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Sample records for comparing tiling array

  1. High-resolution genomic profiles of breast cancer cell lines assessed by tiling BAC array comparative genomic hybridization.

    PubMed

    Jönsson, Göran; Staaf, Johan; Olsson, Eleonor; Heidenblad, Markus; Vallon-Christersson, Johan; Osoegawa, Kazutoyo; de Jong, Pieter; Oredsson, Stina; Ringnér, Markus; Höglund, Mattias; Borg, Ake

    2007-06-01

    A BAC-array platform for comparative genomic hybridization was constructed from a library of 32,433 clones providing complete genome coverage, and evaluated by screening for DNA copy number changes in 10 breast cancer cell lines (BT474, MCF7, HCC1937, SK-BR-3, L56Br-C1, ZR-75-1, JIMT1, MDA-MB-231, MDA-MB-361, and HCC2218) and one cell line derived from fibrocystic disease of the breast (MCF10A). These were also characterized by gene expression analysis and found to represent all five recently described breast cancer subtypes using the "intrinsic gene set" and centroid correlation. Three cell lines, HCC1937 and L56BrC1 derived from BRCA1 mutation carriers and MDA-MB-231, were of basal-like subtype and characterized by a high frequency of low-level gains and losses of typical pattern, including limited deletions on 5q. Four estrogen receptor positive cell lines were of luminal A subtype and characterized by a different pattern of aberrations and high-level amplifications, including ERBB2 and other 17q amplicons in BT474 and MDA-MB-361. SK-BR-3 cells, characterized by a complex genome including ERBB2 amplification, massive high-level amplifications on 8q and a homozygous deletion of CDH1 at 16q22, had an expression signature closest to luminal B subtype. The effects of gene amplifications were verified by gene expression analysis to distinguish targeted genes from silent amplicon passengers. JIMT1, derived from an ERBB2 amplified trastuzumab resistant tumor, was of the ERBB2 subtype. Homozygous deletions included other known targets such as PTEN (HCC1937) and CDKN2A (MDA-MB-231, MCF10A), but also new candidate suppressor genes such as FUSSEL18 (HCC1937) and WDR11 (L56Br-C1) as well as regions without known genes. The tiling BAC-arrays constitute a powerful tool for high-resolution genomic profiling suitable for cancer research and clinical diagnostics. PMID:17334996

  2. Design optimization methods for genomic DNA tiling arrays

    PubMed Central

    Bertone, Paul; Trifonov, Valery; Rozowsky, Joel S.; Schubert, Falk; Emanuelsson, Olof; Karro, John; Kao, Ming-Yang; Snyder, Michael; Gerstein, Mark

    2006-01-01

    A recent development in microarray research entails the unbiased coverage, or tiling, of genomic DNA for the large-scale identification of transcribed sequences and regulatory elements. A central issue in designing tiling arrays is that of arriving at a single-copy tile path, as significant sequence cross-hybridization can result from the presence of non-unique probes on the array. Due to the fragmentation of genomic DNA caused by the widespread distribution of repetitive elements, the problem of obtaining adequate sequence coverage increases with the sizes of subsequence tiles that are to be included in the design. This becomes increasingly problematic when considering complex eukaryotic genomes that contain many thousands of interspersed repeats. The general problem of sequence tiling can be framed as finding an optimal partitioning of non-repetitive subsequences over a prescribed range of tile sizes, on a DNA sequence comprising repetitive and non-repetitive regions. Exact solutions to the tiling problem become computationally infeasible when applied to large genomes, but successive optimizations are developed that allow their practical implementation. These include an efficient method for determining the degree of similarity of many oligonucleotide sequences over large genomes, and two algorithms for finding an optimal tile path composed of longer sequence tiles. The first algorithm, a dynamic programming approach, finds an optimal tiling in linear time and space; the second applies a heuristic search to reduce the space complexity to a constant requirement. A Web resource has also been developed, accessible at http://tiling.gersteinlab.org, to generate optimal tile paths from user-provided DNA sequences. PMID:16365382

  3. Controlled nucleation and growth of DNA tile arrays within prescribed DNA origami frames and their dynamics.

    PubMed

    Li, Wei; Yang, Yang; Jiang, Shuoxing; Yan, Hao; Liu, Yan

    2014-03-12

    Controlled nucleation of nanoscale building blocks by geometrically defined seeds implanted in DNA nanoscaffolds represents a unique strategy to study and understand the dynamic processes of molecular self-assembly. Here we utilize a two-dimensional DNA origami frame with a hollow interior and selectively positioned DNA hybridization seeds to control the self-assembly of DNA tile building blocks, where the small DNA tiles are directed to fill the interior of the frame through prescribed sticky end interactions. This design facilitates the construction of DNA origami/array hybrids that adopt the overall shape and dimensions of the origami frame, forming a 2D array in the core consisting of a large number of simple repeating DNA tiles. The formation of the origami/array hybrid was characterized with atomic force microscopy, and the nucleation dynamics were monitored by serial AFM scanning and fluorescence spectroscopy, which revealed faster kinetics of growth within the frame as compared to growth without the presence of a frame. Our study provides insight into the fundamental behavior of DNA-based self-assembling systems. PMID:24575893

  4. Comparative study of WLS fibres for the ATLAS Tile Calorimeter

    NASA Astrophysics Data System (ADS)

    Gomes, A.; David, M.; Henriques, A.; Maio, A.

    1998-02-01

    The Wave Length Shifting (WLS) fibres are one of the most important components of the ATLAS barrel hadronic tile calorimeter (Tilecal). The fibres collect the hght produced in the injection molded scintillating tiles and transport it to the photomultipliers. Parameters like attenuation length and light yield are important, as well as flexibility and radiation hardness. Comparative results of WLS fibres produced by Bicron, Kuraray and Pol.Hi.Tech are presented. The performance of the fibres BCF91A from Bicron and S048 from Pol.Hi.Tech was significatively improved, but the most performant are still the double clad Y11 fibres from Kuraray.

  5. Comparative study of WLS fibres for the ATLAS tile calorimeter

    NASA Astrophysics Data System (ADS)

    Gomes, A.; David, M.; Henriques, A.; Maio, A.

    1997-02-01

    The Wave Length Shifting (WLS) fibres are one of the most important components of the ATLAS barrel hadronic tile calorimeter (Tilecal). The fibres collect the light produced in the injection molded scintillating tiles and transport it to the photomultipliers. Parameters like attenuation length and light yield are important, as well as flexibility and radiation hardness. Comparative results of WLS fibres produced by Bicron, Kuraray and Pol.Hi.Tech are presented. The performance of the fibres BCF91A from Bicron and S048 from Pol.Hi.Tech was significatively improved, but the most performant are still the double clad Y11 fibres from Kuraray.

  6. Aerodynamic heating in gaps of thermal protection system tile arrays in laminar and turbulent boundary layers

    NASA Technical Reports Server (NTRS)

    Avery, D. E.

    1978-01-01

    An experimental heat-transfer investigation was conducted on two staggered arrays of metallic tiles in laminar and turbulent boundary layers. This investigation was conducted for two purposes. The impingement heating distribution where flow in a longitudinal gap intersects a transverse gap and impinges on a downstream blocking tile was defined. The influence of tile and gap geometries was analyzed to develop empirical relationships for impingement heating in laminar and turbulent boundary layers. Tests were conducted in a high temperature structures tunnel at a nominal Mach number of 7, a nominal total temperature of 1800 K, and free-stream unit Reynolds numbers from 1.0 x 10 million to 4.8 x 10 million per meter. The test results were used to assess the impingement heating effects produced by parameters that include gap width, longitudinal gap length, slope of the tile forward-facing wall, boundary-layer displacement thickness, Reynolds number, and local surface pressure.

  7. Heat transfer to surface and gaps of RSI tile arrays in turbulent flow at Mach 10.3

    NASA Technical Reports Server (NTRS)

    Throckmorton, D. A.

    1974-01-01

    Heat transfer to gap walls and surface of a simulated reusable surface insulation (RSI) tile array are presented. The data were obtained in the thick, turbulent tunnel wall boundary layer of the Langley Continuous Flow Hypersonic Tunnel at a freestream Mach number of 10.3 and a freestream unit Reynolds number of one million. Pertinent test variables were: (1) tile array orientation (staggered and in-line), (2) gap width, (3) flow angularity, and (4) tile mismatch.

  8. Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC) and its application for DNA methylation analysis

    PubMed Central

    Tomazou, Eleni M; Rakyan, Vardhman K; Lefebvre, Gregory; Andrews, Robert; Ellis, Peter; Jackson, David K; Langford, Cordelia; Francis, Matthew D; Bäckdahl, Liselotte; Miretti, Marcos; Coggill, Penny; Ottaviani, Diego; Sheer, Denise; Murrell, Adele; Beck, Stephan

    2008-01-01

    Background The major histocompatibility complex (MHC) is essential for human immunity and is highly associated with common diseases, including cancer. While the genetics of the MHC has been studied intensively for many decades, very little is known about the epigenetics of this most polymorphic and disease-associated region of the genome. Methods To facilitate comprehensive epigenetic analyses of this region, we have generated a genomic tiling array of 2 Kb resolution covering the entire 4 Mb MHC region. The array has been designed to be compatible with chromatin immunoprecipitation (ChIP), methylated DNA immunoprecipitation (MeDIP), array comparative genomic hybridization (aCGH) and expression profiling, including of non-coding RNAs. The array comprises 7832 features, consisting of two replicates of both forward and reverse strands of MHC amplicons and appropriate controls. Results Using MeDIP, we demonstrate the application of the MHC array for DNA methylation profiling and the identification of tissue-specific differentially methylated regions (tDMRs). Based on the analysis of two tissues and two cell types, we identified 90 tDMRs within the MHC and describe their characterisation. Conclusion A tiling array covering the MHC region was developed and validated. Its successful application for DNA methylation profiling indicates that this array represents a useful tool for molecular analyses of the MHC in the context of medical genomics. PMID:18513384

  9. Hypergeometric analysis of tiling-array and sequence data: detection and interpretation of peaks.

    PubMed

    Taskesen, Erdogan; Hoogeboezem, Remco; Delwel, Ruud; Reinders, Marcel Jt

    2013-01-01

    Probing protein-deoxyribonucleic acid (DNA) is gaining popularity as it sheds light on molecular mechanisms that regulate the expression of genes. Currently, tiling-arrays and next-generation sequencing technology can be used to measure these interactions. Both methods generate a signal over the genome in which contiguous regions of peaks on the genome represent the presence of an interacting molecule. Many methods do exist to identify functional regions of interest (ROIs) on the genome. However the detection of ROIs are often not an end-point in research questions and it therefore requires data dragging between tools to relate the ROIs to information present in databases, such as gene-ontology, pathway information, or enrichment of certain genomic content. We introduce hypergeometric analysis of tiling-array and sequence data (HATSEQ), a powerful tool that accurately identifies functional ROIs on the genome where a genomic signal significantly deviates from the general genome-wide behavior. HATSEQ also includes a number of built-in post-analyses with which biological meaning can be attached to the detected ROIs in terms of gene pathways and de-novo motif analysis, and provides different visualizations and statistical summaries for the detected ROIs. In addition, HATSEQ has an intuitive graphic user interface that lowers the barrier for researchers to analyze their data without the need of scripting languages. We compared the results of HATSEQ against two other popular chromatin immunoprecipitation sequencing (ChIP-Seq) methods and observed overlap in the detected ROIs but HATSEQ is more specific in delineating the peak boundaries. We also discuss the versatility of HATSEQ by using a Signal Transducer and Activator of Transcription 1 (STAT1) ChIP-Seq data-set, and show that the detected ROIs are highly specific for the expected STAT1 binding motif. HATSEQ is freely available at: http://hema13.erasmusmc.nl/index.php/HATSEQ. PMID:24187504

  10. Hypergeometric analysis of tiling-array and sequence data: detection and interpretation of peaks

    PubMed Central

    Taskesen, Erdogan; Hoogeboezem, Remco; Delwel, Ruud; Reinders, Marcel JT

    2013-01-01

    Probing protein-deoxyribonucleic acid (DNA) is gaining popularity as it sheds light on molecular mechanisms that regulate the expression of genes. Currently, tiling-arrays and next-generation sequencing technology can be used to measure these interactions. Both methods generate a signal over the genome in which contiguous regions of peaks on the genome represent the presence of an interacting molecule. Many methods do exist to identify functional regions of interest (ROIs) on the genome. However the detection of ROIs are often not an end-point in research questions and it therefore requires data dragging between tools to relate the ROIs to information present in databases, such as gene-ontology, pathway information, or enrichment of certain genomic content. We introduce hypergeometric analysis of tiling-array and sequence data (HATSEQ), a powerful tool that accurately identifies functional ROIs on the genome where a genomic signal significantly deviates from the general genome-wide behavior. HATSEQ also includes a number of built-in post-analyses with which biological meaning can be attached to the detected ROIs in terms of gene pathways and de-novo motif analysis, and provides different visualizations and statistical summaries for the detected ROIs. In addition, HATSEQ has an intuitive graphic user interface that lowers the barrier for researchers to analyze their data without the need of scripting languages. We compared the results of HATSEQ against two other popular chromatin immunoprecipitation sequencing (ChIP-Seq) methods and observed overlap in the detected ROIs but HATSEQ is more specific in delineating the peak boundaries. We also discuss the versatility of HATSEQ by using a Signal Transducer and Activator of Transcription 1 (STAT1) ChIP-Seq data-set, and show that the detected ROIs are highly specific for the expected STAT1 binding motif. HATSEQ is freely available at: http://hema13.erasmusmc.nl/index.php/HATSEQ. PMID:24187504

  11. Pressure gradient effects on heat transfer to reusable surface insulation tile-array gaps

    NASA Technical Reports Server (NTRS)

    Throckmorton, D. A.

    1975-01-01

    An experimental investigation was performed to determine the effect of pressure gradient on the heat transfer within space shuttle reusable surface insulation (RSI) tile-array gaps under thick, turbulent boundary-layer conditions. Heat-transfer and pressure measurements were obtained on a curved array of full-scale simulated RSI tiles in a tunnel-wall boundary layer at a nominal free-stream Mach number and free-stream Reynolds numbers. Transverse pressure gradients of varying degree were induced over the model surface by rotating the curved array with respect to the flow. Definition of the tunnel-wall boundary-layer flow was obtained by measurement of boundary-layer pitot pressure profiles, wall pressure, and heat transfer. Flat-plate heat-transfer data were correlated and a method was derived for prediction of heat transfer to a smooth curved surface in the highly three-dimensional tunnel-wall boundary-layer flow. Pressure on the floor of the RSI tile-array gap followed the trends of the external surface pressure. Heat transfer to the surface immediately downstream of a transverse gap is higher than that for a smooth surface at the same location. Heating to the wall of a transverse gap, and immediately downstream of it, at its intersection with a longitudinal gap is significantly greater than that for the simple transverse gap.

  12. X-chromosome tiling path array detection of copy number variants in patients with chromosome X-linked mental retardation

    PubMed Central

    Madrigal, I; Rodríguez-Revenga, L; Armengol, L; González, E; Rodriguez, B; Badenas, C; Sánchez, A; Martínez, F; Guitart, M; Fernández, I; Arranz, JA; Tejada, MI; Pérez-Jurado, LA; Estivill, X; Milà, M

    2007-01-01

    Background Aproximately 5–10% of cases of mental retardation in males are due to copy number variations (CNV) on the X chromosome. Novel technologies, such as array comparative genomic hybridization (aCGH), may help to uncover cryptic rearrangements in X-linked mental retardation (XLMR) patients. We have constructed an X-chromosome tiling path array using bacterial artificial chromosomes (BACs) and validated it using samples with cytogenetically defined copy number changes. We have studied 54 patients with idiopathic mental retardation and 20 controls subjects. Results Known genomic aberrations were reliably detected on the array and eight novel submicroscopic imbalances, likely causative for the mental retardation (MR) phenotype, were detected. Putatively pathogenic rearrangements included three deletions and five duplications (ranging between 82 kb to one Mb), all but two affecting genes previously known to be responsible for XLMR. Additionally, we describe different CNV regions with significant different frequencies in XLMR and control subjects (44% vs. 20%). Conclusion This tiling path array of the human X chromosome has proven successful for the detection and characterization of known rearrangements and novel CNVs in XLMR patients. PMID:18047645

  13. From nonfinite to finite 1D arrays of origami tiles.

    PubMed

    Wu, Tsai Chin; Rahman, Masudur; Norton, Michael L

    2014-06-17

    CONSPECTUS: DNA based nanotechnology provides a basis for high-resolution fabrication of objects almost without physical size limitations. However, the pathway to large-scale production of large objects is currently unclear. Operationally, one method forward is to use high information content, large building blocks, which can be generated with high yield and reproducibility. Although flat DNA origami naturally invites comparison to pixels in zero, one, and two dimensions and voxels in three dimensions and has provided an excellent mechanism for generating blocks of significant size and complexity and a multitude of shapes, the field is young enough that a single "brick" has not become the standard platform used by the majority of researchers in the field. In this Account, we highlight factors we considered that led to our adoption of a cross-shaped, non-space-filling origami species, designed by Dr. Liu of the Seeman laboratory, as the building block ideal for use in the fabrication of finite one-dimensional arrays. Three approaches that can be employed for uniquely coding origami-origami linkages are presented. Such coding not only provides the energetics for tethering the species but also uniquely designates the relative orientation of the origami building blocks. The strength of the coding approach implemented in our laboratory is demonstrated using examples of oligomers ranging from finite multimers composed of four, six, and eight origami structures to semi-infinite polymers (100mers). Two approaches to finite array design and the series of assembly steps that each requires are discussed. The process of AFM observation for array characterization is presented as a critical case study. For these soft species, the array images do not simply present the solution phase geometry projected onto a two-dimensional surface. There are additional perturbations associated with fluidic forces associated with sample preparation. At this time, reconstruction of the "true" or

  14. Characterization of a 16 Mb interstitial chromosome 7q21 deletion by tiling path array CGH.

    PubMed

    Tzschach, Andreas; Menzel, Corinna; Erdogan, Fikret; Schubert, Marei; Hoeltzenbein, Maria; Barbi, Gotthold; Petzenhauser, Christine; Ropers, Hans-Hilger; Ullmann, Reinhard; Kalscheuer, Vera

    2007-02-15

    We report on a 42-year-old female patient with an interstitial 16 Mb deletion in 7q21.1-21.3 and a balanced reciprocal translocation between chromosomes 6 and 7 [karyotype 46,XX,t(6;7)(q23.3;q32.3)del(7)(q21.1q21.3)de novo]. We characterized the size and position of the deletion by tiling path array comparative genomic hybridization (CGH), and we mapped the translocation breakpoints on chromosomes 6 and 7 by FISH. The clinical features of this patient-severe mental retardation, short stature, microcephaly and deafness-are in accordance with previously reported patients with 7q21 deletions. Chromosome band 7q21.3 harbors a locus for split hand/split foot malformation (SHFM1), and part of this locus, including the SHFM1 candidate genes SHFM1, DLX5, and DLX6, is deleted. The absence of limb abnormalities in this patient suggests either a location of the SHFM1 causing factor distal to this deletion, or reduced penetrance of haploinsufficiency of a SHFM1 factor within the deleted interval. PMID:17230488

  15. Nutrient export in tile drainage: Comparing manure injection to fertigation

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Subsurface tile drainage of agricultural land is implicated as a major source of nutrients to the Mississippi River. To protect water quality, land application of manure should maximize crop nutrient use and minimize nutrient loss. Weather constraints and regulations restrict the period during which...

  16. Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays

    NASA Technical Reports Server (NTRS)

    Stolc, Viktor; Samanta, Manoj Pratim; Tongprasit, Waraporn; Sethi, Himanshu; Liang, Shoudan; Nelson, David C.; Hegeman, Adrian; Nelson, Clark; Rancour, David; Bednarek, Sebastian; Ulrich, Eldon L.; Zhao, Qin; Wrobel, Russell L.; Newman, Craig S.; Fox, Brian G.; Phillips, George N Jr; Markley, John L.; Sussman, Michael R.

    2005-01-01

    Using a maskless photolithography method, we produced DNA oligonucleotide microarrays with probe sequences tiled throughout the genome of the plant Arabidopsis thaliana. RNA expression was determined for the complete nuclear, mitochondrial, and chloroplast genomes by tiling 5 million 36-mer probes. These probes were hybridized to labeled mRNA isolated from liquid grown T87 cells, an undifferentiated Arabidopsis cell culture line. Transcripts were detected from at least 60% of the nearly 26,330 annotated genes, which included 151 predicted genes that were not identified previously by a similar genome-wide hybridization study on four different cell lines. In comparison with previously published results with 25-mer tiling arrays produced by chromium masking-based photolithography technique, 36-mer oligonucleotide probes were found to be more useful in identifying intron-exon boundaries. Using two-dimensional HPLC tandem mass spectrometry, a small-scale proteomic analysis was performed with the same cells. A large amount of strongly hybridizing RNA was found in regions "antisense" to known genes. Similarity of antisense activities between the 25-mer and 36-mer data sets suggests that it is a reproducible and inherent property of the experiments. Transcription activities were also detected for many of the intergenic regions and the small RNAs, including tRNA, small nuclear RNA, small nucleolar RNA, and microRNA. Expression of tRNAs correlates with genome-wide amino acid usage.

  17. Utility of array comparative genomic hybridization in cytogenetic analysis.

    PubMed

    Singh, Rashmi R; Cheung, K-John J; Horsman, Douglas E

    2011-01-01

    Conventional comparative genomic hybridization (CGH), high-resolution oligonucleotide, and BAC array CGH have modernized the field of cytogenetics to enable access to unbalanced genomic aberrations such as whole or partial chromosomal gains and losses. The basic principle of array CGH involves hybridizing differentially labeled proband/test (e.g., tumor) and normal reference DNA on an array of oligonucleotide or BAC clones instead of normal metaphases as in conventional CGH. The sub-megabase resolution tiling BAC arrays are extremely useful for the analysis of acquired aberrations in cancer genomes. Array CGH can be extremely useful to identify the chromosomal makeup of marker and ring chromosomes, to define/delineate the precise location/bands involved in structural aberrations and the accurate localization of translocation breakpoints in both simple and complex karyotypes either alone or in combination with standard karyotype analysis. PMID:21431645

  18. Aerodynamic heating in large cavities in an array of RSI tiles. [for space shuttles

    NASA Technical Reports Server (NTRS)

    Hunt, L. R.

    1977-01-01

    A large panel of reusable surface insulation (RSI) tiles including lost tile cavities was aerothermally tested in the Langley 8 foot high temperature structures tunnel to determine both the heat load within the cavities and the structural performance of the RSI surrounding the cavities. Tests were conducted with a turbulent boundary layer at a nominal free stream Mach number of 6.6, a total temperature of 1800 K, a Reynolds number per meter of 5 million, and a dynamic pressure of 62 kPa. The maximum aerodynamic heating to the floor of the cavity was two to three times the normal surface heating. The cavity heating rates agreed with data from other facilities and were successfully correlated with an empirical equation. A zippering failure occurred to a tile downstream of a double tile cavity when the separated flow attached to the floor of the cavity and forced the tile from its position.

  19. Analysis of RNAseq datasets from a comparative infectious disease zebrafish model using GeneTiles bioinformatics.

    PubMed

    Veneman, Wouter J; de Sonneville, Jan; van der Kolk, Kees-Jan; Ordas, Anita; Al-Ars, Zaid; Meijer, Annemarie H; Spaink, Herman P

    2015-03-01

    We present a RNA deep sequencing (RNAseq) analysis of a comparison of the transcriptome responses to infection of zebrafish larvae with Staphylococcus epidermidis and Mycobacterium marinum bacteria. We show how our developed GeneTiles software can improve RNAseq analysis approaches by more confidently identifying a large set of markers upon infection with these bacteria. For analysis of RNAseq data currently, software programs such as Bowtie2 and Samtools are indispensable. However, these programs that are designed for a LINUX environment require some dedicated programming skills and have no options for visualisation of the resulting mapped sequence reads. Especially with large data sets, this makes the analysis time consuming and difficult for non-expert users. We have applied the GeneTiles software to the analysis of previously published and newly obtained RNAseq datasets of our zebrafish infection model, and we have shown the applicability of this approach also to published RNAseq datasets of other organisms by comparing our data with a published mammalian infection study. In addition, we have implemented the DEXSeq module in the GeneTiles software to identify genes, such as glucagon A, that are differentially spliced under infection conditions. In the analysis of our RNAseq data, this has led to the possibility to improve the size of data sets that could be efficiently compared without using problem-dedicated programs, leading to a quick identification of marker sets. Therefore, this approach will also be highly useful for transcriptome analyses of other organisms for which well-characterised genomes are available. PMID:25503064

  20. Efficient Tiled Loop Generation: D-Tiling

    NASA Astrophysics Data System (ADS)

    Kim, Daegon; Rajopadhye, Sanjay

    Tiling is an important loop optimization for exposing coarse-grained parallelism and enhancing data locality. Tiled loop generation from an arbitrarily shaped polyhedron is a well studied problem. Except for the special case of a rectangular iteration space, the tiled loop generation problem has been long believed to require heavy machinery such as Fourier-Motzkin elimination and projection, and hence to have an exponential complexity. In this paper we propose a simple and efficient tiled loop generation technique similar to that for a rectangular iteration space. In our technique, each loop bound is adjusted only once, syntactically and independently. Therefore, our algorithm runs linearly with the number of loop bounds. Despite its simplicity, we retain several advantages of recent tiled code generation schemes - unified generation for fixed, parameterized and hybrid tiled loops, scalability for multi-level tiled loop generation with the ability to separate full tiles at any levels, and compact code. We also explore various schemes for multi-level tiled loop generation. We formally prove the correctness of our scheme and experimentally validate that the efficiency of our technique is comparable to existing parameterized tiled loop generation approaches. Our experimental results also show that multi-level tiled loop generation schemes have an impact on performance of generated code. The fact that our scheme can be implemented without sophisticated machinery makes it well suited for autotuners and production compilers.

