characterized by remarkable heterogeneity, owning high biodiversity and are subjected to fluctuations in environmental conditions, especially to important oxygen oscillations due to tides. Thus, for understanding the fate of hydrocarbons in such environments, it is crucial to study microbial activities, taking into account sediment characteristics, physical-chemical factors (electron acceptors, temperature), nutrients, co-metabolites availability as well as sediment’s reworking due to bioturbation activities. Key information could be collected from in situ studies, which provide an overview of microbial processes, but it is difficult to integrate all parameters involved. Microcosm experiments allow to dissect in-depth some mechanisms involved in hydrocarbon degradation but exclude environmental complexity. To overcome these lacks, strategies have been developed, by creating experiments as close as possible to environmental conditions, for studying natural microbial communities subjected to oil pollution. We present here a review of these approaches, their results and limitation, as well as the promising future of applying “omics” approaches to characterize in-depth microbial communities and metabolic networks involved in hydrocarbon degradation. In addition

  18. Monitoring of suspended sediment variation using Landsat and MODIS in the Saemangeum coastal area of Korea.

    PubMed

    Min, Jee-Eun; Ryu, Joo-Hyung; Lee, Seok; Son, Seunghyun

    2012-02-01

    Suspended sediment concentration (SS) is an important indicator of marine environmental changes due to natural causes such as tides, tidal currents, and river discharges, as well as human activities such as construction in coastal regions. In the Saemangeum area on the west coast of Korea, construction of a huge tidal dyke for land reclamation has strongly influenced the coastal environment. This study used remotely sensed data to analyze the SS changes in coastal waters caused by the dyke construction. Landsat and MODIS satellite images were used for the spatial analysis of finer patterns and for the detailed temporal analysis, respectively. Forty Landsat scenes and 105 monthly composite MODIS images observed during 1985-2010 were employed, and four field campaigns (from 2005 to 2006) were performed to verify the image-derived SS. The results of the satellite data analyses showed that the seawater was clear before the dyke construction, with SS values lower than 20 g/m(3). These values increased continuously as the dyke construction progressed. The maximum SS values appeared just before completion of the fourth dyke. Values decreased to below 5 g/m(3) after dyke construction. These changes indicated tidal current modification. Some eddies and plumes were observed in the images generated from Landsat data. Landsat and MODIS can reveal that coastal water turbidity was greatly reduced after completion of the construction. PMID:22136763

  19. Widespread contamination of coastal sediments in the Transmanche Channel with anti-androgenic compounds.

    PubMed

    Alvarez-Muñoz, Diana; Indiveri, Paolo; Rostkowski, Pawel; Horwood, Julia; Greer, Emily; Minier, Christophe; Pope, Nick; Langston, William J; Hill, Elizabeth M

    2015-06-30

    This study analysed the levels of androgen receptor antagonist activity in extracts of coastal sediments sampled from estuaries in southern UK and northern France. Anti-androgenic (AA) activity varied between <0.2 and 224.3±38.4μg flutamide equivalents/g dry weight of sediment and was significantly correlated with the total organic carbon and silt content of samples. AA activity was detected in tissues extracts of clams, Scrobicularia plana, sampled from a contaminated estuary, some of which was due to uptake of a series of 4 or 5 ring polycyclic aromatic hydrocarbons (PAHs). Initial studies also indicated that fractionated extracts of male, but not female, clams also contained androgen receptor agonist activity due to the presence of dihydrotestosterone in tissues. This study reveals widespread contamination of coastal sediments of the Transmanche region with anti-androgenic compounds and these contaminants should be investigated for their potential to disrupt sexual differentiation in aquatic organisms. PMID:25496695

  20. Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing.

    PubMed

    Massana, Ramon; Gobet, Angélique; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Chambouvet, Aurélie; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Dolan, John R; Dunthorn, Micah; Edvardsen, Bente; Forn, Irene; Forster, Dominik; Guillou, Laure; Jaillon, Olivier; Kooistra, Wiebe H C F; Logares, Ramiro; Mahé, Frédéric; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C; Probert, Ian; Romac, Sarah; Richards, Thomas; Santini, Sébastien; Shalchian-Tabrizi, Kamran; Siano, Raffaele; Simon, Nathalie; Stoeck, Thorsten; Vaulot, Daniel; Zingone, Adriana; de Vargas, Colomban

    2015-10-01

    Although protists are critical components of marine ecosystems, they are still poorly characterized. Here we analysed the taxonomic diversity of planktonic and benthic protist communities collected in six distant European coastal sites. Environmental deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) from three size fractions (pico-, nano- and micro/mesoplankton), as well as from dissolved DNA and surface sediments were used as templates for tag pyrosequencing of the V4 region of the 18S ribosomal DNA. Beta-diversity analyses split the protist community structure into three main clusters: picoplankton-nanoplankton-dissolved DNA, micro/mesoplankton and sediments. Within each cluster, protist communities from the same site and time clustered together, while communities from the same site but different seasons were unrelated. Both DNA and RNA-based surveys provided similar relative abundances for most class-level taxonomic groups. Yet, particular groups were overrepresented in one of the two templates, such as marine alveolates (MALV)-I and MALV-II that were much more abundant in DNA surveys. Overall, the groups displaying the highest relative contribution were Dinophyceae, Diatomea, Ciliophora and Acantharia. Also, well represented were Mamiellophyceae, Cryptomonadales, marine alveolates and marine stramenopiles in the picoplankton, and Monadofilosa and basal Fungi in sediments. Our extensive and systematic sequencing of geographically separated sites provides the most comprehensive molecular description of coastal marine protist diversity to date. PMID:26119494

  1. Coastal flooding and storm protection program; field verification program. Mathematical modeling of three-dimensional coastal currents and sediment dispersion: model development and application. Final report

    SciTech Connect

    Sheng, Y.P.

    1983-09-01

    A comprehensive model of Coastal currents and sediment dispersion has been formulated and applied to the Mississippi Sound and adjacent continental shelf waters. The study combines mathematical modeling of various hydrodynamic and sedimentary processes with laboratory and field experiments. Of primary importance is the development of an efficient and comprehensive three-dimensional, finite-difference model of coastal, estuarine, and lake currents (CELC3D). The model resolves currents driven by tide, wind, and density gradient. It has been applied to the Mississippi Sound, and results agree well with measured surface displacements and currents during two episodes. Rates of entrainment and deposition of the Mississippi Sound sediments have been studied in a laboratory flume. Effects of (1) bottom shear stress, (2) bed properties, (3) salinity of water, and (4) sediment type on the erodability of sediments have been examined. Results of the laboratory study have been incorporated into the bottom boundary conditions for a three-dimensional sediment dispersion model. Gravitational settling and particle size distribution of the Mississippi Sound sediments were also studied in laboratories. Bottom boundary layer dynamics and wave effect on sediment dispersion have been studied by means of a turbulent transport model and a wave model. Model simulations of sediment dispersion in the Mississippi Sound agree well available data from ship surveys.

  2. Deposit-Feeding Sea Cucumbers Enhance Mineralization and Nutrient Cycling in Organically-Enriched Coastal Sediments

    PubMed Central

    MacTavish, Thomas; Stenton-Dozey, Jeanie; Vopel, Kay; Savage, Candida

    2012-01-01

    Background Bioturbators affect multiple biogeochemical interactions and have been suggested as suitable candidates to mitigate organic matter loading in marine sediments. However, predicting the effects of bioturbators at an ecosystem level can be difficult due to their complex positive and negative interactions with the microbial community. Methodology/Principal Findings We quantified the effects of deposit-feeding sea cucumbers on benthic algal biomass (microphytobenthos, MPB), bacterial abundance, and the sediment–seawater exchange of dissolved oxygen and nutrients. The sea cucumbers increased the efflux of inorganic nitrogen (ammonium, NH4+) from organically enriched sediments, which stimulated algal productivity. Grazing by the sea cucumbers on MPB (evidenced by pheopigments), however, caused a net negative effect on primary producer biomass and total oxygen production. Further, there was an increased abundance of bacteria in sediment with sea cucumbers, suggesting facilitation. The sea cucumbers increased the ratio of oxygen consumption to production in surface sediment by shifting the microbial balance from producers to decomposers. This shift explains the increased efflux of inorganic nitrogen and concordant reduction in organic matter content in sediment with bioturbators. Conclusions/Significance Our study demonstrates the functional role and potential of sea cucumbers to ameliorate some of the adverse effects of organic matter enrichment in coastal ecosystems. PMID:23209636

  3. Microplastics in the Mediterranean Sea: Deposition in coastal shallow sediments, spatial variation and preferential grain size.

    PubMed

    Alomar, Carme; Estarellas, Fernando; Deudero, Salud

    2016-04-01

    Marine litter loads in sea compartments are an emergent issue due to their ecological and biological consequences. This study addresses microplastic quantification and morphological description to test spatial differences along an anthropogenic gradient of coastal shallow sediments and further on to evaluate the preferential deposition of microplastics in a given sediment grain fraction. Sediments from Marine Protected Areas (MPAs) contained the highest concentrations of microplastics (MPs): up to 0.90 ± 0.10 MPs/g suggesting the transfer of microplastics from source areas to endpoint areas. In addition, a high proportion of microplastic filaments were found close to populated areas whereas fragment type microplastics were more common in MPAs. There was no clear trend between sediment grain size and microplastic deposition in sediments, although microplastics were always present in two grain size fractions: 2 mm > x > 1 mm and 1 mm > x 0.5 mm. PMID:26803229

  4. Methane and sulfate dynamics in sediments from mangrove-dominated tropical coastal lagoons, Yucatan, Mexico

    USGS Publications Warehouse

    Chuang, P. C.; Young, Megan B.; Dale, Andrew W.; Miller, Laurence G.; Herrera-Silveira, Jorge A.; Paytan, Adina

    2016-01-01

    Porewater profiles in sediment cores from mangrove-dominated coastal lagoons (Celestún and Chelem) on the Yucatán Peninsula, Mexico, reveal the widespread coexistence of dissolved methane and sulfate. This observation is interesting since dissolved methane in porewaters is typically oxidized anaerobically by sulfate. To explain the observations we used a numerical transport-reaction model that was constrained by the field observations. The model suggests that methane in the upper sediments is produced in the sulfate reduction zone at rates ranging between 0.012 and 31 mmol m−2 d−1, concurrent with sulfate reduction rates between 1.1 and 24 mmol SO42− m−2 d−1. These processes are supported by high organic matter content in the sediment and the use of non-competitive substrates by methanogenic microorganisms. Indeed sediment slurry incubation experiments show that non-competitive substrates such as trimethylamine (TMA) and methanol can be utilized for microbial methanogenesis at the study sites. The model also indicates that a significant fraction of methane is transported to the sulfate reduction zone from deeper zones within the sedimentary column by rising bubbles and gas dissolution. The shallow depths of methane production and the fast rising methane gas bubbles reduce the likelihood for oxidation, thereby allowing a large fraction of the methane formed in the sediments to escape to the overlying water column.

