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Sample records for cod homogenate treated

  1. Removal of turbidity, COD and BOD from secondarily treated sewage water by electrolytic treatment

    NASA Astrophysics Data System (ADS)

    Chopra, Ashok Kumar; Sharma, Arun Kumar

    2013-03-01

    A preliminary study was conducted for the removal of turbidity (TD), chemical oxygen demand (COD) and biochemical oxygen demand (BOD) from secondarily treated sewage (STS) water through the electrolytic batch mode experiments with DC power supply (12 V) up to 30 min and using a novel concept of electrode combinations of different metals. The different surface areas (40, 80, 120 and 160 cm2) of the electrodes as a function of cross-sectional area of the reactor and the effect of inter-electrode distances (2.5-10 cm) on the electrolysis of STS water were studied. This study revealed that the effluent can be effectively treated with the aluminum (Al) and iron (Fe) electrode combinations (Al-Fe and Fe-Al). The maximum removal of TD (81.51 %), COD (74.36 %) and BOD (70.86 %) was recorded with Al-Fe electrode system, while the removal of these parameters was found to be 71.11, 64.95 and 61.87 %, respectively, with Fe-Al electrode combination. The Al-Fe electrode combination had lower electrical energy consumption (2.29 kWh/m3) as compared to Fe-Al electrode combination (2.50 kWh/m3). The economic evaluation of electrodes showed that Al-Fe electrode combination was better than Fe-Al electrode combination. This revealed the superiority of aluminum as a sacrificial electrode over that of iron which can probably be attributed to better flocculation capabilities of aluminum than that of iron.

  2. Biogas-pH automation control strategy for optimizing organic loading rate of anaerobic membrane bioreactor treating high COD wastewater.

    PubMed

    Yu, Dawei; Liu, Jibao; Sui, Qianwen; Wei, Yuansong

    2016-03-01

    Control of organic loading rate (OLR) is essential for anaerobic digestion treating high COD wastewater, which would cause operation failure by overload or less efficiency by underload. A novel biogas-pH automation control strategy using the combined gas-liquor phase monitoring was developed for an anaerobic membrane bioreactor (AnMBR) treating high COD (27.53 g·L(-1)) starch wastewater. The biogas-pH strategy was proceeded with threshold between biogas production rate >98 Nml·h(-1) preventing overload and pH>7.4 preventing underload, which were determined by methane production kinetics and pH titration of methanogenesis slurry, respectively. The OLR and the effluent COD were doubled as 11.81 kgCOD·kgVSS(-1)·d(-1) and halved as 253.4 mg·L(-1), respectively, comparing with a constant OLR control strategy. Meanwhile COD removal rate, biogas yield and methane concentration were synchronously improved to 99.1%, 312 Nml·gCODin(-1) and 74%, respectively. Using the biogas-pH strategy, AnMBR formed a "pH self-regulation ternary buffer system" which seizes carbon dioxide and hence provides sufficient buffering capacity. PMID:26722804

  3. Nitrogen removal performance in planted and unplanted horizontal subsurface flow constructed wetlands treating different influent COD/N ratios.

    PubMed

    Wang, Wei; Ding, Yi; Ullman, Jeffrey L; Ambrose, Richard F; Wang, Yuhui; Song, Xinshan; Zhao, Zhimiao

    2016-05-01

    Microcosm horizontal subsurface flow constructed wetlands (HSSFCWs) were used to examine the impacts of vegetation on nitrogen dynamics treating different influent COD/N ratios (1:1, 4:1, and 8:1). An increase in the COD/N ratio led to increased reductions in NO3 and total inorganic nitrogen (TIN) in planted and unplanted wetlands, but diminished removal of NH4. The HSSFCW planted with Canna indica L. exhibited a significant reduction in NH4 compared to the unplanted system, particularly in the active root zone where NH4 removal performance increased by up to 26 % at the COD/N ratio of 8:1. There was no significant difference in NO3 removal between the planted and unplanted wetlands. TIN removal efficiency in the planted wetland increased with COD/N ratios, which was likely influenced by plant uptake. NH4 reductions were greater in planted wetland at the 20- and 40-cm depths while NO3 reductions were uniformly greater with depth in all cases, but no statistical difference was impacted by depth on TIN removal. These findings show that planting a HSSFCW can provide some benefit in reducing nitrogen loads in effluents, but only when a sufficient carbon source is present. PMID:26822218

  4. Can spherical eukaryotic microalgae cells be treated as optically homogeneous?

    PubMed

    Bhowmik, Arka; Pilon, Laurent

    2016-08-01

    This study aims to answer the question of whether spherical unicellular photoautotrophic eukaryotic microalgae cells, consisting of various intracellular compartments with their respective optical properties, can be modeled as homogeneous spheres with some effective complex index of refraction. The spectral radiation characteristics in the photosynthetically active region of a spherical heterogeneous microalgae cell, representative of Chlamydomonas reinhardtii and consisting of spherical compartments corresponding to the cell wall, cytoplasm, chloroplast, nucleus, and mitochondria, were estimated using the superposition T-matrix method. The effects of the presence of intracellular lipids and/or starch accumulation caused by stresses, such as nitrogen limitation, were explored. Predictions by the T-matrix method were qualitatively and quantitatively consistent with experimental measurements for various microalgae species. The volume-equivalent homogeneous sphere approximation with volume-averaged effective complex index of refraction gave accurate estimates of the spectral (i) absorption and (ii) scattering cross sections of the heterogeneous cells under both nitrogen-replete and nitrogen-limited conditions. In addition, the effect of a strongly refracting cell wall, representative of Chlorella vulgaris, was investigated. In this case, for the purpose of predicting their integral radiation characteristics, the microalgae should be represented as a coated sphere with a coating corresponding to the cell wall and a homogeneous core with volume-averaged complex index of refraction for the rest of the cell. However, both homogeneous sphere and coated sphere approximations predicted strong resonances in the scattering phase function and spectral backscattering cross section that were not observed in that of the heterogeneous cells. PMID:27505647

  5. Anammox for nitrogen removal from anaerobically pre-treated municipal wastewater: Effect of COD/N ratios on process performance and bacterial community structure.

    PubMed

    Leal, Cíntia Dutra; Pereira, Alyne Duarte; Nunes, Fernando Terra; Ferreira, Luísa Ornelas; Coelho, Aline Carolina Cirilo; Bicalho, Sarah Kinaip; Mac Conell, Erika F Abreu; Ribeiro, Thiago Bressani; de Lemos Chernicharo, Carlos Augusto; de Araújo, Juliana Calábria

    2016-07-01

    Long-term effects of COD/N ratios on the nitrogen removal performance and bacterial community of an anammox reactor were evaluated by adding a synthetic medium (with glucose) and real anaerobic effluent to a SBR. At a COD/N ratio of 2.8 (COD, 390mg·L(-1)) ammonium removal efficiency was 66%, while nitrite removal remained high (99%). However, at a COD/N ratio of 5.0 (COD, 300mg·L(-1)), ammonium and nitrite removal efficiencies were high (84% and 99%, respectively). High COD, nitrite, and ammonium removal efficiencies (80%, 90% and 95%, respectively) were obtained on adding anaerobically pre-treated municipal wastewater (with nitrite) to the reactor. DGGE revealed that the addition of anaerobic effluent changed the bacterial community structure and selected for DNA sequences related to Brocadia sinica and Chloroflexi. Adding glucose and anaerobic effluent increased denitrifiers concentration threefold. Thus, the possibility of using the anammox process to remove nitrogen from anaerobically pre-treated municipal wastewater was demonstrated. PMID:27023380

  6. The effect and biological mechanism of COD/TN ratio on nitrogen removal in a novel upflow microaerobic sludge reactor treating manure-free piggery wastewater.

    PubMed

    Li, Jianzheng; Meng, Jia; Li, Jiuling; Wang, Cheng; Deng, Kaiwen; Sun, Kai; Buelna, Gerardo

    2016-06-01

    A novel upflow microaerobic sludge reactor (UMSR) was constructed to treat manure-free piggery wastewater with high NH4(+)-N concentration and low COD/TN ratio, and the effect and biological mechanism of COD/TN ratio on nitrogen removal were investigated at a constant hydraulic retention time of 8h and 35°C. The results showed that the UMSR could treat the wastewater with a better synchronous removal of COD, NH4(+)-N and TN. The microaerobic UMSR allowed nitrifiers, and heterotrophic and autotrophic denitrifiers to thrive in the flocs, revealing a multiple nitrogen removal mechanism in the reactor. Both the nitrifiers and denitrifiers would be restricted by an influent COD/TN ratio more than 0.82, resulting in a decrease of TN removal in the UMSR. To get a TN removal over 80% with a TN load removal above 0.86kg/(m(3)·d) in the UMSR, the influent COD/TN ratio should be less than 0.70. PMID:26972024

  7. Structure of nitrogen-converting communities induced by hydraulic retention time and COD/N ratio in constantly aerated granular sludge reactors treating digester supernatant.

    PubMed

    Cydzik-Kwiatkowska, Agnieszka; Rusanowska, Paulina; Zielińska, Magdalena; Bernat, Katarzyna; Wojnowska-Baryła, Irena

    2014-02-01

    This study investigated how hydraulic retention time (HRT) and COD/N ratio affect nitrogen-converting consortia in constantly aerated granules treating high-ammonium digester supernatant. Three HRTs (10, 13, 19 h) were tested at COD/N ratios of 4.5 and 2.3. Denaturing gradient gel electrophoresis and relative real-time PCR were used to characterize the microbial communities. When changes in HRT and COD/N increased nitrogen loading, the ratio of the relative abundance of aerobic to anaerobic ammonium-oxidizers decreased. The COD/N ratio determined the species composition of the denitrifiers; however, Thiobacillus denitrificans, Pseudomonas denitrificans and Azoarcus sp. showed a high tolerance to the environmental conditions and occurred in the granules from all reactors. Denitrifier genera that support granule formation were identified, such as Pseudomonas, Shinella, and Flavobacterium. In aerated granules, nirK-possessing bacteria were more diverse than nirS-possessing bacteria. At a low COD/N ratio, N2O-reducer diversity increased because of the presence of bacteria known as aerobic denitrifiers. PMID:24384323

  8. Ground-Water-Quality Data for a Treated-Wastewater Plume Undergoing Natural Restoration, Ashumet Valley, Cape Cod, Massachusetts, 1994-2004

    USGS Publications Warehouse

    Savoie, Jennifer G.; Smith, Richard L.; Kent, Douglas B.; Hess, Kathryn M.; LeBlanc, Denis R.; Barber, Larry B.

    2006-01-01

    A plume of contaminated ground water extends from former disposal beds at the Massachusetts Military Reservation wastewater-treatment plant toward Ashumet Pond, and farther southward toward coastal ponds and Vineyard Sound, Cape Cod, Massachusetts. Treated sewage-derived wastewater was discharged to the rapid-infiltration beds for nearly 60 years before the disposal site was moved to a different location in December 1995. Water-quality samples were collected periodically from monitoring wells and multilevel samplers during and after the disposal period to characterize the nature and extent of the contaminated ground water and to observe the water-quality changes after the wastewater disposal ceased. Data are presented here for water samples collected from 1994 through 2004 from 16 wells (at 2 locations) and 14 multilevel samplers (at 9 locations) along a longitudinal transect that extends through one of the disposal beds. Data collected from the treated-wastewater plume are presented in tabular format. These data include field parameters; concentrations of cations, anions, nitrate, ammonium, and organic and inorganic carbon species; and ultraviolet/visible absorbance. The natural restoration of the sand and gravel aquifer after removal of the nearly 60-year-long treated-wastewater source, along with interpretations of the water quality in the treated-wastewater plume on Cape Cod, have been documented in several published reports that are listed in the references.

  9. Cape Cod

    Atmospheric Science Data Center

    2014-05-15

    ... vertical-viewing (nadir) camera image. This nearly cloud-free picture was acquired on April 13, 2000 during Terra orbit 1708. South ... available at JPL April 13, 2000 - Cloud free Cape Cod. project:  MISR category:  ...

  10. Groundwater-quality data for a treated-wastewater plume near the Massachusetts Military Reservation, Ashumet Valley, Cape Cod, Massachusetts, 2006-08

    USGS Publications Warehouse

    Savoie, Jennifer G.; LeBlanc, Denis R.; Fairchild, Gillian M.; Smith, Richard L.; Kent, Douglas B.; Barber, Larry B.; Repert, Deborah A.; Hart, Charles P.; Keefe, Steffanie H.; Parsons, Luke A.

    2012-01-01

    A plume of contaminated groundwater extends from former disposal beds at the Massachusetts Military Reservation's wastewater-treatment plant toward Ashumet Pond, coastal ponds, and Vineyard Sound, Cape Cod, Massachusetts. Treated sewage-derived wastewater was discharged to the rapid-infiltration beds for nearly 60 years before the disposal site was moved to a different location in December 1995. Water-quality samples were collected from monitoring wells, multilevel samplers, and profile borings to characterize the nature and extent of the contaminated groundwater and to observe the water-quality changes after the wastewater disposal ceased. Data are presented here for water samples collected in 2007 from 394 wells (at 121 well-cluster locations) and 780 multilevel-sampler ports (at 42 locations) and in 2006-08 at 306 depth intervals in profile borings (at 20 locations) in and near the treated-wastewater plume. Analyses of these water samples for field parameters (specific conductance, pH, dissolved oxygen and phosphate concentrations, and alkalinity); absorbance of ultraviolet/visible light; and concentrations of nitrous oxide, dissolved organic carbon, methylene blue active substances, selected anions and nutrients, including nitrate and ammonium, and selected inorganic solutes, including cations, anions, and minor elements, are presented in tabular format. The natural restoration of the sand and gravel aquifer after removal of the treated-wastewater source, along with interpretations of the water quality in the treated-wastewater plume, have been documented in several published reports that are listed in the references.

  11. "We Treat Them All the Same, But…". Disappearing Ethnic Homogeneity in Czech Classrooms and Teachers' Responses

    ERIC Educational Resources Information Center

    Jarkovská, Lucie; Lišková, Katerina; Obrovská, Jana

    2015-01-01

    This article argues that the Czech education system is structured to operate in an ethnically homogeneous society. Although the Czech Republic is becoming increasingly heterogeneous, teachers deploy discursive practices of "sameness despite difference" that obscure such growing diversity. This article is grounded in the historical…

  12. The effectiveness of permethrin-treated deer stations for control of the Lyme disease vector Ixodes scapularis on Cape Cod and the islands: a five-year experiment

    PubMed Central

    2014-01-01

    Background The use of animal host-targeted pesticide application to control blacklegged ticks, which transmit the Lyme disease bacterium between wildlife hosts and humans, is receiving increased attention as an approach to Lyme disease risk management. Included among the attractive features of host-targeted approaches is the reduced need for broad-scale pesticide usage. In the eastern USA, one of the best-known of these approaches is the corn-baited “4-poster” deer feeding station, so named because of the four pesticide-treated rollers that surround the bait troughs. Wildlife visitors to these devices receive an automatic topical application of acaricide, which kills attached ticks before they can reproduce. We conducted a 5-year controlled experiment to estimate the effects of 4-poster stations on tick populations in southeastern Massachusetts, where the incidence of Lyme disease is among the highest in the USA. Methods We deployed a total of forty-two 4-posters among seven treatment sites and sampled for nymph and adult ticks at these sites and at seven untreated control sites during each year of the study. Study sites were distributed among Cape Cod, Martha’s Vineyard, and Nantucket. The density of 4-poster deployment was lower than in previous 4-poster studies and resembled or possibly exceeded the levels of effort considered by county experts to be feasible for Lyme disease risk managers. Results Relative to controls, blacklegged tick abundance at treated sites was reduced by approximately 8.4%, which is considerably less than in previous 4-poster studies. Conclusions In addition to the longer duration and greater replication in our study compared to others, possible but still incomplete explanations for the smaller impact we observed include the lower density of 4-poster deployment as well as landscape and mammalian community characteristics that may complicate the ecological relationship between white-tailed deer and blacklegged tick populations. PMID

  13. Estimating effluent COD

    SciTech Connect

    Eckenfelder, W.W.; Landine, R.

    1995-06-01

    In many parts of the world, chemical oxygen demand (COD) is a primary effluent parameter. Unlike BOD, which considers only biodegradable organics, COD also includes non-degradable organics and non-degradable biological oxidation by-products, generally referred to as soluble microbial products (SMP). The SMP can vary from 2% to 10% of the influent degradable COD. If the technology is limited to biological treatment only, the degradable COD will be removed. Further reductions in COD will require physical chemical treatments such as activated carbon. Effluent COD values for several industrial wastewaters are presented. Effluent characteristics from the anaerobic treatment of industrial wastewaters are also discussed.

  14. Cod Liver Oil

    MedlinePlus

    ... Talk with your health provider.Medications that slow blood clotting (Anticoagulant / Antiplatelet drugs)Cod liver oil might slow blood clotting. Taking cod liver oil along with medications that ...

  15. Cod Liver Oil

    MedlinePlus

    ... cod liver oil on their skin to speed wound healing. When taken in appropriate doses by mouth, cod ... young children. Heart disease. Systemic lupus erythematosus (SLE). Wound healing. Glaucoma. Other conditions. More evidence is needed to ...

  16. Structural, optical, and transport properties of nanocrystalline bismuth telluride thin films treated with homogeneous electron beam irradiation and thermal annealing.

    PubMed

    Takashiri, Masayuki; Asai, Yuki; Yamauchi, Kazuki

    2016-08-19

    We investigated the effects of homogeneous electron beam (EB) irradiation and thermal annealing treatments on the structural, optical, and transport properties of bismuth telluride thin films. Bismuth telluride thin films were prepared by an RF magnetron sputtering method at room temperature. After deposition, the films were treated with homogeneous EB irradiation, thermal annealing, or a combination of both the treatments (two-step treatment). We employed Williamson-Hall analysis for separating the strain contribution from the crystallite domain contribution in the x-ray diffraction data of the films. We found that strain was induced in the thin films by EB irradiation and was relieved by thermal annealing. The crystal orientation along c-axis was significantly enhanced by the two-step treatment. Scanning electron microscopy indicated the melting and aggregation of nano-sized grains on the film surface by the two-step treatment. Optical analysis indicated that the interband transition of all the thin films was possibly of the indirect type, and that thermal annealing and two-step treatment methods increased the band gap of the films due to relaxation of the strain. Thermoelectric performance was significantly improved by the two-step treatment. The power factor reached a value of 17.2 μW (cm(-1) K(-2)), approximately 10 times higher than that of the as-deposited thin films. We conclude that improving the crystal orientation and relaxing the strain resulted in enhanced thermoelectric performance. PMID:27389820

  17. Structural, optical, and transport properties of nanocrystalline bismuth telluride thin films treated with homogeneous electron beam irradiation and thermal annealing

    NASA Astrophysics Data System (ADS)

    Takashiri, Masayuki; Asai, Yuki; Yamauchi, Kazuki

    2016-08-01

    We investigated the effects of homogeneous electron beam (EB) irradiation and thermal annealing treatments on the structural, optical, and transport properties of bismuth telluride thin films. Bismuth telluride thin films were prepared by an RF magnetron sputtering method at room temperature. After deposition, the films were treated with homogeneous EB irradiation, thermal annealing, or a combination of both the treatments (two-step treatment). We employed Williamson–Hall analysis for separating the strain contribution from the crystallite domain contribution in the x-ray diffraction data of the films. We found that strain was induced in the thin films by EB irradiation and was relieved by thermal annealing. The crystal orientation along c-axis was significantly enhanced by the two-step treatment. Scanning electron microscopy indicated the melting and aggregation of nano-sized grains on the film surface by the two-step treatment. Optical analysis indicated that the interband transition of all the thin films was possibly of the indirect type, and that thermal annealing and two-step treatment methods increased the band gap of the films due to relaxation of the strain. Thermoelectric performance was significantly improved by the two-step treatment. The power factor reached a value of 17.2 μW (cm‑1 K‑2), approximately 10 times higher than that of the as-deposited thin films. We conclude that improving the crystal orientation and relaxing the strain resulted in enhanced thermoelectric performance.

  18. Homogeneous liquid crystal alignment characteristics on solution-derived HfYGaO films treated with IB irradiation.

    PubMed

    Lee, Yun-Gun; Park, Hong-Gyu; Jeong, Hae-Chang; Lee, Ju Hwan; Heo, Gi-Seok; Seo, Dae-Shik

    2015-06-29

    Solution-derived HfYGaO films have been treated by ion beam (IB) irradiation and used as liquid crystal (LC) alignment layers. Solution processing was adopted due to its simplicity, high throughput, and facile composition modification. Homogeneous and uniform LC alignment was achieved on the IB-irradiated HfYGaO films, and when these films were adopted in twisted nematic (TN) cells, electro-optical performance comparable to that of TN cells with conventional polyimide layers was achieved, with almost no capacitance-voltage hysteresis. Moreover, LC cells based on IB-irradiated HfYGaO films had a high thermal budget. The proposed IB-irradiated solution-derived HfYGaO films have considerable potential for use in advanced LC applications. PMID:26191738

  19. Efficiency and bacterial populations related to pollutant removal in an upflow microaerobic sludge reactor treating manure-free piggery wastewater with low COD/TN ratio.

    PubMed

    Meng, Jia; Li, Jiuling; Li, Jianzheng; Sun, Kai; Antwi, Philip; Deng, Kaiwen; Wang, Cheng; Buelna, Gerardo

    2016-02-01

    A novel upflow microaerobic sludge reactor (UMSR) had proved excellent in nitrogen removal from manure-free piggery wastewater characterized by high concentration of ammonium (NH4(+)-N) and low chemical oxygen demand (COD) to total nitrogen (TN) ratio, but the biological mechanism in the UMSR was still indeterminate. With a constant nitrogen loading rate of 1.10kg/(m(3)d) at hydraulic retention time 8h, the UMSR was kept performing for 67days in the present research and the average load removal of COD, NH4(+)-N and TN was as high as 0.72, 0.76 and 0.94kg/(m(3)d), respectively. Compared with the inoculated sludge, the acclimated sludge was richer in genera responsible for the biological removal of carbon, nitrogen and phosphorus. Ammonium oxidation bacteria, heterotrophic denitrifiers, autotrophic denitrifiers and phosphate accumulating organisms coexisted perfectly in the microaerobic system, and their synergistic action made the UMSR perform well in COD, NH4(+)-N, TN and phosphate removal. PMID:26649897

  20. Effect of carrier fill ratio on biofilm properties and performance of a hybrid fixed-film bioreactor treating coal gasification wastewater for the removal of COD, phenols and ammonia-nitrogen.

    PubMed

    Rava, E; Chirwa, E

    2016-01-01

    The purpose of this study was to determine the effect different biofilm carrier filling ratios would have on biofilm morphology and activity and bacterial diversity in a hybrid fixed-film bioreactor treating high strength coal gasification wastewater (CGWW) for the removal of chemical oxygen demand (COD), phenols and ammonia-nitrogen. Results showed that a carrier fill of 70% formed a 'compact' biofilm, a 50% fill formed a 'rippling' biofilm and a 30% fill formed a 'porous' biofilm. The highest microbial activity was obtained with a 50% carrier fill supporting a relatively thin biofilm. The highest level of biofilm bound metals were aluminium, silicon, calcium and iron in the 'compact' biofilm; nitrogen, magnesium, chloride, sodium and potassium in the 'rippling' biofilm, and copper in the 'porous' biofilm. The bioreactor improved the quality of the CGWW by removing 49% and 78% of the COD and phenols, respectively. However, no significant amount of ammonia-nitrogen was removed since nitrification did not take place due to heterotrophic bacteria out-competing autotrophic nitrifying bacteria in the biofilm. The dominant heterotrophic genera identified for all three carrier filling ratios were Thauera, Pseudaminobacter, Pseudomonas and Diaphorobacter. PMID:27191568

  1. Effect of treated-sewage contamination upon bacterial energy charge, adenine nucleotides, and DNA content in a sandy aquifer on Cape Cod.

    PubMed Central

    Metge, D W; Brooks, M H; Smith, R L; Harvey, R W

    1993-01-01

    Changes in adenylate energy charge (ECA) and in total adenine nucleotides (A(T) and DNA content (both normalized to the abundance of free-living, groundwater bacteria) in response to carbon loading were determined for a laboratory-grown culture and for a contaminated aquifer. The latter study involved a 3-km-long transect through a contaminant plume resulting from continued on-land discharge of secondary sewage to a shallow, sandy aquifer on Cape Cod, Mass. With the exception of the most contaminated groundwater immediately downgradient from the contaminant source, DNA and adenylate levels correlated strongly with bacterial abundance and decreased exponentially with increasing distance downgradient. ECAS (0.53 to 0.60) and the ratios of ATP to DNA (0.001 to 0.003) were consistently low, suggesting that the unattached bacteria in this groundwater study are metabolically stressed, despite any eutrophication that might have occurred. Elevated ECAS (up to 0.74) were observed in glucose-amended groundwater, confirming that the metabolic state of this microbial community could be altered. In general, per-bacterium DNA and ATP contents were approximately twofold higher in the plume than in surrounding groundwater, although ECA and per-bacterium levels of A(T) differed little in the plume and the surrounding uncontaminated groundwater. However, per-bacterium levels of DNA and A(T) varied six- and threefold, respectively, during a 6-h period of decreasing growth rate for an unidentified pseudomonad isolated from contaminated groundwater and grown in batch culture.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:8357263

  2. Effect of treated-sewage contamination upon bacterial energy charge, adenine nucleotides, and DNA content in a sandy aquifer on cape cod

    USGS Publications Warehouse

    Metge, D.W.; Brooks, M.H.; Smith, R.L.; Harvey, R.W.

    1993-01-01

    Changes in adenylate energy charge (EC(A)) and in total adenine nucleotides (A(T)) and DNA content (both normalized to the abundance of free- living, groundwater bacteria) in response to carbon loading were determined for a laboratory-grown culture and for a contaminated aquifer. The latter study involved a 3-km-long transect through a contaminant plume resulting from continued on-land discharge of secondary sewage to a shallow, sandy aquifer on Cape Cod, Mass. With the exception of the most contaminated groundwater immediately downgradient from the contaminant source, DNA and adenylate levels correlated strongly with bacterial abundance and decreased exponentially with increasing distance downgradient. EC(A)s (0.53 to 0.60) and the ratios of ATP to DNA (0.001 to 0.003) were consistently low, suggesting that the unattached bacteria in this groundwater study are metabolically stressed, despite any eutrophication that might have occurred. Elevated EC(A)s (up to 0.74) were observed in glucose-amended groundwater, confirming that the metabolic state of this microbial community could be altered. In general, per-bacterium DNA and ATP contents were approximately twofold higher in the plume than in surrounding groundwater, although EC(A) and per-bacterium levels of A(T) differed little in the plume and the surrounding uncontaminated groundwater. However, per-bacterium levels of DNA and A(T) varied six- and threefold, respectively, during a 6-h period of decreasing growth rate for an unidentified pseudomonad isolated from contaminated groundwater and grown in batch culture. These data suggest that the DNA content of groundwater bacteria may be more sensitive than their A(T) to the degree of carbon loading, which may have significant ramifications in the use of nucleic acids and adenine nucleotides for estimating the metabolic status of bacterial communities within more highly contaminated aquifers.

  3. Cape Cod, Massachusetts, USA

    NASA Technical Reports Server (NTRS)

    1990-01-01

    This view of Cape Cod, Massachusetts, USA (42.0N, 70.0W) is a detailed look at the national seashore recreation area with its many fine resorts and summer estate homes. Geologically, the cape is a deposit of earth and stone called a terminal moraine, left by the great Pleistocene glaciers of about 20,000 years ago.

  4. Cape Cod, Massachusetts, USA

    NASA Technical Reports Server (NTRS)

    1990-01-01

    This view of Cape Cod, Massachusetts, USA (42.0N, 70.5W) is a detailed look at the national seashore recreation area with its many fine resorts and summer estate homes. Geologically, the cape is a deposit of earth and stone called a terminal moraine, left by the great Pleistocene glaciers of about 20,000 years ago.

  5. Genetic Structure and Demographic History Should Inform Conservation: Chinese Cobras Currently Treated as Homogenous Show Population Divergence

    PubMed Central

    Lin, Long-Hui; Qu, Yan-Fu; Li, Hong; Zhou, Kai-Ya; Ji, Xiang

    2012-01-01

    An understanding of population structure and genetic diversity is crucial for wildlife conservation and for determining the integrity of wildlife populations. The vulnerable Chinese cobra (Naja atra) has a distribution from the mouth of the Yangtze River down to northern Vietnam and Laos, within which several large mountain ranges and water bodies may influence population structure. We combined 12 microsatellite loci and 1117 bp of the mitochondrial cytochrome b gene to explore genetic structure and demographic history in this species, using 269 individuals from various localities in Mainland China and Vietnam. High levels of genetic variation were identified for both mtDNA and microsatellites. mtDNA data revealed two main (Vietnam + southern China + southwestern China; eastern + southeastern China) and one minor (comprising only two individuals from the westernmost site) clades. Microsatellite data divided the eastern + southeastern China clade further into two genetic clusters, which include individuals from the eastern and southeastern regions, respectively. The Luoxiao and Nanling Mountains may be important barriers affecting the diversification of lineages. In the haplotype network of cytchrome b, many haplotypes were represented within a “star” cluster and this and other tests suggest recent expansion. However, microsatellite analyses did not yield strong evidence for a recent bottleneck for any population or genetic cluster. The three main clusters identified here should be considered as independent management units for conservation purposes. The release of Chinese cobras into the wild should cease unless their origin can be determined, and this will avoid problems arising from unnatural homogenization. PMID:22558439

  6. How cod shapes its world

    NASA Astrophysics Data System (ADS)

    Van Leeuwen, A.; De Roos, A. M.; Persson, L.

    Cod stocks in the North West Atlantic and the Baltic Sea have shown similar dynamics in recent decades with a rapid decline in abundance and a lack of stock recovery following a period of large biomass. We explore whether the lack of recovery can be ascribed to an emergent Allee effect, which is a mechanism intrinsic to the community in contrast to explanations involving environmental factors. We formulate a stage-structured biomass model for the cod-sprat interaction in the Baltic Sea, paying special attention to the size-dependent prey preference of differently sized cod. The model predicts that alternative community states can occur under the same environmental conditions, in which cod is either present or absent. In a stable equilibrium with its main prey cod has a strong effect on the prey size distribution, resulting in larger densities of preferred prey sizes for cod than in the absence of any predation. Cod thus shapes its food environment to its own benefit. Furthermore, in response to increased exploitation cod biomass and yield tend to increase unless a stock collapse is imminent. After a cod stock collapse and the consequent drop in predation the prey size distribution becomes stunted and offers insufficient food for cod to grow and recover. These results are consequences of the indirect effects of predation and harvesting, whereby increased mortality relaxes competition among surviving individuals, leading to an increase in food intake and hence increased somatic growth and reproduction. We review observed community changes following the collapse of the cod stocks in the North West Atlantic and the Baltic Sea in the light of model predictions. In line with our model predictions growth in body size of cod has slowed down after the collapse, despite high densities of prey biomass. Furthermore, estimates of total prey population fecundity in the Baltic Sea identify the emergent Allee effect as a potentially important mechanism contributing to the lack of

  7. Cape Cod, Massachusetts, USA

    NASA Technical Reports Server (NTRS)

    1990-01-01

    Cape Cod, Massachusetts, USA (42.0N, 70.5W) is a national seashore recreation area with many fine resorts and summer estate homes. Geologically, the cape is a deposit of earth and stone called a terminal moraine, left by the great Pleistocene glaciers of about 20,000 years ago. The through canal at the base of the cape is a manmade feature for waterborne traffic and is part of the Intercoastal Canal network. The cape actually begins south of the canal.

  8. Homogeneity Pursuit

    PubMed Central

    Ke, Tracy; Fan, Jianqing; Wu, Yichao

    2014-01-01

    This paper explores the homogeneity of coefficients in high-dimensional regression, which extends the sparsity concept and is more general and suitable for many applications. Homogeneity arises when regression coefficients corresponding to neighboring geographical regions or a similar cluster of covariates are expected to be approximately the same. Sparsity corresponds to a special case of homogeneity with a large cluster of known atom zero. In this article, we propose a new method called clustering algorithm in regression via data-driven segmentation (CARDS) to explore homogeneity. New mathematics are provided on the gain that can be achieved by exploring homogeneity. Statistical properties of two versions of CARDS are analyzed. In particular, the asymptotic normality of our proposed CARDS estimator is established, which reveals better estimation accuracy for homogeneous parameters than that without homogeneity exploration. When our methods are combined with sparsity exploration, further efficiency can be achieved beyond the exploration of sparsity alone. This provides additional insights into the power of exploring low-dimensional structures in high-dimensional regression: homogeneity and sparsity. Our results also shed lights on the properties of the fussed Lasso. The newly developed method is further illustrated by simulation studies and applications to real data. Supplementary materials for this article are available online. PMID:26085701

  9. Modelling non-homogeneous stochastic reaction-diffusion systems: the case study of gemcitabine-treated non-small cell lung cancer growth

    PubMed Central

    2012-01-01

    Background Reaction-diffusion based models have been widely used in the literature for modeling the growth of solid tumors. Many of the current models treat both diffusion/consumption of nutrients and cell proliferation. The majority of these models use classical transport/mass conservation equations for describing the distribution of molecular species in tumor spheroids, and the Fick's law for describing the flux of uncharged molecules (i.e oxygen, glucose). Commonly, the equations for the cell movement and proliferation are first order differential equations describing the rate of change of the velocity of the cells with respect to the spatial coordinates as a function of the nutrient's gradient. Several modifications of these equations have been developed in the last decade to explicitly indicate that the tumor includes cells, interstitial fluids and extracellular matrix: these variants provided a model of tumor as a multiphase material with these as the different phases. Most of the current reaction-diffusion tumor models are deterministic and do not model the diffusion as a local state-dependent process in a non-homogeneous medium at the micro- and meso-scale of the intra- and inter-cellular processes, respectively. Furthermore, a stochastic reaction-diffusion model in which diffusive transport of the molecular species of nutrients and chemotherapy drugs as well as the interactions of the tumor cells with these species is a novel approach. The application of this approach to he scase of non-small cell lung cancer treated with gemcitabine is also novel. Methods We present a stochastic reaction-diffusion model of non-small cell lung cancer growth in the specification formalism of the tool Redi, we recently developed for simulating reaction-diffusion systems. We also describe how a spatial gradient of nutrients and oncological drugs affects the tumor progression. Our model is based on a generalization of the Fick's first diffusion law that allows to model

  10. Heterogenization of Homogeneous Catalysts: the Effect of the Support

    SciTech Connect

    Earl, W.L.; Ott, K.C.; Hall, K.A.; de Rege, F.M.; Morita, D.K.; Tumas, W.; Brown, G.H.; Broene, R.D.

    1999-06-29

    We have studied the influence of placing a soluble, homogeneous catalyst onto a solid support. We determined that such a 'heterogenized' homogeneous catalyst can have improved activity and selectivity for the asymmetric hydrogenation of enamides to amino acid derivatives. The route of heterogenization of RhDuPhos(COD){sup +} cations occurs via electrostatic interactions with anions that are capable of strong hydrogen bonding to silica surfaces. This is a novel approach to supported catalysis. Supported RhDuPhos(COD){sup +} is a recyclable, non-leaching catalyst in non-polar media. This is one of the few heterogenized catalysts that exhibits improved catalytic performance as compared to its homogeneous analog.

  11. 77 FR 9699 - Cape Cod National Seashore Advisory Commission; Cape Cod National Seashore, South Wellfleet, MA

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-17

    ... National Park Service Cape Cod National Seashore Advisory Commission; Cape Cod National Seashore, South... Stat. 770, 5 U.S.C. App 1, Section 10) of a meeting of the Cape Cod National Seashore Advisory Commission. DATES: The meeting of the Cape Cod National Seashore Advisory Commission will be held on March...

  12. 75 FR 5622 - Cape Cod National Seashore, South Wellfleet, MA; Cape Cod National Seashore Advisory Commission

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-03

    ... Cape Cod National Seashore, South Wellfleet, MA; Cape Cod National Seashore Advisory Commission AGENCY.... App 1, Section 10) of a meeting of the Cape Cod National Seashore Advisory Commission. DATES: The meeting of the Cape Cod National Seashore Advisory Commission will be held on March 22, 2010 at 1...

  13. 76 FR 8768 - Cape Cod National Seashore, South Wellfleet, MA; Cape Cod National Seashore Advisory Commission

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-02-15

    ... National Park Service Cape Cod National Seashore, South Wellfleet, MA; Cape Cod National Seashore Advisory... Stat. 770, 5 U.S.C. App 1, Section 10) of a meeting of the Cape Cod National Seashore Advisory Commission. DATES: The meeting of the Cape Cod National Seashore Advisory Commission will be held on March...

  14. 75 FR 20380 - Cape Cod National Seashore; South Wellfleet, Massachusetts; Cape Cod National Seashore Advisory...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-19

    ... National Park Service Cape Cod National Seashore; South Wellfleet, Massachusetts; Cape Cod National... (Pub. L. 92-463, 86 Stat. 770, 5 U.S.C. App 1, Section 10) of a meeting of the Cape Cod National Seashore Advisory Commission. DATES: The meeting of the Cape Cod National Seashore Advisory Commission...

  15. 75 FR 63854 - Cape Cod National Seashore, South Wellfleet, MA; Cape Cod National Seashore Advisory Commission

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-18

    ... National Park Service Cape Cod National Seashore, South Wellfleet, MA; Cape Cod National Seashore Advisory... Stat. 770, 5 U.S.C. App 1, Section 10) of a meeting of the Cape Cod National Seashore Advisory Commission. DATES: The meeting of the Cape Cod National Seashore Advisory Commission will be held on...

  16. 75 FR 77900 - Cape Cod National Seashore, South Wellfleet, MA; Cape Cod National Seashore Advisory Commission

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-12-14

    ... National Park Service Cape Cod National Seashore, South Wellfleet, MA; Cape Cod National Seashore Advisory... Stat. 770, 5 U.S.C. App 1, Section 10) of a meeting of the Cape Cod National Seashore Advisory Commission. DATES: The meeting of the Cape Cod National Seashore Advisory Commission will be held on...

  17. 75 FR 34479 - Cape Cod National Seashore; South Wellfleet, MA; Cape Cod National Seashore Advisory Commission

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-17

    ... National Park Service Cape Cod National Seashore; South Wellfleet, MA; Cape Cod National Seashore Advisory... Stat. 770, 5 U.S.C. App 1, Section 10) of a meeting of the Cape Cod National Seashore Advisory Commission. DATES: The meeting of the Cape Cod National Seashore Advisory Commission will be held on July...

  18. 76 FR 66082 - Cape Cod National Seashore, South Wellfleet, MA; Cape Cod National Seashore Advisory Commission

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-10-25

    ... National Park Service Cape Cod National Seashore, South Wellfleet, MA; Cape Cod National Seashore Advisory... Stat. 770, 5 U.S.C. App 1, Section 10) of a meeting of the Cape Cod National Seashore Advisory Commission. DATES: The meeting of the Cape Cod National Seashore Advisory Commission will be held on...

  19. 76 FR 81965 - Cape Cod National Seashore Advisory Commission; Cape Cod National Seashore, South Wellfleet, MA

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-29

    ... National Park Service Cape Cod National Seashore Advisory Commission; Cape Cod National Seashore, South... Stat. 770, 5 U.S.C. App 1, Section 10) of a meeting of the Cape Cod National Seashore Advisory Commission. DATES: The meeting of the Cape Cod National Seashore Advisory Commission will be held on...

  20. Mechanical homogenization increases bacterial homogeneity in sputum.

    PubMed

    Stokell, Joshua R; Khan, Ammad; Steck, Todd R

    2014-07-01

    Sputum obtained from patients with cystic fibrosis (CF) is highly viscous and often heterogeneous in bacterial distribution. Adding dithiothreitol (DTT) is the standard method for liquefaction prior to processing sputum for molecular detection assays. To determine if DTT treatment homogenizes the bacterial distribution within sputum, we measured the difference in mean total bacterial abundance and abundance of Burkholderia multivorans between aliquots of DTT-treated sputum samples with and without a mechanical homogenization (MH) step using a high-speed dispersing element. Additionally, we measured the effect of MH on bacterial abundance. We found a significant difference between the mean bacterial abundances in aliquots that were subjected to only DTT treatment and those of the aliquots which included an MH step (all bacteria, P = 0.04; B. multivorans, P = 0.05). There was no significant effect of MH on bacterial abundance in sputum. Although our results are from a single CF patient, they indicate that mechanical homogenization increases the homogeneity of bacteria in sputum. PMID:24759710

  1. MISR Looks at Cape Cod

    NASA Technical Reports Server (NTRS)

    2000-01-01

    Each year in late November the United States observes the Thanksgiving holiday, commemorating the harvest festival celebrated by the Plymouth colonists and the Native Americans who helped them survive the devastating winter of 1620. Plymouth, Massachusetts, where the Mayflower Pilgrims landed, is located on the west side of Cape Cod Bay, shown in this MISR vertical-viewing (nadir) camera image. This nearly cloud-free picture was acquired on April 13, 2000 during Terra orbit 1708.

    South of the distinctively-shaped Cape Cod are Nantucket Island and Martha's Vineyard. Further west is Block Island, south of Narragansett Bay, Rhode Island. Montauk Point on the eastern tip of Long Island, New York, is visible at the lower left. On the mainland, Providence and Boston appear as gray patches. Jutting out from the Massachusetts coastline, northeast of Boston, is Cape Ann, location of the city of Gloucester, which was settled soon after the Pilgrim's arrival in Plymouth. Gloucester is the oldest fishing port in the eastern United States.

    MISR was built and is managed by NASA's Jet Propulsion Laboratory, Pasadena, CA, for NASA's Office of Earth Science, Washington, DC. The Terra satellite is managed by NASA's Goddard Space Flight Center, Greenbelt, MD. JPL is a division of the California Institute of Technology.

  2. Effect of reflux ratio on COD and nitrogen removals from coke plant wastewaters.

    PubMed

    Shi, X L; Hu, X B; Wang, Z; Ding, L L; Ren, H Q

    2010-01-01

    A laboratory-scale anaerobic-anoxic-aerobic-moving bed biofilm reactor (A1-A2-O-MBBR) system was undertaken to treat coke plant wastewaters from two different factories (wastewater A and B). Wastewater B had higher BOD5/COD ratio and COD/TN ratio than wastewater A. The effects of reflux ratios on COD, TN and NH3-N removals were studied. Results indicated that, with the reflux ratio increased from 2 to 5, COD removals of wastewater A and wastewater B increased from 57.4% to 72.6% and 78.2% to 88.6%, respectively. Meanwhile, TN removals were also increased accompanying reflux ratio rise, from 53.1% to 74.4% for wastewater A and 64.2% to 83.5% for wastewater B. At the same reflux ratio, compared with wastewater A, higher COD and TN removal efficiencies were observed in wastewater B, which had higher BOD5/COD and COD/TN ratio. Reflux ratio had no significant influence on NH3-N removal; 99.0% of the overall NH3-N removal efficiency was achieved by the system for both coke plant wastewaters at any tested reflux ratio. MBBR was effective in NH3-N removal, and about 95% of the NH3-N was removed in the MBBR. PMID:20555197

  3. Removal of ecotoxicity and COD from tank truck cleaning wastewater.

    PubMed

    Dries, Jan; De Schepper, Wim; Geuens, Luc; Blust, Ronny

    2013-01-01

    Tank truck cleaning (TTC) activities generate highly complex wastewater. In a previous study, we found that a significant ecotoxic effect was still present in biologically treated TTC wastewater. The aim of the present study was therefore to investigate the removal of acute toxicity from TTC wastewater by a sequence of technologies routinely applied for industrial wastewater. Acute toxicity was assayed with the widely applied and standardized Vibrio fischeri bioluminescence inhibition test. During a 5-month period, raw wastewater was grab-sampled from a full-scale TTC company and treated by the different unit operations on a laboratory scale. Chemical pretreatment of the wastewater by coagulation with FeCl3 removed approx. 38% of the influent chemical oxygen demand (COD) and reduced the bioluminescence inhibition by 8%. Biological treatment with activated sludge subsequently removed another 77% of the remaining COD. This treatment step also reduced the bioluminescence inhibition but the removal efficiency varied strongly from 5 to 92% for the different samples. Powdered activated carbon almost completely removed the remaining COD and inhibition in all samples. The results suggest that conventional technologies did not suffice for complete removal of toxicity from TTC wastewater, and that advanced wastewater treatment technologies such as activated carbon are required for a satisfactory detoxification. PMID:24292468

  4. Invariant distributions on compact homogeneous spaces

    SciTech Connect

    Gorbatsevich, V V

    2013-12-31

    In this paper, we study distributions on compact homogeneous spaces, including invariant distributions and also distributions admitting a sub-Riemannian structure. We first consider distributions of dimension 1 and 2 on compact homogeneous spaces. After this, we study the cases of compact homogeneous spaces of dimension 2, 3, and 4 in detail. Invariant distributions on simply connected compact homogeneous spaces are also treated. Bibliography: 18 titles.

  5. WASTEWATER RENOVATION AND RETRIEVAL ON CAPE COD

    EPA Science Inventory

    A rapidly increasing population on maritime Cape Cod has generated considerable interest in alternative wastewater disposal techniques which promise to maintain high groundwater quality and promote its conservation. The authors undertake an assessment of agricultural spray-irriga...

  6. Fisheries. Population of origin of Atlantic cod.

    PubMed

    Nielsen, E E; Hansen, M M; Schmidt, C; Meldrup, D; Grønkjaer, P

    2001-09-20

    Most of the world's cod (Gadus morhua) fisheries are now tightly regulated or closed altogether. Being able to link individual fish to their population of origin would assist enormously in policing regulations and in identifying poachers. Here we show that microsatellite genetic markers can be used to assign individual cod from three different populations in the northeastern Atlantic Ocean to their population of origin. PMID:11565021

  7. Decolorization and COD reduction of dyeing wastewater from a cotton textile mill using thermolysis and coagulation.

    PubMed

    Kumar, Pradeep; Prasad, B; Mishra, I M; Chand, Shri

    2008-05-01

    The decolorization and reduction of COD of dyeing wastewater from a cotton textile mill was conducted using catalytic thermal treatment (thermolysis) accompanied with/without coagulation. Thermolysis in presence of a homogeneous copper sulphate catalyst was found to be the most effective in comparison to other catalysts (FeCl(3), FeSO(4), CuO, ZnO and PAC) used. A maximum reduction of chemical oxygen demand (COD) and color of dyeing wastewater of 66.85% and 71.4%, respectively, was observed with a catalyst concentration of 5 kg/m(3) at pH 8. Commercial alum was found most effective coagulant among various coagulants (aluminum potassium sulphate, PAC, FeCl(3) and FeSO(4)) tested during coagulation operations, resulting in 58.57% COD and 74% color reduction at pH 4 and coagulant dose of 5 kg/m(3). Coagulation of the clear fluid (supernatant) obtained after treatment by thermolysis at the conditions previously used resulted in an overall reduction of 89.91% COD and 94.4% color at pH 4 and a coagulant dose of 2 kg/m(3). The application of thermolysis followed by coagulation, thus, is the most effective treatment method in removing nearly 90% COD and 95% color at a lower dose of coagulant (2 kg/m(3)). The sludge thus produced would contain lower inorganic mass coagulant and, therefore, less amount of inorganic sludge. PMID:17931773

  8. 75 FR 56016 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-15

    ... established by the final 2010 and 2011 harvest specifications for groundfish of the GOA (75 FR 11749, March 12... Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod for Processing by the Inshore...; closure. SUMMARY: NMFS is prohibiting directed fishing for Pacific cod by vessels catching Pacific cod...

  9. 75 FR 64956 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-21

    ... established by the final 2010 and 2011 harvest specifications for groundfish of the GOA (75 FR 11749, March 12... Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod for Processing by the Offshore...; closure. SUMMARY: NMFS is prohibiting directed fishing for Pacific cod by vessels catching Pacific cod...

  10. 75 FR 10441 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-08

    ... specifications for groundfish of the GOA (74 FR 7333, February 17, 2010) and inseason adjustment (74 FR 68713... Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod for Processing by the Offshore...; closure. SUMMARY: NMFS is prohibiting directed fishing for Pacific cod by vessels catching Pacific cod...

  11. 75 FR 63402 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-15

    ... established by the final 2010 and 2011 harvest specifications for groundfish of the GOA (75 FR 11749, March 12... Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod for Processing by the Inshore...; closure. SUMMARY: NMFS is prohibiting directed fishing for Pacific cod by vessels catching Pacific cod...

  12. Phenotypic, serological and genetic characterization of Pseudomonas anguilliseptica strains isolated from cod, Gadus morhua L., in northern Europe.

    PubMed

    Balboa, S; Ferguson, H W; Romalde, J L

    2007-11-01

    The biochemical, serological and genetic characteristics of six strains of Pseudomonas anguilliseptica isolated from cod, Gadus morhua, in Scotland were compared to well characterized isolates of this same bacterial species but of different origin. Biochemical and physiological analyses showed that this group of isolates was highly homogeneous, their characteristics matching previous descriptions of the pathogen. Similar results were obtained for the six cod isolates in the serological assays, all of them belonging to the serotype O1. Marked homogeneity was observed also in the genetic study, analysed by means of RAPD, ERIC-PCR and REP-PCR procedures, showing that they were similar to isolates from gilthead seabream, Sparus aurata, black spot seabream, Pagellus bogaraveo, and turbot, Psetta maxima. Virulence assays demonstrated that the cod isolates were highly pathogenic for turbot and sole, Solea senegalensis, with LD50 between 7.6 x 10(4) and 5 x 10(7) bacterial cells per fish. PMID:17958609

  13. Impacts of COD and DCP loading rates on biological treatment of 2,4-dichlorophenol (DCP) containing wastewater in a perforated tubes biofilm reactor.

    PubMed

    Eker, Serkan; Kargi, Fikret

    2006-08-01

    Biofilm processes offer considerable advantages for biological treatment of chlorophenol containing wastewaters since such industrial effluents are difficult to treat by conventional activated sludge processes. A rotating perforated tubes biofilm reactor (RTBR) was developed and used for treatment of 2,4-dichlorophenol (DCP) containing synthetic wastewater. Effects of COD and DCP loading rates on COD, DCP and toxicity removals were investigated. Percent COD removal decreased and effluent COD increased with increasing COD and DCP loading rates due to toxic effects of high DCP content in the feed. DCP and toxicity removals showed similar trends. As the DCP loading rate increased the effluent DCP content increased yielding high toxicity levels in the effluent. COD and DCP loading rates should be below 90gCODm(-2)d(-1) and 2.8gDCPm(-2)d(-1) in order to obtain more than 90% DCP and toxicity removals. However, DCP loading rates lower than 1gDCPm(-2)d(-1) are required to obtain more than 90% COD removal. Empirical equations were developed to estimate percent COD, DCP and toxicity removals as functions of COD and DCP loading rates. The coefficients of the empirical equations were determined by using the experimental data. Empirical model predictions for percent COD, DCP and toxicity removals were in good agreement with the experimental data. PMID:16403418

  14. New England Cod Collapse and the Climate

    PubMed Central

    Meng, Kyle C.; Oremus, Kimberly L.; Gaines, Steven D.

    2016-01-01

    To improve fishery management, there is an increasing need to understand the long-term consequences of natural and anthropogenic climate variability for ecological systems. New England’s iconic cod populations have been in decline for several decades and have recently reached unprecedented lows. We find that 17% of the overall decline in Gulf of Maine cod biomass since 1980 can be attributed to positive phases of the North Atlantic Oscillation (NAO). This is a consequence of three results: i) a 1-unit increase in the NAO winter index is associated with a 17% decrease in the spring biomass of age-1 cod the following year; ii) this NAO-driven decrease persists as the affected cohort matures; iii) fishing practices appear to exacerbate NAO’s direct biological effect such that, since 1913, a 1-unit increase in the NAO index lowers subsequent cod catch for up to 19 years. The Georges Bank cod stock displays similar patterns. Because we statistically detect a delay between the NAO and subsequent declines in adult biomass, our findings imply that observed current NAO conditions can be used in stock forecasts, providing lead time for adaptive policy. More broadly, our approach can inform forecasting efforts for other fish populations strongly affected by natural and anthropogenic climatic variation. PMID:27463967

  15. Upflow anaerobic sludge blanket reduces COD 75-85%, produces methane gas

    SciTech Connect

    Ruppel, W.; Biedron, M.; Thornton, B.; Swientek, R.J.

    1982-01-01

    The wastewater from a brewery at 3 million gallons/day is treated in an upflow anaerobic sludge blanket process with a COD removal efficiency of 75% and the CH/sub 4/ gas content of the 400 cubic metres/day biogas produced 74%.

  16. Once a fast cod, always a fast cod: maintenance of performance hierarchies despite changing food availability in cod (Gadus morhua).

    PubMed

    Martínez, M; Guderley, H; Nelson, J A; Webber, D; Dutil, J-D

    2002-01-01

    To examine whether Atlantic cod maintain constant hierarchies of sprint speeds and muscle metabolic capacities under different feeding regimes, the physiological capacities of individual cod were followed through a starvation-feeding-starvation cycle. We examined sprint speeds and maximal enzyme activities in white-muscle biopsies at each period. We measured the glycolytic enzymes, phosphofructokinase (PFK) and lactate dehydrogenase (LDH), the mitochondrial enzyme, cytochrome C oxidase (CCO), and the biosynthetic enzyme, nucleotide diphosphate kinase (NDPK). Sprint speeds were measured in a laser diode/photocell-timed raceway. As expected, the feeding regime had a marked impact on the physiological capacities of cod, but the responses differed for sprint-swimming and muscle metabolic capacities. The different enzyme activities as well the condition index generally decreased during the first starvation, improved with feeding, and fell again during the second starvation. In contrast, sprint performance improved after feeding but did not fall with the second starvation. Although both the enzyme activities and the sprint speeds showed considerable interindividual variation, sprint speeds were not significantly correlated with the enzyme activities. The hierarchy of sprint performance of the cod was maintained, regardless of the preceding feeding regime, whereas those of muscle metabolic capacities were not. PMID:11880982

  17. Effect of COD/N ratio on nitrogen removal and microbial communities of CANON process in membrane bioreactors.

    PubMed

    Zhang, Xiaojing; Zhang, Hongzhong; Ye, Changming; Wei, Mingbao; Du, Jingjing

    2015-08-01

    In this study, the effect of COD/N ratio on completely autotrophic nitrogen removal over nitrite (CANON) process was investigated in five identical membrane bioreactors. The five reactors were simultaneously seeded for 1L CANON sludge and be operated for more than two months under same conditions, with influent COD/N ratio of 0, 0.5, 1, 2 and 4, respectively. DGGE was used to analyze the microbial communities of aerobic ammonia-oxidizing bacteria (AOB) and anaerobic ammonia-oxidizing bacteria (AAOB) in five reactors. Results revealed the harmonious work of CANON and denitrification with low COD concentration, whereas too high COD concentration suppressed both AOB and AAOB. AOB and AAOB biodiversity both decreased with COD increasing, which then led to worse nitrogen removal. The suppressing threshold of COD/N ratio for CANON was 1.7. CANON was feasible for treating low COD/N sewage, while the high sewage should be converted by anaerobic biogas producing process in advance. PMID:25898093

  18. 44. CAPE COD AIR STATION PAVE PAWS FACILITY BUILDING ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    44. CAPE COD AIR STATION PAVE PAWS FACILITY - BUILDING ELEVATION WITH BUILDING METAL SIDING BEING APPLIED ON "B" FACE. - Cape Cod Air Station, Technical Facility-Scanner Building & Power Plant, Massachusetts Military Reservation, Sandwich, Barnstable County, MA

  19. Benchtop Delivery of Ni(cod)2 using Paraffin Capsules.

    PubMed

    Dander, Jacob E; Weires, Nicholas A; Garg, Neil K

    2016-08-01

    A facile method that allows for Ni(cod)2 to be used on the benchtop is reported. The procedure involves the preparation of paraffin-Ni(cod)2 capsules, which are stable to air and moisture. It is demonstrated that these readily available capsules can be used to promote a range of Ni(cod)2-catalyzed transformations. These studies are expected to promote the further use of Ni(cod)2 in organic synthesis. PMID:27454146

  20. Treatment of high ethanol concentration wastewater by biological sand filters: enhanced COD removal and bacterial community dynamics.

    PubMed

    Rodriguez-Caballero, A; Ramond, J-B; Welz, P J; Cowan, D A; Odlare, M; Burton, S G

    2012-10-30

    Winery wastewater is characterized by its high chemical oxygen demand (COD), seasonal occurrence and variable composition, including periodic high ethanol concentrations. In addition, winery wastewater may contain insufficient inorganic nutrients for optimal biodegradation of organic constituents. Two pilot-scale biological sand filters (BSFs) were used to treat artificial wastewater: the first was amended with ethanol and the second with ethanol, inorganic nitrogen (N) and phosphorus (P). A number of biochemical parameters involved in the removal of pollutants through BSF systems were monitored, including effluent chemistry and bacterial community structures. The nutrient supplemented BSF showed efficient COD, N and P removal. Comparison of the COD removal efficiencies of the two BSFs showed that N and P addition enhanced COD removal efficiency by up to 16%. Molecular fingerprinting of BSF sediment samples using denaturing gradient gel electrophoresis (DGGE) showed that amendment with high concentrations of ethanol destabilized the microbial community structure, but that nutrient supplementation countered this effect. PMID:22683841

  1. 75 FR 64957 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-21

    ... GOA (75 FR 11749, March 12, 2010). In accordance with Sec. 679.20(d)(1)(i), the Administrator, Alaska... Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod for Processing by the Offshore...; closure. ] SUMMARY: NMFS is prohibiting directed fishing for Pacific cod by vessels catching Pacific...

  2. Homogeneous enzyme immunoassay for netilmicin.

    PubMed Central

    Wenk, M; Hemmann, R; Follath, F

    1982-01-01

    A newly developed homogeneous enzyme immunoassay for the determination of netilmicin in serum was evaluated and compared with a radioenzymatic assay. A total of 102 serum samples from patients treated with netilmicin were measured by both methods. This comparison showed an excellent correlation (r = 0.993). The enzyme immunoassay has proved to be precise, accurate, and specific. Because of its rapidity and the ease of performance, this method is a useful alternative to current assays for monitoring serum netilmicin concentrations. PMID:6760807

  3. Cluster synthesis. 38. Formation of high-nuclearity platinum-osmium cluster complexes. Synthesis, structural characterizations, and interrelationships of Pt[sub 4]Os[sub 6](CO)[sub 22](COD), Pt[sub 5]Os[sub 6](CO)[sub 21](COD)[sub 2], Pt[sub 4]Os[sub 6](CO)[sub 19](COD)[sub 2], and Pt[sub 7]Os[sub 6](CO)[sub 21](COD)[sub 2] (COD = cycloocta-1,5-diene)

    SciTech Connect

    Adams, R.D.; Jauching Lii; Wengan Wu )

    1992-06-10

    The chemistry of heteronuclear cluster complexes containing Pt has attracted a great deal of interest becasue of the importance of Pt alloys to the process of catalytic petroleum reforming. Three new high-nuclearity Pt-Os carbonyl cluster complexes Pt[sub 4]Os[sub 6](CO)[sub 22](COD) (2), Pt[sub 5]Os[sub 6](CO)[sub 21](COD)[sub 2] (3), and Pt[sub 4]Os[sub 6](CO)[sub 19](COD)[sub 2] (4) were obtained in 17%, 13%, and 9% yields, respectively, from the pyrolysis of Pt[sub 2]Os[sub 3](CO)[sub 10](COD)[sub 2] (1) under a CO atmosphere at 128C. Compounds 2-4 were characterized by IR, [sup 1]H NMR, and single-crystal X-ray diffraction analyses. Compound 2 consists of two Pt[sub 3]Os[sub 3] octahedra sharing a Pt[sub 3] triangular face. A Pt(COD) group caps one of the Os[sub 3] triangular faces. Compound 3 is structurally similar to compound 2 but has an additional Pt(COD) group capping one of the PtOs[sub 2] triangular faces. The cluster of compound 4 can be viewed as a meta-bicapped Pt[sub 2]Os[sub 4] octahedron with an additional Pt(COD) group capping a PtOs[sub 2] traingle to one of the capping groups on the octahedron and a Pt(COD) group bridging the Pt-Pt edge of the octahedron. Compound 2 was converted to 4 in 65% yield, when it was irradiated in the presence of COD. When compound 2 was treated with 1 equiv of trimethylamine N-oxide and 2 equiv of Pt(COD)[sub 2], compound 3 and a new higher nuclearity platinum-osmium carbonyl complex Pt[sub 7]Os[sub 6](CO)[sub 21](COD)[sub 2] (5; 8% yeild) were obtained. Compound 5 was characterized by a single-crystal X-ray diffraction analysis. It was formed by the loss of one CO from 2 and the addition of three Pt atoms and one COD ligand. Compound 2 was converted to the known compound Pt[sub 4]Os[sub 6](CO)[sub 21](COD)([mu]-H)[sub 2] in good yield (79%) by reacting with trimethylamine N-oxide and hydrogen.

  4. Click sounds produced by cod (Gadus morhua)

    NASA Astrophysics Data System (ADS)

    Vester, Heike I.; Folkow, Lars P.; Blix, A. S.

    2004-02-01

    Conspicuous sonic click sounds were recorded in the presence of cod (Gadus morhua), together with either harp seals (Pagophilus groenlandicus), hooded seals (Cystophora cristata) or a human diver in a pool. Similar sounds were never recorded in the presence of salmon (Salmo salar) together with either seal species, or from either seal or fish species when kept separately in the pool. It is concluded that cod was the source of these sounds and that the clicks were produced only when cod were approached by a swimming predatorlike body. The analyzed click sounds (n=377) had the following characteristics (overall averages +/- S.D.): peak frequency=5.95+/-2.22 kHz peak-to-peak duration=0.70+/-0.45 ms sound pressure level (received level)=153.2+/-7.0 dB re 1 μPa at 1 m. At present the mechanism and purpose of these clicks is not known. However, the circumstances under which they were recorded and some observations on the behavior of the seals both suggest that the clicks could have a predator startling function.

  5. Click sounds produced by cod (Gadus morhua).

    PubMed

    Vester, Heike I; Folkow, Lars P; Blix, A S

    2004-02-01

    Conspicuous sonic click sounds were recorded in the presence of cod (Gadus morhua), together with either harp seals (Pagophilus groenlandicus), hooded seals (Cystophora cristata) or a human diver in a pool. Similar sounds were never recorded in the presence of salmon (Salmo salar) together with either seal species, or from either seal or fish species when kept separately in the pool. It is concluded that cod was the source of these sounds and that the clicks were produced only when cod were approached by a swimming predatorlike body. The analyzed click sounds (n = 377) had the following characteristics (overall averages +/- S.D.): peak frequency = 5.95 +/- 2.22 kHz; peak-to-peak duration = 0.70 +/- 0.45 ms; sound pressure level (received level) = 153.2 +/- 7.0 dB re 1 microPa at 1 m. At present the mechanism and purpose of these clicks is not known. However, the circumstances under which they were recorded and some observations on the behavior of the seals both suggest that the clicks could have a predator startling function. PMID:15000203

  6. Is the Universe homogeneous?

    PubMed

    Maartens, Roy

    2011-12-28

    The standard model of cosmology is based on the existence of homogeneous surfaces as the background arena for structure formation. Homogeneity underpins both general relativistic and modified gravity models and is central to the way in which we interpret observations of the cosmic microwave background (CMB) and the galaxy distribution. However, homogeneity cannot be directly observed in the galaxy distribution or CMB, even with perfect observations, since we observe on the past light cone and not on spatial surfaces. We can directly observe and test for isotropy, but to link this to homogeneity we need to assume the Copernican principle (CP). First, we discuss the link between isotropic observations on the past light cone and isotropic space-time geometry: what observations do we need to be isotropic in order to deduce space-time isotropy? Second, we discuss what we can say with the Copernican assumption. The most powerful result is based on the CMB: the vanishing of the dipole, quadrupole and octupole of the CMB is sufficient to impose homogeneity. Real observations lead to near-isotropy on large scales--does this lead to near-homogeneity? There are important partial results, and we discuss why this remains a difficult open question. Thus, we are currently unable to prove homogeneity of the Universe on large scales, even with the CP. However, we can use observations of the cosmic microwave background, galaxies and clusters to test homogeneity itself. PMID:22084298

  7. Cape Cod, Buzzard's Bay, Massachusetts, USA

    NASA Technical Reports Server (NTRS)

    1990-01-01

    Cape Cod, Massachusetts, USA (42.0N, 70.0W) is a national seashore recreation area with many fine resorts and summer estate homes. Geologically, the cape is a deposit of earth and stone called a terminal moraine, left by the great Pleistocene glaciers of about 20,000 years ago. The through canal at the base of the cape is a manmade feature for waterborne traffic and is part of the Intercoastal Canal network. The cape actually begins south of the canal.

  8. 9 CFR 2.79 - C.O.D. shipments.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 9 Animals and Animal Products 1 2011-01-01 2011-01-01 false C.O.D. shipments. 2.79 Section 2.79... WELFARE REGULATIONS Records § 2.79 C.O.D. shipments. (a) No carrier or intermediate handler shall accept any animal for transportation, in commerce, upon any C.O.D. or other basis where any money is to...

  9. 9 CFR 2.79 - C.O.D. shipments.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 9 Animals and Animal Products 1 2010-01-01 2010-01-01 false C.O.D. shipments. 2.79 Section 2.79... WELFARE REGULATIONS Records § 2.79 C.O.D. shipments. (a) No carrier or intermediate handler shall accept any animal for transportation, in commerce, upon any C.O.D. or other basis where any money is to...

  10. 9 CFR 2.79 - C.O.D. shipments.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ..., on the shipping document and on the copy of the shipping document accompanying the C.O.D. shipment... 9 Animals and Animal Products 1 2013-01-01 2013-01-01 false C.O.D. shipments. 2.79 Section 2.79... WELFARE REGULATIONS Records § 2.79 C.O.D. shipments. (a) No carrier or intermediate handler shall...

  11. 9 CFR 2.79 - C.O.D. shipments.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 9 Animals and Animal Products 1 2014-01-01 2014-01-01 false C.O.D. shipments. 2.79 Section 2.79... WELFARE REGULATIONS Records § 2.79 C.O.D. shipments. (a) No carrier or intermediate handler shall accept any animal for transportation, in commerce, upon any C.O.D. or other basis where any money is to...

  12. 9 CFR 2.79 - C.O.D. shipments.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 9 Animals and Animal Products 1 2012-01-01 2012-01-01 false C.O.D. shipments. 2.79 Section 2.79... WELFARE REGULATIONS Records § 2.79 C.O.D. shipments. (a) No carrier or intermediate handler shall accept any animal for transportation, in commerce, upon any C.O.D. or other basis where any money is to...

  13. Nonstationary homogeneous nucleation

    NASA Technical Reports Server (NTRS)

    Harstad, K. G.

    1974-01-01

    The theory of homogeneous condensation is reviewed and equations describing this process are presented. Numerical computer solutions to transient problems in nucleation (relaxation to steady state) are presented and compared to a prior computation.