  1. Aerodynamic heating to the gaps and surfaces of simulated reusable-surface-insulation tile arrays in turbulent flow at Mach 6.6

    NASA Technical Reports Server (NTRS)

    Weinstein, I.; Avery, D. E.; Chapman, A. J.

    1975-01-01

    An experimental investigation was made on a simulated reusable-surface-insulation tile array in a turbulent boundary layer to determine aerodynamic-heating distributions representative of those expected on the surface of the shuttle orbiter during earth entry due to the presence of longitudinal and transverse surface gaps. The tests were conducted in an 8-foot high-temperature structures tunnel in a test medium of methane-air combustion products at a nominal Mach number of 6.6 and over a free-stream Reynolds number range from 2,000,000 to 4,900,000 per meter (600,000 to 1,500,000 per foot). The results were used to assess the aerodynamic heating effects produced by parameters that include gap width, boundary-layer displacement thickness, in-line and staggered tile arrangement, and tile protrusion.

  2. Interference Lattice-based Loop Nest Tilings for Stencil Computations

    NASA Technical Reports Server (NTRS)

    VanderWijngaart, Rob F.; Frumkin, Michael

    2000-01-01

    A common method for improving performance of stencil operations on structured multi-dimensional discretization grids is loop tiling. Tile shapes and sizes are usually determined heuristically, based on the size of the primary data cache. We provide a lower bound on the numbers of cache misses that must be incurred by any tiling, and a close achievable bound using a particular tiling based on the grid interference lattice. The latter tiling is used to derive highly efficient loop orderings. The total number of cache misses of a code is the sum of (necessary) cold misses and misses caused by elements being dropped from the cache between successive loads (replacement misses). Maximizing temporal locality is equivalent to minimizing replacement misses. Temporal locality of loop nests implementing stencil operations is optimized by tilings that avoid data conflicts. We divide the loop nest iteration space into conflict-free tiles, derived from the cache miss equation. The tiling involves the definition of the grid interference lattice an equivalence class of grid points whose images in main memory map to the same location in the cache-and the construction of a special basis for the lattice. Conflicts only occur on the boundaries of the tiles, unless the tiles are too thin. We show that the surface area of the tiles is bounded for grids of any dimensionality, and for caches of any associativity, provided the eccentricity of the fundamental parallelepiped (the tile spanned by the basis) of the lattice is bounded. Eccentricity is determined by two factors, aspect ratio and skewness. The aspect ratio of the parallelepiped can be bounded by appropriate array padding. The skewness can be bounded by the choice of a proper basis. Combining these two strategies ensures that pathologically thin tiles are avoided. They do not, however, minimize replacement misses per se. The reason is that tile visitation order influences the number of data conflicts on the tile boundaries. If two

  3. An experimental investigation of heat transfer to reusable surface insulation tile array gaps in a turbulent boundary layer with pressure gradient. M.S. Thesis

    NASA Technical Reports Server (NTRS)

    Throckmorton, D. A.

    1975-01-01

    An experimental investigation was performed to determine the effect of pressure gradient on the heat transfer to space shuttle reusable surface insulation (RSI) tile array gaps under thick, turbulent boundary layer conditions. Heat transfer and pressure measurements were obtained on a curved array of full-scale simulated RSI tiles in a tunnel wall boundary layer at a nominal freestream Mach number of 10.3 and freestream unit Reynolds numbers of 1.6, 3.3, and and 6.1 million per meter. Transverse pressure gradients were induced over the model surface by rotating the curved array with respect to the flow. Definition of the tunnel wall boundary layer flow was obtained by measurement of boundary layer pitot pressure profiles, and flat plate wall pressure and heat transfer. Flat plate wall heat transfer data were correlated and a method was derived for prediction of smooth, curved array heat transfer in the highly three-dimensional tunnel wall boundary layer flow and simulation of full-scale space shuttle vehicle pressure gradient levels was assessed.

  4. Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data

    PubMed Central

    2010-01-01

    Background Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is an assay used for investigating DNA-protein-binding or post-translational chromatin/histone modifications. As with all high-throughput technologies, it requires thorough bioinformatic processing of the data for which there is no standard yet. The primary goal is to reliably identify and localize genomic regions that bind a specific protein. Further investigation compares binding profiles of functionally related proteins, or binding profiles of the same proteins in different genetic backgrounds or experimental conditions. Ultimately, the goal is to gain a mechanistic understanding of the effects of DNA binding events on gene expression. Results We present a free, open-source R/Bioconductor package Starr that facilitates comparative analysis of ChIP-chip data across experiments and across different microarray platforms. The package provides functions for data import, quality assessment, data visualization and exploration. Starr includes high-level analysis tools such as the alignment of ChIP signals along annotated features, correlation analysis of ChIP signals with complementary genomic data, peak-finding and comparative display of multiple clusters of binding profiles. It uses standard Bioconductor classes for maximum compatibility with other software. Moreover, Starr automatically updates microarray probe annotation files by a highly efficient remapping of microarray probe sequences to an arbitrary genome. Conclusion Starr is an R package that covers the complete ChIP-chip workflow from data processing to binding pattern detection. It focuses on the high-level data analysis, e.g., it provides methods for the integration and combined statistical analysis of binding profiles and complementary functional genomics data. Starr enables systematic assessment of binding behaviour for groups of genes that are alingned along arbitrary genomic features. PMID:20398407

  5. Tiling Microarray Analysis Tools

    SciTech Connect

    Nix, Davis Austin

    2005-05-04

    TiMAT is a package of 23 command line Java applications for use in the analysis of Affymetrix tiled genomic microarray data. TiMAT enables: 1) Rebuilding the genome annotation for entire tiled arrays (repeat filtering, chromosomal coordinate assignment). 2) Post processing of oligo intensity values (quantile normalization, median scaling, PMMM transformation), 3) Significance testing (Wilcoxon rank sum and signed rank tests, intensity difference and ratio tests) and Interval refinement (filtering based on multiple statistics, overlap comparisons), 4) Data visualization (detailed thumbnail/zoomed view with Interval Plots and data export to Affymetrix's Integrated Genome Browser) and Data reports (spreadsheet summaries and detailed profiles)

  6. Computational Methods for the Analysis of Array Comparative Genomic Hybridization

    PubMed Central

    Chari, Raj; Lockwood, William W.; Lam, Wan L.

    2006-01-01

    Array comparative genomic hybridization (array CGH) is a technique for assaying the copy number status of cancer genomes. The widespread use of this technology has lead to a rapid accumulation of high throughput data, which in turn has prompted the development of computational strategies for the analysis of array CGH data. Here we explain the principles behind array image processing, data visualization and genomic profile analysis, review currently available software packages, and raise considerations for future software development. PMID:17992253

  7. Restriction Site Tiling Analysis: accurate discovery and quantitative genotyping of genome-wide polymorphisms using nucleotide arrays

    PubMed Central

    2010-01-01

    High-throughput genotype data can be used to identify genes important for local adaptation in wild populations, phenotypes in lab stocks, or disease-related traits in human medicine. Here we advance microarray-based genotyping for population genomics with Restriction Site Tiling Analysis. The approach simultaneously discovers polymorphisms and provides quantitative genotype data at 10,000s of loci. It is highly accurate and free from ascertainment bias. We apply the approach to uncover genomic differentiation in the purple sea urchin. PMID:20403197

  8. Small form factor full parallax tiled light field display

    NASA Astrophysics Data System (ADS)

    Alpaslan, Zahir Y.; El-Ghoroury, Hussein S.

    2015-03-01

    With the recent introduction of Ostendo's Quantum Photonic Imager (QPI) display technology, a very small pixel pitch, emissive display with high brightness and low power consumption became available. We used QPI's to create a high performance light field display tiles with a very small form factor. Using 8 of these QPI light field displays tiled in a 4x2 array we created a tiled full parallax light field display. Each individual light field display tile combines custom designed micro lens array layers with monochrome green QPIs. Each of the light field display tiles can address 1000 x 800 pixels placed under an array of 20 x 16 lenslets with 500 μm diameters. The light field display tiles are placed with small gaps to create a tiled display of approximately 46 mm (W) x 17 mm (H) x 2 mm (D) in mechanical dimensions. The prototype tiled full parallax light field display demonstrates small form factor, high resolution and focus cues.

  9. Tiling Microarray Analysis Tools

    Energy Science and Technology Software Center (ESTSC)

    2005-05-04

    TiMAT is a package of 23 command line Java applications for use in the analysis of Affymetrix tiled genomic microarray data. TiMAT enables: 1) Rebuilding the genome annotation for entire tiled arrays (repeat filtering, chromosomal coordinate assignment). 2) Post processing of oligo intensity values (quantile normalization, median scaling, PMMM transformation), 3) Significance testing (Wilcoxon rank sum and signed rank tests, intensity difference and ratio tests) and Interval refinement (filtering based on multiple statistics, overlap comparisons),more » 4) Data visualization (detailed thumbnail/zoomed view with Interval Plots and data export to Affymetrix's Integrated Genome Browser) and Data reports (spreadsheet summaries and detailed profiles)« less

  10. Empirical covariance modeling for 21 cm power spectrum estimation: A method demonstration and new limits from early Murchison Widefield Array 128-tile data

    NASA Astrophysics Data System (ADS)

    Dillon, Joshua S.; Neben, Abraham R.; Hewitt, Jacqueline N.; Tegmark, Max; Barry, N.; Beardsley, A. P.; Bowman, J. D.; Briggs, F.; Carroll, P.; de Oliveira-Costa, A.; Ewall-Wice, A.; Feng, L.; Greenhill, L. J.; Hazelton, B. J.; Hernquist, L.; Hurley-Walker, N.; Jacobs, D. C.; Kim, H. S.; Kittiwisit, P.; Lenc, E.; Line, J.; Loeb, A.; McKinley, B.; Mitchell, D. A.; Morales, M. F.; Offringa, A. R.; Paul, S.; Pindor, B.; Pober, J. C.; Procopio, P.; Riding, J.; Sethi, S.; Shankar, N. Udaya; Subrahmanyan, R.; Sullivan, I.; Thyagarajan, Nithyanandan; Tingay, S. J.; Trott, C.; Wayth, R. B.; Webster, R. L.; Wyithe, S.; Bernardi, G.; Cappallo, R. J.; Deshpande, A. A.; Johnston-Hollitt, M.; Kaplan, D. L.; Lonsdale, C. J.; McWhirter, S. R.; Morgan, E.; Oberoi, D.; Ord, S. M.; Prabu, T.; Srivani, K. S.; Williams, A.; Williams, C. L.

    2015-06-01

    The separation of the faint cosmological background signal from bright astrophysical foregrounds remains one of the most daunting challenges of mapping the high-redshift intergalactic medium with the redshifted 21 cm line of neutral hydrogen. Advances in mapping and modeling of diffuse and point source foregrounds have improved subtraction accuracy, but no subtraction scheme is perfect. Precisely quantifying the errors and error correlations due to missubtracted foregrounds allows for both the rigorous analysis of the 21 cm power spectrum and for the maximal isolation of the "EoR window" from foreground contamination. We present a method to infer the covariance of foreground residuals from the data itself in contrast to previous attempts at a priori modeling. We demonstrate our method by setting limits on the power spectrum using a 3 h integration from the 128-tile Murchison Widefield Array. Observing between 167 and 198 MHz, we find at 95% confidence a best limit of Δ2(k )<3.7 ×104 mK2 at comoving scale k =0.18 h Mpc-1 and at z =6.8 , consistent with existing limits.

  11. Preassembly Of Insulating Tiles

    NASA Technical Reports Server (NTRS)

    Izu, Y. D.; Yoshioka, E. N.; Rosario, T.

    1988-01-01

    Concept for preassembling high-temperature insulating tiles speeds and simplifies installation and repair and reduces damage from handling. Preassembly concept facilitates placement of tiles on gently contoured surfaces as well as on flat ones. Tiles bonded to nylon mesh with room-temperature-vulcanizing silicon rubber. Spacing between tiles is 0.03 in. Applications include boilers, kilns, and furnaces.

  12. Interlocking wettable ceramic tiles

    SciTech Connect

    Tabereaux, Jr., Alton T.; Fredrickson, Guy L.; Groat, Eric; Mroz, Thomas; Ulicny, Alan; Walker, Mark F.

    2005-03-08

    An electrolytic cell for the reduction of aluminum having a layer of interlocking cathode tiles positioned on a cathode block. Each tile includes a main body and a vertical restraining member to prevent movement of the tiles away from the cathode block during operation of the cell. The anode of the electrolytic cell may be positioned about 1 inch from the interlocking cathode tiles.

  13. Image Composition Engine for Tiles

    Energy Science and Technology Software Center (ESTSC)

    2011-08-22

    The Image Composition Engine for Tiles (lceT) is a high-performance sort-last parallel rendering library. It is designed to be used in parallel applications requiring rendering. The primary purpose of IceT is to be integrated into parallel visualization applications such as ParaView to provide parallel rendering capabilities. The Image Composition Engine for Tiles (lceT) is a high-performance sort-last parallel rendering library. IceT uses a "sort-Iasf' approach to rendering. Each process in a parallel application independently rendersmore » a local piece of geometry. The resulting images are given to IceT, and IceT combines the images together to form a single cohesive image. Ice T is also capable of driving tiled displays, largeformat displays comprising an array of smaller displays. To this end IceT can collect the smaller tile images and organize them such that the entire tiled display can be driven. Ice T takes advantage of spatial coherence in geometry by identifying empty regions of the display and reducing the overall required work.« less

  14. Image Composition Engine for Tiles

    SciTech Connect

    Moreland, Kenneth

    2011-08-22

    The Image Composition Engine for Tiles (lceT) is a high-performance sort-last parallel rendering library. It is designed to be used in parallel applications requiring rendering. The primary purpose of IceT is to be integrated into parallel visualization applications such as ParaView to provide parallel rendering capabilities. The Image Composition Engine for Tiles (lceT) is a high-performance sort-last parallel rendering library. IceT uses a "sort-Iasf' approach to rendering. Each process in a parallel application independently renders a local piece of geometry. The resulting images are given to IceT, and IceT combines the images together to form a single cohesive image. Ice T is also capable of driving tiled displays, largeformat displays comprising an array of smaller displays. To this end IceT can collect the smaller tile images and organize them such that the entire tiled display can be driven. Ice T takes advantage of spatial coherence in geometry by identifying empty regions of the display and reducing the overall required work.

  15. A comparative study of the radiation hardness of plastic scintillators for the upgrade of the Tile Calorimeter of the ATLAS detector

    NASA Astrophysics Data System (ADS)

    Liao, S.; Erasmus, R.; Jivan, H.; Pelwan, C.; Peters, G.; Sideras-Haddad, E.

    2015-10-01

    The influence of radiation on the light transmittance of plastic scintillators was studied experimentally. The high optical transmittance property of plastic scintillators makes them essential in the effective functioning of the Tile calorimeter of the ATLAS detector at CERN. This significant role played by the scintillators makes this research imperative in the movement towards the upgrade of the tile calorimeter. The radiation damage of polyvinyl toluene (PVT) based plastic scintillators was studied, namely, EJ-200, EJ-208 and EJ-260, all manufactured and provided to us by ELJEN technology. In addition, in order to compare to scintillator brands actually in use at the ATLAS detector currently, two polystyrene (PS) based scintillators and an additional PVT based scintillator were also scrutinized in this study, namely, Dubna, Protvino and Bicron, respectively. All the samples were irradiated using a 6 MeV proton beam at different doses at iThemba LABS Gauteng. The radiation process was planned and mimicked by doing simulations using a SRIM program. In addition, transmission spectra for the irradiated and unirradiated samples of each grade were obtained, observed and analyzed.

  16. Hemispheric Imaging of Galactic Neutral Hydrogen with a Phased Array Antenna System

    NASA Astrophysics Data System (ADS)

    Wijnholds, Stefan J.; De Bruyn, A. Ger; Bregman, Jaap D.; Bij De Vaate, Jan Geralt

    2004-06-01

    The thousand element array (THEA) system is a phased array system consisting of 1 m2 tiles having 64 Vivaldi elements each, arranged on a regular 8-by-8 grid, which has been developed as a demonstrator of technology and applicability for SKA. In this paper we present imaging results of Galactic neutral hydrogen with THEA. Measurements have been taken using a dense 2-by-2 array of four tiles as a four tile adder. The results are compared with results from the Leiden-Dwingeloo Survey, showing qualitative agreement, but also indicating that further studies are needed on the instrumental characteristics.

  17. Mutation Screening and Array Comparative Genomic Hybridization Using a 180K Oligonucleotide Array in VACTERL Association

    PubMed Central

    Winberg, Johanna; Gustavsson, Peter; Papadogiannakis, Nikos; Sahlin, Ellika; Bradley, Frideborg; Nordenskjöld, Edvard; Svensson, Pär-Johan; Annerén, Göran; Iwarsson, Erik; Nordgren, Ann; Nordenskjöld, Agneta

    2014-01-01

    In order to identify genetic causes of VACTERL association (V vertebral defects, A anorectal malformations, C cardiac defects, T tracheoesofageal fistula, E esophageal atresia, R renal anomalies, L limb deformities), we have collected DNA samples from 20 patients diagnosed with VACTERL or with a VACTERL-like phenotype as well as samples from 19 aborted fetal cases with VACTERL. To investigate the importance of gene dose alterations in the genetic etiology of VACTERL association we have performed a systematic analysis of this cohort using a 180K array comparative genomic hybridization (array-CGH) platform. In addition, to further clarify the significance of PCSK5, HOXD13 and CHD7 genes in the VACTERL phenotype, mutation screening has been performed. We identified pathogenic gene dose imbalances in two fetal cases; a hemizygous deletion of the FANCB gene and a (9;18)(p24;q12) unbalanced translocation. In addition, one pathogenic mutation in CHD7 was detected, while no apparent disease-causing mutations were found in HOXD13 or PCSK5. Our study shows that although large gene dose alterations do not seem to be a common cause in VACTERL association, array-CGH is still important in clinical diagnostics to identify disease cause in individual cases. PMID:24416387

  18. Handmade Tile Mosaics

    ERIC Educational Resources Information Center

    Keeler, Rusty

    2007-01-01

    Just like the classroom, children's outdoor environments should be filled with artistic creations that add sparkle and imagination to the space. One of the author's favorite ways to add art to the outdoors is by installing a mosaic mural of child-made tiles. The process of making the tiles is fun for all; each tile is a charming work of art in…

  19. Fibonacci words, hyperbolic tilings and grossone

    NASA Astrophysics Data System (ADS)

    Margenstern, Maurice

    2015-04-01

    In this paper, we study the contribution of the theory of grossone to the study of infinite Fibonacci words, combining this tool with the help of a particular tiling of the hyperbolic plane: the tiling { 7, 3 } , called the heptagrid. With the help of the numeral system based on grossone, we obtain a richer family of infinite Fibonacci words compared with the traditional approach.

  20. Boeing's High Voltage Solar Tile Test Results

    NASA Technical Reports Server (NTRS)

    Reed, Brian J.; Harden, David E.; Ferguson, Dale C.; Snyder, David B.

    2002-01-01

    Real concerns of spacecraft charging and experience with solar array augmented electrostatic discharge arcs on spacecraft have minimized the use of high voltages on large solar arrays despite numerous vehicle system mass and efficiency advantages. Boeing's solar tile (patent pending) allows high voltage to be generated at the array without the mass and efficiency losses of electronic conversion. Direct drive electric propulsion and higher power payloads (lower spacecraft weight) will benefit from this design. As future power demand grows, spacecraft designers must use higher voltage to minimize transmission loss and power cable mass for very large area arrays. This paper will describe the design and discuss the successful test of Boeing's 500-Volt Solar Tile in NASA Glenn's Tenney chamber in the Space Plasma Interaction Facility. The work was sponsored by NASA's Space Solar Power Exploratory Research and Technology (SERT) Program and will result in updated high voltage solar array design guidelines being published.

  1. Emittance measurements of RCG coated Shuttle tiles

    NASA Technical Reports Server (NTRS)

    Bouslog, Stanley A.; Cunnington, George R., Jr.

    1992-01-01

    The spectral and total normal emittance of the Reaction Cured Glass (RCG) coating used on Shuttle tiles has been measured for surface temperatures of 300 to 1905 K. These measurements were made on two virgin and two flown Shuttle tile samples. Room temperature directional emittance data were also obtained and used to determine the total hemispherical emittance of RCG as a function of temperature. The data obtained from this calculation indicate that the total hemispherical emittance decreases from a room temperature value of 0.83 to a value of 0.76 at 1905 K. The flown Shuttle tiles exhibited a change in the spectral distribution of emittance compared to that of the virgin tile, but no significant trends in the total emittance from a virgin to a flown tile could be established.

  2. Solar-energy treatment of ceramic tile. Final report

    SciTech Connect

    Harris, J.N.; Clayton, M.E.

    1981-12-01

    The 400 kW Advanced Components Test Facility was used to provide a concentrated source of solar energy for firing ceramic wall tile. A domed top cylindrical cavity with a white refractory fiber lining provided diffuse reflection of the concentrated solar beam directly onto the upper surface of the unfired wall tile. The tile were placed directly on the cavity floor in a circular pattern, centered at 45/sup 0/ intervals so that eight tile could be fired at one time. The tile and cavity walls were instrumented with thermocouples, and pyrometric cones were used to determine temperature distribution within the cavity. The glazed and unglazed solar fired tiles were subjected to standard ceramic testing procedures to determine: flatness, modulus of rupture, water absorption, porosity, bulk density, apparent specific gravity, percent linear thermal expansion and crystalline phases present in the fired bodies. These data were compared with the same data for commercial fired tiles from the same batch of raw materials. The glazed tile surfaces were compared with commercially fired tile for reflectance and color match. The major problems encountered were: cracking by thermal shock, and uneven shrinkage and glaze maturity across individual tile. The cavity also failed to provide even heating at all eight tile positions. An alternate air heat exchanger system is recommended to fire the tile by convection rather than direct radiation.

  3. Comparing viewer and array mental rotations in different planes

    NASA Technical Reports Server (NTRS)

    Carpenter, M.; Proffitt, D. R.; Kaiser, M. K. (Principal Investigator)

    2001-01-01

    Participants imagined rotating either themselves or an array of objects that surrounded them. Their task was to report on the egocentric position of an item in the array following the imagined rotation. The dependent measures were response latency and number of errors committed. Past research has shown that self-rotation is easier than array rotation. However, we found that imagined egocentric rotations were as difficult to imagine as rotations of the environment when people performed imagined rotations in the midsagittal or coronal plane. The advantages of imagined self-rotations are specific to mental rotations performed in the transverse plane.

  4. A Comparative Study of Inspection Techniques for Array Packages

    NASA Technical Reports Server (NTRS)

    Mohammed, Jelila; Green, Christopher

    2008-01-01

    This viewgraph presentation reviews the inspection techniques for Column Grid Array (CGA) packages. The CGA is a method of chip scale packaging using high temperature solder columns to attach part to board. It is becoming more popular over other techniques (i.e. quad flat pack (QFP) or ball grid array (BGA)). However there are environmental stresses and workmanship challenges that require good inspection techniques for these packages.

  5. Nucleosome positioning from tiling microarray data

    PubMed Central

    Yassour, Moran; Kaplan, Tommy; Jaimovich, Ariel; Friedman, Nir

    2008-01-01

    Motivation: The packaging of DNA around nucleosomes in eukaryotic cells plays a crucial role in regulation of gene expression, and other DNA-related processes. To better understand the regulatory role of nucleosomes, it is important to pinpoint their position in a high (5–10 bp) resolution. Toward this end, several recent works used dense tiling arrays to map nucleosomes in a high-throughput manner. These data were then parsed and hand-curated, and the positions of nucleosomes were assessed. Results: In this manuscript, we present a fully automated algorithm to analyze such data and predict the exact location of nucleosomes. We introduce a method, based on a probabilistic graphical model, to increase the resolution of our predictions even beyond that of the microarray used. We show how to build such a model and how to compile it into a simple Hidden Markov Model, allowing for a fast and accurate inference of nucleosome positions. We applied our model to nucleosomal data from mid-log yeast cells reported by Yuan et al. and compared our predictions to those of the original paper; to a more recent method that uses five times denser tiling arrays as explained by Lee et al.; and to a curated set of literature-based nucleosome positions. Our results suggest that by applying our algorithm to the same data used by Yuan et al. our fully automated model traced 13% more nucleosomes, and increased the overall accuracy by about 20%. We believe that such an improvement opens the way for a better understanding of the regulatory mechanisms controlling gene expression, and how they are encoded in the DNA. Contact: nir@cs.huji.ac.il PMID:18586706

  6. Rewaterproofing Silica Tiles

    NASA Technical Reports Server (NTRS)

    Lleger, L. J.; Wade, D. C.

    1983-01-01

    Waterproofing agent, vaporized in bubbler transported by gas flowing in system and deposits in pores of tiles. Vapor carried through hole of approximately 1/16 inch (1.6.mm) diameter made in tile coating. Technique used to waterproof buildups (concrete and brick) and possibly fabrics.