  5. Evidencing the Impact of Coastal Contaminated Sediments on Mussels Through Pb Stable Isotopes Composition.

    PubMed

    Dang, Duc Huy; Schäfer, Jörg; Brach-Papa, Christophe; Lenoble, Véronique; Durrieu, Gaël; Dutruch, Lionel; Chiffoleau, Jean-Francois; Gonzalez, Jean-Louis; Blanc, Gérard; Mullot, Jean-Ulrich; Mounier, Stéphane; Garnier, Cédric

    2015-10-01

    Heavily contaminated sediments are a serious concern for ecosystem quality, especially in coastal areas, where vulnerability is high due to intense anthropogenic pressure. Surface sediments (54 stations), 50 cm interface cores (five specific stations), river particles, coal and bulk Pb plate from past French Navy activities, seawater and mussels were collected in Toulon Bay (NW Mediterranean Sea). Lead content and Pb stable isotope composition have evidenced the direct impact of sediment pollution stock on both the water column quality and the living organisms, through the specific Pb isotopic signature in these considered compartments. The history of pollution events including past and present contaminant dispersion in Toulon Bay were also demonstrated by historical records of Pb content and Pb isotope ratios in sediment profiles. The sediment resuspension events, as simulated by batch experiments, could be a major factor contributing to the high Pb mobility in the considered ecosystem. A survey of Pb concentrations in surface seawater at 40 stations has revealed poor seawater quality, affecting both the dissolved fraction and suspended particles and points to marina/harbors as additional diffuse sources of dissolved Pb. PMID:26348385

  6. Biogenic Mn-Oxides in Subseafloor Basalts

    PubMed Central

    Ivarsson, Magnus; Broman, Curt; Gustafsson, Håkan; Holm, Nils G.

    2015-01-01

    The deep biosphere of the subseafloor basalts is recognized as a major scientific frontier in disciplines like biology, geology, and oceanography. Recently, the presence of fungi in these environments has involved a change of view regarding diversity and ecology. Here, we describe fossilized fungal communities in vugs in subseafloor basalts from a depth of 936.65 metres below seafloor at the Detroit Seamount, Pacific Ocean. These fungal communities are closely associated with botryoidal Mn oxides composed of todorokite. Analyses of the Mn oxides by Electron Paramagnetic Resonance spectroscopy (EPR) indicate a biogenic signature. We suggest, based on mineralogical, morphological and EPR data, a biological origin of the botryoidal Mn oxides. Our results show that fungi are involved in Mn cycling at great depths in the seafloor and we introduce EPR as a means to easily identify biogenic Mn oxides in these environments. PMID:26107948

  7. Biogenic Mn-Oxides in Subseafloor Basalts.

    PubMed

    Ivarsson, Magnus; Broman, Curt; Gustafsson, Håkan; Holm, Nils G

    2015-01-01

    The deep biosphere of the subseafloor basalts is recognized as a major scientific frontier in disciplines like biology, geology, and oceanography. Recently, the presence of fungi in these environments has involved a change of view regarding diversity and ecology. Here, we describe fossilized fungal communities in vugs in subseafloor basalts from a depth of 936.65 metres below seafloor at the Detroit Seamount, Pacific Ocean. These fungal communities are closely associated with botryoidal Mn oxides composed of todorokite. Analyses of the Mn oxides by Electron Paramagnetic Resonance spectroscopy (EPR) indicate a biogenic signature. We suggest, based on mineralogical, morphological and EPR data, a biological origin of the botryoidal Mn oxides. Our results show that fungi are involved in Mn cycling at great depths in the seafloor and we introduce EPR as a means to easily identify biogenic Mn oxides in these environments. PMID:26107948

  8. Phosphorus cycling in the deep subseafloor biosphere at North Pond

    NASA Astrophysics Data System (ADS)

    Defforey, D.; Paytan, A.

    2013-12-01

    Phosphorus is a macronutrient involved both in functional and structural components of all living cells. This makes it an essential nutrient for life, including microbial life in the deep subseafloor habitat. Phosphorus availability in this environment is limited since it is thought to be mainly present in refractory mineral phases. However, recent estimates suggest that the deep biosphere may contain up to 1% of Earth's total biomass, which implies that microorganisms may possess mechanisms to harvest recalcitrant phosphorus compounds in this environment. This study sheds light on those mechanisms by investigating phosphorus cycling in deep open-ocean sediments using stable oxygen isotope ratios in phosphate. Furthermore, this study provides insight into changes in phosphorus bioavailability and mobility under a range of natural environmental conditions within the deep biosphere. Sediment samples were collected from four boreholes drilled during the IODP Expedition 336 to North Pond, an isolated sediment pond on the western flank of the Mid-Atlantic Ridge. Sedimentary phosphorus compounds are characterized using sequential extractions (SEDEX), which separate them into five distinct pools. Phosphate from the various extracts are then concentrated, purified through a series of steps, then converted to silver phosphate, which is pyrolyzed and analyzed by continuous-flow isotope ratio mass spectrometry (CF-IRMS). The isotopic signatures and/or fractionations associated with many of the potential reactions and transformations operating in the P cycle have been determined, and provide the basis for interpreting isotopic data that are obtained from the phosphate extracts.

  9. Diversity and composition of sediment bacteria in subtropical coastal wetlands of North Stradbroke Island, Queensland, Australia

    NASA Astrophysics Data System (ADS)

    Chuvochina, Maria; Sampayo, Eugenia; Welti, Nina; Hayes, Matthew; Lu, Yang; Lovelock, Catherine; Lockington, David

    2013-04-01

    Coastal wetlands provide a wide variety of important ecosystem services but continue to suffer disturbance, degradation and deforestation. Sediment bacteria are responsible for major nutrient transformation and recycling in these ecosystems. Insight into microbial community composition and the factors that determine them may improve our understanding of biogeochemical processes, food web dynamics, biodegradation processes and, thus, help to develop the management strategies for preserving the ecosystem health and services. Characterizing shifts in community taxa along environmental gradients has been shown to provide a useful tool for determining the major drivers affecting community structure and function. North Stradbroke Island (NSI) in Southern Queensland presents considerable habitat diversity including variety of groundwater dependent ecosystems such as lakes, swamps, sedge-like salt marshes and mangroves. Ecological responses of continuous groundwater extraction for municipal purposes and sand mining operations on NSI are still need to be assessed in order to protect its unique environment. Changes in coastal hydrology due to either climate change or human activity may directly affect microbial populations and, thus, biogeochemical cycles of nutrients. These may result in altering/losing some ecosystem services provided by coastal wetlands. In this study we examine microbial diversity and determine environmental controls on bacterial community structure along a natural transition from freshwater forested wetland (melaleuca woodland), sedge-like salt marsh and into mangroves located at NSI. The study area is characterized by significant groundwater flow, nutrient limitation and sharp transition from one ecosystem type to another. Sediment cores (0-5 cm and 20-25 cm depth) were collected from three representative sites of each zone (mangroves - salt marsh - freshwater wetland) along the salinity gradient in August 2012. Subsamples were set aside for use in

  10. Biotransformation of polycyclic aromatic hydrocarbons by yeasts isolated from coastal sediments

    SciTech Connect

    MacGillivray, A.R.; Shiaris, M.P. )

    1993-05-01

    The environmental significance of fungal transformation of polycyclic aromatic hydrocarbons (PAHs) is of increasing interest. Filamentous fungi and yeast are common in marine environments. However, PAH-degrading marine yeast isolates have not been evaluated for their ability to oxidize PAHs in the presence of alternative carbon sources, though this may be significant in marine environments. In this study phenanthrene and benz[a]anthracese were used as model PAH compounds. The investigation quantified the presence of yeasts in coastal sediments and evaluated their potential to biodegrade PAHs. 50 refs., 4 tabs.

  11. Levels of hydrocarbons in mussels, Mytilus edulis, and surface sediments from Danish coastal areas

    SciTech Connect

    Jensen, K.

    1981-02-01

    Until recently, most effort in oil pollution research has been spent on investigating the effects of oil spills and use of detergents. The effects of long-term low level input to the marine environment are much less elucidated. This study represents the first step in a project concerning chronic oil pollution undertaken by the Marine Pollution Laboratory, Denmark. Results from previous studies on this subject in the area concerned, which have not been internationally published, are also included. In a series of Danish coastal localities, samples of surface sediments (top cm) were taken and samples of blue mussels, Mytilus edulis, were collected by SCUBA diving.

  12. Treated wastewater as a source of sediment contamination in Gulf of Mexico near-coastal areas: A survey

    SciTech Connect

    Lewis, M.; Weber, D.; Stanley, R.; Albrecht, B.

    2000-01-01

    The primary objective of this baseline survey was to provide some needed perspective on the magnitude of sediment contamination associated with wastewater outfalls discharged to Gulf of Mexico near-coastal areas. The chemical quality and toxicities of whole sediments and pore waters collected from three coastal rivers and four coastal bays receiving wastewaters were assessed during a 2-year period. Rooted plants, invertebrates, and fish were used to assess the acute and chronic toxicities of sediments associated with a total of 10 industrial, municipal, steam electric-power generation and forest product wastewater outfalls. Effects on bacterial bioluminescence, early seedling biomass, survival, reproduction, fertility, and growth were determined in bioassays ranging from 30 min to 28 d duration. Sediment chemical contamination was localized and decreased with increasing distance from the discharge areas. The major sediment contaminants, with few exceptions, were divalent trace metals, which increased, on average, by 69% below 8 of the 10 outfalls. However, only a few concentrations exceeded proposed threshold sediment quality assessment guidelines. Toxicity to either the plant or animal test species was observed occasionally below 7 of the 10 outfalls, but its detection was dependent on the type of bioassay and the frequency of use. Consequently, a suite of bioassays conducted on multiple occasions appears to be needed for toxicity assessments of sediments collected below wastewater discharges in the Gulf region to ensure relevancy of the results. This is particularly true for low to moderately contaminated sediments where acute toxicity is uncommon, which was the case in this study.