  14. Space Radar Image of Cape Cod, Massachusetts

    NASA Technical Reports Server (NTRS)

    1994-01-01

    This spaceborne radar image shows the famous 'hook' of Cape Cod, Massachusetts. The Cape, which juts out into the Atlantic Ocean about 100 kilometers (62 miles) southeast of Boston, actually consists of sandy debris left behind by the great continental ice sheets when they last retreated from southern New England about 20,000 years ago. Today's landscape consists of sandy forests, fields of scrub oak and other bushes and grasses, salt marshes, freshwater ponds, as well as the famous beaches and sand dunes. In this image, thickly forested areas appear green, marshes are dark blue, ponds and sandy areas are black, and developed areas are mostly pink. The dark L-shape in the lower center is the airport runways in Hyannis, the Cape's largest town. The dark X-shape left of the center is Otis Air Force Base. The Cape Cod Canal, above and left of center, connects Buzzards Bay on the left with Cape Cod Bay on the right. The northern tip of the island of Martha's Vineyard is seen in the lower left. The tip of the Cape, in the upper right, includes the community of Provincetown, which appears pink, and the protected National Seashore areas of sand dunes that parallel the Atlantic coast east of Provincetown. Scientists are using radar images like this one to study delicate coastal environments and the effects of human activities on the ecosystem and landscape. This image was acquired by Spaceborne Imaging Radar-C/X-band Synthetic Aperture Radar (SIR-C/X-SAR) onboard the space shuttle Endeavour on April 15, 1994. The image is 81.7 kilometers by 43.1 kilometers (50.7 miles by 26.7 miles) and is centered at 41.8 degrees north latitude, 70.3 degrees west longitude. North is toward the upper right. The colors are assigned to different radar frequencies and polarizations of the radar as follows: red is L-band, horizontally transmitted and received; green is C-band, horizontally transmitted, vertically received; and blue is C-band, horizontally transmitted and received. SIR

  15. 17. CAPE COD AIR STATION PAVE PAWS FACILITY AERIAL VIEW ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    17. CAPE COD AIR STATION PAVE PAWS FACILITY AERIAL VIEW WITH PROJECT NEARING COMPLETION. VIEW SHOWS "A" FACE (LEFT) AND "B" FACE OF RADAR ARRAY SYSTEM. NOTE THAT NORTH IS GENERALLY TO RIGHT OF VIEW. - Cape Cod Air Station, Massachusetts Military Reservation, Sandwich, Barnstable County, MA

  16. 45. CAPE COD AIR STATION PAVE PAWS FACILITY BUILDING ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    45. CAPE COD AIR STATION PAVE PAWS FACILITY - BUILDING ELEVATION VIEW WITH BUILDING METAL SIDING BEING APPLIED ON "A" FACE (LEFT) AND "B" FACE (RIGHT). NOTE THAT NORTH IS GENERALLY TO RIGHT OF VIEW. - Cape Cod Air Station, Technical Facility-Scanner Building & Power Plant, Massachusetts Military Reservation, Sandwich, Barnstable County, MA

  17. 47. CAPE COD AIR STATION PAVE PAWS FACILITY AERIAL VIEW ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    47. CAPE COD AIR STATION PAVE PAWS FACILITY AERIAL VIEW OF "A" FACE (LEFT) WITH CLEANING SYSTEM INSTALLED (NOW REMOVED) AND "B" FACE (RIGHT) WITH CONSTRUCTION CRANE IN USE. - Cape Cod Air Station, Technical Facility-Scanner Building & Power Plant, Massachusetts Military Reservation, Sandwich, Barnstable County, MA

  18. 42. CAPE COD AIR STATION PAVE PAWS FACILITY SHOWING ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    42. CAPE COD AIR STATION PAVE PAWS FACILITY - SHOWING BUILDING "RED IRON" STEEL STRUCTURE AT 46T DAY OF STEEL CONSTRUCTION. "BUILDING TOPPED OFF, 7 JULY, 1974. - Cape Cod Air Station, Technical Facility-Scanner Building & Power Plant, Massachusetts Military Reservation, Sandwich, Barnstable County, MA

  19. 43. CAPE COD AIR STATION PAVE PAWS FACILITY WITH ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    43. CAPE COD AIR STATION PAVE PAWS FACILITY - WITH BUILDING METAL SIDING BEING APPLIED ON "C" FACE (RIGHT) AND "B" FACE BEING PREPARED FOR INSTALLATION. - Cape Cod Air Station, Technical Facility-Scanner Building & Power Plant, Massachusetts Military Reservation, Sandwich, Barnstable County, MA

  20. 46. CAPE COD AIR STATION PAVE PAWS FACILITY BUILDING ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    46. CAPE COD AIR STATION PAVE PAWS FACILITY - BUILDING ELEVATION VIEW WITH ALL METAL SIDING INSTALLED AND WITH EMITTER/ANTENNA ARRAY SYSTEM NEARING OCMPLETION ON "B" FACE (RIGHT). VIEW ALSO SHOWS TRAVELING "CLEANING" SYSTEM ON "B" FACE - NOW REMOVED. - Cape Cod Air Station, Technical Facility-Scanner Building & Power Plant, Massachusetts Military Reservation, Sandwich, Barnstable County, MA

  1. Characterization of bone from red salmon and Pacific cod frames

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The 2008 estimated harvests of Pacific cod and all salmon species from Alaska waters was 207,000 mt and 322,000 mt, respectively. If all the harvest would be processed to boneless fillets it is estimated the amounts of frames produced would be 37,000 mt from cod and 58,000 mt from salmon. There is ...

  2. The effect of organic loading rate on VFA/COD ratio for methane production from an EGSB reactor.

    PubMed

    Wei, Bo; Yuan, Linjiang; Liu, Wenhui

    2015-07-01

    The present study evaluated the effect of organic loading rate (OLR) on VFA/COD ratio for continuous production of methane using an expanded granular sludge bed(EGSB) reactor for 200 d. Reactor performances were studied in treating high OLRs ranging from 4.91 +/- 0.54 to 16.79 +/- 1.62 g-COD l(-1)d(-1) of glucose-based synthetic wastewater in a mesophilic condition. Results showed that performance of anaerobic fermentation system was distinctly influenced by OLR in terms of organic removal efficiency, VFA yield, methane production rate and system stability.Acetic and propionic acids accounted for 80-90% of total VFA, and presented highest VFA concentration and composition of VFA showed minor changes with OLR variation. Moreover, an increase in OLR increased VFA/COD ratio in the whole operation period and high VFA/COD ratio could inhibit methanogenesis at high OLR (16.79 +/- 1.62 g-COD l(-1) d(-1)). PMID:26364485

  3. 75 FR 5541 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-03

    ... harvest specifications for groundfish of the GOA (74 FR 7333, February 17, 2010) and inseason adjustment (74 FR 68713, December 29, 2009). In accordance with Sec. 679.20(d)(1)(i), the Regional Administrator... Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod for Processing by the...

  4. 75 FR 7976 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-23

    ... harvest specifications for groundfish of the GOA (74 FR 7333, February 17, 2010) and inseason adjustment (74 FR 68713, December 29, 2010). In accordance with Sec. 679.20(d)(1)(i), the Regional Administrator... Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod for Processing by the...

  5. 76 FR 63564 - Pacific Cod by Vessels Harvesting Pacific Cod for Processing by the Inshore Component in the...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-10-13

    ... specifications for groundfish of the GOA (76 FR 11111, March 1, 2011). In accordance with Sec. 679.20(d)(1)(i... National Oceanic and Atmospheric Administration 50 CFR Part 679 RIN 0648-XA759 Pacific Cod by Vessels Harvesting Pacific Cod for Processing by the Inshore Component in the Central Regulatory Area of the Gulf...

  6. 75 FR 8839 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-26

    ... harvest specifications for groundfish of the GOA (74 FR 7333, February 17, 2010) and inseason adjustment (74 FR 68713, December 29, 2009). In accordance with Sec. 679.20(d)(1)(i), the Regional Administrator... Economic Zone Off Alaska; Pacific Cod by Vessels Catching Pacific Cod for Processing by the...

  7. 76 FR 59922 - Pacific Cod by Non-American Fisheries Act Crab Vessels Harvesting Pacific Cod for Processing by...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-28

    ... FR 11111, March 1, 2011). ] In accordance with Sec. 680.22(e)(2)(i), the Administrator, Alaska Region... National Oceanic and Atmospheric Administration 50 CFR Part 679 RIN 0648-XA729 Pacific Cod by Non-American Fisheries Act Crab Vessels Harvesting Pacific Cod for Processing by the Inshore Component in the...

  8. 76 FR 80266 - Pacific Cod by Vessels Catching Pacific Cod for Processing by the Inshore Component of the...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-23

    ... under Sec. 679.20(d)(1)(iii) on October 9, 2011 (76 FR 63564, October 13, 2011). As of December 15, 2011... National Oceanic and Atmospheric Administration 50 CFR Part 679 RIN 0648-XA886 Pacific Cod by Vessels Catching Pacific Cod for Processing by the Inshore Component of the Central Regulatory Area of the Gulf...

  9. 76 FR 58414 - Pacific Cod by Non-American Fisheries Act Crab Vessels Harvesting Pacific Cod for Processing by...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-21

    ... FR 11111, March 1, 2011). In accordance with Sec. 680.22(e)(2)(i), the Administrator, Alaska Region... National Oceanic and Atmospheric Administration 50 CFR Part 679 RIN 0648-XA715 Pacific Cod by Non-American Fisheries Act Crab Vessels Harvesting Pacific Cod for Processing by the Inshore Component in the...

  10. Homogenization of precipitation time series with ACMANT

    NASA Astrophysics Data System (ADS)

    Domonkos, Peter

    2015-10-01

    New method for the time series homogenization of observed precipitation (PP) totals is presented; this method is a unit of the ACMANT software package. ACMANT is a relative homogenization method; minimum four time series with adequate spatial correlations are necessary for its use. The detection of inhomogeneities (IHs) is performed with fitting optimal step function, while the calculation of adjustment terms is based on the minimization of the residual variance in homogenized datasets. Together with the presentation of PP homogenization with ACMANT, some peculiarities of PP homogenization as, for instance, the frequency and seasonal variation of IHs in observed PP data and their relation to the performance of homogenization methods are discussed. In climatic regions of snowy winters, ACMANT distinguishes two seasons, namely, rainy season and snowy season, and the seasonal IHs are searched with bivariate detection. ACMANT is a fully automatic method, is freely downloadable from internet and treats either daily or monthly input. Series of observed data in the input dataset may cover different periods, and the occurrence of data gaps is allowed. False zero values instead of missing data code or physical outliers should be corrected before running ACMANT. Efficiency tests indicate that ACMANT belongs to the best performing methods, although further comparative tests of automatic homogenization methods are needed to confirm or reject this finding.

  11. Behavioral responses of Atlantic cod to sea temperature changes

    PubMed Central

    Freitas, Carla; Olsen, Esben Moland; Moland, Even; Ciannelli, Lorenzo; Knutsen, Halvor

    2015-01-01

    Understanding responses of marine species to temperature variability is essential to predict impacts of future climate change in the oceans. Most ectotherms are expected to adjust their behavior to avoid extreme temperatures and minimize acute changes in body temperature. However, measuring such behavioral plasticity in the wild is challenging. Combining 4 years of telemetry-derived behavioral data on juvenile and adult (30–80 cm) Atlantic cod (Gadus morhua), and in situ ocean temperature measurements, we found a significant effect of sea temperature on cod depth use and activity level in coastal Skagerrak. During summer, cod were found in deeper waters when sea surface temperature increased. Further, this effect of temperature was stronger on larger cod. Diel vertical migration, which consists in a nighttime rise to shallow feeding habitats, was stronger among smaller cod. As surface temperature increased beyond ∼15°C, their vertical migration was limited to deeper waters. In addition to larger diel vertical migrations, smaller cod were more active and travelled larger distances compared to larger specimens. Cold temperatures during winter tended, however, to reduce the magnitude of diel vertical migrations, as well as the activity level and distance moved by those smaller individuals. Our findings suggest that future and ongoing rises in sea surface temperature may increasingly deprive cod in this region from shallow feeding areas during summer, which may be detrimental for local populations of the species. PMID:26045957

  12. Temporal trends of contaminants in cod from Icelandic waters.

    PubMed

    Sturludottir, Erla; Gunnlaugsdottir, Helga; Jorundsdottir, Hronn O; Magnusdottir, Elin V; Olafsdottir, Kristin; Stefansson, Gunnar

    2014-04-01

    Contaminants have been analyzed in cod (Gadus morhua) since 1990 as part of the national monitoring program for the environmental conditions in the sea around Iceland. The aim of this study was to determine the temporal trends of persistent organic pollutants (POPs: polychlorinated biphenyls (PCBs), p,p'-dichlorodiphenyl dichloroethene (p,p'-DDE), hexachlorobenzene (HCB), hexachlorocyclohexanes (HCHs), chlordanes (CHLs) and toxaphenes (Tox)) and trace elements (As, Cd, Cu, Hg, Pb, Se and Zn) in cod over the last two decades at two different locations in the Arctic Ocean north of Iceland. The relationship between the contaminant concentrations and biological covariates was also determined. All of the POPs showed decreasing trends but the trace elements showed no clear signs of trend except arsenic which showed an increasing trend and zinc which showed a decreasing trend. The concentration of the POPs were lower or similar in the Icelandic cod compared to cod sampled in Norway, the Barents Sea and in the Baltic Sea, except for HCB which was higher in the Icelandic cod compared to the Norwegian cod. The concentration of the trace elements As, Cu, Hg and Zn were similar in the Icelandic cod compared to cod sampled in Norway and Greenland but the concentration of Cd was higher in the Icelandic cod. The inclusion of the biological covariates was found to be important for the statistical analysis. The POPs had a positive relationship with liver fat content but negative relationship with liver weight. The trace elements had a negative relationship with liver fat and liver weight except As which had positive relationship with liver weight. Only positive relationships were observed between the contaminant concentrations and length. PMID:24463254

  13. Homogeneity and Entropy

    NASA Astrophysics Data System (ADS)

    Tignanelli, H. L.; Vazquez, R. A.; Mostaccio, C.; Gordillo, S.; Plastino, A.

    1990-11-01

    RESUMEN. Presentamos una metodologia de analisis de la homogeneidad a partir de la Teoria de la Informaci6n, aplicable a muestras de datos observacionales. ABSTRACT:Standard concepts that underlie Information Theory are employed in order design a methodology that enables one to analyze the homogeneity of a given data sample. Key : DATA ANALYSIS

  14. Transcriptome profiling of the antiviral immune response in Atlantic cod macrophages.

    PubMed

    Eslamloo, Khalil; Xue, Xi; Booman, Marije; Smith, Nicole C; Rise, Matthew L

    2016-10-01

    A study was conducted to determine the transcriptome response of Atlantic cod (Gadus morhua) macrophages to the viral mimic, polyriboinosinic polyribocytidylic acid (pIC), using a 20K Atlantic cod microarray platform and qPCR. We identified 285 significantly up-regulated and 161 significantly down-regulated probes in cod macrophages 24 h after pIC stimulation. A subset of 26 microarray-identified transcripts was subjected to qPCR validation using samples treated with pIC or phosphate-buffered saline (control) over time (3, 6, 12, 24, 48 h), and 77% of them showed a significant response to pIC. The microarray and qPCR analyses in this study showed that pIC induced the expression of cod macrophage transcripts involved in RLR- and TLR-dependent pathogen recognition (e.g. tlr3, tlr7, mda5 and lgp2), as well as signal transducers (e.g. stat1 and nfkbia) and transcription activators (e.g. irf7 and irf10) in the MyD88-independent and dependent signalling pathways. Several immune effectors (e.g. isg15s, viperin, herc4, mip2 and ccl13) were significantly up-regulated in pIC-stimulated cod macrophages. The expression of some transcripts (e.g. irf7, irf10, viperin) was significantly up-regulated by pIC as early as 12 h. All pIC-induced transcripts had peak expression at either 24 h (e.g. tlr7, irf7, mip2) or 48 h (e.g. tlr3, lgp2, stat1). This study suggests possible roles of both vertebrate-conserved (e.g. tlr3 as an up-regulated gene) and fish-specific (tlr22g as a down-regulated gene) receptors in dsRNA recognition, and the importance of conserved and potentially fish-specific interferon stimulated genes in cod macrophages. PMID:27255218

  15. Effect of photochemical pre-treatment on COD fractionation of a non-ionic textile surfactant.

    PubMed

    Cokgor, E U; Arsian-Alaton, I; Erdinc, E; Insel, G; Orhon, D

    2007-01-01

    The work presented in this paper is focused on the effect of photochemical (H2O2/UV-C) pretreatment on COD fractionation and degradation kinetics of a non-ionic textile surfactant. In the first part of the study, the COD of non-ionic surfactant was adjusted to 1000 mg/L in order to simulate real effluent originating from the textile preparation stage featuring desizing, scouring, washing and rinsing operations. The surfactant was subjected to H2O2/UV-C pretreatment for up to 120 min at a dose of 30 mM (980 mg/L) H2O2. The biodegradability studies for untreated and photochemically treated samples were evaluated on the basis of modeling of oxygen uptake rate (OUR) profiles. Modelling of OUR profiles conducted for untreated sample showed that single complex substrate was subjected to enzymatic breakdown and disintegrated into one readily and two types of slowly biodegradable substrates. After modelling the biodegradation of photochemically pretreated sample, the readily biodegradable COD fraction was reduced, on the other hand, more slowly biodegradable organics were generated. A higher disintegration rate was obtained for chemically pretreated samples. However, other kinetic constants of growth and hydrolysis processes were not affected considerably. PMID:17564381

  16. Strictly homogeneous laterally complete modules

    NASA Astrophysics Data System (ADS)

    Chilin, V. I.; Karimov, J. A.

    2016-03-01

    Let A be a laterally complete commutative regular algebra and X be a laterally complete A-module. In this paper we introduce a notion of homogeneous and strictly homogeneous A-modules. It is proved that any homogeneous A-module is strictly homogeneous A-module, if the Boolean algebra of all idempotents in A is multi-σ-finite.

  17. Cod Collapse and the Climate in the North Atlantic

    NASA Astrophysics Data System (ADS)

    Meng, K. C.; Oremus, K. L.; Gaines, S.

    2014-12-01

    Effective fisheries management requires forecasting population changes. We find a negative relationship between the North Atlantic Oscillation (NAO) index and subsequently surveyed biomass and catch of Atlantic cod, Gadus morhua, off the New England coast. A 1-unit NAO increase is associated with a 17% decrease in surveyed biomass of age-1 cod the following year. This relationship persists as the cod mature, such that observed NAO can be used to forecast future adult biomass. We also document that an NAO event lowers catch for up to 15 years afterward. In contrast to forecasts by existing stock assessment models, our NAO-driven statistical model successfully hindcasts the recent collapse of New England cod fisheries following strong NAO events in 2007 and 2008 (see figure). This finding can serve as a template for forecasting other fisheries affected by climatic conditions.

  18. Influence of mechanical disintegration on the microbial growth of aerobic sludge biomass: A comparative study of ultrasonic and shear gap homogenizers by oxygen uptake measurements.

    PubMed

    Divyalakshmi, P; Murugan, D; Sivarajan, M; Saravanan, P; Lajapathi Rai, C

    2015-11-01

    Wastewater treatment plant incorporates physical, chemical and biological processes to treat and remove the contaminants. The main drawback of conventional activated sludge process is the huge production of excess sludge, which is an unavoidable byproduct. The treatment and disposal of excess sludge costs about 60% of the total operating cost. The ideal way to reduce excess sludge production during wastewater treatment is by preventing biomass formation within the aerobic treatment train rather than post treatment of the generated sludge. In the present investigation two different mechanical devices namely, Ultrasonic and Shear Gap homogenizers have been employed to disintegrate the aerobic biomass. This study is intended to restrict the multiplication of microbial biomass and at the same time degrade the organics present in wastewater by increasing the oxidative capacity of microorganisms. The disintegrability on biomass was determined by biochemical methods. Degree of inactivation provides the information on inability of microorganisms to consume oxygen upon disruption. The soluble COD quantifies the extent of release of intra cellular compounds. The participation of disintegrated microorganism in wastewater treatment process was carried out in two identical respirometeric reactors. The results show that Ultrasonic homogenizer is very effective in the disruption of microorganisms leading to a maximum microbial growth reduction of 27%. On the other hand, Shear gap homogenizer does not favor the sludge growth reduction rather it facilitates the growth. This study also shows that for better microbial growth reduction, floc size reduction alone is not sufficient but also microbial disruption is essential. PMID:25866205

  19. Monitoring the desalting process of cod using dielectric spectroscopy.

    PubMed

    De los Reyes, Ruth; Balbastre, Juan V; Andrés, Ana; Fito, Pedro; De los Reyes, Elias

    2009-01-01

    The desalted cod industry needs a suitable and reliable control system to check the desalting point of cod in order to provide a safe and high-quality product. The growth of the industries that are interested in a non-contacting, real-time control, encourages the development of new methods based on low-power radiation, such as dielectric spectroscopy. These techniques use the modification of wave parameters at some specific frequencies to provide information of the compositional characteristics of foods. In this work, cod parallelepipeds were desalted at 5 degrees C by immersing them in distilled water for different desalting times (15 and 30 minutes and 1, 2, 4, 6, 8, 12, 24 and 48 hours). Dielectric Spectroscopy studies have been performed on cod samples in the frequency range 200 MHz-20 GHz. The dielectric properties were measured using a coaxial probe (Agilent 85070E) connected to a Network Analyzer (Agilent E8362B) immediately after removing the cod samples from their desalting solutions. After desalting, the cod samples were separated from their desalting solutions and kept in repose for 24 h at 5 degrees C after which some of their physical properties were measured. This experimental procedure ensures that those properties have already reached their final values. Good correlations were found between the quality properties of the cod samples (a(w), Xw, Z(NaCl) and xNaCl) after 24 h and their loss factor (epsilon") measured at 10 GHz just before leaving them in repose, showing the feasibility of an in-line control system for cod desalting process at that frequency. PMID:21384709

  20. 36 CFR 7.67 - Cape Cod National Seashore.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 36 Parks, Forests, and Public Property 1 2011-07-01 2011-07-01 false Cape Cod National Seashore. 7.67 Section 7.67 Parks, Forests, and Public Property NATIONAL PARK SERVICE, DEPARTMENT OF THE INTERIOR SPECIAL REGULATIONS, AREAS OF THE NATIONAL PARK SYSTEM § 7.67 Cape Cod National Seashore. (a) Off-road operation of motor vehicles. (1) What do...

  1. Homogeneous and inhomogeneous eddies

    SciTech Connect

    Pavia, E.G.

    1994-12-31

    This work deals with mesoscale warm oceanic eddies; i.e., self-contained bodies of water which transport heat, among other things, for several months and for several hundreds of kilometers. This heat transport is believed to play an important role in the atmospheric and oceanic conditions of the region where it is being transported. Here the author examines the difference in evolution between eddies modeled as blobs of homogeneous water and eddies in which density varies in the horizontal. Preliminary results suggest that instability is enhanced by inhomogeneities, which would imply that traditional modeling studies, based on homogeneous vortices have underestimated the rate of heat-release from oceanic eddies to the surroundings. The approach is modeling in the simplest form; i.e., one single active layer. Although previous studies have shown the drastic effect on stability brought by two or more dynamically-relevant homogeneous layers, the author believes the single-layer eddy-model has not been investigated thoroughly.

  2. Antiulcer activity of cod liver oil in rats

    PubMed Central

    Khare, Salaj; Asad, Mohammed; Dhamanigi, Sunil S.; Prasad, V. Satya

    2008-01-01

    Objective: Cod liver oil is used widely as a dietary supplement. The present study was carried out to evaluate the effect of cod liver oil (0.5 g/kg, p.o. and 1 g/kg, p.o.) on gastric and duodenal ulcers. Materials and Methods: The study was carried out on different gastric ulcer models such as acetic acid induced chronic gastric ulcers, pylorus ligation, indomethacin induced ulcers, stress induced ulcers and ethanol induced ulcers. The duodenal ulcers were induced using cysteamine hydrochloride (HCl). Ranitidine (50 mg/kg p.o.) and misoprostol (100 µg/kg, p.o.) were used as standard drugs. Results: Both doses of cod liver oil showed gastric ulcer healing effect in acetic acid induced chronic gastric ulcers, produced gastric antisecretory effect in pylorus-ligated rats and also showed gastric cytoprotective effect in ethanol-induced and indomethacin-induced ulcer. Cod liver oil also produced a significant reduction in the development of stress induced gastric ulcers and cysteamine induced duodenal ulcer. The high dose of cod liver oil (1 g/kg, p.o.) was more effective compared to the low dose (0.5 g/kg, p.o.). Conclusion: Cod liver oil increases healing of gastric ulcers and prevents the development of experimentally induced gastric and duodenal ulcers in rats. PMID:20040959

  3. Food web dynamics affect Northeast Arctic cod recruitment

    PubMed Central

    Hjermann, Dag Ø; Bogstad, Bjarte; Eikeset, Anne Maria; Ottersen, Geir; Gjøsæter, Harald; Stenseth, Nils Chr

    2006-01-01

    Proper management of ecosystems requires an understanding of both the species interactions as well as the effect of climate variation. However, a common problem is that the available time-series are of different lengths. Here, we present a general approach for studying the dynamic structure of such interactions. Specifically, we analyse the recruitment of the world's largest cod stock, the Northeast Arctic cod. Studies based on data starting in the 1970–1980s indicate that this stock is affected by temperature through a variety of pathways. However, the value of such studies is somewhat limited by the fact that they are based on a quite specific ecological and climatic situation. Recently, this stock has consisted of fairly young fish and the spawning stock has consisted of relatively few age groups. In this study, we develop a model for the effect of capelin (the cod's main prey) and herring on cod recruitment since 1973. Based on this model, we analyse data on cod, herring and temperature going back to 1921 and find that food-web effects explain a significant part of the cod recruitment variation back to around 1950. PMID:17254990

  4. Correlation between microbiota and growth in Mangrove Killifish (Kryptolebias marmoratus) and Atlantic cod (Gadus morhua).

    PubMed

    Forberg, Torunn; Sjulstad, Eli Bjørnø; Bakke, Ingrid; Olsen, Yngvar; Hagiwara, Atsushi; Sakakura, Yoshitaka; Vadstein, Olav

    2016-01-01

    The vertebrate gut is host to large communities of bacteria, and one of the beneficial contributions of this commensal gut microbiota is the increased nutritional gain from feed components that the host cannot degrade on its own. Fish larvae of similar age and under the same rearing conditions often diverge with regards to growth. The underlying reasons for this could be differences in genetic background, feeding behavior or digestive capacity. Both feeding behavior and digestion can be influenced by differences in the microbiota. To investigate possible correlations between the size of fish larvae and their gut microbiota, we analyzed the microbiota small and large genetically homogenous killifish and genetically heterogeneous cod larvae by Bray-Curtis Similarity measures of 16S DNA DGGE patterns. A significant difference in richness (p = 0.037) was observed in the gut microbiota of small and large killifish, but the overall gut microbiota was not found to be significantly different (p = 0.13), indicating strong genetic host selection on microbiota composition at the time of sampling. The microbiota of small and large cod larvae was significantly different with regards to evenness and diversity (p = 0.0001), and a strong correlation between microbiota and growth was observed. PMID:26875510

  5. Correlation between microbiota and growth in Mangrove Killifish (Kryptolebias marmoratus) and Atlantic cod (Gadus morhua)

    PubMed Central

    Forberg, Torunn; Sjulstad, Eli Bjørnø; Bakke, Ingrid; Olsen, Yngvar; Hagiwara, Atsushi; Sakakura, Yoshitaka; Vadstein, Olav

    2016-01-01

    The vertebrate gut is host to large communities of bacteria, and one of the beneficial contributions of this commensal gut microbiota is the increased nutritional gain from feed components that the host cannot degrade on its own. Fish larvae of similar age and under the same rearing conditions often diverge with regards to growth. The underlying reasons for this could be differences in genetic background, feeding behavior or digestive capacity. Both feeding behavior and digestion can be influenced by differences in the microbiota. To investigate possible correlations between the size of fish larvae and their gut microbiota, we analyzed the microbiota small and large genetically homogenous killifish and genetically heterogeneous cod larvae by Bray-Curtis Similarity measures of 16S DNA DGGE patterns. A significant difference in richness (p = 0.037) was observed in the gut microbiota of small and large killifish, but the overall gut microbiota was not found to be significantly different (p = 0.13), indicating strong genetic host selection on microbiota composition at the time of sampling. The microbiota of small and large cod larvae was significantly different with regards to evenness and diversity (p = 0.0001), and a strong correlation between microbiota and growth was observed. PMID:26875510

  6. HOMOGENEOUS NUCLEAR POWER REACTOR

    DOEpatents

    King, L.D.P.

    1959-09-01

    A homogeneous nuclear power reactor utilizing forced circulation of the liquid fuel is described. The reactor does not require fuel handling outside of the reactor vessel during any normal operation including complete shutdown to room temperature, the reactor being selfregulating under extreme operating conditions and controlled by the thermal expansion of the liquid fuel. The liquid fuel utilized is a uranium, phosphoric acid, and water solution which requires no gus exhaust system or independent gas recombining system, thereby eliminating the handling of radioiytic gas.

  7. Reduction of COD in leachate from a hazardous waste landfill adjacent to a coke-making facility

    SciTech Connect

    Banerjee, K.; O`Toole, T.J.

    1995-12-01

    A hazardous waste landfill adjacent to a coke manufacturing facility was in operation between July 1990 and December 1991. A system was constructed to collect and treat the leachate from the landfill prior to discharge to the river. Occasionally, the discharge from the treatment facility exceeded the permit limitations for Chemical Oxygen Demand (COD), Biochemical Oxygen Demand (BOD), and Total Organic Carbon (TOC). The objectives of this study were to determine treatment methods which would enable compliance with the applicable discharge limits; to establish the desired operating conditions of the process; and to investigate the effect of various parameters such as pH, catalyst dosage, and reaction time on the COD destruction efficiency. The characteristics of the landfill leachate in question were significantly variable in terms of chemical composition. A review of the influent quality data suggests that the COD concentration ranges between 80 and 390 mg/l. The oxidation processes using Fenton`s reagent or a combination of UV/hydrogen peroxide/catalyst are capable of reducing the COD concentration of the leachate below the discharge limitation of 35 mg/l. The estimated capital cost associated with the Fenton`s reagent process is approximately $525,000, and the annual operating and maintenance cost is $560,000. The estimated capital cost for the UV/hydrogen peroxide/catalyst treatment system is $565,000. The annual operating and maintenance cost of this process would be approximately $430,000.

  8. Differences in soluble COD and ammonium when applying inverted phase fermentation to primary, secondary and mixed sludge.

    PubMed

    Negral, L; Marañón, E; Castrillón, L; Fernández-Nava, Y

    2015-01-01

    Primary, secondary and mixed sludge were treated by inverted phase fermentation. This treatment results in solid-liquid separation of sludge after endogenous enzymatic hydrolysis (anaerobic conditions: 42°C, 48 hours). The soluble chemical oxygen demand (sCOD) was increased in the solid phase up to 1,800%, 21,300% and 260% in primary, secondary and mixed sludge, respectively. The corresponding increase in sCOD in the liquid phase accordingly reached values of up to 440%, 5,100% and 140%. Phase separation led to an enrichment of volatile solids in the solid phase (89-358% primary sludge, 80-102% secondary sludge and 29-133% mixed sludge). The NH4+-N values increased notably after the endogenous enzymatic hydrolysis itself. To investigate the short-term evolution following the treatment, the variation in sCOD, NH4+-N and solids was also monitored after keeping the hydrolysate at 37°C under anaerobic conditions for 24 hours. This stage showed no generalized pattern in terms of sCOD. PMID:26465310

  9. Mathematical modeling of COD removal via the combined treatment of domestic wastewater and landfill leachate based on the PACT process.

    PubMed

    Fernández Bou, Ángel S; Nascentes, Alexandre Lioi; Costa Pereira, Barbara; Da Silva, Leonardo Duarte Batista; Alberto Ferreira, João; Campos, Juacyara Carbonelli

    2015-01-01

    The experiments performed in this study consisted of 16 batch reactors fed different mixtures of landfill leachate combined with synthetic wastewater treated using the Powdered Activated Carbon Treatment (PACT) process. The objective was to measure the COD mass removal per liter each day for each reactor using two models: the first model combined the variables PAC concentration (0 g·L(-1), 2 g·L(-1), 4 g·L(-1), and 6 g·L(-1)) and leachate rate in the wastewater (0%, 2%, 5%, and 10%), and the second model combined the PAC concentration and the influent COD. The Response Surface Methodology with Central Composite Design was used to describe the response surface of both models considered in this study. Domestic wastewater was produced under controlled conditions in the laboratory where the experiments were performed. The results indicated that the PAC effect was null when the influent did not contain leachate; however, as the concentration of leachate applied to the mixture was increased, the addition of a higher PAC concentration resulted in a better COD mass removal in the reactors. The adjusted R(2) values of the two models were greater than 0.95, and the predicted R(2) values were greater than 0.93. The models may be useful for wastewater treatment companies to calculate PAC requirements in order to meet COD mass removal objectives in combined treatment. PMID:25723064

  10. [Simultaneously removal of COD, nitrogen and phosphorus from wastewater by coupling treatment system with immobilized algae-bacteria].

    PubMed

    Deng, Xu; Wei, Bin; Hu, Zhang-Li

    2011-08-01

    A coupling treatment system was developed by employing immobilized Chlamydomonas reinhardti and activated sludge to simultaneously remove COD, nitrogen and phosphorus from wastewater. The amount of wastewater treated by the system was 6 m3 per day, and hydraulic retention time was 12 h. For activated sludge section, as stirring rate of anaerobic tank was 15 r x min(-1) and DO value of aerobic tank was 5 mg x L(-1), COD decreased from about 150 mg x L(-1) to 50 mg x L(-1) and NH4+-N from 20-30 mg x L(-1) to 0.5 mg x L(-1), whereas TP only dropped from 2-3 mg x L(-1) to 1.0 mg x L(-1). For immobilized C. reinhardti section, the suitable conditions were: DO 5 mg x L(-1), illumination intensity 2000 lx, the loading ratio of immobilization pellets 20%, respectively. Under the appropriate conditions of the coupling treatment system, COD, NH4+-N and TP of the effluent were about 15 mg x L(-1), 0.5 mg x L(-1) and 0.5 mg x L(-1), respectively. During 2 months period of continuous treatment, COD, NH4+-N and TP of the effluent kept fairly constant, showing the stability of the coupling wastewater treatment system. PMID:22619955

  11. Effects of climate change on the survival of larval cod

    NASA Astrophysics Data System (ADS)

    Kristiansen, T.; Stock, C. A.; Drinkwater, K. F.; Curchitser, E. N.

    2011-12-01

    Understanding how climate change may impact important commercial fisheries is critical for developing sustainable fisheries management strategies. In this study, we used simulations from an Earth System Model (NOAA GFDL ESM2.1) coupled with an individual-based model (IBM) for larval fish to provide a first assessment of the potential importance of climate-change driven changes in primary productivity and temperature on cod recruitment in the North Atlantic to the year 2100. ESM model output was averaged for 5 regions, each with an area of 5x5 on a latitude-longitude grid, and representing the geographic boundaries of the current cod range. The physical and environmental data were incorporated into a mechanistic IBM used to simulate the critical early phases in the life of larval fish (e.g. cod) in a changing environment. Large phytoplankton production was predicted to decrease in most regions, thereby lowering the number of meso-zooplankton in the water column. Meso-zooplankton is the most important prey item for larval cod and a reduction in their numbers have strong impacts on larval cod survival. The combination of lowered prey abundance with increased energy requirement for growth and metabolism through increased temperature had a negative impact on cod recruitment in all modeled regions of the North Atlantic. The probability of survival past the larval stages was reduced with 20-30% at all five spawning grounds by the year 2100. Together, these results suggest climate change could have significant impacts on the survival of larval cod in the North Atlantic.

  12. Application of microbial electrolysis cells to treat spent yeast from an alcoholic fermentation.

    PubMed

    Sosa-Hernández, Ornella; Popat, Sudeep C; Parameswaran, Prathap; Alemán-Nava, Gibrán Sidney; Torres, César I; Buitrón, Germán; Parra-Saldívar, Roberto

    2016-01-01

    Spent yeast (SY), a major challenge for the brewing industry, was treated using a microbial electrolysis cell to recover energy. Concentrations of SY from bench alcoholic fermentation and ethanol were tested, ranging from 750 to 1500mgCOD/L and 0 to 2400mgCOD/L respectively. COD removal efficiency (RE), coulombic efficiency (CE), coulombic recovery (CR), hydrogen production and current density were evaluated. The best treatment condition was 750mgCOD/LSY+1200mgCOD/L ethanol giving higher COD RE, CE, CR (90±1%, 90±2% and 81±1% respectively), as compared with 1500mgCOD/LSY (76±2%, 63±7% and 48±4% respectively); ethanol addition was significantly favorable (p value=0.011), possibly due to electron availability and SY autolysis. 1500mgCOD/LSY+1200mgCOD/L ethanol achieved higher current density (222.0±31.3A/m(3)) and hydrogen production (2.18±0.66 [Formula: see text] ) but with lower efficiencies (87±2% COD RE, 71.0±.4% CE). Future work should focus on electron sinks, acclimation and optimizing SY breakdown. PMID:26512857

  13. Petrology and U-Pb geochronology of buried Avalonian plutonic rocks on southeastern Cape Cod

    USGS Publications Warehouse

    Leo, G.W.; Mortensen, J.K.; Barreiro, B.; Phillips, J.D.

    1993-01-01

    Plutonic rocks have been intersected by two separate drill holes on souteastern Cape Cod. Hole CC2 is located about 7 km south of the Nauset anomaly, an east-northeast-trending magnetic lineament that was considered to separate the distinct plutonic zones of Avalon terrane. This drill hole intersected weakly foliated, fairly homogeneous biotite granite. Zircons from this granite give a U-Pb age of 584+9/-8 Ma. Hole CC1 is located about 12 km north of the Nauset anomaly. The drill core intersected foliated, sheared, biotite granodiorite and biotite-hornblende-clinopyroxene-quartz gabbro, metamorphosed to greenschist facies. The deformed and altered state of these rocks, as well as their geochemistry, suggest that their origin and possibly their ages are distinct from the granite in hole CC2. No datable zircons were obtained from rocks in CC1. -from Authors

  14. A non-asymptotic homogenization theory for periodic electromagnetic structures

    PubMed Central

    Tsukerman, Igor; Markel, Vadim A.

    2014-01-01

    Homogenization of electromagnetic periodic composites is treated as a two-scale problem and solved by approximating the fields on both scales with eigenmodes that satisfy Maxwell's equations and boundary conditions as accurately as possible. Built into this homogenization methodology is an error indicator whose value characterizes the accuracy of homogenization. The proposed theory allows one to define not only bulk, but also position-dependent material parameters (e.g. in proximity to a physical boundary) and to quantify the trade-off between the accuracy of homogenization and its range of applicability to various illumination conditions. PMID:25104912

  15. Homogeneous quantum electrodynamic turbulence

    NASA Technical Reports Server (NTRS)

    Shebalin, John V.

    1992-01-01

    The electromagnetic field equations and Dirac equations for oppositely charged wave functions are numerically time-integrated using a spatial Fourier method. The numerical approach used, a spectral transform technique, is based on a continuum representation of physical space. The coupled classical field equations contain a dimensionless parameter which sets the strength of the nonlinear interaction (as the parameter increases, interaction volume decreases). For a parameter value of unity, highly nonlinear behavior in the time-evolution of an individual wave function, analogous to ideal fluid turbulence, is observed. In the truncated Fourier representation which is numerically implemented here, the quantum turbulence is homogeneous but anisotropic and manifests itself in the nonlinear evolution of equilibrium modal spatial spectra for the probability density of each particle and also for the electromagnetic energy density. The results show that nonlinearly interacting fermionic wave functions quickly approach a multi-mode, dynamic equilibrium state, and that this state can be determined by numerical means.

  16. HOMOGENEOUS NUCLEAR REACTOR

    DOEpatents

    Hammond, R.P.; Busey, H.M.

    1959-02-17

    Nuclear reactors of the homogeneous liquid fuel type are discussed. The reactor is comprised of an elongated closed vessel, vertically oriented, having a critical region at the bottom, a lower chimney structure extending from the critical region vertically upwardly and surrounded by heat exchanger coils, to a baffle region above which is located an upper chimney structure containing a catalyst functioning to recombine radiolyticallydissociated moderator gages. In operation the liquid fuel circulates solely by convection from the critical region upwardly through the lower chimney and then downwardly through the heat exchanger to return to the critical region. The gases formed by radiolytic- dissociation of the moderator are carried upwardly with the circulating liquid fuel and past the baffle into the region of the upper chimney where they are recombined by the catalyst and condensed, thence returning through the heat exchanger to the critical region.

  17. Homogeneous quantum electrodynamic turbulence

    SciTech Connect

    Shebalin, J.V.

    1992-10-01

    The electromagnetic field equations and Dirac equations for oppositely charged wave functions are numerically time-integrated using a spatial Fourier method. The numerical approach used, a spectral transform technique, is based on a continuum representation of physical space. The coupled classical field equations contain a dimensionless parameter which sets the strength of the nonlinear interaction (as the parameter increases, interaction volume decreases). For a parameter value of unity, highly nonlinear behavior in the time-evolution of an individual wave function, analogous to ideal fluid turbulence, is observed. In the truncated Fourier representation which is numerically implemented here, the quantum turbulence is homogeneous but anisotropic and manifests itself in the nonlinear evolution of equilibrium modal spatial spectra for the probability density of each particle and also for the electromagnetic energy density. The results show that nonlinearly interacting fermionic wave functions quickly approach a multi-mode, dynamic equilibrium state, and that this state can be determined by numerical means.

  18. COD measurement based on the integrated liquid drop sensor

    NASA Astrophysics Data System (ADS)

    Qiu, Zurong; Zhang, Guoxiong; Song, Qing; Xu, Jian

    2005-02-01

    A study on Chemical Oxygen Demand (COD) measuring method is reported, in which the COD value is measured by an integrated liquid drop monitor sensor without any reagent and chemical treatment. The integrated drop sensor consists of a liquid head, an integrated fiber sensor and a capacitor sensor. The capacitor sensor is composed of a drop head and a ring electrode. As the part of the drop head, the outline of the drop will be changed during the drop forming, which result in the variation of the capacitance. The fiber sensor is composed of two fibers that are positioned into the liquid drop. The light signal goes into the liquid drop from one fiber and out from the other one. A unique fingerprint of the liquid drop can be got by the data processing. The matching between the COD value of a liquid and the codes of the fingerprints in the database are presented and discussed.

  19. The complete mitochondrial genome of the sleepy cod (Oxyeleotris lineolatus).

    PubMed

    Chen, Haigang; Li, Wei; Zhao, Jian; Zhu, Xinping

    2016-07-01

    The complete mitochondrial genome of the sleepy cod (Oxyeleotris lineolatus) is determined for the first time in this study. It is a circular molecule of 16,519 bp in length, consisting 37 genes, typically found in other vertebrates. The AT content of the overall base composition of the whole mitogenome was 53.90%, while the control region was 62.59%. The protein-coding genes and 6 CSBs were identified. The sequence information could play an important role in the study of phylogenetic relationships between the sleepy cod and its related species. PMID:26075481

  20. COD measurements at various positions along a crack

    NASA Technical Reports Server (NTRS)

    Sharpe, W. N., Jr.; Su, X.

    1988-01-01

    Load versus crack-opening-displacement (COD) was measured at various positions along the border of a fatigue crack as it grew from a small surface crack on the edge of an aluminum specimen into a through-the-thickness crack. Displacements were measured with a laser-based interferometric system with a gage length of 70 microns and a resolution of 0.01 micron. These load-COD curves can be used to determine opening loads and thereby investigate the effect of closure on the growth of small cracks. In general, the opening loads decrease as the crack grows.

  1. Digital models of ground-water flow in the Cape Cod aquifer system, Massachusetts

    USGS Publications Warehouse

    Guswa, John H.; LeBlanc, Denis R.

    1981-01-01

    The Cape Cod aquifer system was simulated with three-dimensional finite-difference ground-water-flow models. Five areas were modeled to provide tools which can be used to help predict the hydrologic impacts of regional water development and disposal schemes. Model boundaries were selected to represent the natural hydrologic boundaries of the aquifer. The boundary between fresh and saline ground water is treated as an interface of no dispersion, and the saline-water zone is treated as being non-flowing. Comparisons of calculated and observed head values, position of the freshwater and saline-water boundary, and ground-water-discharge rates at locations where data are available indicate that the simulated ground-water reservoirs generally agree with the field conditions and the models can be used for predictive studies. (USGS)

  2. Digital models of ground-water flow in the Cape Cod aquifer system, Massachusetts

    USGS Publications Warehouse

    Guswa, John H.; LeBlanc, Denis R.

    1985-01-01

    The Cape Cod aquifer system was simulated with three-dimensional finite-difference ground-water-flow models. Five areas were modeled to provide tools that can be used to evaluate the hydrologic impacts of regional water development and waste disposal. The model boundaries were selected to represent the natural hydrologic boundaries of the aquifer. The boundary between fresh and saline ground water was treated as an interface along which there is no dispersion. The saline-water zone was treated as static (nonflowing). Comparisons of calculated and observed values of head, position of the boundary between fresh and saline water, and ground-water discharge (at locations where data were available) indicate that the simulated groundwater reservoirs generally agree with field conditions. Model analyses indicate that the total steady-state freshwater-flow rate through the five modeled areas is approximately 412 cubic feet per second.

  3. The homogeneous/ Heterogeneous data weighting method of LEO combined orbit determination based on BI-satellite positioning system with its application

    NASA Astrophysics Data System (ADS)

    Zhao, D. Y.; Pan, X. G.; Wang, J. Q.; Wang, Z. M.

    2008-01-01

    Aiming at combined orbit determination (COD) multi-source data fusion for low earth orbit (LEO) based on bi-satellite positioning system (BPS), an improved variance component estimation (VCE) optimal weighting method of homogeneous data is established with two-step system errors correction. And then an integrated optimal weighting method based on model structure characteristics analysis and VCE estimation of heterogeneous data is put forward by analyzing the essence of multi-source fusion measure model which is a multi-structural, multi-parametric, non-linear regression model. Then the algorithm of optimal weighting and COD parameters estimation is designed, and two kinds of COD simulation experiments are carried out by processing homogeneous data of bi-satellite range sum and its back-up satellite data, heterogeneous data of bi-satellite range sum data and star sensor angle data. Theoretical analysis and simulation computations show that improved VCE method based on two-step system errors correction can gain higher precision than that of traditional experience weighting method for COD of homogeneous data weighting. At the same time, by introducing weighting factor which denotes model structure characteristics and proves the designed optimal weighting algorithm, the amelioration of COD precision of LEO and bi-satellite gain to some extent is feasible from practical application.

  4. Studies of Immobilized Homogeneous Metal Catalysts on Silica Supports

    SciTech Connect

    Keith James Stanger

    2003-05-31

    The tethered, chiral, chelating diphosphine rhodium complex, which catalyzes the enantioselective hydrogenation of methyl-{alpha}-acetamidocinnamate (MAC), has the illustrated structure as established by {sup 31}P NMR and IR studies. Spectral and catalytic investigations also suggest that the mechanism of action of the tethered complex is the same as that of the untethered complex in solution. The rhodium complexes, [Rh(COD)H]{sub 4}, [Rh(COD){sub 2}]{sup +}BF{sub 4}{sup -}, [Rh(COD)Cl]{sub 2}, and RhCl{sub 3} {center_dot} 3H{sub 2}O, adsorbed on SiO{sub 2} are optimally activated for toluene hydrogenation by pretreatment with H{sub 2} at 200 C. The same complexes on Pd-SiO{sub 2} are equally active without pretreatments. The active species in all cases is rhodium metal. The catalysts were characterized by XPS, TEM, DRIFTS, and mercury poisoning experiments. Rhodium on silica catalyzes the hydrogenation of fluorobenzene to produce predominantly fluorocyclohexane in heptane and 1,2-dichloroethane solvents. In heptane/methanol and heptane/water solvents, hydrodefluorination to benzene and subsequent hydrogenation to cyclohexane occurs exclusively. Benzene inhibits the hydrodefluorination of fluorobenzene. In DCE or heptane solvents, fluorocyclohexane reacts with hydrogen fluoride to form cyclohexene. Reaction conditions can be chosen to selectively yield fluorocyclohexane, cyclohexene, benzene, or cyclohexane. The oxorhenium(V) dithiolate catalyst [-S(CH{sub 2}){sub 3}s-]Re(O)(Me)(PPh{sub 3}) was modified by linking it to a tether that could be attached to a silica support. Spectroscopic investigation and catalytic oxidation reactivity showed the heterogenized catalyst's structure and reactivity to be similar to its homogeneous analog. However, the immobilized catalyst offered additional advantages of recyclability, extended stability, and increased resistance to deactivation.

  5. Exposure of first-feeding cod larvae to dispersed crude oil results in similar transcriptional and metabolic responses as food deprivation.

    PubMed

    Hansen, Bjørn Henrik; Lie, Kai K; Størseth, Trond R; Nordtug, Trond; Altin, Dag; Olsvik, Pål A

    2016-01-01

    Exposure of first-feeding cod larvae (Gadus morhua) to dispersed oil results in reduced feeding during an important transition period. First-feeding cod larvae were subjected to a 4-d treatment of food deprivation and sampled for microarray analyses. These microarray data were combined with data from cod larvae treated with mechanically and chemically dispersed oil in an attempt to understand to what extent starvation might explain some of the effects observed in first-feeding cod larvae during oil exposure. Transcriptional profiling of cod larvae suggested that the influence of oil exposure was almost as dramatic as being completely deprived of food. Protein and cellular degradation and loss of amino acids and glucose appear to be concomitant responses to both oil exposure and starvation. Fluorescence imaging of gut content indicated low uptake of food, and reduced growth (decrease in dry weight and in carbon and nitrogen content) was also noted in oil-exposed larvae, providing phenotypic anchoring of microarray data. The study displays the importance in combining use of high-throughput molecular tools with assessment of fitness-related endpoints in order to provide a greater understanding of toxicant-induced responses. This combined-approach investigation suggests that reduction of food uptake is an important process to be included when predicting effects of accidental oil spills. Finally, when comparing data from two oil treatments, exposure to chemically dispersed oil did not appear to result in greater toxicity than exposure to mechanically dispersed oil. PMID:27484138

  6. 78 FR 32612 - Collect on Delivery (COD)-Service Features

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-31

    ... From the Federal Register Online via the Government Publishing Office POSTAL SERVICE 39 CFR Part 111 Collect on Delivery (COD)--Service Features AGENCY: Postal Service\\TM\\. ACTION: Proposed rule. SUMMARY: Effective July 28, 2013, the Postal Service TM proposes to revise Mailing Standards of the...

  7. Staphylococcus aureus CodY Negatively Regulates Virulence Gene Expression▿

    PubMed Central

    Majerczyk, Charlotte D.; Sadykov, Marat R.; Luong, Thanh T.; Lee, Chia; Somerville, Greg A.; Sonenshein, Abraham L.

    2008-01-01

    CodY is a global regulatory protein that was first discovered in Bacillus subtilis, where it couples gene expression to changes in the pools of critical metabolites through its activation by GTP and branched-chain amino acids. Homologs of CodY can be found encoded in the genomes of nearly all low-G+C gram-positive bacteria, including Staphylococcus aureus. The introduction of a codY-null mutation into two S. aureus clinical isolates, SA564 and UAMS-1, through allelic replacement, resulted in the overexpression of several virulence genes. The mutant strains had higher levels of hemolytic activity toward rabbit erythrocytes in their culture fluid, produced more polysaccharide intercellular adhesin (PIA), and formed more robust biofilms than did their isogenic parent strains. These phenotypes were associated with derepressed levels of RNA for the hemolytic alpha-toxin (hla), the accessory gene regulator (agr) (RNAII and RNAIII/hld), and the operon responsible for the production of PIA (icaADBC). These data suggest that CodY represses, either directly or indirectly, the synthesis of a number of virulence factors of S. aureus. PMID:18156263

  8. Automatic grunt detector and recognizer for Atlantic cod (Gadus morhua).

    PubMed

    Urazghildiiev, Ildar R; Van Parijs, Sofie M

    2016-05-01

    Northwest Atlantic cod (Gadus morhua) have been heavily overfished in recent years and have not yet recovered. Passive acoustic technology offers a new approach to identify the spatial location of spawning fish, as well as their seasonal and long term persistence in an area. To date, the lack of a species-specific detector has made searching for Atlantic cod grunts in large amounts of passive acoustic data cumbersome. To address this problem, an automatic grunt detection and recognition algorithm that processes yearlong passive acoustic data recordings was designed. The proposed technique is a two-stage hypothesis testing algorithm that includes detecting and recognizing all grunt-like sounds. Test results demonstrated that the algorithm provided a detection probability of 0.93 for grunts with a signal-to-noise ratio (SNR) higher than 10 dB, and a detection probability of 0.8 for grunts with the SNR ranging from 3 to 10 dB. This detector is being used to identify cod in current and historical data from U.S. waters. Its use has significantly reduced the time required to find and validate the presence of cod grunts. PMID:27250148

  9. 78 FR 41305 - Collect on Delivery (COD)-Service Features

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-07-10

    ... INFORMATION: The Postal Service published a notice of proposed rulemaking on May 31, 2013 (78 FR 32612-32613... 111 Collect on Delivery (COD)--Service Features AGENCY: Postal Service TM . ACTION: Final rule... proposed rule were received, the Postal Service will adopt the proposed changes to Collect on Delivery...

  10. Exophiala angulospora causes systemic inflammation in atlantic cod Gadus morhua.

    PubMed

    Gjessing, Mona Cecilie; Davey, Marie; Kvellestad, Agnar; Vrålstad, Trude

    2011-10-01

    Species of Exophiala are opportunistic fungal pathogens that may infect a broad range of warm- and cold-blooded animals, including salmonids and Atlantic cod. In the present study, we observed abnormal swimming behaviour and skin pigmentation and increased mortality in cod kept in an indoor tank. Necropsy revealed foci of different sizes with a greyish to brownish colour in internal organs of diseased fish. The foci consisted of ramifying darkly pigmented fungal hyphae surrounded by distinct layers of inflammatory cells, including macrophage-like cells. In the inner layer with many hyphae, the macrophage-like cells were dead. We observed no apparent restriction of fungal growth by the inflammatory response. A darkly pigmented fungus was repeatedly isolated in pure culture from foci of diseased fish and identified as Exophiala angulospora using morphological and molecular characters. This species has not been previously reported to cause disease in cod, but has been reported as an opportunistic pathogen of both marine and freshwater fish. Based on the morphology and sequence analysis presented here, we conclude that E. angulospora caused the observed chronic multifocal inflammation in internal organs of cod, leading to severe disease and mortality. PMID:22132499

  11. Delineation of groundwater recharge areas, western Cape Cod, Massachusetts

    USGS Publications Warehouse

    Masterson, John P.; Walter, Donald A.

    2000-01-01

    For additional information on the hydrology and geology of western Cape Cod, the reader is referred to the following reports: LeBlanc and others (1986), Barlow and Hess (1993), Masterson and others (1997a), Masterson and others (1997b), Masterson and others (1998), Ogden Environmental and Energy Services, Inc. (1998) and Jacobs Engineering Group, Inc. (1999).

  12. Arctic Climate Change: A Tale of Two Cod Species

    EPA Science Inventory

    Arctic cod play an important role in the Arctic trophic hierarchy as the consumer of primary productivity and a food source for many marine fish and mammals. Shifts in their distribution and abundance could have cascading affects in the marine environment. This paper investigates...

  13. Homogeneous spaces of Dirac groupoids

    NASA Astrophysics Data System (ADS)

    Jotz Lean, Madeleine

    2016-06-01

    A Poisson structure on a homogeneous space of a Poisson groupoid is homogeneous if the action of the Lie groupoid on the homogeneous space is compatible with the Poisson structures. According to a result of Liu, Weinstein and Xu, Poisson homogeneous spaces of a Poisson groupoid are in correspondence with suitable Dirac structures in the Courant algebroid defined by the Lie bialgebroid of the Poisson groupoid. We show that this correspondence result fits into a more natural context: the one of Dirac groupoids, which are objects generalizing Poisson groupoids and multiplicative closed 2-forms on groupoids.

  14. Platinum(II) 1,5-COD oxo complexes

    SciTech Connect

    Shan, H.; James, A.; Sharp, P.R.

    1998-11-02

    Three new types of platinum(II) oxo complexes--[(1,5-COD)Pt({mu}{sup 3}-O)(AuL)]{sub 2}(BF{sub 4}){sub 2} [1, L = PPh{sub 3}, PPh{sub 2}Et, PPh{sub 2}-i-Pr, P(o-tol){sub 3}, P(p-tol){sub 3}, P(p-MeOC{sub 6}H{sub 4}){sub 3}, P(p-CF{sub 3}C{sub 6}H{sub 4}){sub 3}], [(1,5-COD)Pt{l_brace}{mu}{sup 3}-O(AuL){sub 2}{r_brace}{sub 2}](BF{sub 4}){sub 2} (2), and [(1,5-COD){sub 4}Pt{sub 4}({mu}{sup 3}-O){sub 2}Cl{sub 2}]X{sub 2} (3, X = BF{sub 4}; 3a, X = CF{sub 3}SO{sub 3})--are obtained from oxo/chloro exchange reactions between (1,5-COD)PtCl{sub 2} and [(LAu){sub 3}({mu}{sup 3}-O)]BF{sub 4}. Crystals of 1 (L = PPh{sub 3}) from CDCl{sub 3} are triclinic. Crystals of 3a from CH{sub 2}Cl{sub 2}/toluene are trigonal. The structure of the cationic portion of 1 shows a planar (COD)-Pt({mu}-O){sub 2}Pt(COD) unit with slightly out-of-plane LAu{sup +} groups linearly coordinated to the oxo ligands. The structure of the cationic portion of 3a is similar and shows a slightly folded (COD)Pt({mu}-O){sub 2}Pt(COD) unit with out-of-plane [(COD)PtCl]{sup +} groups coordinated to the oxo ligands. Solutions of 3 in untreated CH{sub 2}Cl{sub 2} or CD{sub 2}Cl{sup 2} deposit crystals of [(1,5-COD){sub 4}Pt{sub 4}({mu}{sup 3}-O){sub 2}({mu}{sup 2}-OH)](BF{sub 4}){sub 3} (4) which are monoclinic. The core structure of the cationic portion of 4 shows a tetranuclear platinum cation in which the metal atoms occupy the corners of a distorted tetrahedron and two {mu}{sup 3}-oxo ligands and one {mu}{sup 2}-hydroxo ligand bridge the four platinum atoms. Reaction of 1 (L = PPh{sub 3}) with PPh{sub 3} gives OPPh{sub 3} and [(Ph{sub 3}P){sub 3}PtAuPPh{sub 3}]BF{sub 4} (5) which is also obtained from (Ph{sub 3}P){sub 4}Pt and Ph{sub 3}-PAuBF{sub 4}. Crystals of 5 from THF are monoclinic. The structure of 5 consists of an L{sub 3}Pt-AuL cation where the Au atom is linear 2-coordinate and the Pt atom is distorted square-planar 4-coordinate.

  15. 40 CFR Appendix A to Part 449 - Sampling Protocol for Soluble COD

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... of collection (see the requirements for COD in Table II at 40 CFR part 136). 6. Analyze the sample using a method approved for COD in Table IB at 40 CFR part 136. Note: Because this procedure is specific... analyzed within 28 days of collection (see the requirements for COD in Table II at 40 CFR part 136)....

  16. 40 CFR Appendix A to Part 449 - Sampling Protocol for Soluble COD

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... the requirements for COD in Table II at 40 CFR part 136). 6. Analyze the sample using a method approved for COD in Table IB at 40 CFR part 136. Note: Because this procedure is specific to this point... days of collection (see the requirements for COD in Table II at 40 CFR part 136). 3. Prior to...

  17. 40 CFR Appendix A to Part 449 - Sampling Protocol for Soluble COD

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... of collection (see the requirements for COD in Table II at 40 CFR part 136). 6. Analyze the sample using a method approved for COD in Table IB at 40 CFR part 136. Note: Because this procedure is specific... or to prepare QC samples. 7. Analyze the sample using a method approved for COD in Table 1B at 40...

  18. Rice hull/MnFe2O4 composite: preparation, characterization and its rapid microwave-assisted COD removal for organic wastewater.

    PubMed

    Lv, Shuangshuang; Chen, Xuegang; Ye, Ying; Yin, Suhang; Cheng, Jipeng; Xia, Meisheng

    2009-11-15

    Adsorbent/ferrite composites can adsorb and degrade organics in the organic wastewater treatment. In this study, a rice hull/MnFe(2)O(4) composite (RHM) was prepared via calcination under nitrogen atmosphere and was used to treat organic wastewater with the assistance of microwave radiation. Rice hull was pyrolysed to a porous substrate that consisted of silica and activated carbon under high temperature. Monodisperse spinel MnFe(2)O(4) nanoparticles whose mean diameter is around 59 nm are distributed on the substrate. With the assistance of microwave radiation, RHM was motivated to a hotspot of adsorption and catalysis which could remove more than 70% COD of wastewater within 6 min. The maximum COD removal was 73.5% when the concentration of RHM was 15 mg mL(-1) and the irradiation time of microwave radiation was 6 min. Although the BET surface area and iodine value of RHM are half of rice hull ash (RHA), the COD removal of RHM is 7-20% higher than that of RHA. It is attributed to the presence of MnFe(2)O(4), which enhances the catalytic activity of RHM. RHM can be regenerated via water washing. However, the surface area and the maximum COD removal of RHM decrease for each regeneration cycle. With the advantages of low cost and rapid processing, this novel rice hull/MnFe(2)O(4) composite could gain promising application in wastewater treating-agent. PMID:19581049

  19. Decolorization and COD removal from real textile wastewater by chemical and electrochemical Fenton processes: a comparative study

    PubMed Central

    2013-01-01

    Background Due to the presence of non-biodegradable and toxic compounds, textile wastewater is difficult to treat by conventional methods. In the present study, Electrochemical Fenton (EF) and Chemical Fenton (CF) processes were studied and compared for the treatment of real textile wastewater. The effects of electrical current, ferrous ion, hydrogen peroxide concentration and reaction time on the removal efficiencies of COD and color were investigated. All the experiments were carried out at pH = 3. Results Both EF and CF processes were mostly efficient within hydrogen peroxide concentration of 1978 mg/L (H2O2: COD ~ 1.1). The highest COD and color removal efficiencies were 70.6% and 72.9% respectively which were obtained through the EF process in 350 mA electrical current, 1978 mg/L hydrogen peroxide and 60 minutes reaction time. Furthermore, the operational costs of EF and CF processes were 17.56 and 8.6 US$ per kilogram of the removed COD respectively. Conclusion It was concluded that the electrochemical Fenton process was more efficient than the chemical Fenton process in the degradation of textile wastewater. Likewise, Although EF process imposed higher operational costs than the CF; it dramatically decreased the reaction time to gain the highest degradation efficiency. PMID:24355087

  20. [Process Optimization of Aerobic Granular Sludge Continuous-Flow System for the Treatment of Low COD/N Ratio Sewage].

    PubMed

    Lu, Lei; Xin, Xin; Lu, Hang; Zhu, Liao-dong; Xie, Si-jian; Wu, Yong

    2015-10-01

    The mature aerobic granular sludge (AGS) was inoculated in a continuous-flow joint constructor reactor to treat low chemical oxygen demand/nitrogen (COD/N) ratio sewage. The effects of aeration intensity and hydraulic retention time (HRT) on the denitrification and phosphorus removal efficiencies and the granular sludge stabilization were investigated. When the aeration intensity was 300 mL x min(-1) (superficial air upflow velocity of 1.2 cm x s(-1)) and the HRT was 7.5 h, the average removal efficiencies of COD, TN and TP were 76.34%, 51.23% and 53.70%, respectively. The mixed liquor suspended solids (MLSS) was only about 2 000 mg x L(-1), the sludge volume index ( SVI) was below 50 mL x g(-1), and the AGS exhibited complete forms and good settling performances. Additionally, the low COD/N ratios sewage could promote the production of extracellular polymeric substances (EPS) of AGS, and the PN proteins in EPS played a pivotal role in the maintenance of AGS stabilization. PMID:26841612

  1. The CodY regulator is essential for virulence in Streptococcus suis serotype 2

    PubMed Central

    Feng, Liping; Zhu, Jiawen; Chang, Haitao; Gao, Xiaoping; Gao, Cheng; Wei, Xiaofeng; Yuan, Fangyan; Bei, Weicheng

    2016-01-01

    The main role of CodY, a global regulatory protein in most low G + C gram-positive bacteria, is in transcriptional repression. To study the functions of CodY in Streptococcus suis serotype 2 (S. suis 2), a mutant codY clone named ∆codY was constructed to explore the phenotypic variation between ∆codY and the wild-type strain. The result showed that the codY mutation significantly inhibited cell growth, adherence and invasion ability of S. suis 2 to HEp-2 cells. The codY mutation led to decreased binding of the pathogen to the host cells, easier clearance by RAW264.7 macrophages and decreased growth ability in fresh blood of Cavia porcellus. The codY mutation also attenuated the virulence of S. suis 2 in BALB/c mice. Morphological analysis revealed that the codY mutation decreased the thickness of the capsule of S. suis 2 and changed the surface structures analylized by SDS-PAGE. Finally, the codY mutation altered the expressions of many virulence related genes, including sialic acid synthesis genes, leading to a decreased sialic acid content in capsule. Overall, mutation of codY modulated bacterial virulence by affecting the growth and colonization of S. suis 2, and at least via regulating sialic acid synthesis and capsule thickness. PMID:26883762

  2. Improvement of COD removal by controlling the substrate degradability during the anaerobic digestion of recalcitrant wastewater.