  7. Array-based comparative genomic hybridization (array CGH) for rapid prenatal diagnosis of cytogenetic abnormalities

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We have shown in a prospective validation study that an array CGH test was highly accurate for rapid detection of chromosomal aneuploidies and deletions or duplications on fetal DNA samples in a clinical prenatal diagnostic setting. Here we present our updated "post-validation phase" experience with...

  8. High-Z Tile Arrays in the DIII-D Divertor Region for Studying SOL/Edge Transport and Material Migration

    NASA Astrophysics Data System (ADS)

    Unterberg, E. A.; Stangeby, P. G.; Buchenaur, D. A.; Hollmann, E. M.; Guo, H. Y.; Thomas, D. M.; Leonard, A. W.

    2015-11-01

    Understanding the compatibility of high-Z plasma facing components (PFCs) in the divertor region with high performance (H-mode) tokamak (e.g. AT) operation is still an open issue in fusion research. Specifically with respect to high-Z, it is desirable to determine: (i) impurity transport in the edge plasma and (ii) migration across PFC surfaces as both these mechanisms can in-turn contaminate the confined plasma and limit performance. To address this uncertainty, complete toroidal rows of high-Z metal-coated carbon tiles will be installed at several poloidal locations in the DIII-D divertor. This effort will aid in the identification and characterization of high-Z: (i) source location and (ii) migration pathways. Particularly, experiments will be carried out using matched plasma conditions with/without ELM control to identify the role of ELMs. Work supported by the US DOE under DE-AC05-00OR22725, DE-AC04-94AL85000, DE-FG02-07ER54917, DE-FC02-04ER54698.

  9. Penrose tilings as model sets

    NASA Astrophysics Data System (ADS)

    Shutov, A. V.; Maleev, A. V.

    2015-11-01

    The Baake construction, based on generating a set of vertices of Penrose tilings as a model set, is refined. An algorithm and a corresponding computer program for constructing an uncountable set of locally indistinguishable Penrose tilings are developed proceeding from this refined construction. Based on an analysis of the parameters of tiling vertices, 62 versions of rhomb combinations at the tiling center are determined. The combinatorial structure of Penrose tiling worms is established. A concept of flip transformations of tilings is introduced that makes it possible to construct Penrose tilings that cannot be implemented in the Baake construction.

  10. Voronoi spiral tilings

    NASA Astrophysics Data System (ADS)

    Yamagishi, Yoshikazu; Sushida, Takamichi; Hizume, Akio

    2015-04-01

    The parameter set of Voronoi spiral tilings gives a dual of van Iterson's bifurcation diagram for phyllotactic spirals. We study the Voronoi tilings for the Bernoulli spiral site sets, as the simplest spirals in the centric representation with similarity symmetry. Their parameter set is composed of a family of real algebraic curves in the complex plane, with the Farey sequence structure. This naturally extends to the parameter set for multiple tilings, i.e., the tilings of the covering spaces of the punctured plane. We show the denseness of the parameters z = reiθ for quadrilateral Voronoi spiral multiple tilings. The techniques of dynamical systems are applied to the group of similarity symmetry. The parastichy numbers and the distortion of the Voronoi regions depend on the rational approximations of θ/2π. We consider the limit set of the shapes of the quadrilateral tiles by taking the limit as r → 1, with θ fixed. If θ/2π is a quadratic irrational number, then the limit set is a finite set of rectangles. In particular, if θ/2π is linearly equivalent to the golden section, then the limit is the square.

  11. Widespread, focal copy number variations (CNV) and whole chromosome aneuploidies in Trypanosoma cruzi strains revealed by array comparative genomic hybridization

    PubMed Central

    2011-01-01

    Background Trypanosoma cruzi is a protozoan parasite and the etiologic agent of Chagas disease, an important public health problem in Latin America. T. cruzi is diploid, almost exclusively asexual, and displays an extraordinarily diverse population structure both genetically and phenotypically. Yet, to date the genotypic diversity of T. cruzi and its relationship, if any, to biological diversity have not been studied at the whole genome level. Results In this study, we used whole genome oligonucleotide tiling arrays to compare gene content in biologically disparate T. cruzi strains by comparative genomic hybridization (CGH). We observed that T. cruzi strains display widespread and focal copy number variations (CNV) and a substantially greater level of diversity than can be adequately defined by the current genetic typing methods. As expected, CNV were particularly frequent in gene family-rich regions containing mucins and trans-sialidases but were also evident in core genes. Gene groups that showed little variation in copy numbers among the strains tested included those encoding protein kinases and ribosomal proteins, suggesting these loci were less permissive to CNV. Moreover, frequent variation in chromosome copy numbers were observed, and chromosome-specific CNV signatures were shared by genetically divergent T. cruzi strains. Conclusions The large number of CNV, over 4,000, reported here uphold at a whole genome level the long held paradigm of extraordinary genome plasticity among T. cruzi strains. Moreover, the fact that these heritable markers do not parse T. cruzi strains along the same lines as traditional typing methods is strongly suggestive of genetic exchange playing a major role in T. cruzi population structure and biology. PMID:21385342

  12. Array Comparative Genomic Hybridizations: Assessing the ability to recapture evolutionary relationships using an in silico approach

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Comparative Genomic Hybridization (CGH) with DNA microarrays has many biological applications including surveys of copy number changes in tumorigenesis, species detection and identification, and functional genomics studies among related organisms. Array CGH has also been used to infer phylogenetic r...

  13. Tiling Motion Patches.

    PubMed

    Hyun, Kyunglyul; Kim, Manmyung; Hwang, Youngseok; Lee, Jehee

    2013-05-01

    Simulating multiple character interaction is challenging because character actions must be carefully coordinated to align their spatial locations and synchronized with each other. We present an algorithm to create a dense crowd of virtual characters interacting with each other. The interaction may involve physical contacts, such as hand shaking, hugging, and carrying a heavy object collaboratively. We address the problem by collecting deformable motion patches, each of which describes an episode of multiple interacting characters, and tiling them spatially and temporally. The tiling of motion patches generates a seamless simulation of virtual characters interacting with each other in a non-trivial manner. Our tiling algorithm uses a combination of stochastic sampling and deterministic search to address the discrete and continuous aspects of the tiling problem. Our tiling algorithm made it possible to automatically generate highly-complex animation of multiple interacting characters. We achieved the level of complexity far beyond the current state-of-the-art animation techniques could generate, in terms of the diversity of human behaviors and the spatial/temporal density of interpersonal interactions. PMID:23669532

  14. Tiling motion patches.

    PubMed

    Hyun, Kyunglyul; Kim, Manmyung; Hwang, Youngseok; Lee, Jehee

    2013-11-01

    Simulating multiple character interaction is challenging because character actions must be carefully coordinated to align their spatial locations and synchronized with each other. We present an algorithm to create a dense crowd of virtual characters interacting with each other. The interaction may involve physical contacts, such as hand shaking, hugging, and carrying a heavy object collaboratively. We address the problem by collecting deformable motion patches, each of which describes an episode of multiple interacting characters, and tiling them spatially and temporally. The tiling of motion patches generates a seamless simulation of virtual characters interacting with each other in a nontrivial manner. Our tiling algorithm uses a combination of stochastic sampling and deterministic search to address the discrete and continuous aspects of the tiling problem. Our tiling algorithm made it possible to automatically generate highly complex animation of multiple interacting characters. We achieve the level of interaction complexity far beyond the current state of the art that animation techniques could generate, in terms of the diversity of human behaviors and the spatial/temporal density of interpersonal interactions. PMID:24029911

  15. Seamless tiled display system

    NASA Technical Reports Server (NTRS)

    Dubin, Matthew B. (Inventor); Larson, Brent D. (Inventor); Kolosowsky, Aleksandra (Inventor)

    2006-01-01

    A modular and scalable seamless tiled display apparatus includes multiple display devices, a screen, and multiple lens assemblies. Each display device is subdivided into multiple sections, and each section is configured to display a sectional image. One of the lens assemblies is optically coupled to each of the sections of each of the display devices to project the sectional image displayed on that section onto the screen. The multiple lens assemblies are configured to merge the projected sectional images to form a single tiled image. The projected sectional images may be merged on the screen by magnifying and shifting the images in an appropriate manner. The magnification and shifting of these images eliminates any visual effect on the tiled display that may result from dead-band regions defined between each pair of adjacent sections on each display device, and due to gaps between multiple display devices.

  16. Transcriptional analysis of highly syntenic regions between Medicago truncatula and Glycine max using tiling microarrays

    PubMed Central

    Li, Lei; He, Hang; Zhang, Juan; Wang, Xiangfeng; Bai, Sulan; Stolc, Viktor; Tongprasit, Waraporn; Young, Nevin D; Yu, Oliver; Deng, Xing-Wang

    2008-01-01

    Background Legumes are the third largest family of flowering plants and are unique among crop species in their ability to fix atmospheric nitrogen. As a result of recent genome sequencing efforts, legumes are now one of a few plant families with extensive genomic and transcriptomic data available in multiple species. The unprecedented complexity and impending completeness of these data create opportunities for new approaches to discovery. Results We report here a transcriptional analysis in six different organ types of syntenic regions totaling approximately 1 Mb between the legume plants barrel medic (Medicago truncatula) and soybean (Glycine max) using oligonucleotide tiling microarrays. This analysis detected transcription of over 80% of the predicted genes in both species. We also identified 499 and 660 transcriptionally active regions from barrel medic and soybean, respectively, over half of which locate outside of the predicted exons. We used the tiling array data to detect differential gene expression in the six examined organ types and found several genes that are preferentially expressed in the nodule. Further investigation revealed that some collinear genes exhibit different expression patterns between the two species. Conclusion These results demonstrate the utility of genome tiling microarrays in generating transcriptomic data to complement computational annotation of the newly available legume genome sequences. The tiling microarray data was further used to quantify gene expression levels in multiple organ types of two related legume species. Further development of this method should provide a new approach to comparative genomics aimed at elucidating genome organization and transcriptional regulation. PMID:18348734

  17. Geopolymers as potential repair material in tiles conservation

    NASA Astrophysics Data System (ADS)

    Geraldes, Catarina F. M.; Lima, Augusta M.; Delgado-Rodrigues, José; Mimoso, João Manuel; Pereira, Sílvia R. M.

    2016-03-01

    The restoration materials currently used to fill gaps in historical architectural tiles (e.g. lime or organic resin pastes) usually show serious drawbacks in terms of compatibility, effectiveness or durability. The existing solutions do not fully protect Portuguese faïence tiles ( azulejos) in outdoor conditions and frequently result in further deterioration. Geopolymers can be a potential solution for tile lacunae infill, given the chemical-mineralogical similitude to the ceramic body, and also the durability and versatile range of physical properties that can be obtained through the manipulation of their formulation and curing conditions. This work presents and discusses the viability of the use of geopolymeric pastes to fill lacunae in tiles or to act as "cold" cast ceramic tile surrogates reproducing missing tile fragments. The formulation of geopolymers, namely the type of activators, the alumino-silicate source, the quantity of water required for adequate workability and curing conditions, was studied. The need for post-curing desalination was also considered envisaging their application in the restoration of outdoor historical architectural tiles frequently exposed to adverse environmental conditions. The possible advantages and disadvantages of the use of geopolymers in the conservation of tiles are also discussed. The results obtained reveal that geopolymers pastes are a promising material for the restoration of tiles, when compared to other solutions currently in use.

  18. METHOD FOR EVALUATING MOLD GROWTH ON CEILING TILE

    EPA Science Inventory

    A method to extract mold spores from porous ceiling tiles was developed using a masticator blender. Ceiling tiles were inoculated and analyzed using four species of mold. Statistical analysis comparing results obtained by masticator extraction and the swab method was performed. T...

  19. Molecular random tilings as glasses

    PubMed Central

    Garrahan, Juan P.; Stannard, Andrew; Blunt, Matthew O.; Beton, Peter H.

    2009-01-01

    We have recently shown that p-terphenyl-3,5,3′,5′-tetracarboxylic acid adsorbed on graphite self-assembles into a two-dimensional rhombus random tiling. This tiling is close to ideal, displaying long-range correlations punctuated by sparse localized tiling defects. In this article we explore the analogy between dynamic arrest in this type of random tilings and that of structural glasses. We show that the structural relaxation of these systems is via the propagation–reaction of tiling defects, giving rise to dynamic heterogeneity. We study the scaling properties of the dynamics and discuss connections with kinetically constrained models of glasses. PMID:19720990

  20. Comparing a new laser strainmeter array with an adjacent, parallel running quartz tube strainmeter array

    NASA Astrophysics Data System (ADS)

    Kobe, Martin; Jahr, Thomas; Pöschel, Wolfgang; Kukowski, Nina

    2016-03-01

    In summer 2011, two new laser strainmeters about 26.6 m long were installed in N-S and E-W directions parallel to an existing quartz tube strainmeter system at the Geodynamic Observatory Moxa, Thuringia/Germany. This kind of installation is unique in the world and allows the direct comparison of measurements of horizontal length changes with different types of strainmeters for the first time. For the comparison of both data sets, we used the tidal analysis over three years, the strain signals resulting from drilling a shallow 100 m deep borehole on the ground of the observatory and long-period signals. The tidal strain amplitude factors of the laser strainmeters are found to be much closer to theoretical values (85%-105% N-S and 56%-92% E-W) than those of the quartz tube strainmeters. A first data analysis shows that the new laser strainmeters are more sensitive in the short-periodic range with an improved signal-to-noise ratio and distinctly more stable during long-term drifts of environmental parameters such as air pressure or groundwater level. We compared the signal amplitudes of both strainmeter systems at variable signal periods and found frequency-dependent amplitude differences. Confirmed by the tidal parameters, we have now a stable and high resolution laser strainmeter system that serves as calibration reference for quartz tube strainmeters.

  1. Comparing a new laser strainmeter array with an adjacent, parallel running quartz tube strainmeter array.

    PubMed

    Kobe, Martin; Jahr, Thomas; Pöschel, Wolfgang; Kukowski, Nina

    2016-03-01

    In summer 2011, two new laser strainmeters about 26.6 m long were installed in N-S and E-W directions parallel to an existing quartz tube strainmeter system at the Geodynamic Observatory Moxa, Thuringia/Germany. This kind of installation is unique in the world and allows the direct comparison of measurements of horizontal length changes with different types of strainmeters for the first time. For the comparison of both data sets, we used the tidal analysis over three years, the strain signals resulting from drilling a shallow 100 m deep borehole on the ground of the observatory and long-period signals. The tidal strain amplitude factors of the laser strainmeters are found to be much closer to theoretical values (85%-105% N-S and 56%-92% E-W) than those of the quartz tube strainmeters. A first data analysis shows that the new laser strainmeters are more sensitive in the short-periodic range with an improved signal-to-noise ratio and distinctly more stable during long-term drifts of environmental parameters such as air pressure or groundwater level. We compared the signal amplitudes of both strainmeter systems at variable signal periods and found frequency-dependent amplitude differences. Confirmed by the tidal parameters, we have now a stable and high resolution laser strainmeter system that serves as calibration reference for quartz tube strainmeters. PMID:27036794

  2. Tiling strategies for optical follow-up of gravitational-wave triggers by telescopes with a wide field of view

    NASA Astrophysics Data System (ADS)

    Ghosh, Shaon; Bloemen, Steven; Nelemans, Gijs; Groot, Paul J.; Price, Larry R.

    2016-08-01

    Aims: Binary neutron stars are among the most promising candidates for joint gravitational-wave and electromagnetic astronomy. The goal of this work is to investigate various observing strategies that telescopes with wide field of view might incorporate while searching for electromagnetic counterparts of gravitational-wave triggers. Methods: We examined various strategies of scanning the gravitational-wave sky localizations on the mock 2015-16 gravitational-wave events. First, we studied the performance of the sky coverage using a naive tiling system that completely covers a given confidence interval contour using a fixed grid. Then we propose the ranked-tiling strategy where we sample the localization in discrete two-dimensional intervals that are equivalent to the telescope's field of view and rank them based on their sample localizations. We then introduce an optimization of the grid by iterative sliding of the tiles. Next, we conducted tests for all the methods on a large sample of sky localizations that are expected in the first two years of operation of the Laser interferometer Gravitational-wave Observatory (LIGO) and Virgo detectors. We investigated the performance of the ranked-tiling strategy for telescope arrays and compared their performance against monolithic telescopes with a giant field of view. Finally, we studied the ability of optical counterpart detection by various types of telescopes. Results: Our analysis reveals that the ranked-tiling strategy improves the localization coverage over the contour-covering method. The improvement is more significant for telescopes with larger fields of view. We also find that while optimizing the position of the tiles significantly improves the coverage compared to contour-covering tiles. For ranked-tiles the same procedure leads to negligible improvement in the coverage of the sky localizations. We observed that distributing the field of view of the telescopes into arrays of multiple telescopes significantly

  3. Quasiperiodic tilings generated by matrices

    NASA Astrophysics Data System (ADS)

    Rao, Nagaraja S.; Suryanarayan, E. R.

    1994-02-01

    Using the inflation method, Watanabe, Ito and Soma [3], Clark and Suryanarayan [4] and Balagurusamy, Ramesh and Gopal [5] have obtained nonperiodic tilings of the plane with n-fold rotational symmetry, n = 2, 3, 4, 5, 8, using two unit prototiles. Fortunately, there is an easier way to generate a more general class of nonperiodic tilings which contains the above-mentioned tilings as special cases. We do this by specifying two matrices of order two which define the two classes of tilings; thus, our approach uses the basic techniques from linear algebra in the study of quasiperiodic tilings and the method can be generalized to obtain tilings that have more than two prototiles. The tilings generated are fractals and their dimensions and the rate of growth are determined.

  4. Application of Array-Based Comparative Genomic Hybridization to Pediatric Neurologic Diseases

    PubMed Central

    Byeon, Jung Hye; Shin, Eunsim; Kim, Gun-Ha; Lee, Kyungok; Hong, Young Sook; Lee, Joo Won

    2014-01-01

    Purpose Array comparative genomic hybridization (array-CGH) is a technique used to analyze quantitative increase or decrease of chromosomes by competitive DNA hybridization of patients and controls. This study aimed to evaluate the benefits and yield of array-CGH in comparison with conventional karyotyping in pediatric neurology patients. Materials and Methods We included 87 patients from the pediatric neurology clinic with at least one of the following features: developmental delay, mental retardation, dysmorphic face, or epilepsy. DNA extracted from patients and controls was hybridized on the Roche NimbleGen 135K oligonucleotide array and compared with G-band karyotyping. The results were analyzed with findings reported in recent publications and internet databases. Results Chromosome imbalances, including 9 cases detected also by G-band karyotyping, were found in 28 patients (32.2%), and at least 19 of them seemed to be causally related to the abnormal phenotypes. Regarding each clinical symptom, 26.2% of 42 developmental delay patients, 44.4% of 18 mental retardation patients, 42.9% of 28 dysmorphic face patients, and 34.6% of 26 epilepsy patients showed abnormal array results. Conclusion Although there were relatively small number of tests in patients with pediatric neurologic disease, this study demonstrated that array-CGH is a very useful tool for clinical diagnosis of unknown genome abnormalities performed in pediatric neurology clinics. PMID:24339284

  5. Tandem gene arrays in Trypanosoma brucei: Comparative phylogenomic analysis of duplicate sequence variation

    PubMed Central

    Jackson, Andrew P

    2007-01-01

    Background The genome sequence of the protistan parasite Trypanosoma brucei contains many tandem gene arrays. Gene duplicates are created through tandem duplication and are expressed through polycistronic transcription, suggesting that the primary purpose of long, tandem arrays is to increase gene dosage in an environment where individual gene promoters are absent. This report presents the first account of the tandem gene arrays in the T. brucei genome, employing several related genome sequences to establish how variation is created and removed. Results A systematic survey of tandem gene arrays showed that substantial sequence variation existed across the genome; variation from different regions of an array often produced inconsistent phylogenetic affinities. Phylogenetic relationships of gene duplicates were consistent with concerted evolution being a widespread homogenising force. However, tandem duplicates were not usually identical; therefore, any homogenising effect was coincident with divergence among duplicates. Allelic gene conversion was detected using various criteria and was apparently able to both remove and introduce sequence variation. Tandem arrays containing structural heterogeneity demonstrated how sequence homogenisation and differentiation can occur within a single locus. Conclusion The use of multiple genome sequences in a comparative analysis of tandem gene arrays identified substantial sequence variation among gene duplicates. The distribution of sequence variation is determined by a dynamic balance of conservative and innovative evolutionary forces. Gene trees from various species showed that intraspecific duplicates evolve in concert, perhaps through frequent gene conversion, although this does not prevent sequence divergence, especially where structural heterogeneity physically separates a duplicate from its neighbours. In describing dynamics of sequence variation that have consequences beyond gene dosage, this survey provides a basis for

  6. Producing superhydrophobic roof tiles

    NASA Astrophysics Data System (ADS)

    Carrascosa, Luis A. M.; Facio, Dario S.; Mosquera, Maria J.

    2016-03-01

    Superhydrophobic materials can find promising applications in the field of building. However, their application has been very limited because the synthesis routes involve tedious processes, preventing large-scale application. A second drawback is related to their short-term life under outdoor conditions. A simple and low-cost synthesis route for producing superhydrophobic surfaces on building materials is developed and their effectiveness and their durability on clay roof tiles are evaluated. Specifically, an organic-inorganic hybrid gel containing silica nanoparticles is produced. The nanoparticles create a densely packed coating on the roof tile surface in which air is trapped. This roughness produces a Cassie-Baxter regime, promoting superhydrophobicity. A surfactant, n-octylamine, was also added to the starting sol to catalyze the sol-gel process and to coarsen the pore structure of the gel network, preventing cracking. The application of ultrasound obviates the need to use volatile organic compounds in the synthesis, thereby making a ‘green’ product. It was also demonstrated that a co-condensation process effective between the organic and inorganic species is crucial to obtain durable and effective coatings. After an aging test, high hydrophobicity was maintained and water absorption was completely prevented for the roof tile samples under study. However, a transition from a Cassie-Baxter to a Wenzel state regime was observed as a consequence of the increase in the distance between the roughness pitches produced by the aging of the coating.

  7. Producing superhydrophobic roof tiles.

    PubMed

    Carrascosa, Luis A M; Facio, Dario S; Mosquera, Maria J

    2016-03-01

    Superhydrophobic materials can find promising applications in the field of building. However, their application has been very limited because the synthesis routes involve tedious processes, preventing large-scale application. A second drawback is related to their short-term life under outdoor conditions. A simple and low-cost synthesis route for producing superhydrophobic surfaces on building materials is developed and their effectiveness and their durability on clay roof tiles are evaluated. Specifically, an organic-inorganic hybrid gel containing silica nanoparticles is produced. The nanoparticles create a densely packed coating on the roof tile surface in which air is trapped. This roughness produces a Cassie-Baxter regime, promoting superhydrophobicity. A surfactant, n-octylamine, was also added to the starting sol to catalyze the sol-gel process and to coarsen the pore structure of the gel network, preventing cracking. The application of ultrasound obviates the need to use volatile organic compounds in the synthesis, thereby making a 'green' product. It was also demonstrated that a co-condensation process effective between the organic and inorganic species is crucial to obtain durable and effective coatings. After an aging test, high hydrophobicity was maintained and water absorption was completely prevented for the roof tile samples under study. However, a transition from a Cassie-Baxter to a Wenzel state regime was observed as a consequence of the increase in the distance between the roughness pitches produced by the aging of the coating. PMID:26854839

  8. Steep-Slope Assembly Testing of Clay and Concrete Tile With and Without Cool Pigmented Colors

    SciTech Connect

    Miller, William A

    2005-11-01

    Cool color pigments and sub-tile venting of clay and concrete tile roofs significantly impact the heat flow crossing the roof deck of a steep-slope roof. Field measures for the tile roofs revealed a 70% drop in the peak heat flow crossing the deck as compared to a direct-nailed asphalt shingle roof. The Tile Roofing Institute (TRI) and its affiliate members are keenly interested in documenting the magnitude of the drop for obtaining solar reflectance credits with state and federal "cool roof" building efficiency standards. Tile roofs are direct-nailed or are attached to a deck with batten or batten and counter-batten construction. S-Misson clay and concrete tile roofs, a medium-profile concrete tile roof, and a flat slate tile roof were installed on fully nstrumented attic test assemblies. Temperature measures of the roof, deck, attic, and ceiling, heat flows, solar reflectance, thermal emittance, and the ambient weather were recorded for each of the tile roofs and also on an adjacent attic cavity covered with a conventional pigmented and directnailed asphalt shingle roof. ORNL measured the tile's underside temperature and the bulk air temperature and heat flows just underneath the tile for batten and counter-batten tile systems and compared the results to the conventional asphalt shingle.

  9. Ceramic tile expansion engine housing

    DOEpatents

    Myers, B.

    1995-04-11

    An expandable ceramic tile housing for a high temperature engine is disclosed wherein each tile is independently supported in place in an interlocking matrix by retention mechanisms which mechanically couple the individual ceramic tiles to an outer metal support housing while maintaining thermal isolation of the metal housing from the ceramic tiles. The ceramic tiles are formed with either an octagonal front face portion and a square shank portion or a square front face portion with an octagonal shank portion. The length of the sides of the octagonal front face portion on one tile is equal to the length of the sides of the square front face portion of adjoining tiles to permit formation of an interlocking matrix. Fibrous ceramic sealing material may be placed between radial and tangential facing surfaces of adjacent tiles to limit radial gas flow there between. Labyrinth-sealed pressure-controlled compartments may be established between the tile housing and the outer metal support housing to control radial gas flow. 8 figures.