  13. A statistical experiment design approach for optimizing biodegradation of weathered crude oil in coastal sediments.

    PubMed

    Mohajeri, Leila; Aziz, Hamidi Abdul; Isa, Mohamed Hasnain; Zahed, Mohammad Ali

    2010-02-01

    This work studied the bioremediation of weathered crude oil (WCO) in coastal sediment samples using central composite face centered design (CCFD) under response surface methodology (RSM). Initial oil concentration, biomass, nitrogen and phosphorus concentrations were used as independent variables (factors) and oil removal as dependent variable (response) in a 60 days trial. A statistically significant model for WCO removal was obtained. The coefficient of determination (R(2)=0.9732) and probability value (P<0.0001) demonstrated significance for the regression model. Numerical optimization based on desirability function were carried out for initial oil concentration of 2, 16 and 30 g per kg sediment and 83.13, 78.06 and 69.92 per cent removal were observed respectively, compare to 77.13, 74.17 and 69.87 per cent removal for un-optimized results. PMID:19773160

  14. Spatial distribution of polybrominated diphenyl ethers and hexabromocyclododecanes in sediments from coastal waters of Korea.

    PubMed

    Ramu, Karri; Isobe, Tomohiko; Takahashi, Shin; Kim, Eun-Young; Min, Byung-Yoon; We, Sung-Ug; Tanabe, Shinsuke

    2010-04-01

    Polybrominated diphenyl ethers (PBDEs) and hexabromocyclododecanes (HBCDs) were determined in surface sediments collected from 24 coastal locations in Korea. The concentrations of summation operatorPBDEs (defined as the sum of all targeted PBDE congeners except for BDE-209) and BDE-209 ranged from 0.05 to 32 ng g(-1) dry wt. and from 0.40 to 98 ng g(-1) dry wt., respectively. The PBDE congener compositions were dominated by BDE-209, which is in accordance with the consumption of decaBDE mixture in Korea. HBCD concentrations ranged from 0.39 to 59 ng g(-1) dry wt. Concentrations of PBDEs and HBCDs were found to be higher near locations with industrial complexes and harbors, associating these compounds to urbanization and industrialization. Significant positive correlations between PBDE and HBCD concentrations and organic carbon content in sediments imply the role played by organic matter in the contaminant transport and trapping in the aquatic environment. PMID:20299075

  15. Arsenic fractionation in estuarine sediments: Does coastal eutrophication influence As behavior?

    PubMed

    Sá, Fabian; Sanders, Christian J; Patchineelam, Sambasiva Rao; Machado, Eunice da Costa; Lombardi, Ana Teresa

    2015-07-15

    The Paranaguá Estuarine Complex (PEC) includes the naturally oligotrophic (NO) Mel Island which is surrounded by sea grasses, a naturally eutrophic (NE) Benito Inlet adjacent to mangrove wetlands and the highly impacted eutrophic (IE) Paranaguá Bay, home of one of Brazil's largest ports. The results from this study indicate that reactive As and pyrite increase with sediment depth near Paranaguá port in the IE region. At the NE region, near a mangrove fringe, the reactive As, Fe, Mn and pyrite remained relatively high along the sediment column while near the sea grasses at NO the As contents were low. The degree of trace metal pyritization (DTMP) and the degree of pyritization (DOP) was highest at the IE site, slightly increasing with depth. These baseline results indicate that influence of trophic conditions and presence of marine vegetation may be directly related to As behavior in coastal systems. PMID:25931175

  16. Meso-scale modelling of aeolian sediment input to coastal dunes

    NASA Astrophysics Data System (ADS)

    Delgado-Fernandez, Irene

    2011-07-01

    The collection of a time series coupling hourly wind data (speed and direction) with sand transport over months has provided new insights into the dynamics of transport events that input sediment to the foredune at Greenwich Dunes, Prince Edward Island National Park, Canada. This paper summarises the key aspects of aeolian sediment movement for a period of 9 months and presents a modelling approach for resolving aeolian transport to coastal dunes at the meso-scale. The main hypothesis of the modelling approach is that a small number of key factors control both the occurrence and the magnitude of transport events. Thresholds associated with these factors may be used to filter the time series and isolate potential transport periods over the year. The impacts of nearshore processes are included in the approach as part of the dynamics of coastal dunes, as are supply-limiting factors and trade-offs between fetch distances, angle of wind approach, and beach dimensions. A simple analytical procedure, based on previously published equations, is carried out to assess the general viability of the conceptual approach. Results show that the incorporation of moisture and fetch effects in the calculation of transport for isolated potential transport periods result in improved predictions of sediment input to the dune. Net changes, measured with three different techniques, suggest that survey data with coarse temporal resolution underestimates the amount of sand input to the dune, because sediment is often removed from the embryo dune and foredune by other processes such as wave scarping. Predictions obtained by the proposed modelling approach are of the same order of magnitude as measured deposition and much less than predicted by models based solely on wind speed and direction. Areas for improvement and alternative modelling approaches, such as probabilistic approaches similar to weather forecasting, are covered in the discussion.

  17. Porewater dynamics of silver, lead and copper in coastal sediments and implications for benthic metal fluxes.

    PubMed

    Kalnejais, Linda H; Martin, W R; Bothner, Michael H

    2015-06-01

    To determine the conditions that lead to a diffusive release of dissolved metals from coastal sediments, porewater profiles of Ag, Cu, and Pb have been collected over seven years at two contrasting coastal sites in Massachusetts, USA. The Hingham Bay (HB) site is a contaminated location in Boston Harbor, while the Massachusetts Bay (MB) site is 11 km offshore and less impacted. At both sites, the biogeochemical cycles include scavenging by Fe-oxyhydroxides and release of dissolved metals when Fe-oxyhydroxides are reduced. Important differences in the metal cycles at the two sites, however, result from different redox conditions. Porewater sulfide and seasonal variation in redox zone depth is observed at HB, but not at MB. In summer, as the conditions become more reducing at HB, trace metals are precipitated as sulfides and are no longer associated with Fe-oxyhydroxides. Sulfide precipitation close to the sediment-water interface limits the trace metal flux in summer and autumn at HB, while in winter, oxidation of the sulfide phases drives high benthic fluxes of Cu and Ag, as oxic conditions return. The annual diffusive flux of Cu at HB is found to be significant and contributes to the higher than expected water column Cu concentrations observed in Boston Harbor. At MB, due to the lower sulfide concentrations, the association of trace metals with Fe-oxyhydroxides occurs throughout the year, leading to more stable fluxes. A surface enrichment of solid phase trace metals was found at MB and is attributed to the persistent scavenging by Fe-oxyhydroxides. This process is important, particularly at sites that are less reducing, because it maintains elevated metal concentrations at the surface despite the effects of bioturbation and sediment accumulation, and because it may increase the persistence of metal contamination in surface sediments. PMID:25727674

  18. Polycyclic aromatic hydrocarbons and black carbon in intertidal sediments of China coastal zones: Concentration, ecological risk, source and their relationship.

    PubMed

    Li, Xiaofei; Hou, Lijun; Li, Ye; Liu, Min; Lin, Xianbiao; Cheng, Lv

    2016-10-01

    Polycyclic aromatic hydrocarbons (PAHs) and black carbon (BC) have attracted many attentions, especially in the coastal environments. In this study, spatiotemporal distributions of PAHs and BC, and the correlations between BC and PAHs were investigated in the intertidal sediments of China coastal zones. BC in sediments was measured through dichromate oxidation (BCCr) and thermal oxidation (BCCTO). The concentrations of BCCr in the intertidal sediments ranged between 0.61 and 6.32mgg(-1), while BCCTO ranged between 0.57 and 4.76mgg(-1). Spatial variations of δ(13)C signatures in TOC and BC were observed, varying from -21.13‰ to -24.87‰ and from -23.53‰ to -16.78‰, respectively. PAH contents of sediments ranged from 195.9 to 4610.2ngg(-1) in winter and 98.2 to 2796.5ngg(-1) in summer, and significantly seasonal variations were observed at most sampling sites. However, the results of potential toxicity assessment indicated low ecological risk in the intertidal sediments of China coastal zones. Greater concentrations of PAHs measured in the sediments of estuarine environments indicated that rivers runoff may have been responsible for the higher PAH pollution levels in the intertidal sediments of China coastal zones. Pearson's correlation analysis suggested that pyrogenic compounds of PAH were significantly related to BC, due to that both BC and these compounds derived mainly from the combustion process of fossil fuels and biomass. Overall, increasing energy consumptions caused by anthropogenic activities can contribute more emissions of BC as well as PAHs and thus improve the importance of BC in indicating pyrogenic compounds of PAHs in the intertidal sediments of China coastal zones. PMID:27266522

  19. Quantitative determination of ultra-trace carbazoles in sediments in the coastal environment.

    PubMed

    Chen, Wen-Ling; Xie, Zhiyong; Wolschke, Hendrik; Gandrass, Juergen; Kötke, Danijela; Winkelmann, Magnus; Ebinghaus, Ralf

    2016-05-01

    Carbazole and some of its derivatives may possess dioxin-like toxicity and could be persistent in the environment, but information on their distribution and environmental fate is limited. This study developed and validated an ultra-trace targeted-analysis method for the determination of carbazole, 1,2-benzocarbazole, and 13 halogenated carbazoles in sediments from the river, coast, and North Sea. An 8-g sediment sample was extracted using accelerated solvent extraction combined with in-cell cleanup and analyzed using gas chromatography-tandem mass spectrometry. The method was sensitive and reliable with method detection limits ranging from 4.54 to 52.9 pg/g, and most of the quantification biases and relative standard deviations were <20 and <15%, respectively. Carbazole and 1,2-benzocarbazole were the predominant substances in the sediments (median 565 and 369 pg/g, respectively) followed by 3,6-dichlorocarbazole (median 196 pg/g). The detection frequencies of carbazole, benzo-, 3-chloro-, and 3,6-dichlorocarbazole were >75%, while those of 3,6-dibromo-, 1-bromo-3,6-dichloro-, and 1,8-dibromo-3,6-dichlorocarbazole were approximately 50%. Brominated carbazoles occurred more frequently in marine than river-influenced sediments, which could indicate halogenation after discharge into the river. This is the first study regarding these substances in coastal environments without apparent contamination history. The ubiquity and bioaccumulative potential of these substances needs to be considered. PMID:26919804

  20. Chernobyl {sup 137}Cs used to determine sediment accretion rates at selected northern European coastal wetlands

    SciTech Connect

    Callaway, J.C.; DeLaune, R.D.; Patrick, W.H. Jr.