    PubMed

    Kawai, Minako; Nagao, Norio; Kawasaki, Nobuyuki; Imai, Akio; Toda, Tatsuki

    2016-10-01

    The recalcitrant landfill leachate was anaerobically digested at various mixing ratios with labile synthetic wastewater to evaluate the degradation properties of recalcitrant wastewater. The proportion of leachate to the digestion system was increased in three equal steps, starting from 0% to 100%, and later decreased back to 0% with the same steps. The chemical oxygen demand (COD) for organic carbon and other components were calculated by analyzing the COD and dissolved organic carbon (DOC), and the removal efficiencies of COD carbon and COD others were evaluated separately. The degradation properties of COD carbon and COD others shifted owing to changing of substrate degradability, and the removal efficiencies of COD carbon and COD others were improved after supplying 100% recalcitrant wastewater. The UV absorptive property and total organic carbon (TOC) of each molecular size using high performance liquid chromatography (HPLC)-size exclusion chromatography (SEC) with UVA and TOC detectors were also investigated, and the degradability of different molecular sizes was determined. Although the SEC system detected extracellular polymeric substances (EPS), which are produced by microbes in stressful environments, during early stages of the experiment, EPS were not detected after feeding 100% recalcitrant wastewater. These results suggest that the microbes had acclimatized to the recalcitrant wastewater degradation. The high removal rates of both COD carbon and COD others were sustained when the proportion of labile wastewater in the substrate was 33%, indicating that the effective removal of recalcitrant COD might be controlled by changing the substrate's degradability. PMID:27449962

  3. The CodY regulator is essential for virulence in Streptococcus suis serotype 2.

    PubMed

    Feng, Liping; Zhu, Jiawen; Chang, Haitao; Gao, Xiaoping; Gao, Cheng; Wei, Xiaofeng; Yuan, Fangyan; Bei, Weicheng

    2016-01-01

    The main role of CodY, a global regulatory protein in most low G + C gram-positive bacteria, is in transcriptional repression. To study the functions of CodY in Streptococcus suis serotype 2 (S. suis 2), a mutant codY clone named ∆codY was constructed to explore the phenotypic variation between ∆codY and the wild-type strain. The result showed that the codY mutation significantly inhibited cell growth, adherence and invasion ability of S. suis 2 to HEp-2 cells. The codY mutation led to decreased binding of the pathogen to the host cells, easier clearance by RAW264.7 macrophages and decreased growth ability in fresh blood of Cavia porcellus. The codY mutation also attenuated the virulence of S. suis 2 in BALB/c mice. Morphological analysis revealed that the codY mutation decreased the thickness of the capsule of S. suis 2 and changed the surface structures analylized by SDS-PAGE. Finally, the codY mutation altered the expressions of many virulence related genes, including sialic acid synthesis genes, leading to a decreased sialic acid content in capsule. Overall, mutation of codY modulated bacterial virulence by affecting the growth and colonization of S. suis 2, and at least via regulating sialic acid synthesis and capsule thickness. PMID:26883762

  4. COD and Color Removal from Real Dyeing Wastewater by Ozonation.

    PubMed

    Yang, De-min; Yuan, Jian-mei

    2016-05-01

    Ozonation of real dye wastewater for removal of color and COD reduction covering a wide range in operating parameters forms the scope of the present work. The influence of parameters such as influent pH, ozone flow rate and initial effluent concentration on ozonation efficiency has been critically examined. It has been observed from the present investigation that a maximum of COD removal efficiency of 92.5% has been achieved under optimum operating conditions (pH=11; ozone flow rate: 6×10(-3) m(3)/minute). Further the biodegradability index of the dye effluent has increased from an initial value of 0.18 to 0.49 during ozonation indicating favorable adaptation of ozonation as a primer to the biochemical technique to enhance the efficiency of biochemical treatment. PMID:27131304

  5. Positive Regulation of Botulinum Neurotoxin Gene Expression by CodY in Clostridium botulinum ATCC 3502

    PubMed Central

    Zhang, Zhen; Dahlsten, Elias; Korkeala, Hannu

    2014-01-01

    Botulinum neurotoxin, produced mainly by the spore-forming bacterium Clostridium botulinum, is the most poisonous biological substance known. Here, we show that CodY, a global regulator conserved in low-G+C Gram-positive bacteria, positively regulates the botulinum neurotoxin gene expression. Inactivation of codY resulted in decreased expression of botA, encoding the neurotoxin, as well as in reduced neurotoxin synthesis. Complementation of the codY mutation in trans rescued neurotoxin synthesis, and overexpression of codY in trans caused elevated neurotoxin production. Recombinant CodY was found to bind to a 30-bp region containing the botA transcription start site, suggesting regulation of the neurotoxin gene transcription through direct interaction. GTP enhanced the binding affinity of CodY to the botA promoter, suggesting that CodY-dependent neurotoxin regulation is associated with nutritional status. PMID:25281376

  6. COD::CIF::Parser: an error-correcting CIF parser for the Perl language

    PubMed Central

    Merkys, Andrius; Vaitkus, Antanas; Butkus, Justas; Okulič-Kazarinas, Mykolas; Kairys, Visvaldas; Gražulis, Saulius

    2016-01-01

    A syntax-correcting CIF parser, COD::CIF::Parser, is presented that can parse CIF 1.1 files and accurately report the position and the nature of the discovered syntactic problems. In addition, the parser is able to automatically fix the most common and the most obvious syntactic deficiencies of the input files. Bindings for Perl, C and Python programming environments are available. Based on COD::CIF::Parser, the cod-tools package for manipulating the CIFs in the Crystallography Open Database (COD) has been developed. The cod-tools package has been successfully used for continuous updates of the data in the automated COD data deposition pipeline, and to check the validity of COD data against the IUCr data validation guidelines. The performance, capabilities and applications of different parsers are compared. PMID:26937241

  7. Removal of COD and colour in real pharmaceutical wastewater by photoelectrocatalytic oxidation method.

    PubMed

    Fang, Tao; Liao, Lixia; Xu, Xiangju; Peng, Jinsong; Jing, Yingqi

    2013-01-01

    In this study, TiO2/Ni photo-anode and multi-walled carbon nano-tubes (MWCNTs) air cathode were prepared by the dip-coating method, and the photoelectrocatalytic degradation of real pharmaceutical wastewater was investigated in the self-made reactor. The combination of the TiO2/Ni electrode and MWCNTs air cathode was adopted to treat the pharmaceutical wastewater by the process of photoelectrocatalysis. Various operational parameters to achieve optimum efficiency of this photoelectrocatalytic degradation system are presented, such as applied bias voltage, NaCl concentration, pH and different degradation methods. Under the optimal conditions, the removal of chemical oxygen demand (COD) and colour are 93.5% and 78.5% respectively. The possible roles of the anode-cathode on the reactions and the probable mechanisms of effect were also discussed. The photoelectrocatalytic technology can be used for the long-term treatment of real pharmaceutical wastewater. PMID:23837329

  8. Can Georges Bank larval cod survive on a calanoid diet?

    NASA Astrophysics Data System (ADS)

    Lynch, Daniel R.; Lewis, Craig V. W.; Werner, Francisco E.

    A simple conceptual model is developed for larval fish feeding on stage-structured prey populations, in an Eulerian framework. The model combines simplified contemporary models of larval fish trophodynamics, zooplankton population dynamics, and hydrodynamic turbulence. The Eulerian view allows instructive maps of larval feeding and growth rates for individual prey species, alone or in combination. Decadally averaged MARMAP surveys of Calanus finmarchicus and Pseudocalanus spp. are analyzed for the March-April period. Quasi-static population dynamics are used to infer the abundance of the smallest stages from adult female abundance. Computed growth rates show that Calanus alone is insufficient to support the smallest cod larvae (4 and 6 mm), but provides good growth (⩾10%/day) for large larvae (10, 12 mm). Pseudocalanus alone provides generally good growth for all larvae but is mismatched spatially with observed cod spawning and subsequent larval advection. Both species together provide good growth, matched spatially with larval cod, for 6 mm and larger larvae. A dietary supplement beyond these two species is needed for the smallest larvae. The procedure provides a general method for mapping observations of zooplankton abundance, distribution and reproductive status, and their relevance to larval fish survival, when the smallest stages are not observable.

  9. A late Wisconsinan marine incursion into Cape Cod Bay, Massachusetts

    USGS Publications Warehouse

    Oldale, R.N.

    1988-01-01

    Reinterpretation of seismic-reflection data from Cape Cod Bay has produced a revised late Wisconsinan history. Acoustically laminated deposits, originally inferred to be glaciolacustrine, are shown to be glaciomarine by tracing them to glaciomarine mud in Stellwagen Basin, north of Cape Cod Bay. A late Wisconsinan marine deposit of nonglacial origin overlies the glaciomarine deposits in Cape Cod Bay. Both deposits indicate that the crust was isostatically depressed below the late Wisconsinan eustatic sea level and that deglaciation and marine submergence occurred simultaneously. Valleys cut into the marine deposits, both glacial and nonglacial, indicate that a low sea-level stand, the result of isostatic rebound, occurred shortly after the marine incursion. A transgressive uncomformity and marine deposits, both mostly of Holocene age, overlie the late Wisconsinan deposits. The marine incursion, regression, and Holocene transgression represent the northward passage of an isostatically induced peripheral bulge following deglaciation. In turn, the bulge, a response to crustal loading and unloading, indicates thick glacier ice in the terminal zone and lends support to arguments for a maximum Laurentide ice model. Evidence for a late Wisconsinan marine incursion, regression, and the passage of a peripheral bulge should be sought in the other bays and sounds of the New England terminal zone. ?? 1988.

  10. Genomic characterization of the Atlantic cod sex-locus.

    PubMed

    Star, Bastiaan; Tørresen, Ole K; Nederbragt, Alexander J; Jakobsen, Kjetill S; Pampoulie, Christophe; Jentoft, Sissel

    2016-01-01

    A variety of sex determination mechanisms can be observed in evolutionary divergent teleosts. Sex determination is genetic in Atlantic cod (Gadus morhua), however the genomic location or size of its sex-locus is unknown. Here, we characterize the sex-locus of Atlantic cod using whole genome sequence (WGS) data of 227 wild-caught specimens. Analyzing more than 55 million polymorphic loci, we identify 166 loci that are associated with sex. These loci are located in six distinct regions on five different linkage groups (LG) in the genome. The largest of these regions, an approximately 55 Kb region on LG11, contains the majority of genotypes that segregate closely according to a XX-XY system. Genotypes in this region can be used genetically determine sex, whereas those in the other regions are inconsistently sex-linked. The identified region on LG11 and its surrounding genes have no clear sequence homology with genes or regulatory elements associated with sex-determination or differentiation in other species. The functionality of this sex-locus therefore remains unknown. The WGS strategy used here proved adequate for detecting the small regions associated with sex in this species. Our results highlight the evolutionary flexibility in genomic architecture underlying teleost sex-determination and allow practical applications to genetically sex Atlantic cod. PMID:27499266

  11. Genomic characterization of the Atlantic cod sex-locus

    PubMed Central

    Star, Bastiaan; Tørresen, Ole K.; Nederbragt, Alexander J.; Jakobsen, Kjetill S.; Pampoulie, Christophe; Jentoft, Sissel

    2016-01-01

    A variety of sex determination mechanisms can be observed in evolutionary divergent teleosts. Sex determination is genetic in Atlantic cod (Gadus morhua), however the genomic location or size of its sex-locus is unknown. Here, we characterize the sex-locus of Atlantic cod using whole genome sequence (WGS) data of 227 wild-caught specimens. Analyzing more than 55 million polymorphic loci, we identify 166 loci that are associated with sex. These loci are located in six distinct regions on five different linkage groups (LG) in the genome. The largest of these regions, an approximately 55 Kb region on LG11, contains the majority of genotypes that segregate closely according to a XX-XY system. Genotypes in this region can be used genetically determine sex, whereas those in the other regions are inconsistently sex-linked. The identified region on LG11 and its surrounding genes have no clear sequence homology with genes or regulatory elements associated with sex-determination or differentiation in other species. The functionality of this sex-locus therefore remains unknown. The WGS strategy used here proved adequate for detecting the small regions associated with sex in this species. Our results highlight the evolutionary flexibility in genomic architecture underlying teleost sex-determination and allow practical applications to genetically sex Atlantic cod. PMID:27499266

  12. Colour and organic removal of biologically treated coffee curing wastewater by electrochemical oxidation method.

    PubMed

    Bejankiwar, Rajesh S; Lokesh, K S; Gowda, T P Halappa

    2003-05-01

    The treatment of biologically treated wastewater of coffee-curing industry by the electrochemical oxidation using steel anode was investigated. Bench-scale experiments were conducted for activated sludge process on raw wastewater and the treated effluents were further treated by electrochemical oxidation method for its colour and organic content removal. The efficiency of the process was determined in terms of removal percentage of COD, BOD and colour during the course of reaction. Several operating parameters like time, pH and current density were examined to ascertain their effects on the treatment efficiency. Steel anode was found to be effective for the COD and colour removal with anode efficiency of 0.118 kgCOD x h(-1) x A(-1) x m(-2) and energy consumption 20.61 kWh x kg(-1) of COD at pH 9. The decrease in pH from 9 to 3 found to increase the anode efficiency from 0.118 kgCOD x h(-1) x A(-1) x m(-2) to 0.144 kWh x kg(-1) of COD while decrease the energy consumption from 20.61 kWh x kg(-1) of COD to 12.86 kWh x kg(-1) of COD. The pH of 5 was considered an ideal from the present treatment process as it avoids the addition of chemicals for neutralization of treated effluents and also economical with respect to energy consumption. An empirical relation developed for relationship between applied current density and COD removal efficiency showed strong predictive capability with coefficient of determination of 96.5%. PMID:12938980

  13. Genetic Population Structure and Gene Flow in the Atlantic Cod Gadus Morhua: A Comparison of Allozyme and Nuclear RFLP Loci

    PubMed Central

    Pogson, G. H.; Mesa, K. A.; Boutilier, R. G.

    1995-01-01

    High levels of gene flow have been implicated in producing uniform patterns of allozyme variation among populations of many marine fish species. We have examined whether gene flow is responsible for the limited population structure in the Atlantic cod, Gadus morhua L., by comparing the previously published patterns of variation at 10 allozyme loci to 17 nuclear restriction fragment length polymorphism (RFLP) loci scored by 11 anonymous cDNA clones. Unlike the allozyme loci, highly significant differences were observed among all populations at the DNA markers in a pattern consistent with an isolation-by-distance model of population structure. The magnitude of allele frequency variation at the nuclear RFLP loci significantly exceeded that observed at the protein loci (χ(2) = 24.6, d.f. = 5, P < 0.001). Estimates of gene flow from the private alleles method were similar for the allozymes and nuclear RFLPs. From the infinite island model, however, estimates of gene flow from the DNA markers were fivefold lower than indicated by the proteins. The discrepancy between gene flow estimates, combined with the observation of a large excess of rare RFLP alleles, suggests that the Atlantic cod has undergone a recent expansion in population size and that populations are significantly displaced from equilibrium. Because gene flow is a process that affects all loci equally, the heterogeneity observed among populations at the DNA level eliminates gene flow as the explanation for the homogeneous allozyme patterns. Our results suggest that a recent origin of cod populations has acted to constrain the extent of population differentiation observed at weakly polymorphic loci and implicate a role for selection in affecting the distribution of protein variation among natural populations in this species. PMID:7705638

  14. Fluidized bed heat treating system

    SciTech Connect

    Ripley, Edward B; Pfennigwerth, Glenn L

    2014-05-06

    Systems for heat treating materials are presented. The systems typically involve a fluidized bed that contains granulated heat treating material. In some embodiments a fluid, such as an inert gas, is flowed through the granulated heat treating medium, which homogenizes the temperature of the heat treating medium. In some embodiments the fluid may be heated in a heating vessel and flowed into the process chamber where the fluid is then flowed through the granulated heat treating medium. In some embodiments the heat treating material may be liquid or granulated heat treating material and the heat treating material may be circulated through a heating vessel into a process chamber where the heat treating material contacts the material to be heat treated. Microwave energy may be used to provide the source of heat for heat treating systems.

  15. Groundwater Contamination Due to Activities of an Intensive Hog Farming Operation Located on a Geologic Fault in East Mediterranean: A Study on COD, BOD₅ and Microbial Load.

    PubMed

    Michalopoulos, Charalampos; Tzamtzis, Nikolaos; Liodakis, Stylianos

    2016-02-01

    The application of treated animal wastewater produced in intensive fog farming operations (IHFOs) on surface soil, leads to groundwater contamination. In this study, the contamination of a Mediterranean aquifer caused by long-term application of treated wastewater, produced by an IHFO, on a plot with a geologic fault within the IHFO boundaries, was investigated. Groundwater samples were taken from monitoring wells close to the IHFO. A significant increase of chemical oxygen demand (COD), biochemical oxygen demand (BOD5), total viable count (TVC) and total coliform (TC) concentrations was found in wells, compared to control monitoring well, which were mainly affected by the subsurface flow of contaminated water, due to the presence of the geologic fault. During the winter, significant increases in concentrations of COD, BOD5, TVC and TC were noted and attributed to increased precipitation, which assisted in the accelerated transport of organic compounds and microbial load, through geologic fault, to groundwater. PMID:26290314

  16. Strongly Interacting Homogeneous Fermi Gases

    NASA Astrophysics Data System (ADS)

    Mukherjee, Biswaroop; Patel, Parth; Yan, Zhenjie; Struck, Julian; Zwierlein, Martin

    2016-05-01

    We present a homogeneous box potential for strongly interacting Fermi gases. The local density approximation (LDA) allows measurements on traditional inhomogeneous traps to observe a continuous distribution of Fermi gases in a single shot, but also suffer from a broadened response due to line-of-sight averaging over varying densities. We trap ultracold Fermionic (6 Li) in an optical homogeneous potential and characterize its flatness through in-situ tomography. A hybrid approach combining a cylindrical optical potential with a harmonic magnetic trap allows us to exploit the LDA and measure local RF spectra without requiring significant image reconstruction. We extract various quantities from the RF spectra such as the Tan's contact, and discuss further measurements of homogeneous Fermi systems under spin imbalance and finite temperature.

  17. A full-scale biological treatment system application in the treated wastewater of pharmaceutical industrial park.

    PubMed

    Lei, Ge; Ren, Hongqiang; Ding, Lili; Wang, Feifei; Zhang, Xingsong

    2010-08-01

    A full-scale combined biological system is used for the treatment of treated wastewater discharged from a pharmaceutical industrial park. This treated water is rich in NH(4)(+)-N (average in 86.4 mg/L), low in COD/NH(4)(+)-N (average in 3.4) and low in BOD(5)/COD ratio (average in 0.24) with pH varying from 7.16 to 7.78. The final effluent of the combined treatment process was stably below 100mg/L COD and 20mg/L NH(4)(+)-N, separately, with organic loading rate of 4954 kg COD/d and 92.5 kg NH(4)(+)-N/d. It is found that the BOD(5)/COD ratio could be raised from 0.24 to 0.35, and the production of total VFAs account for 9.57% of the total COD via the treatment of hydrolysis/acidification. MBBR and oxidation ditch represent 35.4% and 60.7% of NH(4)(+)-N removal, 30.2% and 61.5% of COD removal, separately, of the total treatment process. PCR-DGGE is used for microbial community analysis of MBBR and oxidation ditch. PMID:20335031

  18. Restoring nitrification and COD removal at a refinery in the Southwest

    SciTech Connect

    Dyke, P.M.; Lucas, G.F.; Christiansen, J.A.; Smith, C.R.

    1995-12-31

    During the month of April 1993, a Southwest Texas refinery experienced a loss of nitrification and Chemical Oxygen Demand (COD) removal capacity in their activated sludge system following several consecutive days of high COD loadings. This resulted in excessive effluent ammonia (NH{sup 3}) and COD levels approaching permit levels. International Biochemical Group-Microbe Masters (Microbe Masters) was brought into the plant at the end of April to assess the situation and provide recommendations to quickly restore nitrification and COD removal. The bioaugmentation program employed at this refinery achieved the following results: (1) restoration of complete nitrification in thirteen days; (2) a 17% increase in COD removal efficiency; and (3) improved plant/operator knowledge of biological system health and performance critical to maintaining optimum BOD, COD and NH{sub 3} removal.

  19. Effect of COD/N ratio and salinity on the performance of sequencing batch reactors.

    PubMed

    Rene, Eldon R; Kim, Sung Joo; Park, Hung Suck

    2008-03-01

    The effects of COD/N ratio (3-6) and salt concentration (0.5-2%) on organics and nitrogen removal efficiencies in three bench top sequencing batch reactors (SBRs) with synthetic wastewater and one SBR with fish market wastewater were investigated under different operating schedules. The solids retention time (SRT, 20-100 days) and aeration time (4-10h) was also varied to monitor the performance. For synthetic wastewater, chemical oxygen demand (COD) removal efficiencies were consistently greater than 95%, irrespective of changes in COD/N ratio, aeration time and salt concentrations. Increasing the salt concentrations decreased the nitrification efficiency, while high COD/N ratio's favored better nitrogen removal (>90%). The treatment of real saline wastewater ( approximately 3.2%) from a fish market showed high COD (>80%) and nitrogen (>40%) removal efficiencies despite high loading rate and COD/N fluctuations, which is due to the acclimatization of the biomass within the SBR. PMID:17383178

  20. Homogenizing Developmental Studies and ESL.

    ERIC Educational Resources Information Center

    Weaver, Margaret E.

    A discussion of pragmatic issues in both developmental studies (DS) and English-as-a-second-language (ESL) instruction at the college level argues that because the two fields have common problems, challenges, and objectives, they have become homogenized as one in many institutions. Because full-time college faculty avoid teaching developmental…

  1. Immunization of guinea-pigs and cattle against adult Rhipicephalus appendiculatus ticks using semipurified nymphal homogenates and adult gut homogenate.

    PubMed Central

    Rechav, Y; Spickett, A M; Dauth, J; Tembo, S D; Clarke, F C; Heller-Haupt, A; Trinder, P K

    1992-01-01

    Guinea-pigs inoculated with crude homogenate of unfed nymphs of the tick Rhipicephalus appendiculatus and with three semipurified fractions of the homogenate obtained by gel permeation chromatography, acquired a significant degree of immunity to infestation with adults of this tick. Fraction 2 induced the highest reduction (66%) in mean weight of engorged females followed by crude homogenate and fractions 1 and 3. Calves immunized with crude homogenates of unfed nymphs, fraction 2 of nymphal homogenate, and gut homogenate of unfed females also acquired immunity against adults of R. appendiculatus. The mean weight of engorged females fed on calves inoculated with nymphal fraction 2 was the lowest of all five groups of calves on which females fed. The reduction in weight (38%) was not significantly different from that observed for females fed on calves inoculated with crude nymphal homogenate (31%) or females from third infestation of adult ticks. No differences in the weight and hatchability of egg batches produced by engorged females collected from the five groups of calves were observed. Analysis of sera collected from the five groups of calves showed that the concentration of albumin, alpha-1, alpha-2 and beta-globulins fluctuated and no significant differences between the treated groups were observed. The levels of gamma-globulin increased in treated groups including the group inoculated with adjuvant only, but unlike previous reports no increase in gamma-globulin or a correlation between the level of gamma-globulin and the degree of resistance acquired were observed in calves exposed to repeated tick infestations. However, the increase in the concentration of gamma-globulin in calves inoculated with fraction 2 or crude nymphal homogenate was higher than that observed in the other groups. PMID:1375584

  2. Identification of CodY Targets in Bacillus anthracis by Genome-Wide In Vitro Binding Analysis

    PubMed Central

    Château, A.; van Schaik, W.; Joseph, P.; Handke, L. D.; McBride, S. M.; Smeets, F. M. H.

    2013-01-01

    In Gram-positive bacteria, CodY is an important regulator of genes whose expression changes under conditions of nutrient limitation. Bacillus anthracis CodY represses or activates directly or indirectly approximately 500 genes. Affinity purification of CodY-DNA complexes was used to identify the direct targets of CodY. Of the 389 DNA binding sites that were copurified with CodY, 132 sites were in or near the regulatory regions governing the expression of 197 CodY-controlled genes, indicating that CodY controls many other genes indirectly. CodY-binding specificity was verified using electrophoretic mobility shift and DNase I footprinting assays for three CodY targets. Analysis of the bound sequences led to the identification of a B. anthracis CodY-binding consensus motif that was found in 366 of the 389 affinity-purified DNA regions. Regulation of the expression of the two genes directly controlled by CodY, sap and eag, encoding the two surface layer (S-layer) proteins, was analyzed further by monitoring the expression of transcriptional lacZ reporter fusions in parental and codY mutant strains. CodY proved to be a direct repressor of both sap and eag expression. Since the expression of the S-layer genes is under the control of both CodY and PagR (a regulator that responds to bicarbonate), their expression levels respond to both metabolic and environmental cues. PMID:23292769

  3. Digestibility of chitin in cod, Gadus morhua, in vivo

    NASA Astrophysics Data System (ADS)

    Danulat, Eva

    1987-12-01

    Sixteen cod, Gadus morhua (L.), were individually fed a single ration of shrimps, Crangon allmanni. Four fish were killed and examined 6, 12, 24 and 48 h after the fish had been fed. Chitinase activities were measured in the extracts of stomach contents, stomach tissue, pyloric caecae, intestinal contents and intestinal tissue. The level of enzyme activity in different parts of the digestive tract was shown to be dependent on the phase of the digestive process. High concentrations of the chitin degradation product N-acetyl-D-glucosamine were determined in the stomach and in the intestinal contents. Based on the chitin concentration in the food organisms and the individual food uptake, the amount of chitin consumed by each fish could be calculated. Only up to 9% of the ingested chitin was recovered from the intestinal contents of the fish at any given time after feeding (6, 12, 24 and 48 h). In addition, only 2.4% of the chitin consumed with the food could be recovered in the collected faeces of the fish. The 4 cod killed 48 h after feeding had completely emptied their stomach. Chitin digestion in these fish was calculated to have been 90%.

  4. Inversions and the origin of behavioral differences in cod.

    PubMed

    Samuk, Kieran

    2016-05-01

    How does adaptation manage to occur in the face of overwhelming gene flow? One popular idea is that the suppression of recombination, for example the fixation of a chromosomal inversion, can maintain linkage disequilibrium between groups of locally adapted alleles that would otherwise be degraded by gene flow. This idea has captured the imagination of many geneticists and evolutionary biologists, but we still have only a basic understanding of its general importance. In this issue of Molecular Ecology, Kirubakaran et al. () examine the role of recombination suppression in a particularly fascinating example of adaptation in the face of gene flow: the evolution of migratory differences between interbreeding populations of cod. Along the north coast of Norway, two types of cod breed in the near-shore waters: a 'stationary' form that lives near the coast year round, and a 'migratory' form that lives far offshore and only returns to the coast to breed. Using a combination of approaches, Kirubakaran et al. () deftly demonstrate that the migratory form has completely fixed two adjacent inversions containing a suite of genes closely connected to migratory behaviour and feeding differences. This work provides an excellent example of how recombination suppression can facilitate adaptive divergence, and helps us understand the geographic and temporal scales over which genomic structural variation evolves. PMID:27213696

  5. Effect of high pressure on cod (Gadus morhua) desalting

    NASA Astrophysics Data System (ADS)

    Salvador, Ângelo C.; Saraiva, Jorge A.; Fidalgo, Liliana G.; Delgadillo, Ivonne

    2013-06-01

    The effect of high pressure on salt and water diffusion in the desalting process of cod was studied. Under pressure, up to 300 MPa, the osmotic equilibrium is reached much faster, compared to desalting at atmospheric pressure. Water (D ew) and salt (D es) effective diffusion coefficients reached a maximum at 200 MPa, increasing 500- and 160-fold, respectively, compared with desalting at atmospheric pressure. Increasing pressure up to 300 MPa causes a reduction in both effective diffusion coefficients, although they were still about 70-fold higher than at atmospheric pressure. Up to 200 MPa, a linear correlation was found between D ew and D es and pressure. However, the total diffused amounts of water and salt, when the osmotic equilibrium was reached, were lower under pressure. At atmospheric pressure cod water content increased 1.65-fold, but under pressure the increment was on average 1.25-fold, while salt content decreased to 0.51-fold the initial value at atmospheric pressure and to around 0.75-fold under pressure.

  6. Atlantic cod (Gadus morhua) hemoglobin genes: multiplicity and polymorphism

    PubMed Central

    Borza, Tudor; Stone, Cynthia; Gamperl, A Kurt; Bowman, Sharen

    2009-01-01

    Background Hemoglobin (Hb) polymorphism, assessed by protein gel electrophoresis, has been used almost exclusively to characterize the genetic structure of Atlantic cod (Gadus morhua) populations and to establish correlations with phenotypic traits such as Hb oxygen binding capacity, temperature tolerance and growth characteristics. The genetic system used to explain the results of gel electrophoresis entails the presence of one polymorphic locus with two major alleles (HbI-1; HbI-2). However, vertebrates have more than one gene encoding Hbs and recent studies have reported that more than one Hb gene is present in Atlantic cod. These observations prompted us to re-evaluate the number of Hb genes expressed in Atlantic cod, and to perform an in depth search for polymorphisms that might produce relevant phenotypes for breeding programs. Results Analysis of Expressed Sequence Tags (ESTs) led to the identification of nine distinct Hb transcripts; four corresponding to the α Hb gene family and five to the β Hb gene family. To gain insights about the Hb genes encoding these transcripts, genomic sequence data was generated from heterozygous (HbI-1/2) parents and fifteen progeny; five of each HbI type, i.e., HbI-1/1, HbI-1/2 and HbI-2/2. β Hb genes displayed more polymorphism than α Hb genes. Two major allele types (β1A and β1B) that differ by two linked non-synonymous substitutions (Met55Val and Lys62Ala) were found in the β1 Hb gene, and the distribution of these β1A and β1B alleles among individuals was congruent with that of the HbI-1 and HbI-2 alleles determined by protein gel electrophoresis. RT-PCR and Q-PCR analysis of the nine Hb genes indicates that all genes are expressed in adult fish, but their level of expression varies greatly; higher expression of almost all Hb genes was found in individuals displaying the HbI-2/2 electrophoretic type. Conclusion This study indicates that more Hb genes are present and expressed in adult Atlantic cod than previously

  7. Preliminary development of thermal nuclear cell homogenization code

    NASA Astrophysics Data System (ADS)

    Su'ud, Z.; Shafii, M. A.; Yudha, S. P.; Waris, A.; Rijal, K.

    2012-06-01

    Nuclear fuel cell homogenization for thermal reactors usually include three main parts, i.e., fast energy resonance part which usually adopt narrow resonance approximation to treat the resonance, low (intermediate) energy region in which the resonance can not be treated accurately using NR approximation and therefore we should use intermediate resonance treatment, and thermal energy region (very low) in which the effect of thermal must be treated properly. In n this study the application of the intermediate resonance approximation treatment for low energy nuclear resonance is discussed. The method is iterative based. As a sample the method is applied in U-235 low lying resonance and the result is presented and discussed.

  8. Homogeneous Pt-bimetallic Electrocatalysts

    SciTech Connect

    Wang, Chao; Chi, Miaofang; More, Karren Leslie; Markovic, Nenad; Stamenkovic, Vojislav

    2011-01-01

    Alloying has shown enormous potential for tailoring the atomic and electronic structures, and improving the performance of catalytic materials. Systematic studies of alloy catalysts are, however, often compromised by inhomogeneous distribution of alloying components. Here we introduce a general approach for the synthesis of monodispersed and highly homogeneous Pt-bimetallic alloy nanocatalysts. Pt{sub 3}M (where M = Fe, Ni, or Co) nanoparticles were prepared by an organic solvothermal method and then supported on high surface area carbon. These catalysts attained a homogeneous distribution of elements, as demonstrated by atomic-scale elemental analysis using scanning transmission electron microscopy. They also exhibited high catalytic activities for the oxygen reduction reaction (ORR), with improvement factors of 2-3 versus conventional Pt/carbon catalysts. The measured ORR catalytic activities for Pt{sub 3}M nanocatalysts validated the volcano curve established on extended surfaces, with Pt{sub 3}Co being the most active alloy.

  9. Upgrading of an activated sludge wastewater treatment plant by adding a moving bed biofilm reactor as pre-treatment and ozonation followed by biofiltration for enhanced COD reduction: design and operation experience.

    PubMed

    Kaindl, Nikolaus

    2010-01-01

    A paper mill producing 500,000 ton of graphic paper annually has an on-site wastewater treatment plant that treats 7,240,000 m³ of wastewater per year, mechanically first, then biologically and at last by ozonation. Increased paper production capacity led to higher COD load in the mill effluent while production of higher proportions of brighter products gave worse biodegradability. Therefore the biological capacity of the WWTP needed to be increased and extra measures were necessary to enhance the efficiency of COD reduction. The full scale implementation of one MBBR with a volume of 1,230 m³ was accomplished in 2000 followed by another MBBR of 2,475 m³ in 2002. An ozonation step with a capacity of 75 kg O₃/h was added in 2004 to meet higher COD reduction demands during the production of brighter products and thus keeping the given outflow limits. Adding a moving bed biofilm reactor prior to the existing activated sludge step gives: (i) cost advantages when increasing biological capacity as higher COD volume loads of MBBRs allow smaller reactors than usual for activated sludge plants; (ii) a relief of strain from the activated sludge step by biological degradation in the MBBR; (iii) equalizing of peaks in the COD load and toxic effects before affecting the activated sludge step; (iv) a stable volume sludge index below 100 ml/g in combination with an optimization of the activated sludge step allows good sludge separation--an important condition for further treatment with ozone. Ozonation and subsequent bio-filtration pre-treated waste water provide: (i) reduction of hard COD unobtainable by conventional treatment; (ii) controllable COD reduction in a very wide range and therefore elimination of COD-peaks; (iii) reduction of treatment costs by combination of ozonation and subsequent bio-filtration; (iv) decrease of the color in the ozonated wastewater. The MBBR step proved very simple to operate as part of the biological treatment. Excellent control of the COD

  10. Homogeneous irradiation of the ''short-necked'' laryngeal cancer patient

    SciTech Connect

    Andrew, J.W.; Eapen, L.; Kulkarni, N.S.

    1984-04-01

    A technique for homogeneous irradiation of the ''short-necked'' laryngeal cancer patient is presented. The method is similar to a previously described technique in that inferiorly angled opposed lateral beams are used with tissue compensators and beam wedges. The advantages of the technique presented here are that the patient is treated supine rather than sitting and therapy simulation is more easily carried out. Experimental verification of the calculated radiation distributions was carried out in a water phantom having the same shape as the patient. These results show the extent of dose homogeneity and in addition show that neglecting tissue inhomogeneity, the measured and calculated dose distribuion agree within 2%.

  11. 75 FR 64955 - Fisheries of the Northeastern United States; Northeast Multispecies Fishery; Correction to Cod...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-21

    ... action published in the Federal Register on September 27, 2010 (75 FR 59154), reduced the GOM cod trip... stated in the action published on September 27, 2010 (75 FR 59154), and are not repeated here. This... United States; Northeast Multispecies Fishery; Correction to Cod Landing Limit for Handgear A Vessels...

  12. 50 CFR Table 5 to Part 679 - Steller Sea Lion Protection Areas Pacific Cod Fisheries Restrictions

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 50 Wildlife and Fisheries 13 2012-10-01 2012-10-01 false Steller Sea Lion Protection Areas Pacific Cod Fisheries Restrictions 5 Table 5 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND... Protection Areas Pacific Cod Fisheries Restrictions ER29DE10.006 ER29DE10.007 ER29DE10.008...

  13. 50 CFR Table 5 to Part 679 - Steller Sea Lion Protection Areas Pacific Cod Fisheries Restrictions

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Steller Sea Lion Protection Areas Pacific Cod Fisheries Restrictions 5 Table 5 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND... Protection Areas Pacific Cod Fisheries Restrictions ER20DE04.109 ER20DE04.110 ER20DE04.111...

  14. 50 CFR Table 5 to Part 679 - Steller Sea Lion Protection Areas Pacific Cod Fisheries Restrictions

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 50 Wildlife and Fisheries 13 2014-10-01 2014-10-01 false Steller Sea Lion Protection Areas Pacific Cod Fisheries Restrictions 5 Table 5 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND... Protection Areas Pacific Cod Fisheries Restrictions ER29DE10.006 ER29DE10.007 ER29DE10.008...

  15. 33 CFR 207.20 - Cape Cod Canal, Mass.; use, administration, and navigation.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 3 2012-07-01 2012-07-01 false Cape Cod Canal, Mass.; use, administration, and navigation. 207.20 Section 207.20 Navigation and Navigable Waters CORPS OF ENGINEERS, DEPARTMENT OF THE ARMY, DEPARTMENT OF DEFENSE NAVIGATION REGULATIONS § 207.20 Cape Cod Canal, Mass.; use, administration, and navigation. (a)...

  16. 33 CFR 207.20 - Cape Cod Canal, Mass.; use, administration, and navigation.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 3 2013-07-01 2013-07-01 false Cape Cod Canal, Mass.; use, administration, and navigation. 207.20 Section 207.20 Navigation and Navigable Waters CORPS OF ENGINEERS, DEPARTMENT OF THE ARMY, DEPARTMENT OF DEFENSE NAVIGATION REGULATIONS § 207.20 Cape Cod Canal, Mass.; use, administration, and navigation. (a)...

  17. 33 CFR 207.20 - Cape Cod Canal, Mass.; use, administration, and navigation.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 3 2014-07-01 2014-07-01 false Cape Cod Canal, Mass.; use, administration, and navigation. 207.20 Section 207.20 Navigation and Navigable Waters CORPS OF ENGINEERS, DEPARTMENT OF THE ARMY, DEPARTMENT OF DEFENSE NAVIGATION REGULATIONS § 207.20 Cape Cod Canal, Mass.; use, administration, and navigation. (a)...

  18. [Effect of economic structure adjustment on pollution emission: a case study of COD].

    PubMed

    Li, Ming-Sheng; Zhou, Lei; Chen, Yuan-Hang; Li, Qian; Zhang, Jian-Hui

    2014-08-01

    Economic structure adjustment is an important means to reduce the emissions of pollutants. For quantitative analysis of the effect of economic structure adjustment on the reduction of pollution emission, the country was divided into four sub-regions, eastern, northeastern, central and western, and the industry was divided into 39 sectors. Taking chemical oxygen demand (COD) as an example, the influences of regional structure and industry structure adjustment on total emission reduction and emission intensity were analyzed through building a model. The results showed that, in 2000-2010: (1) COD emissions in China were reduced from 1 445 x 10(4) t to 1 238 x 10(4) t, with a total emission of 14 950 x 10(4) t in 11 years, among which the emissions from eastern area occupied the largest proportion, accounting for 35.6%. (2) In the industrial COD emissions, emission from paper and paper products was the largest, accounting for 35.8% of the industrial COD emissions. (3) The economic structure changes in the four areas reduced the COD emissions by 420 x 10(4) t, resulting in a decrease of 1.29% in COD emission intensity. (4) Industrial internal structure changes reduced the COD emissions by 533 x 10(4) t, leading to a decrease of 3.1% in COD emission intensity. The research results have certain reference value in guiding the Chinese economic structure adjustment and achieving the targets of energy-saving and emission reduction. PMID:25338401

  19. Characterization of relA and codY mutants of Listeria monocytogenes: identification of the CodY regulon and its role in virulence.

    PubMed

    Bennett, Hayley J; Pearce, David M; Glenn, Sarah; Taylor, Clare M; Kuhn, Michael; Sonenshein, Abraham L; Andrew, Peter W; Roberts, Ian S

    2007-03-01

    Listeria monocytogenes is a Gram-positive intracellular parasite and the causative organism of human listeriosis. In this article we demonstrate that L. monocytogenes encodes a functional member of the CodY family of global regulatory proteins that is responsive to both GTP and branched chain amino acids. By transcript analyses we identified the CodY regulon in L. monocytogenes and demonstrated that it comprises genes involved in amino acid metabolism, nitrogen assimilation as well as genes involved in sugar uptake and incorporation, indicating a role for CodY in L. monocytogenes in both carbon and nitrogen assimilation. A DeltarelA mutation reduced expression of the CodY regulon in early stationary phase and introduction of a DeltacodY mutation into a DeltarelA strain restored virulence. These data indicate that the avirulence of the DeltarelA mutant can in part be explained by the continued repression of the CodY regulon. The phenotypes of DeltarelA and DeltacodY mutants were studied in J774.A1 and Caco-2 cells and the DeltarelA mutation shown to effect intracellular growth. These results provide the first direct evidence that the activity of a CodY-type protein influences pathogenesis and provides new information on the physiological adaptation of L. monocytogenes to post-exponential phase growth and virulence. PMID:17302820

  20. Effect of Sub-Lethal Exposure to Ultraviolet Radiation on the Escape Performance of Atlantic Cod Larvae (Gadus morhua)

    PubMed Central

    Fukunishi, Yuichi; Browman, Howard I.; Durif, Caroline M. F.; Bjelland, Reidun M.; Skiftesvik, Anne Berit

    2012-01-01

    The amount of ultraviolet (UV) radiation reaching the earth's surface has increased due to depletion of the ozone layer. Several studies have reported that UV radiation reduces survival of fish larvae. However, indirect and sub-lethal impacts of UV radiation on fish behavior have been given little consideration. We observed the escape performance of larval cod (24 dph, SL: 7.6±0.2 mm; 29 dph, SL: 8.2±0.3 mm) that had been exposed to sub-lethal levels of UV radiation vs. unexposed controls. Two predators were used (in separate experiments): two-spotted goby (Gobiusculus flavescens; a suction predator) and lion's mane jellyfish (Cyanea capillata; a “passive" ambush predator). Ten cod larvae were observed in the presence of a predator for 20 minutes using a digital video camera. Trials were replicated 4 times for goby and 5 times for jellyfish. Escape rate (total number of escapes/total number of attacks ×100), escape distance and the number of larvae remaining at the end of the experiment were measured. In the experiment with gobies, in the UV-treated larvae, both escape rate and escape distance (36%, 38±7.5 mm respectively) were significantly lower than those of control larvae (75%, 69±4.7 mm respectively). There was a significant difference in survival as well (UV: 35%, Control: 63%). No apparent escape response was observed, and survival rate was not significantly different, between treatments (UV: 66%, Control: 74%) in the experiment with jellyfish. We conclude that the effect and impact of exposure to sub-lethal levels of UV radiation on the escape performance of cod larvae depends on the type of predator. Our results also suggest that prediction of UV impacts on fish larvae based only on direct effects are underestimations. PMID:22536406

  1. In situ formed catalytically active ruthenium nanocatalyst in room temperature dehydrogenation/dehydrocoupling of ammonia-borane from Ru(cod)(cot) precatalyst.

    PubMed

    Zahmakiran, Mehmet; Ayvalı, Tuğçe; Philippot, Karine

    2012-03-20

    The development of simply prepared and effective catalytic materials for dehydrocoupling/dehydrogenation of ammonia-borane (AB; NH(3)BH(3)) under mild conditions remains a challenge in the field of hydrogen economy and material science. Reported herein is the discovery of in situ generated ruthenium nanocatalyst as a new catalytic system for this important reaction. They are formed in situ during the dehydrogenation of AB in THF at 25 °C in the absence of any stabilizing agent starting with homogeneous Ru(cod)(cot) precatalyst (cod = 1,5-η(2)-cyclooctadiene; cot = 1,3,5-η(3)-cyclooctatriene). The preliminary characterization of the reaction solutions and the products was done by using ICP-OES, ATR-IR, TEM, XPS, ZC-TEM, GC, EA, and (11)B, (15)N, and (1)H NMR, which reveal that ruthenium nanocatalyst is generated in situ during the dehydrogenation of AB from homogeneous Ru(cod)(cot) precatalyst and B-N polymers formed at the initial stage of the catalytic reaction take part in the stabilization of this ruthenium nanocatalyst. Moreover, following the recently updated approach (Bayram, E.; et al. J. Am. Chem. Soc.2011, 133, 18889) by performing Hg(0), CS(2) poisoning experiments, nanofiltration, time-dependent TEM analyses, and kinetic investigation of active catalyst formation to distinguish single metal or in the present case subnanometer Ru(n) cluster-based catalysis from polymetallic Ru(0)(n) nanoparticle catalysis reveals that in situ formed Ru(n) clusters (not Ru(0)(n) nanoparticles) are kinetically dominant catalytically active species in our catalytic system. The resulting ruthenium catalyst provides 120 total turnovers over 5 h with an initial turnover frequency (TOF) value of 35 h(-1) at room temperature with the generation of more than 1.0 equiv H(2) at the complete conversion of AB to polyaminoborane (PAB; [NH(2)BH(2)](n)) and polyborazylene (PB; [NHBH](n)) units. PMID:22356554

  2. CodY Regulates Expression of the Bacillus subtilis Extracellular Proteases Vpr and Mpr

    PubMed Central

    Barbieri, Giulia; Voigt, Birgit; Albrecht, Dirk; Hecker, Michael; Albertini, Alessandra M.; Sonenshein, Abraham L.; Ferrari, Eugenio

    2015-01-01

    ABSTRACT CodY is a global transcriptional regulator in low-G+C Gram-positive bacteria that is responsive to GTP and branched-chain amino acids. By interacting with its two cofactors, it is able to sense the nutritional and energetic status of the cell and respond by regulating expression of adaptive genetic programs. In Bacillus subtilis, more than 200 genes, including those for peptide transporters, intracellular proteolytic enzymes, and amino acid degradative pathways, are controlled by CodY. In this study, we demonstrated that expression of two extracellular proteases, Vpr and Mpr, is negatively controlled by CodY. By gel mobility shift and DNase I footprinting assays, we showed that CodY binds to the regulatory regions of both genes, in the vicinity of their transcription start points. The mpr gene is also characterized by the presence of a second, higher-affinity CodY-binding site located at the beginning of its coding sequence. Using strains carrying vpr- or mpr-lacZ transcriptional fusions in which CodY-binding sites were mutated, we demonstrated that repression of both protease genes is due to the direct effect by CodY and that the mpr internal site is required for regulation. The vpr promoter is a rare example of a sigma H-dependent promoter that is regulated by CodY. In a codY null mutant, Vpr became one of the more abundant proteins of the B. subtilis exoproteome. IMPORTANCE CodY is a global transcriptional regulator of metabolism and virulence in low-G+C Gram-positive bacteria. In B. subtilis, more than 200 genes, including those for peptide transporters, intracellular proteolytic enzymes, and amino acid degradative pathways, are controlled by CodY. However, no role for B. subtilis CodY in regulating expression of extracellular proteases has been established to date. In this work, we demonstrate that by binding to the regulatory regions of the corresponding genes, B. subtilis CodY negatively controls expression of Vpr and Mpr, two extracellular

  3. Role of H2O2 in the fluctuating patterns of COD (chemical oxygen demand) during the treatment of palm oil mill effluent (POME) using pilot scale triple frequency ultrasound cavitation reactor.

    PubMed

    Manickam, Sivakumar; Abidin, Norhaida binti Zainal; Parthasarathy, Shridharan; Alzorqi, Ibrahim; Ng, Ern Huay; Tiong, Timm Joyce; Gomes, Rachel L; Ali, Asgar

    2014-07-01

    Palm oil mill effluent (POME) is a highly contaminating wastewater due to its high chemical oxygen demand (COD) and biochemical oxygen demand (BOD). Conventional treatment methods require longer residence time (10-15 days) and higher operating cost. Owing to this, finding a suitable and efficient method for the treatment of POME is crucial. In this investigation, ultrasound cavitation technology has been used as an alternative technique to treat POME. Cavitation is the phenomenon of formation, growth and collapse of bubbles in a liquid. The end process of collapse leads to intense conditions of temperature and pressure and shock waves which assist various physical and chemical transformations. Two different ultrasound systems i.e. ultrasonic bath (37 kHz) and a hexagonal triple frequency ultrasonic reactor (28, 40 and 70 kHz) of 15 L have been used. The results showed a fluctuating COD pattern (in between 45,000 and 60,000 mg/L) while using ultrasound bath alone, whereas a non-fluctuating COD pattern with a final COD of 27,000 mg/L was achieved when hydrogen peroxide was introduced. Similarly for the triple frequency ultrasound reactor, coupling all the three frequencies resulted into a final COD of 41,300 mg/L compared to any other individual or combination of two frequencies. With the possibility of larger and continuous ultrasonic cavitational reactors, it is believed that this could be a promising and a fruitful green process engineering technique for the treatment of POME. PMID:24485395

  4. Homogeneous catalytic wet-air oxidation for the treatment of textile wastewater

    SciTech Connect

    Lei, L. Chen, G.; Hu, X.; Yue, P.L.

    2000-04-01

    An extensive series of experiments was performed to identify suitable catalysts to increase the reaction rate of wet-air oxidation of textile wastewater t relatively mild temperatures an pressures. Wastewater types treated included natural-fiber desizing wastewater, synthetic-fiber desizing wastewater, and printing and dyeing wastewater. Experimental results indicated that all catalysts tested in this investigation significantly increased the chemical oxygen demand (COD) and total organic carbon (TOC) removal rates and total COD and TOC removals. Of all catalysts tested, copper salts were the most effective. Anions in the slat solutions played a role in the catalytic process. Nitrate ions were more effective than sulfate ions. Similarly, copper nitrates were more effective than copper sulfates. A mixture of salts containing different metals performed better than any single salt.

  5. Atlantic cod (Gadus morhua) CC chemokines: Diversity and expression analysis.

    PubMed

    Borza, Tudor; Stone, Cynthia; Rise, Matthew L; Bowman, Sharen; Johnson, Stewart C

    2010-08-01

    Chemokines are a large, diverse group of small cytokines that can be classified into several families, including the CC chemokines that are characterized by two adjacent cysteines near their amino terminus. CC chemokines play a pivotal role in host defense mechanisms by inducing leukocyte chemotaxis under physiological and inflammatory conditions. Analysis of CC chemokines from teleost fishes indicates that the number of CC chemokine genes and their tissue expression patterns vary largely in this group of vertebrates. Here we describe 32 distinct CC chemokine sequences from Atlantic cod (Gadus morhua) identified by analysis of approximately 206,000 ESTs. Phylogenetic analysis of Atlantic cod CC chemokines placed these sequences in seven clusters, most likely resulting from species-specific gene duplications, and two unique sequences; 12 of these CC chemokines, including at least one member of each cluster, were analyzed by QPCR using four immune-related tissues (head kidney, liver, spleen and blood) obtained from unstimulated, polyriboinosinic polyribocytidylic acid (pIC)-stimulated and formalin-killed atypical Aeromonas salmonicida-stimulated individuals. EST abundance and QPCR analysis indicate that the expression of closely related CC chemokines GmSCYA101 and GmSCYA102, GmSCYA108 and GmSCYA109 or GmSCYA122 and GmSCYA124 can be highly tissue-specific despite substantial sequence identity. Stimulation with the viral mimic pIC or formalin-killed atypical A. salmonicida resulted in increased expression of most of the CC chemokines, indicating that they can be regarded as either inducible (inflammatory) or dual-function rather than constitutive (homeostatic). Tissue specificity, and the level of induction, varied broadly; for example, GmSCYA123 was at least 4-fold up-regulated by both inducers in all tissues analyzed, whereas pIC increased the expression of GmSCYA124 in liver over 1500 times. PMID:20381521

  6. Alternative adaptive immunity strategies: coelacanth, cod and shark immunity.

    PubMed

    Buonocore, Francesco; Gerdol, Marco

    2016-01-01

    The advent of high throughput sequencing has permitted to investigate the genome and the transcriptome of novel non-model species with unprecedented depth. This technological advance provided a better understanding of the evolution of adaptive immune genes in gnathostomes, revealing several unexpected features in different fish species which are of particular interest. In the present paper, we review the current understanding of the adaptive immune system of the coelacanth, the elephant shark and the Atlantic cod. The study of coelacanth, the only living extant of the long thought to be extinct Sarcopterygian lineage, is fundamental to bring new insights on the evolution of the immune system in higher vertebrates. Surprisingly, coelacanths are the only known jawed vertebrates to lack IgM, whereas two IgD/W loci are present. Cartilaginous fish are of great interest due to their basal position in the vertebrate tree of life; the genome of the elephant shark revealed the lack of several important immune genes related to T cell functions, which suggest the existence of a primordial set of TH1-like cells. Finally, the Atlantic cod lacks a functional major histocompatibility II complex, but balances this evolutionary loss with the expansion of specific gene families, including MHC I, Toll-like receptors and antimicrobial peptides. Overall, these data point out that several fish species present an unconventional adaptive immune system, but the loss of important immune genes is balanced by adaptive evolutionary strategies which still guarantee the establishment of an efficient immune response against the pathogens they have to fight during their life. PMID:26423359

  7. Chemical quality of ground water on Cape Cod, Massachusetts

    USGS Publications Warehouse

    Frimpter, M.H.; Gay, F.B.

    1979-01-01

    Cape Cod is a 440 square mile hook-shaped peninsula which extends 40 miles into the Atlantic. Freshwater in Pleistocene sand and gravel deposits is the source of supply for nearly 100 municipal and thousands of private domestic wells. Most ground water on Cape Cod is of good chemical quality for drinking and other uses. It is characteristically low in dissolved solids and is soft. In 90 percent of the samples analyzed, dissolved solids were less than 100 mg/l (milligrams per liter) and pH was less than 7.0. Highway deicing salt, sea-water flooding due to storms , and saltwater intrusion due to ground-water withdrawal are sources of sodium chloride contamination. Chloride concentrations have increased from 20 to 140 mg/l, owing to saltwater intrusion at Provincetown 's wells in Truro. In Yarmouth, contaminated ground water near a salt-storage area contained as much as 1,800 mg/l chloride. Heavy metals, insecticides, and herbicides were not found at concentrations above the U.S. Environmental Protection Agency 's recommended limits for public drinking-water supplies, but iron and manganese in some samples exceeded those limits. Ninety percent of 84 samples analyzed for nitrate reported as nitrogen contained less than 1.3 mg/l and 80 percent contained 0.5 mg/l or less of nitrate as nitrogen. Water containing nitrogen in excess of 0.5 mg/l has probably been affected by municipal or domestic sewage or fertilizer, and water with less than this amount may have been affected by them. (Woodard-USGS)

  8. [Omega-3: from cod-liver oil to nutrigenomics].

    PubMed

    Caramia, G

    2008-08-01

    The leading role of cod-liver oil on rickets was a relevant factor in the knowledge of this disease. In 1922 the preventive and therapeutic value of cod-liver oil and sunlight against rickets in young infants was confirmed. The seasonal variation in the incidence of rickets, the role of skin pigmentation, of diet and the fact that breast milk was not an adequate source of vitamin D were understood. The discovery of essential fatty acids omega-6 and omega-3 have shown that deficiencies, mainly of omega-3 long chain polyunsaturated fatty acids, result in visual and cognitive impairment and disturbances in mental functions in infants and also in cognitive function in adults, as fatty acids are beneficial to vascular health and may forestall cerebrovascular disease and thus dementia. An adequate ratio of n-6 and n-3 fatty acids may promote a healthier balance of eicosanoids, which would protect membrane function with a nutraceutical function. Dietary lipids not only influence the biophysical state of the cell membranes but, via direct and indirect routes, they also act on multiple pathways including signalling, gene and protein activities, protein modifications and they probably play important role in modulating protein aggregation. Significant advances have been made in understanding the relation between dietary factors and inflammation, which is a central component of many chronic diseases, including coronary artery disease, rheumatoid arthritis, cancer prevention. However, the identification of those who will or will not benefit from dietary intervention strategies remains a major obstacle. Adequate knowledge about how the responses depend on an individual's genetic background (nutrigenetic effects), the cumulative effects of food components on genetic expression profiles through nutrigenomics mechanism, may assist in identifying responders and non-responders. Thus, fish and fish oil consumption might encourage brain development and gene expression to brain

  9. Comparative study on the treatment of raw and biologically treated textile effluents through submerged nanofiltration.

    PubMed

    Chen, Qing; Yang, Ying; Zhou, Mengsi; Liu, Meihong; Yu, Sanchuan; Gao, Congjie

    2015-03-01

    Raw and biologically treated textile effluents were submerged filtrated using lab-fabricated hollow fiber nanofiltration membrane with a molecular weight cut-off of about 650 g/mol. Permeate flux, chemical oxygen demand (COD) reduction, color removal, membrane fouling, and cleaning were investigated and compared by varying the trans-membrane pressure (TMP) and volume concentrating factor (VCF). It was found that both raw and biologically treated textile effluents could be efficiently treated through submerged nanofiltration. The increase of TMP resulted in a decline in water permeability, COD reduction, color removal, and flux recovery ratio, while the increase of VCF resulted in both increased COD reduction and color removal. Under the TMP of 0.4 bar and VCF of 5.0, fluxes of 1.96 and 2.59 l/m(2)h, COD reductions of 95.7 and 94.2%, color removals of 99.0, and 97.3% and flux recovery ratios of 91.1 and 92.9% could be obtained in filtration of raw and biologically treated effluents, respectively. After filtration, the COD and color contents of the raw effluent declined sharply from 1780 to 325 mg/l and 1.200 to 0.060 Abs/cm, respectively, while for the biologically treated effluent, they decreased from 780 to 180 mg/l and 0.370 to 0.045 Abs/cm, respectively. PMID:25463225

  10. 76 FR 12606 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Less Than 60...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-03-08

    ... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Less Than 60 Feet (18.3 m) Length Overall Using... for Pacific cod by catcher vessels less than 60 feet (18.3 m) length overall (LOA) using jig or...

  11. Host size-dependent anisakid infection in Baltic cod Gadus morhua associated with differential food preferences.

    PubMed

    Zuo, Shaozhi; Huwer, Bastian; Bahlool, Qusay; Al-Jubury, Azmi; Daugbjerg Christensen, Nanna; Korbut, Rozalia; Kania, Per; Buchmann, Kurt

    2016-06-15

    A significant increase in the infection level of Baltic cod Gadus morhua with the anisakid nematode larvae Contracaecum osculatum and Pseudoterranova decipiens has been recorded during recent years due to the expanding local population of grey seals Halichoerus grypus, which act as final hosts for these parasites. Here, we report from an investigation of 368 cod (total length [TL] 6-49 cm; caught in ICES Subdivision 25) that the infection level of juvenile cod (TL 6-30 cm) with larvae of C. osculatum and P. decipiens is absent or very low, whereas it increases drastically in larger cod (TL 31-48 cm). A third nematode Hysterothylacium aduncum was rarely found. The study indicates that the prey animals for large cod act as transport hosts for the parasite larvae. Analyses of stomach contents of cod caught in the same area (2007-2014) showed that small benthic organisms (including polychaetes Harmothoë sarsi) are preferred food items by small cod, the isopod Saduria entomon is taken by all size classes, and sprat Sprattus sprattus are common prey items for cod larger than 30 cm. Parasitological investigations (microscopic and molecular analyses) of H. sarsi (100 specimens) and S. entomon (40 specimens) did not reveal infection in these invertebrates, but 11.6% of sprat (265 specimens examined) was shown to be infected with 1-8 C. osculatum third stage larvae per fish. Analyses of sprat stomach contents confirmed that copepods and cladocerans are the main food items of sprat. These observations suggest that the C. osculatum life cycle in the Baltic Sea includes grey seals as final hosts, sprat as the first transport host and cod as second transport host. It may be speculated that sprat obtain infection by feeding on copepods and/or cladocerans, which could serve as the first intermediate hosts. One cannot exclude the possibility that the size-dependent C. osculatum infection of cod may contribute (indirectly or directly) to the differential mortality of larger cod

  12. Movement and fate of solutes in a plume of sewage-contaminated ground water, Cape Cod, Massachusetts

    USGS Publications Warehouse

    LeBlanc, D. R., (Edited By)

    1984-01-01

    The U.S. Geological Survey (USGS) has begun a nationwide program to study the fate of toxic wastes in groundwater. Several sites where groundwater is known to be contaminated are being studied by interdisciplinary teams of geohydrologists, chemists, and microbiologists. The objective of these studies is to obtain a thorough quantitative understanding of the physical, chemical, and biological processes of contaminant generation, migration, and attenuation in aquifers. One of the sites being studied by the USGS under this program is a plume of sewage contaminated groundwater on Cape Cod, Massachusetts. The plume was formed by land disposal of treated sewage to a glacial outwash aquifer since 1936. This report summarizes results obtained during the first year of research at the Cape Cod s under the USGS Toxic-Waste Ground-Water Contamination Program. The seven papers included in this volume were presented at the Toxic Waste Technical Meeting, Tucson, Arizona, in March 1984. They provide an integrated view of the subsurface distribution of contaminants based on the first year of research and discuss hypotheses concerning the transport processes that affect the movement of contaminants in the plume. (See W89-09053 thru W89-09059) (Lantz-PTT)

  13. 76 FR 4551 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Non-American Fisheries Act...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-01-26

    ... groundfish of the GOA (75 FR 11749, March 12, 2010) and inseason adjustment (76 FR 469, January 5, 2011). In... Economic Zone Off Alaska; Pacific Cod by Non-American Fisheries Act Crab Vessels Harvesting Pacific Cod for...: Temporary rule; closure. SUMMARY: NMFS is prohibiting directed fishing for Pacific cod by non-...

  14. 76 FR 66196 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Harvesting Pacific...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-10-26

    ... GOA (76 FR 11111, March 1, 2011). In accordance with Sec. 679.20(d)(1)(i), the Administrator, Alaska... Economic Zone Off Alaska; Pacific Cod by Vessels Harvesting Pacific Cod for Processing by the Inshore...; closure. SUMMARY: NMFS is prohibiting directed fishing for Pacific cod by vessels harvesting Pacific...

  15. 75 FR 7205 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Non-American Fisheries Act...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-18

    ... groundfish of the GOA (74 FR 7333, February 17, 2009) and inseason adjustment (74 FR 68713, December 29, 2009... Economic Zone Off Alaska; Pacific Cod by Non-American Fisheries Act Crab Vessels Catching Pacific Cod for...: Temporary rule; closure. SUMMARY: NMFS is prohibiting directed fishing for Pacific cod by non-...

  16. 75 FR 3875 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Non-American Fisheries Act...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-01-25

    ... of the GOA (74 FR 7333, February 17, 2009) and inseason adjustment (74 FR 68713, December 29, 2009... Economic Zone Off Alaska; Pacific Cod by Non-American Fisheries Act Crab Vessels Catching Pacific Cod for...: Temporary rule; closure. SUMMARY: NMFS is prohibiting directed fishing for Pacific cod by non-...

  17. 76 FR 3045 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Non-American Fisheries Act...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-01-19

    ... FR 11749, March 12, 2010) and inseason adjustment (76 FR 469, January 5, 2011). In accordance with... Economic Zone Off Alaska; Pacific Cod by Non-American Fisheries Act Crab Vessels Harvesting Pacific Cod for...: Temporary rule; closure. SUMMARY: NMFS is prohibiting directed fishing for Pacific cod by non-...

  18. 75 FR 8841 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Non-American Fisheries Act...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-26

    ... specifications for groundfish of the GOA (74 FR 7333, February 17, 2009) and inseason adjustment (74 FR 68713... Economic Zone Off Alaska; Pacific Cod by Non-American Fisheries Act Crab Vessels Catching Pacific Cod for...: Temporary rule; closure. SUMMARY: NMFS is prohibiting directed fishing for Pacific cod by non-...

  19. 76 FR 73513 - Fisheries of the Exclusive Economic Zone Off Alaska; Revisions to Pacific Cod Fishing in the...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-11-29

    .... These three FMP amendments are the BSAI FMP Amendment 67 Pacific cod LLP endorsement (67 FR 18129, April 15, 2002), the BSAI FMP Amendment 85 Pacific cod sector allocations (72 FR 50788, September 4, 2007), and the BSAI hook-and-line C/P sector Pacific cod capacity reduction program (71 FR 57696,...

  20. 78 FR 18896 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Less Than 60...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-28

    ... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Less Than 60 feet (18.3 meters) Length Overall... directed fishing for Pacific cod by catcher vessels less than 60 feet (18.3 meters (m)) length overall (LOA... cod for catcher vessels less than 60 feet (18.3 m) LOA using jig or hook-and-line gear in the...

  1. ISOTOPE METHODS IN HOMOGENEOUS CATALYSIS.

    SciTech Connect

    BULLOCK,R.M.; BENDER,B.R.

    2000-12-01

    The use of isotope labels has had a fundamentally important role in the determination of mechanisms of homogeneously catalyzed reactions. Mechanistic data is valuable since it can assist in the design and rational improvement of homogeneous catalysts. There are several ways to use isotopes in mechanistic chemistry. Isotopes can be introduced into controlled experiments and followed where they go or don't go; in this way, Libby, Calvin, Taube and others used isotopes to elucidate mechanistic pathways for very different, yet important chemistries. Another important isotope method is the study of kinetic isotope effects (KIEs) and equilibrium isotope effect (EIEs). Here the mere observation of where a label winds up is no longer enough - what matters is how much slower (or faster) a labeled molecule reacts than the unlabeled material. The most careti studies essentially involve the measurement of isotope fractionation between a reference ground state and the transition state. Thus kinetic isotope effects provide unique data unavailable from other methods, since information about the transition state of a reaction is obtained. Because getting an experimental glimpse of transition states is really tantamount to understanding catalysis, kinetic isotope effects are very powerful.

  2. Heterogeneous nucleation or homogeneous nucleation?

    NASA Astrophysics Data System (ADS)

    Liu, X. Y.

    2000-06-01

    The generic heterogeneous effect of foreign particles on three dimensional nucleation was examined both theoretically and experimentally. It shows that the nucleation observed under normal conditions includes a sequence of progressive heterogeneous processes, characterized by different interfacial correlation function f(m,x)s. At low supersaturations, nucleation will be controlled by the process with a small interfacial correlation function f(m,x), which results from a strong interaction and good structural match between the foreign bodies and the crystallizing phase. At high supersaturations, nucleation on foreign particles having a weak interaction and poor structural match with the crystallizing phase (f(m,x)→1) will govern the kinetics. This frequently leads to the false identification of homogeneous nucleation. Genuine homogeneous nucleation, which is the up-limit of heterogeneous nucleation, may not be easily achievable under gravity. In order to check these results, the prediction is confronted with nucleation experiments of some organic and inorganic crystals. The results are in excellent agreement with the theory.

  3. Evaluation of granular anaerobic ammonium oxidation process for the disposal of pre-treated swine manure

    PubMed Central

    Yang, Ning

    2014-01-01

    With rising environmental concerns on potable water safety and eutrophication, increased media attention and tighter environmental regulations, managing animal waste in an environmentally responsible and economically feasible way can be a challenge. In this study, the possibility of using granular anammox process for ammonia removal from swine waste treatment water was investigated. A rapid decrease of NO2−–N and NH4+–N was observed during incubation with wastewater from an activated sludge deodorization reactor and anaerobic digestion-partial oxidation treatment process treating swine manure and its corresponding control artificial wastewaters. Ammonium removal dropped from 98.0 ± 0.6% to 66.9 ± 2.7% and nearly absent when the organic load in the feeding increased from 232 mg COD/L to 1160 mg COD/L and 2320 mg COD/L. The presence of organic carbon had limited effect on nitrite and total nitrogen removal. At a COD to N ratio of 0.9, COD inhibitory organic load threshold concentration was 727 mg COD/L. Mass balance indicated that denitrifiers played an important role in nitrite, nitrate and organic carbon removal. These results demonstrated that anammox system had the potential to effectively treat swine manure that can achieve high nitrogen standards at reduced costs. PMID:24765570

  4. High frequency homogenization for structural mechanics

    NASA Astrophysics Data System (ADS)

    Nolde, E.; Craster, R. V.; Kaplunov, J.