  10. Ceramic tile expansion engine housing

    DOEpatents

    Myers, Blake

    1995-01-01

    An expandable ceramic tile housing for a high temperature engine is disclosed wherein each tile is independently supported in place in an interlocking matrix by retention mechanisms which mechanically couple the individual ceramic tiles to an outer metal support housing while maintaining thermal isolation of the metal housing from the ceramic tiles. The ceramic tiles are formed with either an octagonal front face portion and a square shank portion or a square front face portion with an octagonal shank portion. The length of the sides of the octagonal front face portion on one tile is equal to the length of the sides of the square front face portion of adjoining tiles to permit formation of an interlocking matrix. Fibrous ceramic sealing material may be placed between radial and tangential facing surfaces of adjacent tiles to limit radial gas flow therebetween. Labyrinth-sealed pressure-controlled compartments may be established between the tile housing and the outer metal support housing to control radial gas flow.

  11. Direct readout of gaseous detectors with tiled CMOS circuits

    NASA Astrophysics Data System (ADS)

    Visschers, J. L.; Blanco Carballo, V.; Chefdeville, M.; Colas, P.; van der Graaf, H.; Schmitz, J.; Smits, S.; Timmermans, J.

    2007-03-01

    A coordinated design effort is underway, exploring the three-dimensional direct readout of gaseous detectors by an anode plate equipped with a tiled array of many CMOS pixel readout ASICs, having amplification grids integrated on their topsides and being contacted on their backside.

  12. Substructure procedure for including tile flexibility in stress analysis of shuttle thermal protection system

    NASA Technical Reports Server (NTRS)

    Giles, G. L.

    1980-01-01

    A substructure procedure to include the flexibility of the tile in the stress analysis of the shuttle thermal protection system (TPS) is described. In this procedure, the TPS is divided into substructures of (1) the tile which is modeled by linear finite elements and (2) the SIP which is modeled as a nonlinear continuum. This procedure was applied for loading cases of uniform pressure, uniform moment, and an aerodynamic shock on various tile thicknesses. The ratios of through-the-thickness stresses in the SIP which were calculated using a flexible tile compared to using a rigid tile were found to be less than 1.05 for the cases considered.

  13. Covering the Plane with Rep-Tiles.

    ERIC Educational Resources Information Center

    Fosnaugh, Linda S.; Harrell, Marvin E.

    1996-01-01

    Presents an activity in which students use geometric figures, rep-tiles, to design a tile floor. Rep-tiles are geometric figures of which copies can fit together to form a larger similar figure. Includes reproducible student worksheet. (MKR)

  14. Analytical solutions for two-dimensional groundwater flow with subsurface drainage tiles

    NASA Astrophysics Data System (ADS)

    Liang, Xiuyu; Zhang, You-Kuan; Schilling, Keith E.

    2015-02-01

    The tile drainage problem in an unconfined aquifer was investigated. A mathematical model was established that describes two-dimensional groundwater flow in an unconfined aquifer near a river with a linearized Boussinesq equation, time-dependent sources and a sloped tile. Analytical solutions for groundwater level and discharge were derived and used to compare hydrologic conditions in a system with and without tile (natural drainage). We found that the spatial and temporal variations of groundwater level and discharge were significantly altered by the presence of drainage tile. In an aquifer with tile drainage, the groundwater level was lower and total groundwater discharge to the river increased compared to an aquifer with no tile. Application of the solutions to a synthetic case demonstrates that the analytical solutions derived can be used to quantify effect of tiles on nitrate loads in the baseflow of a river and assess the effectiveness of various conservation practices.

  15. Tiles for Reo

    NASA Astrophysics Data System (ADS)

    Arbab, Farhad; Bruni, Roberto; Clarke, Dave; Lanese, Ivan; Montanari, Ugo

    Reo is an exogenous coordination model for software components. The informal semantics of Reo has been matched by several proposals of formalization, exploiting co-algebraic techniques, constraint-automata, and coloring tables. We aim to show that the Tile Model offers a flexible and adequate semantic setting for Reo, such that: (i) it is able to capture context-aware behavior; (ii) it is equipped with a natural notion of behavioral equivalence which is compositional; (iii) it offers a uniform setting for representing not only the ordinary execution of Reo systems but also dynamic reconfiguration strategies.

  16. Application of Array Comparative Genomic Hybridization in Newborns with Multiple Congenital Anomalies.

    PubMed

    Szczałuba, Krzysztof; Nowakowska, Beata; Sobecka, Katarzyna; Smyk, Marta; Castaneda, Jennifer; Klapecki, Jakub; Kutkowska-Kaźmierczak, Anna; Śmigiel, Robert; Bocian, Ewa; Radkowski, Marek; Demkow, Urszula

    2016-01-01

    Major congenital anomalies are detectable in 2-3 % of the newborn population. Some of their genetic causes are attributable to copy number variations identified by array comparative genomic hybridization (aCGH). The value of aCGH screening as a first-tier test in children with multiple congenital anomalies has been studied and consensus adopted. However, array resolution has not been agreed upon, specifically in the newborn or infant population. Moreover, most array studies have been focused on mixed populations of intellectual disability/developmental delay with or without multiple congenital anomalies, making it difficult to assess the value of microarrays in newborns. The aim of the study was to determine the optimal quality and clinical sensitivity of high-resolution array comparative genomic hybridization in neonates with multiple congenital anomalies. We investigated a group of 54 newborns with multiple congenital anomalies defined as two or more birth defects from more than one organ system. Cytogenetic studies were performed using OGT CytoSure 8 × 60 K microarray. We found ten rearrangements in ten newborns. Of these, one recurrent syndromic microduplication was observed, whereas all other changes were unique. Six rearrangements were definitely pathogenic, including one submicroscopic and five that could be seen on routine karyotype analysis. Four other copy number variants were likely pathogenic. The candidate genes that may explain the phenotype were discussed. In conclusion, high-resolution array comparative hybridization can be applied successfully in newborns with multiple congenital anomalies as the method detects a significant number of pathogenic changes, resulting in early diagnoses. We hypothesize that small changes previously considered benign or even inherited rearrangements should be classified as potentially pathogenic at least until a subsequent clinical assessment would exclude a developmental delay or dysmorphism. PMID:26987320

  17. Kinetics of DNA tile dimerization.

    PubMed

    Jiang, Shuoxing; Yan, Hao; Liu, Yan

    2014-06-24

    Investigating how individual molecular components interact with one another within DNA nanoarchitectures, both in terms of their spatial and temporal interactions, is fundamentally important for a better understanding of their physical behaviors. This will provide researchers with valuable insight for designing more complex higher-order structures that can be assembled more efficiently. In this report, we examined several spatial factors that affect the kinetics of bivalent, double-helical (DH) tile dimerization, including the orientation and number of sticky ends (SEs), the flexibility of the double helical domains, and the size of the tiles. The rate constants we obtained confirm our hypothesis that increased nucleation opportunities and well-aligned SEs accelerate tile-tile dimerization. Increased flexibility in the tiles causes slower dimerization rates, an effect that can be reversed by introducing restrictions to the tile flexibility. The higher dimerization rates of more rigid tiles results from the opposing effects of higher activation energies and higher pre-exponential factors from the Arrhenius equation, where the pre-exponential factor dominates. We believe that the results presented here will assist in improved implementation of DNA tile based algorithmic self-assembly, DNA based molecular robotics, and other specific nucleic acid systems, and will provide guidance to design and assembly processes to improve overall yield and efficiency. PMID:24794259

  18. Spectral response data for development of cool coloured tile coverings

    NASA Astrophysics Data System (ADS)

    Libbra, Antonio; Tarozzi, Luca; Muscio, Alberto; Corticelli, Mauro A.

    2011-03-01

    Most ancient or traditional buildings in Italy show steep-slope roofs covered by red clay tiles. As the rooms immediately below the roof are often inhabited in historical or densely urbanized centres, the combination of low solar reflectance of tile coverings and low thermal inertia of either wooden roof structures or sub-tile insulation panels makes summer overheating a major problem. The problem can be mitigated by using tiles coated with cool colours, that is colours with the same spectral response of clay tiles in the visible, but highly reflecting in the near infrared range, which includes more than half of solar radiation. Cool colours can yield the same visible aspect of common building surfaces, but higher solar reflectance. Studies aimed at developing cool colour tile coverings for traditional Italian buildings have been started. A few coating solutions with the typical red terracotta colour have been produced and tested in the laboratory, using easily available materials. The spectral response and the solar reflectance have been measured and compared with that of standard tiles.

  19. Oligonucleotide arrays vs. metaphase-comparative genomic hybridisation and BAC arrays for single-cell analysis: first applications to preimplantation genetic diagnosis for Robertsonian translocation carriers.

    PubMed

    Ramos, Laia; del Rey, Javier; Daina, Gemma; García-Aragonés, Manel; Armengol, Lluís; Fernandez-Encinas, Alba; Parriego, Mònica; Boada, Montserrat; Martinez-Passarell, Olga; Martorell, Maria Rosa; Casagran, Oriol; Benet, Jordi; Navarro, Joaquima

    2014-01-01

    Comprehensive chromosome analysis techniques such as metaphase-Comparative Genomic Hybridisation (CGH) and array-CGH are available for single-cell analysis. However, while metaphase-CGH and BAC array-CGH have been widely used for Preimplantation Genetic Diagnosis, oligonucleotide array-CGH has not been used in an extensive way. A comparison between oligonucleotide array-CGH and metaphase-CGH has been performed analysing 15 single fibroblasts from aneuploid cell-lines and 18 single blastomeres from human cleavage-stage embryos. Afterwards, oligonucleotide array-CGH and BAC array-CGH were also compared analysing 16 single blastomeres from human cleavage-stage embryos. All three comprehensive analysis techniques provided broadly similar cytogenetic profiles; however, non-identical profiles appeared when extensive aneuploidies were present in a cell. Both array techniques provided an optimised analysis procedure and a higher resolution than metaphase-CGH. Moreover, oligonucleotide array-CGH was able to define extra segmental imbalances in 14.7% of the blastomeres and it better determined the specific unbalanced chromosome regions due to a higher resolution of the technique (≈ 20 kb). Applicability of oligonucleotide array-CGH for Preimplantation Genetic Diagnosis has been demonstrated in two cases of Robertsonian translocation carriers 45,XY,der(13;14)(q10;q10). Transfer of euploid embryos was performed in both cases and pregnancy was achieved by one of the couples. This is the first time that an oligonucleotide array-CGH approach has been successfully applied to Preimplantation Genetic Diagnosis for balanced chromosome rearrangement carriers. PMID:25415307

  20. Oligonucleotide Arrays vs. Metaphase-Comparative Genomic Hybridisation and BAC Arrays for Single-Cell Analysis: First Applications to Preimplantation Genetic Diagnosis for Robertsonian Translocation Carriers

    PubMed Central

    Ramos, Laia; del Rey, Javier; Daina, Gemma; García-Aragonés, Manel; Armengol, Lluís; Fernandez-Encinas, Alba; Parriego, Mònica; Boada, Montserrat; Martinez-Passarell, Olga; Martorell, Maria Rosa; Casagran, Oriol; Benet, Jordi; Navarro, Joaquima

    2014-01-01

    Comprehensive chromosome analysis techniques such as metaphase-Comparative Genomic Hybridisation (CGH) and array-CGH are available for single-cell analysis. However, while metaphase-CGH and BAC array-CGH have been widely used for Preimplantation Genetic Diagnosis, oligonucleotide array-CGH has not been used in an extensive way. A comparison between oligonucleotide array-CGH and metaphase-CGH has been performed analysing 15 single fibroblasts from aneuploid cell-lines and 18 single blastomeres from human cleavage-stage embryos. Afterwards, oligonucleotide array-CGH and BAC array-CGH were also compared analysing 16 single blastomeres from human cleavage-stage embryos. All three comprehensive analysis techniques provided broadly similar cytogenetic profiles; however, non-identical profiles appeared when extensive aneuploidies were present in a cell. Both array techniques provided an optimised analysis procedure and a higher resolution than metaphase-CGH. Moreover, oligonucleotide array-CGH was able to define extra segmental imbalances in 14.7% of the blastomeres and it better determined the specific unbalanced chromosome regions due to a higher resolution of the technique (≈20 kb). Applicability of oligonucleotide array-CGH for Preimplantation Genetic Diagnosis has been demonstrated in two cases of Robertsonian translocation carriers 45,XY,der(13;14)(q10;q10). Transfer of euploid embryos was performed in both cases and pregnancy was achieved by one of the couples. This is the first time that an oligonucleotide array-CGH approach has been successfully applied to Preimplantation Genetic Diagnosis for balanced chromosome rearrangement carriers. PMID:25415307

  1. Repairing high-temperature glazed tiles

    NASA Technical Reports Server (NTRS)

    Ecord, G. M.; Schomburg, C.

    1981-01-01

    Tetraethyl orthosilicate (TEOS) mixture fills chips and cracks in glazed tile surface. Filler is made by mixing hydrolyzed TEOS, silicon tetraboride powder, and pulverized tile material. Repaired tiles survived testing by intense acoustic emissions, arc jets, and intense heat radiation. Repair is reliable and rapid, performed in 1-1 1/2 hours with tile in any or orientation.

  2. Foam on Tile Impact Modeling for the STS-107 Investigation

    NASA Technical Reports Server (NTRS)

    Stellingwerf, R. F.; Robinson, J. H.; Richardson, S.; Evans, S. W.; Stallworth, R.; Hovater, M.

    2004-01-01

    Following the breakup of the Space Shuttle Columbia during reentry a NASA/Contractor investigation team was formed to examine the probable damage inflicted on Orbiter Thermal Protection System elements by impact of External Tank insulating foam projectiles. The authors formed a working subgroup within the larger team to apply the Smooth Particle Hydrodynamics code SPHC to the damage estimation problem. Numerical models of the Orbiter's tiles and of the Tank's foam were constructed and used as inputs into the code. Material properties needed to properly model the tiles and foam were obtained from other working subgroups who performed tests on these items for this purpose. Two- and three-dimensional models of the tiles were constructed, including the glass outer layer, the main body of LI-900 insulation, the densified lower layer of LI-900, the Nomex felt mounting layer, and the Aluminum 2024 vehicle skin. A model for the BX-250 foam including porous compression, elastic rebound, and surface erosion was developed. Code results for the tile damage and foam behavior were extensively validated through comparison with Southwest Research Institute foam-on-tile impact experiments carried out in 1999. These tests involved small projectiles striking individual tiles and small tile arrays. Following code and model validation we simulated impacts of larger foam projectiles on the examples of tile systems used on the Orbiter. Results for impacts on the main landing gear door are presented in this paper, including effects of impacts at several angles, and of rapidly rotating projectiles. General results suggest that foam impacts on tiles at about 500 mph could cause appreciable damage if the impact angle is greater than about 20 degrees. Some variations of the foam properties, such as increased brittleness or increased density could increase damage in some cases. Rotation up to 17 rps failed to increase the damage for the two cases considered. This does not rule out other cases

  3. Theoretical and experimental comparative analysis of beamforming methods for loudspeaker arrays under given performance constraints

    NASA Astrophysics Data System (ADS)

    Olivieri, Ferdinando; Fazi, Filippo Maria; Nelson, Philip A.; Shin, Mincheol; Fontana, Simone; Yue, Lang

    2016-07-01

    Methods for beamforming are available that provide the signals used to drive an array of sources for the implementation of systems for the so-called personal audio. In this work, performance of the delay-and-sum (DAS) method and of three widely used methods for optimal beamforming are compared by means of computer simulations and experiments in an anechoic environment using a linear array of sources with given constraints on quality of the reproduced field at the listener's position and limit to input energy to the array. Using the DAS method as a benchmark for performance, the frequency domain responses of the loudspeaker filters can be characterized in three regions. In the first region, at low frequencies, input signals designed with the optimal methods are identical and provide higher directivity performance than that of the DAS. In the second region, performance of the optimal methods are similar to the DAS method. The third region starts above the limit due to spatial aliasing. A method is presented to estimate the boundaries of these regions.

  4. Comparing Coordinated Garbage Collection Algorithms for Arrays of Solid-state Drives

    SciTech Connect

    Lee, Junghee; Kim, Youngjae; Oral, H Sarp; Shipman, Galen M; Dillow, David A; Wang, Feiyi

    2012-01-01

    Solid-State Drives (SSDs) offer significant performance improvements over hard disk drives (HDD) on a number of workloads. The frequency of garbage collection (GC) activity is directly correlated with the pattern, frequency, and volume of write requests, and scheduling of GC is controlled by logic internal to the SSD. SSDs can exhibit significant performance degradations when garbage collection (GC) conflicts with an ongoing I/O request stream. When using SSDs in a RAID array, the lack of coordination of the local GC processes amplifies these performance degradations. No RAID controller or SSD available today has the technology to overcome this limitation. In our previous work, we presented a Global Garbage Collection (GGC) mechanism to improve response times and reduce performance variability for a RAID array of SSDs. A coordination method is employed so that GCs in the array can run at the same time. The coordination can exhibit substantial performance improvement. In this paper, we explore various GC coordination algorithms. We develop reactive and proactive GC coordination algorithms and evaluate their I/O performance and block erase counts for various workloads. We show that a proactive GC coordination algorithm can improve the I/O response times by up to 9% further and increase the lifetime of SSDs by reducing the number of block erase counts by up to 79% compared to a reactive algorithm.

  5. Lozenge Tilings and Hurwitz Numbers

    NASA Astrophysics Data System (ADS)

    Novak, Jonathan

    2015-10-01

    We give a new proof of the fact that, near a turning point of the frozen boundary, the vertical tiles in a uniformly random lozenge tiling of a large sawtooth domain are distributed like the eigenvalues of a GUE random matrix. Our argument uses none of the standard tools of integrable probability. In their place, it uses a combinatorial interpretation of the Harish-Chandra/Itzykson-Zuber integral as a generating function for desymmetrized Hurwitz numbers.

  6. Hetero-oligonucleotide nanoscale tiles capable of two-dimensional lattice formation as testbeds for a rapid, affordable purification methodology.

    PubMed

    Lukeman, Philip S

    2013-06-21

    New nanoscale hetero-oligonucleotide tiles are assembled from DNA, RNA and morpholino oligos and purified using size exclusion filtration. Homo-oligonucleotide tiles assembled from RP-cartridge processed DNA oligos are purified by nondenaturing gel electrophoresis. These tiles' purity and homogeneity are demonstrated by gel electrophoresis and their incorporation into two-dimensional arrays visualized by AFM. This purification methodology increases throughput and decreases costs for researchers who wish to screen multiple tiles for utilization in structural or analytical studies. PMID:23676891

  7. Radiation hardness of 3HF-tile/O2-WLS-fiber calorimeter

    SciTech Connect

    Han, S.W.; Hu, L.D.; Liu, N.Z.

    1993-11-01

    The radiation hardness of a 3HF-tile/O2-WLS-fiber calorimeter with two different tile/fiber patterns has been studied. Two calorimeter modules were irradiated up to 10 Mrad with the BEPC 1.3 GeV electron beam. The radiation damage of these modules is compared with our previous measurements from SCSN81-tile/BCF91A-WLS-fiber modules. The longitudinal damage profiles are fitted as a function of depth.

  8. Study of tile/fiber systems manufactured from Kharkov injection molded and Kuraray SCSN-81 scintillators

    NASA Astrophysics Data System (ADS)

    Nemashkalo, A.; Popov, V.; Rubashkin, A.; Sorokin, P.; Zatserklianiy, A.; Borisenko, A.; Senchishin, V.; Skrebtsov, O.; Bolotov, V.

    1998-12-01

    We present the measurements of light output, light yield uniformity, and recovery after radiation damage of the tile/fiber systems made from the Kharkov injection molded and Kuraray SCSN-81 scintillators. The tiles were trapezoidal in shape, 131×90×122 mm3, with a Kuraray Y11 multiclad WLS read-out. The results are compared with those obtained using the tile/fiber systems manufactured from the Kuraray SCSN-81 scintillator and tested under the same conditions.

  9. Optimization of the light yield properties from scintillator tiles read out directly by silicon photomultipliers

    NASA Astrophysics Data System (ADS)

    Bobchenko, B.; Chadeeva, M.; Danilov, M.; Mironov, D.; Rusinov, V.; Tarkovskiy, E.

    2016-02-01

    The research of the light yield from the scintillator tiles with direct readout by silicon photomultipliers (SiPM) has been performed. The tile size is 30 x 30 x 3 mm3 as planned for the AHCAL of the ILD at the ILC. The different tile geometries were studied. The uniformity of light yield has been optimized and one geometry has been selected. The results are compared to the studies on the same topic, performed by another groups.

  10. Embryo selection in IVF: is polar body array comparative genomic hybridization accurate enough?

    PubMed

    Scriven, Paul N; Ogilvie, Caroline Mackie; Khalaf, Yacoub

    2012-04-01

    The emergence of the array comparative genomic hybridization technique (aCGH) is considered an advance in preimplantation genetic testing. Analysis of the recently published pilot study using polar body aCGH indicates that the test accuracy compares favourably with the fluorescence in situ hybridization technique although a substantial number of euploid zygotes are still likely to be excluded incorrectly. A sound argument against selection in principle has recently been published, based on accumulating evidence that potentially all embryos can now be cryopreserved and transferred in subsequent frozen replacement cycles without impairing pregnancy rates. We suggest that vitrification and serial transfer without testing are likely to give patients the best chance for a successful pregnancy, and avoid the use of an expensive technology. PMID:22328558

  11. Detection limit of intragenic deletions with targeted array comparative genomic hybridization

    PubMed Central

    2013-01-01

    Background Pathogenic mutations range from single nucleotide changes to deletions or duplications that encompass a single exon to several genes. The use of gene-centric high-density array comparative genomic hybridization (aCGH) has revolutionized the detection of intragenic copy number variations. We implemented an exon-centric design of high-resolution aCGH to detect single- and multi-exon deletions and duplications in a large set of genes using the OGT 60 K and 180 K arrays. Here we describe the molecular characterization and breakpoint mapping of deletions at the smaller end of the detectable range in several genes using aCGH. Results The method initially implemented to detect single to multiple exon deletions, was able to detect deletions much smaller than anticipated. The selected deletions we describe vary in size, ranging from over 2 kb to as small as 12 base pairs. The smallest of these deletions are only detectable after careful manual review during data analysis. Suspected deletions smaller than the detection size for which the method was optimized, were rigorously followed up and confirmed with PCR-based investigations to uncover the true detection size limit of intragenic deletions with this technology. False-positive deletion calls often demonstrated single nucleotide changes or an insertion causing lower hybridization of probes demonstrating the sensitivity of aCGH. Conclusions With optimizing aCGH design and careful review process, aCGH can uncover intragenic deletions as small as dozen bases. These data provide insight that will help optimize probe coverage in array design and illustrate the true assay sensitivity. Mapping of the breakpoints confirms smaller deletions and contributes to the understanding of the mechanism behind these events. Our knowledge of the mutation spectra of several genes can be expected to change as previously unrecognized intragenic deletions are uncovered. PMID:24304607

  12. Modal analysis and dynamic stresses for acoustically excited Shuttle insulation tiles

    NASA Technical Reports Server (NTRS)

    Ojalvo, I. U.; Ogilvie, P. I.

    1976-01-01

    The thermal protection system of the Space Shuttle consists of thousands of separate insulation tiles, of varying thicknesses, bonded to the orbiter's surface through a soft strain-isolation pad which is bonded, in turn, to the vehicle's stiffened metallic skin. A modal procedure for obtaining the acoustically induced RMS stress in these comparatively thick tiles is described. The modes employed are generated by a previously developed iterative procedure which converges rapidly for the combined system of tiles and primary structure considered. Each tile is idealized by several hundred three-dimensional finite elements and all tiles on a given panel interact dynamically. Acoustic response results from the present analyses are presented. Comparisons with other analytical results and measured modal data for a typical Shuttle panel, both with and without tiles, are made, and the agreement is good.

  13. Towards a DNA Nanoprocessor: Reusable Tile-Integrated DNA Circuits.

    PubMed

    Gerasimova, Yulia V; Kolpashchikov, Dmitry M

    2016-08-22

    Modern electronic microprocessors use semiconductor logic gates organized on a silicon chip to enable efficient inter-gate communication. Here, arrays of communicating DNA logic gates integrated on a single DNA tile were designed and used to process nucleic acid inputs in a reusable format. Our results lay the foundation for the development of a DNA nanoprocessor, a small and biocompatible device capable of performing complex analyses of DNA and RNA inputs. PMID:27430161

  14. Statistical magnetometry on isolated NiCo nanowires and nanowire arrays: a comparative study

    NASA Astrophysics Data System (ADS)

    Sergelius, Philip; Garcia Fernandez, Javier; Martens, Stefan; Zocher, Michael; Böhnert, Tim; Vega Martinez, Victor; de la Prida, Victor Manuel; Görlitz, Detlef; Nielsch, Kornelius

    2016-04-01

    The first-order reversal curve (FORC) method can be used to extract information about the interaction and switching field distribution of ferromagnetic nanowire arrays, yet it remains challenging to acquire reliable values. Within ordered pores of anodic alumina templates we electrochemically synthesize eight different Ni x Co1-x samples with x varying between 0.05 and 1. FORC diagrams are acquired using vibrating sample magnetometry. By dissolving the template and using the magneto-optical Kerr effect, we measure the hysteresis loops of up to 100 different and isolated nanowires for each sample to gain precise information about the intrinsic switching field distribution. Values of the interaction field are extracted from a deshearing of the major hysteresis loop. We present a comparative study between all methods in order to evaluate and reinforce current FORC theory with experimental findings.