    1996-05-01

    Sediment cores were collected form five coastal wetlands along the North Sea (England and Netherlands) and Baltic Sea (Poland). {sup 137}Cs dating was used to assess sediment accretion rates, including rates based on the {sup 137}Cs peak from the 1986 accident at Chernobyl. Peaks form the Chernobyl fallout were found in cores from the Oder and Vistula Rivers in Poland, from the Eastern Scheldt in the Netherlands, and in one of the two cores from Stiffkey Marsh, UK. No evidence of Chernobyl fallout was found in cores from Dengie Marsh, UK. The Chernobyl {sup 137}Cs peak serves as an excellent marker for short-term accretion rates because of its high activity. Vertical accretion rates (cm yr{sup {minus}1}) based on 1963 and 1986 peaks were similar at most sites; differences may be due to large inputs of sediment from storms or recent accumulation of organic matter. Large differences in sediment characteristics and accretion rates were found between samples from Poland and western Europe. Vertical accretion rates over the period 1963-1986 ranged from 0.26 to 0.85 cm{sup {minus}1} and from 0.30 to 1.90 cm yr{sup {minus}1} over the 1986-1991 period. Vertical accretion rates for the period these sites are in imminent danger of excessive flooding. The Chernobyl {sup 137}Cs peak will be especially useful for studies of short-term (i.e. very recent) sedimentation in the near future and for comparisons of sediment processes over different time scales. 33 refs., 4 figs., 4 tabs.

  1. The Influence of Coastal Wetland Zonation on Surface Sediment and Porewater Mercury Speciation

    NASA Astrophysics Data System (ADS)

    Marvin-DiPasquale, M. C.; Windham-Myers, L.; Wilson, A. M.; Buck, T.; Smith, E.

    2014-12-01

    An investigation of mercury (Hg) speciation in saltmarsh surface sediment (top 0-2 cm) and porewater (integrated 0-50 cm) was conducted along two monitoring well transects established within North Inlet Estuary (S. Carolina, USA) as part of the NOAA sponsored National Estuarine Research Reserve (NERR) network. Transects were perpendicular to the shoreline, from the forested uplands to the edge of the tidal channel, and traversed a range of vegetated zones from the high marsh (pickleweed, rush, and salt panne-dominated) to the low marsh (cordgrass dominated), as mediated by elevation and tidal inundation. Sediment grain size and organic content explained 95% of the variability in the distribution of total Hg (THg) in surface sediment. Tin-reducible 'reactive' mercury (HgR) concentration was 10X greater in the high marsh, compared to the low marsh, and increased sharply with decreasing sediment pH values below pH=6. The percentage of THg as HgR decreased as sediment redox conditions became more reducing. There were no significant differences in surface sediment methylmercury (MeHg) concentrations between high and low marsh zones. In contrast, porewater MeHg concentrations were 5X greater in the high marsh compared to the low marsh. As a percentage of THg, mean porewater %MeHg was 23% in the low marsh and 51% in the high marsh, reaching levels of 73-89% in a number of high marsh sites. Calculations of partitioning between porewater and the solid phase suggest stronger binding to particles in the low marsh and a shift towards the dissolved phase in the high marsh for both THg and MeHg. These results are consistent with a conceptual model for coastal wetlands where the less frequently inundated high marsh zone may be important in terms of MeHg production and enhanced subsurface mobilization, partially due to the subsurface mixing of saline estuarine water and freshwater draining in from the uplands area.

  2. An algorithm for the retrieval of suspended sediment in coastal waters of China from AVHRR data

    NASA Astrophysics Data System (ADS)

    Li, Yan; Huang, Wei; Fang, Ming

    1998-04-01

    An algorithm using an analytical model based on the difference of the NOAA/AVHRR (Advanced Very High Resolution Radiometer) Channel 1 (580-680 nm) and Channel 2 (720-1100 nm) reflectance data is developed for the retrieval of suspended sediment in coastal and shelf waters. The model assumes that the suspended sediment concentration, S, is a function of the difference of the water leaving reflectance of Channels 1 and 2, Rd. The formula is governed by the optical parameters of water and suspended sediment, including volume scattering and absorption coefficients of the two channels. The analytical model yielded a best fit curve when the water leaving reflectance of the two channels were plotted against each other for Case 2 water, where the suspended sediment concentration ranged from 5 to over 100 g m -3. A standard curve of S against Rd was obtained. Using Tassan (1994)'s recommendations for the contribution of water and suspended sediment to the in-water absorption and backscattering coefficients in his three-component color model, the suspended sediment concentration corresponding to the maximum point of Rd was about 60 g m -3, and was independent of the atmospheric optical properties. Thus, this process provides a convenient tool to remove the atmospheric fluctuations of atmospheric transmittance by reconciling the maximum point of the image with the standard curve. The algorithm was tested using data from seven transects in the China Sea, and the retrieved results for the Zhujiang (Pearl River) Estuary were compared with the sea-truth data with good agreement. This suggests that the algorithm can be used as a seasonal regional model for water masses along the China coast.

  3. Trace element fluxes in sediments of an environmentally impacted river from a coastal zone of Brazil.

    PubMed

    da Silva, Yuri Jacques Agra Bezerra; Cantalice, José Ramon Barros; Singh, Vijay P; do Nascimento, Clístenes Williams Araújo; Piscoya, Victor Casimiro; Guerra, Sérgio M S

    2015-10-01

    Data regarding trace element concentrations and fluxes in suspended sediments and bedload are scarce. To fill this gap and meet the international need to include polluted rivers in future world estimation of trace element fluxes, this study aimed to determine the trace element fluxes in suspended sediment and bedload of an environmentally impacted river in Brazil. Water, suspended sediment, and bedload from both the upstream and the downstream cross sections were collected. To collect both the suspended sediment and water samples, we used the US DH-48. Bedload measurements were carried out using the US BLH 84 sampler. Concentrations of Cd, Cr, Cu, Fe, Mn, Ni, Pb, and Zn were determined by inductively coupled plasma (ICP-OES). As and Hg were determined by an atomic absorption spectrophotometer (AA-FIAS). The suspended sediments contributed more than 99 % of the trace element flux. By far Pb and to a less extent Zn at the downstream site represents major concerns. The yields of Pb and Zn in suspended sediments were 4.20 and 2.93 kg km(2) year(-1), respectively. These yields were higher than the values reported for Pb and Zn for Tuul River (highly impacted by mining activities), 1.60 and 1.30 kg km(2) year(-1), respectively, as well as the Pb yield (suspended + dissolved) to the sea of some Mediterranean rivers equal to 3.4 kg km(2) year(-1). Therefore, the highest flux and yield of Pb and Zn in Ipojuca River highlighted the importance to include medium and small rivers-often overlooked in global and regional studies-in the future estimation of world trace element fluxes in order to protect estuaries and coastal zones. PMID:25989857

  4. Temporal variations of mineral character of acid-producing pyritic coastal sediments, Southeast Queensland, Australia.

    PubMed

    Preda, Micaela; Cox, Malcolm E

    2004-06-29

    The lower Pimpama River catchment possesses many features of morphology, geology and landuse, typical for Southeast Queensland. Pimpama River and its main tributary Hotham Creek meander over a coastal plain which developed during the last several thousand years as a result of sea level fluctuations and changing fluvial and estuarine regimes which provided ideal conditions for the formation of sedimentary pyrite. A complex mixture of natural and human factors triggers and controls the oxidation and hydrolysis of this pyrite. The consequent production of sulfuric acid and leaching of metals from the pyrite-rich sediments represent main environmental issues of this coastal setting. This study aimed to determine the lithological character of the coastal unconsolidated sediments, and identify changes produced by acidity over a long period of time in a natural system and over a short period of time in a laboratory system. The mineral composition of the estuarine sediments of the coastal plain reflects the lithology of their source, the geological basement, and also the enhanced weathering rate due to acid production. The primary minerals present in the sediments consist of quartz and feldspars (primarily albite, K-feldspars to a lesser extent and minor anorthite) the product of physical weathering of bedrock material, mainly sandstone. Kaolinite is the dominant clay mineral and represents the product of intense leaching of feldspars promoted by acid conditions. Kaolinite is fairly ordered in structure in fresh and weathered bedrock and it becomes disordered in the estuarine sediments. Illite is mainly present in bedrock-related samples and the highest amounts are associated with muscovite. In the tidal sediments, illite is present to a lesser extent and is not found in the lower estuary. The distribution of mixed layers of smectite-illite is highly variable and their deposition is mainly controlled by the hydrodynamic conditions of the environment. Only low energy tidal

  5. The Successful Deployment of a New Sub-Seafloor Observatory

    NASA Astrophysics Data System (ADS)

    Lado Insua, T.; Moran, K.; Kulin, I.; Farrington, S.; Newman, J. B.; Riedel, M.; Iturrino, G. J.; Masterson, W. A.; Furman, C. R.; Klaus, A.; Storms, M.; Attryde, J.; Hetmaniak, C.; Huey, D.