    2011-03-01

    We consider a net created from elastic strings as a model structure to investigate the propagation of waves through semi-discrete media. We are particularly interested in the development of continuum models, valid at high frequencies, when the wavelength and each cell of the net are of similar order. Net structures are chosen as these form a general two-dimensional example, encapsulating the essential physics involved in the two-dimensional excitation of a lattice structure whilst retaining the simplicity of dealing with elastic strings. Homogenization techniques are developed here for wavelengths commensurate with the cellular scale. Unlike previous theories, these techniques are not limited to low frequency or static regimes, and lead to effective continuum equations valid on a macroscale with the details of the cellular structure encapsulated only through integrated quantities. The asymptotic procedure is based upon a two-scale approach and the physical observation that there are frequencies that give standing waves, periodic with the period or double-period of the cell. A specific example of a net created by a lattice of elastic strings is constructed, the theory is general and not reliant upon the net being infinite, none the less the infinite net is a useful special case for which Bloch theory can be applied. This special case is explored in detail allowing for verification of the theory, and highlights the importance of degenerate cases; the specific example of a square net is treated in detail. An additional illustration of the versatility of the method is the response to point forcing which provides a stringent test of the homogenized equations; an exact Green's function for the net is deduced and compared to the asymptotics.

  5. Interactive regulation by the Bacillus subtilis global regulators CodY and ScoC.

    PubMed

    Belitsky, Boris R; Barbieri, Giulia; Albertini, Alessandra M; Ferrari, Eugenio; Strauch, Mark A; Sonenshein, Abraham L

    2015-08-01

    CodY and ScoC are Bacillus subtilis transcriptional regulators that control the expression of dozens of genes and operons. Using scoC-lacZ fusions and DNA-binding experiments, we show here that scoC is directly repressed by CodY. This effect creates multiple forms of cascade regulation. For instance, expression of the dtpT gene, which is directly and negatively controlled by ScoC and encodes a putative oligopeptide permease, was activated indirectly by CodY due to CodY-mediated repression of scoC. The opp operon, which encodes an oligopeptide permease that is essential for sporulation and genetic competence development, proved to be a direct target of repression by both ScoC and CodY but was not significantly affected in codY or scoC single mutants. The combined actions of CodY and ScoC maintain opp repression when either one of the regulators loses activity but limit the level of repression to that provided by one of the regulators acting alone. Under conditions of nitrogen limitation, repression by ScoC of dtpT and opp was partly prevented by TnrA. Thus, the functioning of ScoC is determined by other transcription factors via modulation of its expression or DNA binding. PMID:25966844

  6. Interactive Regulation by the Bacillus subtilis Global Regulators CodY and ScoC

    PubMed Central

    BELITSKY, BORIS R.; BARBIERI, GIULIA; ALBERTINI, ALESSANDRA M.; FERRARI, EUGENIO; STRAUCH, MARK A.; SONENSHEIN, ABRAHAM L.

    2015-01-01

    SUMMARY CodY and ScoC are Bacillus subtilis transcriptional regulators that control the expression of dozens of genes and operons. Using scoC-lacZ fusions and DNA-binding experiments, we show here that scoC is directly repressed by CodY. This effect creates multiple forms of cascade regulation. For instance, expression of the dtpT gene, which is directly and negatively controlled by ScoC and encodes a putative oligopeptide permease, was activated indirectly by CodY due to CodY-mediated repression of scoC. The opp operon, which encodes an oligopeptide permease that is essential for sporulation and genetic competence development, proved to be a direct target of repression by both ScoC and CodY, but was not significantly affected in codY or scoC single mutants. The combined actions of CodY and ScoC maintain opp repression when either one of the regulators loses activity, but limit the level of repression to that provided by one of the regulators acting alone. Under conditions of nitrogen limitation, repression by ScoC of dtpT and opp was partly prevented by TnrA. Thus, the functioning of ScoC is determined by other transcription factors via modulation of its expression or DNA binding. PMID:25966844

  7. Coupling of anaerobic digester and microbial fuel cell for COD removal and ammonia recovery.

    PubMed

    Kim, Taeyoung; An, Junyeong; Jang, Jae Kyung; Chang, In Seop

    2015-11-01

    Microbial fuel cells (MFCs) were investigated for use in removing total ammonia nitrogen (TAN) and residual COD from effluent digested in an anaerobic digester (AD) fed with actual swine wastewater for 32 days in batch mode. Cumulative COD removal in the AD was as high as 59,647±2096 mg/L (80.5% removed), whereas TAN removal in the AD was negligible at 296±116 mg-N/L (5.8% removed), causing a decrease in the COD/TAN ratio from 14.5 to 3.0. In a subsequent MFC system, 77.5% of TAN was removed at 36 days, leading to an increase in COD/TAN ratio from 4.6 to 8.1. As a result, the COD in the anode was further reduced from 19,319±417 mg/L to 7519±554 mg/L (61.1% removed). From these results, removing the TAN in MFCs was found to increase the COD/TAN ratio, with the COD being further degraded. PMID:26142819

  8. From multispectral imaging of autofluorescence to chemical and sensory images of lipid oxidation in cod caviar paste.

    PubMed

    Airado-Rodríguez, Diego; Høy, Martin; Skaret, Josefine; Wold, Jens Petter

    2014-05-01

    The potential of multispectral imaging of autofluorescence to map sensory flavour properties and fluorophore concentrations in cod caviar paste has been investigated. Cod caviar paste was used as a case product and it was stored over time, under different headspace gas composition and light exposure conditions, to obtain a relevant span in lipid oxidation and sensory properties. Samples were divided in two sets, calibration and test sets, with 16 and 7 samples, respectively. A third set of samples was prepared with induced gradients in lipid oxidation and sensory properties by light exposure of certain parts of the sample surface. Front-face fluorescence emission images were obtained for excitation wavelength 382 nm at 11 different channels ranging from 400 to 700 nm. The analysis of the obtained sets of images was divided in two parts: First, in an effort to compress and extract relevant information, multivariate curve resolution was applied on the calibration set and three spectral components and their relative concentrations in each sample were obtained. The obtained profiles were employed to estimate the concentrations of each component in the images of the heterogeneous samples, giving chemical images of the distribution of fluorescent oxidation products, protoporphyrin IX and photoprotoporphyrin. Second, regression models for sensory attributes related to lipid oxidation were constructed based on the spectra of homogeneous samples from the calibration set. These models were successfully validated with the test set. The models were then applied for pixel-wise estimation of sensory flavours in the heterogeneous images, giving rise to sensory images. As far as we know this is the first time that sensory images of odour and flavour are obtained based on multispectral imaging. PMID:24720964

  9. Orthogonality Measurement for Homogenous Projects-Bases

    ERIC Educational Resources Information Center

    Ivan, Ion; Sandu, Andrei; Popa, Marius

    2009-01-01

    The homogenous projects-base concept is defined. Next, the necessary steps to create a homogenous projects-base are presented. A metric system is built, which then will be used for analyzing projects. The indicators which are meaningful for analyzing a homogenous projects-base are selected. The given hypothesis is experimentally verified. The…

  10. Counteractive balancing of transcriptome expression involving CodY and CovRS in Streptococcus pyogenes.

    PubMed

    Kreth, Jens; Chen, Zhiyun; Ferretti, Joseph; Malke, Horst

    2011-08-01

    Streptococcus pyogenes (group A streptococcus [GAS]) responds to environmental changes in a manner that results in an adaptive regulation of the transcriptome. The objective of the present study was to understand how two global transcriptional regulators, CodY and CovRS, coordinate the transcriptional network in S. pyogenes. Results from expression microarray data and quantitative reverse transcription-PCR (qRT-PCR) showed that the global regulator CodY controls the expression of about 250 genes, or about 17% of the genome of strain NZ131. Additionally, the codY gene was shown to be negatively autoregulated, with its protein binding directly to the promoter region with a CodY binding site. In further studies, the influence of codY, covRS, and codY-covRS mutations on gene expression was analyzed in growth phase-dependent conditions using C medium, reported to mimic nutritional abundance and famine conditions similar to those found during host GAS infection. Additional biological experiments of several virulence phenotypes, including pilin production, biofilm formation, and NAD glycohydrolase activity, demonstrated the role that both CodY and CovRS play in their regulation. Correlation analysis of the overall data revealed that, in exponentially growing cells, CodY and CovRS act in opposite directions, with CodY stimulating and CovRS repressing a substantial fraction of the core genome, including many virulence factors. This is the first report of counteractive balancing of transcriptome expression by global transcription regulators and provides important insight into how GAS modulates gene expression by integrating important extracellular and intracellular information. PMID:21705595

  11. Numerical experiments in homogeneous turbulence

    NASA Technical Reports Server (NTRS)

    Rogallo, R. S.

    1981-01-01

    The direct simulation methods developed by Orszag and Patternson (1972) for isotropic turbulence were extended to homogeneous turbulence in an incompressible fluid subjected to uniform deformation or rotation. The results of simulations for irrotational strain (plane and axisymmetric), shear, rotation, and relaxation toward isotropy following axisymmetric strain are compared with linear theory and experimental data. Emphasis is placed on the shear flow because of its importance and because of the availability of accurate and detailed experimental data. The computed results are used to assess the accuracy of two popular models used in the closure of the Reynolds-stress equations. Data from a variety of the computed fields and the details of the numerical methods used in the simulation are also presented.

  12. Challenges of daily data homogenization

    NASA Astrophysics Data System (ADS)

    Gruber, C.; Auer, I.; Mestre, O.

    2009-04-01

    In recent years the growing demand of extreme value studies has led to the development of methods for the homogenisation of daily data. The behaviour of some of these methods has been investigated: Two methods (HOM: Della-Marta and Wanner, 2006 and SPLIDHOM: Mestre et al., submitted) which adjust the whole distribution of the climate element (especially minimum and maximum temperature) have been compared to the simpler Vincent's method (Vincent et al., 2002) which interpolates monthly adjustment factors onto daily data. The results indicate that the behaviour of the methods HOM and SPLIDHOM is very similar, although the complexity of these methods is different. They can improve the results compared to the Vincent's method when inhomogeneities in higher order moments occur. However, their applicability is limited since highly correlated neighbour series are required. More over, more data in the intervals before and after breaks is needed if the whole distribution shall be adjusted instead of the mean only. Due to these limitations a combination of distribution dependent adjustment methods and the Vincent method seems to be necessary for the homogenization of many time series. A dataset of Austrian daily maximum and minimum temperature data is used to illustrate the challenges of distribution dependent homogenization methods. Emphasis is placed on the estimation of the (sampling) uncertainty of these methods. Therefore a bootstrap approach is used. The accuracy of the calculated adjustments varies mainly between about 0.5°C for mean temperatures and more than one degree Celsius for the margins of the distribution. These uncertainty estimates can be valuable for extreme value studies.

  13. A novel thermotolerant Pediococcus acidilactici B-25 strain for color, COD, and BOD reduction of distillery effluent for end use applications.

    PubMed

    Tiwari, Soni; Rai, Priyanka; Yadav, Santosh Kumar; Gaur, Rajeeva

    2013-06-01

    The present study was aimed to characterize physico-chemical and microbial population of distillery effluent and isolate a novel thermotolerant bacterium for color, COD, and BOD reduction of spentwash. The level of alkalinity, TSS, DO, COD, BOD, TN, ammonical nitrogen, nitrate nitrogen, phosphorous, potassium, chloride, and calcium of spentwash (SW), bioreactor effluent (BE), and secondary treated effluent (STE) were well above the permissible limits. The level of color, TS, and TDS were under the permissible limits for STE but not for SW and BE. The microbial population was higher in BE. The results revealed that effluent was highly polluted and require suitable treatment before discharge. A novel thermotolerant bacterium, identified as Pediococcus acidilactici, was isolated which exhibited maximum 79 % decolorization, 85 % COD, and 94 % BOD reduction at 45 °C using 0.1 %, glucose; 0.1 %, peptone; 0.05 %, MgSO4; 0.05 %, K2HPO4; pH 6.0 within 24 h under static condition. The ability of this strain to decolorize melanoidin at minimum carbon and nitrogen supplementation warrants its possible application for effluent treatment at industrial level. In addition, it is first instance when melanoidin decolorization was reported by P. acidilactici. This study could be an approach towards control of environmental pollution and health hazards of people in and around the effluent distillery unit. PMID:23224419

  14. Polyurethane phantoms with homogeneous and nearly homogeneous optical properties

    NASA Astrophysics Data System (ADS)

    Keränen, Ville T.; Mäkynen, Anssi J.; Dayton, Amanda L.; Prahl, Scott A.

    2010-02-01

    Phantoms with controlled optical properties are often used for calibration and standardization. The phantoms are typically prepared by adding absorbers and scatterers to a clear host material. It is usually assumed that the scatterers and absorbers are uniformly dispersed within the medium. To explore the effects of this assumption, we prepared paired sets of polyurethane phantoms (both with identical masses of absorber, India ink and scatterer, titanium dioxide). Polyurethane phantoms were made by mixing two polyurethane parts (a and b) together and letting them cure in a polypropylene container. The mixture was degassed before curing to ensure a sample without bubbles. The optical properties were controlled by mixing titanium dioxide or India ink into polyurethane part (a or b) before blending the parts together. By changing the mixing sequence, we could change the aggregation of the scattering and absorbing particles. Each set had one sample with homogeneously dispersed scatterers and absorbers, and a second sample with slightly aggregated scatterers or absorbers. We found that the measured transmittance could easily vary by a factor of twenty. The estimated optical properties (using the inverse adding-doubling method) indicate that when aggregation is present, the optical properties are no longer proportional to the concentrations of absorbers or scatterers.

  15. Long term operation of continuous-flow system with enhanced biological phosphorus removal granules at different COD loading.

    PubMed

    Li, Dong; Lv, Yufeng; Zeng, Huiping; Zhang, Jie

    2016-09-01

    In this study, a continuous-flow system with enhanced biological phosphorus removal (EBPR) granules was operated at different COD concentrations (200, 300 and 400mgL(-)(1)) to investigate the effect of COD loading on this system. The results showed that when the COD concentration in influent was increased to 400mgL(-)(1), the anaerobic COD removal efficiency and total phosphorus removal efficiency reduced obviously and the settling ability of granules deteriorated due to the proliferation of filamentous bacteria. Moreover, high COD loading inhibited the EPS secretion and destroyed the stability of granules. Results of high-through pyrosequencing indicated that filamentous bacteria had a competitive advantage over polyphosphate-accumulating organisms (PAOs) at high COD loading. The performance of system, settling ability of granules and proportion of PAOs gradually recovered to the initial level after the COD concentration was reduced to 200mgL(-)(1) on day 81. PMID:27295254

  16. Kinetics of electro-oxidation of ammonia-N, nitrites and COD from a recirculating aquaculture saline water system using BDD anodes.

    PubMed

    Díaz, V; Ibáñez, R; Gómez, P; Urtiaga, A M; Ortiz, I

    2011-01-01

    The viability of the electro-oxidation technology provided with boron doped diamond (BDD) electrodes for the treatment and reuse of the seawater used in a Recirculating Aquaculture System (RAS) was evaluated in this work. The influence of the applied current density (5-50 A m(-2)) in the removal of Total Ammonia Nitrogen (TAN), nitrite and chemical oxygen demand (COD) was analyzed observing that complete TAN removal together with important reductions of the other considered contaminants could be achieved, thus meeting the requirements for reuse of seawater in RAS systems. TAN removal, mainly due to an indirect oxidation mechanism was described by a second order kinetics while COD and nitrite removal followed zero-th order kinetics. The values of the kinetic constants for the anodic oxidation of each compound were obtained as a function of the applied current density (k(TAN) = 7.86 × 10(-5) · exp(6.30 × 10(-2) J); kNO2 = 3.43 × 10(-2) J; k(COD) = 1.35 × 10(-2) J). The formation of free chlorine and oxidation by-products, i.e., trihalomethanes (THMs) was followed along the electro-oxidation process. Although a maximum concentration of 1.7 mg l(-1) of total trihalomethanes was detected an integrated process combining electrochemical oxidation in order to eliminate TAN, nitrite and COD and adsorption onto activated carbon to remove the residual chlorine and THMs is proposed, as an efficient alternative to treat and reuse the seawater in fish culture systems. Finally, the energy consumption of the treatment has been evaluated. PMID:20832837

  17. Changes in physiological responses of an Antarctic fish, the emerald rock cod (Trematomus bernacchii), following exposure to polybrominated diphenyl ethers (PBDEs).

    PubMed

    Ghosh, Ruma; Lokman, P Mark; Lamare, Miles D; Metcalf, Victoria J; Burritt, David J; Davison, William; Hageman, Kimberly J

    2013-03-15

    Although polybrominated diphenyl ethers (PBDEs) have the ability to undergo long-range atmospheric transport to remote ecosystems like Antarctica, a recent study found evidence for a local source within the Antarctic. PBDEs from sewage treatment outfalls of McMurdo Station and Scott Base on Ross Island have been attributed to the high concentrations measured in emerald rock cod (Trematomus bernacchii). The potential impact of PBDEs on Antarctic fish physiology is unknown and therefore, the aim of this study was to obtain a greater understanding of physiological responses of emerald rock cod for assessing changes in ecosystem quality. A PBDE mixture (ΣPBDE 8 congeners) was administered fortnightly over 42 days and physiological changes were observed throughout this period and for a further 14 days thereafter. Changes in liver composition, molecular level changes and enzyme activities of selected detoxification-mediated and antioxidant defence markers were measured. Changes in total lipid, lipid peroxide and protein carbonyl concentrations in emerald rock cod liver were consistent with increases in nucleus surface area in the PBDE-treated groups, suggesting alterations in cellular function. Changes in the activities of selected antioxidant enzymes indirectly indicated oxidative stress, possibly resulting in the changes in liver composition. Additionally, glutathione-S-transferase (GST) activity reached its peak faster than that of ethoxyresorufin-O-deethylase (EROD), suggesting that during the early response to PBDE exposures there could be a greater involvement of GST-mediated detoxification. Thus, for at least the species examined here, protein carbonyl and lipid peroxides were useful and informative biomarkers for cellular level responses following PBDE-related exposure. Furthermore, our findings suggest that emerald rock cod exposed to PBDEs develop oxidative stress - a condition with potential consequences for fish growth, health and reproduction. PMID:23274353

  18. Effect of influent COD/SO4(2-) ratios on UASB treatment of a synthetic sulfate-containing wastewater.

    PubMed

    Hu, Yong; Jing, Zhaoqian; Sudo, Yuta; Niu, Qigui; Du, Jingru; Wu, Jiang; Li, Yu-You

    2015-07-01

    The effect of the chemical oxygen demand/sulfate (COD/SO4(2-)) ratio on the anaerobic treatment of synthetic chemical wastewater containing acetate, ethanol, and sulfate, was investigated using a UASB reactor. The experimental results show that at a COD/SO4(2-) ratio of 20 and a COD loading rate of 25.2gCODL(-1)d(-1), a COD removal of as high as 87.8% was maintained. At a COD/SO4(2-) ratio of 0.5 (sulfate concentration 6000mgL(-1)), however, the COD removal was 79.2% and the methane yield was 0.20LCH4gCOD(-1). The conversion of influent COD to methane dropped from 80.5% to 54.4% as the COD/SO4(2-) ratio decreased from 20 to 0.5. At all the COD/SO4(2-) ratios applied, over 79.4% of the total electron flow was utilized by methane-producing archaea (MPA), indicating that methane fermentation was the predominant reaction. The majority of the methane was produced by acetoclastic MPA at high COD/SO4(2-) ratios and both acetoclastic and hydrogenthrophic MPA at low COD/SO4(2-) ratios. Only at low COD/SO4(2-) ratios were SRB species such as Desulfovibrio found to play a key role in ethanol degradation, whereas all the SRB species were found to be incomplete oxidizers at both high and low COD/SO4(2-) ratios. PMID:25747303

  19. 6. Photocopy of woodengraving in Rich, TruroCape Cod facing p. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    6. Photocopy of wood-engraving in Rich, Truro-Cape Cod facing p. 464. Copy owned by Miss Marion Rich, Truro, Mass. SUMMER HOME OF THE AUTHOR, AT LONGNOOK - Shebnah Rich House, Longnook Road, Truro, Barnstable County, MA

  20. 76 FR 15888 - Special Regulations; Areas of the National Park System, Cape Cod National Seashore

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-03-22

    ... was promulgated through a proposed and final rule (48 FR 56971, December 27, 1983; and 49 FR 18442... station, dune shacks, modern and Cape Cod-style houses, cultural landscapes, and wild cranberry...

  1. Nearsightedness of Finite Homogeneous Model Systems

    NASA Astrophysics Data System (ADS)

    Mitsuta, Yuki; Yamanaka, Shusuke; Kawakami, Takashi; Okumura, Mitsutaka; Yamaguchi, Kizashi; Nakamura, Haruki

    On the basis of linear response function (LRF) analysis, nearsightedness of finite systems is examined for nearly homogeneous molecular systems. We first treated with Hn (n = 2-100) to inspect the local or nonlocal responses of these systems, which are, in other words, the magnitudes of nearsightedness of the finite systems. Further, the LRFs of H100n+ (n = 0-98) have been examined in order to clarify whether the magnitude of nearsightedness depends either the size of systems or the number of electrons in systems. From our calculations, we conjectured that the number of electrons are essential for nearsightedness of electronic matter (NEM) of this type of systems. This conjecture has been confirmed from the fact that the LRFs of H100n+ (n = 0-98) are similar to those of N electrons (N = 2-100) in a square well potential, showing that attractive potentials of H100n+ (n = 0-98) do not change significantly the dependence of the magnitudes of NEM on the number of electrons.

  2. Interactions between small pelagic fish and young cod across the north Atlantic.

    PubMed

    Minto, Cóilín; Worm, Boris

    2012-10-01

    Species interactions that play out over large spatial scales are difficult to observe, particularly in the oceans. The current lack of empirical evidence for biologically meaningful interaction parameters likely delays the application of holistic management procedures. Here we estimate interactions during the early life history of fish across regions. We present separate and hierarchical Bayesian models that estimate the direction and strength of interactions between Atlantic cod and dominant pelagic fishes across much of their range in the North Atlantic. We test the hypothesis that small pelagic fish may reduce survival of cod at early life stages, and thereby contribute to the delayed recovery of depleted cod populations. Significant regional variation exists between cod recruitment and Atlantic herring abundance with eight of 14 regions displaying a negative relationship, four regions displaying no relationship, and a positive relationship observed in two regions. In contrast, most regions where Atlantic mackerel co-occurs showed no relationship with cod recruitment, with the possible exception of Gulf of St. Lawrence and Celtic Sea regions. Regions with sprat or capelin as dominant pelagics also displayed weak or no relationship, although the probability of a negative interaction with sprat increased when time series autocorrelation was accounted for. Overall, the interaction between herring and young cod was found to be negative with 94% probability, while the probability of negative interactions with mackerel was only 68%. Our findings suggest that the strength of predation or competition effects on young cod varies among small pelagic species but appears consistently for Atlantic herring; this effect may need to be considered in recovery trajectories for depleted cod populations. The methods introduced here are applicable in the investigation of species interactions from time series data collected across different study systems. PMID:23185876

  3. Dissecting Complex Metabolic Integration Provides Direct Genetic Evidence for CodY Activation by Guanine Nucleotides▿

    PubMed Central

    Brinsmade, Shaun R.; Sonenshein, Abraham L.

    2011-01-01

    The global regulator CodY controls the expression of dozens of metabolic genes and genes mediating adaptation to nutrient availability in many low-G+C Gram-positive bacteria. Branched-chain amino acids l-isoleucine, l-leucine, and l-valine (ILV) activate CodY both in vivo and in vitro, and genes that direct their synthesis (ilv, ybgE, and ywaA) are highly repressed by CodY, creating a potential negative feedback loop. The nucleoside triphosphate GTP also activates CodY in vitro, but the evidence for activation by GTP in vivo is limited and indirect. We constructed a Bacillus subtilis strain (ybgE bcd ywaA) that is unable to convert branched-chain α-keto acids to ILV or to use ILV as a precursor for branched-chain fatty acid synthesis. Unexpectedly, the strain was not viable on rich medium. Supplementing rich medium with short, branched-chain fatty acids or derepressing expression of genes for de novo ILV synthesis bypassed the original lethality, restoring growth and showing that the lack of viability was due to insufficient intracellular production of the precursors of branched-chain fatty acids. Spontaneous extragenic suppressor mutants that arose in the triple mutant population proved to have additional mutations in guaA or guaB or codY. Expression of ILV biosynthetic genes in codY mutants was increased. The gua mutations caused guanine/guanosine auxotrophy and led to partial derepression of direct CodY-repressed targets, including ILV biosynthetic genes, under conditions similar to those that caused the original lethality. We conclude that a guanine derivative, most likely GTP, controls CodY activity in vivo. PMID:21856856

  4. Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection

    PubMed Central

    Moen, Thomas; Hayes, Ben; Nilsen, Frank; Delghandi, Madjid; Fjalestad, Kjersti T; Fevolden, Svein-Erik; Berg, Paul R; Lien, Sigbjørn

    2008-01-01

    Background The Atlantic cod (Gadus morhua) is a groundfish of great economic value in fisheries and an emerging species in aquaculture. Genetic markers are needed to identify wild stocks in order to ensure sustainable management, and for marker-assisted selection and pedigree determination in aquaculture. Here, we report on the development and evaluation of a large number of Single Nucleotide Polymorphism (SNP) markers from the alignment of Expressed Sequence Tag (EST) sequences in Atlantic cod. We also present basic population parameters of the SNPs in samples of North-East Arctic cod and Norwegian coastal cod obtained from three different localities, and test for SNPs that may have been targeted by natural selection. Results A total of 17,056 EST sequences were used to find 724 putative SNPs, from which 318 segregating SNPs were isolated. The SNPs were tested on Atlantic cod from four different sites, comprising both North-East Arctic cod (NEAC) and Norwegian coastal cod (NCC). The average heterozygosity of the SNPs was 0.25 and the average minor allele frequency was 0.18. FST values were highly variable, with the majority of SNPs displaying very little differentiation while others had FST values as high as 0.83. The FST values of 29 SNPs were found to be larger than expected under a strictly neutral model, suggesting that these loci are, or have been, influenced by natural selection. For the majority of these outlier SNPs, allele frequencies in a northern sample of NCC were intermediate between allele frequencies in a southern sample of NCC and a sample of NEAC, indicating a cline in allele frequencies similar to that found at the Pantophysin I locus. Conclusion The SNP markers presented here are powerful tools for future genetics work related to management and aquaculture. In particular, some SNPs exhibiting high levels of population divergence have potential to significantly enhance studies on the population structure of Atlantic cod. PMID:18302786

  5. Evaluation of COD effect on anammox process and microbial communities in the anaerobic baffled reactor (ABR).

    PubMed

    Chen, Chongjun; Sun, Faqian; Zhang, Haiqing; Wang, Jianfang; Shen, Yaoliang; Liang, Xinqiang

    2016-09-01

    Nitrogen removal with different organic carbon effect was investigated using anaerobic baffled reactor (ABR) anammox reactor. Results indicated that organic carbon exert an important effect on nitrogen removal through anammox process. When the feeding COD concentration was lower than 99.7mgL(-1), nitrogen removal could be enhanced via the coexistence of denitrification and anammox. Elevated COD could further deteriorate the anammox activity with almost complete inhibition at the COD concentration of 284.1mgL(-1). The nitrogen removal contribution rate of anammox was varied from 92.7% to 6.9%. However, the anammox activity was recovered when the COD/TN was decreased from 2.33 to 1.25 with influent nitrite addition. And, the anammox process was again intensified from 27.0 to 51.2%. High-throughput Miseq sequencing analyses revealed that the predominant phylum changed from Chloroflexi to Proteobacteria with the elevated COD addition, which indicated COD concentration was the most important factor regulating the bacterial community structure. PMID:27285572

  6. Regime shift signatures from stable oxygen isotopic records of otoliths of Atlantic cod (Gadus morhua).

    PubMed

    Gao, Y W

    2002-12-01

    The sudden collapse of Atlantic cod (Gadus morhua) may relate to ocean climate, or regime shifts as demonstrated in production of Pacific salmon. This paper reports the results of stable oxygen isotope ratio analyses (18O/16O or delta18OA) from 91 otoliths of cod over a period of about 20 years. Seasonal delta18OA variations of individual otoliths started at an initial value of about -0.5 to 0 per thousand VPDB, and then reached a stable level in the range of +2.5 to +3.5 per thousand VPDB after 4-5 years. The initial low values correspond to the natal sources of mature cod, while the higher delta18OA values represent the water conditions before the cod was caught. This pattern of delta18OA variation was observed over the life history of all cod examined. Furthermore, the calculated isotopic temperatures agreed with those obtained from summer bottom trawl survey, indicating that delta18OA of otoliths could be used as a thermometer in determining the ambient seawater temperature where the cod lived. Comparison of long-term delta18OA records and biological and meteorological observations suggested that decadal-scale ecosystem changes did occur in the late 1970s and early 1990s in Atlantic Canada, comparable to regime shifts occurred in the North Pacific. PMID:12725428

  7. Impact of influent COD/N ratio on disintegration of aerobic granular sludge.

    PubMed

    Luo, Jinghai; Hao, Tianwei; Wei, Li; Mackey, Hamish R; Lin, Ziqiao; Chen, Guang-Hao

    2014-10-01

    Disintegration of aerobic granular sludge (AGS) is a challenging issue in the long-term operation of an AGS system. Chemical oxygen demand (COD)-to-nitrogen (N) ratio (COD/N), often variable in industrial wastewaters, could be a destabilizing factor causing granule disintegration. This study investigates the impact of this ratio on AGS disintegration and identifies the key causes, through close monitoring of AGS changes in its physical and chemical characteristics, microbial community and treatment performance. For specific comparison, two lab-scale air-lift type sequencing batch reactors, one for aerobic granular and the other for flocculent sludge, were operated in parallel with three COD/N ratios (4, 2, 1) applied in the influent of each reactor. The decreased COD/N ratios of 2 and 1 strongly influenced the stability of AGS with regard to physical properties and nitrification efficiency, leading to AGS disintegration when the ratio was decreased to 1. Comparatively the flocculent sludge maintained relatively stable structure and nitrification efficiency under all tested COD/N ratios. The lowest COD/N ratio resulted in a large microbial community shift and extracellular polymeric substances (EPS) reduction in both flocculent and granular sludges. The disintegration of AGS was associated with two possible causes: 1) reduction in net tyrosine production in the EPS and 2) a major microbial community shift including reduction in filamentous bacteria leading to the collapse of granule structure. PMID:24950459

  8. The importance of the cost of swimming to the foraging behavior and ecology of larval cod ( Gadus morhua) on Georges Bank

    NASA Astrophysics Data System (ADS)

    Ruzicka, James J.; Gallager, Scott M.

    2006-11-01

    Energy expenditure by larval cod, Gadus morhua, during foraging was quantified based upon laboratory observations of search behavior and measurements of the cost of swimming. A large-volume (250-L) observation system employing stereo-paired video cameras was developed to record foraging behavior in three dimensions, and a respirometry system was developed to measure the cost of swimming of individual larvae. Application of the derived cost of swimming model to activity levels observed within the large observation tank showed that activity was a substantial and variable component of a larval cod's total bioenergetic budget. The estimated routine metabolic rate of the freely swimming larvae was 3.8-5 times greater than the measured basal rate depending upon their activity level. This is greater than the range of routine factorial scopes previously reported for larval fish in general. Future trophodynamic models developed for small marine fish larvae should consider these greater scaling factors when estimating the active metabolic rate of larvae foraging in the ocean. A trophodynamic model for larval cod on Georges Bank was developed incorporating observed foraging behavior, measured swimming costs, and the theoretical effect of turbulence on predator-prey contact rates. This model was used to estimate the prey density required to meet the estimated minimum daily metabolic demand. The estimated nauplius and copepodite concentrations required for the survival of small larvae were within the range of mean homogeneous springtime concentrations observed on Georges Bank. However, for the smallest post-yolk-sac larvae (5 mm), favorable low-turbulence foraging conditions, encountering patches of high prey density, or exploitation of alternative prey sources such as protozoans may be necessary.

  9. Multidimensionality of behavioural phenotypes in Atlantic cod, Gadus morhua.

    PubMed

    Meager, Justin J; Fernö, Anders; Skjæraasen, Jon Egil; Järvi, Torbjörn; Rodewald, Petra; Sverdrup, Gisle; Winberg, Svante; Mayer, Ian

    2012-06-25

    Much of the inter-individual variation observed in animal behaviour is now attributed to the existence of behavioural phenotypes or animal personalities. Such phenotypes may be fundamental to fisheries and aquaculture, yet there have been few detailed studies of this phenomenon in exploited marine animals. We investigated the behavioural and neuroendocrine responses of Atlantic cod (Gadus morhua L.), to situations reflecting critical ecological challenges: predator attacks and territorial challenges. Both hatchery-reared and wild fish were tested and behavioural profiles were compared with baseline conditions. We then used an objective, multivariate approach, rather than assigning individuals along one-dimensional behavioural axes, to examine whether distinct behavioural phenotypes were present. Our results indicate that two distinct behavioural phenotypes were evident in fish from each background. In hatchery-reared fish, phenotypes displayed divergent locomotor activity, sheltering, brain monoamine concentrations and responses to competitive challenges. In wild fish, phenotypes were distinguished primarily by locomotor activity, sheltering and responsiveness to predator stimuli. Hatcheries presumably represent a more stressful social environment, and social behaviour and neuroendocrine responses were important in discerning behavioural phenotypes in hatchery fish, whereas antipredator responses were important in discerning phenotypes in wild fish that have previously encountered predators. In both fish types, behavioural and physiological traits that classified individuals into phenotypes were not the same as those that were correlated across situations. These results highlight the multidimensionality of animal personalities, and that the processes that regulate one suite of behavioural traits may be very different to the processes that regulate other behaviours. PMID:22465310

  10. Multiple ice-age refugia in Pacific cod, Gadus macrocephalus.

    PubMed

    Canino, Michael F; Spies, Ingrid B; Cunningham, Kathryn M; Hauser, Lorenz; Grant, W Stewart

    2010-10-01

    Pleistocene ice-ages greatly influenced the historical abundances of Pacific cod, Gadus macrocephalus, in the North Pacific and its marginal seas. We surveyed genetic variation at 11 microsatellite loci and mitochondrial (mt) DNA in samples from twelve locations from the Sea of Japan to Washington State. Both microsatellite (mean H = 0.868) and mtDNA haplotype (mean h = 0.958) diversities were large and did not show any geographical trends. Genetic differentiation between samples was significantly correlated with geographical distance between samples for both microsatellites (FST = 0.028, r(2) = 0.33) and mtDNA (FST = 0.027, r(2) = 0.18). Both marker classes showed a strong genetic discontinuity between northwestern and northeastern Pacific populations that likely represents groups previously isolated during glaciations that are now in secondary contact. Significant differences appeared between samples from the Sea of Japan and Okhotsk Sea that may reflect ice-age isolations in the northwest Pacific. In the northeast Pacific, a microsatellite and mtDNA partition was detected between coastal and Georgia Basin populations. The presence of two major coastal mtDNA lineages on either side of the Pacific Ocean basin implies at least two ice-age refugia and separate postglacial population expansions facilitated by different glacial histories. Northward expansions into the Gulf of Alaska were possible 14-15 kyr ago, but deglaciation and colonization of the Georgia Basin probably occurred somewhat later. Population expansions were evident in mtDNA mismatch distributions and in Bayesian skyline plots of the three major lineages, but the start of expansions appeared to pre-date the last glacial maximum. PMID:20819160

  11. [Anaerobic membrane bioreactors for treating agricultural and food processing wastewater at high strength].

    PubMed

    Wei, Yuan-Song; Yu, Da-Wei; Cao, Lei

    2014-04-01

    As the second largest amounts of COD discharged in 41 kinds of industrial wastewater, it is of great urgency for the agricultural and food processing industry to control water pollution and reduce pollutants. Generally the agricultural and food processing industrial wastewater with high strength COD of 8 000-30 000 mg x L(-1), is mainly treated with anaerobic and aerobic processes in series, but which exists some issues of long process, difficult maintenance and high operational costs. Through coupling anaerobic digestion and membrane separation together, anaerobic membrane bioreactor (AnMBR) has typical advantages of high COD removal efficiency (92%-99%), high COD organic loading rate [2.3-19.8 kg x (m3 x d)(-1)], little sludge discharged (SRT > 40 d) and low cost (HRT of 8-12 h). According to COD composition of high strength industrial wastewater, rate-limiting step of methanation could be either hydrolysis and acidification or methanogenesis. Compared with aerobic membrane bioreactor (MBR), membrane fouling of AnMBR is more complicated in characterization and more difficult in control. Measures for membrane fouling control of AnMBR are almost the same as those of MBR, including cross flow, air sparging and membrane relaxation. For meeting discharging standard of food processing wastewater with high strength, AnMBR is a promising technology with very short process, by enhancing COD removal efficiency, controlling membrane fouling and improving energy recovery. PMID:24946624

  12. Performance of anaerobic fluidized membrane bioreactors using effluents of microbial fuel cells treating domestic wastewater.

    PubMed

    Kim, Kyoung-Yeol; Yang, Wulin; Ye, Yaoli; LaBarge, Nicole; Logan, Bruce E

    2016-05-01

    Anaerobic fluidized membrane bioreactors (AFMBRs) have been mainly developed as a post-treatment process to produce high quality effluent with very low energy consumption. The performance of an AFMBR was examined using the effluent from a microbial fuel cell (MFC) treating domestic wastewater, as a function of AFMBR hydraulic retention times (HRTs) and organic matter loading rates. The MFC-AFMBR achieved 89±3% removal of the chemical oxygen demand (COD), with an effluent of 36±6mg-COD/L over 112days operation. The AFMBR had very stable operation, with no significant changes in COD removal efficiencies, for HRTs ranging from 1.2 to 3.8h, although the effluent COD concentration increased with organic loading. Transmembrane pressure (TMP) was low, and could be maintained below 0.12bar through solids removal. This study proved that the AFMBR could be operated with a short HRT but a low COD loading rate was required to achieve low effluent COD. PMID:26921870

  13. AQUEOUS HOMOGENEOUS REACTORTECHNICAL PANEL REPORT

    SciTech Connect

    Diamond, D.J.; Bajorek, S.; Bakel, A.; Flanagan, G.; Mubayi, V.; Skarda, R.; Staudenmeier, J.; Taiwo, T.; Tonoike, K.; Tripp, C.; Wei, T.; Yarsky, P.

    2010-12-03

    Considerable interest has been expressed for developing a stable U.S. production capacity for medical isotopes and particularly for molybdenum- 99 (99Mo). This is motivated by recent re-ductions in production and supply worldwide. Consistent with U.S. nonproliferation objectives, any new production capability should not use highly enriched uranium fuel or targets. Conse-quently, Aqueous Homogeneous Reactors (AHRs) are under consideration for potential 99Mo production using low-enriched uranium. Although the Nuclear Regulatory Commission (NRC) has guidance to facilitate the licensing process for non-power reactors, that guidance is focused on reactors with fixed, solid fuel and hence, not applicable to an AHR. A panel was convened to study the technical issues associated with normal operation and potential transients and accidents of an AHR that might be designed for isotope production. The panel has produced the requisite AHR licensing guidance for three chapters that exist now for non-power reactor licensing: Reac-tor Description, Reactor Coolant Systems, and Accident Analysis. The guidance is in two parts for each chapter: 1) standard format and content a licensee would use and 2) the standard review plan the NRC staff would use. This guidance takes into account the unique features of an AHR such as the fuel being in solution; the fission product barriers being the vessel and attached systems; the production and release of radiolytic and fission product gases and their impact on operations and their control by a gas management system; and the movement of fuel into and out of the reactor vessel.

  14. STEAM STIRRED HOMOGENEOUS NUCLEAR REACTOR

    DOEpatents

    Busey, H.M.

    1958-06-01

    A homogeneous nuclear reactor utilizing a selfcirculating liquid fuel is described. The reactor vessel is in the form of a vertically disposed tubular member having the lower end closed by the tube walls and the upper end closed by a removal fianged assembly. A spherical reaction shell is located in the lower end of the vessel and spaced from the inside walls. The reaction shell is perforated on its lower surface and is provided with a bundle of small-diameter tubes extending vertically upward from its top central portion. The reactor vessel is surrounded in the region of the reaction shell by a neutron reflector. The liquid fuel, which may be a solution of enriched uranyl sulfate in ordinary or heavy water, is mainiained at a level within the reactor vessel of approximately the top of the tubes. The heat of the reaction which is created in the critical region within the spherical reaction shell forms steam bubbles which more upwardly through the tubes. The upward movement of these bubbles results in the forcing of the liquid fuel out of the top of these tubes, from where the fuel passes downwardly in the space between the tubes and the vessel wall where it is cooled by heat exchangers. The fuel then re-enters the critical region in the reaction shell through the perforations in the bottom. The upper portion of the reactor vessel is provided with baffles to prevent the liquid fuel from splashing into this region which is also provided with a recombiner apparatus for recombining the radiolytically dissociated moderator vapor and a control means.

  15. Turbulence in homogeneous shear flows

    NASA Astrophysics Data System (ADS)

    Pumir, Alain

    1996-11-01

    Homogeneous shear flows with an imposed mean velocity U=Syx̂ are studied in a period box of size Lx×Ly×Lz, in the statistically stationary turbulent state. In contrast with unbounded shear flows, the finite size of the system constrains the large-scale dynamics. The Reynolds number, defined by Re≡SL2y/ν varies in the range 2600⩽Re⩽11300. The total kinetic energy and enstrophy in the volume of numerical integration have large peaks, resulting in fluctuations of kinetic energy of order 30%-50%. The mechanism leading to these fluctuations is very reminiscent of the ``streaks'' responsible for the violent bursts observed in turbulent boundary layers. The large scale anisotropy of the flow, characterized by the two-point correlation tensor depends on the aspect ratio of the system. The probability distribution functions (PDF) of the components of the velocity are found to be close to Gaussian. The physics of the Reynolds stress tensor, uv, is very similar to what is found experimentally in wall bounded shear flows. The study of the two-point correlation tensor of the vorticity <ωiωj> suggests that the small scales become isotropic when the Reynolds number increases, as observed in high Reynolds number turbulent boundary layers. However, the skewness of the z component of vorticity is independent of the Reynolds number in this range, suggesting that some small scale anisotropy remains even at very high Reynolds numbers. An analogy is drawn with the problem of turbulent mixing, where a similar anisotropy is observed.

  16. Homogeneous catalysts in hypersonic combustion

    SciTech Connect

    Harradine, D.M.; Lyman, J.L.; Oldenborg, R.C.; Pack, R.T.; Schott, G.L.

    1989-01-01

    Density and residence time both become unfavorably small for efficient combustion of hydrogen fuel in ramjet propulsion in air at high altitude and hypersonic speed. Raising the density and increasing the transit time of the air through the engine necessitates stronger contraction of the air flow area. This enhances the kinetic and thermodynamic tendency of H/sub 2/O to form completely, accompanied only by N/sub 2/ and any excess H/sub 2/(or O/sub 2/). The by-products to be avoided are the energetically expensive fragment species H and/or O atoms and OH radicals, and residual (2H/sub 2/ plus O/sub 2/). However, excessive area contraction raises air temperature and consequent combustion-product temperature by adiabatic compression. This counteracts and ultimately overwhelms the thermodynamic benefit by which higher density favors the triatomic product, H/sub 2/O, over its monatomic and diatomic alternatives. For static pressures in the neighborhood of 1 atm, static temperature must be kept or brought below ca. 2400 K for acceptable stability of H/sub 2/O. Another measure, whose requisite chemistry we address here, is to extract propulsive work from the combustion products early in the expansion. The objective is to lower the static temperature of the combustion stream enough for H/sub 2/O to become adequately stable before the exhaust flow is massively expanded and its composition ''frozen.'' We proceed to address this mechanism and its kinetics, and then examine prospects for enhancing its rate by homogeneous catalysts. 9 refs.

  17. The Global Regulator CodY in Streptococcus thermophilus Controls the Metabolic Network for Escalating Growth in the Milk Environment

    PubMed Central

    Lu, W. W.; Wang, Y.; Wang, T.

    2015-01-01

    CodY is a transcriptional regulator conserved in the low-GC group of Gram-positive bacteria. In this work, we demonstrated the presence in Streptococcus thermophilus ST2017 of a functional member of the CodY family of global regulatory proteins, S. thermophilus CodY (CodYSt). The CodYSt regulon was identified by transcriptome analysis; it consisted predominantly of genes involved in amino acid metabolism but also included genes involved in several other cellular processes, including carbon metabolism, nutrient transport, and stress response. It was revealed that CodYSt repressed the transformation of the central metabolic pathway to amino acid metabolism and improved lactose utilization. Furthermore, the glutamate dehydrogenase gene (gdhA), repressed by CodYSt, was suggested to coordinate the interconversion between carbon metabolism and amino acid metabolism and to play an important role on the optimal growth of S. thermophilus ST2017 in milk. A conserved CodYSt box [AA(T/A)(A/T)TTCTGA(A/C)AATT] was indeed required for in vitro binding of CodYSt to the target regions of DNA. These results provided evidence for the function of CodYSt, by which this strain coordinately regulates its various metabolic pathways so as to adapt to the milk environment. PMID:25616791

  18. The global regulator CodY in Streptococcus thermophilus controls the metabolic network for escalating growth in the milk environment.

    PubMed

    Lu, W W; Wang, Y; Wang, T; Kong, J

    2015-04-01

    CodY is a transcriptional regulator conserved in the low-GC group of Gram-positive bacteria. In this work, we demonstrated the presence in Streptococcus thermophilus ST2017 of a functional member of the CodY family of global regulatory proteins, S. thermophilus CodY (CodYSt). The CodYSt regulon was identified by transcriptome analysis; it consisted predominantly of genes involved in amino acid metabolism but also included genes involved in several other cellular processes, including carbon metabolism, nutrient transport, and stress response. It was revealed that CodYSt repressed the transformation of the central metabolic pathway to amino acid metabolism and improved lactose utilization. Furthermore, the glutamate dehydrogenase gene (gdhA), repressed by CodYSt, was suggested to coordinate the interconversion between carbon metabolism and amino acid metabolism and to play an important role on the optimal growth of S. thermophilus ST2017 in milk. A conserved CodYSt box [AA(T/A)(A/T)TTCTGA(A/C)AATT] was indeed required for in vitro binding of CodYSt to the target regions of DNA. These results provided evidence for the function of CodYSt, by which this strain coordinately regulates its various metabolic pathways so as to adapt to the milk environment. PMID:25616791

  19. Estimation of the maximum allowable loading amount of COD in Luoyuan Bay by a 3-D COD transport and transformation model

    NASA Astrophysics Data System (ADS)

    Wu, Jialin; Li, Keqiang; Shi, Xiaoyong; Liang, Shengkang; Han, Xiurong; Ma, Qimin; Wang, Xiulin

    2014-08-01

    The rapid economic and social developments in the Luoyuan and Lianjiang counties of Fujian Province, China, raise certain environment and ecosystem issues. The unusual phytoplankton bloom and eutrophication, for example, have increased in severity in Luoyuan Bay (LB). The constant increase of nutrient loads has largely caused the environmental degradation in LB. Several countermeasures have been implemented to solve these environmental problems. The most effective of these strategies is the reduction of pollutant loadings into the sea in accordance with total pollutant load control (TPLC) plans. A combined three-dimensional hydrodynamic transport-transformation model was constructed to estimate the marine environmental capacity of chemical oxygen demand (COD). The allowed maximum loadings for each discharge unit in LB were calculated with applicable simulation results. The simulation results indicated that the environmental capacity of COD is approximately 11×104 t year-1 when the water quality complies with the marine functional zoning standards for LB. A pollutant reduction scheme to diminish the present levels of mariculture- and domestic-based COD loadings is based on the estimated marine COD environmental capacity. The obtained values imply that the LB waters could comply with the targeted water quality criteria. To meet the revised marine functional zoning standards, discharge loadings from discharge units 1 and 11 should be reduced to 996 and 3236 t year-1, respectively.

  20. Condition, prolonged swimming performance and muscle metabolic capacities of cod Gadus morhua.

    PubMed

    Martínez, M; Guderley, H; Dutil, J-D; Winger, P D; He, P; Walsh, S J

    2003-02-01

    This study evaluated the link between swimming endurance and condition of Atlantic cod Gadus morhua that had been fed or starved during the 16 weeks preceding the tests, and assessed whether muscle metabolic capacities explain such links. The condition factor [(somatic mass x fork length(-3))x100] of starved cod was 0.54+/-0.1 whereas that of fed cod was 0.81+/-0.1. In white and red muscle, we measured four glycolytic enzymes: phosphofructokinase (PFK), pyruvate kinase (PK), creatine kinase (CK) and lactate dehydrogenase (LDH), two mitochondrial enzymes: cytochrome c oxidase (CCO) and citrate synthase (CS), a biosynthetic enzyme, nucleoside diphosphate kinase (NDPK), glycogen and protein levels and water content. Muscle samples were taken at three positions along the length of the fish; starvation affected the metabolic capacities of white muscle more than those of red muscle. The levels of glycolytic enzymes and glycogen changed more in white than red muscle during starvation. Both in fed and starved cod, muscle metabolic capacities varied with position along the fish; starvation reduced this longitudinal variation more in white than red muscle. In white muscle of fed cod, the glycolytic enzyme levels increased from head to tail, while in starved cod this longitudinal variation disappeared. In red muscle mitochondrial enzyme levels were highest in the caudal sample, but fewer differences were found for glycolytic enzymes. Swimming endurance was markedly affected by fish condition, with starved fish swimming only 30% of the time (and distance) of fed fish. This endurance was closely linked with the number of burst-coast movements during the test and the activity of CCO and LDH in white muscle. The number of burst-coast movements was significantly linked with condition factor and PFK activity in caudal red muscle and gill arch mass. Our data indicated that cod use both glycolytic and oxidative capacities to support endurance swimming. Furthermore, swimming endurance

  1. Electrochemical oxidation of recalcitrant organic compounds in biologically treated municipal solid waste leachate in a flow reactor.

    PubMed

    Quan, Xuejun; Cheng, Zhiliang; Chen, Bo; Zhu, Xincai

    2013-10-01

    Biologically-treated municipal solid waste (MSW) leachate still contains many kinds of bio-recalcitrant organic matter. A new plate and frame electrochemical reactor was designed to treat these materials under flow conditions. In the electrochemical oxidation process, NH3 and color could be easily removed by means of electro-generated chlorine/hypochlorite within 20 min. The effects of major process parameters on the removal of organic pollutants were investigated systematically. Under experimental conditions, the optimum operation parameters were current density of 65 mA/cm2, flow velocity of 2.6 cm/sec in electrode gap, and initial chloride ion concentration of 5000 mg/L. The COD in the leachate could be reduced below 100 mg/L after 1 hr of treatment. The kinetics and mechanism of COD removal were investigated by simultaneously monitoring the COD change and chlorine/hypochlorite production. The kinetics of COD removal exhibited a two-stage kinetic model, and the decrease of electro-generated chlorine/hypochlorite production was the major mechanism for the slowing down of the COD removal rate in the second stage. The narrowing of the electrode gap is beneficial for COD removal and energy consumption. PMID:24494488

  2. Mercury Cycling in Salt Marsh Pond Ecosystems: Cape Cod, MA

    NASA Astrophysics Data System (ADS)

    Ganguli, P. M.; Gonneea, M. E.; Lamborg, C. H.; Kroeger, K. D.; Swarr, G.; Vadman, K. J.; Baldwin, S.; Brooks, T. W.; Green, A.

    2014-12-01

    We are measuring total mercury (HgT) and monomethylmercury (CH3Hg+ or MMHg) in pore water, surface water, and sediment cores from two salt marsh pond systems on the south shore of Cape Cod, MA to characterize the distribution of mercury species and to identify features that influence mercury speciation and transport. Sage Lot Pond is relatively undisturbed and has low nitrogen loading (12 kg ha-1 y-1). It is part of the Waquoit Bay National Estuarine Reserve and is surrounded by undeveloped wooded uplands. In contrast, Great Pond is highly impacted. Nitrogen loading to the site is elevated (600 kg ha-1 y-1) and the marsh is adjacent to a large residential area. In both systems, a 1 to 2 m organic-rich peat layer overlies the permeable sand aquifer. Groundwater in this region is typically oxic, where pore water within salt marsh peat is suboxic to anoxic. We hypothesize that redox gradients at the transition from the root zone to peat and at the peat-sand interface may provide habitat for MMHg-producing anaerobic bacteria. Preliminary results from a 2-m nearshore depth profile at Sage Lot Pond indicate HgT in groundwater within the sand aquifer occurred primarily in the > 0.2 μm fraction, with unfiltered concentrations exceeding 100 pM. Filtered (< 0.2 μm) HgT in groundwater was substantially lower (~ 5 pM). In contrast, HgT concentrations in filtered and unfiltered pore water within the peat layer were similar and ranged from about 2 to 3 pM. Complexation between mercury and dissolved organic carbon may account for the elevated fraction of filtered HgT in peat pore water. Although MMHg in both groundwater and pore water remained around 1 pM throughout our depth profile, we observed an increase in sediment MMHg (0.3 to 1.6 μg/kg) at the peat-sand interface. MMHg comprised ~50% of the HgT concentration in pore water suggesting mercury in the salt marsh peat is biologically available.

  3. Microbial community analysis of anaerobic reactors treating soft drink wastewater.

    PubMed

    Narihiro, Takashi; Kim, Na-Kyung; Mei, Ran; Nobu, Masaru K; Liu, Wen-Tso

    2015-01-01

    The anaerobic packed-bed (AP) and hybrid packed-bed (HP) reactors containing methanogenic microbial consortia were applied to treat synthetic soft drink wastewater, which contains polyethylene glycol (PEG) and fructose as the primary constituents. The AP and HP reactors achieved high COD removal efficiency (>95%) after 80 and 33 days of the operation, respectively, and operated stably over 2 years. 16S rRNA gene pyrotag analyses on a total of 25 biofilm samples generated 98,057 reads, which were clustered into 2,882 operational taxonomic units (OTUs). Both AP and HP communities were predominated by Bacteroidetes, Chloroflexi, Firmicutes, and candidate phylum KSB3 that may degrade organic compound in wastewater treatment processes. Other OTUs related to uncharacterized Geobacter and Spirochaetes clades and candidate phylum GN04 were also detected at high abundance; however, their relationship to wastewater treatment has remained unclear. In particular, KSB3, GN04, Bacteroidetes, and Chloroflexi are consistently associated with the organic loading rate (OLR) increase to 1.5 g COD/L-d. Interestingly, KSB3 and GN04 dramatically decrease in both reactors after further OLR increase to 2.0 g COD/L-d. These results indicate that OLR strongly influences microbial community composition. This suggests that specific uncultivated taxa may take central roles in COD removal from soft drink wastewater depending on OLR. PMID:25748027

  4. Microbial Community Analysis of Anaerobic Reactors Treating Soft Drink Wastewater

    PubMed Central

    Narihiro, Takashi; Kim, Na-Kyung; Mei, Ran; Nobu, Masaru K.; Liu, Wen-Tso

    2015-01-01

    The anaerobic packed-bed (AP) and hybrid packed-bed (HP) reactors containing methanogenic microbial consortia were applied to treat synthetic soft drink wastewater, which contains polyethylene glycol (PEG) and fructose as the primary constituents. The AP and HP reactors achieved high COD removal efficiency (>95%) after 80 and 33 days of the operation, respectively, and operated stably over 2 years. 16S rRNA gene pyrotag analyses on a total of 25 biofilm samples generated 98,057 reads, which were clustered into 2,882 operational taxonomic units (OTUs). Both AP and HP communities were predominated by Bacteroidetes, Chloroflexi, Firmicutes, and candidate phylum KSB3 that may degrade organic compound in wastewater treatment processes. Other OTUs related to uncharacterized Geobacter and Spirochaetes clades and candidate phylum GN04 were also detected at high abundance; however, their relationship to wastewater treatment has remained unclear. In particular, KSB3, GN04, Bacteroidetes, and Chloroflexi are consistently associated with the organic loading rate (OLR) increase to 1.5 g COD/L-d. Interestingly, KSB3 and GN04 dramatically decrease in both reactors after further OLR increase to 2.0 g COD/L-d. These results indicate that OLR strongly influences microbial community composition. This suggests that specific uncultivated taxa may take central roles in COD removal from soft drink wastewater depending on OLR. PMID:25748027

  5. Treating Meningitis

    MedlinePlus

    ... ways to treat bacterial meningitis. 1 They compared steroids (dexamethasone) with pla- cebo. The doctors gave medication ( ... compared anti- biotics by themselves with antibiotics plus steroids. Dr. Fritz and colleagues compared the mortality (deaths) ...

  6. Ecological and evolutionary consequences of biotic homogenization.

    PubMed

    Olden, Julian D; Leroy Poff, N; Douglas, Marlis R; Douglas, Michael E; Fausch, Kurt D

    2004-01-01

    Biotic homogenization, the gradual replacement of native biotas by locally expanding non-natives, is a global process that diminishes floral and faunal distinctions among regions. Although patterns of homogenization have been well studied, their specific ecological and evolutionary consequences remain unexplored. We argue that our current perspective on biotic homogenization should be expanded beyond a simple recognition of species diversity loss, towards a synthesis of higher order effects. Here, we explore three distinct forms of homogenization (genetic, taxonomic and functional), and discuss their immediate and future impacts on ecological and evolutionary processes. Our goal is to initiate future research that investigates the broader conservation implications of homogenization and to promote a proactive style of adaptive management that engages the human component of the anthropogenic blender that is currently mixing the biota on Earth. PMID:16701221

  7. CodY Is a Global Regulator of Virulence-Associated Properties for Clostridium perfringens Type D Strain CN3718

    PubMed Central

    Li, Jihong; Ma, Menglin; Sarker, Mahfuzur R.; McClane, Bruce A.

    2013-01-01

    ABSTRACT CodY is known to regulate various virulence properties in several Gram-positive bacteria but has not yet been studied in the important histotoxic and intestinal pathogen Clostridium perfringens. The present study prepared an isogenic codY-null mutant in C. perfringens type D strain CN3718 by insertional mutagenesis using the Targetron system. Western blot analysis indicated that, relative to wild-type CN3718 or a complementing strain, this isogenic codY mutant produces reduced levels of epsilon toxin (ETX). Using supernatants from cultures of the wild-type, codY-null mutant, and complementing strains, CodY regulation of ETX production was shown to have cytotoxic consequences for MDCK cells. The CodY regulatory effect on ETX production was specific, since the codY-null mutant still made wild-type levels of alpha-toxin and perfringolysin O. Sialidase activity measurements and sialidase Western blot analysis of supernatants from CN3718 and its isogenic derivatives showed that CodY represses overall exosialidase activity due to a reduced presence of NanH in culture supernatants. Inactivation of the codY gene significantly decreased the adherence of CN3718 vegetative cells or spores to host Caco-2 cells. Finally, the codY mutant showed increased spore formation under vegetative growth conditions, although germination of these spores was impaired. Overall, these results identify CodY as a global regulator of many C. perfringens virulence-associated properties. Furthermore, they establish that, via CodY, CN3718 coordinately regulates many virulence-associated properties likely needed for intestinal infection. PMID:24105766

  8. COD and BOD reduction from coffee processing wastewater using Avacado peel carbon.

    PubMed

    Devi, Rani; Singh, Vijender; Kumar, Ashok

    2008-04-01

    The aim of this study was the assessment of reduction of chemical oxygen demand (COD) and biological oxygen demand (BOD) of wastewater from coffee processing plant using activated carbon made up of Avacado Peels. The complete study was done in batch mode to investigate the effect of operating parameters. The results of the COD and BOD concentration reduction with avocado peel carbon (APC) and commercial activated carbon (CAC) were compared and optimum operating conditions were determined for maximum reduction. Adsorption isotherm was also studied besides the calculation of optimum treatment parameters for maximum reduction of COD and BOD concentration from effluent of the coffee processing plant. The maximum percentage reduction of COD and BOD concentration under optimum operating conditions using APC was 98.20% and 99.18% respectively and with CAC this reduction was 99.02% and 99.35% respectively. As the adsorption capacity of APC is comparable with that of CAC for reduction of COD and BOD concentration, it could be a lucrative technique for treatment of domestic wastewater generated in decentralized sectors. PMID:17493806

  9. Life-history evolution and elevated natural mortality in a population of Atlantic cod (Gadus morhua)

    PubMed Central

    Swain, Douglas P

    2011-01-01

    Fisheries-induced evolution has been hypothesized to delay the recovery of collapsed fish stocks through effects on their productivity. The cod stock in the southern Gulf of St. Lawrence (SGSL) collapsed in the early 1990s and has shown no recovery since then, due mainly to high natural mortality of adult cod. Age and size at maturation of SGSL cod decreased sharply over time in cohorts produced in the 1950s and 1960s, likely reflecting an evolutionary response to intensified fishing, and have remained low since then, despite severe reductions in fishing mortality over the past 15 years. A predicted consequence of early maturation is increased natural mortality due to higher costs to reproduction. Early maturation may be a cause of increases in natural mortality of SGSL cod in the 1970s but does not appear to be related to the much larger increases since then. Instead, the current high natural mortality of SGSL cod appears to be primarily a cause, rather than a consequence, of the continued early maturation in this population, now replacing fishing mortality as the agent of selection favouring early maturity. This striking example of the failure to reverse fisheries-induced evolution by relaxing fishing pressure emphasizes the need for management strategies that minimize the chances of harvest-induced genetic change. PMID:25567950

  10. Spawning behavior in Atlantic cod: analysis by use of data storage tags

    USGS Publications Warehouse

    Grabowski, Timothy B.; Thorsteinsson, Vilhjalmur; Marteinsdóttir, Gudrún

    2014-01-01

     Electronic data storage tags (DSTs) were implanted into Atlantic cod captured in Icelandic waters from 2002 to 2007 and the depth profiles recovered from these tags (females: n = 31, males: n = 27) were used to identify patterns consistent with published descriptions of cod courtship and spawning behavior. The individual periods of time that males spent exhibiting behavior consistent with being present in a spawning aggregation—i.e. periods consisting of a clear tidal signature in the DST depth profile associated with an individual remaining on or near the substrate—were longer than those of females. Over the course of a spawning season, male cod spent approximately twice the amount of time in spawning aggregations than females, but female cod visited more aggregations per unit time. On average, males participated in approximately 57% more putative spawning events, i.e. vertical ascents potentially corresponding to gamete release, than did females. However, males <85 cm total length participated in the same number of putative spawning events as females of comparable size. In both sexes, larger individuals and/or individuals that spent a longer period of time within an aggregation participated in a larger number of putative spawning events. Although further validation and refinement is necessary, particularly in the identification of spawning events, the ability offered by DSTs to quantify cod spawning behavior may aid in the development of management and conservation plans.

  11. Food intake of young cod and flounder in a shallow bay on the Swedish west coast

    NASA Astrophysics Data System (ADS)

    Pihl, L.

    The importance of shallow soft bottom areas as nursery grounds for I-ground cod, Gadus morhua, and I- to IV-group flounder, Platichthys flesus, was investigated in a 20 000 m 2 bay, 0 to 1 m deep, on the Swedish west coast. To estimate the amount of visiting fish and their food intake the bay was enclosed with a net once a month from July to November 1979 and from April to November 1980. At each occasion about 60 cods and 8 to 50 flounders were caught. The total biomass of the cod and flounder was 1 to 14 kg and 2 to 13 kg wet weight, respectively. The cod preyed on mobile epifauna such as Carcinus maenas, Crangon crangon and Pomatoschistus spp., whereas the flounder was eating infauna mainly Mya arenaria, Cardium spp. and Nereis spp. The food intake within the area was calculated to approximate 35 and 10 kg wet weight from April to November for cod and flounder, respectively.

  12. Diel variation in feeding and movement patterns of juvenile Atlantic cod at offshore wind farms

    NASA Astrophysics Data System (ADS)

    Reubens, Jan T.; De Rijcke, Maarten; Degraer, Steven; Vincx, Magda

    2014-01-01

    Atlantic cod (Gadus morhua) is a commercially important fish species suffering from overexploitation in the North-East Atlantic. In recent years, their natural environment is being intensively altered by the construction of offshore wind farms in many coastal areas. These constructions form artificial reefs influencing local biodiversity and ecosystem functioning. It has been demonstrated that Atlantic cod is present in the vicinity of these constructions. However, empirical data concerning the diel activity and feeding behaviour of Atlantic cod in the vicinity of these artificial reefs is lacking. Atlantic cod has a flexible diel activity cycle linked to spatio-temporal variations in food availability and predation risk. In this study we integrated acoustic telemetry with stomach content analysis to quantify diel activity and evaluate diel feeding patterns at a windmill artificial reef (WAR) in the Belgian part of the North Sea. Atlantic cod exhibited crepuscular movements related to feeding activity; a 12 h cycle was found and the highest catch rates and stomach fullness were recorded close to sunset and sunrise. It is suggested that the observed diel movement pattern is related to the prey species community and to predation pressure. Foraging at low ambient light levels (i.e. at dusk and dawn) probably causes a trade-off between foraging success and reducing predation pressure. Fish did not leave the area in-between feeding periods. Hence other benefits (i.e. shelter against currents and predators) besides food availability stimulate the aggregation behaviour at the WARs.

  13. Gene regulation of lipid and phospholipid metabolism in Atlantic cod (Gadus morhua) larvae.

    PubMed

    Li, Keshuai; Østensen, Mari-Ann; Attramadal, Kari; Winge, Per; Sparstad, Torfinn; Bones, Atle M; Vadstein, Olav; Kjørsvik, Elin; Olsen, Yngvar

    2015-12-01

    The mechanism of essentiality of dietary phospholipid (PL) for larval fish is not clear. The main objective of the present study was to determine if the PL requirement of Atlantic cod larvae was due to any genetic impairment caused by functional immaturity. Cod larvae were sampled at 1, 3, 8, 13, 17, 18, 30, 42 and 60 days post hatch (dph) for transcriptome analysis using a recently developed microarray. The fatty acid profile and gene expression levels of cod larvae at 17 dph were compared after feeding differently enriched rotifers, which contained different DHA levels in PL. No significant differences (p<0.05) were found for the two rotifer diets in the overall gene expression level of cod larvae, their growth and survival, and their DHA levels in total lipid and PL fraction. The fatty acid data suggested that dietary EPA was elongated to DPA by cod larvae, and a threshold DHA level in PL to maintain membrane fluidity and other functions may exist. There appeared to be no major effect of development on the expression of key genes of PL biosynthesis suggesting no genetic constrain in early developmental stages. Our overall data suggested that besides the possible limited de novo PC synthesis ability in the intestine, other metabolic constraints should also be considered, especially the possible low input of bile PC as a result of immature liver. Further studies are needed to elucidate the gene expression level and enzyme activity in the PL biosynthesis pathways for specific tissue or cells. PMID:26310360

  14. Spawning phenology and geography of Aleutian Islands and eastern Bering Sea Pacific cod (Gadus macrocephalus)

    NASA Astrophysics Data System (ADS)

    Neidetcher, Sandra K.; Hurst, Thomas P.; Ciannelli, Lorenzo; Logerwell, Elizabeth A.