  15. Speckle-based modulation transfer function measurements for comparative evaluation of CCD and CMOS detector arrays

    NASA Astrophysics Data System (ADS)

    Fernández-Oliveras, Alicia; Pozo, Antonio M.; Rubiño, Manuel

    2013-01-01

    Charge-coupled device (CCD) and complementary metal-oxide semiconductor (CMOS) matrices offer excellent features in imaging systems. For assessing the suitability of each technology according to the application, the complete characterization of the detector arrays becomes necessary. A system is optically characterized by the modulation transfer function (MTF). We have comparatively studied the results provided by the speckle method for detectors of two types: CCD and CMOS. To do so, we first analysed the precision in determining the MTF of the CCD using two apertures at the exit port of an integrating sphere: a single and a double-slit. For the single-slit, we propose a new procedure of fitting the experimental data which overcomes the drawbacks of the conventional procedure. Since it offered lower uncertainty and better reproducibility, the single-slit was used for the study with the CMOS detector. Significant differences were found between the MTF of the CCD and the CMOS detectors.

  16. Surface Acoustic Wave Scattering from an Array of Irregularities Comparable with a Wavelength

    NASA Astrophysics Data System (ADS)

    Yankin, Sergey S.; Suchkov, Sergey G.; Shatrova, Iuliia A.; Suchkov, Dmitry S.; Komkov, Sergey V.; Pilovets, Aleksey A.; Nikitov, Sergey A.

    The properly defined reflection, transmission and scattering coefficients were numerically evaluated as functions of the reflector's thickness, from infinitively small to comparable with wavelength. It was shown that these dependencies for projections are quasi-periodic and related to excitation of Eigen resonance modes in array of reflectors. In contrast to projections scattering from deep grooves does not have periodic behavior and with the depth's growth SAW scattering into volume increases while reflection coefficient doesn't reach more than 40%. The calculation of the 2D pattern of the scattered fields makes it possible to estimate the reflecting structures efficiency and clearly shows the range of the parameters for which an intensive SAW-energy radiation into the bulk occurs.

  17. Responses of Murine and Human Macrophages to Leptospiral Infection: A Study Using Comparative Array Analysis

    PubMed Central

    Yang, Yingchao; Zhao, Jinping; Yang, Yutao; Cao, Yongguo; Hong, Cailing; Liu, Yuan; Sun, Lan; Huang, Minjun; Gu, Junchao

    2013-01-01

    Leptospirosis is a re-emerging tropical infectious disease caused by pathogenic Leptospira spp. The different host innate immune responses are partially related to the different severities of leptospirosis. In this study, we employed transcriptomics and cytokine arrays to comparatively calculate the responses of murine peritoneal macrophages (MPMs) and human peripheral blood monocytes (HBMs) to leptospiral infection. We uncovered a series of different expression profiles of these two immune cells. The percentages of regulated genes in several biological processes of MPMs, such as antigen processing and presentation, membrane potential regulation, and the innate immune response, etc., were much greater than those of HBMs (>2-fold). In MPMs and HBMs, the caspase-8 and Fas-associated protein with death domain (FADD)-like apoptosis regulator genes were significantly up-regulated, which supported previous results that the caspase-8 and caspase-3 pathways play an important role in macrophage apoptosis during leptospiral infection. In addition, the key component of the complement pathway, C3, was only up-regulated in MPMs. Furthermore, several cytokines, e.g. interleukin 10 (IL-10) and tumor necrosis factor alpha (TNF-alpha), were differentially expressed at both mRNA and protein levels in MPMs and HBMs. Some of the differential expressions were proved to be pathogenic Leptospira-specific regulations at mRNA level or protein level. Though it is still unclear why some animals are resistant and others are susceptible to leptospiral infection, this comparative study based on transcriptomics and cytokine arrays partially uncovered the differences of murine resistance and human susceptibility to leptospirosis. Taken together, these findings will facilitate further molecular studies on the innate immune response to leptospiral infection. PMID:24130911

  18. Composite treatment of ceramic tile armor

    DOEpatents

    Hansen, James G. R.; Frame, Barbara J.

    2012-01-02

    An improved ceramic tile armor has a core of boron nitride and a polymer matrix composite (PMC) facing of carbon fibers fused directly to the impact face of the tile. A polyethylene fiber composite backing and spall cover are preferred. The carbon fiber layers are cured directly onto the tile, not adhered using a separate adhesive so that they are integral with the tile, not a separate layer.

  19. Composite treatment of ceramic tile armor

    DOEpatents

    Hansen, James G. R. [Oak Ridge, TN; Frame, Barbara J [Oak Ridge, TN

    2010-12-14

    An improved ceramic tile armor has a core of boron nitride and a polymer matrix composite (PMC) facing of carbon fibers fused directly to the impact face of the tile. A polyethylene fiber composite backing and spall cover are preferred. The carbon fiber layers are cured directly onto the tile, not adhered using a separate adhesive so that they are integral with the tile, not a separate layer.

  20. Thermodynamics and Kinetics of DNA Tile-Based Self-Assembly

    NASA Astrophysics Data System (ADS)

    Jiang, Shuoxing

    Deoxyribonucleic acid (DNA) has emerged as an attractive building material for creating complex architectures at the nanometer scale that simultaneously affords versatility and modularity. Particularly, the programmability of DNA enables the assembly of basic building units into increasingly complex, arbitrary shapes or patterns. With the expanding complexity and functionality of DNA toolboxes, a quantitative understanding of DNA self-assembly in terms of thermodynamics and kinetics, will provide researchers with more subtle design guidelines that facilitate more precise spatial and temporal control. This dissertation focuses on studying the physicochemical properties of DNA tile-based self-assembly process by recapitulating representative scenarios and intermediate states with unique assembly pathways. First, DNA double-helical tiles with increasing flexibility were designed to investigate the dimerization kinetics. The higher dimerization rates of more rigid tiles result from the opposing effects of higher activation energies and higher pre-exponential factors from the Arrhenius equation, where the pre-exponential factor dominates. Next, the thermodynamics and kinetics of single tile attachment to preformed "multitile" arrays were investigated to test the fundamental assumptions of tile assembly models. The results offer experimental evidences that double crossover tile attachment is determined by the electrostatic environment and the steric hindrance at the binding site. Finally, the assembly of double crossover tiles within a rhombic DNA origami frame was employed as the model system to investigate the competition between unseeded, facet and seeded nucleation. The results revealed that preference of nucleation types can be tuned by controlling the rate-limiting nucleation step. The works presented in this dissertation will be helpful for refining the DNA tile assembly model for future designs and simulations. Moreover, The works presented here could also be

  1. Array-Based Comparative Genomic Hybridization for the Genomewide Detection of Submicroscopic Chromosomal Abnormalities

    PubMed Central

    Vissers, Lisenka E. L. M. ; de Vries, Bert B. A. ; Osoegawa, Kazutoyo ; Janssen, Irene M. ; Feuth, Ton ; Choy, Chik On ; Straatman, Huub ; van der Vliet, Walter ; Huys, Erik H. L. P. G. ; van Rijk, Anke ; Smeets, Dominique ; van Ravenswaaij-Arts, Conny M. A. ; Knoers, Nine V. ; van der Burgt, Ineke ; de Jong, Pieter J. ; Brunner, Han G. ; van Kessel, Ad Geurts ; Schoenmakers, Eric F. P. M. ; Veltman, Joris A. 

    2003-01-01

    Microdeletions and microduplications, not visible by routine chromosome analysis, are a major cause of human malformation and mental retardation. Novel high-resolution, whole-genome technologies can improve the diagnostic detection rate of these small chromosomal abnormalities. Array-based comparative genomic hybridization allows such a high-resolution screening by hybridizing differentially labeled test and reference DNAs to arrays consisting of thousands of genomic clones. In this study, we tested the diagnostic capacity of this technology using ∼3,500 flourescent in situ hybridization–verified clones selected to cover the genome with an average of 1 clone per megabase (Mb). The sensitivity and specificity of the technology were tested in normal-versus-normal control experiments and through the screening of patients with known microdeletion syndromes. Subsequently, a series of 20 cytogenetically normal patients with mental retardation and dysmorphisms suggestive of a chromosomal abnormality were analyzed. In this series, three microdeletions and two microduplications were identified and validated. Two of these genomic changes were identified also in one of the parents, indicating that these are large-scale genomic polymorphisms. Deletions and duplications as small as 1 Mb could be reliably detected by our approach. The percentage of false-positive results was reduced to a minimum by use of a dye-swap-replicate analysis, all but eliminating the need for laborious validation experiments and facilitating implementation in a routine diagnostic setting. This high-resolution assay will facilitate the identification of novel genes involved in human mental retardation and/or malformation syndromes and will provide insight into the flexibility and plasticity of the human genome. PMID:14628292

  2. Array Comparative Genomic Hybridization (aCGH) Analysis in Patients with Anophthalmia, Microphthalmia and Coloboma

    PubMed Central

    Raca, Gordana; Jackson, Craig A.; Kucinskas, Laimutis; Warman, Berta; Shieh, Joseph T. C.; Schneider, Adele; Bardakjian, Tanya M.; Schimmenti, Lisa A.

    2014-01-01

    Purpose The goal of our study was to determine whether genomic copy number abnormalities (deletions and duplications) affecting genes involved in eye development contribute to the etiology of anophthalmia, microphthalmia and coloboma. Methods The affected individuals were tested for deletions and duplications in genomic DNA using 2 million probe (HD2) comparative genomic hybridization arrays (aCGH) from Roche-NimbleGen. Results Array analysis of 32 patients detected one case with a deletion encompassing the Renal-coloboma syndrome associated gene PAX2. Non-polymorphic copy number changes were also observed at several candidate chromosomal regions, including 6p12.3, 8q23.1q23.2, 13q31.3, 15q11.2q13.1, 16p13.13 and 20q13.13. Conclusions This study identified the first patient with the typical phenotype of the Renal-coloboma syndrome caused by a submicroscopic deletion of the coding region of the PAX2 gene. The finding suggests that PAX2 deletion testing should be performed in addition to gene sequencing as a part of molecular evaluation for the Renal-coloboma syndrome. aCGH testing of 32 affected individual showed that genomic deletions and duplications are not a common cause of non-syndromic anophthalmia, microphthalmia and/or coloboma, but undoubtedly contribute to the etiology of these eye anomalies. aCGH testing therefore represents an important and valuable addition to candidate gene sequencing in research and diagnostics of ocular birth defects. PMID:21285886

  3. Isolation of disseminated neuroblastoma cells from bone marrow aspirates for pretreatment risk assessment by array comparative genomic hybridization.

    PubMed

    Vandewoestyne, Mado; Kumps, Candy; Swerts, Katrien; Menten, Björn; Lammens, Tim; Philippé, Jan; De Preter, Katleen; Laureys, Geneviève; Van Roy, Nadine; Speleman, Frank; Deforce, Dieter

    2012-03-01

    In neuroblastoma, tumor biopsies are used for prognostic evaluation and risk assessment by molecular genetic analyses such as fluorescence in situ hybridization (FISH) and array comparative genomic hybridization (array CGH). Analysis of primary tumors by array CGH can be hampered by the lack of sufficient tumor cells due to small biopsy size or availability of invaded bone marrow only. Given the importance of accurate assessment of genetic alterations in the diagnostic work-up of patients with neuroblastoma, we evaluated the possibility to analyze bone marrow metastases in patients with disseminated disease. Disseminated neuroblastoma cells were isolated from bone marrow aspirates by using either laser capture microdissection (LCM) or magnetic activated cell sorting (MACS). The array CGH profiles of these isolated metastases were compared to array CGH profiles and/or FISH data of the corresponding primary tumor. Here, we show that the major recurrent DNA copy number alterations detected in primary neuroblastoma tumors (i.e., 1p, 3p and 11q deletion, 17q gain and MYCN amplification) can be detected, with high sensitivity and specificity, in the disseminated neuroblastoma cells isolated from the bone marrow aspirates, using an array platform with high coverage for these regions. Moreover, we demonstrate that for archived material, for example, for retrospective studies, LCM is the method of choice, while for fresh bone marrow aspirates, acquired at the time of diagnosis, MACS is superior. PMID:21484798

  4. Prenatal diagnosis of chromosomal abnormalities using array-based comparative genomic hybridization

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This study was designed to evaluate the feasibility of using a targeted array-CGH strategy for prenatal diagnosis of genomic imbalances in a clinical setting of current pregnancies. Women undergoing prenatal diagnosis were counseled and offered array-CGH (BCM V4.0) in addition to routine chromosome ...

  5. Algebraic properties of basic isohedral marked tilings

    NASA Astrophysics Data System (ADS)

    Greco, Gabriele H.

    2006-05-01

    In 1977 Grünbaum and Shephard described all possible 93 types of isohedral marked tilings of the plane; 46 of them are called basic, since their induced tile group is trivial. The aim of this paper is to give an algebraic description of all basic tilings. A purely algebraic characterization of the adjacency symmetries of tiles of the 46 basic tilings is presented. Moreover, 46 related abstract definitions of two-dimensional crystallographic groups supplement and extend those of the well-known book Generators and Relations for Discrete Groups by Coxeter and Moser.

  6. Comparative analyses of Podospora anserina secretomes reveal a large array of lignocellulose-active enzymes.

    PubMed

    Poidevin, Laetitia; Berrin, Jean-Guy; Bennati-Granier, Chloé; Levasseur, Anthony; Herpoël-Gimbert, Isabelle; Chevret, Didier; Coutinho, Pedro M; Henrissat, Bernard; Heiss-Blanquet, Senta; Record, Eric

    2014-09-01

    The genome of the coprophilous fungus Podospora anserina harbors a large and highly diverse set of putative lignocellulose-acting enzymes. In this study, we investigated the enzymatic diversity of a broad range of P. anserina secretomes induced by various carbon sources (dextrin, glucose, xylose, arabinose, lactose, cellobiose, saccharose, Avicel, Solka-floc, birchwood xylan, wheat straw, maize bran, and sugar beet pulp (SBP)). Compared with the Trichoderma reesei enzymatic cocktail, P. anserina secretomes displayed similar cellulase, xylanase, and pectinase activities and greater arabinofuranosidase, arabinanase, and galactanase activities. The secretomes were further tested for their capacity to supplement a T. reesei cocktail. Four of them improved significantly the saccharification yield of steam-exploded wheat straw up to 48 %. Fine analysis of the P. anserina secretomes produced with Avicel and SBP using proteomics revealed a large array of CAZymes with a high number of GH6 and GH7 cellulases, CE1 esterases, GH43 arabinofuranosidases, and AA1 laccase-like multicopper oxidases. Moreover, a preponderance of AA9 (formerly GH61) was exclusively produced in the SBP condition. This study brings additional insights into the P. anserina enzymatic machinery and will facilitate the selection of promising targets for the development of future biorefineries. PMID:24695830

  7. Homozygous losses detected by array comparative genomic hybridization in multiplex urothelial carcinomas of the bladder.

    PubMed

    Beothe, Tamas; Zubakov, Dmitry; Kovacs, Gyula

    2015-09-01

    Urothelial carcinomas (UCs) may present at first as a solitary or multifocal neoplasm. We applied high resolution array comparative genomic hybridization to 24 solitary and 32 multiplex UCs and used the hidden Markov model algorithm to identify the copy number changes at the probe level. Copy number losses and homozygous deletions at the chromosome 9p region affecting the CDKN2A and MTAP genes were the most frequent alterations in both groups of tumors. We have delineated two new tumor suppressor gene regions at chromosome 9p that harbor the PTPRD and BNC2 genes. Copy number losses at chromosomal regions 2q, 8p, and 18p occurred preferentially in solitary UCs, whereas multiplex UCs displayed loss of large chromosomal regions at 9q, 10q, 11q, 18q, and 21q. Homozygous deletions harboring loci of cell adhesion genes such as claudins, desmocollins, and desmogleins were seen exclusively in multiplex UCs. Amplifications occurred only in invasive G3 UCs irrespective of staging. Our study suggests that solitary and multiplex UCs may have divergent genetic pathways. The biallelic inactivation of cellular adhesion genes by homozygous deletions in multiplex UCs may explain the frequent intravesical spreading of tumor cells. . PMID:26235493

  8. Exome sequencing and array-based comparative genomic hybridisation analysis of preferential 6-methylmercaptopurine producers.

    PubMed

    Chua, E W; Cree, S; Barclay, M L; Doudney, K; Lehnert, K; Aitchison, A; Kennedy, M A

    2015-10-01

    Preferential conversion of azathioprine or 6-mercaptopurine into methylated metabolites is a major cause of thiopurine resistance. To seek potentially Mendelian causes of thiopurine hypermethylation, we recruited 12 individuals who exhibited extreme therapeutic resistance while taking azathioprine or 6-mercaptopurine and performed whole-exome sequencing (WES) and copy-number variant analysis by array-based comparative genomic hybridisation (aCGH). Exome-wide variant filtering highlighted four genes potentially associated with thiopurine metabolism (ENOSF1 and NFS1), transport (SLC17A4) or therapeutic action (RCC2). However, variants of each gene were found only in two or three patients, and it is unclear whether these genes could influence thiopurine hypermethylation. Analysis by aCGH did not identify any unusual or pathogenic copy-number variants. This suggests that if causative mutations for the hypermethylation phenotype exist they may be heterogeneous, occurring in several different genes, or they may lie within regulatory regions not captured by WES. Alternatively, hypermethylation may arise from the involvement of multiple genes with small effects. To test this hypothesis would require recruitment of large patient samples and application of genome-wide association studies. PMID:25752523

  9. Genomic copy number alterations in 33 malignant peritoneal mesothelioma analyzed by comparative genomic hybridization array.

    PubMed

    Chirac, Pierre; Maillet, Denis; Leprêtre, Frédéric; Isaac, Sylvie; Glehen, Olivier; Figeac, Martin; Villeneuve, Laurent; Péron, Julien; Gibson, Fernando; Galateau-Sallé, Françoise; Gilly, François-Noël; Brevet, Marie

    2016-09-01

    Malignant peritoneal mesotheliomas (MPM) are rare, accounting for approximately 8% of cases of mesothelioma in France. We performed comparative genomic hybridization (CGH) on frozen MPM samples using the Agilent Human Genome CGH 180 K array. Samples were taken from a total of 33 French patients, comprising 20 men and 13 women with a mean (range) age of 58.4 (17-76) years. Asbestos exposure was reported in 8 patients (24.2%). Median (range) overall survival (OS) was 39 (0-119) months. CGH analysis demonstrated the presence of chromosomal instability in patients with MPM, with a genomic pattern that was similar to that described for pleural mesothelioma, including the loss of chromosomal regions 3p21, 9p21, and 22q12. In addition, novel genomic copy number alterations were identified, including the 15q26.2 region and the 8p11.22 region. Median OS was associated with a low peritoneal cancer index (P=.011), epithelioid subtype (P=.038), and a low number of genomic aberrations (P=.015), all of which constitute good prognostic factors for MPM. Our results provide new insights into the genetic and genomic background of MPM. Although pleural and peritoneal mesotheliomas have different risk factors, different therapeutics, and different prognosis; these data provide support to combine pleural and peritoneal mesothelioma in same clinical assays. PMID:27184482

  10. Foam on Tile Impact Modeling for the Space Shuttle Program

    NASA Technical Reports Server (NTRS)

    Stellingwerf, R. F.; Robinson, J. H.; Richardson, S.; Evans, S. W.; Stallworth, R.; Hovater, M.

    2003-01-01

    Following the breakup of the Space Shuttle Columbia during reentry a NASA-wide investigation team was formed to examine the probable damage inflicted on Orbiter Thermal Protection System (TPS) elements by impact of External Tank insulating foam projectiles. Our team was to apply rigorous, physics-based analysis techniques to help determine parameters of interest for an experimental test program, utilize validated codes to investigate the full range of impact scenarios, and use analysis derived models to predict aero-thermal-structural responses to entry conditions. We were to operate on a non-interference basis with the j Team, and were to supply significant findings to that team and to the Orbiter Vehicle Engineering Working Group, being responsive to any solicitations for support from these entities. The authors formed a working sub-group within the larger team to apply the Smooth Particle Hydrodynamics code SPHC to the damage estimation problem. Numerical models of the LI-900 TPS tiles and of the BX-250 foam were constructed and used as inputs into the code. Material properties needed to properly model the tiles and foam were obtained from other working sub-groups who performed tests on these items for this purpose. Two- and three- dimensional models of the tiles were constructed, including the glass outer layer, the densified lower layer of LI-900 insulation, the Nomex felt Strain Isolation Pad (SIP) mounting layer, and the underlying aluminum 2024 vehicle skin. A model for the BX-250 foam including porous compression, elastic rebound, and surface erosion was developed. Code results for the tile damage and foam behavior were extensively validated through comparison with the Southwest Research Institute (SwRI) foam-on-tile impact experiments carried out in 1999. These tests involved small projectiles striking individual tiles and small tile arrays. Following code and model validation we simulated impacts of larger ET foam projectiles on the TPS tile systems used

  11. Identification of Genomic Alterations in Pancreatic Cancer Using Array-Based Comparative Genomic Hybridization

    PubMed Central

    Liang, Jian-Wei; Shi, Zhi-Zhou; Shen, Tian-Yun; Che, Xu; Wang, Zheng; Shi, Su-Sheng; Xu, Xin; Cai, Yan; Zhao, Ping; Wang, Cheng-Feng; Zhou, Zhi-Xiang; Wang, Ming-Rong

    2014-01-01

    Background Genomic aberration is a common feature of human cancers and also is one of the basic mechanisms that lead to overexpression of oncogenes and underexpression of tumor suppressor genes. Our study aims to identify frequent genomic changes in pancreatic cancer. Materials and Methods We used array comparative genomic hybridization (array CGH) to identify recurrent genomic alterations and validated the protein expression of selected genes by immunohistochemistry. Results Sixteen gains and thirty-two losses occurred in more than 30% and 60% of the tumors, respectively. High-level amplifications at 7q21.3–q22.1 and 19q13.2 and homozygous deletions at 1p33–p32.3, 1p22.1, 1q22, 3q27.2, 6p22.3, 6p21.31, 12q13.2, 17p13.2, 17q21.31 and 22q13.1 were identified. Especially, amplification of AKT2 was detected in two carcinomas and homozygous deletion of CDKN2C in other two cases. In 15 independent validation samples, we found that AKT2 (19q13.2) and MCM7 (7q22.1) were amplified in 6 and 9 cases, and CAMTA2 (17p13.2) and PFN1 (17p13.2) were homozygously deleted in 3 and 1 cases. AKT2 and MCM7 were overexpressed, and CAMTA2 and PFN1 were underexpressed in pancreatic cancer tissues than in morphologically normal operative margin tissues. Both GISTIC and Genomic Workbench software identified 22q13.1 containing APOBEC3A and APOBEC3B as the only homozygous deletion region. And the expression levels of APOBEC3A and APOBEC3B were significantly lower in tumor tissues than in morphologically normal operative margin tissues. Further validation showed that overexpression of PSCA was significantly associated with lymph node metastasis, and overexpression of HMGA2 was significantly associated with invasive depth of pancreatic cancer. Conclusion These recurrent genomic changes may be useful for revealing the mechanism of pancreatic carcinogenesis and providing candidate biomarkers. PMID:25502777

  12. Fractal tiles associated with shift radix systems.

    PubMed

    Berthé, Valérie; Siegel, Anne; Steiner, Wolfgang; Surer, Paul; Thuswaldner, Jörg M

    2011-01-15

    Shift radix systems form a collection of dynamical systems depending on a parameter r which varies in the d-dimensional real vector space. They generalize well-known numeration systems such as beta-expansions, expansions with respect to rational bases, and canonical number systems. Beta-numeration and canonical number systems are known to be intimately related to fractal shapes, such as the classical Rauzy fractal and the twin dragon. These fractals turned out to be important for studying properties of expansions in several settings. In the present paper we associate a collection of fractal tiles with shift radix systems. We show that for certain classes of parameters r these tiles coincide with affine copies of the well-known tiles associated with beta-expansions and canonical number systems. On the other hand, these tiles provide natural families of tiles for beta-expansions with (non-unit) Pisot numbers as well as canonical number systems with (non-monic) expanding polynomials. We also prove basic properties for tiles associated with shift radix systems. Indeed, we prove that under some algebraic conditions on the parameter r of the shift radix system, these tiles provide multiple tilings and even tilings of the d-dimensional real vector space. These tilings turn out to have a more complicated structure than the tilings arising from the known number systems mentioned above. Such a tiling may consist of tiles having infinitely many different shapes. Moreover, the tiles need not be self-affine (or graph directed self-affine). PMID:24068835

  13. Array tomography: production of arrays.

    PubMed

    Micheva, Kristina D; O'Rourke, Nancy; Busse, Brad; Smith, Stephen J

    2010-11-01

    Array tomography is a volumetric microscopy method based on physical serial sectioning. Ultrathin sections of a plastic-embedded tissue are cut using an ultramicrotome, bonded in an ordered array to a glass coverslip, stained as desired, and imaged. The resulting two-dimensional image tiles can then be reconstructed computationally into three-dimensional volume images for visualization and quantitative analysis. The minimal thickness of individual sections permits high-quality rapid staining and imaging, whereas the array format allows reliable and convenient section handling, staining, and automated imaging. Also, the physical stability of the arrays permits images to be acquired and registered from repeated cycles of staining, imaging, and stain elution, as well as from imaging using multiple modalities (e.g., fluorescence and electron microscopy). Array tomography makes it possible to visualize and quantify previously inaccessible features of tissue structure and molecular architecture. However, careful preparation of the tissue is essential for successful array tomography; these steps can be time consuming and require some practice to perfect. This protocol describes the sectioning of embedded tissues and the mounting of the serial arrays. The procedures require some familiarity with the techniques used for ultramicrotome sectioning for electron microscopy. PMID:21041397

  14. Array tomography: imaging stained arrays.

    PubMed

    Micheva, Kristina D; O'Rourke, Nancy; Busse, Brad; Smith, Stephen J

    2010-11-01

    Array tomography is a volumetric microscopy method based on physical serial sectioning. Ultrathin sections of a plastic-embedded tissue are cut using an ultramicrotome, bonded in an ordered array to a glass coverslip, stained as desired, and imaged. The resulting two-dimensional image tiles can then be reconstructed computationally into three-dimensional volume images for visualization and quantitative analysis. The minimal thickness of individual sections permits high-quality rapid staining and imaging, whereas the array format allows reliable and convenient section handling, staining, and automated imaging. Also, the physical stability of the arrays permits images to be acquired and registered from repeated cycles of staining, imaging, and stain elution, as well as from imaging using multiple modalities (e.g., fluorescence and electron microscopy). Array tomography makes it possible to visualize and quantify previously inaccessible features of tissue structure and molecular architecture. However, careful preparation of the tissue is essential for successful array tomography; these steps can be time-consuming and require some practice to perfect. In this protocol, tissue arrays are imaged using conventional wide-field fluorescence microscopy. Images can be captured manually or, with the appropriate software and hardware, the process can be automated. PMID:21041399

  15. Beautiful math, part 2: aesthetic patterns based on fractal tilings.

    PubMed

    Peichang Ouyang; Fathauer, Robert W

    2014-01-01

    A fractal tiling (f-tiling) is a tiling whose boundary is fractal. This article presents two families of rare, infinitely many f-tilings. Each f-tiling is constructed by reducing tiles by a fixed scaling factor, using a single prototile, which is a segment of a regular polygon. The authors designed invariant mappings to automatically produce appealing seamless, colored patterns from such tilings. PMID:24808170

  16. Comparative research on the optical properties of three surface patterning ZnO ordered arrays

    NASA Astrophysics Data System (ADS)

    Hou, Kai; Zhu, Ya-Bin; Qiao, Lu

    2015-12-01

    We fabricate three surface patterning zinc oxide (ZnO) ordered arrays on glass substrates by using nanosphere lithography technique and dc magnetron sputtering technique. The crescent, tube and honeycomb surface morphologies of the samples are observed by scanning electron microscopy. The transmittance, fluorescence and confocal Raman spectra of the sample are measured. Obviously, when the angle between the plume and the substrate is 90°, the honeycomb arrays have a better transmission. Additionally, the PL intensity of honeycomb arrays is superior. With the increasing of the angle between the substrate and the sputtering plume, the fluorescence peak shows blue shift. The Raman peak located at 438 cm- 1 belongs to ZnO E2 (high) mode, which corresponds to the characteristic band of the hexagonal wurtzite phase. The tube arrays have the best Raman spectrum intensity.