    2013-12-01

    The Simple Cabled Instrument for Measuring Parameters In-Situ (SCIMPI) is a new ocean observatory instrument designed to study dynamic processes in the sub-seafloor. The first SCIMPI prototype comprises nine modules that collect time series measurements of temperature, pressure and electrical resistivity of sediments at pre-selected depths below seafloor. These modules are joined in an array by flexible cables. Floats are attached to the cables of the system to keep the cabling taught against the weight of a sinker bar at the bottom of the string. The system was designed for deployment through drillpipe using D/V JOIDES Resolution. SCIMPI is designed for sediments that will collapse around the observatory after deployment. After five years in development, SCIMPI was successfully deployed within the NEPTUNE Canada observatory in May 2013. The IODP Expedition 341S took place on the Cascadia Margin. The deployment Site U1416 is within an active gas hydrate vent field. Spacing of SCIMPI modules was tailored to measure parameters in the accreted sediment and above and below the Bottom Simulating Reflector (BSR). The location of the modules was dimensioned based on a multivariate analysis of physical properties derived from IODP boreholes located nearby. Members of the SCIMPI team, science party, technical support, crew and participants of the School of Rock assembled the instrument on deck during the days leading up to the deployment. During deployment, SCIMPI was connected to the Multi-Function-Telemetry-Module (from LDEO) and was lowered through drillpipe on the wireline logging cable. SCIMPI communicated data to a shipboard computer until its release, providing assurance that measurements were active on all sensors. The observatory was released with the Electronic Release System (ERS) and the drillpipe was pulled out of the borehole. A camera system was used to check on the installation immediately after deployment. An Ocean Networks Canada expedition revisited the

  6. Contrasting landscape influences on sediment supply and stream restoration priorities in northern Fennoscandia (Sweden and Finland) and coastal British Columbia.

    PubMed

    Rosenfeld, Jordan; Hogan, Daniel; Palm, Daniel; Lundquist, Hans; Nilsson, Christer; Beechie, Timothy J

    2011-01-01

    Sediment size and supply exert a dominant control on channel structure. We review the role of sediment supply in channel structure, and how regional differences in sediment supply and land use affect stream restoration priorities. We show how stream restoration goals are best understood within a common fluvial geomorphology framework defined by sediment supply, storage, and transport. Land-use impacts in geologically young landscapes with high sediment yields (e.g., coastal British Columbia) typically result in loss of in-stream wood and accelerated sediment inputs from bank erosion, logging roads, hillslopes and gullies. In contrast, northern Sweden and Finland are landscapes with naturally low sediment yields caused by low relief, resistant bedrock, and abundant mainstem lakes that act as sediment traps. Land-use impacts involved extensive channel narrowing, removal of obstructions, and bank armouring with boulders to facilitate timber floating, thereby reducing sediment supply from bank erosion while increasing export through higher channel velocities. These contrasting land-use impacts have pushed stream channels in opposite directions (aggradation versus degradation) within a phase-space defined by sediment transport and supply. Restoration in coastal British Columbia has focused on reducing sediment supply (through bank and hillslope stabilization) and restoring wood inputs. In contrast, restoration in northern Fennoscandia (Sweden and Finland) has focused on channel widening and removal of bank-armouring boulders to increase sediment supply and retention. These contrasting restoration priorities illustrate the consequences of divergent regional land-use impacts on sediment supply, and the utility of planning restoration activities within a mechanistic sediment supply-transport framework. PMID:21132293

  7. PCDD/Fs in sediments of Central Vietnam coastal lagoons: in search of TCDD.

    PubMed

    Piazza, Rossano; Giuliani, Silvia; Bellucci, Luca Giorgio; Mugnai, Cristian; Cu, Nguyen Huu; Nhon, Dang Hoai; Vecchiato, Marco; Romano, Stefania; Frignani, Mauro

    2010-12-01

    Samples from nine Central Vietnam coastal lagoons, together with three soils and sediments collected in two freshwater reservoirs of the Thua Thien-Hué province, were analysed for polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs). Total concentrations are low, from 192 to 2912 pg g(-1) and depth profiles in Tam Giang-Cau Hai (TG-CH) sediment cores show only minor changes over time in PCDD/F input and composition. Octachloro dibenzo-p-dioxin (OCDD) is the prevailing congener (approximately 90%), indicating combustion as the main PCDD/F source to these coastal systems, whereas natural formation might be partly responsible for the presence at depth. 2,3,7,8-Tetrachloro dibenzo-p-dioxin (TCDD), largely sprayed together with Agent Orange over the study areas during the war (1961-1971), is absent or very low. This result supports the hypothesis of strong degradation soon after spraying. Multivariate statistical analyses account for the presence of local, short-range sources as observed in the northern part of the TG-CH lagoon. PMID:20952038

  8. Renewed soil erosion and remobilisation of radioactive sediment in Fukushima coastal rivers after the 2013 typhoons

    PubMed Central

    Evrard, Olivier; Chartin, Caroline; Onda, Yuichi; Lepage, Hugo; Cerdan, Olivier; Lefèvre, Irène; Ayrault, Sophie

    2014-01-01

    Summer typhoons and spring snowmelt led to the riverine spread of continental Fukushima fallout to the coastal plains of Northeastern Japan and the Pacific Ocean. Four fieldwork campaigns based on measurement of radioactive dose rates in fine riverine sediment that has recently deposited on channel bed-sand were conducted between November 2011 and May 2013 to document the spread of fallout by rivers. After a progressive decrease in the fresh riverine sediment doses rates between 2011 and early spring in 2013, a fifth campaign conducted in November 2013 showed that they started to increase again after the occurrence of violent typhoons. We show that this increase in dose rates was mostly due to remobilization of contaminated material that was temporarily stored in river channels or, more importantly, in dam reservoirs of the region during the typhoons. In addition, supply of particles from freshly eroded soils in autumn 2013 was the most important in areas where decontamination works are under progress. Our results underline the need to monitor the impact of decontamination works and dam releases in the region, as they may provide a continuous source of radioactive contamination to the coastal plains and the Pacific Ocean during the coming years. PMID:24694549

  9. Cellular content of biomolecules in sub-seafloor microbial communities

    NASA Astrophysics Data System (ADS)

    Braun, Stefan; Morono, Yuki; Becker, Kevin W.; Hinrichs, Kai-Uwe; Kjeldsen, Kasper U.; Jørgensen, Bo B.; Lomstein, Bente Aa.

    2016-09-01

    Microbial biomolecules, typically from the cell envelope, can provide crucial information about distribution, activity, and adaptations of sub-seafloor microbial communities. However, when cells die these molecules can be preserved in the sediment on timescales that are likely longer than the lifetime of their microbial sources. Here we provide for the first time measurements of the cellular content of biomolecules in sedimentary microbial cells. We separated intact cells from sediment matrices in samples from surficial, deeply buried, organic-rich, and organic-lean marine sediments by density centrifugation. Amino acids, amino sugars, muramic acid, and intact polar lipids were analyzed in both whole sediment and cell extract, and cell separation was optimized and evaluated in terms of purity, separation efficiency, taxonomic resemblance, and compatibility to high-performance liquid chromatography and mass spectrometry for biomolecule analyses. Because cell extracts from density centrifugation still contained considerable amounts of detrital particles and non-cellular biomolecules, we further purified cells from two samples by fluorescence-activated cell sorting (FACS). Cells from these highly purified cell extracts had an average content of amino acids and lipids of 23-28 fg cell-1 and 2.3 fg cell-1, respectively, with an estimated carbon content of 19-24 fg cell-1. In the sediment, the amount of biomolecules associated with vegetative cells was up to 70-fold lower than the total biomolecule content. We find that the cellular content of biomolecules in the marine subsurface is up to four times lower than previous estimates. Our approach will facilitate and improve the use of biomolecules as proxies for microbial abundance in environmental samples and ultimately provide better global estimates of microbial biomass.

  10. Changes of freshwater-lens thickness in basaltic island aquifers overlain by thick coastal sediments

    USGS Publications Warehouse

    Rotzoll, Kolja; Oki, Delwyn S.; El-Kadi, Aly I.

    2010-01-01

    Freshwater-lens thickness and long-term changes in freshwater volume in coastal aquifers are commonly assessed through repeated measurement of salinity profiles from monitor wells that penetrate into underlying salt water. In Hawaii, the thickest measured freshwater lens is currently 262 m in dike-free, volcanic-rock aquifers that are overlain by thick coastal sediments. The midpoint depth (depth where salinity is 50% salt water) between freshwater and salt water can serve as an indicator for freshwater thickness. Most measured midpoints have risen over the past 40 years, indicating a shrinking lens. The mean rate of rise of the midpoint from 1999–2009 varied locally, with faster rates in highly developed areas (1.0 m/year) and slower rates in less developed areas (0.5 m/year). The thinning of the freshwater lenses is the result of long-term groundwater withdrawal and reduced recharge. Freshwater/salt-water interface locations predicted from measured water levels and the Ghyben-Herzberg principle may be deeper than measured midpoints during some periods and shallower during other periods, although depths may differ up to 100 m in some cases. Moreover, changes in the midpoint are slower than changes in water level. Thus, water levels may not be a reliable indicator of the amount of freshwater in a coastal aquifer.

  11. Biogeochemical Insights into B-Vitamins in the Coastal Marine Sediments of San Pedro Basin, CA

    NASA Astrophysics Data System (ADS)

    Monteverde, D.; Berelson, W.; Baronas, J. J.; Sanudo-Wilhelmy, S. A.

    2015-12-01

    Coastal marine sediments support a high abundance of mircoorganisms which play key roles in the cycling of nutrients, trace metals, and carbon, yet little is known about many of the cofactors essential for their growth, such as the B-vitamins. The suite of B-vitamins (B1, B2, B6, B7, B12) are essential across all domains of life for both primary and secondary metabolism. Therefore, studying sediment concentrations of B-vitamins can provide a biochemical link between microbial processes and sediment geochemistry. Here we present B-vitamin pore water concentrations from suboxic sediment cores collected in September 2014 from San Pedro Basin, a silled, low oxygen, ~900 m deep coastal basin in the California Borderlands. We compare the B-vitamin concentrations (measured via LCMS) to a set of geochemical profiles including dissolved Fe (65-160 μM), dissolved Mn (30-300 nM), TCO2, solid phase organic carbon, and δ13C. Our results show high concentrations (0.8-3nM) of biotin (B7), commonly used for CO2 fixation as a cofactor in carboxylase enzymes. Thiamin (B1) concentrations were elevated (20-700nM), consistent with previous pore water measurements showing sediments could be a source of B1 to the ocean. Cobalamin (B12), a cofactor required for methyl transfers in methanogens, was also detected in pore waters (~4-40pM). The flavins (riboflavin [B2] and flavin mononucleotide[FMN]), molecules utilized in external electron transfer, showed a distinct increase with depth (10-90nM). Interestingly, the flavin profiles showed an inverse trend to dissolved Fe (Fe decreases with depth) providing a potential link to culture experiments which have shown extracellular flavin release to be a common trait in some metal reducers. As some of the first B-vitamin measurements made in marine sediments, these results illustrate the complex interaction between the microbial community and surrounding geochemical environment and provide exciting avenues for future research.