    2014-11-01

    Pacific cod (Gadus macrocephalus) is an economically and ecologically important species in the southeastern Bering Sea and Aleutian Islands, yet little is known about the spawning dynamics of Pacific cod in these regions. To address this knowledge gap, we applied a gross anatomical maturity key for Pacific cod to describe temporal and spatial patterns of reproductive status over three winter spawning seasons: 2005, 2006, and 2007. Maturity status of female Pacific cod was assessed by fishery observers during sampling of commercial catches and used to construct maps showing spawning activity in the Bering Sea and Aleutian Islands. Most spawning activity was observed on the Bering Sea shelf and Aleutian Island plateaus between 100 and 200 m depth. Data for those days when a high percentage of spawning stage fish were observed were used to identify areas with concentrations of spawning fish. Spawning concentrations were identified north of Unimak Island, in the vicinity of the Pribilof Islands, at the shelf break near Zhemchug Canyon, and adjacent to islands in the central and western Aleutian Islands along the continental shelf. The spawning season was found to begin in the last days of February or early March and extend through early to mid-April. Variation in spawning time (averaging ~10 days between years) may have been associated with a change from warm (2005) to cold (2007) climate conditions during the study period. Our information on Pacific cod spawning patterns will help inform fishery management decisions, models of spawning and larval dispersal and the spatial structure of the stock.

  15. Stable Isotope Evidence for Late Medieval (14th–15th C) Origins of the Eastern Baltic Cod (Gadus morhua) Fishery

    PubMed Central

    Orton, David C.; Makowiecki, Daniel; de Roo, Tessa; Johnstone, Cluny; Harland, Jennifer; Jonsson, Leif; Heinrich, Dirk; Enghoff, Inge Bødker; Lõugas, Lembi; Van Neer, Wim; Ervynck, Anton; Hufthammer, Anne Karin; Amundsen, Colin; Jones, Andrew K. G.; Locker, Alison; Hamilton-Dyer, Sheila; Pope, Peter; MacKenzie, Brian R.; Richards, Michael; O'Connell, Tamsin C.; Barrett, James H.

    2011-01-01

    Although recent historical ecology studies have extended quantitative knowledge of eastern Baltic cod (Gadus morhua) exploitation back as far as the 16th century, the historical origin of the modern fishery remains obscure. Widespread archaeological evidence for cod consumption around the eastern Baltic littoral emerges around the 13th century, three centuries before systematic documentation, but it is not clear whether this represents (1) development of a substantial eastern Baltic cod fishery, or (2) large-scale importation of preserved cod from elsewhere. To distinguish between these hypotheses we use stable carbon and nitrogen isotope analysis to determine likely catch regions of 74 cod vertebrae and cleithra from 19 Baltic archaeological sites dated from the 8th to the 16th centuries. δ13C and δ15N signatures for six possible catch regions were established using a larger sample of archaeological cod cranial bones (n = 249). The data strongly support the second hypothesis, revealing widespread importation of cod during the 13th to 14th centuries, most of it probably from Arctic Norway. By the 15th century, however, eastern Baltic cod dominate within our sample, indicating the development of a substantial late medieval fishery. Potential human impact on cod stocks in the eastern Baltic must thus be taken into account for at least the last 600 years. PMID:22110675

  16. String pair production in non homogeneous backgrounds

    NASA Astrophysics Data System (ADS)

    Bolognesi, S.; Rabinovici, E.; Tallarita, G.

    2016-04-01

    We consider string pair production in non homogeneous electric backgrounds. We study several particular configurations which can be addressed with the Euclidean world-sheet instanton technique, the analogue of the world-line instanton for particles. In the first case the string is suspended between two D-branes in flat space-time, in the second case the string lives in AdS and terminates on one D-brane (this realizes the holographic Schwinger effect). In some regions of parameter space the result is well approximated by the known analytical formulas, either the particle pair production in non-homogeneous background or the string pair production in homogeneous background. In other cases we see effects which are intrinsically stringy and related to the non-homogeneity of the background. The pair production is enhanced already for particles in time dependent electric field backgrounds. The string nature enhances this even further. For spacial varying electrical background fields the string pair production is less suppressed than the rate of particle pair production. We discuss in some detail how the critical field is affected by the non-homogeneity, for both time and space dependent electric field backgrouds. We also comment on what could be an interesting new prediction for the small field limit. The third case we consider is pair production in holographic confining backgrounds with homogeneous and non-homogeneous fields.

  17. Deforestation homogenizes tropical parasitoid-host networks.

    PubMed

    Laliberté, Etienne; Tylianakis, Jason M

    2010-06-01

    Human activities drive biotic homogenization (loss of regional diversity) of many taxa. However, whether species interaction networks (e.g., food webs) can also become homogenized remains largely unexplored. Using 48 quantitative parasitoid-host networks replicated through space and time across five tropical habitats, we show that deforestation greatly homogenized network structure at a regional level, such that interaction composition became more similar across rice and pasture sites compared with forested habitats. This was not simply caused by altered consumer and resource community composition, but was associated with altered consumer foraging success, such that parasitoids were more likely to locate their hosts in deforested habitats. Furthermore, deforestation indirectly homogenized networks in time through altered mean consumer and prey body size, which decreased in deforested habitats. Similar patterns were obtained with binary networks, suggesting that interaction (link) presence-absence data may be sufficient to detect network homogenization effects. Our results show that tropical agroforestry systems can support regionally diverse parasitoid-host networks, but that removal of canopy cover greatly homogenizes the structure of these networks in space, and to a lesser degree in time. Spatiotemporal homogenization of interaction networks may alter coevolutionary outcomes and reduce ecological resilience at regional scales, but may not necessarily be predictable from community changes observed within individual trophic levels. PMID:20583715

  18. Homogenization method based on the inverse problem

    SciTech Connect

    Tota, A.; Makai, M.

    2013-07-01

    We present a method for deriving homogeneous multi-group cross sections to replace a heterogeneous region's multi-group cross sections; providing that the fluxes and the currents on the external boundary, and the region averaged fluxes are preserved. The method is developed using diffusion approximation to the neutron transport equation in a symmetrical slab geometry. Assuming that the boundary fluxes are given, two response matrices (RMs) can be defined. The first derives the boundary current from the boundary flux, the second derives the flux integral over the region from the boundary flux. Assuming that these RMs are known, we present a formula which reconstructs the multi-group cross-section matrix and the diffusion coefficients from the RMs of a homogeneous slab. Applying this formula to the RMs of a slab with multiple homogeneous regions yields a homogenization method; which produce such homogenized multi-group cross sections and homogenized diffusion coefficients, that the fluxes and the currents on the external boundary, and the region averaged fluxes are preserved. The method is based on the determination of the eigenvalues and the eigenvectors of the RMs. We reproduce the four-group cross section matrix and the diffusion constants from the RMs in numerical examples. We give conditions for replacing a heterogeneous region by a homogeneous one so that the boundary current and the region-averaged flux are preserved for a given boundary flux. (authors)

  19. Effect of petroleum aromatic hydrocarbons on monogeneids parasitizing Atlantic cod, Gadus morhua L

    SciTech Connect

    Khan, R.A.; Kiceniuk, J.W.

    1988-07-01

    Fish gills appear to be more susceptible than other tissues to toxicants. The latter include petroleum aromatic hydrocarbons, which can induce lesions characterized by excessive mucus secretion, hyperplasia, fusion of secondary gill lamellae and capillary dilation. Fish are also natural hosts to several species of ectoparasites, especially monogeneans which live among the gill filaments. A previous study on the interrelation of water quality, gill parasites and gill pathology provided evidence that fish living in habitats degraded by pollutants such as Biscayne Bay, Florida, were heavily infested with monogeneids especially when gill lesions were severe. Atlantic cod, Gadus morhua, are hosts to monogeneans. The authors reported previously that crude oil fractions induced gill lesions in cod and also affected some gastrointestinal parasites. In the light of these reports, a study was undertaken to ascertain whether any relationship existed between gill lesions and gill parasites in cod following chronic exposure to petroleum hydrocarbons.

  20. Effect of ocean acidification on marine fish sperm (Baltic cod: Gadus morhua)

    NASA Astrophysics Data System (ADS)

    Frommel, A. Y.; Stiebens, V.; Clemmesen, C.; Havenhand, J.

    2010-12-01

    Ocean acidification, as a consequence of increasing marine pCO2, may have severe effects on the physiology of marine organisms. However, experimental studies remain scarce, in particular concerning fish. While adults will most likely remain relatively unaffected by changes in seawater pH, early life-history stages are potentially more sensitive - particularly the critical stage of fertilization, in which sperm motility plays a central role. In this study, the effects of ocean acidification (decrease of pHT to 7.55) on sperm motility of Baltic cod, Gadus morhua, were assessed. We found no significant effect of decreased pH on sperm speed, rate of change of direction or percent motility for the population of cod analyzed. We predict that future ocean acidification will probably not pose a problem for sperm behavior, and hence fertilization success, of Baltic cod.

  1. Effect of ocean acidification on marine fish sperm (Baltic cod: Gadus morhua)

    NASA Astrophysics Data System (ADS)

    Frommel, A. Y.; Stiebens, V.; Clemmesen, C.; Havenhand, J.

    2010-08-01

    Ocean acidification, as a consequence of increasing marine pCO2, may have severe effects on the physiology of marine organisms. However, experimental studies remain scarce, in particular concerning fish. While adults will most likely remain relatively unaffected by changes in seawater pH, early life-history stages are potentially more sensitive - particularly the critical stage of fertilization, in which sperm motility plays a central role. In this study, the effects of ocean acidification (decrease of pH to 7.55) on sperm motility of Baltic cod, Gadus morhua, were assessed. We found no significant effect of decreased pH on sperm speed, rate of change of direction or percent motility for the population of cod analyzed. We predict that future ocean acidification will probably not pose a problem for sperm behavior, and hence fertilization success, of Baltic cod.

  2. Microbial community characteristics during simultaneous nitrification-denitrification process: effect of COD/TP ratio.

    PubMed

    Zhang, Jian; Jia, Wenlin; Wang, Rong; Ngo, Huu Hao; Guo, Wenshan; Xie, Huijun; Liang, Shuang

    2016-02-01

    To evaluate the impact of chemical oxygen demand (COD)/total phosphorus (TP) ratio on microbial community characteristics during low-oxygen simultaneous nitrification and denitrification process, three anaerobic-aeration (low-oxygen) sequencing batch reactors, namely R1, R2, and R3, were performed under three different COD/TP ratios of 91.6, 40.8, and 27.6. The community structures of each reactor were analyzed via molecular biological technique. The results showed that the composition of ammonia-oxidizing bacteria (AOB) was affected, indicated by Shannon indexes of the samples from R1, R2, and R3. Nitrosomonas was identified to be the dominant AOB in all SBRs. Moreover, the copy numbers of nitrifiers were more than those of denitrifiers, and the phosphorus-accumulating organisms to glycogen-accumulating organisms ratio increased with the decrease of COD/TP ratio. PMID:26429138

  3. Higher Order Macro Coefficients in Periodic Homogenization

    NASA Astrophysics Data System (ADS)

    Conca, Carlos; San Martin, Jorge; Smaranda, Loredana; Vanninathan, Muthusamy

    2011-09-01

    A first set of macro coefficients known as the homogenized coefficients appear in the homogenization of PDE on periodic structures. If energy is increased or scale is decreased, these coefficients do not provide adequate approximation. Using Bloch decomposition, it is first realized that the above coefficients correspond to the lowest energy and the largest scale. This naturally paves the way to introduce other sets of macro coefficients corresponding to higher energies and lower scales which yield better approximation. The next task is to compare their properties with those of the homogenized coefficients. This article reviews these developments along with some new results yet to be published.

  4. Historical Arctic Logbooks Provide Insights into Past Diets and Climatic Responses of Cod.

    PubMed

    Townhill, Bryony L; Maxwell, David; Engelhard, Georg H; Simpson, Stephen D; Pinnegar, John K

    2015-01-01

    Gadus morhua (Atlantic cod) stocks in the Barents Sea are currently at levels not seen since the 1950s. Causes for the population increase last century, and understanding of whether such large numbers will be maintained in the future, are unclear. To explore this, we digitised and interrogated historical cod catch and diet datasets from the Barents Sea. Seventeen years of catch data and 12 years of prey data spanning 1930-1959 cover unexplored spatial and temporal ranges, and importantly capture the end of a previous warm period, when temperatures were similar to those currently being experienced. This study aimed to evaluate cod catch per unit effort and prey frequency in relation to spatial, temporal and environmental variables. There was substantial spatio-temporal heterogeneity in catches through the time series. The highest catches were generally in the 1930s and 1940s, although at some localities more cod were recorded late in the 1950s. Generalized Additive Models showed that environmental, spatial and temporal variables are all valuable descriptors of cod catches, with the highest occurring from 15-45°E longitude and 73-77°N latitude, at bottom temperatures between 2 and 4°C and at depths between 150 and 250 m. Cod diets were highly variable during the study period, with frequent changes in the relative frequencies of different prey species, particularly Mallotus villosus (capelin). Environmental variables were particularly good at describing the importance of capelin and Clupea harengus (herring) in the diet. These new analyses support existing knowledge about how the ecology of the region is controlled by climatic variability. When viewed in combination with more recent data, these historical relationships will be valuable in forecasting the future of Barents Sea fisheries, and in understanding how environments and ecosystems may respond. PMID:26331271

  5. Synthesis, structure, and emission spectroscopy of luminescent Pt(COD)(dithiolate) complexes

    SciTech Connect

    Bevilacqua, J.M.; Zuleta, J.A.; Eisenberg, R.

    1993-08-18

    The synthesis, characterization, X-ray structure determination and emission spectroscopy of two Pt(COD)(S-S) complexes are reported where COD = 1,5-cycloctadiene (COD) and S-S is maleonitriledithiolate (mnt) for complex 1 and 1-(ethoxycarbonyl)-1-cyanoethylene-2,2-dithiolate (ecda) for complex 2. Both complexes are isolated in high yield from the reaction of Pt(COD)Cl{sub 2} and the corresponding dianionic dithiolate salt. Orange crystals of 1 (C{sub 12}H{sub 12}N{sub 2}PtS{sub 2}) are monoclinic, space group P2{sub 1}/n (No. 14). Each complex possess a square planar structure with chelating diolefin and dithiolate ligands. Proton NMR spectroscopy shows that the solid-state structures are maintained in solution. The complexes are luminescent at low temperature in the solid state and in frozen glasses. In the solid state at 77 K, Pt(COD)(mnt) exhibits a highly structured emission ({lambda}{sub max} = 560 nm, 17.9 kcm{sup {minus}1}) with a vibronic progression of {approximately}1400 cm{sup {minus}1}, whereas for Pt(COD)(ecda), the emission is broad and featureless ({lambda}{sub max} = 525 nm, 19.0 kcm{sup {minus}1}). The emissive state for both complexes is assigned as a metal-to-dithiolate charge transfer with differences in the structure and energy of the emissions resulting from differences in the {pi}*{sub dithiolate} orbital of the mnt and ecda ligands.

  6. Habitat choice by juvenile cod ( Gadus morhua L.) on sandy soft bottoms with different vegetation types

    NASA Astrophysics Data System (ADS)

    Borg, Å.; Pihl, L.; Wennhage, H.

    1997-08-01

    Habitat choice by juvenile cod ( Gadus morhua L.) on sandy bottoms with different vegetation types was studied in laboratory. The experiment was conducted day and night in flow-through tanks on two different size-classes of cod (7-13 and 17-28 cm TL). Four habitats, typical of shallow soft bottoms on the Swedish west coast: Fucus vesiculosus, Zostera marina, Cladophora sp. and bare sand, were set up pair-wise in six combinations. The main difference between habitats in this study was vegetation structure, since all parameters except vegetation type was considered equal for both sides of the experimental tanks and natural prey was eliminated. The results showed a difference in habitat utilization by juvenile cod between day (light) and night (dark). During day time the fishes showed a significant preference for vegetation, while nocturnally no significant choice of habitat was made. Both size-classes preferred Fucus, considered the most complex habitat in this study, when this was available. The smaller size-class seemed to be able to utilize the other vegetation types as well, always preferring vegetation over sand. Larger juvenile cod, on the other hand, appeared to be restricted to Fucus. This difference in habitat choice by the two size-classes might be due to a greater dependence on shelter from predation by the smaller juveniles, causing them to associate more strongly with vegetation. The larger juveniles avoided Cladophora, since they might have difficulties in entering the compact structure of this filamentous algae. Availability of vegetation at day time, as a predation refuge, as well as of open sandy areas for feeding during night, thus seems to be important for juvenile cod. It is concluded that eutrophication-induced changes in habitat structure, such as increased dominance by filamentous algae, could alter the availability of predation refuges and foraging habitats for juvenile cod.

  7. Historical Arctic Logbooks Provide Insights into Past Diets and Climatic Responses of Cod

    PubMed Central

    Townhill, Bryony L.; Maxwell, David; Engelhard, Georg H.; Simpson, Stephen D.; Pinnegar, John K.

    2015-01-01

    Gadus morhua (Atlantic cod) stocks in the Barents Sea are currently at levels not seen since the 1950s. Causes for the population increase last century, and understanding of whether such large numbers will be maintained in the future, are unclear. To explore this, we digitised and interrogated historical cod catch and diet datasets from the Barents Sea. Seventeen years of catch data and 12 years of prey data spanning 1930–1959 cover unexplored spatial and temporal ranges, and importantly capture the end of a previous warm period, when temperatures were similar to those currently being experienced. This study aimed to evaluate cod catch per unit effort and prey frequency in relation to spatial, temporal and environmental variables. There was substantial spatio-temporal heterogeneity in catches through the time series. The highest catches were generally in the 1930s and 1940s, although at some localities more cod were recorded late in the 1950s. Generalized Additive Models showed that environmental, spatial and temporal variables are all valuable descriptors of cod catches, with the highest occurring from 15–45°E longitude and 73–77°N latitude, at bottom temperatures between 2 and 4°C and at depths between 150 and 250 m. Cod diets were highly variable during the study period, with frequent changes in the relative frequencies of different prey species, particularly Mallotus villosus (capelin). Environmental variables were particularly good at describing the importance of capelin and Clupea harengus (herring) in the diet. These new analyses support existing knowledge about how the ecology of the region is controlled by climatic variability. When viewed in combination with more recent data, these historical relationships will be valuable in forecasting the future of Barents Sea fisheries, and in understanding how environments and ecosystems may respond. PMID:26331271

  8. Spatio-temporal variability of the North Sea cod recruitment in relation to temperature and zooplankton.

    PubMed

    Nicolas, Delphine; Rochette, Sébastien; Llope, Marcos; Licandro, Priscilla

    2014-01-01

    The North Sea cod (Gadus morhua, L.) stock has continuously declined over the past four decades linked with overfishing and climate change. Changes in stock structure due to overfishing have made the stock largely dependent on its recruitment success, which greatly relies on environmental conditions. Here we focus on the spatio-temporal variability of cod recruitment in an effort to detect changes during the critical early life stages. Using International Bottom Trawl Survey (IBTS) data from 1974 to 2011, a major spatio-temporal change in the distribution of cod recruits was identified in the late 1990s, characterized by a pronounced decrease in the central and southeastern North Sea stock. Other minor spatial changes were also recorded in the mid-1980s and early 1990s. We tested whether the observed changes in recruits distribution could be related with direct (i.e. temperature) and/or indirect (i.e. changes in the quantity and quality of zooplankton prey) effects of climate variability. The analyses were based on spatially-resolved time series, i.e. sea surface temperature (SST) from the Hadley Center and zooplankton records from the Continuous Plankton Recorder Survey. We showed that spring SST increase was the main driver for the most recent decrease in cod recruitment. The late 1990s were also characterized by relatively low total zooplankton biomass, particularly of energy-rich zooplankton such as the copepod Calanus finmarchicus, which have further contributed to the decline of North Sea cod recruitment. Long-term spatially-resolved observations were used to produce regional distribution models that could further be used to predict the abundance of North Sea cod recruits based on temperature and zooplankton food availability. PMID:24551103

  9. Bacterial Colonization of Cod (Gadus morhua L.) and Halibut (Hippoglossus hippoglossus) Eggs in Marine Aquaculture

    PubMed Central

    Hansen, Geir Høvik; Olafsen, Jan A.

    1989-01-01

    Aquaculture has brought about increased interest in mass production of marine fish larvae. Problems such as poor egg quality and mass mortality of fish larvae have been prevalent. The intensive incubation techniques that often result in bacterial overgrowth on fish eggs could affect the commensal relationship between the indigenous microflora and opportunistic pathogens and subsequently hamper egg development, hatching, larval health, and ongrowth. Little information about the adherent microflora on fish eggs is available, and the present study was undertaken to describe the microbial ecology during egg development and hatching of two fish species of potential commercial importance in marine aquaculture. Attachment and development of the bacterial flora on cod (Gadus morhua L.) eggs from fertilization until hatching was studied by scanning electron microscopy. The adherent microflora on cod (G. morhua L.) and halibut (Hippoglossus hippoglossus) eggs during incubation was characterized and grouped by cluster analysis. Marked bacterial growth could be demonstrated 2 h after fertilization, and at hatching eggs were heavily overgrown. Members of the genera Pseudomonas, Alteromonas, Aeromonas, and Flavobacterium were found to dominate on the surface of both cod and halibut eggs. The filamentous bacterium Leucothrix mucor was found on eggs from both species. While growth of L. mucor on halibut eggs was sparse, cod eggs with a hairy appearance due to overgrowth by this bacterium close to hatching were frequently observed. Vibrio fischeri could be detected on cod eggs only, and pathogenic vibrios were not detected. Members of the genera Moraxella and Alcaligenes were found only on halibut eggs. Caulobacter and Seliberia spp. were observed attached to eggs dissected from cod ovaries under sterile conditions, indicating the presence of these bacteria in ovaries before spawning. Adherent strains did not demonstrate antibiotic resistance above a normal level. Attempts to

  10. Lipid and fatty acid compositions of cod ( Gadus morhua), haddock ( Melanogrammus aeglefinus) and halibut ( Hippoglossus hippoglossus)

    NASA Astrophysics Data System (ADS)

    Zeng, Duan; Mai, Kangsen; Ai, Qinghui; Milley, Joyce E.; Lall, Santosh P.

    2010-12-01

    This study was conducted to compare lipid and fatty acid composition of cod, haddock and halibut. Three groups of cod (276 g ± 61 g), haddock (538 g ± 83 g) and halibut (3704 g ± 221 g) were maintained with commercial feeds mainly based on fish meal and marine fish oil for 12 weeks prior to sampling. The fatty acid compositions of muscle and liver were determined by GC/FID after derivatization of extracted lipids into fatty acid methyl esters (FAME). Lipids were also fractionated into neutral and polar lipids using Waters silica Sep-Pak?. The phospholipid fraction was further separated by high-performance thin-layer chromatography (HPTLC) and the FAME profile was obtained. Results of the present study showed that cod and haddock were lean fish and their total muscle lipid contents were 0.8% and 0.7%, respectively, with phospholipid constituting 83.6% and 87.5% of the total muscle lipid, respectively. Halibut was a medium-fat fish and its muscle lipid content was 8%, with 84% of the total muscle lipid being neutral lipid. Total liver lipid contents of cod, haddock and halibut were 36.9%, 67.2% and 30.7%, respectively, of which the neutral lipids accounted for the major fraction (88.1%-97.1%). Polyunsaturated fatty acids were the most abundant in cod and haddock muscle neutral lipid. Monounsaturated fatty acid level was the highest in halibut muscle neutral lipid. Fatty acid compositions of phospholipid were relatively constant. In summary, the liver of cod and haddock as lean fish was the main lipid reserve organ, and structural phospholipid is the major lipid form in flesh. However, as a medium-fat fish, halibut stored lipid in both their liver and muscle.

  11. Adaptation to Low Salinity Promotes Genomic Divergence in Atlantic Cod (Gadus morhua L.).

    PubMed

    Berg, Paul R; Jentoft, Sissel; Star, Bastiaan; Ring, Kristoffer H; Knutsen, Halvor; Lien, Sigbjørn; Jakobsen, Kjetill S; André, Carl

    2015-06-01

    How genomic selection enables species to adapt to divergent environments is a fundamental question in ecology and evolution. We investigated the genomic signatures of local adaptation in Atlantic cod (Gadus morhua L.) along a natural salinity gradient, ranging from 35‰ in the North Sea to 7‰ within the Baltic Sea. By utilizing a 12 K SNPchip, we simultaneously assessed neutral and adaptive genetic divergence across the Atlantic cod genome. Combining outlier analyses with a landscape genomic approach, we identified a set of directionally selected loci that are strongly correlated with habitat differences in salinity, oxygen, and temperature. Our results show that discrete regions within the Atlantic cod genome are subject to directional selection and associated with adaptation to the local environmental conditions in the Baltic- and the North Sea, indicating divergence hitchhiking and the presence of genomic islands of divergence. We report a suite of outlier single nucleotide polymorphisms within or closely located to genes associated with osmoregulation, as well as genes known to play important roles in the hydration and development of oocytes. These genes are likely to have key functions within a general osmoregulatory framework and are important for the survival of eggs and larvae, contributing to the buildup of reproductive isolation between the low-salinity adapted Baltic cod and the adjacent cod populations. Hence, our data suggest that adaptive responses to the environmental conditions in the Baltic Sea may contribute to a strong and effective reproductive barrier, and that Baltic cod can be viewed as an example of ongoing speciation. PMID:25994933

  12. Systems Level Analyses Reveal Multiple Regulatory Activities of CodY Controlling Metabolism, Motility and Virulence in Listeria monocytogenes.

    PubMed

    Lobel, Lior; Herskovits, Anat A

    2016-02-01

    Bacteria sense and respond to many environmental cues, rewiring their regulatory network to facilitate adaptation to new conditions/niches. Global transcription factors that co-regulate multiple pathways simultaneously are essential to this regulatory rewiring. CodY is one such global regulator, controlling expression of both metabolic and virulence genes in Gram-positive bacteria. Branch chained amino acids (BCAAs) serve as a ligand for CodY and modulate its activity. Classically, CodY was considered to function primarily as a repressor under rich growth conditions. However, our previous studies of the bacterial pathogen Listeria monocytogenes revealed that CodY is active also when the bacteria are starved for BCAAs. Under these conditions, CodY loses the ability to repress genes (e.g., metabolic genes) and functions as a direct activator of the master virulence regulator gene, prfA. This observation raised the possibility that CodY possesses multiple functions that allow it to coordinate gene expression across a wide spectrum of metabolic growth conditions, and thus better adapt bacteria to the mammalian niche. To gain a deeper understanding of CodY's regulatory repertoire and identify direct target genes, we performed a genome wide analysis of the CodY regulon and DNA binding under both rich and minimal growth conditions, using RNA-Seq and ChIP-Seq techniques. We demonstrate here that CodY is indeed active (i.e., binds DNA) under both conditions, serving as a repressor and activator of different genes. Further, we identified new genes and pathways that are directly regulated by CodY (e.g., sigB, arg, his, actA, glpF, gadG, gdhA, poxB, glnR and fla genes), integrating metabolism, stress responses, motility and virulence in L. monocytogenes. This study establishes CodY as a multifaceted factor regulating L. monocytogenes physiology in a highly versatile manner. PMID:26895237

  13. The Global Regulator CodY Regulates Toxin Gene Expression in Bacillus anthracis and Is Required for Full Virulence▿ †

    PubMed Central

    van Schaik, Willem; Château, Alice; Dillies, Marie-Agnès; Coppée, Jean-Yves; Sonenshein, Abraham L.; Fouet, Agnès

    2009-01-01

    In gram-positive bacteria, CodY is an important regulator of genes whose expression changes upon nutrient limitation and acts as a repressor of virulence gene expression in some pathogenic species. Here, we report the role of CodY in Bacillus anthracis, the etiologic agent of anthrax. Disruption of codY completely abolished virulence in a toxinogenic, noncapsulated strain, indicating that the activity of CodY is required for full virulence of B. anthracis. Global transcriptome analysis of a codY mutant and the parental strain revealed extensive differences. These differences could reflect direct control for some genes, as suggested by the presence of CodY binding sequences in their promoter regions, or indirect effects via the CodY-dependent control of other regulatory proteins or metabolic rearrangements in the codY mutant strain. The differences included reduced expression of the anthrax toxin genes in the mutant strain, which was confirmed by lacZ reporter fusions and immunoblotting. The accumulation of the global virulence regulator AtxA protein was strongly reduced in the mutant strain. However, in agreement with the microarray data, expression of atxA, as measured using an atxA-lacZ transcriptional fusion and by assaying atxA mRNA, was not significantly affected in the codY mutant. An atxA-lacZ translational fusion was also unaffected. Overexpression of atxA restored toxin component synthesis in the codY mutant strain. These results suggest that CodY controls toxin gene expression by regulating AtxA accumulation posttranslationally. PMID:19651859

  14. Systems Level Analyses Reveal Multiple Regulatory Activities of CodY Controlling Metabolism, Motility and Virulence in Listeria monocytogenes

    PubMed Central

    Lobel, Lior; Herskovits, Anat A.

    2016-01-01

    Bacteria sense and respond to many environmental cues, rewiring their regulatory network to facilitate adaptation to new conditions/niches. Global transcription factors that co-regulate multiple pathways simultaneously are essential to this regulatory rewiring. CodY is one such global regulator, controlling expression of both metabolic and virulence genes in Gram-positive bacteria. Branch chained amino acids (BCAAs) serve as a ligand for CodY and modulate its activity. Classically, CodY was considered to function primarily as a repressor under rich growth conditions. However, our previous studies of the bacterial pathogen Listeria monocytogenes revealed that CodY is active also when the bacteria are starved for BCAAs. Under these conditions, CodY loses the ability to repress genes (e.g., metabolic genes) and functions as a direct activator of the master virulence regulator gene, prfA. This observation raised the possibility that CodY possesses multiple functions that allow it to coordinate gene expression across a wide spectrum of metabolic growth conditions, and thus better adapt bacteria to the mammalian niche. To gain a deeper understanding of CodY’s regulatory repertoire and identify direct target genes, we performed a genome wide analysis of the CodY regulon and DNA binding under both rich and minimal growth conditions, using RNA-Seq and ChIP-Seq techniques. We demonstrate here that CodY is indeed active (i.e., binds DNA) under both conditions, serving as a repressor and activator of different genes. Further, we identified new genes and pathways that are directly regulated by CodY (e.g., sigB, arg, his, actA, glpF, gadG, gdhA, poxB, glnR and fla genes), integrating metabolism, stress responses, motility and virulence in L. monocytogenes. This study establishes CodY as a multifaceted factor regulating L. monocytogenes physiology in a highly versatile manner. PMID:26895237

  15. CoD - 24 7599, a new Delta Scuti star discovered with the Whole Earth Telescope

    NASA Astrophysics Data System (ADS)

    Handler, G.

    1993-05-01

    During observing run XCOV7 of the WET (Whole Earth Telescope, R. E. Nather et al. 1990, ApJ 361, 309) network devoted to the recently discovered dwarf nova 1H0857-242 one of the recommended comparison stars, CoD -24o 7599, turned out to be variable. As a result CoD -24o 7599 was chosen as a second target object. After 11 days of high-speed photometry observations, 110.8 hours of Johnson B measurements had been obtained. Including some overlaps, a duty cycle of 40 % was achieved, resulting in the excellent spectral window shown in the upper panel of the figure.

  16. Treating Sludges

    ERIC Educational Resources Information Center

    Josephson, Julian

    1978-01-01

    Discussed are some of the ways to handle municipal and industrial wastewater treatment sludge presented at the 1978 American Chemical Society meeting. Suggestions include removing toxic materials, recovering metals, and disposing treated sewage sludge onto farm land. Arguments for and against land use are also given. (MA)

  17. Non-Homogeneous Fractal Hierarchical Weighted Networks

    PubMed Central

    Dong, Yujuan; Dai, Meifeng; Ye, Dandan

    2015-01-01

    A model of fractal hierarchical structures that share the property of non-homogeneous weighted networks is introduced. These networks can be completely and analytically characterized in terms of the involved parameters, i.e., the size of the original graph Nk and the non-homogeneous weight scaling factors r1, r2, · · · rM. We also study the average weighted shortest path (AWSP), the average degree and the average node strength, taking place on the non-homogeneous hierarchical weighted networks. Moreover the AWSP is scrupulously calculated. We show that the AWSP depends on the number of copies and the sum of all non-homogeneous weight scaling factors in the infinite network order limit. PMID:25849619

  18. Producing tritium in a homogenous reactor

    DOEpatents

    Cawley, William E.

    1985-01-01

    A method and apparatus are described for the joint production and separation of tritium. Tritium is produced in an aqueous homogenous reactor and heat from the nuclear reaction is used to distill tritium from the lower isotopes of hydrogen.

  19. On homogeneous Einstein (α , β) -metrics

    NASA Astrophysics Data System (ADS)

    Yan, Zaili; Deng, Shaoqiang

    2016-05-01

    In this paper, we study homogeneous Einstein (α , β) -metrics. First, we deduce a formula for Ricci curvature of a homogeneous (α , β) -metric. Based on this formula, we obtain a sufficient and necessary condition for a compact homogeneous (α , β) -metric to be Einstein and with vanishing S-curvature. Moreover, we prove that any homogeneous Ricci flat (α , β) space with vanishing S-curvature must be a Minkowski space. Finally, we consider left invariant Einstein (α , β) -metrics on Lie groups with negative Ricci constant. Under some appropriate conditions, we show that the underlying Lie groups must be two step solvable. We also present a more convenient sufficient and necessary condition for the metric to be Einstein in this special case.

  20. Homogeneous cosmological models in Yang's gravitation theory

    NASA Technical Reports Server (NTRS)

    Fennelly, A. J.; Pavelle, R.

    1979-01-01

    We present a dynamic, spatially homogeneous solution of Yang's pure space gravitational field equations which is non-Einsteinian. The predictions of this cosmological model seem to be at variance with observations.

  1. Homogeneous UVA system for corneal cross-linking treatment

    NASA Astrophysics Data System (ADS)

    Ayres Pereira, Fernando R.; Stefani, Mario A.; Otoboni, José A.; Richter, Eduardo H.; Ventura, Liliane

    2010-02-01

    The treatment of keratoconus and corneal ulcers by collagen cross-linking using ultraviolet type A irradiation, combined with photo-sensitizer Riboflavin (vitamin B2), is a promising technique. The standard protocol suggests instilling Riboflavin in the pre-scratched cornea every 5min for 30min, during the UVA irradiation of the cornea at 3mW/cm2 for 30 min. This process leads to an increase of the biomechanical strength of the cornea, stopping the progression, or sometimes, even reversing Keratoconus. The collagen cross-linking can be achieved by many methods, but the utilization of UVA light, for this purpose, is ideal because of its possibility of a homogeneous treatment leading to an equal result along the treated area. We have developed a system, to be clinically used for treatment of unhealthy corneas using the cross-linking technique, which consists of an UVA emitting delivery device controlled by a closed loop system with high homogeneity. The system is tunable and delivers 3-5 mW/cm2, at 365nm, for three spots (6mm, 8mm and 10mm in diameter). The electronics close loop presents 1% of precision, leading to an overall error, after the calibration, of less than 10% and approximately 96% of homogeneity.

  2. Biomethane production in an AnSBBR treating wastewater from biohydrogen process.

    PubMed

    Lullio, T G; Souza, L P; Ratusznei, S M; Rodrigues, J A D; Zaiat, M

    2014-11-01

    An anaerobic sequencing batch reactor containing immobilized biomass (AnSBBR) was used to produce biomethane by treating the effluent from another AnSBBR used to produce biohydrogen from glucose- (AR-EPHG) and sucrose-based (AR-EPHS) wastewater. In addition, biomethane was also produced from sucrose-based synthetic wastewater (AR-S) in a single AnSBBR to compare the performance of biomethane production in two steps (acidogenic and methanogenic) in relation to a one-step operation. The system was operated at 30 °C and at a fixed stirring rate of 300 rpm. For AR-EPHS treatment, concentrations were 1,000, 2,000, 3,000, and 4,000 mg chemical oxygen demand (COD) L(-1) and cycle lengths were 6 and 8 h. The applied volumetric organic loads were 2.15, 4.74, 5.44, and 8.22 g COD L(-1) day(-1). For AR-EPHG treatment, concentration of 4,000 mg COD L(-1) and 4-h cycle length (7.21 g COD L(-1) day(-1)) were used. For AR-S treatment, concentration was 4,000 mg COD L(-1) day(-1) and cycle lengths were 8 (7.04 g COD L(-1) day(-1)) and 12 h (4.76 g COD L(-1) day(-1)). The condition of 8.22 g COD L(-1) day(-1) (AR-EPHS) showed the best performance with respect to the following parameters: applied volumetric organic load of 7.56 g COD L(-1) day(-1), yield between produced methane and removed organic material of 0.016 mol CH4 g COD(-1), CH4 content in the produced biogas of 85 %, and molar methane productivity of 127.9 mol CH4 m(-3) day(-1). In addition, a kinetic study of the process confirmed the trend that, depending on the biodegradability characteristics of the wastewaters used, the two-step treatment (acidogenic for biohydrogen production and methanogenic for biomethane production) has potential advantages over the single-step process. PMID:25149460

  3. Layout optimization using the homogenization method

    NASA Technical Reports Server (NTRS)

    Suzuki, Katsuyuki; Kikuchi, Noboru

    1993-01-01

    A generalized layout problem involving sizing, shape, and topology optimization is solved by using the homogenization method for three-dimensional linearly elastic shell structures in order to seek a possibility of establishment of an integrated design system of automotive car bodies, as an extension of the previous work by Bendsoe and Kikuchi. A formulation of a three-dimensional homogenized shell, a solution algorithm, and several examples of computing the optimum layout are presented in this first part of the two articles.

  4. Layout optimization using the homogenization method

    NASA Astrophysics Data System (ADS)

    Suzuki, Katsuyuki; Kikuchi, Noboru

    A generalized layout problem involving sizing, shape, and topology optimization is solved by using the homogenization method for three-dimensional linearly elastic shell structures in order to seek a possibility of establishment of an integrated design system of automotive car bodies, as an extension of the previous work by Bendsoe and Kikuchi. A formulation of a three-dimensional homogenized shell, a solution algorithm, and several examples of computing the optimum layout are presented in this first part of the two articles.

  5. Noncommutative complex structures on quantum homogeneous spaces

    NASA Astrophysics Data System (ADS)

    Ó Buachalla, Réamonn

    2016-01-01

    A new framework for noncommutative complex geometry on quantum homogeneous spaces is introduced. The main ingredients used are covariant differential calculi and Takeuchi's categorical equivalence for quantum homogeneous spaces. A number of basic results are established, producing a simple set of necessary and sufficient conditions for noncommutative complex structures to exist. Throughout, the framework is applied to the quantum projective spaces endowed with the Heckenberger-Kolb calculus.

  6. Spatial homogenization methods for pin-by-pin neutron transport calculations

    NASA Astrophysics Data System (ADS)

    Kozlowski, Tomasz

    For practical reactor core applications low-order transport approximations such as SP3 have been shown to provide sufficient accuracy for both static and transient calculations with considerably less computational expense than the discrete ordinate or the full spherical harmonics methods. These methods have been applied in several core simulators where homogenization was performed at the level of the pin cell. One of the principal problems has been to recover the error introduced by pin-cell homogenization. Two basic approaches to treat pin-cell homogenization error have been proposed: Superhomogenization (SPH) factors and Pin-Cell Discontinuity Factors (PDF). These methods are based on well established Equivalence Theory and Generalized Equivalence Theory to generate appropriate group constants. These methods are able to treat all sources of error together, allowing even few-group diffusion with one mesh per cell to reproduce the reference solution. A detailed investigation and consistent comparison of both homogenization techniques showed potential of PDF approach to improve accuracy of core calculation, but also reveal its limitation. In principle, the method is applicable only for the boundary conditions at which it was created, i.e. for boundary conditions considered during the homogenization process---normally zero current. Therefore, there exists a need to improve this method, making it more general and environment independent. The goal of proposed general homogenization technique is to create a function that is able to correctly predict the appropriate correction factor with only homogeneous information available, i.e. a function based on heterogeneous solution that could approximate PDFs using homogeneous solution. It has been shown that the PDF can be well approximated by least-square polynomial fit of non-dimensional heterogeneous solution and later used for PDF prediction using homogeneous solution. This shows a promise for PDF prediction for off

  7. 75 FR 71045 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod in the Western Regulatory Area...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-11-22

    ... for groundfish of the GOA (75 FR 11749, March 12, 2010). In accordance with Sec. 679.20(d)(2), the... Economic Zone Off Alaska; Pacific Cod in the Western Regulatory Area of the Gulf of Alaska AGENCY: National...: Temporary rule; prohibition of retention. SUMMARY: NMFS is prohibiting retention of Pacific cod by...

  8. 77 FR 6683 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Using Pot Gear in the...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-09

    ... established by the final 2011 and 2012 harvest specifications for groundfish of the GOA (76 FR 11111, March 1, 2011), revision to the final 2012 harvest specifications for Pacific cod (76 FR 81860, December 29, 2011), and inseason adjustment to the final 2012 harvest specifications for Pacific cod (77 FR...

  9. 77 FR 65640 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Using Pot Gear in the...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-30

    ....20(d)(1)(iii) on October 12, 2012 (77 FR 62464, October 15, 2012). As of October 23, 2012, NMFS has... Economic Zone Off Alaska; Pacific Cod by Vessels Using Pot Gear in the Central Regulatory Area of the Gulf... directed fishing for Pacific cod by vessels using pot gear in the Central Regulatory Area of the Gulf...

  10. 76 FR 9693 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Harvesting Pacific...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-02-22

    ... 2010 and 2011 harvest specifications for groundfish of the GOA (75 FR 11749, March 12, 2010) and inseason adjustment (76 FR 469, January 5, 2010). In accordance with Sec. 679.20(d)(1)(i), the... Economic Zone Off Alaska; Pacific Cod by Vessels Harvesting Pacific Cod for Processing by the...

  11. 77 FR 39183 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Using Jig Gear in the...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-07-02

    ... for groundfish of the GOA (77 FR 15194, March 14, 2012). In accordance with Sec. 679.20(d)(1)(i), the... Economic Zone Off Alaska; Pacific Cod by Vessels Using Jig Gear in the Central Regulatory Area of the Gulf... for Pacific cod by vessels using jig gear in the Central Regulatory Area of the Gulf of Alaska...

  12. 77 FR 19147 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-03-30

    ... February 29, 2012 (77 FR 13013, March 5, 2012). As of March 21, 2012, NMFS has determined that... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... directed fishing for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian...

  13. Anaerobic expanded-bed laboratory digester for the treatment of swine slurries, COD removal and methane generation

    SciTech Connect

    Ranalli, G.; Balsari, P.; Colombo, M.; Sorlini, C.

    1995-10-01

    The performance of a digester, fed with swine slurries, under different COD specific load rates (2.1-30.3 Kg/m{sup 3}.d) and HRT (60-14 h) during start-up and steady-state periods were evaluated. The reactor (6.01 useful volume, 100 cm height, 0.2-12 cm diameter) was filled at 20% (v/v) with marl sand (30/60 mesh) selected among four different materials, after preliminary tests carried out in batch. The expansion of the granular bed up to 30% of useful the volume was obtained recycling the slurries with a peristaltic pump. During the experimental trial, COD influent increased from 5.4 Kg/m{sup 3} to 17.7 Kg/m{sup 3}, while HRT decreased from 60 to 14 h. COD remotion, CH{sub 4} yield and coenzyme F{sub 420} content in biofilm attached to inert matrices were monitored. The best results in COD remotion (72%) were obtained with a specific load of 6.2 Kg COD/m{sup 3}.d and the highest specific methane production (0.2 m{sup 3}/Kg COD rem) with a specific load of 2.2 KgCOD/m{sup 3}.d. The digester continued to run also when HRT was rapidly reduced but went through serious difficulties when specific load was increased up to 70.8 KgCOD/m{sup 3}.d. 29 refs., 4 figs., 4 tabs.

  14. 77 FR 8177 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Using Pot Gear in the...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-14

    ... established by the final 2011 and 2012 harvest specifications for groundfish of the GOA (76 FR 11111, March 1, 2011), revision to the final 2012 harvest specifications for Pacific cod (76 FR 81860, December 29, 2011), and inseason adjustment to the final 2012 harvest specifications for Pacific cod (77 FR...

  15. 77 FR 14305 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Using Jig Gear in the...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-03-09

    ... final 2011 and 2012 harvest specifications for groundfish of the GOA (76 FR 11111, March 1, 2011), revision to the final 2012 harvest specifications for Pacific cod (76 FR 81860, December 29, 2011), and inseason adjustment to the final 2012 harvest specifications for Pacific cod (77 FR 438, January 5,...

  16. 75 FR 69597 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod in the Bering Sea and Aleutian...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-11-15

    ... 2011 harvest specifications for groundfish in the BSAI (75 FR 11778, March 12, 2010). In accordance... Economic Zone Off Alaska; Pacific Cod in the Bering Sea and Aleutian Islands Management Area AGENCY.... ACTION: Temporary rule; closure. SUMMARY: NMFS is prohibiting retention of Pacific cod in the Bering...

  17. 76 FR 5718 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Harvesting Pacific...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-02-02

    ... 2010 and 2011 harvest specifications for groundfish of the GOA (75 FR 11749, March 12, 2010) and inseason adjustment (76 FR 469, January 5, 2010). In accordance with Sec. 679.20(d)(1)(i), the... Economic Zone Off Alaska; Pacific Cod by Vessels Harvesting Pacific Cod for Processing by the...

  18. A spectrum of CodY activities drives metabolic reorganization and virulence gene expression in Staphylococcus aureus.

    PubMed

    Waters, Nicholas R; Samuels, David J; Behera, Ranjan K; Livny, Jonathan; Rhee, Kyu Y; Sadykov, Marat R; Brinsmade, Shaun R

    2016-08-01

    The global regulator CodY controls the expression of dozens of metabolism and virulence genes in the opportunistic pathogen Staphylococcus aureus in response to the availability of isoleucine, leucine and valine (ILV), and GTP. Using RNA-Seq transcriptional profiling and partial activity variants, we reveal that S. aureus CodY activity grades metabolic and virulence gene expression as a function of ILV availability, mediating metabolic reorganization and controlling virulence factor production in vitro. Strains lacking CodY regulatory activity produce a PIA-dependent biofilm, but development is restricted under conditions that confer partial CodY activity. CodY regulates the expression of thermonuclease (nuc) via the Sae two-component system, revealing cascading virulence regulation and factor production as CodY activity is reduced. Proteins that mediate the host-pathogen interaction and subvert the immune response are shut off at intermediate levels of CodY activity, while genes coding for enzymes and proteins that extract nutrients from tissue, that kill host cells, and that synthesize amino acids are among the last genes to be derepressed. We conclude that S. aureus uses CodY to limit host damage to only the most severe starvation conditions, providing insight into one potential mechanism by which S. aureus transitions from a commensal bacterium to an invasive pathogen. PMID:27116338

  19. A bacterial gene codA encoding cytosine deaminase is an effective conditional negative selectable marker in Glycine max

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Background Conditional negative selection is a powerful technique whereby the absence of a gene product allows survival in otherwise lethal conditions. In plants, the Escherichia coli gene codA has been employed as a negative selection marker. CodA is a conditionally lethal dominant gene encoding cy...

  20. 33 CFR 334.60 - Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 3 2011-07-01 2011-07-01 false Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area. 334.60 Section 334.60 Navigation and Navigable Waters... REGULATIONS § 334.60 Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area....

  1. 33 CFR 334.60 - Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 3 2013-07-01 2013-07-01 false Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area. 334.60 Section 334.60 Navigation and Navigable Waters... REGULATIONS § 334.60 Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area....

  2. 33 CFR 334.60 - Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 3 2014-07-01 2014-07-01 false Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area. 334.60 Section 334.60 Navigation and Navigable Waters... REGULATIONS § 334.60 Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area....

  3. 33 CFR 334.60 - Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 3 2012-07-01 2012-07-01 false Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area. 334.60 Section 334.60 Navigation and Navigable Waters... REGULATIONS § 334.60 Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area....

  4. 78 FR 11790 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-20

    ... GOA (77 FR 15194, March 14, 2012) and inseason adjustment to the final 2013 harvest specifications for Pacific cod (78 FR 267, January 3, 2013). In accordance with Sec. 679.20(d)(1)(i), the Administrator... for Pacific cod by catcher vessels (CVs) using trawl gear in the Western Regulatory Area of the...

  5. 77 FR 11412 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-27

    ... established by the final 2011 and 2012 harvest specifications for groundfish of the GOA (76 FR 11111, March 1, 2011), revision to the final 2012 harvest specifications for Pacific cod (76 FR 81860, December 29, 2011), and inseason adjustment to the final 2012 harvest specifications for Pacific cod (77 FR...

  6. 78 FR 25004 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Hook...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-04-29

    ... specifications for groundfish of the GOA (78 FR 13162, February 26, 2013). In accordance with Sec. 679.20(d)(1)(i... directed fishing for Pacific cod by catcher vessels (CVs) using hook-and-line gear in the Western... allowance of the 2013 Pacific cod total allowable catch apportioned to CVs using hook-and-line gear in...

  7. 77 FR 20571 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Hook...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-05

    ... groundfish of the GOA (77 FR 15194, March 14, 2012). In accordance with Sec. 679.20(d)(1)(i), the... directed fishing for Pacific cod by catcher vessels (CVs) using hook-and-line gear in the Western... allowance of the 2012 Pacific cod total allowable catch apportioned to CVs using hook-and-line gear in...

  8. 78 FR 13812 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catch Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-01

    ...)(iii) on February 14, 2013 (78 FR 11790, February 20, 2013). As of February 25, 2013, NMFS has... directed fishing for Pacific cod by catcher vessels (CVs) using trawl gear in the Western Regulatory Area... allowance of the 2013 Pacific cod total allowable catch apportioned to CVs using trawl gear in the...

  9. 77 FR 19564 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-02

    ... established by the final 2012 and 2013 harvest specifications for groundfish of the GOA (77 FR 15194, March 14... for Pacific cod by catcher vessels (CVs) using trawl gear in the Central Regulatory Area of the Gulf... Pacific cod total allowable catch apportioned to CVs using trawl gear in the Central Regulatory Area...

  10. 78 FR 18528 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-27

    ... established by the final 2012 and 2013 harvest specifications for groundfish of the GOA (77 FR 15194, March 14, 2012) and inseason adjustment to the final 2013 harvest specifications for Pacific cod (78 FR 267... for Pacific cod by catcher vessels (CVs) using trawl gear in the Central Regulatory Area of the...

  11. 75 FR 59157 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using Pot...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-27

    ... groundfish in the BSAI (75 FR 11778, March 12, 2010). In accordance with Sec. 679.20(d)(1)(iii), the... Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using Pot Gear in the Bering Sea and Aleutian... for Pacific cod by pot catcher/processors in the Bering Sea and Aleutian Islands management area...

  12. 77 FR 11776 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using Hook...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-28

    ... harvest specifications for groundfish of the GOA (76 FR 11111, March 1, 2011), revision to the final 2012 harvest specifications for Pacific cod (76 FR 81860, December 29, 2011), and inseason adjustment to the final 2012 harvest specifications for Pacific cod (77 FR 438, January 5, 2012). In accordance with...

  13. 77 FR 9589 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-17

    ... GOA (76 FR 11111, March 1, 2011), revision to the final 2012 harvest specifications for Pacific cod (76 FR 81860, December 29, 2011), and inseason adjustment to the final 2012 harvest specifications for Pacific cod (77 FR 438, January 5, 2012). In accordance with Sec. 679.20(d)(1)(i), the...

  14. 76 FR 66195 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using Pot...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-10-26

    ... groundfish in the BSAI (76 FR 11139, March 1, 2011). In accordance with Sec. 679.20(d)(1)(iii), the... Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using Pot Gear in the Bering Sea and Aleutian... for Pacific cod by pot catcher/processors in the Bering Sea and Aleutian Islands management area...

  15. 75 FR 7403 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using Hook...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-19

    ... (74 FR 7359, February 17, 2009) and inseason adjustment (74 FR 68717, December 29, 2009). In... Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using Hook-and-Line Gear in the Bering Sea and... directed fishing for Pacific cod by catcher/processors using hook-and-line gear in the Bering Sea...

  16. 77 FR 21683 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher/processors Using...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-11

    ... GOA (77 FR 15194, March 14, 2012). In accordance with Sec. 679.20(d)(1)(i), the Administrator, Alaska... Economic Zone Off Alaska; Pacific Cod by Catcher/processors Using Trawl Gear in the Central Regulatory Area... directed fishing for Pacific cod by catcher/processors (C/Ps) using trawl gear in the Central...

  17. 77 FR 54837 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-09-06

    ... final 2012 and 2013 harvest specifications for groundfish of the GOA (77 FR 15194, March 14, 2012). In... Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using Trawl Gear in the Western Regulatory Area... directed fishing for Pacific cod by catcher/processors (C/Ps) using trawl gear in the Western...

  18. 78 FR 4346 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-22

    ... GOA (77 FR 15194, March 14, 2012) and inseason adjustment to the final 2013 harvest specifications for Pacific cod (78 FR 267, January 3, 2013). In accordance with Sec. 679.20(d)(1)(i), the Administrator... Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using Trawl Gear in the Western Regulatory...

  19. 78 FR 54592 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-05

    ... final 2013 and 2014 harvest specifications for groundfish of the GOA (78 FR 13162, February 26, 2013... Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using Trawl Gear in the Central Regulatory Area... directed fishing for Pacific cod by catcher/processors (C/Ps) using trawl gear in the Central...

  20. 78 FR 23683 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-04-22

    ... GOA (78 FR 13162, February 26, 2013). In accordance with Sec. 679.20(d)(1)(i), the Administrator... Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using Trawl Gear in the Central Regulatory Area... directed fishing for Pacific cod by catcher/processors (C/Ps) using trawl gear in the Central...

  1. 78 FR 23864 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using Hook...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-04-23

    ... harvest specifications for groundfish of the GOA (78 FR 13162, February 26, 2013). In accordance with Sec... Economic Zone Off Alaska; Pacific Cod by Catcher/Processors Using Hook-and-line Gear in the Western... directed fishing for Pacific cod by catcher/processors (C/Ps) using hook-and-line gear in the...

  2. 77 FR 62464 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Using Pot Gear in the...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-15

    ... specifications for groundfish of the GOA (77 FR 15194, March 14, 2012). In accordance with Sec. 679.20(d)(1)(i... Economic Zone Off Alaska; Pacific Cod by Vessels Using Pot Gear in the Central Regulatory Area of the Gulf... for Pacific cod by vessels using pot gear in the Central Regulatory Area of the Gulf of Alaska...

  3. 75 FR 12463 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-16

    ...NMFS is prohibiting directed fishing for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands management area (BSAI). This action is necessary to prevent exceeding the A season allowance of the 2010 Pacific cod allowable catch (TAC) specified for catcher vessels using trawl gear in the...

  4. 77 FR 23159 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-18

    ... harvest specifications for groundfish in the BSAI (77 FR 10669, February 23, 2012). In accordance with Sec... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands...

  5. 76 FR 20891 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-14

    ...NMFS is opening directed fishing for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands Management Area (BSAI). This action is necessary to fully use the B season allowance of the 2011 total allowable catch (TAC) of Pacific cod allocated to catcher vessels using trawl gear in the...

  6. 76 FR 18663 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-05

    ...NMFS is prohibiting directed fishing for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands management area (BSAI). This action is necessary to prevent exceeding the B season allowance of the 2011 Pacific cod allowable catch (TAC) specified for catcher vessels using trawl gear in the...

  7. 78 FR 10102 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Using Pot Gear in the...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-13

    ... established by the final 2012 and 2013 harvest specifications for groundfish of the GOA (77 FR 15194, March 14, 2012) and inseason adjustment to the final 2013 harvest specifications for Pacific cod (78 FR 267... Economic Zone Off Alaska; Pacific Cod by Vessels Using Pot Gear in the Central Regulatory Area of the...

  8. 75 FR 16359 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-01

    ... harvest specifications for groundfish in the BSAI (75 FR 11788, March 12, 2010). In accordance with Sec... Economic Zone Off Alaska; Pacific Cod by Catcher Vessels Using Trawl Gear in the Bering Sea and Aleutian... for Pacific cod by catcher vessels using trawl gear in the Bering Sea and Aleutian Islands...

  9. 33 CFR 334.60 - Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 3 2010-07-01 2010-07-01 false Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area. 334.60 Section 334.60 Navigation and Navigable Waters... REGULATIONS § 334.60 Cape Cod Bay south of Wellfleet Harbor, Mass.; naval aircraft bombing target area....

  10. Membrane bioreactors fed with different COD/N ratio wastewater: impacts on microbial community, microbial products, and membrane fouling.

    PubMed

    Han, Xiaomeng; Wang, Zhiwei; Ma, Jinxing; Zhu, Chaowei; Li, Yaxin; Wu, Zhichao

    2015-08-01

    It is known that an increase of COD/N ratio can result in an enhanced removal of nutrients in membrane bioreactors (MBRs); however, impacts of doing so on membrane filtration performance remain unclear. In this work, comparison of membrane filtration performance, microbial community, and microbial products under low temperature was carried out in anoxic/oxic (A/O) MBRs with COD/N ratios of 9.9 and 5.5 g COD/g N in influent. There was no doubt that an improvement of nitrogen removal under high COD/N ratio was observed; however, severer membrane fouling was found compared to the MBR fed with low COD/N ratio wastewater. The increase of COD/N ratio resulted in an elevated production of humic acids in soluble microbial product (SMP) and carbohydrates, proteins, and humic acids in loosely bound extracellular polymeric substance (LB-EPS). Quartz crystal microbalance with dissipation monitoring (QCM-D) analysis showed that the adsorption capability of SMP and LB-EPS was higher in the MBR with higher COD/N ratio. Four hundred fifty four high-throughput pyrosequencing revealed that the higher COD/N ratio led to the enrichment of Bacteroidetes at phylum level and Azospira, Thauera, Zoogloea, etc. at genus level. Bacteroidetes are considered to potentially release EPS, and Azospira, Thauera, and Zoogloea, etc. have denitrification activity. The change in microbial communities is consistent with MBR performance. PMID:25813643

  11. 78 FR 7280 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod by Vessels Using Pot Gear in the...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-01

    ... established by the final 2012 and 2013 harvest specifications for groundfish of the GOA (77 FR 15194, March 14, 2012) and inseason adjustment to the final 2013 harvest specifications for Pacific cod (78 FR 267... a timely fashion and would delay the directed fishing closure of Pacific cod for vessels using...

  12. Impact of the herbicide (RS)-MCPP on an anaerobic membrane bioreactor performance under different COD/nitrate ratios.

    PubMed

    Yuzir, Ali; Chelliapan, Shreeshivadasan; Sallis, Paul J

    2012-04-01

    The degradation of (RS)-MCPP was investigated in an anaerobic membrane bioreactor (AnMBR) using nitrate as an available electron acceptor under different COD/NO(3)(-)-N ratios. Results showed high soluble COD removal efficiency (80-93%) when the reactor was operated at high COD/NO(3)(-)-N ratios. However, the COD removal started to decline (average 15%) at high nitrate concentrations coinciding with a drop in nitrate removal efficiency to 37%, suggesting that the denitrification activity dropped and affected the AnMBR performance when nitrate was the predominant electron acceptor. Additionally, the removal efficiency of (RS)-MCPP increased from 2% to 47% with reducing COD/NO(3)(-)-N ratios, whilst the (RS)-MCPP specific utilisation rate (SUR) was inversely proportional to the COD/NO(3)(-)-N ratio, suggesting that a lower COD/NO(3)(-)-N ratios had a positive influence on the (RS)-MCPP SUR. Although nitrate had a major impact on methane production rates, the methane composition was stable (approximately 80%) for COD/NO(3)(-)-N ratios of 23 or more. PMID:22318083

  13. 75 FR 52478 - Fisheries of the Exclusive Economic Zone Off Alaska; Reallocation of Pacific Cod in the Bering...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-08-26

    ... FR 11778, March 12, 2010), for the period 1200 hrs, A.l.t., June 10, 2010, through 1200 hrs, A.l.t... specifications for Pacific cod included in the final harvest specifications for groundfish in the BSAI (75 FR... unused amount of Pacific cod from trawl catcher vessels to catcher vessels less than 60 feet (18.3...

  14. 76 FR 29671 - Fisheries of the Exclusive Economic Zone Off Alaska; Reallocation of Pacific Cod in the Bering...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-05-23

    ... established by the final 2011 and 2012 harvest specifications for groundfish in the BSAI (76 FR 11139, March 1... Pacific cod included in the final 2011 harvest specifications for groundfish in the BSAI (76 FR 11139... unused amount of Pacific cod from vessels using trawl gear to catcher vessels less than 60 feet...

  15. 76 FR 24404 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod in the Bering Sea and Aleutian...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-05-02

    ... pot gear in the BSAI under Sec. 679.20(d)(1)(iii) on March 8, 2011 (76 FR 13098, March 10, 2011). NMFS... cod by catcher vessels less than 60 feet (18.3 meters) length overall (LOA) using hook-and-line or pot... use the 2011 total allowable catch of Pacific cod allocated to catcher vessels less than 60 feet...

  16. 77 FR 55735 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod in the Bering Sea and Aleutian...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-09-11

    ... February 17, 2012 (77 FR 10400, February 22, 2012). NMFS has determined that as of September 5, 2012... cod by catcher vessels less than 60 feet (18.3 meters) length overall (LOA) using hook-and-line or pot... use the 2012 total allowable catch of Pacific cod allocated to catcher vessels less than 60 feet...

  17. The effect of COD loading on the granule-based enhanced biological phosphorus removal system and the recoverability.

    PubMed

    Yu, Shenjing; Sun, Peide; Zheng, Wei; Chen, Lujun; Zheng, Xiongliu; Han, Jingyi; Yan, Tao

    2014-11-01

    In this study, the effect of varied COD loading (200, 400, 500, 600 and 800 mg L(-1)) on stability and recoverability of granule-based enhanced biological phosphorus removal (EBPR) system was investigated during continuously 53-d operation. Results showed that COD loading higher than 500 mg L(-1) could obviously deteriorate the granular EBPR system and result in sludge bulking with filamentous bacteria. High COD loading also changed the transformation patterns of poly-β-hydroxyalkanoates (PHAs) and glycogen in metabolism process of polyphosphate-accumulating organisms (PAOs) and inhibited the EPS secretion, which completely destroyed the stability and integrality of granules. Results of FISH indicated that glycogen-accumulating organisms (GAOs) and other microorganisms had a competitive advantage over PAOs with higher COD loading. The community composition and EBPR performance were recovered irreversibly in long time operation when COD loading was higher than 500 mg L(-1). PMID:25189512

  18. Effect of sludge retention time on continuous-flow system with enhanced biological phosphorus removal granules at different COD loading.

    PubMed

    Li, Dong; Lv, Yufeng; Zeng, Huiping; Zhang, Jie

    2016-11-01

    The effect of sludge retention time (SRT) on the continuous-flow system with enhanced biological phosphorus removal (EBPR) granules at different COD loading was investigated during the operation of more than 220days. And the results showed that when the system operated at long SRT (30days) and low COD loading (200mg·L(-1)), it could maintain excellent performance. However, long SRT and high COD loading (300mg·L(-1)) deteriorated the settling ability of granules and the performance of system and resulted in the overgrowth of filamentous bacteria. Meanwhile, the transformation of poly-β-hydroxyalkanoates (PHAs) and glycogen in metabolism process was inhibited. Moreover, the results of pyrosequencing indicated that filamentous bacteria had a competitive advantage over polyphosphate-accumulating organisms (PAOs) at high COD loading and long SRT. The PAOs specious of Candidatus_Accumlibater and system performance increased obviously when the SRT was reduced to 20days at high COD loading. PMID:27472749

  19. Three chromosomal rearrangements promote genomic divergence between migratory and stationary ecotypes of Atlantic cod.

    PubMed

    Berg, Paul R; Star, Bastiaan; Pampoulie, Christophe; Sodeland, Marte; Barth, Julia M I; Knutsen, Halvor; Jakobsen, Kjetill S; Jentoft, Sissel

    2016-01-01

    Identification of genome-wide patterns of divergence provides insight on how genomes are influenced by selection and can reveal the potential for local adaptation in spatially structured populations. In Atlantic cod - historically a major marine resource - Northeast-Arctic- and Norwegian coastal cod are recognized by fundamental differences in migratory and non-migratory behavior, respectively. However, the genomic architecture underlying such behavioral ecotypes is unclear. Here, we have analyzed more than 8.000 polymorphic SNPs distributed throughout all 23 linkage groups and show that loci putatively under selection are localized within three distinct genomic regions, each of several megabases long, covering approximately 4% of the Atlantic cod genome. These regions likely represent genomic inversions. The frequency of these distinct regions differ markedly between the ecotypes, spawning in the vicinity of each other, which contrasts with the low level of divergence in the rest of the genome. The observed patterns strongly suggest that these chromosomal rearrangements are instrumental in local adaptation and separation of Atlantic cod populations, leaving footprints of large genomic regions under selection. Our findings demonstrate the power of using genomic information in further understanding the population dynamics and defining management units in one of the world's most economically important marine resources. PMID:26983361

  20. Effects of Loma morhua (Microsporidia) infection on the cardiorespiratory performance of Atlantic cod Gadus morhua (L).

    PubMed

    Powell, M D; Gamperl, A K

    2016-02-01

    The microsporidian Loma morhua infects Atlantic cod (Gadus morhua) in the wild and in culture and results in the formation of xenomas within the gill filaments, heart and spleen. Given the importance of the two former organs to metabolic capacity and thermal tolerance, the cardiorespiratory performance of cod with a naturally acquired infection of Loma was measured during an acute temperature increase (2 °C h(-1) ) from 10 °C to the fish's critical thermal maximum (CTMax ). In addition, oxygen consumption and swimming performance were measured during two successive critical swimming speed (Ucrit ) tests at 10 °C. While Loma infection had a negative impact on cod cardiac function at warm temperatures, and on metabolic capacity in both the CTMax and Ucrit tests (i.e. a reduction of 30-40%), it appears that the Atlantic cod can largely compensate for these Loma-induced cardiorespiratory limitations. For example, (i) CTMax (21.0 ± 0.3 °C) and Ucrit (~1.75 BL s(-1) ) were very comparable to those reported in previous studies using uninfected fish from the same founder population; and (ii) our data suggest that tissue oxygen extraction, and potentially the capacity for anaerobic metabolism, is enhanced in fish infected with this microsporidian. PMID:25683657

  1. Acoustically induced streaming flows near a model cod otolith and their potential implications for fish hearing.

    PubMed

    Kotas, Charlotte W; Rogers, Peter H; Yoda, Minami

    2011-08-01

    The ears of fishes are remarkable sensors for the small acoustic disturbances associated with underwater sound. For example, each ear of the Atlantic cod (Gadus morhua) has three dense bony bodies (otoliths) surrounded by fluid and tissue, and detects sounds at frequencies from 30 to 500 Hz. Atlantic cod have also been shown to localize sounds. However, how their ears perform these functions is not fully understood. Steady streaming, or time-independent, flows near a 350% scale model Atlantic cod otolith immersed in a viscous fluid were studied to determine if these fluid flows contain acoustically relevant information that could be detected by the ear's sensory hair cells. The otolith was oscillated sinusoidally at various orientations at frequencies of 8-24 Hz, corresponding to an actual frequency range of 280-830 Hz. Phase-locked particle pathline visualizations of the resulting flows give velocity, vorticity, and rate of strain fields over a single plane of this mainly two-dimensional flow. Although the streaming flows contain acoustically relevant information, the displacements due to these flows are likely too small to explain Atlantic cod hearing abilities near threshold. The results, however, may suggest a possible mechanism for detection of ultrasound in some fish species. PMID:21877817

  2. Laboratory rearing of wild Arctic cod Boreogadus saida from egg to adulthood.

    PubMed

    Kent, D; Drost, H E; Fisher, J; Oyama, T; Farrell, A P

    2016-03-01

    The techniques and protocols used to successfully capture, transport and breed Arctic cod Boreogadus saida, as well as to rear their larvae through to adulthood are summarized. Breeding B. saida will increase the opportunity to study this fish species, which is a critical part of the Arctic food web. PMID:26832071

  3. Predation rates by North Sea cod (Gadus morhua) - Predictions from models on gastric evacuation and bioenergetics

    USGS Publications Warehouse

    Hansson, S.; Rudstam, L. G.; Kitchell, J.F.; Hilden, M.; Johnson, B.L.; Peppard, P.E.