  17. A comparative study of feed impedances of a circular and three different spiral antenna arrays

    NASA Astrophysics Data System (ADS)

    Ramachandra, V.; Dey, K. K.; Khastgir, P.

    1982-08-01

    Mathematical derivation of feed impedances of the dipole radiators of a circular and three different spiral arrays has been made for both constant and progressive phase distributions. A set of graphs, which show the variations of these impedances and their components from radiator to radiator, has been obtained. Spiral distributions of impedances can be observed on the Argand diagram in the cases of the three spiral arrays.

  18. Developing tiled projection display systems

    SciTech Connect

    Hereld, M.; Judson, I. R.; Paris, J.; Stevens, R. L.

    2000-06-08

    Tiled displays are an emerging technology for constructing high-resolution semi-immersive visualization environments capable of presenting high-resolution images from scientific simulation [EVL, PowerWall]. In this way, they complement other technologies such as the CAVE [Cruz-Niera92] or ImmersaDesk, [Czernuszenko97], which by design give up pure resolution in favor of width of view and stereo. However, the largest impact may well be in using large-format tiled displays as one of possibly multiple displays in building ''information'' or ''active'' spaces that surround the user with diverse ways of interacting with data and multimedia information flows [IPSI, Childers00, Raskar98, ROME, Stanford, UNC]. These environments may prove to be the ultimate successor of the desktop metaphor for information technology work.

  19. Geometrical Tile Design for Complex Neighborhoods

    PubMed Central

    Czeizler, Eugen; Kari, Lila

    2009-01-01

    Recent research has showed that tile systems are one of the most suitable theoretical frameworks for the spatial study and modeling of self-assembly processes, such as the formation of DNA and protein oligomeric structures. A Wang tile is a unit square, with glues on its edges, attaching to other tiles and forming larger and larger structures. Although quite intuitive, the idea of glues placed on the edges of a tile is not always natural for simulating the interactions occurring in some real systems. For example, when considering protein self-assembly, the shape of a protein is the main determinant of its functions and its interactions with other proteins. Our goal is to use geometric tiles, i.e., square tiles with geometrical protrusions on their edges, for simulating tiled paths (zippers) with complex neighborhoods, by ribbons of geometric tiles with simple, local neighborhoods. This paper is a step toward solving the general case of an arbitrary neighborhood, by proposing geometric tile designs that solve the case of a “tall” von Neumann neighborhood, the case of the f-shaped neighborhood, and the case of a 3 × 5 “filled” rectangular neighborhood. The techniques can be combined and generalized to solve the problem in the case of any neighborhood, centered at the tile of reference, and included in a 3 × (2k + 1) rectangle. PMID:19956398

  20. Geometrical tile design for complex neighborhoods.

    PubMed

    Czeizler, Eugen; Kari, Lila

    2009-01-01

    Recent research has showed that tile systems are one of the most suitable theoretical frameworks for the spatial study and modeling of self-assembly processes, such as the formation of DNA and protein oligomeric structures. A Wang tile is a unit square, with glues on its edges, attaching to other tiles and forming larger and larger structures. Although quite intuitive, the idea of glues placed on the edges of a tile is not always natural for simulating the interactions occurring in some real systems. For example, when considering protein self-assembly, the shape of a protein is the main determinant of its functions and its interactions with other proteins. Our goal is to use geometric tiles, i.e., square tiles with geometrical protrusions on their edges, for simulating tiled paths (zippers) with complex neighborhoods, by ribbons of geometric tiles with simple, local neighborhoods. This paper is a step toward solving the general case of an arbitrary neighborhood, by proposing geometric tile designs that solve the case of a "tall" von Neumann neighborhood, the case of the f-shaped neighborhood, and the case of a 3 x 5 "filled" rectangular neighborhood. The techniques can be combined and generalized to solve the problem in the case of any neighborhood, centered at the tile of reference, and included in a 3 x (2k + 1) rectangle. PMID:19956398

  1. Genomic Characterization of Prenatally Detected Chromosomal Structural Abnormalities Using Oligonucleotide Array Comparative Genomic Hybridization

    PubMed Central

    Li, Peining; Pomianowski, Pawel; DiMaio, Miriam S.; Florio, Joanne R.; Rossi, Michael R.; Xiang, Bixia; Xu, Fang; Yang, Hui; Geng, Qian; Xie, Jiansheng; Mahoney, Maurice J.

    2013-01-01

    Detection of chromosomal structural abnormalities using conventional cytogenetic methods poses a challenge for prenatal genetic counseling due to unpredictable clinical outcomes and risk of recurrence. Of the 1,726 prenatal cases in a 3-year period, we performed oligonucleotide array comparative genomic hybridization (aCGH) analysis on 11 cases detected with various structural chromosomal abnormalities. In nine cases, genomic aberrations and gene contents involving a 3p distal deletion, a marker chromosome from chromosome 4, a derivative chromosome 5 from a 5p/7q translocation, a de novo distal 6q deletion, a recombinant chromosome 8 comprised of an 8p duplication and an 8q deletion, an extra derivative chromosome 9 from an 8p/9q translocation, mosaicism for chromosome 12q with added material of initially unknown origin, an unbalanced 13q/15q rearrangement, and a distal 18q duplication and deletion were delineated. An absence of pathogenic copy number changes was noted in one case with a de novo 11q/14q translocation and in another with a familial insertion of 21q into a 19q. Genomic characterization of the structural abnormalities aided in the prediction of clinical outcomes. These results demonstrated the value of aCGH analysis in prenatal cases with subtle or complex chromosomal rearrangements. Furthermore, a retrospective analysis of clinical indications of our prenatal cases showed that approximately 20% of them had abnormal ultrasound findings and should be considered as high risk pregnancies for a combined chromosome and aCGH analysis. PMID:21671377

  2. Comparative cytogenetic characterization of primary canine melanocytic lesions using array CGH and fluorescence in situ hybridization.

    PubMed

    Poorman, Kelsey; Borst, Luke; Moroff, Scott; Roy, Siddharth; Labelle, Philippe; Motsinger-Reif, Alison; Breen, Matthew

    2015-06-01

    Melanocytic lesions originating from the oral mucosa or cutaneous epithelium are common in the general dog population, with up to 100,000 diagnoses each year in the USA. Oral melanoma is the most frequent canine neoplasm of the oral cavity, exhibiting a highly aggressive course. Cutaneous melanocytomas occur frequently, but rarely develop into a malignant form. Despite the differential prognosis, it has been assumed that subtypes of melanocytic lesions represent the same disease. To address the relative paucity of information about their genomic status, molecular cytogenetic analysis was performed on the three recognized subtypes of canine melanocytic lesions. Using array comparative genomic hybridization (aCGH) analysis, highly aberrant distinct copy number status across the tumor genome for both of the malignant melanoma subtypes was revealed. The most frequent aberrations included gain of dog chromosome (CFA) 13 and 17 and loss of CFA 22. Melanocytomas possessed fewer genome wide aberrations, yet showed a recurrent gain of CFA 20q15.3-17. A distinctive copy number profile, evident only in oral melanomas, displayed a sigmoidal pattern of copy number loss followed immediately by a gain, around CFA 30q14. Moreover, when assessed by fluorescence in situ hybridization (FISH), copy number aberrations of targeted genes, such as gain of c-MYC (80 % of cases) and loss of CDKN2A (68 % of cases), were observed. This study suggests that in concordance with what is known for human melanomas, canine melanomas of the oral mucosa and cutaneous epithelium are discrete and initiated by different molecular pathways. PMID:25511566

  3. Shuttle Upgrade Program: Tile TPS

    NASA Technical Reports Server (NTRS)

    Leiser, Daniel B.; Stewart, David A.; DiFiore, Robert; Irby, Ed; Arnold, James (Technical Monitor)

    2001-01-01

    One of the areas where the thermal protection system on the Space Shuttle Orbiter could be improved is the RSI (Reusable Surface Insulation) tile. The improvement would be in damage resistance that would reduce the resultant maintenance and inspection required. It has performed very well in every other aspect. Improving the system's damage resistance has been the subject of much research over the past several years. One of the results of that research was a new system developed for damage prone areas on the orbiter (i.e., base heat shield). That system, designated as TUFI, Toughened Uni-Piece Fibrous Insulation, was successfully demonstrated as an experiment on the Orbiter and is now baselined for the base heat shield. This paper describes the results of a current research program to further improve the TUFI tile system, thus making it applicable to more areas on the orbiter. The way to remove the current limitations of the TUFI system (i.e., weight or thermal conductivity differences between it and the baseline tile (LI-900)) is to improve the characteristics of LI-900 or AETB-8. Specifically this paper describes the results of two efforts. The first shows performance data of an improved LI-900 system involving the application of TUFI and the second describes data that shows a reduced difference in thermal conductivity between the advanced TUFI substrate (AETB-8) now used on the orbiter and LI-900.

  4. Programmable DNA tile self-assembly using a hierarchical sub-tile strategy

    NASA Astrophysics Data System (ADS)

    Shi, Xiaolong; Lu, Wei; Wang, Zhiyu; Pan, Linqiang; Cui, Guangzhao; Xu, Jin; LaBean, Thomas H.

    2014-02-01

    DNA tile based self-assembly provides a bottom-up approach to construct desired nanostructures. DNA tiles have been directly constructed from ssDNA and readily self-assembled into 2D lattices and 3D superstructures. However, for more complex lattice designs including algorithmic assemblies requiring larger tile sets, a more modular approach could prove useful. This paper reports a new DNA ‘sub-tile’ strategy to easily create whole families of programmable tiles. Here, we demonstrate the stability and flexibility of our sub-tile structures by constructing 3-, 4- and 6-arm DNA tiles that are subsequently assembled into 2D lattices and 3D nanotubes according to a hierarchical design. Assembly of sub-tiles, tiles, and superstructures was analyzed using polyacrylamide gel electrophoresis and atomic force microscopy. DNA tile self-assembly methods provide a bottom-up approach to create desired nanostructures; the sub-tile strategy adds a useful new layer to this technique. Complex units can be made from simple parts. The sub-tile approach enables the rapid redesign and prototyping of complex DNA tile sets and tiles with asymmetric designs.

  5. Comparative efficiency analysis of fiber-array and conventional beam director systems in volume turbulence.

    PubMed

    Vorontsov, Mikhail; Filimonov, Grigory; Ovchinnikov, Vladimir; Polnau, Ernst; Lachinova, Svetlana; Weyrauch, Thomas; Mangano, Joseph

    2016-05-20

    The performance of two prominent laser beam projection system types is analyzed through wave-optics numerical simulations for various atmospheric turbulence conditions, propagation distances, and adaptive optics (AO) mitigation techniques. Comparisons are made between different configurations of both a conventional beam director (BD) using a monolithic-optics-based Cassegrain telescope and a fiber-array BD that uses an array of densely packed fiber collimators. The BD systems considered have equal input power and aperture diameters. The projected laser beam power inside the Airy size disk at the target plane is used as the performance metric. For the fiber-array system, both incoherent and coherent beam combining regimes are considered. We also present preliminary results of side-by-side atmospheric beam projection experiments over a 7-km propagation path using both the AO-enhanced beam projection system with a Cassegrain telescope and the coherent fiber-array BD composed of 21 densely packed fiber collimators. Both wave-optics numerical simulation and experimental results demonstrate that, for similar system architectures and turbulence conditions, coherent fiber-array systems are more efficient in mitigation of atmospheric turbulence effects and generation of a hit spot of the smallest possible size on a remotely located target. PMID:27411147

  6. Application of laser-based methods and finite element analysis to bond verfication of space shuttle tiles

    NASA Astrophysics Data System (ADS)

    Moslehy, Faissal A.; Mueller, Steven A.; Davis, Richard M.

    1993-10-01

    This paper describes a novel application of a laser-based vibration measuring system and finite element modeling to evaluate the bond condition of Space Shuttle thermal protection system tiles. This application is based on characterizing the vibrational response of tiles when excited by an audible acoustic energy. Finite element models for tile assemblies which are comprised of tiles, SIP, and RTV layers attached to the Orbiter aluminum skin are first developed. The mathematical model considered the actual orthotropic material properties, different geometrical configurations as well as different bond conditions. The tiles' natural frequencies and mode shapes are then determined and their frequency responses due to simulated sound pressure are computed. The computed frequency response of a tile having a disbond indicates a decrease in its natural frequencies. This can be used to quickly identify the disbonded tiles. However, the exact size and location of the disbond are determined from the computed rigid- body vibrational modes. The finite element results are compared with experimentally determined frequency responses of a 17-tile test panel, where a rapid scan laser system was employed. An excellent degree of correlation between the mathematical simulation and experimental results is realized. The paper also reports on laser-based modal and shearographic testing performed on tiles of Space Shuttle Columbia. Again, the results demonstrate that experimental modal analysis, when combined with finite element modeling, can be successfully used as a reliable nondestructive, non-contact technique for tile bond verification.

  7. Using stable isotope tracers to assess flow pathways for P transport in tile-drained landscapes

    NASA Astrophysics Data System (ADS)

    Williams, M. R.; King, K.; Ford, W. I., III; Buda, A. R.; Kennedy, C. D.

    2015-12-01

    Throughout the Midwestern US and other poorly drained agricultural regions, phosphorus (P) transport in tile drainage is of increasing environmental concern. Significant P loads are often measured in subsurface drainage water despite the normally high P adsorption capacity of subsoils, which suggest that the high P loadings observed in tile drainage water during storm events are the result of P bypassing the soil matrix via macropore flow. The objectives of this study were to quantify event water delivery to tile drains via macropore flow paths during storm events and to determine the effect of tillage practices on event water and P delivery to tiles. Tile discharge, total dissolved P (DP) and total P (TP) concentrations, and stable oxygen and deuterium isotopic signatures were measured from two adjacent tile-drained fields in Ohio, USA during seven spring storms. Fertilizer was surface-applied to both fields and disk tillage was used to incorporate the fertilizer on one field while the other remained in no-till. Results showed that event water accounted for between 26 and 69% of total tile discharge from both fields, with tillage substantially reducing the maximum contributions of event water. Following fertilizer application, median DP concentration was significantly greater in the no-tilled fields (1.19 mg/L) compared to the tilled field (0.66 mg/L). Concentrations remained significantly greater in the no-tilled field compared to the tilled field for the five monitored storms (>1 month) after fertilizer application. Both DP and TP concentrations in the no-tilled fields were significantly related to event water contributions to tile discharge, while only TP concentration was significantly related to event water in the tilled field. Collectively, results suggest that macropore flow is an important flow pathway in tile-drained landscapes and that incorporating surface-applied fertilizers has the potential to substantially reduce the risk of P loss from tile

  8. Comparative Study on Synthesizing Reconfigurable Time- Modulated Linear Arrays using Differential Evolution, Artificial Bee Colony and Particle Swarm Optimization

    NASA Astrophysics Data System (ADS)

    Mandal, S. K.; Singh, Harshavardhan; Mahanti, G. K.; Ghatak, Rowdra

    2014-10-01

    This paper presents a new technique based on optimization tools to design phase only, digitally controlled, reconfigurable antenna arrays through time modulation. In the proposed approach, the on-time durations of the time-modulated elements and the static amplitudes of the array elements are perturbed in such a way that the same on-time sequence and discrete values of static amplitudes for four bit digital attenuators produces either a pencil or a flat-top beam pattern, depending on the suitable discrete phase distributions of five bit digital phase shifters. In order to illustrate the technique, three optimization tools: differential evolution (DE), artificial bee colony (ABC), and particle swarm optimization (PSO) are employed and their performances are compared. The numerical results for a 20-element linear array are presented.

  9. Optimizing Tile Concentrations to Minimize Errors and Time for DNA Tile Self-assembly Systems

    NASA Astrophysics Data System (ADS)

    Chen, Ho-Lin; Kao, Ming-Yang

    DNA tile self-assembly has emerged as a rich and promising primitive for nano-technology. This paper studies the problems of minimizing assembly time and error rate by changing the tile concentrations because changing the tile concentrations is easy to implement in actual lab experiments. We prove that setting the concentration of tile T i proportional to the square root of N i where N i is the number of times T i appears outside the seed structure in the final assembled shape minimizes the rate of growth errors for rectilinear tile systems. We also show that the same concentrations minimize the expected assembly time for a feasible class of tile systems. Moreover, for general tile systems, given tile concentrations, we can approximate the expected assembly time with high accuracy and probability by running only a polynomial number of simulations in the size of the target shape.

  10. Fast Glazing of Alumina/Silica Tiles

    NASA Technical Reports Server (NTRS)

    Creedon, J. F.; Gzowski, E. R.; Wheeler, W. H.

    1986-01-01

    Technique for applying ceramic coating to fibrous silica/alumina insulation tiles prevents cracks and substantially reduces firing time. To reduce thermal stresses in tile being coated, high-temperature, shorttime firing schedule implemented. Such schedule allows coating to mature while substrate remains at relatively low temperature, reducing stress differential between coating and substrate. Technique used to repair tiles with damaged coatings and possibly used in heat-treating objects made of materials having different thermal-expansion coefficients.

  11. Positive feedback fishery: Population consequences of `crab-tiling' on the green crab Carcinus maenas

    NASA Astrophysics Data System (ADS)

    Sheehan, E. V.; Thompson, R. C.; Coleman, R. A.; Attrill, M. J.

    2008-11-01

    Collection of marine invertebrates for use as fishing bait is a substantial activity in many parts of the world, often with unknown ecological consequences. As new fisheries develop, it is critical for environmental managers to have high quality ecological information regarding the potential impacts, in order to develop sound management strategies. Crab-tiling is a largely unregulated and un-researched fishery, which operates commercially in the south-west UK. The target species is the green crab Carcinus maenas. Those crabs which are pre-ecdysis and have a carapace width greater than 40 mm are collected to be sold to recreational anglers as bait. Collection involves laying artificial structures on intertidal sandflats and mudflats in estuaries. Crabs use these structures as refugia and are collected during low tide. However, the effect that this fishery has on populations of C. maenas is not known. The impact of crab-tiling on C. maenas population structure was determined by sampling crabs from tiled estuaries and non-tiled estuaries using baited drop-nets. A spatially and temporarily replicated, balanced design was used to compare crab abundance, sizes and sex ratios between estuaries. Typically, fisheries are associated with a reduction in the abundance of the target species. Crab-tiling, however, significantly increased C. maenas abundance. This was thought to be a result of the extra habitat in tiled estuaries, which probably provides protection from natural predators, such as birds and fish. Although crabs were more abundant in tiled estuaries than non-tiled estuaries, the overall percentage of reproductively active crabs in non-tiled estuaries was greater than in tiled estuaries. As with most exploited fisheries stocks, crabs in exploited (tiled) estuaries tended to be smaller, with a modal carapace width of 20-29 mm rather than 30-39 mm in non-tiled estuaries. The sex ratio of crabs however; was not significantly different between tiled and non-tiled

  12. A novel surface defect inspection algorithm for magnetic tile

    NASA Astrophysics Data System (ADS)

    Xie, Luofeng; Lin, Lijun; Yin, Ming; Meng, Lintao; Yin, Guofu

    2016-07-01

    In this paper, we propose a defect extraction method for magnetic tile images based on the shearlet transform. The shearlet transform is a method of multi-scale geometric analysis. Compared with similar methods, the shearlet transform offers higher directional sensitivity and this is useful to accurately extract geometric characteristics from data. In general, a magnetic tile image captured by CCD camera mainly consists of target area, background. Our strategy for extracting the surface defects of magnetic tile comprises two steps: image preprocessing and defect extraction. Both steps are critical. After preprocessing the image, we extract the target area. Due to the low contrast in the magnetic tile image, we apply the discrete shearlet transform to enhance the contrast between the defect area and the normal area. Next, we apply a threshold method to generate a binary image. To validate our algorithm, we compare our experimental results with Otsu method, the curvelet transform and the nonsubsampled contourlet transform. Results show that our algorithm outperforms the other methods considered and can very effectively extract defects.

  13. Topology-aware Tile Mapping for Clusters of SMPs

    SciTech Connect

    Chavarría-Miranda, Daniel; Nieplocha, Jarek; Tipparaju, Vinod

    2006-05-01

    We propose a technique to optimize the performance of applications using distributed dense arrays and characterized by a nearest-neighbor communication profile by exploiting the topology of SMP clusters. The topological information is exploited for mapping array tiles to processors to reduce the network communication and improve utilization of shared memory for inter-process communication. The potential benefits of using the SMP-aware mapping are demonstrated through a simulation, as well as a real application solving a wind-driven ocean circulation model on an IBM SP. On 128 processors, the execution time was reduced by almost 20 percent without any changes to the original application source code. The proposed mapping approach is applicable to multiple programming models and distributed array management systems.

  14. C∗-algebras of Penrose hyperbolic tilings

    NASA Astrophysics Data System (ADS)

    Oyono-Oyono, Hervé; Petite, Samuel

    2011-02-01

    Penrose hyperbolic tilings are tilings of the hyperbolic plane which admit, up to affine transformations a finite number of prototiles. In this paper, we give a complete description of the C∗-algebras and of the K-theory for such tilings. Since the continuous hull of these tilings have no transversally invariant measure, these C∗-algebras are traceless. Nevertheless, harmonic currents give rise to 3-cyclic cocycles and we discuss in this setting a higher-order version of the gap-labeling.

  15. Global Swath and Gridded Data Tiling

    NASA Technical Reports Server (NTRS)

    Thompson, Charles K.

    2012-01-01

    This software generates cylindrically projected tiles of swath-based or gridded satellite data for the purpose of dynamically generating high-resolution global images covering various time periods, scaling ranges, and colors called "tiles." It reconstructs a global image given a set of tiles covering a particular time range, scaling values, and a color table. The program is configurable in terms of tile size, spatial resolution, format of input data, location of input data (local or distributed), number of processes run in parallel, and data conditioning.

  16. Multilayer Impregnated Fibrous Thermal Insulation Tiles

    NASA Technical Reports Server (NTRS)

    Tran, Huy K.; Rasky, Daniel J.; Szalai, Christine e.; Hsu, Ming-ta; Carroll, Joseph A.

    2007-01-01

    The term "secondary polymer layered impregnated tile" ("SPLIT") denotes a type of ablative composite-material thermal- insulation tiles having engineered, spatially non-uniform compositions. The term "secondary" refers to the fact that each tile contains at least two polymer layers wherein endothermic reactions absorb considerable amounts of heat, thereby helping to prevent overheating of an underlying structure. These tiles were invented to afford lighter-weight alternatives to the reusable thermal-insulation materials heretofore variously used or considered for use in protecting the space shuttles and other spacecraft from intense atmospheric-entry heating.