  12. The effects of sea-level rise on water quality in coastal floodplain sediments

    NASA Astrophysics Data System (ADS)

    Wong, Vanessa; Johnston, Scott; Burton, Edward; Bush, Richard; Sullivan, Leigh; Slavich, Peter

    2013-04-01

    Sea level has risen approximately 1.2 mm/year over the last 100 years (Hennessy et al. 2004) and is predicted to rise up to 80 cm by 2100 relative to 1990 sea levels (IPCC 2007). The number of extreme events related to sea level such as higher sea levels and increased inter-annual variability have also increased in frequency in the same time period (Hennessy et al. 2004). Globally, large areas of coastal and estuarine floodplains are underlain by sulfidic sediments and acid sulfate soils (ASS). These sediments frequently contain high concentrations of acidity and trace metals. A significant portion of the stored acidity occurs in the form of exchangeable and hydrolysable acidic metal cations such as Al and Fe. Watertables in these environments are often close to the surface and intercepted by relatively shallow drains. Due to their low elevation and locations, these floodplains are highly susceptible to pulses of saline water caused by saltwater intrusion, storm surge and rising sea levels. Construction of extensive drainage systems has further increased the susceptibility of the floodplain to seawater inundation by increasing connectivity to the estuarine channel. This risk is likely to increase in the future with predicted increases in sea level and extreme events due to climate change. This study uses both batch experiments to determine the effects of increasing ionic strength on exchange processes and trace metal desorption in oxidised floodplain sediments and sulfidic drain sediments, and intact soil cores to determine the surface water-porewater interactions over the short term following seawater inundation in coastal floodplain sediments. We found that that saline inundation of oxidised ASS floodplain sediments, even by relatively brackish water may cause rapid, shorter-term water quality changes and a pulse release of acidity due to desorption of acidic metal cations (Wong et al. 2010). We also found that trace metals can be mobilised from sulfidic

  13. Cyclic 100-ka (glacial-interglacial) migration of subseafloor redox zonation on the Peruvian shelf

    PubMed Central

    Contreras, Sergio; Meister, Patrick; Liu, Bo; Prieto-Mollar, Xavier; Hinrichs, Kai-Uwe; Khalili, Arzhang; Ferdelman, Timothy G.; Kuypers, Marcel M. M.; Jørgensen, Bo Barker

    2013-01-01

    The coupling of subseafloor microbial life to oceanographic and atmospheric conditions is poorly understood. We examined diagenetic imprints and lipid biomarkers of past subseafloor microbial activity to evaluate its response to glacial-interglacial cycles in a sedimentary section drilled on the Peruvian shelf (Ocean Drilling Program Leg 201, Site 1229). Multiple and distinct layers of diagenetic barite and dolomite, i.e., minerals that typically form at the sulfate−methane transition (SMT), occur at much shallower burial depth than the present SMT around 30 meters below seafloor. These shallow layers co-occur with peaks of 13C-depleted archaeol, a molecular fossil of anaerobic methane-oxidizing Archaea. Present-day, non-steady state distributions of dissolved sulfate also suggest that the SMT is highly sensitive to variations in organic carbon flux to the surface shelf sediments that may lead to shoaling of the SMT. Reaction-transport modeling substantiates our hypothesis that shallow SMTs occur in response to cyclic sediment deposition with a high organic carbon flux during interglacials and a low organic carbon flux during glacial stages. Long diffusion distances expectedly dampen the response of deeply buried microbial communities to changes in sediment deposition and other oceanographic drivers over relatively short geological time scales, e.g., glacial-interglacial periods. However, our study demonstrates how dynamically sediment biogeochemistry of the Peru Margin has responded to glacial-interglacial change and how these changes are now preserved in the geological record. Such changes in subsurface biogeochemical zonation need to be taken into account to assess the role of the subseafloor biosphere in global element and redox cycling. PMID:24145422

  14. Hydrologic controls on coastal suspended sediment plumes around the Greenland Ice Sheet

    NASA Astrophysics Data System (ADS)

    Chu, V. W.; Smith, L. C.; Rennermalm, A. K.; Forster, R. R.; Box, J. E.

    2011-12-01

    Increasing surface melting on the Greenland ice sheet and rising sea level have furthered the need for direct observations of meltwater release from the ice sheet to ocean. Buoyant sediment plumes develop in fjords downstream of outlet glaciers and are controlled by a variety of complex factors, including ice sheet meltwater runoff and fluvial processes. This study classifies average plume suspended sediment concentrations (SSC) around the Greenland ice sheet derived from Moderate Resolution Imaging Spectroradiometer (MODIS) satellite imagery and field data over the period 2000-2009. Spatial and temporal variations in SSC are compared with ice sheet positive-degree-days (PDD), a proxy for ice sheet surface melting, as modeled from the Polar MM5 regional climate model, and outlet glacier environment, as represented by land- or marine-terminating glaciers. Buoyant plume SSCs are successfully retrieved around most of Greenland. Higher ice sheet melting around Greenland produces higher SSCs in surrounding coastal waters. The southwest region, dominated by land-terminating glaciers, experiences highest PDDs and produces plumes with highest SSCs, which typically persist late into the meltwater runoff season. Interannual variations in ice sheet PDD and plume SSC are not coupled as previously demonstrated in Kangerlussuaq Fjord (Chu et al. 2009), suggesting plume dimensions better capture interannual runoff dynamics than SSC. This first exploration of coastal sediment plumes around Greenland demonstrates that while complex factors influence their development and detection, ice sheet hydrology is a dominant control on plume distribution. Satellite remote sensing thus offers a unique methodology for detecting meltwater release from the ice sheet to global ocean.

  15. Numerical model on the material circulation for coastal sediment in Ago Bay, Japan

    NASA Astrophysics Data System (ADS)

    Anggara Kasih, G. A.; Chiba, Satoshi; Yamagata, Youichi; Shimizu, Yasuhiro; Haraguchi, Koichi

    2009-04-01

    In this paper, we study the sediment in Ago Bay from the aspects of the biogeochemical cycle and the mass transport by means of a numerical model. We developed the model by adopting the basic idea of Berg et al. (Berg, P., Rysgaard, S., Thamdrup, B., 2003. Dynamic modeling of early diagenesis and nutrient cycling: A case study in Artic marine sediment. Am. J. Sci. 303, 905-955.), Fossing et al. [Fossing, H., Berg, P., Thamdrup, B., Rysgaard, S., Sorensen, H.M., Nielsen, K.A., 2004. Model set-up for an oxygen and nutrient flux for Aarhus Bay (Denmark). National Environmental Research Institute (NERI) Technical Report No. 483. Ministry of the Environment, Denmark, 65 pp.] and Sayama [Sayama, M., 2000. Analytical technique for the nitrogen circulation in the boundary layer of the coastal sediment. Isao Koike edited, Japan Environmental Management Association for Industry, Tokyo, pp. 51-103. (in Japanese)]. In the model, the biogeochemical processes involve five primary reactions and sixteen secondary reactions. The primary reactions describe the degradation of organic matters, and the secondary reactions describe the miscellaneous reactions such as re-oxidation of reduced species formed as a product from primary reactions, and the crystallizing process of oxidized particles. The transports process includes molecular diffusion, advection, bioturbation and bioirrigation. The model performance is verified by comparing the model predicted data to the observed data. The comparison involves data of vertical distribution of material concentrations and the material fluxes at the sediment-water interface. The comparison shows that the model can reproduce the observed vertical profile and the observed material fluxes at the sediment-water interface. The material circulation result shows that about 42% of dissolved organic matter (DOM) is mineralized by sulfate reduction, around 41% by oxygen respiration, and the remaining is mineralized by denitrification, manganese and iron

  16. Key geochemical factors regulating Mn(IV)-catalyzed anaerobic nitrification in coastal marine sediments

    NASA Astrophysics Data System (ADS)

    Lin, Hui; Taillefert, Martial

    2014-05-01

    The reduction of Mn(IV) oxides coupled to the anaerobic oxidation of NH4+ has been proposed for more than a decade to contribute to the fixed nitrogen pool in marine sediments, yet the existence of this process is still under debate. In this study, surface sediments from an intertidal salt marsh were incubated with MnO2 in the presence of elevated concentrations of NH4+ to test the hypothesis that the reduction of Mn(IV) oxides catalyzes anaerobic NH4+ oxidation to NO2- or NO3-. Geochemical factors such as the ratio of Mn(IV) to NH4+, the type of Mn(IV) oxides (amorphous or colloidal MnO2), and the redox potential of the sediment significantly affect the activity of anaerobic nitrification. Incubations show that the net production of NO3- is stimulated under anaerobic conditions with external addition of colloidal but not amorphous MnO2 and is facilitated by the presence of high concentrations of NH4+. Mass balance calculations demonstrate that anaerobic NH4+ oxidation contributes to the net consumption of NH4+, providing another piece of evidence for the occurrence of Mn(IV)-catalyzed anaerobic nitrification in coastal marine sediments. Finally, anaerobic nitrification is stimulated by the amendment of small concentrations of NO3- or the absence of sulfate reduction, suggesting that moderately reducing conditions favor anaerobic NH4+ oxidation. Overall, these findings suggest that Mn(IV)-catalyzed anaerobic nitrification in suboxic sediments with high N/Mn concentration ratios and highly reactive manganese oxides may be an important source of NO2- and NO3- for subsequent marine nitrogen loss via denitrification or anammox.

  17. Stable isotope values in coastal sediment estimate subsidence near Girdwood during the 1964 great Alaska earthquake

    NASA Astrophysics Data System (ADS)

    Bender, A. M.; Witter, R. C.; Rogers, M.; Saenger, C. P.

    2013-12-01

    values shift positively from peat into mud across subsidence contacts, we analyzed samples above and below the 1964 contact in 11 sediment cores along the same transect. Across the 1964 contact, δ13C and δ15N shifts are consistently positive (up to +4‰) from peat to mud. To assess these shifts in terms of RSL change across the 1964 contact, we regressed modern sediment isotope values against elevation (δ13C R=0.60, avg. SE=×1.01‰, δ15N R=0.77, avg. SE=×0.50‰). These regressions predict elevations, referenced to a site-specific high water datum, for sediment above and below the 1964 contact. By subtracting the average δ13C and δ15N- predicted elevations of mud from peat we estimate an average 1.5×0.7m of RSL rise across the contact on the transect. Our method estimates elevation changes across the 1964 contact at Bird Point that are consistent with the ~1.5m subsidence observed near this location. We conclude that δ13C and δ15N show considerable promise as proxies for paleoelevation in coastal sediment, and may be useful to estimate vertical displacements of the coast during earthquakes.