    1996-01-01

    We compared four different methods for estimating predation rates by North Sea cod (Gadus moi hua). Three estimates, based on gastric evacuation rates, came from an ICES multispecies working group and the fourth from a bioenergetics model. The bioenergetics model was developed from a review of literature on cod physiology. The three gastric evacuation rate models produced very different prey consumption estimates for small (2 kg) fish. For most size and age classes, the bioenergetics model predicted food consumption rates intermediate to those predicted by the gastric evacuation models. Using the standard ICES model and the average population abundance and age structure for 1974-1989, annual, prey consumption by the North Sea cod population (age greater than or equal to 1) was 840 kilotons. The other two evacuation rate models produced estimates of 1020 and 1640 kilotons, respectively. The bioenergetics model estimate was 1420 kilotons. The major differences between models were due to consumption rate estimates for younger age groups of cod. (C) 1996 International Council for the Exploration of the Sea

  4. COD and color removal of reactive orange 16 dye solution by electrochemical oxidation and adsorption method

    NASA Astrophysics Data System (ADS)

    Zakaria, Zuhailie; Ahmad, Wan Yaacob Wan; Yusop, Muhammad Rahimi; Othman, Mohamed Rozali

    2015-09-01

    Degradation of Reactive Orange 16 (RO16) dye was investigated using electrochemical oxidation and adsorption (batch method) using mixture of coconut trunk charcoal-graphite-tin-polyvinyl chloride(PVC). In batch studies for adsorbents pellet and powder form of the charcoal mixture were used. RO16 was chosen as the model dye because of its high resistance towards conventional treatment methods. NaCl and RO16 concentration, treatment duration, weight of electrode and adsorbent and volume of solution were kept constant for both methods. The effectiveness of the treatments were compared and evaluated by percentage of RO16 decolorization and chemical oxygen demand (COD) removal and results indicated that electrochemical oxidation method ables to decolorized RO16 dye up to 98.5% after 20 minutes electrolysis time while pellet and powder in batch method only removed 17.1 and 33.6% of RO16 color respectively. However, only 45.6% of COD can be removed using electrochemical oxidation method while pellet and powder in batch method removed 47.8 and 49.6% of COD respectively. The decolorization and COD removal of RO16 was determined using UV-Vis spectrophotometer (by the changes of absorption spectrum intensity of azo chromophore (-N=N-) at λ=388 and 492.50 nm and Hach spectrophotometer respectively. FTIR was used to determine functional groups present in the coconut trunk charcoal.

  5. Clinical diversity and chromosomal localization of X-linked cone dystrophy (COD1).

    PubMed Central

    Hong, H. K.; Ferrell, R. E.; Gorin, M. B.

    1994-01-01

    X-linked progressive cone dystrophy (COD1) causes progressive deterioration of visual acuity, deepening of central scotomas, macular changes, and bull's-eye lesions. The cone electroretinography (ERG) is variably abnormal in affected males, and the rod ERG may also be abnormal. The clinical picture of heterozygous females ranges from asymptomatic to a widespread spectrum of cone-mediated dysfunction. A prior linkage study demonstrated linkage between the COD1 locus and the marker locus DXS84, assigned to Xp21.1, with no recombination. In the present study, we have clinically characterized a large four-generation family with COD1 and have performed a linkage analysis using seven polymorphic markers on the short arm of the X chromosome. No recombination was observed between the disease and the marker loci DXS7 and MAOA, suggesting that the location of COD1 is in the region Xp11.3, distal to DXS84 and proximal to ARAF1. Images Figure 2 PMID:7977377

  6. Three chromosomal rearrangements promote genomic divergence between migratory and stationary ecotypes of Atlantic cod

    PubMed Central

    Berg, Paul R.; Star, Bastiaan; Pampoulie, Christophe; Sodeland, Marte; Barth, Julia M. I.; Knutsen, Halvor; Jakobsen, Kjetill S.; Jentoft, Sissel

    2016-01-01

    Identification of genome-wide patterns of divergence provides insight on how genomes are influenced by selection and can reveal the potential for local adaptation in spatially structured populations. In Atlantic cod – historically a major marine resource – Northeast-Arctic- and Norwegian coastal cod are recognized by fundamental differences in migratory and non-migratory behavior, respectively. However, the genomic architecture underlying such behavioral ecotypes is unclear. Here, we have analyzed more than 8.000 polymorphic SNPs distributed throughout all 23 linkage groups and show that loci putatively under selection are localized within three distinct genomic regions, each of several megabases long, covering approximately 4% of the Atlantic cod genome. These regions likely represent genomic inversions. The frequency of these distinct regions differ markedly between the ecotypes, spawning in the vicinity of each other, which contrasts with the low level of divergence in the rest of the genome. The observed patterns strongly suggest that these chromosomal rearrangements are instrumental in local adaptation and separation of Atlantic cod populations, leaving footprints of large genomic regions under selection. Our findings demonstrate the power of using genomic information in further understanding the population dynamics and defining management units in one of the world’s most economically important marine resources. PMID:26983361

  7. An obstacle to China's WWTPs: the COD and BOD standards for discharge into municipal sewers.

    PubMed

    Liao, Zhenliang; Hu, Tiantian; Roker, Scott Albert C

    2015-11-01

    In 2001, a construction campaign regarding wastewater treatment plants (WWTPs) occurred in China. Unfortunately, the treatment has not yet achieved anticipated effectiveness. A critical reason for this is that the influent chemical oxygen demand (COD) and biochemical oxygen demand (BOD) concentrations in WWTPs are unacceptably low. This paper indicates that a fundamental, but commonly overlooked contributing factor to this problem is that a large portion of easily degradable COD and BOD is degraded prematurely before entering municipal sewers, and this is directly correlated to China's standards for pollutant discharging into municipal sewers. This perspective is further unfolded through retrospection of the history of Chinese wastewater treatment and the investigation of standards among developed zones and districts. This paper suggests that in China, the standards for pollutant discharging into municipal sewers should be relaxed. Meanwhile, unnecessary pretreatment of COD and BOD should cease for the purpose of ensuring that easily degradable COD and BOD can be transferred to WWTPs to improve treatment efficiency. Moreover, additional alternatives are presented to resolve this problem. PMID:26341334

  8. Acoustically Induced Streaming Flows near a Model Cod Otolith and their Potential Implications for Fish Hearing

    SciTech Connect

    Kotas, Charlotte W; Rogers, Peter; Yoda, Minami

    2011-01-01

    The ears of fishes are remarkable sensors for the small acoustic disturbances associated with underwater sound. For example, each ear of the Atlantic cod (Gadus morhua) has three dense bony bodies (otoliths) surrounded by fluid and tissue, and detects sounds at frequencies from 30 to 500 Hz. Atlantic cod have also been shown to localize sounds. However, how their ears perform these functions is not fully understood. Steady streaming, or time-independent, flows near a 350% scale model Atlantic cod otolith immersed in a viscous fluid were studied to determine if these fluid flows contain acoustically relevant information that could be detected by the ear s sensory hair cells. The otolith was oscillated sinusoidally at various orientations at frequencies of 8 24 Hz, corresponding to an actual frequency range of 280 830 Hz. Phaselocked particle pathline visualizations of the resulting flows give velocity, vorticity, and rate of strain fields over a single plane of this mainly two-dimensional flow. Although the streaming flows contain acoustically relevant information, the displacements due to these flows are likely too small to explain Atlantic cod hearing abilities near threshold. The results, however, may suggest a possible mechanism for detection of ultrasound in some fish species.

  9. 50 CFR Table 5 to Part 679 - Steller Sea Lion Protection Areas Pacific Cod Fisheries Restrictions

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 50 Wildlife and Fisheries 13 2013-10-01 2013-10-01 false Steller Sea Lion Protection Areas Pacific Cod Fisheries Restrictions 5 Table 5 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND MANAGEMENT, NATIONAL OCEANIC AND ATMOSPHERIC ADMINISTRATION, DEPARTMENT OF COMMERCE (CONTINUED) FISHERIES OF THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA...

  10. 50 CFR Table 5 to Part 679 - Steller Sea Lion Protection Areas Pacific Cod Fisheries Restrictions

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Steller Sea Lion Protection Areas Pacific Cod Fisheries Restrictions 5 Table 5 to Part 679 Wildlife and Fisheries FISHERY CONSERVATION AND... THE EXCLUSIVE ECONOMIC ZONE OFF ALASKA Pt. 679, Table 5 Table 5 to Part 679—Steller Sea...

  11. Aromatic amine degradation in a UASB/CSTR sequential system treating Congo Red dye.

    PubMed

    Işik, Mustafa; Sponza, Delia Teresa

    2003-01-01

    In this study an anaerobic (upflow anaerobic sludge blanket reactor)/aerobic (completely stirred tank reactor) sequential system was used to treat a synthetic wastewater with minerals and co-substrate together with 100-4000 mg L(-1) of Congo Red dye (Direct red 28) (CR), which is a banned azo dye in Turkey. The effect of hydraulic retention time (HRT) on the decolorization and the COD removal efficiency was investigated at constant 100 mg L(-1) Congo Red concentration. 77% of COD and 95% of color was removed at a HRT of 0.486 days and a maximum organic loading rate of 6.656 kg COD m(-3) day(-1) in the anaerobic/aerobic stage. In the continuous operations, 88% of COD, 99% of color and 91% of total aromatic amine (TAA) were removed at a HRT of 3.60 days and at a CR concentration of 4000 mg L(-1). This corresponds to an organic loading rate of 1.81 kg COD m(-3) day(-1), and a CR dye loading rate of 46.37 g dye m(-3) h(-1), respectively, in the whole system. The TAA produced under anaerobic conditions was ultimately removed in the aerobic stage, resulting in very low aromatic amine recoveries (5-18%) in the last one. Therefore the aerobic effluents exhibited higher IC50 and specific methanogenic activities (SMA) compared to anaerobic and dye containing samples, indicating the reduced toxicity. PMID:14524683

  12. Methane Production from Rice Straw Hydrolysate Treated with Dilute Acid by Anaerobic Granular Sludge.

    PubMed

    Cheng, Jing-Rong; Liu, Xue-Ming; Chen, Zhi-Yi

    2016-01-01

    The traditional anaerobic digestion process of straw to biogas faces bottlenecks of long anaerobic digestion time, low digestion rate, less gas production, etc., while straw hydrolysate has the potential to overcome these drawbacks. In this study, the dilute sulphuric acid-treated hydrolysate of rice straw (DSARSH) containing high sulfate was firstly proved to be a feasible substrate for methane production under mesophilic digestion by granular sludge within a short digestion time. Batch anaerobic digestion process was operated under different initial chemical oxygen demand (COD) values at temperature of 37 °C with the pH of 8.5. Among the initial COD values ranging from 3000 to 11,000 mg/L, 5000 mg/L was proved to be the most appropriate considering high COD removal efficiency (94.17 ± 1.67 %), CH4 content (65.52 ± 3.12 %), and CH4 yield (0.346 ± 0.008 LCH4/g COD removed) within 120 h. Furthermore, when the studied system operated at the initial COD of 5000 mg/L, the sulfate removal ratio could reach 56.28 %. PMID:26378012

  13. Applicability of high rate transpiration system for treatment of biologically treated distillery effluent.

    PubMed

    Singh, S K; Juwarkar, Asha A; Pandey, R A; Chakrabarti, T

    2008-06-01

    The biologically treated distillery effluent (BTDE) contains intense colour, high total dissolved solids (TDS), chemical oxygen demand (COD) and biochemical oxygen demand (BOD). These properties even after primary, secondary and tertiary treatments contain high concentrations of TDS, COD and BOD. The paper highlights the safe disposal and treatment of BTDE on land through High Rate Transpiration System (HRTS). HRTS is a zero discharge, low cost, high-tech method for improving the quality of BTDE for potential reuse. The experiments conducted at bench and pilot scale showed that HRTS having coconut husk as a bedding material could successfully treat the BTDE with a hydraulic load of 200 m3 ha(-1) day(-1) having BOD of 100 mg l(-1) and 500 m3 ha(-1) day(-1) having BOD of 500 mg l(-1) with average COD load of 0.686 and 2.88 ton ha(-1) day(-1) during the post and pre monsoon periods respectively. There was no significant increase in the organic carbon of the soil irrigated with BTDE. The concentrations of various pollutants analyzed in the leachate were within the prescribed limit for the drinking water sources. The colour removal was 99 to 100% and BOD and COD were possible to treat with optimum hydraulic loading of BTDE through HRTS planted with Dendrocalamus strictus. PMID:17882528

  14. Analysis of homogeneous/non-homogeneous nanofluid models accounting for nanofluid-surface interactions

    NASA Astrophysics Data System (ADS)

    Ahmad, R.

    2016-07-01

    This article reports an unbiased analysis for the water based rod shaped alumina nanoparticles by considering both the homogeneous and non-homogeneous nanofluid models over the coupled nanofluid-surface interface. The mechanics of the surface are found for both the homogeneous and non-homogeneous models, which were ignored in previous studies. The viscosity and thermal conductivity data are implemented from the international nanofluid property benchmark exercise. All the simulations are being done by using the experimentally verified results. By considering the homogeneous and non-homogeneous models, the precise movement of the alumina nanoparticles over the surface has been observed by solving the corresponding system of differential equations. For the non-homogeneous model, a uniform temperature and nanofluid volume fraction are assumed at the surface, and the flux of the alumina nanoparticle is taken as zero. The assumption of zero nanoparticle flux at the surface makes the non-homogeneous model physically more realistic. The differences of all profiles for both the homogeneous and nonhomogeneous models are insignificant, and this is due to small deviations in the values of the Brownian motion and thermophoresis parameters.

  15. Multi-phased anaerobic baffled reactor treating food waste.

    PubMed

    Ahamed, A; Chen, C-L; Rajagopal, R; Wu, D; Mao, Y; Ho, I J R; Lim, J W; Wang, J-Y

    2015-04-01

    This study was conducted to identify the performance of a multi-phased anaerobic baffled reactor (MP-ABR) with food waste (FW) as the substrate for biogas production and thereby to promote an efficient energy recovery and treatment method for the wastes with high organic solid content through phase separation. A four-chambered ABR was operated at an HRT of 30 days with an OLR of 0.5-1.0 g-VS/Ld for a period of 175 days at 35 ± 1°C. Consistent overall removal efficiencies of 85.3% (CODt), 94.5% (CODs), 89.6% (VFA) and 86.4% (VS) were observed throughout the experiment displaying a great potential to treat FW. Biogas generated was 215.57 mL/g-VS removed d. Phase separation was observed and supported by the COD and VFA trends, and an efficient recovery of bioenergy from FW was achieved. PMID:25704096

  16. Characterization of Atlantic cod spawning habitat and behavior in Icelandic coastal waters

    USGS Publications Warehouse

    Grabowski, Timothy B.; Boswell, Kevin M.; McAdam, Bruce J.; Wells, R. J. David; Marteinsdóttir, Gudrún

    2012-01-01

    The physical habitat used during spawning may potentially be an important factor affecting reproductive output of broadcast spawning marine fishes, particularly for species with complex, substrate-oriented mating systems and behaviors, such as Atlantic cod Gadus morhua. We characterized the habitat use and behavior of spawning Atlantic cod at two locations off the coast of southwestern Iceland during a 2-d research cruise (15–16 April 2009). We simultaneously operated two different active hydroacoustic gear types, a split beam echosounder and a dual frequency imaging sonar (DIDSON), as well as a remotely operated underwater vehicle (ROV). A total of five fish species were identified through ROV surveys: including cusk Brosme brosme, Atlantic cod, haddock Melanogrammus aeglefinus, lemon sole Microstomus kitt, and Atlantic redfish Sebastes spp. Of the three habitats identified in the acoustic surveys, the transitional habitat between boulder/lava field and sand habitats was characterized by greater fish density and acoustic target strength compared to that of sand or boulder/lava field habitats independently. Atlantic cod were observed behaving in a manner consistent with published descriptions of spawning. Individuals were observed ascending 1–5 m into the water column from the bottom at an average vertical swimming speed of 0.20–0.25 m s−1 and maintained an average spacing of 1.0–1.4 m between individuals. Our results suggest that cod do not choose spawning locations indiscriminately despite the fact that it is a broadcast spawning fish with planktonic eggs that are released well above the seafloor.

  17. Photoperiod Influences Growth and mll (Mixed-Lineage Leukaemia) Expression in Atlantic Cod

    PubMed Central

    Nagasawa, Kazue; Giannetto, Alessia; Fernandes, Jorge M. O.

    2012-01-01

    Photoperiod is associated to phenotypic plasticity of somatic growth in several teleost species. However, the molecular mechanisms underlying this phenomenon are currently unknown but it is likely that epigenetic regulation by methyltransferases is involved. The MLL (mixed-lineage leukaemia) family comprises histone methyltransferases that play a critical role in regulating gene expression during early development in mammals. So far, these genes have received scant attention in teleost fish. In the present study, the mean weight of Atlantic cod juveniles reared under continuous illumination was found to be 13% greater than those kept under natural photoperiod conditions for 120 days. We newly determined cDNA sequences of five mll (mll1, mll2, mll3a, mll4b and mll5) and two setd1 (setd1a and setd1ba) paralogues from Atlantic cod. Phylogenetic analysis revealed that the cod genes clustered within the appropriate mll clade and comparative mapping of mll paralogues showed that these genes lie within a region of conserved synteny among teleosts. All mll and setd1 genes were highly expressed in gonads and fast muscle of adult cod, albeit at different levels, and they were differentially regulated with photoperiod in muscle of juvenile fish. Following only one day of exposure to constant light, mll1, mll4b and setd1a were up to 57% lower in these fish compared to the natural photoperiod group. In addition, mRNA expression of myogenic regulatory factors (myog and myf-5) and pax7 in fast muscle was also affected by different photoperiod conditions. Notably, myog was significantly elevated in the continuous illumination group throughout the time course of the experiment. The absence of a day/night cycle is associated with a generalised decrease in mll expression concomitant with an increase in myog transcript levels in fast muscle of Atlantic cod, which may be involved in the observed epigenetic regulation of growth by photoperiod in this species. PMID:22590633

  18. Daily Rhythmicity of Clock Gene Transcripts in Atlantic Cod Fast Skeletal Muscle

    PubMed Central

    Lazado, Carlo C.; Kumaratunga, Hiruni P. S.; Nagasawa, Kazue; Babiak, Igor; Giannetto, Alessia; Fernandes, Jorge M. O.

    2014-01-01

    The classical notion of a centralized clock that governs circadian rhythmicity has been challenged with the discovery of peripheral oscillators that enable organisms to cope with daily changes in their environment. The present study aimed to identify the molecular clock components in Atlantic cod (Gadus morhua) and to investigate their daily gene expression in fast skeletal muscle. Atlantic cod clock genes were closely related to their orthologs in teleosts and tetrapods. Synteny was conserved to varying degrees in the majority of the 18 clock genes examined. In particular, aryl hydrocarbon receptor nuclear translocator-like 2 (arntl2), RAR-related orphan receptor A (rora) and timeless (tim) displayed high degrees of conservation. Expression profiling during the early ontogenesis revealed that some transcripts were maternally transferred, namely arntl2, cryptochrome 1b and 2 (cry1b and cry2), and period 2a and 2b (per2a and per2b). Most clock genes were ubiquitously expressed in various tissues, suggesting the possible existence of multiple peripheral clock systems in Atlantic cod. In particular, they were all detected in fast skeletal muscle, with the exception of neuronal PAS (Per-Arnt-Single-minded) domain-containing protein (npas1) and rora. Rhythmicity analysis revealed 8 clock genes with daily rhythmic expression, namely arntl2, circadian locomotor output cycles kaput (clock), npas2, cry2, cry3 per2a, nuclear receptor subfamily 1, group D, member 1 (nr1d1), and nr1d2a. Transcript levels of the myogenic genes myogenic factor 5 (myf5) and muscleblind-like 1 (mbnl1) strongly correlated with clock gene expression. This is the first study to unravel the molecular components of peripheral clocks in Atlantic cod. Taken together, our data suggest that the putative clock system in fast skeletal muscle of Atlantic cod has regulatory implications on muscle physiology, particularly in the expression of genes related to myogenesis. PMID:24921252

  19. A Novel Beta-Defensin Antimicrobial Peptide in Atlantic Cod with Stimulatory Effect on Phagocytic Activity

    PubMed Central

    Ruangsri, Jareeporn; Kitani, Yoichiro; Kiron, Viswanath; Lokesh, Jep; Brinchmann, Monica F.; Karlsen, Bård Ove; Fernandes, Jorge M. O.

    2013-01-01

    A novel defensin antimicrobial peptide gene was identified in Atlantic cod, Gadus morhua. This three exon/two intron defensin gene codes for a peptide precursor consisting of two domains: a signal peptide of 26 amino acids and a mature peptide of 40 residues. The mature cod defensin has six conserved cysteine residues that form 1–5, 2–4 and 3–6 disulphide bridges. This pattern is typical of beta-defensins and this gene was therefore named cod beta-defensin (defb). The tertiary structure of Defb exhibits an α/β fold with one α helix and β1β2β3 sheets. RT-PCR analysis indicated that defb transcripts were present mainly in the swim bladder and peritoneum wall but could also be detected at moderate to low levels in skin, head- and excretory kidneys. In situ hybridisation revealed that defb was specifically expressed by cells located in the swim bladder submucosa and the oocytes. During embryonic development, defb gene transcripts were detectable from the golden eye stage onwards and their expression was restricted to the swim bladder and retina. Defb was differentially expressed in several tissues following antigenic challenge with Vibrio anguillarum, being up-regulated up to 25-fold in head kidney. Recombinant Defb displayed antibacterial activity, with a minimal inhibitory concentration of 0.4–0.8 µM and 25–50 µM against the Gram-(+) bacteria Planococcus citreus and Micrococcus luteus, respectively. In addition, Defb stimulated phagocytic activity of cod head kidney leucocytes in vitro. These findings imply that beta-defensins may play an important role in the innate immune response of Atlantic cod. PMID:23638029

  20. Characterization of Atlantic cod spawning habitat and behavior in Icelandic coastal waters.

    PubMed

    Grabowski, Timothy B; Boswell, Kevin M; McAdam, Bruce J; Wells, R J David; Marteinsdóttir, Guđrún

    2012-01-01

    The physical habitat used during spawning may potentially be an important factor affecting reproductive output of broadcast spawning marine fishes, particularly for species with complex, substrate-oriented mating systems and behaviors, such as Atlantic cod Gadus morhua. We characterized the habitat use and behavior of spawning Atlantic cod at two locations off the coast of southwestern Iceland during a 2-d research cruise (15-16 April 2009). We simultaneously operated two different active hydroacoustic gear types, a split beam echosounder and a dual frequency imaging sonar (DIDSON), as well as a remotely operated underwater vehicle (ROV). A total of five fish species were identified through ROV surveys: including cusk Brosme brosme, Atlantic cod, haddock Melanogrammus aeglefinus, lemon sole Microstomus kitt, and Atlantic redfish Sebastes spp. Of the three habitats identified in the acoustic surveys, the transitional habitat between boulder/lava field and sand habitats was characterized by greater fish density and acoustic target strength compared to that of sand or boulder/lava field habitats independently. Atlantic cod were observed behaving in a manner consistent with published descriptions of spawning. Individuals were observed ascending 1-5 m into the water column from the bottom at an average vertical swimming speed of 0.20-0.25 m s(-1) and maintained an average spacing of 1.0-1.4 m between individuals. Our results suggest that cod do not choose spawning locations indiscriminately despite the fact that it is a broadcast spawning fish with planktonic eggs that are released well above the seafloor. PMID:23236471

  1. Nitrogen removal from on-site treated anaerobic effluents using intermittently aerated moving bed biofilm reactors at low temperature.

    PubMed

    Luostarinen, Sari; Luste, Sami; Valentín, Lara; Rintala, Jukka

    2006-05-01

    On-site post-treatment of anaerobically pre-treated dairy parlour wastewater (DPWWe; 10 degrees C) and mixture of kitchen waste and black water (BWKWe; 20 degrees C) was studied in moving bed biofilm reactors (MBBR). The focus was on removal of nitrogen and of residual chemical oxygen demand (COD). Moreover, the effect of intermittent aeration and continuous vs. sequencing batch operation was studied. All MBBRs removed 50-60% of nitrogen and 40-70% of total COD (CODt). Complete nitrification was achieved, but denitrification was restricted by lack of carbon. Nitrogen removal was achieved in a single reactor by applying intermittent aeration. Continuous and sequencing batch operation provided similar nitrogen and COD removal, wherefore simpler continuous feeding may be preferred for on-site applications. Combination of pre-treating upflow anaerobic sludge blanket (UASB) -septic tank and MBBR removed over 92% of CODt, 99% of biological oxygen demand (BOD7), and 65-70% of nitrogen. PMID:16647521

  2. Co-Inactivation of GlnR and CodY Regulators Impacts Pneumococcal Cell Wall Physiology

    PubMed Central

    Johnston, Calum; Bootsma, Hester J.; Aldridge, Christine; Manuse, Sylvie; Gisch, Nicolas; Schwudke, Dominik; Hermans, Peter W. M.; Grangeasse, Christophe; Polard, Patrice; Vollmer, Waldemar; Claverys, Jean-Pierre

    2015-01-01

    CodY, a nutritional regulator highly conserved in low G+C Gram-positive bacteria, is essential in Streptococcus pneumoniae (the pneumococcus). A published codY mutant possessed suppressing mutations inactivating the fatC and amiC genes, respectively belonging to iron (Fat/Fec) and oligopeptide (Ami) ABC permease operons, which are directly repressed by CodY. Here we analyzed two additional published codY mutants to further explore the essentiality of CodY. We show that one, in which the regulator of glutamine/glutamate metabolism glnR had been inactivated by design, had only a suppressor in fecE (a gene in the fat/fec operon), while the other possessed both fecE and amiC mutations. Independent isolation of three different fat/fec suppressors thus establishes that reduction of iron import is crucial for survival without CodY. We refer to these as primary suppressors, while inactivation of ami, which is not essential for survival of codY mutants and acquired after initial fat/fec inactivation, can be regarded as a secondary suppressor. The availability of codY- ami+ cells allowed us to establish that CodY activates competence for genetic transformation indirectly, presumably by repressing ami which is known to antagonize competence. The glnR codY fecE mutant was then found to be only partially viable on solid medium and hypersensitive to peptidoglycan (PG) targeting agents such as the antibiotic cefotaxime and the muramidase lysozyme. While analysis of PG and teichoic acid composition uncovered no alteration in the glnR codY fecE mutant compared to wildtype, electron microscopy revealed altered ultrastructure of the cell wall in the mutant, establishing that co-inactivation of GlnR and CodY regulators impacts pneumococcal cell wall physiology. In light of rising levels of resistance to PG-targeting antibiotics of natural pneumococcal isolates, GlnR and CodY constitute potential alternative therapeutic targets to combat this debilitating pathogen, as co

  3. Homogenization of Periodic Systems with Large Potentials

    NASA Astrophysics Data System (ADS)

    Allaire, Grégoire; Capdeboscq, Yves; Piatnitski, Andrey; Siess, Vincent; Vanninathan, M.

    2004-11-01

    We consider the homogenization of a system of second-order equations with a large potential in a periodic medium. Denoting by ɛ the period, the potential is scaled as ɛ-2. Under a generic assumption on the spectral properties of the associated cell problem, we prove that the solution can be approximately factorized as the product of a fast oscillating cell eigenfunction and of a slowly varying solution of a scalar second-order equation. This result applies to various types of equations such as parabolic, hyperbolic or eigenvalue problems, as well as fourth-order plate equation. We also prove that, for well-prepared initial data concentrating at the bottom of a Bloch band, the resulting homogenized tensor depends on the chosen Bloch band. Our method is based on a combination of classical homogenization techniques (two-scale convergence and suitable oscillating test functions) and of Bloch waves decomposition.

  4. Rapid biotic homogenization of marine fish assemblages.

    PubMed

    Magurran, Anne E; Dornelas, Maria; Moyes, Faye; Gotelli, Nicholas J; McGill, Brian

    2015-01-01

    The role human activities play in reshaping biodiversity is increasingly apparent in terrestrial ecosystems. However, the responses of entire marine assemblages are not well-understood, in part, because few monitoring programs incorporate both spatial and temporal replication. Here, we analyse an exceptionally comprehensive 29-year time series of North Atlantic groundfish assemblages monitored over 5° latitude to the west of Scotland. These fish assemblages show no systematic change in species richness through time, but steady change in species composition, leading to an increase in spatial homogenization: the species identity of colder northern localities increasingly resembles that of warmer southern localities. This biotic homogenization mirrors the spatial pattern of unevenly rising ocean temperatures over the same time period suggesting that climate change is primarily responsible for the spatial homogenization we observe. In this and other ecosystems, apparent constancy in species richness may mask major changes in species composition driven by anthropogenic change. PMID:26400102

  5. Method of Mapping Anomalies in Homogenous Material

    NASA Technical Reports Server (NTRS)

    Woodard, Stanley E. (Inventor); Taylor, Bryant D. (Inventor)

    2016-01-01

    An electrical conductor and antenna are positioned in a fixed relationship to one another. Relative lateral movement is generated between the electrical conductor and a homogenous material while maintaining the electrical conductor at a fixed distance from the homogenous material. The antenna supplies a time-varying magnetic field that causes the electrical conductor to resonate and generate harmonic electric and magnetic field responses. Disruptions in at least one of the electric and magnetic field responses during this lateral movement are indicative of a lateral location of a subsurface anomaly. Next, relative out-of-plane movement is generated between the electrical conductor and the homogenous material in the vicinity of the anomaly's lateral location. Disruptions in at least one of the electric and magnetic field responses during this out-of-plane movement are indicative of a depth location of the subsurface anomaly. A recording of the disruptions provides a mapping of the anomaly.

  6. Application of novel consortium TSR for treatment of industrial dye manufacturing effluent with concurrent removal of ADMI, COD, heavy metals and toxicity.

    PubMed

    Patel, Tallika L; Patel, Bhargav C; Kadam, Avinash A; Tipre, Devayani R; Dave, Shailesh R

    2015-01-01

    The present study was aimed towards the effective bio-treatment of actual industrial effluent containing as high as 42,000 mg/L COD (chemical oxygen demand), >28,000 ADMI (American Dye Manufacturers Institute) color value and four heavy metals using indigenous developed bacterial consortium TSR. Mineral salt medium supplemented with as low as 0.02% (w/v) yeast extract and glucose was found to remove 70% ADMI, 69% COD and >99% sorption of heavy metals in 24 h from the effluent by consortium TSR. The biodegradation of effluent was monitored by UV-vis light, HPLC (high performance liquid chromatography), HPTLC (high performance thin layer chromotography) and FTIR (Fourier transform infrared spectroscopy) and showed significant differences in spectra of untreated and treated effluent, confirming degradation of the effluent. Induction of intracellular azoreductase (107%) and NADH-DCIP reductase (128%) in addition to extracellular laccase (489%) indicates the vital role of the consortium TSR in the degradation process. Toxicity study of the effluent using Allium cepa by single cell gel electrophoresis showed detoxification of the effluent. Ninety per cent germination of plant seeds, Triticum aestivum and Phaseolus mungo, was achieved after treatment by consortium TSR in contrast to only 20% and 30% germination of the respective plants in case of untreated effluent. PMID:25945844

  7. Comparative protective effects of royal jelly and cod liver oil against neurotoxic impact of tartrazine on male rat pups brain.

    PubMed

    Mohamed, Amany Abdel-Rahman; Galal, Azza A A; Elewa, Yaser H A

    2015-09-01

    This study is aimed to evaluate the possible neurotoxic effect of tartrazine (T), an extensively used synthetic azo dye, as well as to determine the potential modulatory role of cod liver oil (CLO) or royal jelly (RJ) against such effects. For this purpose, thirty-six male rat pups were allocated into six groups. The 1st group received distilled water (control group), the 2nd group was given 300 mg RJ/kg bw (RJ group), the 3rd group was given 0.4 ml CLO/kg bw (CLO group), the 4th was given 500 mg T/kg bw (T group). The 5th group was given T concurrently with RJ (TRJ group) and the 6th group was given T concurrently with CLO (TCLO group), at the same doses as the former groups. All treatments were given orally for 30 consecutive days. The concentrations of different brain neurotransmitters, gamma amino butyric acid (GABA), dopamine (DA) and serotonin (5HT) as well as the antioxidant and oxidative stress biomarkers were measured in the brain homogenates. An immunohistochemical staining of the cerebral cortex was applied with the anti-ssDNA antibody (an apoptotic cell marker) to reveal the changes in brain structure. The T group revealed a significant decrease in the concentration of the brain neurotransmitters, a sharp shortage in the level of antioxidant biomarkers (super oxide dismutase, catalase and the reduced glutathione), a marked increase in malondialdehyde levels, and numerous apoptotic cells in the brain cortex compared with the other groups. Interestingly, all the previously mentioned parameters were almost retrieved in both the TRJ and TCLO groups compared to the T group. These results conclusively demonstrate that RJ and CLO administration provides sufficient protection against the ruinous effects of T on rat pups brain tissue function and structure. PMID:26190785

  8. Commensurability effects in holographic homogeneous lattices

    NASA Astrophysics Data System (ADS)

    Andrade, Tomas; Krikun, Alexander

    2016-05-01

    An interesting application of the gauge/gravity duality to condensed matter physics is the description of a lattice via breaking translational invariance on the gravity side. By making use of global symmetries, it is possible to do so without scarifying homogeneity of the pertinent bulk solutions, which we thus term as "homogeneous holographic lattices." Due to their technical simplicity, these configurations have received a great deal of attention in the last few years and have been shown to correctly describe momentum relaxation and hence (finite) DC conductivities.

  9. Studies on uptake and intracellular processing of infectious pancreatic necrosis virus by Atlantic cod scavenger endothelial cells.

    PubMed

    Martin-Armas, M; Sommer, A-I; Smedsrød, B

    2007-11-01

    Previous work in our group has identified the scavenger endothelial cells (SECs) of heart endocardium in cod, Gadus morhua L., as the major site for elimination of both physiological and foreign macromolecular waste from the circulation. The present study was undertaken to establish the role of cod SECs in the clearance of virus. We focused on infectious pancreatic necrosis virus (IPNV) as it is a well-known virus with a broad host range, and causes significant economic losses in the salmon industry. Our results showed that cod SEC cultures infected by the IPNV produce high titres of new virus. Ligand-receptor inhibition experiments suggested that the virus did not enter the cells through any of the major endocytosis receptors of cod SECs. Yet, the infection lowered the capacity of the cells to endocytose ligands via the scavenger receptor. Inhibitors of receptor recycling and vesicle acidification did not affect virus infectivity. The finding that SEC cultures prepared from 25% of the cod produced high titres of IPNV without being infected in the laboratory, suggests that SECs of cod may serve as reservoirs for IPNV in persistently infected cod. PMID:17958614

  10. Overexpression of the pleiotropic regulator CodY decreases sporulation, attachment and pellicle formation in Bacillus anthracis.

    PubMed

    Gopalani, Monisha; Dhiman, Alisha; Rahi, Amit; Bhatnagar, Rakesh

    2016-01-15

    CodY, a global transcriptional regulator, primarily functions as a nutrient and energy sensor. It is activated by metabolic effectors like BCAA and GTP. In low G + C Gram positive bacteria, it facilitates coupling of changes in the cellular metabolite pool with those required in the transcriptome of the cell. This pleiotropic regulator controls the expression of a vast number of genes as the cell transits from exponential to the stationary phase. Earlier studies have shown that CodY is required for the virulence of Bacillus anthracis. We sought to investigate the effect of its overexpression on the physiology of B. anthracis. In our study, we found that cellular CodY levels were unchanged during this phase-transition. Expression of endogenous CodY remained the same in different nutrient limiting conditions. Immunoblotting studies revealed CodY presence in the whole spore lysate of B. anthracis indicating it to be a component of the spore proteome. We could also detect CodY in the secretome of B. anthracis. Further, CodY was overexpressed in B. anthracis Sterne strain and this led to a 100-fold decrease in the sporulation titer and a 2.5-fold decrease in the in vitro attachment ability of the bacteria. We also observed a decrease in the pellicle formation by CodY overexpressed strain when compared to wildtype bacilli. The CodY overexpressed strain showed chaining phenotype during growth in liquid media and pellicle. PMID:26686421

  11. Counteractive Balancing of Transcriptome Expression Involving CodY and CovRS in Streptococcus pyogenes▿†

    PubMed Central

    Kreth, Jens; Chen, Zhiyun; Ferretti, Joseph; Malke, Horst

    2011-01-01

    Streptococcus pyogenes (group A streptococcus [GAS]) responds to environmental changes in a manner that results in an adaptive regulation of the transcriptome. The objective of the present study was to understand how two global transcriptional regulators, CodY and CovRS, coordinate the transcriptional network in S. pyogenes. Results from expression microarray data and quantitative reverse transcription-PCR (qRT-PCR) showed that the global regulator CodY controls the expression of about 250 genes, or about 17% of the genome of strain NZ131. Additionally, the codY gene was shown to be negatively autoregulated, with its protein binding directly to the promoter region with a CodY binding site. In further studies, the influence of codY, covRS, and codY-covRS mutations on gene expression was analyzed in growth phase-dependent conditions using C medium, reported to mimic nutritional abundance and famine conditions similar to those found during host GAS infection. Additional biological experiments of several virulence phenotypes, including pilin production, biofilm formation, and NAD glycohydrolase activity, demonstrated the role that both CodY and CovRS play in their regulation. Correlation analysis of the overall data revealed that, in exponentially growing cells, CodY and CovRS act in opposite directions, with CodY stimulating and CovRS repressing a substantial fraction of the core genome, including many virulence factors. This is the first report of counteractive balancing of transcriptome expression by global transcription regulators and provides important insight into how GAS modulates gene expression by integrating important extracellular and intracellular information. PMID:21705595

  12. CodY-Mediated Regulation of the Staphylococcus aureus Agr System Integrates Nutritional and Population Density Signals

    PubMed Central

    Roux, Agnès; Todd, Daniel A.; Velázquez, Jose V.; Cech, Nadja B.

    2014-01-01

    The Staphylococcus aureus Agr system regulates virulence gene expression by responding to cell population density (quorum sensing). When an extracellular peptide signal (AIP-III in strain UAMS-1, used for these experiments) reaches a concentration threshold, the AgrC-AgrA two-component regulatory system is activated through a cascade of phosphorylation events, leading to induction of the divergently transcribed agrBDCA operon and the RNAIII gene. RNAIII is a posttranscriptional regulator of numerous metabolic and pathogenesis genes. CodY, a global regulatory protein, is known to repress agrBDCA and RNAIII transcription during exponential growth in rich medium, but the mechanism of this regulation has remained elusive. Here we report that phosphorylation of AgrA by the AgrC protein kinase is required for the overexpression of the agrBDCA operon and the RNAIII gene in a codY mutant during the exponential-growth phase, suggesting that the quorum-sensing system, which normally controls AgrC activation, is active even in exponential-phase cells in the absence of CodY. In part, such premature expression of RNAIII was attributable to higher-than-normal accumulation of AIP-III in a codY mutant strain, as determined using ultrahigh-performance liquid chromatography coupled to mass spectrometry. Although CodY is a strong repressor of the agr locus, CodY bound only weakly to the agrBDCA-RNAIII promoter region, suggesting that direct regulation by CodY is unlikely to be the principal mechanism by which CodY regulates agr and RNAIII expression. Taken together, these results strongly suggest that cell population density signals inducing virulence gene expression can be overridden by nutrient availability, a condition monitored by CodY. PMID:24391052

  13. Trophic relations of capelin Mallotus villosus and polar cod Boreogadus saida in the Barents Sea as a factor of impact on the ecosystem

    NASA Astrophysics Data System (ADS)

    Orlova, Emma L.; Dolgov, Andrey V.; Rudneva, Galina B.; Oganin, Ivan A.; Konstantinova, Ludmila L.

    2009-10-01

    The purpose of the study is to assess the role of trophic relations of the dominant pelagic fishes capelin and polar cod in the Barents Sea with regard to distribution and accessibility as prey for the Atlantic cod in warm years (2004-2005). Unlike in the previous period, during these warm years a dramatic increase of the polar cod population resulted in a northwards expansion of the feeding grounds where overlapping of polar cod and capelin concentrations was observed. This caused an increased competition for copepods, which are the main food item for young fish. In the areas dominated by polar cod the shortage of copepods forced immature capelin to switch to the chaetognath Sagitta, which affected their fatness negatively. During the warm years the feeding grounds of Atlantic cod also expanded, to a large degree caused by the shortage of their main food, the capelin. In 2004-2005 the cod formed feeding concentrations in the north and northeast Barents Sea where they fed on the capelin. In this area the consumption of polar cod by cod increased, and in some local areas the polar cod practically replaced the capelin in the diet of cod. In general polar cod in the diet of Atlantic cod were more important in the northern than in the southern part of the Barents Sea. The fatness of cod was extremely low during the whole spring-summer period (until August), and after the feeding period the fatness index of the Atlantic cod became lower than the average long-term autumn value.

  14. Homogeneous Catalysis by Transition Metal Compounds.

    ERIC Educational Resources Information Center

    Mawby, Roger

    1988-01-01

    Examines four processes involving homogeneous catalysis which highlight the contrast between the simplicity of the overall reaction and the complexity of the catalytic cycle. Describes how catalysts provide circuitous routes in which all energy barriers are relatively low rather than lowering the activation energy for a single step reaction.…

  15. General Theorems about Homogeneous Ellipsoidal Inclusions

    ERIC Educational Resources Information Center

    Korringa, J.; And Others

    1978-01-01

    Mathematical theorems about the properties of ellipsoids are developed. Included are Poisson's theorem concerning the magnetization of a homogeneous body of ellipsoidal shape, the polarization of a dielectric, the transport of heat or electricity through an ellipsoid, and other problems. (BB)

  16. Homogeneous Immunoassays: Historical Perspective and Future Promise

    NASA Astrophysics Data System (ADS)

    Ullman, Edwin F.

    1999-06-01

    The founding and growth of Syva Company is examined in the context of its leadership role in the development of homogeneous immunoassays. The simple mix and read protocols of these methods offer advantages in routine analytical and clinical applications. Early homogeneous methods were based on insensitive detection of immunoprecipitation during antigen/antibody binding. The advent of reporter groups in biology provided a means of quantitating immunochemical binding by labeling antibody or antigen and physically separating label incorporated into immune complexes from free label. Although high sensitivity was achieved, quantitative separations were experimentally demanding. Only when it became apparent that reporter groups could provide information, not only about the location of a molecule but also about its microscopic environment, was it possible to design practical non-separation methods. The evolution of early homogenous immunoassays was driven largely by the development of improved detection strategies. The first commercial spin immunoassays, developed by Syva for drug abuse testing during the Vietnam war, were followed by increasingly powerful methods such as immunochemical modulation of enzyme activity, fluorescence, and photo-induced chemiluminescence. Homogeneous methods that quantify analytes at femtomolar concentrations within a few minutes now offer important new opportunities in clinical diagnostics, nucleic acid detection and drug discovery.

  17. Extension theorems for homogenization on lattice structures

    NASA Technical Reports Server (NTRS)

    Miller, Robert E.

    1992-01-01

    When applying homogenization techniques to problems involving lattice structures, it is necessary to extend certain functions defined on a perforated domain to a simply connected domain. This paper provides general extension operators which preserve bounds on derivatives of order l. Only the special case of honeycomb structures is considered.

  18. RELIABLE COMPUTATION OF HOMOGENEOUS AZEOTROPES. (R824731)

    EPA Science Inventory

    Abstract

    It is important to determine the existence and composition of homogeneous azeotropes in the analysis of phase behavior and in the synthesis and design of separation systems, from both theoretical and practical standpoints. A new method for reliably locating an...

  19. Homogeneity analysis of precipitation series in Iran

    NASA Astrophysics Data System (ADS)

    Hosseinzadeh Talaee, P.; Kouchakzadeh, Mahdi; Shifteh Some'e, B.

    2014-10-01

    Assessment of the reliability and quality of historical precipitation data is required in the modeling of hydrology and water resource processes and for climate change studies. The homogeneity of the annual and monthly precipitation data sets throughout Iran was tested using the Bayesian, Cumulative Deviations, and von Neumann tests at a significance level of 0.05. The precipitation records from 41 meteorological stations covering the years between 1966 and 2005 were considered. The annual series of Iranian precipitation were found to be homogeneous by applying the Bayesian and Cumulative Deviations tests, while the von Neumann test detected inhomogeneities at seven stations. Almost all the monthly precipitation data sets are homogeneous and considered as "useful." The outputs of the statistical tests for the homogeneity analysis of the precipitation time series had discrepancies in some cases which are related to different sensitivities of the tests to break in the time series. It was found that the von Neumann test is more sensitive than the Bayesian and Cumulative Deviations tests in the determination of inhomogeneity in the precipitation series.

  20. Anaerobic microbial fuel cell treating combined industrial wastewater: Correlation of electricity generation with pollutants.

    PubMed

    Abbasi, Umara; Jin, Wang; Pervez, Arshid; Bhatti, Zulfiqar Ahmad; Tariq, Madiha; Shaheen, Shahida; Iqbal, Akhtar; Mahmood, Qaisar

    2016-01-01

    Microbial fuel cell (MFC) is a new technology that not only generates energy but treats wastewater as well. A dual chamber MFC was operated under laboratory conditions. Wastewater samples from vegetable oil industries, metal works, glass and marble industries, chemical industries and combined industrial effluents were collected and each was treated for 98h in MFC. The treatment efficiency for COD in MFC was in range of 85-90% at hydraulic retention time (HRT) of 96h and had significant impact on wastewater treatment as well. The maximum voltage of 890mV was generated when vegetable oil industries discharge was treated with columbic efficiency of 5184.7C. The minimum voltage was produced by Glass House wastewater which was 520mV. There was positive significant co-relation between COD concentration and generated voltage. Further research should be focused on the organic contents of wastewater and various ionic species affecting voltage generation in MFC. PMID:26476157

  1. EFFECT OF STARCH ADDITION ON THE PERFORMANCE AND SLUDGE CHARACTERIZATION OF UASB PROCESS TREATING METHANOLIC WASTEWATER

    NASA Astrophysics Data System (ADS)

    Yan, Feng; Kobayashi, Takuro; Takahashi, Shintaro; Li, Yu-You; Omura, Tatsuo

    A mesophilic(35℃) UASB reactor treating synthetic wastewater containing methanol with addition of starch was continuously operated for over 430 days by changing the organic loading rate from 2.5 to 120kg-COD/m3.d. The microbial community structure of the granules was analyzed with the molecular tools and its metabolic characteristics were evaluated using specific methanogenic activity tests. The process was successfully operated with over 98% soluble COD removal efficiency at VLR 30kg-COD/m3.d for approximately 300 days, and granulation satisfactory proceeded. The results of cloning and fluorescence in situ hybridization analysis suggest that groups related the genus Methanomethylovorans and the genus Methanosaeta were predominant in the reactor although only the genus Methanomethylovorans was predominant in the reactor treating methanolic wastewater in the previous study. Abundance of the granules over 0.5 mm in diameter in the reactor treating methanolic wastewater with addition of starch was 3 times larger than that in the reactor treating methanolic wastewater. Specific methanogenic activity tests in this study indicate that the methanol-methane pathway and the methanol-H2/CO2-methane pathway were predominant, and however, there was a certain level of activity for acetate-methane pathway unlike the reactor treating methanolic wastewater. These results suggest addition of starch might be responsible for diversifying the microbial community and encouraging the granulation.

  2. Effect of Algal Inoculation on COD and Nitrogen Removal, and Indigenous Bacterial Dynamics in Municipal Wastewater.

    PubMed

    Lee, Jangho; Lee, Jaejin; Shukla, Sudheer Kumar; Park, Joonhong; Lee, Tae Kwon

    2016-05-28

    The effects of algal inoculation on chemical oxygen demand (COD) and total nitrogen (TN) removal, and indigenous bacterial dynamics were investigated in municipal wastewater. Experiments were conducted with municipal wastewater inoculated with either Chlorella vulgaris AG10032, Selenastrum gracile UTEX 325, or Scenedesmus quadricauda AG 10308. C. vulgaris and S. gracile as fast growing algae in municipal wastewater, performed high COD and TN removal in contrast to Sc. quadricauda. The indigenous bacterial dynamics revealed by 16S rRNA gene amplification showed different bacterial shifts in response to different algal inoculations. The dominant bacterial genera of either algal case were characterized as heterotrophic nitrifying bacteria. Our results suggest that selection of indigenous bacteria that symbiotically interact with algal species is important for better performance of wastewater treatment. PMID:26930350

  3. Enhanced removal of COD and color from landfill leachate in a sequential bioreactor.

    PubMed

    Ghosh, Pooja; Swati; Thakur, Indu Shekhar

    2014-10-01

    In the present study, a sequential treatment process was carried out using a fungal sp. (Phanerochaete sp.) followed by a bacterial sp. (Pseudomonas sp.) for the degradation and detoxification of contaminants in landfill leachate. The process was optimized using Box-Behnken design (BBD) and response surface methodology (RSM) for three variables (C source, N source and duration), while monitoring two responses (% COD and color removal). After treatment in a bioreactor under optimized conditions, enhanced removal of COD (76.9%) and color (45.4%) was observed. Further, GC-MS analysis of metabolites detected at different stages of treatment showed formation of degradation products of lignin and polycyclic aromatic compounds. Treatment efficiency was finally evaluated by the alkaline comet assay in HepG2 human hepato-carcinoma cells. The results indicated no statistically significant DNA damage at the end of the treatment, making the effluent suitable to be discharged conforming to the safety standards. PMID:25113402

  4. Pressure-temperature stability, Ca2+ binding, and pressure-temperature phase diagram of cod parvalbumin: Gad m 1.

    PubMed

    Somkuti, Judit; Bublin, Merima; Breiteneder, Heimo; Smeller, László

    2012-07-31

    Fish allergy is associated with IgE-mediated hypersensitivity reactions to parvalbumins, which are small calcium-binding muscle proteins and represent the major and sole allergens for 95% of fish-allergic patients. We performed Fourier transform infrared and tryptophan fluorescence spectroscopy to explore the pressure-temperature (p-T) phase diagram of cod parvalbumin (Gad m 1) and to elucidate possible new ways of pressure-temperature inactivation of this food allergen. Besides the secondary structure of the protein, the Ca(2+) binding to aspartic and glutamic acid residues was detected. The phase diagram was found to be quite complex, containing partially unfolded and molten globule states. The Ca(2+) ions were essential for the formation of the native structure. A molten globule conformation appears at 50 °C and atmospheric pressure, which converts into an unordered aggregated state at 75 °C. At >200 MPa, only heat unfolding, but no aggregation, was observed. A pressure of 500 MPa leads to a partially unfolded state at 27 °C. The complete pressure unfolding could only be reached at an elevated temperature (40 °C) and pressure (1.14 GPa). A strong correlation was found between Ca(2+) binding and the protein conformation. The partially unfolded state was reversibly refolded. The completely unfolded molecule, however, from which Ca(2+) was released, could not refold. The heat-unfolded protein was trapped either in the aggregated state or in the molten globule state without aggregation at elevated pressures. The heat-treated and the combined heat- and pressure-treated protein samples were tested with sera of allergic patients, but no change in allergenicity was found. PMID:22765301

  5. Prehistoric versus modern Baltic Sea cod fisheries: selectivity across the millennia

    PubMed Central

    Limburg, Karin E; Walther, Yvonne; Hong, Bongghi; Olson, Carina; Storå, Jan

    2008-01-01

    Combining Stone Age and modern data provides unique insights for management, extending beyond contemporary problems and shifting baselines. Using fish chronometric parts, we compared demographic characteristics of exploited cod populations from the Neolithic Period (4500 BP) to the modern highly exploited fishery in the central Baltic Sea. We found that Neolithic cod were larger (mean 56.4 cm, 95% confidence interval (CI)±0.9) than modern fish (weighted mean length in catch =49.5±0.2 cm in 1995, 48.2±0.2 cm in 2003), and older (mean ages =4.7±0.11, 3.1±0.02 and 3.6±0.02 years for Neolithic, 1995, and 2003 fisheries, respectively). Fishery-independent surveys in 1995 and 2003 show that mean sizes in the stock are 16–17 cm smaller than reflected in the fishery, and mean ages approximately 1–1.5 years younger. Modelled von Bertalanffy growth and back-calculated lengths indicated that Neolithic cod grew to smaller asymptotic lengths, but were larger at younger ages, implying rapid early growth. Very small Neolithic cod were absent and large individuals were rare as in modern times. This could be owing to selective harvests, the absence of small and large fish in the area or a combination. Comparing modern and prehistoric times, fishery selection is evident, but apparently not as great as in the North Atlantic proper. PMID:18755680

  6. Long distance linkage disequilibrium and limited hybridization suggest cryptic speciation in atlantic cod.

    PubMed

    Bradbury, Ian R; Bowman, Sharen; Borza, Tudor; Snelgrove, Paul V R; Hutchings, Jeffrey A; Berg, Paul R; Rodríguez-Ezpeleta, Naiara; Lighten, Jackie; Ruzzante, Daniel E; Taggart, Christopher; Bentzen, Paul

    2014-01-01

    Hybrid zones provide unprecedented opportunity for the study of the evolution of reproductive isolation, and the extent of hybridization across individuals and genomes can illuminate the degree of isolation. We examine patterns of interchromosomal linkage disequilibrium (ILD) and the presence of hybridization in Atlantic cod, Gadus morhua, in previously identified hybrid zones in the North Atlantic. Here, previously identified clinal loci were mapped to the cod genome with most (∼70%) occurring in or associated with (<5 kb) coding regions representing a diverse array of possible functions and pathways. Despite the observation that clinal loci were distributed across three linkage groups, elevated ILD was observed among all groups of clinal loci and strongest in comparisons involving a region of low recombination along linkage group 7. Evidence of ILD supports a hypothesis of divergence hitchhiking transitioning to genome hitchhiking consistent with reproductive isolation. This hypothesis is supported by Bayesian characterization of hybrid classes present and we find evidence of common F1 hybrids in several regions consistent with frequent interbreeding, yet little evidence of F2 or backcrossed individuals. This work suggests that significant barriers to hybridization and introgression exist among these co-occurring groups of cod either through strong selection against hybrid individuals, or genetic incompatibility and intrinsic barriers to hybridization. In either case, the presence of strong clinal trends, and little gene flow despite extensive hybridization supports a hypothesis of reproductive isolation and cryptic speciation in Atlantic cod. Further work is required to test the degree and nature of reproductive isolation in this species. PMID:25259573

  7. Long Distance Linkage Disequilibrium and Limited Hybridization Suggest Cryptic Speciation in Atlantic Cod

    PubMed Central

    Bradbury, Ian R.; Bowman, Sharen; Borza, Tudor; Snelgrove, Paul V. R.; Hutchings, Jeffrey A.; Berg, Paul R.; Rodríguez-Ezpeleta, Naiara; Lighten, Jackie; Ruzzante, Daniel E.; Taggart, Christopher; Bentzen, Paul

    2014-01-01

    Hybrid zones provide unprecedented opportunity for the study of the evolution of reproductive isolation, and the extent of hybridization across individuals and genomes can illuminate the degree of isolation. We examine patterns of interchromosomal linkage disequilibrium (ILD) and the presence of hybridization in Atlantic cod, Gadus morhua, in previously identified hybrid zones in the North Atlantic. Here, previously identified clinal loci were mapped to the cod genome with most (∼70%) occurring in or associated with (<5 kb) coding regions representing a diverse array of possible functions and pathways. Despite the observation that clinal loci were distributed across three linkage groups, elevated ILD was observed among all groups of clinal loci and strongest in comparisons involving a region of low recombination along linkage group 7. Evidence of ILD supports a hypothesis of divergence hitchhiking transitioning to genome hitchhiking consistent with reproductive isolation. This hypothesis is supported by Bayesian characterization of hybrid classes present and we find evidence of common F1 hybrids in several regions consistent with frequent interbreeding, yet little evidence of F2 or backcrossed individuals. This work suggests that significant barriers to hybridization and introgression exist among these co-occurring groups of cod either through strong selection against hybrid individuals, or genetic incompatibility and intrinsic barriers to hybridization. In either case, the presence of strong clinal trends, and little gene flow despite extensive hybridization supports a hypothesis of reproductive isolation and cryptic speciation in Atlantic cod. Further work is required to test the degree and nature of reproductive isolation in this species. PMID:25259573

  8. Mechanistic insights into the effects of climate change on larval cod.

    PubMed

    Kristiansen, Trond; Stock, Charles; Drinkwater, Kenneth F; Curchitser, Enrique N

    2014-05-01

    Understanding the biophysical mechanisms that shape variability in fisheries recruitment is critical for estimating the effects of climate change on fisheries. In this study, we used an Earth System Model (ESM) and a mechanistic individual-based model (IBM) for larval fish to analyze how climate change may impact the growth and survival of larval cod in the North Atlantic. We focused our analysis on five regions that span the current geographical range of cod and are known to contain important spawning populations. Under the SRES A2 (high emissions) scenario, the ESM-projected surface ocean temperatures are expected to increase by >1 °C for 3 of the 5 regions, and stratification is expected to increase at all sites between 1950-1999 and 2050-2099. This enhanced stratification is projected to decrease large (>5 μm ESD) phytoplankton productivity and mesozooplankton biomass at all 5 sites. Higher temperatures are projected to increase larval metabolic costs, which combined with decreased food resources will reduce larval weight, increase the probability of larvae dying from starvation and increase larval exposure to visual and invertebrate predators at most sites. If current concentrations of piscivore and invertebrate predators are maintained, larval survival is projected to decrease at all five sites by 2050-2099. In contrast to past observed responses to climate variability in which warm anomalies led to better recruitment in cold-water stocks, our simulations indicated that reduced prey availability under climate change may cause a reduction in larval survival despite higher temperatures in these regions. In the lower prey environment projected under climate change, higher metabolic costs due to higher temperatures outweigh the advantages of higher growth potential, leading to negative effects on northern cod stocks. Our results provide an important first large-scale assessment of the impacts of climate change on larval cod in the North Atlantic. PMID

  9. Evidence for and characterization of nervous necrosis virus infection in Pacific cod (Gadus macrocephalus).

    PubMed

    Mao, Ming-Guang; Wen, Shi-Hui; Perálvarez-Marín, Alex; Li, Hua; Jiang, Jie-Lan; Jiang, Zhi-Qiang; Li, Xing; Sun, Hang; Lü, Hui-Qian

    2015-09-01

    A mortality rate higher than 90% was observed in a larva-rearing facility for Pacific cod, Gadus macrocephalus, in China. Larvae showing clinical signs of infection were collected. Initial suspicion of nervous necrosis virus (NNV) infection was confirmed by sequencing, absolute quantification real-time PCR (A-qPCR), and electron microscopy. The nucleotide sequence of RNA2 was 1,375 bases long (GenBank no. KM576685), coding for a single ORF corresponding to the capsid protein from residues 21 to 1034. Phylogenetic analysis of the capsid protein sequence showed that PCNNV belongs to the barfin flounder NNV (BFNVV) genotype. An amino acid sequence alignment revealed 39 differences between the cold- and warm-resistant viral groups, suggesting that PCNNV evolved under temperature selection. The 3-D structure of the predicted capsid protein was modeled to identify potential epitopes, and the gene was expressed in Escherichia coli, yielding a protein with a molecular mass of 55 kDa. During PCNNV outbreaks, the viral copy number was found to reach 10(7) per ng of total RNA, which could be considered the lethal copy number of NNV in cod. The gonads, eggs, fertilized eggs and asymptomatic cod fry were all positive for PCNNV, indicating viral vertical transmission as the main source of the viral load. The amount of virus in the apparent healthy fry or survivors seemed to decrease gradually with development. These results might lead to efficient diagnostic methods to help farmers select NNV-free broodfish for cod breeding. PMID:26115691

  10. Diet affects the redox system in developing Atlantic cod (Gadus morhua) larvae

    PubMed Central

    Penglase, Samuel; Edvardsen, Rolf B.; Furmanek, Tomasz; Rønnestad, Ivar; Karlsen, Ørjan; van der Meeren, Terje; Hamre, Kristin

    2015-01-01

    The growth and development of marine fish larvae fed copepods is superior to those fed rotifers, but the underlying molecular reasons for this are unclear. In the following study we compared the effects of such diets on redox regulation pathways during development of Atlantic cod (Gadus morhua) larvae. Cod larvae were fed a control diet of copepods or the typical rotifer/Artemia diet commonly used in commercial marine fish hatcheries, from first feeding until after metamorphosis. The oxidised and reduced glutathione levels, the redox potential, and the mRNA expression of 100 genes in redox system pathways were then compared between treatments during larval development. We found that rotifer/Artemia-fed cod larvae had lower levels of oxidised glutathione, a more reduced redox potential, and altered expression of approximately half of the redox system genes when compared to copepod-fed larvae. This rotifer/Artemia diet-induced differential regulation of the redox system was greatest during periods of suboptimal growth. Upregulation of the oxidative stress response transcription factor, nrf2, and NRF2 target genes in rotifer/Artemia fed larvae suggest this diet induced an NRF2-mediated oxidative stress response. Overall, the data demonstrate that nutritional intake plays a role in regulating the redox system in developing fish larvae. This may be a factor in dietary-induced differences observed in larval growth. PMID:26099546

  11. Organochlorines including polychlorinated biphenyls in muscle, liver, and ovaries of cod, Gadus morhua

    SciTech Connect

    Hellou, J.; Warren, W.G.; Payne, J.F. )

    1993-11-01

    Twenty-three specific organochlorine contaminants and polychlorinated biphenyls (PCBs), measured as three Aroclor standards were analyzed in muscle, liver, and ovaries of cod, Gadus morhua, collected in the Northwest Atlantic. In general, contaminants were undetectable in muscle tissue, while concentrations were 10 times lower in ovaries than liver (wet weight). Comparison of results to other locations indicated a similarity between the ratio of the concentrations of p,p'-DDE, p,p'-DDD and p,p'-DDT, in liver of cod from the northern North Sea and from the Northwest Atlantic, although with lower levels in the present study. The ratio of alpha-HCH and gamma-HCH was between that of the central and northern North Sea. Similar ratios tend to indicate similar residence times in the atmosphere, from source to sampling area. Comparison of sigma PCB and sigma DDT in the liver of cod from various geographical locations showed the following general trend in concentrations: Arctic, Northwest Atlantic, West Atlantic, Norway < North Baltic, Nova Scotia, North Sea < South Baltic. It was observed that if the liver concentration of one compound was low (high), there was a tendency for all compounds to be low (high). Cluster analysis of organochlorines in liver pointed to the presence of four basic clusters, which could reflect similar physical chemical properties within a group. Concentrations of organochlorines in ovaries were below levels expected to affect egg and larval viability.

  12. An integrated approach to gene discovery and marker development in Atlantic cod (Gadus morhua).

    PubMed

    Bowman, Sharen; Hubert, Sophie; Higgins, Brent; Stone, Cynthia; Kimball, Jennifer; Borza, Tudor; Bussey, Jillian Tarrant; Simpson, Gary; Kozera, Catherine; Curtis, Bruce A; Hall, Jennifer R; Hori, Tiago S; Feng, Charles Y; Rise, Marlies; Booman, Marije; Gamperl, A Kurt; Trippel, Edward; Symonds, Jane; Johnson, Stewart C; Rise, Matthew L

    2011-04-01

    Atlantic cod is a species that has been overexploited by the capture fishery. Programs to domesticate this species are underway in several countries, including Canada, to provide an alternative route for production. Selective breeding programs have been successfully applied in the domestication of other species, with genomics-based approaches used to augment conventional methods of animal production in recent years. Genomics tools, such as gene sequences and sets of variable markers, also have the potential to enhance and accelerate selective breeding programs in aquaculture, and to provide better monitoring tools to ensure that wild cod populations are well managed. We describe the generation of significant genomics resources for Atlantic cod through an integrated genomics/selective breeding approach. These include 158,877 expressed sequence tags (ESTs), a set of annotated putative transcripts and several thousand single nucleotide polymorphism markers that were developed from, and have been shown to be highly variable in, fish enrolled in two selective breeding programs. Our EST collection was generated from various tissues and life cycle stages. In some cases, tissues from which libraries were generated were isolated from fish exposed to stressors, including elevated temperature, or antigen stimulation (bacterial and viral) to enrich for transcripts that are involved in these response pathways. The genomics resources described here support the developing aquaculture industry, enabling the application of molecular markers within selective breeding programs. Marker sets should also find widespread application in fisheries management. PMID:20396923

  13. Preparation of Bamboo Chars and Bamboo Activated Carbons to Remove Color and COD from Ink Wastewater.

    PubMed

    Hata, Motohide; Amano, Yoshimasa; Thiravetyan, Paitip; Machida, Motoi

    2016-01-01

    Bamboo chars and bamboo activated carbons prepared by steam activation were applied for ink wastewater treatment. Bamboo char at 800 °C was the best for the removal of color and chemical oxygen demand (COD) from ink wastewater compared to bamboo chars at 300 to 700 °C due to higher surface area and mesopore volume. Bamboo activated carbon at 600 °C (S600) was the best compared to bamboo activated carbon at 800 °C (S800), although S800 had larger surface area (1108 m(2)/g) than S600 (734 m(2)/g). S600 had higher mesopore volume (0.20 cm(3)/g) than S800 (0.16 cm(3)/g) and therefore achieved higher color and COD removal. All bamboo activated carbons showed higher color and COD removal efficiency than commercial activated carbon. In addition, S600 had the superior adsorption capacity for methylene blue (0.89 mmol/g). Therefore, bamboo is a suitable material to prepare adsorbents for removal of organic pollutants. PMID:26803031

  14. Isolation and characterisation of two cDNAs encoding transglutaminase from Atlantic cod (Gadus morhua).

    PubMed

    Furnes, Clemens; Kileng, Øyvind; Jensen, Ingvill; Karki, Pralav; Eichacker, Lutz; Robertsen, Børre

    2014-01-01

    Two cDNAs encoding transglutaminase (TG) were identified in a subtractive cDNA library prepared from the head kidney of poly I:C stimulated Atlantic cod (Gadus morhua). Full-length TG-1 and TG-2 cDNA were cloned from the head kidney by a reverse-transcription polymerase chain reaction (RT-PCR) and rapid amplification of cDNA ends (RACE). The deduced amino acid (aa) sequence for TG-1 was 695 aa with an estimated molecular mass of 78.3 kDa, while TG-2 was a 698 aa protein with an estimated molecular mass of 78.8 kDa. The two proteins were named TG-1 and TG-2 and both possess transglutaminase/protease-like homologous domains (TGc) and full conservation of amino acids cysteine, histidine, and aspartate residues that form the catalytic triad. Sequence analysis showed high similarity (93.1%) with Alaska pollock TG, and the TGs were grouped together with TGs from chum salmon, Japanese flounder, Nile tilapia, and red sea bream in addition to Alaska pollock in phylogenetic analysis. Interestingly, they showed different tissue distribution with highest constitutive expression in reproductive and immunological organs, indicating important roles in these organs. Furthermore, the up-regulation of TG-1 and TG-2 in head kidney after stimulating Atlantic cod with poly I:C suggested a role of TGs in immune response in Atlantic cod. PMID:24316498

  15. Geological Interpretation of Bathymetric and Backscatter Imagery of the Sea Floor off Eastern Cape Cod, Massachusetts

    USGS Publications Warehouse

    Poppe, Larry J.; Paskevich, Valerie F.; Butman, Bradford; Ackerman, Seth D.; Danforth, William W.; Foster, Dave S.; Blackwood, Dann S.