  17. COMPARING THE ENERGY SPECTRA OF ULTRAHIGH ENERGY COSMIC RAYS MEASURED WITH EXTENSIVE AIR SHOWER ARRAYS

    SciTech Connect

    Ivanov, A. A.

    2010-03-20

    The energy spectra of ultrahigh energy cosmic rays (CRs) measured with giant extensive air shower (EAS) arrays exhibit discrepancies between the flux intensities and/or estimated CR energies exceeding experimental errors. The well-known intensity correction factor due to the dispersion of the measured quantity in the presence of a rapidly falling energy spectrum is insufficient to explain the divergence. Another source of systematic energy determination error is proposed concerning the charged particle density measured with the surface arrays, which arises due to simplifications (namely, the superposition approximation) in nucleus-nucleus interaction description applied to the shower modeling. Making use of the essential correction factors results in congruous CR energy spectra within experimental errors. Residual differences in the energy scales of giant arrays can be attributed to the actual overall accuracy of the EAS detection technique used. CR acceleration and propagation model simulations using the dip and ankle scenarios of the transition from galactic to extragalactic CR components are in agreement with the combined energy spectrum observed with EAS arrays.

  18. 2D capacitive micromachined ultrasound transducer using novel tiling based on silicon frame

    NASA Astrophysics Data System (ADS)

    Kim, Youngil; Cho, Kyungil; Kim, Baehyung; Lee, Seungheun; Jeon, Taeho; Song, Jongkeun

    2013-03-01

    In this study, we showed the new transducer and probe integration of 2D ultrasound probe using cMUT. cMUT ultrasound probe having 8192 elements is assembled with tiling frame. Flip chip bonded cMUT-ASIC tiles were arrayed along 2×8 directions to enlarge lateral aperture. Tiling gap between two tiles was under 100μm. RTV layer that has 1mm thick is used in 2-D probe system as a lens and protection layer. Thermal module is also analyzed by using the thermal network analysis, which is realized with the air fans and the fins. Designed PCB circuit for tiling module which is considered with cooling spread concept is 5cm × 5cm dimension. Uniformity and performance of tiled ultrasound transducer were tested under soybean oil at 3MHz frequency successfully. The measured 256 elements distribution has only 4.45% deviation. If we can remove the side edge error, the deviation will be under 3%. The performance after RTV lensing showed 35% attenuation in Tx and 35~45% attenuation in Rx.

  19. Effects of thermal blooming on systems comprised of tiled subapertures

    NASA Astrophysics Data System (ADS)

    Leakeas, Charles L.; Bartell, Richard J.; Krizo, Matthew J.; Fiorino, Steven T.; Cusumano, Salvatore J.; Whiteley, Matthew R.

    2010-04-01

    Laser weapon systems comprise of tiled subapertures are rapidly emerging in the directed energy community. The Air Force Institute of Technology Center for Directed Energy (AFIT/CDE), under sponsorship of the HEL Joint Technology Office has developed performance models of such laser weapon system configurations consisting of tiled arrays of both slab and fiber subapertures. These performance models are based on results of detailed waveoptics analyses conducted using WaveTrain. Previous performance model versions developed in this effort represent system characteristics such as subaperture shape, aperture fill factor, subaperture intensity profile, subaperture placement in the primary aperture, subaperture mutual coherence (piston), subaperture differential jitter (tilt), and beam quality wave-front error associated with each subaperture. The current work is a prerequisite for the development of robust performance models for turbulence and thermal blooming effects for tiled systems. Emphasis is placed on low altitude tactical scenarios. The enhanced performance model developed will be added to AFIT/CDE's HELEEOS parametric one-on-one engagement level model via the Scaling for High Energy Laser and Relay Engagement (SHaRE) toolbox.

  20. Parametric Multi-Level Tiling of Imperfectly Nested Loops

    SciTech Connect

    Hartono, Albert; Baskaran, Muthu M.; Bastoul, Cedric; Cohen, Albert; Krishnamoorthy, Sriram; Norris, Boyana; Ramanujam, J.; Sadayappan, Ponnuswamy

    2009-05-18

    Tiling is a critical loop transformation for generating high-performance code on modern architectures. Efficient generation of multilevel tiled code is essential to exploit several levels of parallelism and/or to maximize data reuse in deep memory hierarchies. Tiled loops with parameterized tile sizes (not compile time constants) facilitate runtime feedback and dynamic optimizations used in iterative compilation and automatic tuning. The existing parametric multilevel tiling approach has focused on transformation for perfectly nested loops, where all assignment statements are contained inside the innermost loop of a loop nest. Previous solutions to tiling for imperfect loop nests are limited to the case where tile sizes are fixed. In this paper, we present an approach to parameterized multilevel tiling for imperfectly nested loops. Our tiling algorithm generates loops that iterate over full rectangular tiles that are amenable for potential compiler optimizations such as register tiling. Experimental results using a number of computational benchmarks demonstrate the effectiveness of our tiling approach.

  1. Thermal Characterization of TPS Tiles

    SciTech Connect

    Kacmar, C. J.; LaCivita, K. J.; Jata, K. V.; Sathish, S.

    2006-03-06

    The Thermal Protection System (TPS) used on space shuttles protects the metallic structure from the large amounts of heat created during travel through the atmosphere, both on takeoff and reentry. The shuttle experiences high thermo-acoustic loading and impact damage from micro-meteorites, which can cause disbonds, delaminations, chips, cracks, and other defects to the TPS system. To enhance durability and damage tolerance, new TPS tiles with an added protective ceramic-matrix-composite layer are being developed. This paper explores the use of pulsed thermography as a quick, diverse, non-destructive technique, to characterize the TPS system. The pulsed thermography images obtained are presented and analyzed.

  2. Tiled fuzzy Hough transform for crack detection

    NASA Astrophysics Data System (ADS)

    Vaheesan, Kanapathippillai; Chandrakumar, Chanjief; Mathavan, Senthan; Kamal, Khurram; Rahman, Mujib; Al-Habaibeh, Amin

    2015-04-01

    Surface cracks can be the bellwether of the failure of any component under loading as it indicates the component's fracture due to stresses and usage. For this reason, crack detection is indispensable for the condition monitoring and quality control of road surfaces. Pavement images have high levels of intensity variation and texture content, hence the crack detection is difficult. Moreover, shallow cracks result in very low contrast image pixels making their detection difficult. For these reasons, studies on pavement crack detection is active even after years of research. In this paper, the fuzzy Hough transform is employed, for the first time to detect cracks on any surface. The contribution of texture pixels to the accumulator array is reduced by using the tiled version of the Hough transform. Precision values of 78% and a recall of 72% are obtaining for an image set obtained from an industrial imaging system containing very low contrast cracking. When only high contrast crack segments are considered the values move to mid to high 90%.

  3. Array Comparative Genomic Hybridization in Ulcerative Colitis Neoplasia: Single Non-Dysplastic Biopsies Distinguish Progressors from Non-Progressors

    PubMed Central

    Bronner, Mary P.; Skacel, Marek; Crispin, David A.; Hoff, Peter D.; Emond, Mary J.; Lai, Lisa A.; Tubbs, Raymond R.; Rabinovitch, Peter S.; Brentnall, Teresa A.

    2010-01-01

    Approximately 10% of ulcerative colitis patients develop colorectal neoplasia. At present, identification of this subset is markedly limited and necessitates lifelong colonoscopic surveillance for the entire ulcerative colitis population. Better risk markers are needed to focus surveillance onto the patients most likely to benefit. Using array-based comparative genomic hybridization, we analyzed single, non-dysplastic biopsies from three patient groups: ulcerative colitis progressors (n=9) with cancer or high-grade dysplasia at a mean distance of 18 cm from the analyzed site; ulcerative colitis nonprogressors (n=8) without dysplasia during long-term surveillance; and non-ulcerative colitis normal controls (n=2). Genomic DNA from fresh colonic epithelium purified from stroma was hybridized to 287 (low-density) and 4,342 (higher-density) feature bacterial artificial chromosome arrays. Sample-to-reference fluorescence ratios were calculated for individual chromosomal targets and globally across the genome. The low-density arrays yielded pronounced genomic gains and losses in 3 of 9 (33%) ulcerative colitis progressors but in none of the 10 control patients. Identical DNA samples analyzed on the higher density arrays, using a combination of global and individual high variance assessments, distinguished all 9 progressors from all 10 controls. These data confirm that genomic alterations in ulcerative colitis progressors are widespread, even involving single non-dysplastic biopsies far distant from neoplasia. They therefore show promise toward eliminating full colonoscopic surveillance with extensive biopsy sampling in the majority of ulcerative colitis patients. PMID:20802465

  4. Clinical Utility of Array Comparative Genomic Hybridization for Detection of Chromosomal Abnormalities in Pediatric Acute Lymphoblastic Leukemia

    PubMed Central

    Rabin, Karen R.; Man, Tsz-Kwong; Yu, Alexander; Folsom, Matthew R.; Zhao, Yi-Jue; Rao, Pulivarthi H.; Plon, Sharon E.; Naeem, Rizwan C.

    2014-01-01

    Background Accurate detection of recurrent chromosomal abnormalities is critical to assign patients to risk-based therapeutic regimens for pediatric acute lymphoblastic leukemia (ALL). Procedure We investigated the utility of array comparative genomic hybridization (aCGH) for detection of chromosomal abnormalities compared to standard clinical evaluation with karyotype and fluorescent in-situ hybridization (FISH). Fifty pediatric ALL diagnostic bone marrows were analyzed by bacterial artificial chromosome (BAC) array, and findings compared to standard clinical evaluation. Results Sensitivity of aCGH was 79% to detect karyotypic findings other than balanced translocations, which cannot be detected by aCGH because they involve no copy number change. aCGH also missed abnormalities occurring in subclones constituting less than 25% of cells. aCGH detected 44 additional abnormalities undetected or misidentified by karyotype, 21 subsequently validated by FISH, including abnormalities in 4 of 10 cases with uninformative cytogenetics. aCGH detected concurrent terminal deletions of both 9p and 20q in three cases, in two of which the 20q deletion was undetected by karyotype. A narrow region of loss at 7p21 was detected in two cases. Conclusions An array with increased BAC density over regions important in ALL, combined with PCR for fusion products of balanced translocations, could minimize labor- and time-intensive cytogenetic assays and provide key prognostic information in the approximately 35% of cases with uninformative cytogenetics. PMID:18253961

  5. Shaving Ceramic Tiles To Final Dimensions

    NASA Technical Reports Server (NTRS)

    Shaw, Ernest

    1992-01-01

    Combination of template and routing tool cuts ceramic tiles to final dimensions. Template guides router along precisely defined planes to accurately and uniformly shave chamfers on edge of tiles. Legs of template temporarily bonded to workpiece by double-backed adhesive tape. Adaptable to in-situ final machining of other nominally flat, narrow surfaces.

  6. Bonding Heat-Resistant Fabric to Tile

    NASA Technical Reports Server (NTRS)

    Holt, J. W.; Smiser, L. W.

    1985-01-01

    Acid etching, densification, and silica cement ensure strong bond. Key step in preparation for bonding to glazed tile is etching quartz fabric and tile with acid. This increases adhesion of silica cement used to form bond. Procedures use high-temperature materials exclusively and therefore suitable for securing flexible seals and heat barriers around doors and viewing ports in furnaces and kilns.

  7. Wind-Resistant Filler for Tile Gaps

    NASA Technical Reports Server (NTRS)

    Bellavia, J.; Quigley, I. A.; Callahan, T. S.

    1982-01-01

    Filler developed for gaps between insulating tiles on Space Shuttle finds application in industries that use tiles for thermal or environmental protection. Filler consists of tight-fitting ceramic tubes and fibrous alumina. Combination resists high wind loads while providing requisite heat protection. Quartz-thread stitching holds envelope together.

  8. The Sad Case of the Columbine Tiles.

    ERIC Educational Resources Information Center

    Dowling-Sendor, Benjamin

    2003-01-01

    Analyzes free-speech challenge to school district's guidelines for acceptable expressions on ceramic tiles painted by Columbine High School students to express their feelings about the massacre. Tenth Circuit found that tile painting constituted school-sponsored speech and thus district had the constitutional authority under "Hazelwood School…

  9. Performance of the Tile PreProcessor Demonstrator for the ATLAS Tile Calorimeter Phase II Upgrade

    NASA Astrophysics Data System (ADS)

    Carrió, F.; Moreno, P.; Valero, A.

    2016-03-01

    The Tile Calorimeter PreProcessor demonstrator is a high performance double AMC board based on FPGA resources and QSFP modules. This board has been designed in the framework of the ATLAS Tile Calorimeter Demonstrator project for the Phase II Upgrade as the first stage of the back-end electronics. The TilePPr demonstrator has been conceived to receive and process the data coming from the front-end electronics of the TileCal Demonstrator module, as well as to configure it. Moreover, the TilePPr demonstrator handles the communication with the Detector Control System to monitor and control the front-end electronics. The TilePPr demonstrator represents 1/8 of the final TilePPr that will be designed and installed into the detector for the ATLAS Phase II Upgrade.

  10. Consistency and derangements in brane tilings

    NASA Astrophysics Data System (ADS)

    Hanany, Amihay; Jejjala, Vishnu; Ramgoolam, Sanjaye; Seong, Rak-Kyeong

    2016-09-01

    Brane tilings describe Lagrangians (vector multiplets, chiral multiplets, and the superpotential) of four-dimensional { N }=1 supersymmetric gauge theories. These theories, written in terms of a bipartite graph on a torus, correspond to worldvolume theories on N D3-branes probing a toric Calabi–Yau threefold singularity. A pair of permutations compactly encapsulates the data necessary to specify a brane tiling. We show that geometric consistency for brane tilings, which ensures that the corresponding quantum field theories are well behaved, imposes constraints on the pair of permutations, restricting certain products constructed from the pair to have no one-cycles. Permutations without one-cycles are known as derangements. We illustrate this formulation of consistency with known brane tilings. Counting formulas for consistent brane tilings with an arbitrary number of chiral bifundamental fields are written down in terms of delta functions over symmetric groups.

  11. Measuring phased-array antenna beampatterns with high dynamic range for the Murchison Widefield Array using 137 MHz ORBCOMM satellites

    NASA Astrophysics Data System (ADS)

    Neben, A. R.; Bradley, R. F.; Hewitt, J. N.; Bernardi, G.; Bowman, J. D.; Briggs, F.; Cappallo, R. J.; Deshpande, A. A.; Goeke, R.; Greenhill, L. J.; Hazelton, B. J.; Johnston-Hollitt, M.; Kaplan, D. L.; Lonsdale, C. J.; McWhirter, S. R.; Mitchell, D. A.; Morales, M. F.; Morgan, E.; Oberoi, D.; Ord, S. M.; Prabu, T.; Shankar, N. Udaya; Srivani, K. S.; Subrahmanyan, R.; Tingay, S. J.; Wayth, R. B.; Webster, R. L.; Williams, A.; Williams, C. L.

    2015-07-01

    Detection of the fluctuations in a 21 cm line emission from neutral hydrogen during the Epoch of Reionization in thousand hour integrations poses stringent requirements on calibration and image quality, both of which necessitate accurate primary beam models. The Murchison Widefield Array (MWA) uses phased-array antenna elements which maximize collecting area at the cost of complexity. To quantify their performance, we have developed a novel beam measurement system using the 137 MHz ORBCOMM satellite constellation and a reference dipole antenna. Using power ratio measurements, we measure the in situ beampattern of the MWA antenna tile relative to that of the reference antenna, canceling the variation of satellite flux or polarization with time. We employ angular averaging to mitigate multipath effects (ground scattering) and assess environmental systematics with a null experiment in which the MWA tile is replaced with a second-reference dipole. We achieve beam measurements over 30 dB dynamic range in beam sensitivity over a large field of view (65% of the visible sky), far wider and deeper than drift scans through astronomical sources allow. We verify an analytic model of the MWA tile at this frequency within a few percent statistical scatter within the full width at half maximum. Toward the edges of the main lobe and in the sidelobes, we measure tens of percent systematic deviations. We compare these errors with those expected from known beamforming errors.

  12. Penrose Tilings as Jammed Solids

    NASA Astrophysics Data System (ADS)

    Stenull, Olaf; Lubensky, T. C.

    2014-10-01

    Penrose tilings form lattices, exhibiting fivefold symmetry and isotropic elasticity, with inhomogeneous coordination much like that of the force networks in jammed systems. Under periodic boundary conditions, their average coordination is exactly four. We study the elastic and vibrational properties of rational approximants to these lattices as a function of unit-cell size NS and find that they have of order √NS zero modes and states of self-stress and yet all their elastic moduli vanish. In their generic form, obtained by randomizing site positions, their elastic and vibrational properties are similar to those of particulate systems at jamming with a nonzero bulk modulus, vanishing shear modulus, and a flat density of states.

  13. On the structure of quadrilateral brane tilings

    NASA Astrophysics Data System (ADS)

    de Medeiros, Paul

    2012-01-01

    Brane tilings provide the most general framework in string and M-theory for matching toric Calabi-Yau singularities probed by branes with superconformal fixed points of quiver gauge theories. The brane tiling data consists of a bipartite tiling of the torus which encodes both the classical superpotential and gauge-matter couplings for the quiver gauge theory. We consider the class of tilings which contain only tiles bounded by exactly four edges and present a method for generating any tiling within this class by iterating combinations of certain graph-theoretic moves. In the context of D3-branes in IIB string theory, we consider the effect of these generating moves within the corresponding class of supersymmetric quiver gauge theories in four dimensions. Of particular interest are their effect on the superpotential, the vacuum moduli space and the conditions necessary for the theory to reach a superconformal fixed point in the infrared. We discuss the general structure of physically admissible quadrilateral brane tilings and Seiberg duality in terms of certain composite moves within this class.

  14. Fibrous-Ceramic/Aerogel Composite Insulating Tiles

    NASA Technical Reports Server (NTRS)

    White, Susan M.; Rasky, Daniel J.

    2004-01-01

    Fibrous-ceramic/aerogel composite tiles have been invented to afford combinations of thermal-insulation and mechanical properties superior to those attainable by making tiles of fibrous ceramics alone or aerogels alone. These lightweight tiles can be tailored to a variety of applications that range from insulating cryogenic tanks to protecting spacecraft against re-entry heating. The advantages and disadvantages of fibrous ceramics and aerogels can be summarized as follows: Tiles made of ceramic fibers are known for mechanical strength, toughness, and machinability. Fibrous ceramic tiles are highly effective as thermal insulators in a vacuum. However, undesirably, the porosity of these materials makes them permeable by gases, so that in the presence of air or other gases, convection and gas-phase conduction contribute to the effective thermal conductivity of the tiles. Other disadvantages of the porosity and permeability of fibrous ceramic tiles arise because gases (e.g., water vapor or cryogenic gases) can condense in pores. This condensation contributes to weight, and in the case of cryogenic systems, the heat of condensation undesirably adds to the heat flowing to the objects that one seeks to keep cold. Moreover, there is a risk of explosion associated with vaporization of previously condensed gas upon reheating. Aerogels offer low permeability, low density, and low thermal conductivity, but are mechanically fragile. The basic idea of the present invention is to exploit the best features of fibrous ceramic tiles and aerogels. In a composite tile according to the invention, the fibrous ceramic serves as a matrix that mechanically supports the aerogel, while the aerogel serves as a low-conductivity, low-permeability filling that closes what would otherwise be the open pores of the fibrous ceramic. Because the aerogel eliminates or at least suppresses permeation by gas, gas-phase conduction, and convection, the thermal conductivity of such a composite even at

  15. Seamless stitching of tile scan microscope images.

    PubMed

    Legesse, F B; Chernavskaia, O; Heuke, S; Bocklitz, T; Meyer, T; Popp, J; Heintzmann, R

    2015-06-01

    For diagnostic purposes, optical imaging techniques need to obtain high-resolution images of extended biological specimens in reasonable time. The field of view of an objective lens, however, is often smaller than the sample size. To image the whole sample, laser scanning microscopes acquire tile scans that are stitched into larger mosaics. The appearance of such image mosaics is affected by visible edge artefacts that arise from various optical aberrations which manifest in grey level jumps across tile boundaries. In this contribution, a technique for stitching tiles into a seamless mosaic is presented. The stitching algorithm operates by equilibrating neighbouring edges and forcing the brightness at corners to a common value. The corrected image mosaics appear to be free from stitching artefacts and are, therefore, suited for further image analysis procedures. The contribution presents a novel method to seamlessly stitch tiles captured by a laser scanning microscope into a large mosaic. The motivation for the work is the failure of currently existing methods for stitching nonlinear, multimodal images captured by our microscopic setups. Our method eliminates the visible edge artefacts that appear between neighbouring tiles by taking into account the overall illumination differences among tiles in such mosaics. The algorithm first corrects the nonuniform brightness that exists within each of the tiles. It then compensates for grey level differences across tile boundaries by equilibrating neighbouring edges and forcing the brightness at the corners to a common value. After these artefacts have been removed further image analysis procedures can be applied on the microscopic images. Even though the solution presented here is tailored for the aforementioned specific case, it could be easily adapted to other contexts where image tiles are assembled into mosaics such as in astronomical or satellite photos. PMID:25787148

  16. Validation of the Agilent 244K oligonucleotide array-based comparative genomic hybridization platform for clinical cytogenetic diagnosis.

    PubMed

    Yu, Shihui; Bittel, Douglas C; Kibiryeva, Nataliya; Zwick, David L; Cooley, Linda D

    2009-09-01

    High-resolution microarray comparative genomic hybridization (aCGH) is being adopted for diagnostic evaluation of genomic disorders, but validation for clinical diagnosis has not yet been reported. We present validation data for the Agilent Human Genome Microarray Kit 244K for clinical application. The platform contains approximately 240,000 distinct 60-mer oligonucleotide probes spanning the entire human genome. We studied 45 previously characterized samples (43 abnormal, 2 normal), 32 with knowledge of prior results and 13 in a blinded manner with 11 performed in a reference laboratory providing microarray testing. Array analysis confirmed known aberrations in 43 samples and a normal result in 2. The array analysis corrected 1 karyotype and clarified 2 additional cases. Array data from 6 patients with 22q11.2 deletion found an average of 2.56 megabases (Mb; range, 2.49-2.62 Mb) with a common 2.43-Mb deleted region. Approximately 7 copy number variants from 400 base pairs to 1.6 Mb were identified per sample. Results demonstrate the usefulness of the aCGH-244K platform as a powerful diagnostic tool. PMID:19687311

  17. Characterization of genomic alterations in radiation-associated breast cancer among childhood cancer survivors, using comparative genomic hybridization (CGH) arrays.

    PubMed

    Yang, Xiaohong R; Killian, J Keith; Hammond, Sue; Burke, Laura S; Bennett, Hunter; Wang, Yonghong; Davis, Sean R; Strong, Louise C; Neglia, Joseph; Stovall, Marilyn; Weathers, Rita E; Robison, Leslie L; Bhatia, Smita; Mabuchi, Kiyohiko; Inskip, Peter D; Meltzer, Paul

    2015-01-01

    Ionizing radiation is an established risk factor for breast cancer. Epidemiologic studies of radiation-exposed cohorts have been primarily descriptive; molecular events responsible for the development of radiation-associated breast cancer have not been elucidated. In this study, we used array comparative genomic hybridization (array-CGH) to characterize genome-wide copy number changes in breast tumors collected in the Childhood Cancer Survivor Study (CCSS). Array-CGH data were obtained from 32 cases who developed a second primary breast cancer following chest irradiation at early ages for the treatment of their first cancers, mostly Hodgkin lymphoma. The majority of these cases developed breast cancer before age 45 (91%, n = 29), had invasive ductal tumors (81%, n = 26), estrogen receptor (ER)-positive staining (68%, n = 19 out of 28), and high proliferation as indicated by high Ki-67 staining (77%, n = 17 out of 22). Genomic regions with low-copy number gains and losses and high-level amplifications were similar to what has been reported in sporadic breast tumors, however, the frequency of amplifications of the 17q12 region containing human epidermal growth factor receptor 2 (HER2) was much higher among CCSS cases (38%, n = 12). Our findings suggest that second primary breast cancers in CCSS were enriched for an "amplifier" genomic subgroup with highly proliferative breast tumors. Future investigation in a larger irradiated cohort will be needed to confirm our findings. PMID:25764003

  18. Aerogel: Tile Composites Toughen a Brittle Superinsulation

    NASA Technical Reports Server (NTRS)

    White, Susan; Rasky, Daniel; Arnold, James O. (Technical Monitor)

    1998-01-01

    Pure aerogels, though familiar in the laboratory for decades as exotic lightweight insulators with unusual physical properties, have had limited industrial applications due to their low strength and high brittleness. Composites formed of aerogels and the ceramic fiber matrices like those used as space shuttle tiles bypass the fragility of pure aerogels and can enhance the performance of space shuttle tiles in their harsh operating environment. Using a layer of aerogel embedded in a tile may open up a wide range of applications where thermal insulation, gas convection control and mechanical strength matter.

  19. The TileCal Laser Calibration System

    NASA Astrophysics Data System (ADS)

    Giangiobbe, Vincent; On Behalf Of The Atlas Tile Calorimeter Group

    TileCal is the central hadronic calorimeter of the ATLAS detector operating at LHC. It is a sampling calorimeter whose active material is made of scintillating plastic tiles. Scintillation light is read by photomultipliers. A Laser system is used to monitor their gain stability. During dedicated calibration runs the Laser system sends via long optical fibers, a monitored amount of light simultaneously to all the ≈10000 photomultipliers of TileCal. This note describes two complementary methods to measure the stability of the photomultipliers gain using the Laser calibration runs. The results of validation tests are presented for both methods and theirrespective performances and limitations are discussed.