  18. Rare earth elements in coastal sediments of the northern Galician shelf: Influence of geological features

    NASA Astrophysics Data System (ADS)

    Prego, Ricardo; Caetano, Miguel; Bernárdez, Patricia; Brito, Pedro; Ospina-Alvarez, Natalia; Vale, Carlos

    2012-03-01

    The Northern coast of Galicia, NW Iberian Peninsula, exhibits a variety of geological features: Ortegal allochthonous complex, Ollo-de-Sapo autochthonous domain and massifs of Bares, Barqueiro and San-Ciprian. In order to examine the influence of terrestrial lithologies on coastal sediments, 103 samples were collected in the Rias of Ortigueira, Barqueiro and Viveiro, their neighbouring shelf and the estuaries of Mera, Sor and Landro rivers. Aluminium, Fe, Sc, particulate inorganic and organic carbon and rare earth elements (REE) were determined in the <2 mm fraction. In addition, calcite, muscovite, quartz and riebeckite minerals were identified and quantified in 33 selected samples. The distributions of riebeckite and Fe reflect the influence of Ortegal complex on the coastal areas around the Cape Ortegal. The highest concentrations of ΣREE were found in fine sediments from confined inner parts of the Rias (up to 233 mg kg-1), while most of the sands contained 11-70 mg kg-1. ΣREE normalised to European Shale (ES) highlights the relative abundance of lanthanides (ΣREEN>6) near Cape Ortegal and the innermost ria zones. The ratio between light and heavy REE (L/H) showed lower values (4-11) around Cape Ortegal and the shelf while higher ratios (15-23) were detected in west of the Cape Estaca-de-Bares and in the inner Viveiro Ria due to elevated contributions of La and Ce. The L/H values normalised to ES reflects the importance of HREE in the adjacent area to Ortegal Complex (LN/HN<0.8) and the LREE (LN/HN>1.4) in the inner estuaries and west Cape Estaca-de-Bares. The highest REE individual ES normalised were measured in fine-grained sediments of the Mera and Sor estuaries. Sediments from the eastern shelf of Cape Ortegal presented enhanced ratios only for HREE. These results indicate that distribution of REE in the northern Galician region is highly depending on the neighbouring lithological pattern, contrasting with the situation found in the western Galician

  19. Concentrations and annual fluxes of sediment-associated chemical constituents from conterminous US coastal rivers using bed sediment data

    USGS Publications Warehouse

    Horowitz, Arthur J.; Stephens, Verlin C.; Elrick, Kent A.; Smith, James J.

    2012-01-01

    Coastal rivers represent a significant pathway for the delivery of natural and anthropogenic sediment-associated chemical constituents to the Atlantic, Pacific and Gulf of Mexico coasts of the conterminous USA. This study entails an accounting segment using published average annual suspended sediment fluxes with published sediment-associated chemical constituent concentrations for (1) baseline, (2) land-use distributions, (3) population density, and (4) worldwide means to estimate concentrations/annual fluxes for trace/major elements and total phosphorus, total organic and inorganic carbon, total nitrogen, and sulphur, for 131 coastal river basins. In addition, it entails a sampling and subsequent chemical analysis segment that provides a level of ‘ground truth’ for the calculated values, as well as generating baselines for sediment-associated concentrations/fluxes against which future changes can be evaluated. Currently, between 260 and 270 Mt of suspended sediment are discharged annually from the conterminous USA; about 69% is discharged from Gulf rivers (n = 36), about 24% from Pacific rivers (n = 42), and about 7% from Atlantic rivers (n = 54). Elevated sediment-associated chemical concentrations relative to baseline levels occur in the reverse order of sediment discharges:Atlantic rivers (49%)>Pacific rivers (40%)>Gulf rivers (23%). Elevated trace element concentrations (e.g. Cu, Hg, Pb, Zn) frequently occur in association with present/former industrial areas and/or urban centres, particularly along the northeast Atlantic coast. Elevated carbon and nutrient concentrations occur along both the Atlantic and Gulf coasts but are dominated by rivers in the urban northeast and by southeastern and Gulf coast (Florida) ‘blackwater’ streams. Elevated Ca, Mg, K, and Na distributions tend to reflect local petrology, whereas elevated Ti, S, Fe, and Al concentrations are ubiquitous, possibly because they have substantial natural as well as anthropogenic sources

  20. Methane and sulfate dynamics in sediments from mangrove-dominated tropical coastal lagoons, Yucatán, Mexico

    NASA Astrophysics Data System (ADS)

    Chuang, P.-C.; Young, M. B.; Miller, L. G.; Herrera-Silveira, J. A.; Paytan, A.

    2015-11-01

    Methane, sulfate and chloride concentrations in sediment porewater from two coastal mangrove ecosystems (Celestún and Chelem Lagoons) on the Yucatán Peninsula, Mexico were measured. In these sediments methane exists in shallow sediments where sulfate is not depleted, and sulfate reduction is actively occurring. A transport-reaction model depicting the various production and consumption processes for methane and sulfate is used to elucidate processes responsible for this observation. The model illustrates that methane in the upper sediments is produced in-situ supported by high dissolved organic matter as well as by non-competitive substrates. In addition methane is contributed to porewater in the upper sediments, where sulfate reduction occurs, by transport from deeper zones within the sedimentary column through bubbles dissolution and diffusion. The shallow methane production and accumulation depths in these sediments promote high methane fluxes to the water column and atmosphere.

  1. Distribution, source identification, and historical trends of organic micropollutants in coastal sediment in Jakarta Bay, Indonesia.

    PubMed

    Rinawati; Koike, Tatsuya; Koike, Hiroaki; Kurumisawa, Rina; Ito, Maki; Sakurai, Shigeaki; Togo, Ayako; Saha, Mahua; Arifin, Zainal; Takada, Hideshige

    2012-05-30

    We determined concentrations of polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), linear alkylbenzenes (LABs), and hopanes in coastal sediments collected from Jakarta Bay and Tokyo Bay. PAH concentrations in sediments from Jakarta Bay (257-1511 ng/g-dry) were lower than or comparable to those from Tokyo Bay (1372-1615 ng/g-dry). Ratios of alkyl-PAHs to parent PAHs showed a greater contribution of petrogenic inputs in Jakarta Bay than in Tokyo Bay. This difference is consistent with the higher ratio of hopanes to PAHs in Jakarta Bay. LAB concentrations in Jakarta Bay (geometric mean, 1400 ng/g-dry) were higher than those in Tokyo Bay (661 ng/g-dry). The internal to external (I/E) ratios of LABs in Jakarta Bay (0.92-2.88) were lower than those in Tokyo Bay (2.8-4.8), indicating that Jakarta Bay receives untreated or poorly treated sewage. Significant amounts of tetrapropylene-based alkylbenzenes were detected in several locations in Jakarta Bay, suggesting current usage of the non-degradable surfactants alkylbenzene sulfonates that are banned in many countries. The PCB concentration in Jakarta Bay was 1 order of magnitude lower than in Tokyo Bay, suggesting minimal usage of PCBs in industrial or commercial products in Jakarta. Analyses of a sediment core indicate increasing inputs of PAHs, hopanes, and LABs into Jakarta Bay during recent decades. PMID:22480710

  2. Assessment of heavy metal contamination in surface sediments of the west Guangdong coastal region, China.

    PubMed

    Zhao, Guangming; Lu, Qingyuan; Ye, Siyuan; Yuan, Hongming; Ding, Xigui; Wang, Jin

    2016-07-15

    Heavy metals (As, Cd, Cr, Cu, Hg, Pb, Zn), organic carbon and grain size of 237 surface sediment samples and one sediment core, taken from the west Guangdong coastal region in January 2008, were analyzed to evaluate the spatial distribution and pollution status. Results show that the ranges of the measured heavy metal concentrations in sediments are as follows: 8.33-39.49mg/kg for As, 0.1-1.49mg/kg for Cd, 33-108mg/kg for Cr, 11.5-78.8mg/kg for Cu, 0.04-0.26mg/kg for Hg, 21-73mg/kg for Pb, 56-248mg/kg for Zn. The heavy metal enrichment is closely associated with Corg and grain size. Both the metal enrichment factor and geoaccumulation index indicate that there was no detected pollution on metals As, Cr, Cu, Pb in our study area and a slight to moderate contamination of Cd, Hg and Zn. However, As, Cr and Cu have showed a certain risk. PMID:27197765

  3. Sedimentation in Pacific Northwest Coastal Streams -- Evidence from Regional Surveys of Bed Substrate Size and Stability

    NASA Astrophysics Data System (ADS)

    Kaufmann, P. R.; Faustini, J. M.; Larsen, D. P.

    2003-12-01

    We examined evidence of anthropogenic sedimentation in Oregon and Washington coastal streams using relatively rapid measurements taken from surveys during summer low flows (probability sample, n= 104 reaches). We inferred bankfull channel dimensions from evidence at low flow and compared bed substrate geometric mean diameter (Dgm) with critical diameter (D*cbf) calculated from estimated bed shear stress at bankfull flow stage. We derived an index of Relative Bed Stability, RBS* = Dgm / D*cbf, based on a modified Shield's criterion for incipient motion that includes adjustments to bed shear stress for energy dissipated by large wood and channel irregularities. D*cbf averaged 56 percent of unadjusted values, and Dgm ranged from silt to boulder size. Log10[RBS*] in streams relatively undisturbed by humans was generally between -0.7 and +0.5, showing approximate balance between observed and mobile substrates, but declined to low values (-1.5 to -3.0) in streams with substantial riparian and basin disturbances. Streams draining soft sedimentary lithology showed greater apparent response to these disturbances than did those draining hard basalt lithology. The association of low RBS* with land disturbance, and the stronger absolute values of correlation of Dgm (negative) than D*cbf (zero or positive) with land disturbance in this region strongly suggest that activities including road building, land-clearing, logging and agriculture have augmented sediment supplies and increased fine sediments in stream beds.