    2006-01-01

    The imagery, interpretive data layers, and data presented herein were derived from multibeam echo-sounder data collected off Eastern Cape Cod, Massachusetts, and from the stations occupied to verify these acoustic data. The basic data layers show sea-floor topography, sun-illuminated shaded relief, and backscatter intensity; interpretive layers show the distributions of surficial sediment and sedimentary environments. Presented verification data include new and historical sediment grain-size analyses and a gallery of still photographs of the seabed. The multibeam data, which cover a narrow band of the sea floor extending from Provincetown around the northern tip of Cape Cod and south southeastward to off Monomoy Island, were collected during transits between concurrent mapping projects in the Stellwagen Bank National Marine Sanctuary (Valentine and others, 2001; Butman and others, 2004; and Valentine, 2005) and Great South Channel (Valentine and others, 2003a, b, c, d). Although originally collected to maximize the use of time aboard ship, these data provide a fundamental framework for research and management activities in this part of the Gulf of Maine (Noji and others, 2004), show the composition and terrain of the seabed, and provide information on sediment transport and benthic habitat. These data and interpretations also support ongoing modeling studies of the lower Cape's aquifer system (Masterson, 2004) and of erosional hotspots along the Cape Cod National Seashore (List and others, 2006).

  16. The relation of ground-water quality to housing density, Cape Cod, Massachusetts

    USGS Publications Warehouse

    Persky, J.H.

    1986-01-01

    Correlation of median nitrate concentration in groundwater with housing density for 18 sample areas on Cape Cod yields a Pearson correlation coefficient of 0.802, which is significant at the 95 % confidence level. In five of nine sample areas where housing density is greater than one unit/acre, nitrate concentrations exceed 5 mg of nitrate/L (the Barnstable County planning goal for nitrate) in 25% of wells. Nitrate concentrations exceed 5 mg of nitrogen/L in 25% of wells in only one of nine sample areas where housing density is less than one unit/acre. Median concentrations of sodium and iron, and median levels of pH and specific conductance, are not significantly correlated with housing density. A computer generated map of nitrate shows a positive relation between nitrate concentration and housing density on Cape Cod. However, the presence of septage- or sewage-disposal sites and fertilizer use are also important factors that affect the nitrate concentration. A map of specific conductance also shows a positive relation to housing density, but little or no relation between housing density and sodium, ammonia, pH, or iron is apparent on the maps. Chemical analyses of samples collected from 3,468 private- and public-supply wells between January 1980 and June 1984 were used to examine the extent to which housing density determines water quality on Cape Cod, an area largely unsewered and underlain by a sole source aquifer. (Author 's abstract)

  17. Crystal structure of cod liver class I alcohol dehydrogenase: substrate pocket and structurally variable segments.

    PubMed Central

    Ramaswamy, S.; el Ahmad, M.; Danielsson, O.; Jörnvall, H.; Eklund, H.

    1996-01-01

    The structural framework of cod liver alcohol dehydrogenase is similar to that of horse and human alcohol dehydrogenases. In contrast, the substrate pocket differs significantly, and main differences are located in three loops. Nevertheless, the substrate pocket is hydrophobic like that of the mammalian class I enzymes and has a similar topography in spite of many main-chain and side-chain differences. The structural framework of alcohol dehydrogenase is also present in a number of related enzymes like glucose dehydrogenase and quinone oxidoreductase. These enzymes have completely different substrate specificity, but also for these enzymes, the corresponding loops of the substrate pocket have significantly different structures. The domains of the two subunits in the crystals of the cod enzyme further differ by a rotation of the catalytic domains by about 6 degrees. In one subunit, they close around the coenzyme similarly as in coenzyme complexes of the horse enzyme, but form a more open cleft in the other subunit, similar to the situation in coenzyme-free structures of the horse enzyme. The proton relay system differs from the mammalian class I alcohol dehydrogenases. His 51, which has been implicated in mammalian enzymes to be important for proton transfer from the buried active site to the surface is not present in the cod enzyme. A tyrosine in the corresponding position is turned into the substrate pocket and a water molecule occupies the same position in space as the His side chain, forming a shorter proton relay system. PMID:8845755

  18. Assessing the impact of policy changes in the Icelandic cod fishery using a hybrid simulation model.

    PubMed

    Sigurðardóttir, Sigríður; Johansson, Björn; Margeirsson, Sveinn; Viðarsson, Jónas R

    2014-01-01

    Most of the Icelandic cod is caught in bottom trawlers or longliners. These two fishing methods are fundamentally different and have different economic, environmental, and even social effects. In this paper we present a hybrid-simulation framework to assess the impact of changing the ratio between cod quota allocated to vessels with longlines and vessels with bottom trawls. It makes use of conventional bioeconomic models and discrete event modelling and provides a framework for simulating life cycle assessment (LCA) for a cod fishery. The model consists of two submodels, a system dynamics model describing the biological aspect of the fishery and a discrete event model for fishing activities. The model was run multiple times for different quota allocation scenarios and results are presented where different scenarios are presented in the three dimensions of sustainability: environmental, social, and economic. The optimal allocation strategy depends on weighing the three different factors. The results were encouraging first-steps towards a useful modelling method but the study would benefit greatly from better data on fishing activities. PMID:24778597

  19. Assessing the Impact of Policy Changes in the Icelandic Cod Fishery Using a Hybrid Simulation Model

    PubMed Central

    Sigurðardóttir, Sigríður; Johansson, Björn; Margeirsson, Sveinn; Viðarsson, Jónas R.

    2014-01-01

    Most of the Icelandic cod is caught in bottom trawlers or longliners. These two fishing methods are fundamentally different and have different economic, environmental, and even social effects. In this paper we present a hybrid-simulation framework to assess the impact of changing the ratio between cod quota allocated to vessels with longlines and vessels with bottom trawls. It makes use of conventional bioeconomic models and discrete event modelling and provides a framework for simulating life cycle assessment (LCA) for a cod fishery. The model consists of two submodels, a system dynamics model describing the biological aspect of the fishery and a discrete event model for fishing activities. The model was run multiple times for different quota allocation scenarios and results are presented where different scenarios are presented in the three dimensions of sustainability: environmental, social, and economic. The optimal allocation strategy depends on weighing the three different factors. The results were encouraging first-steps towards a useful modelling method but the study would benefit greatly from better data on fishing activities. PMID:24778597

  20. Feeding ecology of age-0 walleye pollock (Gadus chalcogrammus) and Pacific cod (Gadus macrocephalus) in the southeastern Bering Sea

    NASA Astrophysics Data System (ADS)

    Strasburger, Wesley W.; Hillgruber, Nicola; Pinchuk, Alexei I.; Mueter, Franz J.

    2014-11-01

    Walleye pollock (Gadus chalcogrammus) and Pacific cod (Gadus macrocephalus) are of particular economic and ecological importance in the southeastern Bering Sea. The spatial and temporal overlap of early life stages of both species may explain their strongly correlated recruitment trends. Pelagic larvae and juveniles were collected during four research cruises in May, July and September of 2008, an exceptionally cold year, and their stomach contents were examined. Feeding success and diet composition of walleye pollock and Pacific cod were consistently different in spring, summer, and fall. Pacific cod larvae and juveniles always consumed larger and progressively fewer prey items per stomach than walleye pollock; this difference was particularly pronounced in the fall. Our data suggest that co-occurring early life stages of walleye pollock and Pacific cod were dividing prey resources rather than competing for them, at least during the exceptionally cold conditions in 2008 in the southeastern Bering Sea.

  1. Crystallography Open Database (COD): an open-access collection of crystal structures and platform for world-wide collaboration

    PubMed Central

    Gražulis, Saulius; Daškevič, Adriana; Merkys, Andrius; Chateigner, Daniel; Lutterotti, Luca; Quirós, Miguel; Serebryanaya, Nadezhda R.; Moeck, Peter; Downs, Robert T.; Le Bail, Armel

    2012-01-01

    Using an open-access distribution model, the Crystallography Open Database (COD, http://www.crystallography.net) collects all known ‘small molecule / small to medium sized unit cell’ crystal structures and makes them available freely on the Internet. As of today, the COD has aggregated ∼150 000 structures, offering basic search capabilities and the possibility to download the whole database, or parts thereof using a variety of standard open communication protocols. A newly developed website provides capabilities for all registered users to deposit published and so far unpublished structures as personal communications or pre-publication depositions. Such a setup enables extension of the COD database by many users simultaneously. This increases the possibilities for growth of the COD database, and is the first step towards establishing a world wide Internet-based collaborative platform dedicated to the collection and curation of structural knowledge. PMID:22070882

  2. Homogeneous crystal nucleation in binary metallic melts

    NASA Technical Reports Server (NTRS)

    Thompson, C. V.; Spaepen, F.

    1983-01-01

    A method for calculating the homogeneous crystal nucleation frequency in binary metallic melts is developed. The free energy of crystallization is derived from regular solution models for the liquid and solid and is used, together with model-based estimates of the interfacial tension, to calculate the nucleation frequency from the classical theory. The method can account for the composition dependence of the maximum undercooling observed in a number of experiments on small droplet dispersions. It can also be used to calculate the driving force for crystal growth and to obtain more precise estimates of the homogeneous crystal nucleation frequency in glass-forming alloys. This method, although approximate, is simple to apply, and requires only knowledge of the phase diagram and a few readily available thermodynamic quantities as input data.

  3. Beyond relationships between homogeneous and heterogeneous catalysis

    SciTech Connect

    Dixon, David A.; Katz, Alexander; Arslan, Ilke; Gates, Bruce C.

    2014-08-13

    Scientists who regard catalysis as a coherent field have been striving for decades to articulate the fundamental unifying principles. But because these principles seem to be broader than chemistry, chemical engineering, and materials science combined, catalytic scientists commonly interact within the sub-domains of homogeneous, heterogeneous, and bio-catalysis, and increasingly within even narrower domains such as organocatalysis, phase-transfer catalysis, acid-base catalysis, zeolite catalysis, etc. Attempts to unify catalysis have motivated researchers to find relationships between homogeneous and heterogeneous catalysis and to mimic enzymes. These themes have inspired vibrant international meetings and workshops, and we have benefited from the idea exchanges and have some thoughts about a path forward.

  4. Homogeneous Superpixels from Markov Random Walks

    NASA Astrophysics Data System (ADS)

    Perbet, Frank; Stenger, Björn; Maki, Atsuto

    This paper presents a novel algorithm to generate homogeneous superpixels from Markov random walks. We exploit Markov clustering (MCL) as the methodology, a generic graph clustering method based on stochastic flow circulation. In particular, we introduce a graph pruning strategy called compact pruning in order to capture intrinsic local image structure. The resulting superpixels are homogeneous, i.e. uniform in size and compact in shape. The original MCL algorithm does not scale well to a graph of an image due to the square computation of the Markov matrix which is necessary for circulating the flow. The proposed pruning scheme has the advantages of faster computation, smaller memory footprint, and straightforward parallel implementation. Through comparisons with other recent techniques, we show that the proposed algorithm achieves state-of-the-art performance.

  5. Detonation in shocked homogeneous high explosives

    SciTech Connect

    Yoo, C.S.; Holmes, N.C.; Souers, P.C.

    1995-11-01

    We have studied shock-induced changes in homogeneous high explosives including nitromethane, tetranitromethane, and single crystals of pentaerythritol tetranitrate (PETN) by using fast time-resolved emission and Raman spectroscopy at a two-stage light-gas gun. The results reveal three distinct steps during which the homogeneous explosives chemically evolve to final detonation products. These are (1) the initiation of shock compressed high explosives after an induction period, (2) thermal explosion of shock-compressed and/or reacting materials, and (3) a decay to a steady-state representing a transition to the detonation of uncompressed high explosives. Based on a gray-body approximation, we have obtained the CJ temperatures: 3800 K for nitromethane, 2950 K for tetranitromethane, and 4100 K for PETN. We compare the data with various thermochemical equilibrium calculations. In this paper we will also show a preliminary result of single-shot time-resolved Raman spectroscopy applied to shock-compressed nitromethane.

  6. Resonant ultrasound spectroscopy and homogeneity in polycrystals.

    PubMed

    Kaplan, Gunes; Darling, T W; McCall, K R

    2009-01-01

    Resonant ultrasound spectroscopy (RUS) is capable of determining the bulk elastic properties of a solid from its characteristic vibration frequencies, given the dimensions, density and shape of the sample. The model used for extracting values of the elastic constants assumes perfect homogeneity, which can be approximated by average-isotropic polycrystals. This approximation is excellent in the small grain regime assumed for most averaging procedures, but for real samples with indeterminate grain size distributions, it is not clear where the approximation breaks down. RUS measurements were made on pure copper samples where the grain size distribution was changed by progressive heat treatments in order to find a quantitative limit for the loss of homogeneity. It is found that when a measure of the largest grains is 15% of the sample's smallest dimension, the deviation in RUS fits indicates elastic inhomogeneity. PMID:18804831

  7. Broken Ergodicity in Ideal, Homogeneous, Incompressible Turbulence

    NASA Technical Reports Server (NTRS)

    Morin, Lee; Shebalin, John; Fu, Terry; Nguyen, Phu; Shum, Victor

    2010-01-01

    We discuss the statistical mechanics of numerical models of ideal homogeneous, incompressible turbulence and their relevance for dissipative fluids and magnetofluids. These numerical models are based on Fourier series and the relevant statistical theory predicts that Fourier coefficients of fluid velocity and magnetic fields (if present) are zero-mean random variables. However, numerical simulations clearly show that certain coefficients have a non-zero mean value that can be very large compared to the associated standard deviation. We explain this phenomena in terms of broken ergodicity', which is defined to occur when dynamical behavior does not match ensemble predictions on very long time-scales. We review the theoretical basis of broken ergodicity, apply it to 2-D and 3-D fluid and magnetohydrodynamic simulations of homogeneous turbulence, and show new results from simulations using GPU (graphical processing unit) computers.

  8. CUDA Simulation of Homogeneous, Incompressible Turbulence

    NASA Technical Reports Server (NTRS)

    Morin, Lee; Shebalin, John V.; Shum, Victor; Fu, Terry

    2011-01-01

    We discuss very fast Compute Unified Device Architecture (CUDA) simulations of ideal homogeneous incompressible turbulence based on Fourier models. These models have associated statistical theories that predict that Fourier coefficients of fluid velocity and magnetic fields (if present) are zero-mean random variables. Prior numerical simulations have shown that certain coefficients have a non-zero mean value that can be very large compared to the associated standard deviation. We review the theoretical basis of this "broken ergodicity" as applied to 2-D and 3-D fluid and magnetohydrodynamic simulations of homogeneous turbulence. Our new simulations examine the phenomenon of broken ergodicity through very long time and large grid size runs performed on a state-of-the-art CUDA platform. Results comparing various CUDA hardware configurations and grid sizes are discussed. NS and MHD results are compared.

  9. Homogeneous freezing nucleation of stratospheric solution droplets

    NASA Technical Reports Server (NTRS)

    Jensen, Eric J.; Toon, Owen B.; Hamill, Patrick

    1991-01-01

    The classical theory of homogeneous nucleation was used to calculate the freezing rate of sulfuric acid solution aerosols under stratospheric conditions. The freezing of stratospheric aerosols would be important for the nucleation of nitric acid trihydrate particles in the Arctic and Antarctic stratospheres. In addition, the rate of heterogeneous chemical reactions on stratospheric aerosols may be very sensitive to their state. The calculations indicate that homogeneous freezing nucleation of pure water ice in the stratospheric solution droplets would occur at temperatures below about 192 K. However, the physical properties of H2SO4 solution at such low temperatures are not well known, and it is possible that sulfuric acid aerosols will freeze out at temperatures ranging from about 180 to 195 K. It is also shown that the temperature at which the aerosols freeze is nearly independent of their size.

  10. Homogeneity of kappa statistics in multiple samples.

    PubMed

    Reed, J F

    2000-08-01

    The measurement of intra-observer agreement when the data are categorical has been the subject of several investigators since Cohen first proposed the kappa (kappa) as a chance-corrected coefficient of agreement for nominal scales. Subsequent procedures have been developed to assess the agreement of several raters using a dichotomous classification scheme, assess majority agreement among several raters using a polytomous classification scheme, and the use of kappa as an indicator of the quality of a measurement. Further developments include inference procedures for testing the homogeneity of k>/=2 independent kappa statistics. An executable FORTRAN code for testing the homogeneity of kappa statistics (kappa(h)) across multiple sites or studies is given. The FORTRAN program listing and/or executable programs are available from the author on request. PMID:10927153

  11. Process and system for treating waste water

    DOEpatents

    Olesen, Douglas E.; Shuckrow, Alan J.

    1978-01-01

    A process of treating raw or primary waste water using a powdered, activated carbon/aerated biological treatment system is disclosed. Effluent turbidities less than 2 JTU (Jackson turbidity units), zero TOC (total organic carbon) and in the range of 10 mg/l COD (chemical oxygen demand) can be obtained. An influent stream of raw or primary waste water is contacted with an acidified, powdered, activated carbon/alum mixture. Lime is then added to the slurry to raise the pH to about 7.0. A polyelectrolyte flocculant is added to the slurry followed by a flocculation period -- then sedimentation and filtration. The separated solids (sludge) are aerated in a stabilization sludge basin and a portion thereof recycled to an aerated contact basin for mixing with the influent waste water stream prior to or after contact of the influent stream with the powdered, activated carbon/alum mixture.

  12. A homogenization model of the annulus fibrosus.

    PubMed

    Yin, Luzhong; Elliott, Dawn M

    2005-08-01

    The objective of this study was to use a homogenization model of the anisotropic mechanical behavior of annulus fibrosus (AF) to address some of the issues raised in structural finite element and fiber-reinforced strain energy models. Homogenization theory describes the effect of microstructure on macroscopic material properties by assuming the material is composed of repeating representative volume elements. We first developed the general homogenization model and then specifically prescribed the model to in-plane single lamella and multi-lamellae AF properties. We compared model predictions to experimentally measured AF properties and performed parametric studies. The predicted tensile moduli (E theta and E z) and their dependence on fiber volume fraction and fiber angle were consistent with measured values. However, the model prediction for shear modulus (G thetaz) was two orders of magnitude larger than directly measured values. The values of E theta and E z were strongly dependent on the model input for matrix modulus, much more so than the fiber modulus. These parametric analyses demonstrated the contribution of the matrix in AF load support, which may play a role when protoeglycans are decreased in disc degeneration, and will also be an important design factor in tissue engineering. We next compared the homogenization model to a 3-D structural finite element model and fiber-reinforced energy models. Similarities between the three model types provided confidence in the ability of these models to predict AF tissue mechanics. This study provides a direct comparison between the several types of AF models and will be useful for interpreting previous studies and elucidating AF structure-function relationships in disc degeneration and for functional tissue engineering. PMID:15958225

  13. The Architecture of a Homogeneous Vector Supercomputer

    NASA Astrophysics Data System (ADS)

    Gustafson, J. L.; Hawkinson, S.; Scott, K.

    A new homogeneous computer architecture combines two fundamental techniques for high-speed computing: parallelism based on the binary n-cube interconnect, and pipelined vector arithmetic. The design makes extensive use of VLSI technology, resulting in a processing node that can be economically replicated. The new system achieves a careful balance between high-speed communication and floating-point computation. This paper describes the new architecture in detail and explores some of the issues in developing effective software.

  14. Spherical cloaking with homogeneous isotropic multilayered structures.

    PubMed

    Qiu, Cheng-Wei; Hu, Li; Xu, Xiaofei; Feng, Yijun

    2009-04-01

    We propose a practical realization of electromagnetic spherical cloaking by layered structure of homogeneous isotropic materials. By mimicking the classic anisotropic cloak by many alternating thin layers of isotropic dielectrics, the permittivity and permeability in each isotropic layer can be properly determined by effective medium theory in order to achieve invisibility. The model greatly facilitates modeling by Mie theory and realization by multilayer coating of dielectrics. Eigenmode analysis is also presented to provide insights of the discretization in multilayers. PMID:19518392

  15. The pH-Dependent Expression of the Urease Operon in Streptococcus salivarius Is Mediated by CodY

    PubMed Central

    Huang, Szu-Chuan; Burne, Robert A.

    2014-01-01

    Urease gene expression in Streptococcus salivarius 57.I, a strain of one of the major alkali producers in the mouth, is induced by acidic pH and excess amounts of carbohydrate. Expression is controlled primarily at the transcriptional level from a promoter, pureI. Recent sequencing analysis revealed a CodY box located 2 bases 5′ to the −35 element of pureI. Using continuous chemostat culture, transcription from pureI was shown to be repressed by CodY, and at pH 7 the repression was more pronounced than that in cells grown at pH 5.5 under both 20 and 100 mM glucose. The direct binding of CodY to pureI was demonstrated by electrophoretic mobility shift assay and chromatin immunoprecipitation (ChIP)–quantitative real-time PCR (qPCR). The result of ChIP-qPCR also confirmed that the regulation of CodY is indeed modulated by pH and the binding of CodY at neutral pH is further enhanced by a limited supply of glucose (20 mM). In the absence of CodY, the C-terminal domain of the RNA polymerase (RNAP) α subunit interacted with the AT tracks within the CodY box, indicating that CodY and RNAP compete for the same binding region. Such regulation could ensure optimal urease expression when the enzyme is most required, i.e., at an acidic growth pH with an excess amount of carbon nutrients. PMID:24951785

  16. The pH-dependent expression of the urease operon in Streptococcus salivarius is mediated by CodY.

    PubMed

    Huang, Szu-Chuan; Burne, Robert A; Chen, Yi-Ywan M

    2014-09-01

    Urease gene expression in Streptococcus salivarius 57.I, a strain of one of the major alkali producers in the mouth, is induced by acidic pH and excess amounts of carbohydrate. Expression is controlled primarily at the transcriptional level from a promoter, pureI. Recent sequencing analysis revealed a CodY box located 2 bases 5' to the -35 element of pureI. Using continuous chemostat culture, transcription from pureI was shown to be repressed by CodY, and at pH 7 the repression was more pronounced than that in cells grown at pH 5.5 under both 20 and 100 mM glucose. The direct binding of CodY to pureI was demonstrated by electrophoretic mobility shift assay and chromatin immunoprecipitation (ChIP)-quantitative real-time PCR (qPCR). The result of ChIP-qPCR also confirmed that the regulation of CodY is indeed modulated by pH and the binding of CodY at neutral pH is further enhanced by a limited supply of glucose (20 mM). In the absence of CodY, the C-terminal domain of the RNA polymerase (RNAP) α subunit interacted with the AT tracks within the CodY box, indicating that CodY and RNAP compete for the same binding region. Such regulation could ensure optimal urease expression when the enzyme is most required, i.e., at an acidic growth pH with an excess amount of carbon nutrients. PMID:24951785

  17. Comment on "Slow adaptation in the face of rapid warming leads to collapse of the Gulf of Maine cod fishery".

    PubMed

    Swain, Douglas P; Benoît, Hugues P; Cox, Sean P; Cadigan, Noel G

    2016-04-22

    Pershing et al (Science, 13 November 2015, p. 809) concluded that recent warming in the Gulf of Maine contributed to the collapse of Gulf of Maine cod. We argue that this conclusion is based on a flawed analysis of the population dynamics of this cod stock. We believe that understanding the potential role of climate change in the collapse of this stock requires more defensible analyses. PMID:27102474

  18. Rested and stressed farmed Atlantic cod (Gadus morhua) chilled in ice or slurry and effects on quality.

    PubMed

    Digre, Hanne; Erikson, Ulf; Aursand, Ida G; Gallart-Jornet, Lorena; Misimi, Ekrem; Rustad, Turid

    2011-01-01

    The main objectives of this study were to investigate (1) whether rested harvest of farmed cod was better maintained by chilling with slurry rather than by traditional ice storage, (2) whether chilling with slurry would be a feasible chilling method to assure low core temperatures (≤0 °C) at packing of gutted fish, and (3) the effects of superchilling compared with traditional ice on selected quality parameters of cod during storage. In the experiment, seawater slurry at -2.0 ± 0.3 °C was used. Anesthetized (AQUI-S™), percussion stunned, and stressed cod chilled in slurry were compared. Cod stored on ice were used as reference group. The fish were evaluated at the day of slaughter, and after 7 and 14 d of storage according to handling stress (initial muscle pH, muscle twitches, rigor mortis), core temperatures, quality index method, microbial counts, weight changes, salt and water content, water distribution, pH, adenosine triphosphate-degradation products, K-value, water-holding capacity, fillet color, and texture. Chilling cod in slurry was more rapid than chilling in ice. Prechilling (1 d) of cod in slurry before subsequent ice storage resulted in lower quality 7 d postmortem compared with both ice and continuous slurry storage. The potential advantages of superchilling became more prominent after 14 d with lower microbiological activity, better maintenance of freshness (lower total quality index scores and lower K-values) compared with fish stored on ice. A drawback with slurry-stored fish was that cloudy eyes developed earlier, in addition to weight gain and salt uptake compared to ice-stored fish. Practical Application: Chilling is an essential operation in any fish-processing plant. This manuscript addresses different applications of slurry ice in the processing and storage of Atlantic cod. Cod quality was assessed after 7 and 14 d of iced and superchilled storage. PMID:21535722

  19. 78 FR 53369 - Fisheries of the Exclusive Economic Zone Off Alaska; Pacific Cod in the Bering Sea and Aleutian...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-08-29

    ... using hook-and-line or pot gear in the BSAI under Sec. 679.20(d)(1)(iii) on February 7, 2013 (78 FR 9328... cod by catcher vessels less than 60 feet (18.3 meters) length overall (LOA) using hook-and-line or pot... use the 2013 total allowable catch of Pacific cod allocated to catcher vessels less than 60 feet...

  20. MULTIGRID HOMOGENIZATION OF HETEROGENEOUS POROUS MEDIA

    SciTech Connect

    Dendy, J.E.; Moulton, J.D.

    2000-10-01

    This is the final report of a three-year, Laboratory-Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL); this report, however, reports on only two years research, since this project was terminated at the end of two years in response to the reduction in funding for the LDRD Program at LANL. The numerical simulation of flow through heterogeneous porous media has become a vital tool in forecasting reservoir performance, analyzing groundwater supply and predicting the subsurface flow of contaminants. Consequently, the computational efficiency and accuracy of these simulations is paramount. However, the parameters of the underlying mathematical models (e.g., permeability, conductivity) typically exhibit severe variations over a range of significantly different length scales. Thus the numerical treatment of these problems relies on a homogenization or upscaling procedure to define an approximate coarse-scale problem that adequately captures the influence of the fine-scale structure, with a resultant compromise between the competing objectives of computational efficiency and numerical accuracy. For homogenization in models of flow through heterogeneous porous media, We have developed new, efficient, numerical, multilevel methods, that offer a significant improvement in the compromise between accuracy and efficiency. We recently combined this approach with the work of Dvorak to compute bounded estimates of the homogenized permeability for such flows and demonstrated the effectiveness of this new algorithm with numerical examples.

  1. Homogeneous cooling state of frictionless rod particles

    NASA Astrophysics Data System (ADS)

    Rubio-Largo, S. M.; Alonso-Marroquin, F.; Weinhart, T.; Luding, S.; Hidalgo, R. C.

    2016-02-01

    In this work, we report some theoretical results on granular gases consisting of frictionless 3D rods with low energy dissipation. We performed simulations on the temporal evolution of soft spherocylinders, using a molecular dynamics algorithm implemented on GPU architecture. A homogeneous cooling state for rods, where the time dependence of the system's intensive variables occurs only through a global granular temperature, has been identified. We have found a homogeneous cooling process, which is in excellent agreement with Haff's law, when using an adequate rescaling time τ(ξ), the value of which depends on the particle elongation ξ and the restitution coefficient. It was further found that scaled particle velocity distributions remain approximately Gaussian regardless of the particle shape. Similarly to a system of ellipsoids, energy equipartition between rotational and translational degrees of freedom was better satisfied as one gets closer to the elastic limit. Taking advantage of scaling properties, we have numerically determined the general functionality of the magnitude Dc(ξ), which describes the efficiency of the energy interchange between rotational and translational degrees of freedom, as well as its dependence on particle shape. We have detected a range of particle elongations (1.5 < ξ < 4.0), where the average energy transfer between the rotational and translational degrees of freedom results greater for spherocylinders than for homogeneous ellipsoids with the same aspect ratio.

  2. Homogeneous Biosensing Based on Magnetic Particle Labels

    PubMed Central

    Schrittwieser, Stefan; Pelaz, Beatriz; Parak, Wolfgang J.; Lentijo-Mozo, Sergio; Soulantica, Katerina; Dieckhoff, Jan; Ludwig, Frank; Guenther, Annegret; Tschöpe, Andreas; Schotter, Joerg

    2016-01-01

    The growing availability of biomarker panels for molecular diagnostics is leading to an increasing need for fast and sensitive biosensing technologies that are applicable to point-of-care testing. In that regard, homogeneous measurement principles are especially relevant as they usually do not require extensive sample preparation procedures, thus reducing the total analysis time and maximizing ease-of-use. In this review, we focus on homogeneous biosensors for the in vitro detection of biomarkers. Within this broad range of biosensors, we concentrate on methods that apply magnetic particle labels. The advantage of such methods lies in the added possibility to manipulate the particle labels by applied magnetic fields, which can be exploited, for example, to decrease incubation times or to enhance the signal-to-noise-ratio of the measurement signal by applying frequency-selective detection. In our review, we discriminate the corresponding methods based on the nature of the acquired measurement signal, which can either be based on magnetic or optical detection. The underlying measurement principles of the different techniques are discussed, and biosensing examples for all techniques are reported, thereby demonstrating the broad applicability of homogeneous in vitro biosensing based on magnetic particle label actuation. PMID:27275824

  3. TESTING HOMOGENEITY WITH GALAXY STAR FORMATION HISTORIES

    SciTech Connect

    Hoyle, Ben; Jimenez, Raul; Tojeiro, Rita; Maartens, Roy; Heavens, Alan; Clarkson, Chris

    2013-01-01

    Observationally confirming spatial homogeneity on sufficiently large cosmological scales is of importance to test one of the underpinning assumptions of cosmology, and is also imperative for correctly interpreting dark energy. A challenging aspect of this is that homogeneity must be probed inside our past light cone, while observations take place on the light cone. The star formation history (SFH) in the galaxy fossil record provides a novel way to do this. We calculate the SFH of stacked luminous red galaxy (LRG) spectra obtained from the Sloan Digital Sky Survey. We divide the LRG sample into 12 equal-area contiguous sky patches and 10 redshift slices (0.2 < z < 0.5), which correspond to 120 blocks of volume {approx}0.04 Gpc{sup 3}. Using the SFH in a time period that samples the history of the universe between look-back times 11.5 and 13.4 Gyr as a proxy for homogeneity, we calculate the posterior distribution for the excess large-scale variance due to inhomogeneity, and find that the most likely solution is no extra variance at all. At 95% credibility, there is no evidence of deviations larger than 5.8%.

  4. Homogeneous Biosensing Based on Magnetic Particle Labels.

    PubMed

    Schrittwieser, Stefan; Pelaz, Beatriz; Parak, Wolfgang J; Lentijo-Mozo, Sergio; Soulantica, Katerina; Dieckhoff, Jan; Ludwig, Frank; Guenther, Annegret; Tschöpe, Andreas; Schotter, Joerg

    2016-01-01

    The growing availability of biomarker panels for molecular diagnostics is leading to an increasing need for fast and sensitive biosensing technologies that are applicable to point-of-care testing. In that regard, homogeneous measurement principles are especially relevant as they usually do not require extensive sample preparation procedures, thus reducing the total analysis time and maximizing ease-of-use. In this review, we focus on homogeneous biosensors for the in vitro detection of biomarkers. Within this broad range of biosensors, we concentrate on methods that apply magnetic particle labels. The advantage of such methods lies in the added possibility to manipulate the particle labels by applied magnetic fields, which can be exploited, for example, to decrease incubation times or to enhance the signal-to-noise-ratio of the measurement signal by applying frequency-selective detection. In our review, we discriminate the corresponding methods based on the nature of the acquired measurement signal, which can either be based on magnetic or optical detection. The underlying measurement principles of the different techniques are discussed, and biosensing examples for all techniques are reported, thereby demonstrating the broad applicability of homogeneous in vitro biosensing based on magnetic particle label actuation. PMID:27275824

  5. Phase resolved analysis of the homogeneity of a diffuse dielectric barrier discharge

    NASA Astrophysics Data System (ADS)

    Baldus, Sabrina; Kogelheide, Friederike; Bibinov, Nikita; Stapelmann, Katharina; Awakowicz, Peter

    2015-09-01

    Cold atmospheric pressure plasmas have already proven their ability of supporting the healing process of chronic wounds. Especially simple configurations like a dielectric barrier discharge (DBD), comprising of one driven electrode which is coated with a dielectric layer, are of interest, because they are cost-effective and easy to handle. The homogeneity of such plasmas during treatment is necessary since the whole wound should be treated evenly. In this investigation phase resolved optical emission spectroscopy is used to investigate the homogeneity of a DBD. Electron densities and reduced electric field distributions are determined with temporal and spatial resolution and the differences for applied positive and negative voltage pulses are studied.

  6. Coagulation and precipitation as post-treatment of anaerobically treated primary municipal wastewater.

    PubMed

    Diamadopoulos, Evan; Megalou, Konstantina; Georgiou, Maria; Gizgis, Nikolaos

    2007-02-01

    The main objective of this study was to investigate the feasibility of coagulation as a post-treatment method of anaerobically treated primary municipal wastewater. Both mesophilic and ambient (20 degrees C) temperature conditions were investigated in a laboratory-scale upflow anaerobic sludge bed (UASB) reactor. In addition, optimization of the coagulant, both in terms of type and dose, was performed. Finally, phosphorus removal by means of aluminum and iron coagulation and phosphorus and ammonia nitrogen removal by means of struvite precipitation were studied. Anaerobic treatment of primary effluent at low hydraulic retention times (less than 15 hours) resulted in mean chemical oxygen demand (COD) removals ranging from 50 to 70%, while, based on the filtered treated effluent, the mean removals increased to 65 to 80%. Alum coagulation of the UASB effluent gave suspended solids removals ranging from approximately 35 to 65%. Turbidity removal reached up to 80%. Remaining COD values after coagulation and settling were below 100 mg/L, while remaining total organic carbon (TOC) levels were below 50 mg/L. Filterable COD levels were generally below 60 mg/L, while filterable TOC levels were below 40 mg/L. All coagulants tested, including prepolymerized aluminum and iron coagulants, demonstrated similar efficiency compared with alum for the removal of suspended solids, COD, and TOC. Regarding struvite precipitation, optimal conditions for phosphorus and nitrogen removal were pH 10 and molar ratio of magnesium: ammonia-nitrogen: phosphate-phosphorus close to the stoichiometric ratio (1:1:1). During struvite precipitation, removal of suspended solids reached 40%, while turbidity removal reached values up to 80%. The removal of COD was approximately 30 to 35%; yet, when removal of organic matter was based on the treated filterable COD, the removal increased to approximately 65%. In addition, nitrogen was removed by approximately 70%, while phosphorus removal ranged between

  7. Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions

    PubMed Central

    Solbakken, Monica H.; Tørresen, Ole K.; Nederbragt, Alexander J.; Seppola, Marit; Gregers, Tone F.; Jakobsen, Kjetill S.; Jentoft, Sissel

    2016-01-01

    Genome sequencing of the teleost Atlantic cod demonstrated loss of the Major Histocompatibility Complex (MHC) class II, an extreme gene expansion of MHC class I and gene expansions and losses in the innate pattern recognition receptor (PRR) family of Toll-like receptors (TLR). In a comparative genomic setting, using an improved version of the genome, we characterize PRRs in Atlantic cod with emphasis on TLRs demonstrating the loss of TLR1/6, TLR2 and TLR5 and expansion of TLR7, TLR8, TLR9, TLR22 and TLR25. We find that Atlantic cod TLR expansions are strongly influenced by diversifying selection likely to increase the detectable ligand repertoire through neo- and subfunctionalization. Using RNAseq we find that Atlantic cod TLRs display likely tissue or developmental stage-specific expression patterns. In a broader perspective, a comprehensive vertebrate TLR phylogeny reveals that the Atlantic cod TLR repertoire is extreme with regards to losses and expansions compared to other teleosts. In addition we identify a substantial shift in TLR repertoires following the evolutionary transition from an aquatic vertebrate (fish) to a terrestrial (tetrapod) life style. Collectively, our findings provide new insight into the function and evolution of TLRs in Atlantic cod as well as the evolutionary history of vertebrate innate immunity. PMID:27126702

  8. Multiple specialised goose-type lysozymes potentially compensate for an exceptional lack of chicken-type lysozymes in Atlantic cod

    PubMed Central

    Seppola, Marit; Bakkemo, Kathrine Ryvold; Mikkelsen, Helene; Myrnes, Bjørnar; Helland, Ronny; Irwin, David M.; Nilsen, Inge W.

    2016-01-01

    Previous analyses of the Atlantic cod genome showed unique combinations of lacking and expanded number of genes for the immune system. The present study examined lysozyme activity, lysozyme gene distribution and expression in cod. Enzymatic assays employing specific bacterial lysozyme inhibitors provided evidence for presence of g-type, but unexpectedly not for c-type lysozyme activity. Database homology searches failed to identify any c-type lysozyme gene in the cod genome or in expressed sequence tags from cod. In contrast, we identified four g-type lysozyme genes (LygF1a-d) constitutively expressed, although differentially, in all cod organs examined. The active site glutamate residue is replaced by alanine in LygF1a, thus making it enzymatic inactive, while LygF1d was found in two active site variants carrying alanine or glutamate, respectively. In vitro and in vivo infection by the intracellular bacterium Francisella noatunensis gave a significantly reduced LygF1a and b expression but increased expression of the LygF1c and d genes as did also the interferon gamma (IFNγ) cytokine. These results demonstrate a lack of c-type lysozyme that is unprecedented among vertebrates. Our results further indicate that serial gene duplications have produced multiple differentially regulated cod g-type lysozymes with specialised functions potentially compensating for the lack of c-type lysozymes. PMID:27324690

  9. Multiple specialised goose-type lysozymes potentially compensate for an exceptional lack of chicken-type lysozymes in Atlantic cod.

    PubMed

    Seppola, Marit; Bakkemo, Kathrine Ryvold; Mikkelsen, Helene; Myrnes, Bjørnar; Helland, Ronny; Irwin, David M; Nilsen, Inge W

    2016-01-01

    Previous analyses of the Atlantic cod genome showed unique combinations of lacking and expanded number of genes for the immune system. The present study examined lysozyme activity, lysozyme gene distribution and expression in cod. Enzymatic assays employing specific bacterial lysozyme inhibitors provided evidence for presence of g-type, but unexpectedly not for c-type lysozyme activity. Database homology searches failed to identify any c-type lysozyme gene in the cod genome or in expressed sequence tags from cod. In contrast, we identified four g-type lysozyme genes (LygF1a-d) constitutively expressed, although differentially, in all cod organs examined. The active site glutamate residue is replaced by alanine in LygF1a, thus making it enzymatic inactive, while LygF1d was found in two active site variants carrying alanine or glutamate, respectively. In vitro and in vivo infection by the intracellular bacterium Francisella noatunensis gave a significantly reduced LygF1a and b expression but increased expression of the LygF1c and d genes as did also the interferon gamma (IFNγ) cytokine. These results demonstrate a lack of c-type lysozyme that is unprecedented among vertebrates. Our results further indicate that serial gene duplications have produced multiple differentially regulated cod g-type lysozymes with specialised functions potentially compensating for the lack of c-type lysozymes. PMID:27324690

  10. Nitrogen removal from wastewater and bacterial diversity in activated sludge at different COD/N ratios and dissolved oxygen concentrations.

    PubMed

    Zielińska, Magdalena; Bernat, Katarzyna; Cydzik-Kwiatkowska, Agnieszka; Sobolewska, Joanna; Wojnowska-Baryła, Irena

    2012-01-01

    The impact of the organic carbon to nitrogen ratio (chemical oxygen demand (COD)/N) in wastewater and dissolved oxygen (DO) concentration on carbon and nitrogen removal efficiency, and total bacteria and ammonia-oxidizing bacteria (AOB) communities in activated sludge in constantly aerated sequencing batch reactors (SBRs) was determined. At DO of 0.5 and 1.5 mg O2/L during the aeration phase, the efficiency of ammonia oxidation exceeded 90%, with nitrates as the main product. Nitrification and denitrification achieved under the same operating conditions suggested the simultaneous course of these processes. The most effective nitrogen elimination (above 50%) was obtained at the COD/N ratio of 6.8 and DO of 0.5 mg O2/L. Total bacterial diversity was similar in all experimental series, however, for both COD/N ratios of 6.8 and 0.7, higher values were observed at DO of 0.5 mg O2/L. The diversity and abundance of AOB were higher in the reactors with the COD/N ratio of 0.7 in comparison with the reactors with the COD/N of 6.8. For both COD/N ratios applied, the AOB population was not affected by oxygen concentration. Amplicons with sequences indicating membership of the genus Nitrosospira were the determinants of variable technological conditions. PMID:23505865

  11. Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions.

    PubMed

    Solbakken, Monica H; Tørresen, Ole K; Nederbragt, Alexander J; Seppola, Marit; Gregers, Tone F; Jakobsen, Kjetill S; Jentoft, Sissel

    2016-01-01

    Genome sequencing of the teleost Atlantic cod demonstrated loss of the Major Histocompatibility Complex (MHC) class II, an extreme gene expansion of MHC class I and gene expansions and losses in the innate pattern recognition receptor (PRR) family of Toll-like receptors (TLR). In a comparative genomic setting, using an improved version of the genome, we characterize PRRs in Atlantic cod with emphasis on TLRs demonstrating the loss of TLR1/6, TLR2 and TLR5 and expansion of TLR7, TLR8, TLR9, TLR22 and TLR25. We find that Atlantic cod TLR expansions are strongly influenced by diversifying selection likely to increase the detectable ligand repertoire through neo- and subfunctionalization. Using RNAseq we find that Atlantic cod TLRs display likely tissue or developmental stage-specific expression patterns. In a broader perspective, a comprehensive vertebrate TLR phylogeny reveals that the Atlantic cod TLR repertoire is extreme with regards to losses and expansions compared to other teleosts. In addition we identify a substantial shift in TLR repertoires following the evolutionary transition from an aquatic vertebrate (fish) to a terrestrial (tetrapod) life style. Collectively, our findings provide new insight into the function and evolution of TLRs in Atlantic cod as well as the evolutionary history of vertebrate innate immunity. PMID:27126702

  12. Color removal from textile wastewater by using treated flute reed in a fixed bed column.

    PubMed

    Inthorn, Duangrat; Tipprasertsin, Kannika; Thiravetyan, Paitip; Khan, Eakalak

    2010-01-01

    This study investigated the ability of acid treated flute reed to adsorb color (dye) from synthetic reactive dye solutions, and actual dyeing and printing textile wastewaters in a laboratory scale fixed bed column. The effects of particle size, initial reactive dye concentration, bed depth and flow rate on adsorption performances were examined. The results from experiments with synthetic reactive dye solutions showed that the volume treated (until the breakthrough occurred) increased with decreasing particle size, influent reactive dye concentration and flow rate, and increasing bed depth. The bed depth service time model was suitable for describing the experimental data. The treated flute reed was able to reduce color efficiently, 99% for dyeing textile wastewater with ten adsorption columns in series and 78% for printing textile wastewater with a single adsorption column. The difference in the numbers of columns used for the two types of actual textile wastewater led to a substantial discrepancy in suspended solids removal, 99% for dyeing wastewater and 12% for printing wastewater. Similar pH and chemical oxygen demand (COD) results were obtained for the two types of textile wastewater. The acid pretreatment of flute reed resulted in dramatic decreases in pH after the adsorption and very acidic effluents (pH 3). Increases of COD after the adsorption due to organic leaching from the treated flute reed were observed. A different pretreatment method to solve these pH and COD problems is needed before flute reed can be used in practice. PMID:20390911

  13. Satellite monitoring temperature conditions spawning area of the Northeast Arctic cod in the Norwegian Sea and assessment its abundance

    NASA Astrophysics Data System (ADS)

    Vanyushin, George; Bulatova, Tatiana; Klochkov, Dmitriy; Troshkov, Anatoliy; Kruzhalov, Michail

    2013-04-01

    In this study, the attempt to consider the relationship between sea surface anomalies of temperature (SST anomalies °C) in spawning area of the Norwegian Arctic cod off the Lofoten islands in coastal zone of the Norwegian Sea and modern cod total stock biomass including forecasting assessment of future cod generation success. Continuous long-term database of the sea surface temperature (SST) was created on the NOAA satellites data. Mean monthly SST and SST anomalies are computed for the selected area on the basis of the weekly SST maps for the period of 1998-2012. These maps were plotted with the satellite SST data, as well as information of vessels, byoies and coastal stations. All data were classified by spawning seasons (March-April) and years. The results indicate that poor and low middle generations of cod (2001, 2006, 2007) occurred in years with negative or extremely high positive anomalies in the spawning area. The SST anomalies in years which were close to normal or some more normal significances provide conditions for appearance strong or very strong generations of cod (1998, 2000, 2002, 2004, 2005, 2006, 2008, 2009). Temperature conditions in concrete years influence on different indexes of cod directly. So, the mean temperature in spawning seasons in years 1999-2005 was ≈5,0°C and SST anomaly - +0,35°C, by the way average year significances indexes of cod were: total stock biomass - 1425,0 th.t., total spawning biomass - 460,0 th.t., recruitment (age 3+) - 535,0 mln. units and landings - 530,0 th.t. In spawning seasons 2006-2012 years the average data were following: mean SST ≈6,0°C, SST anomaly - +1,29°C, total stock biomass - 2185,0 th.t., total spawning biomass - 1211,0 th.t., recruitment (age 3+) - 821,0 mln. units and landings - 600,0 th.t. The SST and SST anomalies (the NOAA satellite data) characterize increase of decrease in input of warm Atlantic waters which form numerous eddies along the flows of the main warm currents thus creating

  14. Zonal Flows from Spontaneous Symmetry Breaking of Homogeneous Turbulence

    NASA Astrophysics Data System (ADS)

    Parker, Jeffrey; Krommes, John

    2013-10-01

    To study how zonal flows (ZF) arise, we examine one of the simplest possible models, the stochastically forced Hasegawa-Mima equation, which displays the bifurcation of steady ZFs from a state of homogeneous turbulence; thus a statistical treatment is required. Here an approach is adopted in which the ZFs are treated as mean fields that spontaneously break the background symmetry. The resulting inhomogeneous ensemble is treated self-consistently without assuming weak inhomogeneity. Closed statistical equations are obtained by ignoring the drift-wave self-interactions while fully retaining the drift-wave-ZF nonlinearities. We show that from the statistical point of view ZF generation can be understood as pattern formation. This leads to the surprising result that in a saturated turbulent state the ZF wavelength is not unique; a continuous band of ZF scales is allowed. Only those within a smaller sub-band are linearly stable. That stability is analyzed and the stability diagram in parameter space is calculated and successfully compared with simulations. The stability concept provides a way of interpreting the merging of zonal jets, a phenomenon commonly observed in observations and numerical studies. Work supported by U.S DOE Contract No DE-AC02-09CH11466 and by an NSF Graduate Research Fellowship.

  15. The Chemical Homogeneity of Open Clusters

    NASA Astrophysics Data System (ADS)

    Bovy, Jo

    2016-01-01

    Determining the level of chemical homogeneity in open clusters is of fundamental importance in the study of the evolution of star-forming clouds and that of the Galactic disk. Yet limiting the initial abundance spread in clusters has been hampered by difficulties in obtaining consistent spectroscopic abundances for different stellar types. Without reference to any specific model of stellar photospheres, a model for a homogeneous cluster is that it forms a one-dimensional sequence, with any differences between members due to variations in stellar mass and observational uncertainties. I present a novel method for investigating the abundance spread in open clusters that tests this one-dimensional hypothesis at the level of observed stellar spectra, rather than constraining homogeneity using derived abundances as is traditionally done. Using high-resolution APOGEE spectra for 49 giants in M67, NGC 6819, and NGC 2420 I demonstrate that these spectra form one-dimensional sequences for each cluster. With detailed forward modeling of the spectra and Approximate Bayesian Computation, I derive strong limits on the initial abundance spread of 15 elements: <0.01 (0.02) {dex} for C and Fe, ≲0.015 (0.03) {dex} for N, O, Mg, Si, and Ni, ≲0.02 (0.03) {dex} for Al, Ca, and Mn, and ≲0.03 (0.05) {dex} for Na, S, K, Ti, and V (at 68% and 95% confidence, respectively). The strong limits on C and O imply that no pollution by massive core-collapse supernovae occurred during star formation in open clusters, which, thus, need to form within ≲6 {Myr}. Further development of this and related techniques will bring the power of differential abundances to stars other than solar twins in large spectroscopic surveys and will help unravel the history of star formation and chemical enrichment in the Milky Way through chemical tagging.

  16. Sulfur isotope homogeneity of lunar mare basalts

    NASA Astrophysics Data System (ADS)

    Wing, Boswell A.; Farquhar, James

    2015-12-01

    We present a new set of high precision measurements of relative 33S/32S, 34S/32S, and 36S/32S values in lunar mare basalts. The measurements are referenced to the Vienna-Canyon Diablo Troilite (V-CDT) scale, on which the international reference material, IAEA-S-1, is characterized by δ33S = -0.061‰, δ34S ≡ -0.3‰ and δ36S = -1.27‰. The present dataset confirms that lunar mare basalts are characterized by a remarkable degree of sulfur isotopic homogeneity, with most new and published SF6-based sulfur isotope measurements consistent with a single mass-dependent mean isotopic composition of δ34S = 0.58 ± 0.05‰, Δ33S = 0.008 ± 0.006‰, and Δ36S = 0.2 ± 0.2‰, relative to V-CDT, where the uncertainties are quoted as 99% confidence intervals on the mean. This homogeneity allows identification of a single sample (12022, 281) with an apparent 33S enrichment, possibly reflecting cosmic-ray-induced spallation reactions. It also reveals that some mare basalts have slightly lower δ34S values than the population mean, which is consistent with sulfur loss from a reduced basaltic melt prior to eruption at the lunar surface. Both the sulfur isotope homogeneity of the lunar mare basalts and the predicted sensitivity of sulfur isotopes to vaporization-driven fractionation suggest that less than ≈1-10% of lunar sulfur was lost after a potential moon-forming impact event.

  17. Compressible homogeneous shear: Simulation and modeling

    NASA Technical Reports Server (NTRS)

    Sarkar, S.; Erlebacher, G.; Hussaini, M. Y.

    1992-01-01

    Compressibility effects were studied on turbulence by direct numerical simulation of homogeneous shear flow. A primary observation is that the growth of the turbulent kinetic energy decreases with increasing turbulent Mach number. The sinks provided by compressible dissipation and the pressure dilatation, along with reduced Reynolds shear stress, are shown to contribute to the reduced growth of kinetic energy. Models are proposed for these dilatational terms and verified by direct comparison with the simulations. The differences between the incompressible and compressible fields are brought out by the examination of spectra, statistical moments, and structure of the rate of strain tensor.

  18. Multifractal spectra in homogeneous shear flow

    NASA Technical Reports Server (NTRS)

    Deane, A. E.; Keefe, L. R.

    1988-01-01

    Employing numerical simulations of 3-D homogeneous shear flow, the associated multifractal spectra of the energy dissipation, scalar dissipation and vorticity fields were calculated. The results for (128) cubed simulations of this flow, and those obtained in recent experiments that analyzed 1- and 2-D intersections of atmospheric and laboratory flows, are in some agreement. A two-scale Cantor set model of the energy cascade process which describes the experimental results from 1-D intersections quite well, describes the 3-D results only marginally.

  19. Einstein billiards and spatially homogeneous cosmological models

    NASA Astrophysics Data System (ADS)

    de Buyl, Sophie; Pinardi, Gaïa; Schomblond, Christiane

    2003-12-01

    In this paper, we analyse the Einstein and Einstein Maxwell billiards for all spatially homogeneous cosmological models corresponding to three- and four-dimensional real unimodular Lie algebras and provide a list of those models which are chaotic in the Belinskii, Khalatnikov and Lifschitz (BKL) limit. Through the billiard picture, we confirm that, in D = 5 spacetime dimensions, chaos is present if off-diagonal metric elements are kept: the finite volume billiards can be identified with the fundamental Weyl chambers of hyperbolic Kac Moody algebras. The most generic cases bring in the same algebras as in the inhomogeneous case, but other algebras appear through special initial conditions.

  20. Homogeneous system UTBLI for 1964 - 1986.

    NASA Astrophysics Data System (ADS)

    Jovanović, B.; Durović, L.; Jovanović, M.

    1993-09-01

    Homogeneous results of universal time determinations derived from the observations by the Transit Instrument of Belgrade Astronomical Observatory (BLI) for the interval 1964 - 1986 are presented. They were prepared in accordance with IERS standards and listed in a table. In addition, using the smoothed values of monthly averaged UT1BLI-UT1BIH, an analysis on the variation of the local system UT1BLI is carried out, and also, systematic deviations after the adopted BIH model are shown. Undoubtedly, there exists a significant 11 - 14 year periodic change of UT1BLI system.

  1. Isotropic homogeneous universe with viscous fluid

    SciTech Connect

    Santos, N.O.; Dias, R.S.; Banerjee, A.

    1985-04-01

    Exact solutions are obtained for the isotropic homogeneous cosmological model with viscous fluid. The fluid has only bulk viscosity and the viscosity coefficient is taken to be a power function of the mass density. The equation of state assumed obeys a linear relation between mass density and pressure. The models satisfying Hawking's energy conditions are discussed. Murphy's model is only a special case of this general set of solutions and it is shown that Murphy's conclusion that the introduciton of bulk viscosity can avoid the occurrence of space-time singularity at finite past is not, in general, valid.

  2. Mirror Symmetry for Quasi-Homogeneous Singularities

    NASA Astrophysics Data System (ADS)

    Rathnakumara, Himal; Jarvis, Tyler

    2008-10-01

    I will present an introduction to mirror symmetry in the context of string theory. Then I will describe an instance of mirror symmetry for singularties defined by quasi-homogeneous polynomials in weighted projective spaces. Milnor rings and the FJRW (Fan-Jarvis-Ruan-Witten) rings associated with these singularities and their relation to the Landua-Ginzburg A model and the Landua-Ginzburg B model will be explained. Results of the calculations for certain singularities for which the mirror symmetry conjecture has been verified will be presented.

  3. Heterogeneity versus homogeneity of multiple sclerosis

    PubMed Central

    Sato, Fumitaka; Martinez, Nicholas E; Omura, Seiichi; Tsunoda, Ikuo

    2011-01-01

    The 10th International Congress of Neuroimmunology, including the 10th European School of Neuroimmunology Course, was held by the International Society of Neuroimmunology in Sitges (Barcelona, Spain) on 26–30 October 2010. The conference covered a wide spectrum of issues and challenges in both basic science and clinical aspects of neuroimmunology. Data and ideas were shared through a variety of programs, including review talks and poster sessions. One of the topics of the congress was whether multiple sclerosis is a homogenous or heterogenous disease, clinically and pathologically, throughout its course. PMID:21426254

  4. Local structures of homogeneous Hall MHD turbulence

    NASA Astrophysics Data System (ADS)

    Miura, H.; Araki, K.

    2011-12-01

    Local structures of decaying homogeneous and isotropic Hall MHD turbulence are studied by means of direct numerical simulations. Regions of strong vorticity and strong current density in Hall MHD turbulence are compared to those of single-fluid MHD turbulence. An analysis by the use of a low-pass filter reveals that the introduction of the Hall term can modify not only small-scale structures of the current density but also structures of the vorticity field, especially at the scales smaller than the ion skin depth.

  5. Homogeneous and hypersurface-homogeneous shear-free perfect fluids ingeneral relativity.

    NASA Astrophysics Data System (ADS)

    Collins, C. B.

    1988-08-01

    Shear-free, general-relativistic perfect fluids are investigated in the case where they are either homogeneous or hypersurface-homogeneous (and, in particular, spatially homogeneous). It is assumed that the energy density μ and the presurep of the fluid are related by a barotropic equation of statep = p(μ), where μ +p ≠ 0. Under such circumstances, it follows that either the fluid's volume expansion rate θ or the fluid's vorticity (i.e., rotation) ω must vanish. In the homogeneous case, this leads to only two possibilities: either ω = θ = 0 (the Einstein static solution), or ω ≠ 0,θ = 0 (the Gödel solution). In the hypersurface-homogeneous case, the situation is more complicated: either ω = 0, θ≠ 0 (as exemplified,inter alia, by the Friedmann-Robertson-Walker models), or ω ≠ 0, θ = 0 (which pertains, for example, in general stationary cylindrically symmetric fluids with rigid rotation, or ω = θ = 0 (as occurs for static spherically symmetric solutions). Each possibility is further subdivided in an invariant way, and related to the studies of other authors, thereby unifying and extending these earlier works.

  6. Reactive-transport simulation of phosphorus in the sewage plume at the Massachusetts Military Reservation, Cape Cod, Massachusetts

    USGS Publications Warehouse

    Parkhurst, David L.; Stollenwerk, Kenneth G.; Colman, John A.

    2003-01-01

    The subsurface transport of phosphorus introduced by the disposal of treated sewage effluent to ground-infiltration disposal beds at the Massachusetts Military Reservation on western Cape Cod was simulated with a three-dimensional reactive-transport model. The simulations were used to estimate the load of phosphorus transported to Ashumet Pond during operation of the sewage-treatment plant?from 1936 to 1995?and for 60 years following cessation of sewage disposal. The model accounted for spatial and temporal changes in water discharge from the sewage-treatment plant, ground-water flow, transport of associated chemical constituents, and a set of chemical reactions, including phosphorus sorption on aquifer materials, dissolution and precipitation of iron- and manganese-oxyhydroxide and iron phosphate minerals, organic carbon sorption and decomposition, cation sorption, and irreversible denitrification. The flow and transport in the aquifer were simulated by using parameters consistent with those used in previous flow models of this area of Cape Cod, except that numerical dispersion was much larger than the physical dispersion estimated in previous studies. Sorption parameters were fit to data derived from phosphorus sorption and desorption laboratory column experiments. Rates of organic carbon decomposition were adjusted to match the location of iron concentrations in an anoxic iron zone within the sewage plume. The sensitivity of the simulated load of phosphorus transported to Ashumet Pond was calculated for a variety of processes and input parameters. Model limitations included large uncertainties associated with the loading of the sewage beds, the flow system, and the chemistry and sorption characteristics in the aquifer. The results of current model simulations indicate a small load of phosphorus transported to Ashumet Pond during 1965?85, but this small load was particularly sensitive to model parameters that specify flow conditions and the chemical process by

  7. Cape Cod

    Atmospheric Science Data Center

    2014-05-15

    ... 3000 shipwrecks on the Cape, mainly along the treacherous outer shore between Provincetown located at the "fist" of the Cape and Chatham ... D.C. The Terra spacecraft is managed by NASA's Goddard Space Flight Center, Greenbelt, MD. The MISR data were obtained from the NASA ...

  8. Syntheses, spectroscopy, X-ray and DFT/TDDFT investigations of Rh(η4-cod)-enantiopure aminocarboxylate complexes

    NASA Astrophysics Data System (ADS)

    Enamullah, Mohammed; Islam, Mohammad Khairul; Halim, Mohammad Abdul; Janiak, Christoph

    2015-11-01

    The titled Rh(η4-cod)-enantiopure aminocarboxylate complexes, [Rh(η4-cod) (AA)] {cod = cycloocta-1,5-diene; AA = L-prolinato (1) and D-4-hydroxy-phenylglycinato (2)}, are synthesized from the reaction of enantiopure aminocarboxylate with [Rh(η4-cod) (acetate)]2. Polarimetric measurements confirm the enantiopurity or very similar enantiomeric excess of the complexes in chloroform. Electronic spectra in different solvents exhibit a negative solvatochromism in the solvents of increasing polarity or acceptor number. DSC analyses show an exothermic peak at 269 °C (ΔH = -72.42 kJ M-1) for 2, corresponding to an irreversible phase transformation. Cyclic voltammograms reveal a quasi-reversible one electron transfer for [Rh(η4-cod) (L-prolinate)]/[Rh(η4-cod) (L-prolinate)]+ couple in acetonitrile. Electronic spectra calculated by TDDFT reveal the bands at relatively lower energy (>230 nm) due to combined d-d, MLCT and LLCT transitions, while the bands at higher energy only for LLCT, which are very similar to the experimental results. X-ray structure demonstrates a distorted square-planar geometry with N,O-chelation of the L-prolinate ligand to the Rh(η4-cod)-fragment in 1. The crystal packing is evidenced by charge-assisted intermolecular N-H···O and C-H···O interactions to the non-coordinated carboxylate oxygen atom. Hydrogen bonding leads to the formation of supramolecular chains along the a direction of the unit cell. The interchain packing is governed mostly by van-der-Waals forces and reminiscent of a 'herring-bone' packing.

  9. Does condition of Atlantic cod (Gadus morhua) have a greater impact upon swimming performance at Ucrit or sprint speeds?

    PubMed

    Martínez, M; Bédard, M; Dutil, J-D; Guderley, H

    2004-08-01

    To compare the sensitivity of sprint and critical (Ucrit) swimming speeds to the condition of Atlantic cod (Gadus morhua) and to identify the best anatomic, behavioural and biochemical correlates of these types of swimming, we established two groups of cod that were fed or starved for 12 weeks. We evaluated sprint swimming and Ucrit performance as well as the speed at which repeated burst-coast movements began in the Ucrit test before measuring the metabolic capacities of red and white muscle sampled caudally, centrally and rostrally and the anatomic characteristics of the cod. White muscle lactate was measured directly after the Ucrit test. As expected, the twofold difference in Fulton's condition factor (0.5+/-0.04 for starved and 1.0+/-0.1 for fed cod) was accompanied by large differences in the anatomic and biochemical parameters measured. Despite the relative sparing of muscle aerobic capacity during starvation and despite the greater use of oxidative fibres during Ucrit compared with sprint swimming, these types of swimming differed by much the same extent between starved and fed cod. In the Ucrit tests, white muscle lactate levels and lactate accumulation per burst-coast movement were considerably higher in fed than starved cod, suggesting more intensive use of fast muscle fibres in cod in good condition. Multiple regression analysis indicated strong correlations between Ucrit, the speed at which regular burst-coasting began and the activity of pyruvate dehydrogenase (PDH) in red muscle (both caudal and central positions). PDH activity may limit the rate of oxidative ATP production by red muscle. The activity of cytochrome c oxidase in rostral white muscle was the strongest correlate of sprint swimming, suggesting that aerobic preparation of white muscle facilitates rapid contraction. The correlation between Ucrit and sprint swimming was weak, perhaps due to inter-individual differences in sensitivity during sprint tests. PMID:15277553

  10. The Statistical Mechanics of Ideal Homogeneous Turbulence

    NASA Technical Reports Server (NTRS)

    Shebalin, John V.

    2002-01-01

    Plasmas, such as those found in the space environment or in plasma confinement devices, are often modeled as electrically conducting fluids. When fluids and plasmas are energetically stirred, regions of highly nonlinear, chaotic behavior known as turbulence arise. Understanding the fundamental nature of turbulence is a long-standing theoretical challenge. The present work describes a statistical theory concerning a certain class of nonlinear, finite dimensional, dynamical models of turbulence. These models arise when the partial differential equations describing incompressible, ideal (i.e., nondissipative) homogeneous fluid and magnetofluid (i.e., plasma) turbulence are Fourier transformed into a very large set of ordinary differential equations. These equations define a divergenceless flow in a high-dimensional phase space, which allows for the existence of a Liouville theorem, guaranteeing a distribution function based on constants of the motion (integral invariants). The novelty of these particular dynamical systems is that there are integral invariants other than the energy, and that some of these invariants behave like pseudoscalars under two of the discrete symmetry transformations of physics, parity, and charge conjugation. In this work the 'rugged invariants' of ideal homogeneous turbulence are shown to be the only significant scalar and pseudoscalar invariants. The discovery that pseudoscalar invariants cause symmetries of the original equations to be dynamically broken and induce a nonergodic structure on the associated phase space is the primary result presented here. Applicability of this result to dissipative turbulence is also discussed.

  11. Homogenization in micro-magneto-mechanics

    NASA Astrophysics Data System (ADS)

    Sridhar, A.; Keip, M.-A.; Miehe, C.

    2016-07-01

    Ferromagnetic materials are characterized by a heterogeneous micro-structure that can be altered by external magnetic and mechanical stimuli. The understanding and the description of the micro-structure evolution is of particular importance for the design and the analysis of smart materials with magneto-mechanical coupling. The macroscopic response of the material results from complex magneto-mechanical interactions occurring on smaller length scales, which are driven by magnetization reorientation and associated magnetic domain wall motions. The aim of this work is to directly base the description of the macroscopic magneto-mechanical material behavior on the micro-magnetic domain evolution. This will be realized by the incorporation of a ferromagnetic phase-field formulation into a macroscopic Boltzmann continuum by the use of computational homogenization. The transition conditions between the two scales are obtained via rigorous exploitation of rate-type and incremental variational principles, which incorporate an extended version of the classical Hill-Mandel macro-homogeneity condition covering the phase field on the micro-scale. An efficient two-scale computational scenario is developed based on an operator splitting scheme that includes a predictor for the magnetization on the micro-scale. Two- and three-dimensional numerical simulations demonstrate the performance of the method. They investigate micro-magnetic domain evolution driven by macroscopic fields as well as the associated overall hysteretic response of ferromagnetic solids.

  12. Emergence of Leadership within a Homogeneous Group

    PubMed Central

    Eskridge, Brent E.; Valle, Elizabeth; Schlupp, Ingo

    2015-01-01

    Large scale coordination without dominant, consistent leadership is frequent in nature. How individuals emerge from within the group as leaders, however transitory this position may be, has become an increasingly common question asked. This question is further complicated by the fact that in many of these aggregations, differences between individuals are minor and the group is largely considered to be homogeneous. In the simulations presented here, we investigate the emergence of leadership in the extreme situation in which all individuals are initially identical. Using a mathematical model developed using observations of natural systems, we show that the addition of a simple concept of leadership tendencies which is inspired by observations of natural systems and is affected by experience can produce distinct leaders and followers using a nonlinear feedback loop. Most importantly, our results show that small differences in experience can promote the rapid emergence of stable roles for leaders and followers. Our findings have implications for our understanding of adaptive behaviors in initially homogeneous groups, the role experience can play in shaping leadership tendencies, and the use of self-assessment in adapting behavior and, ultimately, self-role-assignment. PMID:26226381

  13. Emergence of Leadership within a Homogeneous Group.

    PubMed

    Eskridge, Brent E; Valle, Elizabeth; Schlupp, Ingo

    2015-01-01

    Large scale coordination without dominant, consistent leadership is frequent in nature. How individuals emerge from within the group as leaders, however transitory this position may be, has become an increasingly common question asked. This question is further complicated by the fact that in many of these aggregations, differences between individuals are minor and the group is largely considered to be homogeneous. In the simulations presented here, we investigate the emergence of leadership in the extreme situation in which all individuals are initially identical. Using a mathematical model developed using observations of natural systems, we show that the addition of a simple concept of leadership tendencies which is inspired by observations of natural systems and is affected by experience can produce distinct leaders and followers using a nonlinear feedback loop. Most importantly, our results show that small differences in experience can promote the rapid emergence of stable roles for leaders and followers. Our findings have implications for our understanding of adaptive behaviors in initially homogeneous groups, the role experience can play in shaping leadership tendencies, and the use of self-assessment in adapting behavior and, ultimately, self-role-assignment. PMID:26226381

  14. Si isotope homogeneity of the solar nebula

    SciTech Connect

    Pringle, Emily A.; Savage, Paul S.; Moynier, Frédéric; Jackson, Matthew G.; Barrat, Jean-Alix E-mail: savage@levee.wustl.edu E-mail: moynier@ipgp.fr E-mail: Jean-Alix.Barrat@univ-brest.fr

    2013-12-20

    The presence or absence of variations in the mass-independent abundances of Si isotopes in bulk meteorites provides important clues concerning the evolution of the early solar system. No Si isotopic anomalies have been found within the level of analytical precision of 15 ppm in {sup 29}Si/{sup 28}Si across a wide range of inner solar system materials, including terrestrial basalts, chondrites, and achondrites. A possible exception is the angrites, which may exhibit small excesses of {sup 29}Si. However, the general absence of anomalies suggests that primitive meteorites and differentiated planetesimals formed in a reservoir that was isotopically homogenous with respect to Si. Furthermore, the lack of resolvable anomalies in the calcium-aluminum-rich inclusion measured here suggests that any nucleosynthetic anomalies in Si isotopes were erased through mixing in the solar nebula prior to the formation of refractory solids. The homogeneity exhibited by Si isotopes may have implications for the distribution of Mg isotopes in the solar nebula. Based on supernova nucleosynthetic yield calculations, the expected magnitude of heavy-isotope overabundance is larger for Si than for Mg, suggesting that any potential Mg heterogeneity, if present, exists below the 15 ppm level.

  15. On shearing fluids with homogeneous densities

    NASA Astrophysics Data System (ADS)

    Srivastava, D. C.; Srivastava, V. C.; Kumar, Rajesh

    2016-06-01

    In this paper, we study shearing spherically symmetric homogeneous density fluids in comoving coordinates. It is found that the expansion of the four-velocity of a perfect fluid is homogeneous, whereas its shear is generated by an arbitrary function of time M( t), related to the mass function of the distribution. This function is found to bear a functional relationship with density. The field equations are reduced to two coupled first order ordinary differential equations for the metric coefficients g_{11} and g_{22}. We have explored a class of solutions assuming that M is a linear function of the density. This class embodies, as a subcase, the complete class of shear-free solutions. We have discussed the off quoted work of Kustaanheimo (Comment Phys Math XIII:12, 1, 1947) and have noted that it deals with shear-free fluids having anisotropic pressure. It is shown that the anisotropy of the fluid is characterized by an arbitrary function of time. We have discussed some issues of historical priorities and credentials related to shear-free solutions. Recent controversial claims by Mitra (Astrophys Space Sci 333:351, 2011 and Gravit Cosmol 18:17, 2012) have also been addressed. We found that the singularity and the shearing motion of the fluid are closely related. Hence, there is a need for fresh look to the solutions obtained earlier in comoving coordinates.

  16. Homogeneous cooling of mixtures of particle shapes

    NASA Astrophysics Data System (ADS)

    Hidalgo, R. C.; Serero, D.; Pöschel, T.

    2016-07-01

    In this work, we examine theoretically the cooling dynamics of binary mixtures of spheres and rods. To this end, we introduce a generalized mean field analytical theory, which describes the free cooling behavior of the mixture. The relevant characteristic time scale for the cooling process is derived, depending on the mixture composition and the aspect ratio of the rods. We simulate mixtures of spherocylinders and spheres using a molecular dynamics algorithm implemented on graphics processing unit (GPU) architecture. We systematically study mixtures composed of spheres and rods with several aspect ratios and varying the mixture composition. A homogeneous cooling state, where the time dependence of the system's intensive variables occurs only through a global granular temperature, is identified. We find cooling dynamics in excellent agreement with Haff's law, when using an adequate time scale. Using the scaling properties of the homogeneous cooling dynamics, we estimated numerically the efficiency of the energy interchange between rotational and translational degrees of freedom for collisions between spheres and rods.

  17. The effects of pre-salting methods on salt and water distribution of heavily salted cod, as analyzed by (1)H and (23)Na MRI, (23)Na NMR, low-field NMR and physicochemical analysis.

    PubMed

    Gudjónsdóttir, María; Traoré, Amidou; Jónsson, Ásbjörn; Karlsdóttir, Magnea Gudrún; Arason, Sigurjón

    2015-12-01

    The effect of different pre-salting methods (brine injection with salt with/without polyphosphates, brining and pickling) on the water and salt distribution in dry salted Atlantic cod (Gadus morhua) fillets was studied with proton and sodium NMR and MRI methods, supported by physicochemical analysis of salt and water content as well as water holding capacity. The study indicated that double head brine injection with salt and phosphates lead to the least heterogeneous water distribution, while pickle salting had the least heterogeneous salt distribution. Fillets from all treatments contained spots with unsaturated brine, increasing the risk of microbial denaturation of the fillets during storage. Since a homogeneous water and salt distribution was not achieved with the studied pre-salting methods, further optimizations of the salting process, including the pre-salting and dry salting steps, must be made in the future. PMID:26041245

  18. Modeling simultaneous carbon and nitrogen removal (SCNR) in anaerobic/anoxic reactor treating domestic wastewater.

    PubMed

    Mendes, Carlos; Esquerre, Karla; Queiroz, Luciano Matos

    2016-07-15

    This paper presents a mathematical model based on the Anaerobic Digestion Model No. 1 (ADM1) to simulate the effects of nitrate concentration and hydraulic retention time (HRT) on the simultaneous carbon and nitrogen removal (SCNR) in anaerobic/anoxic reactor treating domestic wastewater. The model was calibrated using previously published experimental data obtained from anaerobic batch tests for different COD/ [Formula: see text] ratios. Model simulations were performed to predict the SCNR in a completely mixed reactor (CSTR) operating under mesophilic conditions (35 °C). Six different scenarios were evaluated to investigate the performance of the SCNR based on typical influent characteristics of domestic wastewater. The variables analyzed were chemical oxygen demand (COD) removal, nitrate concentration, methane production, nitrogen gas, volatile fatty acids (VFA) concentration, pH and percentage of COD used by the denitrifying and methanogenic microorganisms. The HRT was decreased stepwise from 15 to 4 h. The results indicate that Scenario (S5) with a COD/ [Formula: see text] ratio equal to 10 and an HRT equal to 15 h ensures the occurrence of the stable SCNR. Furthermore, the accumulation of denitrification intermediates and a significant reduction in the biogas production when the organic matter is limited was verified. PMID:27088208

  19. Anodic oxidation of coke oven wastewater: Multiparameter optimization for simultaneous removal of cyanide, COD and phenol.

    PubMed

    Sasidharan Pillai, Indu M; Gupta, Ashok K

    2016-07-01

    Anodic oxidation of industrial wastewater from a coke oven plant having cyanide including thiocyanate (280 mg L(-1)), chemical oxygen demand (COD - 1520 mg L(-1)) and phenol (900 mg L(-1)) was carried out using a novel PbO2 anode. From univariate optimization study, low NaCl concentration, acidic pH, high current density and temperature were found beneficial for the oxidation. Multivariate optimization was performed with cyanide including thiocyanate, COD and phenol removal efficiencies as a function of changes in initial pH, NaCl concentration and current density using Box-Behnken experimental design. Optimization was performed for maximizing the removal efficiencies of these three parameters simultaneously. The optimum condition was obtained as initial pH 3.95, NaCl as 1 g L(-1) and current density of 6.7 mA cm(-2), for which the predicted removal efficiencies were 99.6%, 86.7% and 99.7% for cyanide including thiocyanate, COD and phenol respectively. It was in agreement with the values obtained experimentally as 99.1%, 85.2% and 99.7% respectively for these parameters. The optimum conditions with initial pH constrained to a range of 6-8 was initial pH 6, NaCl as 1.31 g L(-1) and current density as 6.7 mA cm(-2). The predicted removal efficiencies were 99%, 86.7% and 99.6% for the three parameters. The efficiencies obtained experimentally were in agreement at 99%, 87.8% and 99.6% respectively. The cost of operation for degradation at optimum conditions was calculated as 21.4 USD m(-3). PMID:27039363

  20. Two adjacent inversions maintain genomic differentiation between migratory and stationary ecotypes of Atlantic cod.

    PubMed

    Kirubakaran, Tina Graceline; Grove, Harald; Kent, Matthew P; Sandve, Simen R; Baranski, Matthew; Nome, Torfinn; De Rosa, Maria Cristina; Righino, Benedetta; Johansen, Torild; Otterå, Håkon; Sonesson, Anna; Lien, Sigbjørn; Andersen, Øivind

    2016-05-01

    Atlantic cod is composed of multiple migratory and stationary populations widely distributed in the North Atlantic Ocean. The Northeast Arctic cod (NEAC) population in the Barents Sea undertakes annual spawning migrations to the northern Norwegian coast. Although spawning occurs sympatrically with the stationary Norwegian coastal cod (NCC), phenotypic and genetic differences between NEAC and NCC are maintained. In this study, we resolve the enigma by revealing the mechanisms underlying these differences. Extended linkage disequilibrium (LD) and population divergence were demonstrated in a 17.4-Mb region on linkage group 1 (LG1) based on genotypes of 494 SNPs from 192 parents of farmed families of NEAC, NCC or NEACxNCC crosses. Linkage analyses revealed two adjacent inversions within this region that repress meiotic recombination in NEACxNCC crosses. We identified a NEAC-specific haplotype consisting of 186 SNPs that was fixed in NEAC sampled from the Barents Sea, but segregating under Hardy-Weinberg equilibrium in eight NCC stocks. Comparative genomic analyses determine the NEAC configuration of the inversions to be the derived state and date it to ~1.6-2.0 Mya. The haplotype block harbours 763 genes, including candidates regulating swim bladder pressure, haem synthesis and skeletal muscle organization conferring adaptation to long-distance migrations and vertical movements down to large depths. Our results suggest that the migratory ecotype experiences strong directional selection for the two adjacent inversions on LG1. Despite interbreeding between NEAC and NCC, the inversions are maintaining genetic differentiation, and we hypothesize the co-occurrence of multiple adaptive alleles forming a 'supergene' in the NEAC population. PMID:26923504

  1. Constant proportion harvest policies: dynamic implications in the Pacific halibut and Atlantic cod fisheries.

    PubMed

    Yakubu, Abdul-Aziz; Li, Nianpeng; Conrad, Jon M; Zeeman, Mary-Lou

    2011-07-01

    Overfishing, pollution and other environmental factors have greatly reduced commercially valuable stocks of fish. In a 2006 Science article, a group of ecologists and economists warned that the world may run out of seafood from natural stocks if overfishing continues at current rates. In this paper, we explore the interaction between a constant proportion harvest policy and recruitment dynamics. We examine the discrete-time constant proportion harvest policy discussed in Ang et al. (2009) and then expand the framework to include stock-recruitment functions that are compensatory and overcompensatory, both with and without the Allee effect. We focus on constant proportion policies (CPPs). CPPs have the potential to stabilize complex overcompensatory stock dynamics, with or without the Allee effect, provided the rates of harvest stay below a threshold. If that threshold is exceeded, CPPs are known to result in the sudden collapse of a fish stock when stock recruitment exhibits the Allee effect. In case studies, we analyze CPPs as they might be applied to Gulf of Alaska Pacific halibut fishery and the Georges Bank Atlantic cod fishery based on harvest rates from 1975 to 2007. The best fit models suggest that, under high fishing mortalities, the halibut fishery is vulnerable to sudden population collapse while the cod fishery is vulnerable to steady decline to zero. The models also suggest that CPP with mean harvesting levels from the last 30 years can be effective at preventing collapse in the halibut fishery, but these same policies would lead to steady decline to zero in the Atlantic cod fishery. We observe that the likelihood of collapse in both fisheries increases with increased stochasticity (for example, weather variability) as predicted by models of global climate change. PMID:21549719

  2. Recruitment Variability in North Atlantic Cod and Match-Mismatch Dynamics

    PubMed Central

    Kristiansen, Trond; Drinkwater, Kenneth F.; Lough, R. Gregory; Sundby, Svein

    2011-01-01

    Background Fisheries exploitation, habitat destruction, and climate are important drivers of variability in recruitment success. Understanding variability in recruitment can reveal mechanisms behind widespread decline in the abundance of key species in marine and terrestrial ecosystems. For fish populations, the match-mismatch theory hypothesizes that successful recruitment is a function of the timing and duration of larval fish abundance and prey availability. However, the underlying mechanisms of match-mismatch dynamics and the factors driving spatial differences between high and low recruitment remain poorly understood. Methodology/Principal Findings We used empirical observations of larval fish abundance, a mechanistic individual-based model, and a reanalysis of ocean temperature data from 1960 to 2002 to estimate the survival of larval cod (Gadus morhua). From the model, we quantified how survival rates changed during the warmest and coldest years at four important cod spawning sites in the North Atlantic. The modeled difference in survival probability was not large for any given month between cold or warm years. However, the cumulative effect of higher growth rates and survival through the entire spawning season in warm years was substantial with 308%, 385%, 154%, and 175% increases in survival for Georges Bank, Iceland, North Sea, and Lofoten cod stocks, respectively. We also found that the importance of match-mismatch dynamics generally increased with latitude. Conclusions/Significance Our analyses indicate that a key factor for enhancing survival is the duration of the overlap between larval and prey abundance and not the actual timing of the peak abundance. During warm years, the duration of the overlap between larval fish and their prey is prolonged due to an early onset of the spring bloom. This prolonged season enhances cumulative growth and survival, leading to a greater number of large individuals with enhanced potential for survival to recruitment

  3. Synergies between climate and management for Atlantic cod fisheries at high latitudes

    PubMed Central

    Kjesbu, Olav Sigurd; Bogstad, Bjarte; Devine, Jennifer A.; Gjøsæter, Harald; Howell, Daniel; Ingvaldsen, Randi B.; Nash, Richard D. M.; Skjæraasen, Jon Egil

    2014-01-01

    The widespread depletion of commercially exploited marine living resources is often seen as a general failure of management and results in criticism of contemporary management procedures. When populations show dramatic and positive changes in population size, this invariably leads to questions about whether favorable climatic conditions or good management (or both) were responsible. The Barents Sea cod (Gadus morhua) stock has recently increased markedly and the spawning stock biomass is now at an unprecedented high. We identify the crucial social and environmental factors that made this unique growth possible. The relationship between vital rates of Barents Sea cod stock productivity (recruitment, growth, and mortality) and environment is investigated, followed by simulations of population size under different management scenarios. We show that the recent sustained reduction in fishing mortality, facilitated by the implementation of a “harvest control rule,” was essential to the increase in population size. Simulations show that a drastic reduction in fishing mortality has resulted in a doubling of the total population biomass compared with that expected under the former management regime. However, management alone was not solely responsible. We document that prevailing climate, operating through several mechanistic links, positively reinforced management actions. Heightened temperature resulted in an increase in the extent of the suitable feeding area for Barents Sea cod, likely offering a release from density-dependent effects (for example, food competition and cannibalism) through prolonged overlap with prey and improved adult stock productivity. Management and climate may thus interact to give a positive outlook for exploited high-latitude marine resources. PMID:24550465

  4. Heteroplasmy of short tandem repeats in mitochondrial DNA of Atlantic cod, Gadus morhua.

    PubMed

    Arnason, E; Rand, D M

    1992-09-01

    The mitochondrial DNA of the Atlantic cod (Gadus morhua) contains a tandem array of 40-bp repeats in the D-loop region of the molecule. Variation among molecules in the copy number of these repeats results in mtDNA length variation and heteroplasmy (the presence of more than one form of mtDNA in an individual). In a sample of fish collected from different localities around Iceland and off George's Bank, each individual was heteroplasmic for two or more mtDNAs ranging in repeat copy number from two (common) to six (rare). An earlier report on mtDNA heteroplasmy in sturgeon (Acipenser transmontanus) presented a competitive displacement model for length mutations in mtDNAs containing tandem arrays and the cod data deviate from this model. Depending on the nature of putative secondary structures and the location of D-loop strand termination, additional mechanisms of length mutation may be needed to explain the range of mtDNA length variants maintained in these populations. The balance between genetic drift and mutation in maintaining this length polymorphism is estimated through a hierarchical analysis of diversity of mtDNA length variation in the Iceland samples. Eighty percent of the diversity lies within individuals, 8% among individuals and 12% among localities. An estimate of theta = 2N(eo) mu greater than 1 indicates that this system is characterized by a high mutation rate and is governed primarily by deterministic dynamics. The sequences of repeat arrays from fish collected in Norway, Iceland and George's Bank show no nucleotide variation suggesting that there is very little substructuring to the North Atlantic cod population. PMID:1356884

  5. Optimization study for Pb(II) and COD sequestration by consortium of sulphate-reducing bacteria

    NASA Astrophysics Data System (ADS)

    Verma, Anamika; Bishnoi, Narsi R.; Gupta, Asha

    2016-04-01

    In this study, initial minimum inhibitory concentration (MIC) of Pb(II) ions was analysed to check optimum concentration of Pb(II) ions at which the growth of sulphate-reducing consortium (SRC) was found to be maximum. 80 ppm of Pb(II) ions was investigated as minimum inhibitory concentration for SRC. Influence of electron donors such as lactose, sucrose, glucose and sodium lactate was examined to investigate best carbon source for growth and activity of sulphate-reducing bacteria. Sodium lactate was found to be the prime carbon source for SRC. Later optimization of various parameters was executed using Box-Behnken design model of response surface methodology to explore the effectiveness of three independent operating variables, namely, pH (5.0-9.0), temperature (32-42 °C) and time (5.0-9.0 days), on dependent variables, i.e. protein content, precipitation of Pb(II) ions, and removal of COD by SRC biomass. Maximum removal of COD and Pb(II) was observed to be 91 and 98 %, respectively, at pH 7.0 and temperature 37 °C and incubation time 7 days. According to response surface analysis and analysis of variance, the experimental data were perfectly fitted to the quadratic model, and the interactive influence of pH, temperature and time on Pb(II) and COD removal was highly significant. A high regression coefficient between the variables and response (r 2 = 0.9974) corroborate eminent evaluation of experimental data by second-order polynomial regression model. SEM and Fourier transform infrared analysis was performed to investigate morphology of PbS precipitates, sorption mechanism and involved functional groups in metal-free and metal-loaded biomass of SRC for Pb(II) binding.

  6. Fishing cod in the Baltic Sea - Gambling with the ecosystem services

    NASA Astrophysics Data System (ADS)

    Björkman, Sven; Nordlöf, Anders

    2014-05-01

    The population of cod in the Baltic sea has over the last decades decreased due to overfishing. To make the students aware of this problem and also to find a solution they are introduced to a game. The purpose of the game is to let the students know how to use renewable natural resources in these aspects; 1 Fishing cod without using it up 2 That solidarity is needed if you are sharing a resource 3 That cooperation is the key to keeping a natural resource healthy. The students are fishermen in group of four and are equipped with a boat. The playing board is a map over the Baltic sea. The rules of the game include the carrying capacity of the sea, how much fish one fishing boat is allowed to pick up, how much it costs to have a boat, and possibilities to buy a bigger boat. The game has two rounds: In round one the students in the group are competing against each other, they are not allowed to talk to each other and they are supposed to get as much fish as they can. As a consequence after round one the sea will become empty. In round two the groups compete with each other and they are coworking within the group. After this round the result is different from the first round. The catches are bigger than in round one and still there are cod left in the sea, which will generate a good fishing in the future.. The discussions after the game can be about why the two rounds ended so different, general discussion about "tragedy of the commons", sustainable use of ecosystem services and discussions about resources in common.

  7. Climate warming causes life-history evolution in a model for Atlantic cod (Gadus morhua)

    PubMed Central

    Holt, Rebecca E.; Jørgensen, Christian

    2014-01-01

    Climate change influences the marine environment, with ocean warming being the foremost driving factor governing changes in the physiology and ecology of fish. At the individual level, increasing temperature influences bioenergetics and numerous physiological and life-history processes, which have consequences for the population level and beyond. We provide a state-dependent energy allocation model that predicts temperature-induced adaptations for life histories and behaviour for the North-East Arctic stock (NEA) of Atlantic cod (Gadus morhua) in response to climate warming. The key constraint is temperature-dependent respiratory physiology, and the model includes a number of trade-offs that reflect key physiological and ecological processes. Dynamic programming is used to find an evolutionarily optimal strategy of foraging and energy allocation that maximizes expected lifetime reproductive output given constraints from physiology and ecology. The optimal strategy is then simulated in a population, where survival, foraging behaviour, growth, maturation and reproduction emerge. Using current forcing, the model reproduces patterns of growth, size-at-age, maturation, gonad production and natural mortality for NEA cod. The predicted climate responses are positive for this stock; under a 2°C warming, the model predicted increased growth rates and a larger asymptotic size. Maturation age was unaffected, but gonad weight was predicted to more than double. Predictions for a wider range of temperatures, from 2 to 7°C, show that temperature responses were gradual; fish were predicted to grow faster and increase reproductive investment at higher temperatures. An emergent pattern of higher risk acceptance and increased foraging behaviour was also predicted. Our results provide important insight into the effects of climate warming on NEA cod by revealing the underlying mechanisms and drivers of change. We show how temperature-induced adaptations of behaviour and several life

  8. Erosional channels on the shoreface of Nauset Beach, Cape Cod, Massachusetts

    USGS Publications Warehouse

    Needell, S. W.; Dillon, William P.; Knebel, H. J.

    1982-01-01

    Many channels (1 to 3 m relief)_are located offshore of Nauset Beach, Cape Cod, Massachusetts, in water 4 to 18 m deep. The channels are oblique to the shoreline, are spaced approximately 260 m apart, and deepen seaward. The southern flank of each channel is rippled whereas the northern flank and interchannel areas are smooth. The origin of the channels is unknown. They probably formed by erosion of the shoreface, perhaps by rip-current circulation during storm conditions or by rip-current circulation under quiet conditions. The channels may control current flow and thereby maintain themselves even though formative conditions may no longer exist.

  9. Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua)

    PubMed Central

    2010-01-01

    Background Atlantic cod (Gadus morhua) is a species with increasing economic significance for the aquaculture industry. The genetic improvement of cod will play a critical role in achieving successful large-scale aquaculture. While many microsatellite markers have been developed in cod, the number of single nucleotide polymorphisms (SNPs) is currently limited. Here we report the identification of SNPs from sequence data generated by a large-scale expressed sequence tag (EST) program, focusing on fish originating from Canadian waters. Results A total of 97976 ESTs were assembled to generate 13448 contigs. We detected 4753 SNPs that met our selection criteria (depth of coverage ≥ 4 reads; minor allele frequency > 25%). 3072 SNPs were selected for testing. The percentage of successful assays was 75%, with 2291 SNPs amplifying correctly. Of these, 607 (26%) SNPs were monomorphic for all populations tested. In total, 64 (4%) of SNPs are likely to represent duplicated genes or highly similar members of gene families, rather than alternative alleles of the same gene, since they showed a high frequency of heterozygosity. The remaining polymorphic SNPs (1620) were categorised as validated SNPs. The mean minor allele frequency of the validated loci was 0.258 (± 0.141). Of the 1514 contigs from which validated SNPs were selected, 31% have a significant blast hit. For the SNPs predicted to occur in coding regions (141), we determined that 36% (51) are non-synonymous. Many loci (1033 SNPs; 64%) are polymorphic in all populations tested. However a small number of SNPs (184) that are polymorphic in the Western Atlantic were monomorphic in fish tested from three European populations. A preliminary linkage map has been constructed with 23 major linkage groups and 924 mapped SNPs. Conclusions These SNPs represent powerful tools to accelerate the genetic improvement of cod aquaculture. They have been used to build a genetic linkage map that can be applied to quantitative trait

  10. Stable oxygen isotope reconstruction of ambient temperature during the collapse of a cod (Gadus morhua) fishery.

    PubMed

    Jones, J Brin; Campana, Steven E

    2009-09-01

    Changing environmental conditions set against a backdrop of high exploitation can result in severe consequences for commercially harvested stocks. The collapse of the Eastern Scotian Shelf cod (Gadus morhua L.) off eastern Canada was primarily due to overexploitation but may have been exacerbated by a widespread temperature decline. Recent studies have called for accurate determination of ambient temperature (the actual temperature exposure history of the fish) before discarding environmental conditions as a factor in the collapse. We used the stable oxygen isotope composition of otoliths (delta18O(oto)) to reconstruct the ambient temperature history of Eastern Scotian Shelf cod from 1970 to 2000 in order to determine whether the stock experienced the temperature decline or shifted their distribution to avoid it. To correct delta18O(oto) for seawater isotope content (deltaO(w)), we generated a new meta-equation for the relationship between delta18O(w) (per mil) and salinity (S, in psu) on the Eastern Scotian Shelf: delta18O(w) = 0.539 x S - 18.790. The ambient temperature series revealed that the large-scale geographic distribution of mature cod remained constant through the cooling period, although their ambient temperature was cooler than expected in warmer periods and warmer than expected in cooler periods, indicating small-scale thermoregulatory movement. Although the mean hydrographic temperature was 4 degrees C, mature cod usually inhabited the coldest available waters (mean ambient temperature = 3 degrees C), while the juveniles usually inhabited warmer waters (mean ambient temperature = 5.5 degrees C). Length-at-age was significantly related to ambient temperature, especially in the early years of growth, and therefore declining ambient temperatures were at least partially responsible for declines in asymptotic length (up to age 8 yr). The most active thermoregulatory movement occurred during a moderate warming period; therefore extreme warming events (such

  11. Ubiquitous presence of piscidin-1 in Atlantic cod as evidenced by immunolocalisation

    PubMed Central

    2012-01-01

    Background Antimicrobial peptides (AMPs), the natural antibiotics bestowed upon all forms of life, consist of small molecular weight proteins with a broad spectrum antimicrobial activity against a variety of pathogenic microorganisms. Piscidins are one of the AMP families that are imperative for the innate defence mechanisms of teleosts. Atlantic cod, a basal fish belonging to the superorder Paracanthopterygii also possesses multiple piscidin peptides. Two piscidin paralogues (pis1 and pis2) and a novel alternative splice variant of pis2 of this fish were previously described by us. To shed light on other potent roles of these molecules, now we have mapped the distribution of piscidin 1 (Pis1), in different tissues and organs of cod through immunohistochemistry (IHC) employing an affinity purified polyclonal antibody specific to Pis1. Results Various cell types and tissues of Atlantic cod including those from the immune organs of naïve fish are armed with Pis1 peptide. Different types of the blood leucocytes and phagocytic cells among the leucocytes examined gave a relatively strong indication of Pis1 immunopositivity. In addition, other cell types such as hematopoietic cells, epithelial cells and multi-granular cells located in the mucosal and hematopoietic tissues were also Pis1-immunoreactive. More interestingly, chondrocytes appear to produce Pis1 and this is the first report on the presence of an AMP in cartilage tissue of fish. Furthermore, Pis1 immunopositivity was detected in other tissues and organs of naïve fish including neural tissues, exocrine and endocrine glands, compound gland cells, excretory kidney, intestinal and respiratory epithelial cells, swim bladder, skin and hypodermis layer, myosepta, liver, heart, eye and oocytes. Conclusions Pis1 peptide is produced by various cell types located in different tissues and organs of Atlantic cod. It is present in all immune-related organs of naïve fish and the elevated peptide expression following

  12. The complete mitogenome of the Murray Cod, Maccullochella peelii (Mitchell, 1838) (Teleostei: Percichthyidae).

    PubMed

    Austin, Christopher M; Tan, Mun Hua; Lee, Yin Peng; Croft, Laurence J; Gan, Han Ming

    2016-01-01

    The complete mitochondrial genome of the iconic Australian freshwater fish, the Murray Cod, Maccullochella peelii, was recovered from partial genome sequencing data using the HiSeq platform (Illumina, San Diego, CA). The mitogenome consists of 16,442 bp (58% A + T content) containing 13 protein-coding genes, 2 ribosomal subunit genes, 22 transfer RNAs, and a 768 bp non-coding AT-rich region. This is the first mitogenome sequence for the genus Maccullochella, and the fourth for the family Percichthyidae. PMID:24779601

  13. MOLECULAR IDENTIFICATION OF Pseudoterranova azarasi LARVAE IN COD (Gadus sp.) SOLD FOR HUMAN CONSUMPTION IN BRAZIL

    PubMed Central

    MARIGO, Juliana; TANIWAKI, Sueli Akemi; PINTO, Pedro Luiz Silva; SOARES, Rodrigo Martins; CATÃO-DIAS, José Luiz

    2015-01-01

    Anisakiasis and Pseudoterranovosis are human diseases caused by the ingestion of live Anisakidae larvae in raw, undercooked or lightly marinated fish. Larvae were collected from one salted cod sold for human consumption in a Sao Paulo market in 2013. One section of one brownish larva was used for molecular analyses. The partial COX2 gene sequence from the larva had a nucleotide identity of 99.8 % with Pseudoterranova azarasi, which belongs to the Pseudoterranova decipiens species complex. The risk of allergy when consuming dead larvae in salted fish is not well known and should be considered. PMID:27049712

  14. Electrothermal atomic absorption spectrophotometry of nickel in tissue homogenates.

    PubMed

    Sunderman, F W; Marzouk, A; Crisostomo, M C; Weatherby, D R

    1985-01-01

    A method for analysis of Ni concentrations in tissues is described, which involves (a) tissue dissection with metal-free obsidian knives, (b) tissue homogenization in polyethylene bags by use of a "Stomacher" blender, (c) oxidative digestion with mixed nitric, sulfuric, and perchloric acids, and (d) quantitation of Ni by electrothermal atomic absorption spectrophotometry with Zeeman background correction. The detection limit for Ni in tissues is 10 ng per g, dry weight; the coefficient of variation ranges from 7 to 15 percent, depending on the tissue Ni concentration; the recovery of Ni added in concentration of 20 ng per g, dry weight, to kidney homogenates averages 101 +/- 8 percent (mean +/- SD). In control rats, Ni concentrations are highest in lung (102 +/- 39 ng per g, dry weight) and lowest in spleen (35 +/- 16 ng per g, dry wt.). In descending order of Ni concentrations, the tissues of control rats rank as follows: lung greater than heart greater than bone greater than kidney greater than brain greater than testis greater than fat greater than liver greater than spleen. In rats killed 24 h after sc injection of NiCl2 (0.125 mmol per kg, body weight) Ni concentrations are highest in kidney (17.7 +/- 2.5 micrograms per g, dry weight) and lowest in brain (0.38 +/- 0.14 micrograms per g, dry weight). In descending order of Ni concentrations, the tissues of NiCl2-treated rats rank as follows: kidney much greater than lung greater than spleen greater than testis greater than heart greater than fat greater than liver greater than bone greater than brain.(ABSTRACT TRUNCATED AT 250 WORDS) PMID:4037701

  15. Electrothermal atomic absorption spectrophotometry of nickel in tissue homogenates

    SciTech Connect

    Sunderman, F.W. Jr.; Marzouk, A.; Crisostomo, M.C.; Weatherby, D.R.

    1985-01-01

    A method for analysis of Ni concentrations in tissues is described, which involves (a) tissue dissection with metal-free obsidian knives, (b) tissue homogenization in polyethylene bags by use by a Stomacher blender, (c) oxidative digestion with mixed nitric, sulfuric, and perchloric acids, and (d) quantitation of Ni by electrothermal atomic absorption spectrophotometry with Zeeman background correction. The detection limit for Ni in tissues is 10 ng per g, dry weight; the coefficient of variation ranges from 7 to 15%, depending on the tissue Ni concentration; the recovery of Ni added in concentration of 20 ng per g, dry weight, to kidney homogenates averages 101 +/- 8% (mean +/-SD). In control rats, Ni concentrations are highest in lung (102 +/- 39 ng per g, dry weight) and lowest in spleen (35 +/- 16 ng per g, dry wt.). In descending order of Ni concentrations, the tissues of control rats rank as follows: lung > heart > bone > kidney > brain > testis > fat > liver > spleen. In rats killed 24 h after sc injection of NiCl/sub 2/ (0.125 mmol per kg, body weight) Ni concentrations are highest in kidney (17.7 +/- 2.5 ..mu..g per g, dry weight) and lowest in brain (0.38 +/- 0.14 ..mu..g per g, dry weight). In descending order of Ni concentrations, the tissues of NiCl/sub 2/-treated rats rank as follows: kidney >> lung > spleen > testis > heart > fat > liver > bone > brain. The present method fills the need for an accurate, sensitive, and practical technique to determine tissue Ni concentrations, with stringent precautions to minimize Ni contamination during tissue sampling and processing. 35 references, 5 figures, 1 table.

  16. [Effect of ambroxol on lipid peroxidation in homogenates of the human placenta].

    PubMed

    Chlubek, D; Zawierta, J; Olszewska, M; Kaźmierczyk, A; Sikora, M

    2001-10-01

    Free radically induced lipid peroxidation has been suggested as a possible pathogenic factor in pregnancy complications. The placenta is a potential source of lipid peroxides, due to its high lipid concentration. Cells and tissues are protected against toxic lipid peroxides by antioxidants. Ambroxol was found to be equipotent to well-known antioxidants in protecting lipids from peroxidative attack in lungs. To date there is no information on ambroxol capacity to act as a lipid antioxidant in the human placenta. Therefore, the aim of our study was to investigate the effect of ambroxol on lipid peroxidation in homogenates of the human placenta by malondialdehyde measurements. Fourteen homogenates of placentas obtained from healthy women were incubated for 24 hours (pH = 7.4, temp. 37 degrees C) without (group II) and with (group III) ambroxol hydrochloride solutions (Boehringer Ingelheim--Germany) at concentration of 2200 ng/mL. Non-incubated homogenates were treated as a control group (group I). It was found that lipid peroxidation and malondialdehyde formation is significantly higher in group II homogenates than in the control group (p < 0.05). Incubation with ambroxol (group III) caused a non-significant increase of malondialdehyde concentration in comparison with the control group and a non-significant but distinct decrease when compared with group II (incubation without ambroxol). This investigation shows that ambroxol decreases malondialdehyde formation in homogenates of the human placenta and can be regarded as lipid antioxidant. PMID:11848017

  17. Synthesis, characterization, and molecular structures of binary and ternary copper (I) complexes with 1,5-cyclooctadiene (cod): (Cu(cod) sub 2 )ClO sub 4 and (Cu(cod)(2,2 prime -bipyridine))PF sub 6

    SciTech Connect

    Munakata, Megumu; Kitagawa, Susumu; Shimono, Hisao; Masuda, Hideki )

    1991-06-12

    Binary and ternary copper (I) complexes with 1,5-cyclooctadiene (cod), (Cu(cod){sub 2})ClO{sub 4} (1) and (Cu(cod)(bpy))PF{sub 6} (2) (bpy = 2,2{prime}-bipyridine) have been prepared. The crystal structures have been determined by using single-crystal X-ray diffraction methods. The geometry about the Cu atom coordinated to the four olefinic moieties of the two cod molecules is quasi-tetrahedral in 1. The Cu-C(olefin) distances of 2,27 {angstrom} (average) are significantly longer than those found for copper (I) olefin complexes, and the C{double bond}C bond distances of 1.33 {angstrom} (average) of the coordinated cod are almost the same that of free cod. On the basis of the C{double bond}C distance, the stretching frequencies of the C{double bond}C bonds and the {sup 1}H NMR chemical shifts of the olefinia protons, the Cu-olefin bonds in 1 were concluded to be dominated by {sigma} donation from the olefinic moiety to the copper. The geometry about the Cu atom coordinated to two nitrogen atoms of boy and two olefinic moiety of the cod molecule are significantly shorter than those of the other olefinic moiety (2.44 {angstrom} (average). In response to this, the C{double bond}C distance (1.36 (1) {angstrom}) of the former is longer than that (1.33) (1) {angstrom}) of the latter. 32 refs., 5 figs., 6 tabs.

  18. Optimization of Fenton process for decoloration and COD removal in tobacco wastewater and toxicological evaluation of the effluent.

    PubMed

    Wang, Meizhen; Yang, Guiqin; Feng, Huajun; Lv, Zhenmei; Min, Hang

    2011-01-01

    Decoloration and chemical oxygen demand (COD) removal in tobacco wastewater by Fenton process has been optimized under 25 +/- 2 degrees C. The results showed that the optimal range of conditions were pH 4.13-4.66, Fe(2+) 0.29-0.34 g/L and H2O2 > or = 2.73 g/L. Within this range, up to 95% of colour and 90% of COD was removed. In an enlarged system, setting the optimal conditions as pH 4.50, Fe(2+) 0.34 g/L and H2O2 4.00 g/L, the colour removal rate was 96.03 +/- 2.57%, with COD removal rate of 93.30 +/- 2.92%. The residual COD of 73.67 +/- 19.70 mg/L in effluent had hit the State's first-class standard for the industrial discharge in China (< 100 mg/L COD, GB8978-1996). The ecological safety of Fenton process has also been evaluated. When reaction completed, the content of hydroxyl free radical (OH) was 3.26 +/- 0.44 mg/L. There was no inhibition of Fenton effluent in growth of Escherichia coli, Pseudomonas putida, Pseudomonas sp. HF-1, Acinetobacter sp. TW and Sphingomonas sp. TY. No oxidative stress was induced on strain HF-1 by Fenton effluent. Thus, Fenton process was one of high-efficiency and ecologically safe strategy for tobacco wastewater advanced treatment. PMID:22049737

  19. Removal of COD and nitrogen from animal food plant wastewater in an intermittently-aerated structured-bed reactor.

    PubMed

    Wosiack, Priscila Arcoverde; Lopes, Deize Dias; Rissato Zamariolli Damianovic, Márcia Helena; Foresti, Eugenio; Granato, Daniel; Barana, Ana Cláudia

    2015-05-01

    This study evaluated the performance of a continuous flow structured-bed reactor in the simultaneous removal of total nitrogen (TN) and chemical oxygen demand (COD) in the effluent from an animal food plant. The reactor had an intermittent aeration system; hydraulic retention time (HRT) of one day; temperature of 30 °C; and recirculation ratio of five times the flow. An experimental central composite rotational delineation (CCRD) type design was used to define the aeration conditions and nitrogen load (factors) to be studied. Response surface methodology was used to analyse the influence of the factors above the results, the removal of TN and COD. It was observed that the aeration factor showed the greatest significance for the results and that the affluent TKN concentration did not have a significant effect, at a 95% level of confidence, on COD removal. Throughout the experiment, the COD/N ratio remained between 3.2 and 3.8. The best results for COD and TN removal, 80% and 88%, respectively, were obtained with 158 min of aeration on a cycle of 180 min and 255 mg L(-1) of Total Kjeldahl Nitrogen (TKN) in the substrate. PMID:25725386

  20. Nanodosimetric track structure in homogeneous extended beams.

    PubMed

    Conte, V; Moro, D; Colautti, P; Grosswendt, B

    2015-09-01

    Physical aspects of particle track structure are important in determining the induction of clustered damage in relevant subcellular structures like the DNA and higher-order genomic structures. The direct measurement of track-structure properties of ionising radiation is feasible today by counting the number of ionisations produced inside a small gas volume. In particular, the so-called track-nanodosimeter, installed at the TANDEM-ALPI accelerator complex of LNL, measures ionisation cluster-size distributions in a simulated subcellular structure of dimensions 20 nm, corresponding approximately to the diameter of the chromatin fibre. The target volume is irradiated by pencil beams of primary particles passing at specified impact parameter. To directly relate these measured track-structure data to radiobiological measurements performed in broad homogeneous particle beams, these data can be integrated over the impact parameter. This procedure was successfully applied to 240 MeV carbon ions and compared with Monte Carlo simulations for extended fields. PMID:25848108

  1. Homogeneously dispersed multimetal oxygen-evolving catalysts.

    PubMed

    Zhang, Bo; Zheng, Xueli; Voznyy, Oleksandr; Comin, Riccardo; Bajdich, Michal; García-Melchor, Max; Han, Lili; Xu, Jixian; Liu, Min; Zheng, Lirong; García de Arquer, F Pelayo; Dinh, Cao Thang; Fan, Fengjia; Yuan, Mingjian; Yassitepe, Emre; Chen, Ning; Regier, Tom; Liu, Pengfei; Li, Yuhang; De Luna, Phil; Janmohamed, Alyf; Xin, Huolin L; Yang, Huagui; Vojvodic, Aleksandra; Sargent, Edward H

    2016-04-15

    Earth-abundant first-row (3d) transition metal-based catalysts have been developed for the oxygen-evolution reaction (OER); however, they operate at overpotentials substantially above thermodynamic requirements. Density functional theory suggested that non-3d high-valency metals such as tungsten can modulate 3d metal oxides, providing near-optimal adsorption energies for OER intermediates. We developed a room-temperature synthesis to produce gelled oxyhydroxides materials with an atomically homogeneous metal distribution. These gelled FeCoW oxyhydroxides exhibit the lowest overpotential (191 millivolts) reported at 10 milliamperes per square centimeter in alkaline electrolyte. The catalyst shows no evidence of degradation after more than 500 hours of operation. X-ray absorption and computational studies reveal a synergistic interplay between tungsten, iron, and cobalt in producing a favorable local coordination environment and electronic structure that enhance the energetics for OER. PMID:27013427

  2. The homogeneity conjecture for supergravity backgrounds

    NASA Astrophysics Data System (ADS)

    Figueroa-O'Farrill, José Miguel

    2009-06-01

    These notes record three lectures given at the workshop "Higher symmetries in Physics", held at the Universidad Complutense de Madrid in November 2008. In them we explain how to construct a Lie (super)algebra associated to a spin manifold, perhaps with extra geometric data, and a notion of privileged spinors. The typical examples are supersymmetric supergravity backgrounds; although there are more classical instances of this construction. We focus on two results: the geometric constructions of compact real forms of the simple Lie algebras of type B4, F4 and E8 from S7, S8 and S15, respectively; and the construction of the Killing superalgebra of eleven-dimensional supergravity backgrounds. As an application of this latter construction we show that supersymmetric supergravity backgrounds with enough supersymmetry are necessarily locally homogeneous.

  3. RF Spectroscopy on a Homogeneous Fermi Gas

    NASA Astrophysics Data System (ADS)

    Yan, Zhenjie; Mukherjee, Biswaroop; Patel, Parth; Struck, Julian; Zwierlein, Martin

    2016-05-01

    Over the last two decades RF spectroscopy has been established as an indispensable tool to probe a large variety of fundamental properties of strongly interacting Fermi gases. This ranges from measurement of the pairing gap over tan's contact to the quasi-particle weight of Fermi polarons. So far, most RF spectroscopy experiments have been performed in harmonic traps, resulting in an averaged response over different densities. We have realized an optical uniform potential for ultracold Fermi gases of 6 Li atoms, which allows us to avoid the usual problems connected to inhomogeneous systems. Here we present recent results on RF spectroscopy of these homogeneous samples with a high signal to noise ratio. In addition, we report progress on measuring the contact of a unitary Fermi gas across the normal to superfluid transition.

  4. Analysis of homogeneous turbulent reacting flows

    NASA Technical Reports Server (NTRS)

    Leonard, A. D.; Hill, J. C.; Mahalingam, S.; Ferziger, J. H.

    1988-01-01

    Full turbulence simulations at low Reynolds numbers were made for the single-step, irreversible, bimolecular reaction between non-premixed reactants in isochoric, decaying homogeneous turbulence. Various initial conditions for the scalar field were used in the simulations to control the initial scalar dissipation length scale, and simulations were also made for temperature-dependent reaction rates and for non-stoichiometric and unequal diffusivity conditions. Joint probability density functions (pdf's), conditional pdf's, and various statistical quantities appearing in the moment equations were computed. Preliminary analysis of the results indicates that compressive strain-rate correlates better than other dynamical quantities with local reaction rate, and the locations of peak reaction rates seem to be insensitive to the scalar field initial conditions.

  5. Soliton production with nonlinear homogeneous lines

    SciTech Connect

    Elizondo-Decanini, Juan M.; Coleman, Phillip D.; Moorman, Matthew W.; Petney, Sharon Joy Victor; Dudley, Evan C.; Youngman, Kevin; Penner, Tim Dwight; Fang, Lu; Myers, Katherine M.

    2015-11-24

    Low- and high-voltage Soliton waves were produced and used to demonstrate collision and compression using diode-based nonlinear transmission lines. Experiments demonstrate soliton addition and compression using homogeneous nonlinear lines. We built the nonlinear lines using commercially available diodes. These diodes are chosen after their capacitance versus voltage dependence is used in a model and the line design characteristics are calculated and simulated. Nonlinear ceramic capacitors are then used to demonstrate high-voltage pulse amplification and compression. The line is designed such that a simple capacitor discharge, input signal, develops soliton trains in as few as 12 stages. We also demonstrated output voltages in excess of 40 kV using Y5V-based commercial capacitors. The results show some key features that determine efficient production of trains of solitons in the kilovolt range.

  6. Soliton production with nonlinear homogeneous lines

    DOE PAGESBeta

    Elizondo-Decanini, Juan M.; Coleman, Phillip D.; Moorman, Matthew W.; Petney, Sharon Joy Victor; Dudley, Evan C.; Youngman, Kevin; Penner, Tim Dwight; Fang, Lu; Myers, Katherine M.

    2015-11-24

    Low- and high-voltage Soliton waves were produced and used to demonstrate collision and compression using diode-based nonlinear transmission lines. Experiments demonstrate soliton addition and compression using homogeneous nonlinear lines. We built the nonlinear lines using commercially available diodes. These diodes are chosen after their capacitance versus voltage dependence is used in a model and the line design characteristics are calculated and simulated. Nonlinear ceramic capacitors are then used to demonstrate high-voltage pulse amplification and compression. The line is designed such that a simple capacitor discharge, input signal, develops soliton trains in as few as 12 stages. We also demonstrated outputmore » voltages in excess of 40 kV using Y5V-based commercial capacitors. The results show some key features that determine efficient production of trains of solitons in the kilovolt range.« less

  7. Homogeneous catalyst formulations for methanol production

    DOEpatents

    Mahajan, Devinder; Sapienza, Richard S.; Slegeir, William A.; O'Hare, Thomas E.

    1991-02-12

    There is disclosed synthesis of CH.sub.3 OH from carbon monoxide and hydrogen using an extremely active homogeneous catalyst for methanol synthesis directly from synthesis gas. The catalyst operates preferably between 100.degree.-150.degree. C. and preferably at 100-150 psia synthesis gas to produce methanol. Use can be made of syngas mixtures which contain considerable quantities of other gases, such as nitrogen, methane or excess hydrogen. The catalyst is composed of two components: (a) a transition metal carbonyl complex and (b) an alkoxide component. In the simplest formulation, component (a) is a complex of nickel tetracarbonyl and component (b) is methoxide (CH.sub.3 O.sup.-), both being dissolved in a methanol solvent system. The presence of a co-solvent such as p-dioxane, THF, polyalcohols, ethers, hydrocarbons, and crown ethers accelerates the methanol synthesis reaction.

  8. Homogeneous catalyst formulations for methanol production

    DOEpatents

    Mahajan, Devinder; Sapienza, Richard S.; Slegeir, William A.; O'Hare, Thomas E.

    1990-01-01

    There is disclosed synthesis of CH.sub.3 OH from carbon monoxide and hydrogen using an extremely active homogeneous catalyst for methanol synthesis directly from synthesis gas. The catalyst operates preferably between 100.degree.-150.degree. C. and preferably at 100-150 psia synthesis gas to produce methanol. Use can be made of syngas mixtures which contain considerable quantities of other gases, such as nitrogen, methane or excess hydrogen. The catalyst is composed of two components: (a) a transition metal carbonyl complex and (b) an alkoxide component. In the simplest formulation, component (a) is a complex of nickel tetracarbonyl and component (b) is methoxide (CH.sub.3 O.sup.13 ), both being dissolved in a methanol solvent system. The presence of a co-solvent such as p-dioxane, THF, polyalcohols, ethers, hydrocarbons, and crown ethers accelerates the methanol synthesis reaction.

  9. Homogenization of global radiosonde humidity data

    NASA Astrophysics Data System (ADS)

    Blaschek, Michael; Haimberger, Leopold

    2016-04-01

    The global radiosonde network is an important source of upper-air measurements and is strongly connected to reanalysis efforts of the 20th century. However, measurements are strongly affected by changes in the observing system and require a homogenization before they can be considered useful in climate studies. In particular humidity measurements are known to show spurious trends and biases induced by many sources, e.g. reporting practices or freezing of the sensor. We propose to detect and correct these biases in an automated way, as has been done with temperature and winds. We detect breakpoints in dew point depression (DPD) time series by employing a standard normal homogeneity test (SNHT) on DPD-departures from ERA-Interim. In a next step, we calculate quantile departures between the latter and the earlier part near the breakpoints of the time series, going back in time. These departures adjust the earlier distribution of DPD to the latter distribution, called quantile matching, thus removing for example a non climatic shift. We employ this approach to the existing radiosonde network. In a first step to verify our approach we compare our results with ERA-Interim data and brightness temperatures of humidity-sensitive channels of microwave measuring radiometers (SSMIS) onboard DMSP F16. The results show that some of the biases can be detected and corrected in an automated way, however large biases that impact the distribution of DPD values originating from known reporting practices (e.g. 30 DPD on US stations) remain. These biases can be removed but not corrected. The comparison of brightness temperatures from satellite and radiosondes proofs to be difficult as large differences result from for example representative errors.

  10. Alterations of mitochondria in liver but not in heart homogenates after treatment of rats with benznidazole.

    PubMed

    Rendon, D A

    2014-10-01

    The mitochondrial oxidative phosphorylation system was studied in liver and heart homogenates after treatment of rats with benznidazole. The drug was given by oral gavage to adult female Wistar rats for 9 consecutive days (100 mg benznidazole/kg body weight as a daily dose). The mitochondrial state 4 and state 3 respiration rates, respiratory control, efficiency of oxidative phosphorylation (ADP/O), and ATPsynthase activity were assayed. The results showed that according to all these parameters, the mitochondria in cardiac homogenates were not affected in the rats treated with benznidazole. By contrast, mitochondria in the liver homogenates of drug-treated rats were altered, showing decreased respiratory control and a lower coefficient of ADP/O as a result of an increase in the state 4 respiration rate. These data indicate the possibility of production of an uncoupling factor leading to increased proton leakage through the inner mitochondrial membrane as a result of a 9-day treatment of rats with benzonidazole. The obtained experimental data might at least partly explain the nature of benznidazole toxicity in the liver treated with benznidazole. PMID:24505051

  11. Factors Regulating Early Life History Dispersal of Atlantic Cod (Gadus morhua) from Coastal Newfoundland

    PubMed Central

    Stanley, Ryan R. E.; deYoung, Brad; Snelgrove, Paul V. R.; Gregory, Robert S.

    2013-01-01

    To understand coastal dispersal dynamics of Atlantic cod (Gadus morhua), we examined spatiotemporal egg and larval abundance patterns in coastal Newfoundland. In recent decades, Smith Sound, Trinity Bay has supported the largest known overwintering spawning aggregation of Atlantic cod in the region. We estimated spawning and dispersal characteristics for the Smith Sound-Trinity Bay system by fitting ichthyoplankton abundance data to environmentally-driven, simplified box models. Results show protracted spawning, with sharply increased egg production in early July, and limited dispersal from the Sound. The model for the entire spawning season indicates egg export from Smith Sound is 13%•day−1 with a net mortality of 27%•day–1. Eggs and larvae are consistently found in western Trinity Bay with little advection from the system. These patterns mirror particle tracking models that suggest residence times of 10–20 days, and circulation models indicating local gyres in Trinity Bay that act in concert with upwelling dynamics to retain eggs and larvae. Our results are among the first quantitative dispersal estimates from Smith Sound, linking this spawning stock to the adjacent coastal waters. These results illustrate the biophysical interplay regulating dispersal and connectivity originating from inshore spawning of coastal northwest Atlantic. PMID:24058707

  12. Polycyclic aromatic compounds in cod (Gadus morhua) from the Northwest Atlantic and St. Lawrence Estuary.

    PubMed

    Hellou, J; Upshall, C; Payne, J F; Hodson, P V

    1994-05-01

    There is limited information available on levels of polycyclic aromatic hydrocarbons (PAH) in major fish populations including populations from the Northwest Atlantic. The cod (Gadus morhua) stocks off eastern Canada form the basis of one of the world's most important fisheries. Muscle tissues of cod collected from Northwest Atlantic Fisheries Organisation (NAFO) management Divisions 2J, 3K and 3Ps off Newfoundland and Labrador, as well as three contaminated sites in the Gulf of St. Lawrence were analyzed for total polycyclic aromatic (PAC) by fluorimetry. Concentrations were determined in terms of crude oil and chrysene equivalents in line with recommendations of the International Oceanographic Commission. Overall, relatively low concentrations of PAC were found, the highest values generally being below 0.1 microgram/g (dry weight) in terms of chrysene equivalents. Similarly, only trace levels of a few PAH were detected in composite samples analyzed by gas chromatography-mass spectrometry (GC-MS). It is of interest that the highest levels of PAC were found in fish from NAFO Division 3K, while concentrations in fish from the two contiguous zones, 2J and 3Ps, as well as the Gulf of St. Lawrence, were similar. Division 3K is a major fishing zone and it is important to determine if trawler fleets are important sources of hydrocarbons derived from fossil fuels, in this and similar fishing areas of the world's oceans. PMID:8016631

  13. Topical Formulation Comprising Fatty Acid Extract from Cod Liver Oil: Development, Evaluation and Stability Studies

    PubMed Central

    Ilievska, Biljana; Loftsson, Thorsteinn; Hjalmarsdottir, Martha Asdis; Asgrimsdottir, Gudrun Marta

    2016-01-01

    The purpose of this study was to develop a pharmaceutical formulation containing fatty acid extract rich in free omega-3 fatty acids such as eicosapentaenoic acid and docosahexaenoic acid for topical use. Although the health benefits of cod liver oil and other fish oils taken orally as a dietary supplement have been acknowledged and exploited, it is clear that their use can be extended further to cover their antibacterial properties. In vitro evaluation showed that 20% (v/v) fatty acid extract exhibits good activity against strains of the Gram-positive bacteria Staphylococcus aureus, Enterococcus faecalis, Streptoccoccus pyogenes and Streptoccoccus pneumonia. Therefore, free polyunsaturated fatty acids from cod liver oil or other fish oils can be used as safe and natural antibacterial agents. In this study, ointment compositions containing free fatty acids as active antibacterial agents were prepared by using various natural waxes and characterized. The effects of different waxes, such as carnauba wax, ozokerite wax, laurel wax, beeswax, rice bran wax, candelilla wax and microcrystalline wax, in the concentration range of 1% to 5% (w/w) on the ointment texture, consistency and stability were evaluated. The results showed significant variations in texture, sensory and rheological profiles. This was attributed to the wax’s nature and chain composition. Microcrystalline wax gave the best results but laurel wax, beeswax and rice bran wax exhibited excellent texturing, similar sensory profiles and well-balanced rheological properties. PMID:27258290

  14. A 12,000-year history of vegetation and climate for Cape Cod, Massachusetts

    NASA Astrophysics Data System (ADS)

    Winkler, Marjorie Green

    1985-05-01

    Pollen and charcoal analysis of radiocarbon-dated sediment cores from Duck Pond in the Cape Cod National Seashore provide a continuous 12,000-yr vegetation and climate history of outer Cape Cod. A Picea-Hudsonia parkland and then a Picea-Pinus banksiana-Alnus crispa boreal forest association grew near the site between 12,000 and 10,000 yr B.P. This vegetation was replaced by a northern conifer forest of Pinus strobus-P. banksiana, and, subsequently, by a more mesophytic forest ( Pinus strobus, Tsuga, Quercus, Fagus, Acer, Ulmus, Fraxinus, Ostrya) as the climate became warmer and wetter by 9500 yr B.P. By 9000 yr B.P. a Pinus rigida-Quercus association dominated the landscape. High charcoal frequencies from this and subsequent levels suggest that the pine barrens association developed during a warmer and drier climate that lasted from 9000 to about 5000 yr B.P. Increased percentages of Pinus strobus pollen indicate a return to moister and cooler conditions by about 3500 yr B.P. A doubled sedimentation rate, increased charcoal, and increased herb pollen suggest land disturbance near the pond before European settlement. These results suggest a rapid warming in the northeast in the early Holocene and support a hypothesis of a rapid sea level rise at that time. Comparison of the pollen results from Duck Pond with those from Rogers Lake, Connecticut, illustrates the importance of edaphic factors in determining the disturbance frequency and vegetation history of an area.

  15. Spatiotemporal SNP analysis reveals pronounced biocomplexity at the northern range margin of Atlantic cod Gadus morhua

    PubMed Central

    Therkildsen, Nina Overgaard; Hemmer-Hansen, Jakob; Hedeholm, Rasmus Berg; Wisz, Mary S; Pampoulie, Christophe; Meldrup, Dorte; Bonanomi, Sara; Retzel, Anja; Olsen, Steffen Malskær; Nielsen, Einar Eg

    2013-01-01

    Accurate prediction of species distribution shifts in the face of climate change requires a sound understanding of population diversity and local adaptations. Previous modeling has suggested that global warming will lead to increased abundance of Atlantic cod (Gadus morhua) in the ocean around Greenland, but the dynamics of earlier abundance fluctuations are not well understood. We applied a retrospective spatiotemporal population genomics approach to examine the temporal stability of cod population structure in this region and to search for signatures of divergent selection over a 78-year period spanning major demographic changes. Analyzing >900 gene-associated single nucleotide polymorphisms in 847 individuals, we identified four genetically distinct groups that exhibited varying spatial distributions with considerable overlap and mixture. The genetic composition had remained stable over decades at some spawning grounds, whereas complete population replacement was evident at others. Observations of elevated differentiation in certain genomic regions are consistent with adaptive divergence between the groups, indicating that they may respond differently to environmental variation. Significantly increased temporal changes at a subset of loci also suggest that adaptation may be ongoing. These findings illustrate the power of spatiotemporal population genomics for revealing biocomplexity in both space and time and for informing future fisheries management and conservation efforts. PMID:23789034

  16. Historical accumulation of organic contaminants in sediment cores from Massachusetts and Cape Cod Bays

    SciTech Connect

    Seavey, J.A.; Shea, D.; Weisbrod, A.V.; Hofelt, C.S.

    1995-12-31

    Trace level concentrations of over 50 polynuclear aromatic hydrocarbons (PAH) and linear alkyl benzenes (LAB), 16 chlorinated pesticides, and 20 polychlorinated biphenyls (PCB) were measured in sediment cores collected at ten sampling stations located in Massachusetts and Cape Cod Bays. The sediment cores were dated by using Pb-210. PAH and LAB values ranged from 36--30388 ng/g and < 1--181 ng/g (dry weight), respectively. Pesticide and PCB values ranged from 0.8--23 ng/g and 0.8--35 ng/g, respectively. As expected, the contaminant concentrations correlate with the amount of organic carbon in the sediment and generally decrease with increasing age of the sediment and increasing distance from Boston Harbor, the major historical source of many of these contaminants. Total inventories of contaminants in Massachusetts Bay were calculated and used to help construct a contaminant mass balance for the region. Down-core profiles were used to help reconstruct historical loading to the region. The relative distributions of contaminants in the sediment were used, along with source distributions (fingerprints), to calculate the contribution of each source to the measured sediment inventory. LABs were particularly useful in distinguishing the Boston Harbor sewage effluent from other sources. Implications to the long term fate and effects of contaminants in Massachusetts and Cape Cod Bays will be presented.

  17. The immune response of juvenile Atlantic cod (Gadus morhua L.) to chronic exposure to produced water.

    PubMed

    Pérez-Casanova, Juan C; Hamoutene, Dounia; Samuelson, Stephanie; Burt, Kimberly; King, Thomas L; Lee, Kenneth

    2010-07-01

    Produced water (PW) is the main discharge from the offshore oil industry and contains oil-derived compounds such as poly-aromatic hydrocarbons, phenols, alkylphenols, and heavy metals. Studies suggest that PW discharges may affect the biota over larger areas from the oil drilling sites at sea than originally predicted. We investigated the effects of chronic exposure to PW on some aspects of juvenile Atlantic cod immunity, stress response and growth by intermittently exposing fish to 0, 100 or 200 ppm of PW for 22 weeks. No significant effects of PW were observed on growth, hepatosomatic index, condition factor or plasma cortisol. The respiratory burst (RB) of circulating leukocytes was significantly elevated in the 100 ppm group only, while the RB of head-kidney leukocytes was significantly decreased in both the 100 and 200 ppm groups. Significant up-regulation of the mRNA expression of beta-2-microglobulin, immunoglobulin-M light chain and interleukins-1beta and -8 was observed in the 200 ppm group, while the down-regulation of interferon stimulated gene 15 was obvious for both the 100 and 200 ppm groups. The results suggest that chronic exposure to environmentally relevant concentrations of PW causes modulations of the immune system of juvenile Atlantic cod with most immune parameters being stimulated, potentially resulting in an energetic cost that may be detrimental to the fish. PMID:20338632

  18. Harvest selection on Atlantic cod behavioral traits: implications for spatial management

    PubMed Central

    Olsen, Esben Moland; Heupel, Michelle R; Simpfendorfer, Colin A; Moland, Even

    2012-01-01

    Harvesting wild populations may contrast or reinforce natural agents of selection and potentially cause evolutionary changes in life-history traits such as growth and maturation. Harvest selection may also act on behavioral traits, although this field of research has so far received less attention. We used acoustic tags and a network of receivers to monitor the behavior and fate of individual Atlantic cod (Gadus morhua, N = 60) in their natural habitat on the Norwegian Skagerrak coast. Fish with a strong diel vertical migration, alternating between shallow- and deep-water habitats, had a higher risk of being captured in the fishery (traps, gillnet, hand line) as compared to fish that stayed in deeper water. There was also a significant negative correlation between fish size (30–66 cm) and the magnitude of diel vertical migration. Natural selection on behavior was less clear, but tended to favor fish with a large activity space. On a monthly time scale we found significant repeatabilities for cod behavior, meaning that individual characteristics tended to persist and therefore may be termed personality traits. We argue that an evolutionary approach to fisheries management should consider fish behavior. This would be of particular relevance for spatial management actions such as marine reserve design. PMID:22957161

  19. Ocean Acidification Effects on Atlantic Cod Larval Survival and Recruitment to the Fished Population

    PubMed Central

    Stiasny, Martina H.; Mittermayer, Felix H.; Sswat, Michael; Voss, Rüdiger; Jutfelt, Fredrik; Chierici, Melissa; Puvanendran, Velmurugu; Mortensen, Atle; Reusch, Thorsten B. H.; Clemmesen, Catriona

    2016-01-01

    How fisheries will be impacted by climate change is far from understood. While some fish populations may be able to escape global warming via range shifts, they cannot escape ocean acidification (OA), an inevitable consequence of the dissolution of anthropogenic carbon dioxide (CO2) emissions in marine waters. How ocean acidification affects population dynamics of commercially important fish species is critical for adapting management practices of exploited fish populations. Ocean acidification has been shown to impair fish larvae’s sensory abilities, affect the morphology of otoliths, cause tissue damage and cause behavioural changes. Here, we obtain first experimental mortality estimates for Atlantic cod larvae under OA and incorporate these effects into recruitment models. End-of-century levels of ocean acidification (~1100 μatm according to the IPCC RCP 8.5) resulted in a doubling of daily mortality rates compared to present-day CO2 concentrations during the first 25 days post hatching (dph), a critical phase for population recruitment. These results were consistent under different feeding regimes, stocking densities and in two cod populations (Western Baltic and Barents Sea stock). When mortality data were included into Ricker-type stock-recruitment models, recruitment was reduced to an average of 8 and 24% of current recruitment for the two populations, respectively. Our results highlight the importance of including vulnerable early life stages when addressing effects of climate change on fish stocks. PMID:27551924

  20. Topical Formulation Comprising Fatty Acid Extract from Cod Liver Oil: Development, Evaluation and Stability Studies.

    PubMed

    Ilievska, Biljana; Loftsson, Thorsteinn; Hjalmarsdottir, Martha Asdis; Asgrimsdottir, Gudrun Marta

    2016-06-01

    The purpose of this study was to develop a pharmaceutical formulation containing fatty acid extract rich in free omega-3 fatty acids such as eicosapentaenoic acid and docosahexaenoic acid for topical use. Although the health benefits of cod liver oil and other fish oils taken orally as a dietary supplement have been acknowledged and exploited, it is clear that their use can be extended further to cover their antibacterial properties. In vitro evaluation showed that 20% (v/v) fatty acid extract exhibits good activity against strains of the Gram-positive bacteria Staphylococcus aureus, Enterococcus faecalis, Streptoccoccus pyogenes and Streptoccoccus pneumonia. Therefore, free polyunsaturated fatty acids from cod liver oil or other fish oils can be used as safe and natural antibacterial agents. In this study, ointment compositions containing free fatty acids as active antibacterial agents were prepared by using various natural waxes and characterized. The effects of different waxes, such as carnauba wax, ozokerite wax, laurel wax, beeswax, rice bran wax, candelilla wax and microcrystalline wax, in the concentration range of 1% to 5% (w/w) on the ointment texture, consistency and stability were evaluated. The results showed significant variations in texture, sensory and rheological profiles. This was attributed to the wax's nature and chain composition. Microcrystalline wax gave the best results but laurel wax, beeswax and rice bran wax exhibited excellent texturing, similar sensory profiles and well-balanced rheological properties. PMID:27258290