  4. Cable Bacteria Control Iron-Phosphorus Dynamics in Sediments of a Coastal Hypoxic Basin.

    PubMed

    Sulu-Gambari, Fatimah; Seitaj, Dorina; Meysman, Filip J R; Schauer, Regina; Polerecky, Lubos; Slomp, Caroline P

    2016-02-01

    Phosphorus is an essential nutrient for life. The release of phosphorus from sediments is critical in sustaining phytoplankton growth in many aquatic systems and is pivotal to eutrophication and the development of bottom water hypoxia. Conventionally, sediment phosphorus release is thought to be controlled by changes in iron oxide reduction driven by variations in external environmental factors, such as organic matter input and bottom water oxygen. Here, we show that internal shifts in microbial communities, and specifically the population dynamics of cable bacteria, can also induce strong seasonality in sedimentary iron-phosphorus dynamics. Field observations in a seasonally hypoxic coastal basin demonstrate that the long-range electrogenic metabolism of cable bacteria leads to a dissolution of iron sulfides in winter and spring. Subsequent oxidation of the mobilized ferrous iron with manganese oxides results in a large stock of iron-oxide-bound phosphorus below the oxic zone. In summer, when bottom water hypoxia develops and cable bacteria are undetectable, the phosphorus associated with these iron oxides is released, strongly increasing phosphorus availability in the water column. Future research should elucidate whether formation of iron-oxide-bound phosphorus driven by cable bacteria, as observed in this study, contributes to the seasonality in iron-phosphorus cycling in aquatic sediments worldwide. PMID:26720721

  5. Impact of Human Activities on the Flux of Terrestrial Sediments to the Coastal Ocean Offshore Northeastern Taiwan

    NASA Astrophysics Data System (ADS)

    Chen, Tzu-Ting; Su, Chih-Chieh; Liu, Char-Shine; Huang, Chen-fen; Hsu, Ho-Han

    2016-04-01

    Land to ocean material fluxes play an important role in global biogeochemical cycles. Changes in sediment supply not only greatly influence the benthic environment of coastal estuaries but also might threaten human lives and properties. Artificial constructions, such as roads and reservoirs, could affect natural environments and change sediment discharges. Due to its high precipitation, steep slopes, small basin areas, and frequent flood events, Taiwan is characterized with rapid erosion rates and extremely high sediment yields. In northeastern Taiwan, the high mean annual precipitation lead to large amounts of sediments being delivered into the ocean through the Lanyang River. Since 1957, the road constructions along the Lanyang River greatly increased terrestrial sediment flux to the coastal ocean. However, its influence on offshore area is not yet clear. In this study, we combine geochemical and geophysical data to evaluate the modern sedimentation history and discuss the impact of human activities on the Ilan Shelf. The preliminary results of grain size and 210Pb analyses from five sediment cores taken from the upper South Guishan Channel indicate the existence of local differences on hydrodynamic conditions. In addition, we also applied similarity index which based on a quantitative analysis algorithm to the chirp sonar data on echo character classification and calculated continuous grain size variations of the seafloor surface sediments. By combining all geochemical and geophysical data, we may reconstruct the holistic picture of human impacts on offshore environment from sedimentology records.

  6. Artificially induced migration of redox layers in a coastal sediment from the Northern Adriatic

    NASA Astrophysics Data System (ADS)

    Metzger, E.; Langlet, D.; Viollier, E.; Koron, N.; Riedel, B.; Stachowitsch, M.; Faganeli, J.; Tharaud, M.; Geslin, E.; Jorissen, F.

    2014-04-01

    Long-term experimental studies suggest that, under transient anoxic conditions, redox fronts within the sediment shift upwards, causing sequential rise and fall of benthic fluxes of reduced species (Mn(II), Fe(II) and S(-II)). Infaunal benthic organisms are associated with different redox fronts as micro-habitats and must be affected by such changes during natural hypoxia events. In order to document the geochemical evolution of the sediment during prolonged anoxia in the framework of an in situ experiment designed to mimic natural conditions, benthic chambers were deployed on the seafloor of the Northern Adriatic and sampled after 9, 30 and 315 days of incubation. Oxygen and sulfide were measured continuously in the early stages (9 days) of the experiment. High-resolution pore water profiles were sampled by DET probes and redox-sensitive species (S(VI), Mn(II) and Fe(II)) and alkalinity were measured. Starting oxygen saturation was about 80% within the chamber. After 7 days, anoxia was established in the bottom waters within the chambers. Mn(II) and Fe(II) started diffusing towards the anoxic water column until they reached the surficial sediment. Being reoxidized there, Mn and Fe reprecipitated, giving a rusty coloration to the seafloor. Infaunal species appeared at the sediment surface. After 20 days, all macro-organisms were dead. Decomposition of macro-organisms at the sediment-water interface generated S(-II) within the entire height of the chamber, leading to a downward flux of sulfides into the sediment, where they were quickly oxidized by metallic oxides or precipitated as FeS. S(-II) was below detection in the water column and pore waters at the end of the experiment. Our results suggest that S(-II) enrichment in the water column of coastal systems, which are episodically anoxic, is strongly controlled by the biomass of benthic macrofauna and its decay during anoxia, whereas its residence time in the water column is controlled by iron availability (as

  7. Factors controlling the silicon isotope distribution in waters and surface sediments of the Peruvian coastal upwelling

    NASA Astrophysics Data System (ADS)

    Ehlert, Claudia; Grasse, Patricia; Mollier-Vogel, Elfi; Böschen, Tebke; Franz, Jasmin; de Souza, Gregory F.; Reynolds, Ben C.; Stramma, Lothar; Frank, Martin

    2012-12-01

    We present the first systematic study of the silicon isotope composition in the water column (δ30Si) and in diatoms (δ30Sidiatom) from the underlying surface sediments in a coastal upwelling region. The surface waters upwelling on the shelf off Peru are mainly fed by southward flowing subsurface waters along the coast, which show a mean δ30Si of +1.5‰. The concentration of dissolved silicic acid (Si(OH)4) increases towards the south in these waters and with increasing water depth, suggesting lateral mixing with water masses from the south and intense remineralisation of particulate biogenic silica (bSiO2) in the water column and in the surface sediments. Surface waters in the realm of the most intense upwelling between 5°S and 15°S have only marginally elevated δ30Si values (δ30Si = +1.7‰) with respect to the source Si isotope composition, whereas further north and south, where upwelling is less pronounced, surface waters are more strongly fractionated (δ30Si up to +2.8‰) due to the stronger utilisation of the smaller amounts of available Si(OH)4. The degree of Si(OH)4 utilisation in the surface waters along the shelf estimated from the Si(OH)4 concentration data ranges from 51% to 93%. The δ30Sidiatom values of hand-picked diatoms in the underlying surface sediments vary from +0.6‰ to +2.0‰, which is within the range of the expected fractionation between surface waters and diatoms. The fractionation signal in the surface waters produced during formation of the diatoms is reflected by the δ30Sidiatom values in the underlying sediments, with the lowest δ30Sidiatom values in the main upwelling region. The silicon isotope compositions of bSiO2 (δ30Si) from the same surface sediment samples are generally much lower than the δ30Sidiatom signatures indicating a significant contamination of the bSiO2 with biogenic siliceous material other than diatoms, such as sponge spicules. This shift towards lighter δ30Si values by up to -1.3‰ compared to

  8. Abundance, Dynamics, and Biogeographic Distribution of Seven Polycyclic Aromatic Hydrocarbon Dioxygenase Gene Variants in Coastal Sediments of Patagonia

    PubMed Central

    Marcos, Magalí S.; Lozada, Mariana; Di Marzio, Walter D.

    2012-01-01

    Novel polycyclic aromatic hydrocarbon dioxygenase gene variants were present in abundances similar to or higher than those of phnA1 from Cycloclasticus spp. at a chronically polluted subantarctic coastal marine environment in Patagonia. These novel gene variants were detected over a 6-year time span and were also present in sediments from temperate Patagonian sites. PMID:22226948

  9. Results of rainfall simulation to estimate sediment-bound carbon and nitrogen loss from an Atlantic Coastal Plain (USDA) ultisol

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The impact of erosion on soil and carbon loss and redistribution within landscapes is an important component for developing estimates of carbon sequestration potential, management plans to maintain soil quality, and transport of sediment bound agrochemicals. Soils of the Southeastern U.S. Coastal Pl...

  10. Physiological Diversity and Distributions of Heterotrophic Bacteria in Deep Cretaceous Sediments of the Atlantic Coastal Plain

    PubMed Central

    Fredrickson, James K.; Balkwill, David L.; Zachara, John M.; Li, Shu-Mei W.; Brockman, Fred J.; Simmons, Mary A.

    1991-01-01

    A series of 23 intact core segments was obtained from two distinct deep subsurface geological formations, the Middendorf and the Cape Fear formations, underlying the southeastern coastal plain of South Carolina. The Middendorf formation in this region consists of permeable, saturated, sandy sediments; the Cape Fear formation consists mainly of less permeable sediments. The core segments were separated by vertical distances ranging from several centimeters to 48 m. Aerobic chemoheterotrophic bacteria were enumerated on a dilute medium, and populations ranged from 3.1 to 6.4 log CFU g of sediment-1 in the Middendorf cores and from below detection to 4.3 log CFU g-1 in the Cape Fear cores. A total of 198 morphologically distinct colony types were isolated, purified, and subjected to 108 different physiological measurements. The isolates from the two formations were distinct (i.e., they produced substantially different response patterns to the various physiological measurements), as were those in different core samples from the same formation. Cluster analysis revealed 21 different biotypes based on similarities of 75% or higher in response patterns to 21 physiological assays. One biotype contained 57 (29%) of the subsurface isolates, 10 biotypes contained 5 or more isolates, and the remainder had 4 or fewer. The organic compounds that were most commonly metabolized by the subsurface bacteria included Tween 40 (85%) and β-hydroxybutyric acid (60%). Organic acids, in general, were also commonly metabolized by the subsurface bacteria. Isolates from the Cape Fear core segments were capable of metabolizing a higher percentage of the substrates than were bacteria isolated from the Middendorf formation. Although the heterogeneous distributions of bacteria in deep subsurface sediments may make it difficult to use aquifer microcosms to predict in situ biotransformation rates, the diversity of the physiological properties of these organisms offers promise for in situ