  20. Remotely replaceable tokamak plasma limiter tiles

    DOEpatents

    Gallix, R.

    1987-12-09

    U-shaped tiles placed end-to-end over a pair of parallel runners have two rods which engage L-shaped slots. A sliding bar between the runners has grooves with clips to retain the rods pressed into receiving legs of the L-shaped slots in the runners. Sliding the bar in the direction of retaining legs of the L-shaped slots latches the tiles in place over the wall. Resilient contact strips under the parallel sides of the U-shaped tile assure thermal and electrical contact with the wall. 6 figs.

  1. The challenging scales of the bird: Shuttle tile structural integrity

    NASA Technical Reports Server (NTRS)

    Schneider, W. C.; Miller, G. J.

    1985-01-01

    The principal design issues, tests, and analyses required to solve the tile integrity problem on the space shuttle orbiters are addressed. Proof testing of installed tiles is discussed along with an airflow test of special tiles. Orbiter windshield tiles are considered in terms of changes necessary to ensure acceptable margins of safety for flight.

  2. A Comparative Analysis for Verification of IMRT and VMAT Treatment Plans using a 2-D and 3-D Diode Array

    NASA Astrophysics Data System (ADS)

    Dance, Michael J.

    With the added complexity of current radiation treatment dose delivery modalities such as IMRT (Intensity Modulated Radiation Therapy) and VMAT (Volumetric Modulated Arc Therapy), quality assurance (QA) of these plans become multifaceted and labor intensive. To simplify the patient specific quality assurance process, 2D or 3D diode arrays are used to measure the radiation fluence for IMRT and VMAT treatments which can then be quickly and easily compared against the planned dose distribution. Because the arrays that can be used for IMRT and VMAT patient-specific quality assurance are of different geometry (planar vs. cylindrical), the same IMRT or VMAT treatment plan measured by two different arrays could lead to different measured radiation fluences, regardless of the output and performance of linear accelerator. Thus, the purpose of this study is to compare patient specific QA results as measured by the MapCHECK 2 and ArcCHECK diode arrays for the same IMRT and VMAT treatment plans to see if one diode array consistently provides a closer comparison to reference data. Six prostate and three thoracic spine IMRT treatment plans as well as three prostate and three thoracic spine VMAT treatment plans were produced. Radiotherapy plans for this study were generated using the Pinnacle TPS v9.6 (Philips Radiation Oncology Systems, Fitchburg, WI) using 6 MV, 6 MV FFF, and 10 MV x-ray beams from a Varian TrueBeam linear accelerator (Varian Medical Systems, Palo Alto, CA) with a 120-millenium multi-leaf collimator (MLC). Each IMRT and VMAT therapy plan was measured on Sun Nuclear's MapCHECK 2 and ArcCHECK diode arrays. IMRT measured data was compared with planned dose distribution using Sun Nuclear's 3DVH quality assurance software program using gamma analysis and dose-volume histograms for target volumes and critical structures comparison. VMAT arc plans measured on the MapCHECK 2 and ArcCHECK were compared using beam-by-beam analysis with the gamma evaluation method with

  3. High-Strength, Low-Shrinkage Ceramic Tiles

    NASA Technical Reports Server (NTRS)

    Wheeler, W. H.; Creedon, J. F.

    1986-01-01

    Addition of refractory fibers and whiskers to insulating tiles composed primarily of fibrous silica, such as those used on the skin of Space Shuttle orbiter, greatly improves properties. New composition suitable for lightweight, thermally-stable mirror blanks and as furnace and kiln insulation. Improved tiles made with current tile-fabrication processes. For given density, tiles containing silicon carbide and boron additives stronger in flexure than tiles made from silica alone. In addition, tiles with additives nearly immune to heat distortion, whereas pure-silica tiles shrink and become severely distorted.

  4. Heat Transfer Measurement and Modeling in Rigid High-Temperature Reusable Surface Insulation Tiles

    NASA Technical Reports Server (NTRS)

    Daryabeigi, Kamran; Knutson, Jeffrey R.; Cunnington, George R.

    2011-01-01

    Heat transfer in rigid reusable surface insulations was investigated. Steady-state thermal conductivity measurements in a vacuum were used to determine the combined contribution of radiation and solid conduction components of heat transfer. Thermal conductivity measurements at higher pressures were then used to estimate the effective insulation characteristic length for gas conduction modeling. The thermal conductivity of the insulation can then be estimated at any temperature and pressure in any gaseous media. The methodology was validated by comparing estimated thermal conductivities with published data on a rigid high-temperature silica reusable surface insulation tile. The methodology was also applied to the alumina enhanced thermal barrier tiles. Thermal contact resistance for thermal conductivity measurements on rigid tiles was also investigated. A technique was developed to effectively eliminate thermal contact resistance on the rigid tile s cold-side surface for the thermal conductivity measurements.

  5. Directed enzymatic activation of 1-D DNA tiles.

    PubMed

    Garg, Sudhanshu; Chandran, Harish; Gopalkrishnan, Nikhil; LaBean, Thomas H; Reif, John

    2015-02-24

    The tile assembly model is a Turing universal model of self-assembly where a set of square shaped tiles with programmable sticky sides undergo coordinated self-assembly to form arbitrary shapes, thereby computing arbitrary functions. Activatable tiles are a theoretical extension to the Tile assembly model that enhances its robustness by protecting the sticky sides of tiles until a tile is partially incorporated into a growing assembly. In this article, we experimentally demonstrate a simplified version of the Activatable tile assembly model. In particular, we demonstrate the simultaneous assembly of protected DNA tiles where a set of inert tiles are activated via a DNA polymerase to undergo linear assembly. We then demonstrate stepwise activated assembly where a set of inert tiles are activated sequentially one after another as a result of attachment to a growing 1-D assembly. We hope that these results will pave the way for more sophisticated demonstrations of activated assemblies. PMID:25625898

  6. A family of ternary decagonal tilings

    NASA Astrophysics Data System (ADS)

    Fujita, Nobuhisa

    2010-04-01

    A new family of decagonal quasiperiodic tilings are constructed by the use of generalized point substitution processes, which is a new substitution formalism developed by the author [N. Fujita, Acta Cryst. A 65, 342 (2009)]. These tilings are composed of three prototiles: an acute rhombus, a regular pentagon and a barrel shaped hexagon. In the perpendicular space, these tilings have windows with fractal boundaries, and the windows are analytically derived as the fixed sets of the conjugate maps associated with the relevant substitution rules. It is shown that the family contains an infinite number of local isomorphism classes which can be grouped into several symmetry classes (e.g., C10, D5, etc.). The member tilings are transformed into one another through collective simpleton flips, which are associated with the reorganization in the window boundaries.

  7. Radioactivity in zircon and building tiles

    SciTech Connect

    Wen Deng; Kaizhen Tian; Daifu Chen; Yiyun Zhang

    1997-08-01

    Zircon (ZrSiO{sub 4}) is commonly used in The manufacture of glazed tiles. In this study we found high concentrations of the radionuclides {sup 226}Ra, {sup 232}tH, {sup 40}k in zircon sand. The average radium equivalent (A{sub Ra} + 1.26 A{sub Th} + 0.086 A{sub k}) in zircon sand is 17,500 Bq kg{sup -1}, which is 106 times as much as that in ordinary building materials. The external radiation ({gamma} + {beta}) dose rates from 1.1 to 4.9 x 10{sup -2} mGy h{sup -1} with an average of 2.1 x 10{sup -2} mGy h{sup -1}. Although no elevated {gamma}-ray radiation or radon exhalation rate was detected in rooms decorated with glazed tiles, which is characteristic of combined {alpha}, {beta} and {gamma} emitting thin materials, the average {gamma} radiation dose rate at the surface of the tile stacks in shops is 1.5 times as much as the indoor background level. The average area density of total {beta} emitting radionuclides in glazed floor tiles and glazed wall tiles is 0.30 Bq cm{sup -2} and 0.28 Bq cm{sup -2}, respectively. It was estimated that the average {beta} dose rates in tissue at a depth 7 mg cm{sup -2} with a distance 20-100 cm from the floor tiles were 3.2 to 0.9 x 10{sup -7} Gy h{sup -1}. The study indicates that the {beta}-rays from glazed tiles might be one of the main factors leading to an increase in ionizing radiation received by the general public. Workers in glazed tile manufacturing factories and in tile shops or stores may be exposed to elevated levels of both {beta}-rays and {gamma}-rays from zircon sand or glazed tile stacks. No elevated radiation from unglazed tiles was detected. 10 refs., 1 fig., 3 tabs.

  8. Manufacture of ceramic tiles from fly ash

    DOEpatents

    Hnat, J.G.; Mathur, A.; Simpson, J.C.

    1999-08-10

    The present invention relates to a process for forming glass-ceramic tiles. Fly ash containing organic material, metal contaminants, and glass forming materials is oxidized under conditions effective to combust the organic material and partially oxidize the metallic contaminants and the glass forming materials. The oxidized glass forming materials are vitrified to form a glass melt. This glass melt is then formed into tiles containing metallic contaminants. 6 figs.

  9. Cutting Symmetrical Recesses In Soft Ceramic Tiles

    NASA Technical Reports Server (NTRS)

    Nesotas, Tony C.; Tyler, Brent

    1989-01-01

    Simple tool cuts hemispherical recesses in soft ceramic tiles. Designed to expose wires of thermocouples embedded in tiles without damaging leads. Creates neat, precise holes around wires. End mill includes axial hole to accommodate thermocouple wires embedded in material to be cut. Wires pass into hole without being bent or broken. Dimensions in inches. Used in place of such tools as dental picks, tweezers, spatulas, and putty knives.

  10. Manufacture of ceramic tiles from fly ash

    DOEpatents

    Hnat, James G.; Mathur, Akshay; Simpson, James C.

    1999-01-01

    The present invention relates to a process for forming glass-ceramic tiles. Fly ash containing organic material, metal contaminants, and glass forming materials is oxidized under conditions effective to combust the organic material and partially oxidize the metallic contaminants and the glass forming materials. The oxidized glass forming materials are vitrified to form a glass melt. This glass melt is then formed into tiles containing metallic contaminants.

  11. Design and characterization of an ultraresolution seamlessly tiled display for data visualization

    NASA Astrophysics Data System (ADS)

    Bordes, Nicole; Bleha, William P.; Pailthorpe, Bernard

    2003-09-01

    The demand for more pixels in digital displays is beginning to be met as manufacturers increase the native resolution of projector chips. Tiling several projectors still offers one solution to augment the pixel capacity of a display. However problems of color and illumination uniformity across projectors need to be addressed as well as the computer software required to drive such devices. In this paper we present the results obtained on a desktop size tiled projector array of three D-ILA projectors sharing a common illumination source. The composite image on a 3 x 1 array, is 3840 by 1024 pixels with a resolution of about 80 dpi. The system preserves desktop resolution, is compact and can fit in a normal room or laboratory. A fiber optic beam splitting system and a single set of red, green and blue dichroic filters are the key to color and illumination uniformity. The D-ILA chips inside each projector can be adjusted individually to set or change characteristics such as contrast, brightness or gamma curves. The projectors were matched carefully and photometric variations were corrected, leading to a seamless tiled image. Photometric measurements were performed to characterize the display and losses through the optical paths, and are reported here. This system is driven by a small PC computer cluster fitted with graphics cards and is running Linux. The Chromium API can be used for tiling graphics tiles across the display and interfacing to users' software applications. There is potential for scaling the design to accommodate larger arrays, up to 4x5 projectors, increasing display system capacity to 50 Megapixels. Further increases, beyond 100 Megapixels can be anticipated with new generation D-ILA chips capable of projecting QXGA (2k x 1.5k), with ongoing evolution as QUXGA (4k x 2k) becomes available.

  12. Copy number analysis of the low-copy repeats at the primate NPHP1 locus by array comparative genomic hybridization.

    PubMed

    Yuan, Bo; Liu, Pengfei; Rogers, Jeffrey; Lupski, James R

    2016-06-01

    Array comparative genomic hybridization (aCGH) has been widely used to detect copy number variants (CNVs) in both research and clinical settings. A customizable aCGH platform may greatly facilitate copy number analyses in genomic regions with higher-order complexity, such as low-copy repeats (LCRs). Here we present the aCGH analyses focusing on the 45 kb LCRs [1] at the NPHP1 region with diverse copy numbers in humans. Also, the interspecies aCGH analysis comparing human and nonhuman primates revealed dynamic copy number transitions of the human 45 kb LCR orthologues during primate evolution and therefore shed light on the origin of complexity at this locus. The original aCGH data are available at GEO under GSE73962. PMID:27222811

  13. Differential analysis for high density tiling microarray data

    PubMed Central

    Ghosh, Srinka; Hirsch, Heather A; Sekinger, Edward A; Kapranov, Philipp; Struhl, Kevin; Gingeras, Thomas R

    2007-01-01

    Background High density oligonucleotide tiling arrays are an effective and powerful platform for conducting unbiased genome-wide studies. The ab initio probe selection method employed in tiling arrays is unbiased, and thus ensures consistent sampling across coding and non-coding regions of the genome. These arrays are being increasingly used to study the associated processes of transcription, transcription factor binding, chromatin structure and their association. Studies of differential expression and/or regulation provide critical insight into the mechanics of transcription and regulation that occurs during the developmental program of a cell. The time-course experiment, which comprises an in-vivo system and the proposed analyses, is used to determine if annotated and un-annotated portions of genome manifest coordinated differential response to the induced developmental program. Results We have proposed a novel approach, based on a piece-wise function – to analyze genome-wide differential response. This enables segmentation of the response based on protein-coding and non-coding regions; for genes the methodology also partitions differential response with a 5' versus 3' versus intra-genic bias. Conclusion The algorithm built upon the framework of Significance Analysis of Microarrays, uses a generalized logic to define regions/patterns of coordinated differential change. By not adhering to the gene-centric paradigm, discordant differential expression patterns between exons and introns have been identified at a FDR of less than 12 percent. A co-localization of differential binding between RNA Polymerase II and tetra-acetylated histone has been quantified at a p-value < 0.003; it is most significant at the 5' end of genes, at a p-value < 10-13. The prototype R code has been made available as supplementary material [see Additional file 1]. PMID:17892592

  14. Comparative study on mode-identification algorithms using a phased-array system in a rectangular duct

    NASA Astrophysics Data System (ADS)

    Suzuki, Takao; Day, Benjamin J.

    2015-07-01

    To identify multiple acoustic duct modes, conventional beam-forming, CLEAN as well as L2 (i.e. pseudo-inverse) and L1 generalized-inverse beam-forming are applied to phased-array pressure data. A tone signal of a prescribed mode or broadband signal is generated upstream of a curved rectangular duct, and acoustic fields formed in both upstream and downstream stations of the test section are measured with identical wall-mounted microphone arrays. Sound-power distributions of several horizontal and vertical modes including upstream- and downstream-propagating waves can be identified with phased-array techniques, and the results are compared among the four approaches. The comparisons using synthetic data demonstrate that the L2 generalized-inverse algorithm can sufficiently suppress undesirable noise levels and detect amplitude distributions accurately in over-determined cases (i.e. the number of microphones is more than the number of cut-on modes) with minimum computational cost. As the number of cut-on modes exceeds the number of microphones (i.e. under-determined problems), the L1 algorithm is necessary to retain better accuracy. The comparison using test data acquired in the curved duct test rig (CDTR) at NASA Langley Research Center suggests that the L1 /L2 generalized-inverse approach as well as CLEAN can improve the dynamic range of the detected mode by as much as 10 dB relative to conventional beam-forming even with mean flow of M=0.5.

  15. Effect of tillage on macropore flow and phosphorus transport to tile drains

    NASA Astrophysics Data System (ADS)

    Williams, Mark R.; King, Kevin W.; Ford, William; Buda, Anthony R.; Kennedy, Casey D.

    2016-04-01

    Elevated phosphorus (P) concentrations in subsurface drainage water are thought to be the result of P bypassing the soil matrix via macropore flow. The objectives of this study were to quantify event water delivery to tile drains via macropore flow paths during storm events and to determine the effect of tillage practices on event water and P delivery to tiles. Tile discharge, total dissolved P (DP) and total P (TP) concentrations, and stable oxygen and deuterium isotopic signatures were measured from two adjacent tile-drained fields in Ohio, USA during seven spring storms. Fertilizer was surface-applied to both fields and disk tillage was used to incorporate the fertilizer on one field while the other remained in no-till. Median DP concentration in tile discharge prior to fertilizer application was 0.08 mg L-1 in both fields. Following fertilizer application, median DP concentration was significantly greater in the no-tilled field (1.19 mg L-1) compared to the tilled field (0.66 mg L-1), with concentrations remaining significantly greater in the no-till field for the remainder of the monitored storms. Both DP and TP concentrations in the no-till field were significantly related to event water contributions to tile discharge, while only TP concentration was significantly related to event water in the tilled field. Event water accounted for between 26 and 69% of total tile discharge from both fields, but tillage substantially reduced maximum contributions of event water. Collectively, these results suggest that incorporating surface-applied fertilizers has the potential to substantially reduce the risk of P transport from tile-drained fields.

  16. Tile drainage phosphorus loss with long-term consistent cropping systems and fertilization.

    PubMed

    Zhang, T Q; Tan, C S; Zheng, Z M; Drury, C F

    2015-03-01

    Phosphorus (P) loss in tile drainage water may vary with agricultural practices, and the impacts are often hard to detect with short-term studies. We evaluated the effects of long-term (≥43 yr) cropping systems (continuous corn [CC], corn-oats-alfalfa-alfalfa rotation [CR], and continuous grass [CS]) and fertilization (fertilization [F] vs. no-fertilization [NF]) on P loss in tile drainage water from a clay loam soil over a 4-yr period. Compared with NF, long-term fertilization increased concentrations and losses of dissolved reactive P (DRP), dissolved unreactive P (DURP), and total P (TP) in tile drainage water, with the increments following the order: CS > CR > CC. Dissolved P (dissolved reactive P [DRP] and dissolved unreactive P [DURP]) was the dominant P form in drainage outflow, accounting for 72% of TP loss under F-CS, whereas particulate P (PP) was the major form of TP loss under F-CC (72%), F-CR (62%), NF-CS (66%), NF-CC (74%), and NF-CR (72%). Dissolved unreactive P played nearly equal roles as DRP in P losses in tile drainage water. Stepwise regression analysis showed that the concentration of P (DRP, DURP, and PP) in tile drainage flow, rather than event flow volume, was the most important factor contributing to P loss in tile drainage water, although event flow volume was more important in PP loss than in dissolved P loss. Continuous grass significantly increased P loss by increasing P concentration and flow volume of tile drainage water, especially under the fertilization treatment. Long-term grasslands may become a significant P source in tile-drained systems when they receive regular P addition. PMID:26023969

  17. Tile-Based Two-Dimensional Phase Unwrapping for Digital Holography Using a Modular Framework.

    PubMed

    Antonopoulos, Georgios C; Steltner, Benjamin; Heisterkamp, Alexander; Ripken, Tammo; Meyer, Heiko

    2015-01-01

    A variety of physical and biomedical imaging techniques, such as digital holography, interferometric synthetic aperture radar (InSAR), or magnetic resonance imaging (MRI) enable measurement of the phase of a physical quantity additionally to its amplitude. However, the phase can commonly only be measured modulo 2π, as a so called wrapped phase map. Phase unwrapping is the process of obtaining the underlying physical phase map from the wrapped phase. Tile-based phase unwrapping algorithms operate by first tessellating the phase map, then unwrapping individual tiles, and finally merging them to a continuous phase map. They can be implemented computationally efficiently and are robust to noise. However, they are prone to failure in the presence of phase residues or erroneous unwraps of single tiles. We tried to overcome these shortcomings by creating novel tile unwrapping and merging algorithms as well as creating a framework that allows to combine them in modular fashion. To increase the robustness of the tile unwrapping step, we implemented a model-based algorithm that makes efficient use of linear algebra to unwrap individual tiles. Furthermore, we adapted an established pixel-based unwrapping algorithm to create a quality guided tile merger. These original algorithms as well as previously existing ones were implemented in a modular phase unwrapping C++ framework. By examining different combinations of unwrapping and merging algorithms we compared our method to existing approaches. We could show that the appropriate choice of unwrapping and merging algorithms can significantly improve the unwrapped result in the presence of phase residues and noise. Beyond that, our modular framework allows for efficient design and test of new tile-based phase unwrapping algorithms. The software developed in this study is freely available. PMID:26599984

  18. Tile-Based Two-Dimensional Phase Unwrapping for Digital Holography Using a Modular Framework

    PubMed Central

    Antonopoulos, Georgios C.; Steltner, Benjamin; Heisterkamp, Alexander; Ripken, Tammo; Meyer, Heiko

    2015-01-01

    A variety of physical and biomedical imaging techniques, such as digital holography, interferometric synthetic aperture radar (InSAR), or magnetic resonance imaging (MRI) enable measurement of the phase of a physical quantity additionally to its amplitude. However, the phase can commonly only be measured modulo 2π, as a so called wrapped phase map. Phase unwrapping is the process of obtaining the underlying physical phase map from the wrapped phase. Tile-based phase unwrapping algorithms operate by first tessellating the phase map, then unwrapping individual tiles, and finally merging them to a continuous phase map. They can be implemented computationally efficiently and are robust to noise. However, they are prone to failure in the presence of phase residues or erroneous unwraps of single tiles. We tried to overcome these shortcomings by creating novel tile unwrapping and merging algorithms as well as creating a framework that allows to combine them in modular fashion. To increase the robustness of the tile unwrapping step, we implemented a model-based algorithm that makes efficient use of linear algebra to unwrap individual tiles. Furthermore, we adapted an established pixel-based unwrapping algorithm to create a quality guided tile merger. These original algorithms as well as previously existing ones were implemented in a modular phase unwrapping C++ framework. By examining different combinations of unwrapping and merging algorithms we compared our method to existing approaches. We could show that the appropriate choice of unwrapping and merging algorithms can significantly improve the unwrapped result in the presence of phase residues and noise. Beyond that, our modular framework allows for efficient design and test of new tile-based phase unwrapping algorithms. The software developed in this study is freely available. PMID:26599984

  19. Biofilm formation on the surface of ceramic tiles.

    PubMed

    Sessa, R; Di Pietro, M; Zamparelli, M; Schiavoni, G; Del Piano, M

    2000-10-01

    The aim of the study was to investigate the formation of biofilm on the surface of ceramic tiles, widely present in public and private buildings, using six parallel flow chambers. Our flow system was conceived and made to compare biofilm results by parallel distributed rectangular tiles. The tiles, divided into two identical A and B sections, were placed within the flow chambers. Biofilm formation was performed after 72 h and was quantified by viable counts of bacteria. Average viable counts ranged from 1.1x10(7) to 7.3x10(7) cfu cm(-2) and from 1.1x10(7) to 5.8x10(7) cfu cm(-2) respectively for biofilm A and B sections. As statistical analysis does not show significant differences, we can conclude that biofilms obtained were so similar to each other that they confirmed the system reproducibility. Our next step will be to use our system to study Legionella pneumophila and to evaluate the efficacy of antibacterial agents. PMID:11061629

  20. Comparative Analysis on the Performance of a Short String of Series-Connected and Parallel-Connected Photovoltaic Array Under Partial Shading

    NASA Astrophysics Data System (ADS)

    Vijayalekshmy, S.; Rama Iyer, S.; Beevi, Bisharathu

    2015-09-01

    The output power from the photovoltaic (PV) array decreases and the array exhibit multiple peaks when it is subjected to partial shading (PS). The power loss in the PV array varies with the array configuration, physical location and the shading pattern. This paper compares the relative performance of a PV array consisting of a short string of three PV modules for two different configurations. The mismatch loss, shading loss, fill factor and the power loss due to the failure in tracking of the global maximum power point, of a series string with bypass diodes and short parallel string are analysed using MATLAB/Simulink model. The performance of the system is investigated for three different conditions of solar insolation for the same shading pattern. Results indicate that there is considerable power loss due to shading in a series string during PS than in a parallel string with same number of modules.

  1. Tile drainage as karst: Conduit flow and diffuse flow in a tile-drained watershed

    NASA Astrophysics Data System (ADS)

    Schilling, Keith E.; Helmers, Matthew

    2008-02-01

    SummaryThe similarity of tiled-drained watersheds to karst drainage basins can be used to improve understanding of watershed-scale nutrient losses from subsurface tile drainage networks. In this study, short-term variations in discharge and chemistry were examined from a tile outlet collecting subsurface tile flow from a 963 ha agricultural watershed. Study objectives were to apply analytical techniques from karst springs to tile discharge to evaluate water sources and estimate the loads of agricultural pollutants discharged from the tile with conduit, intermediate and diffuse flow regimes. A two-member mixing model using nitrate, chloride and specific conductance was used to distinguish rainwater versus groundwater inputs. Results indicated that groundwater comprised 75% of the discharge for a three-day storm period and rainwater was primarily concentrated during the hydrograph peak. A contrasting pattern of solute concentrations and export loads was observed in tile flow. During base flow periods, tile flow consisted of diffuse flow from groundwater sources and contained elevated levels of nitrate, chloride and specific conductance. During storm events, suspended solids and pollutants adhered to soil surfaces (phosphorus, ammonium and organic nitrogen) were concentrated and discharged during the rapid, conduit flow portion of the hydrograph. During a three-day period, conduit flow occurred for 5.6% of the time but accounted for 16.5% of the total flow. Nitrate and chloride were delivered primarily with diffuse flow (more than 70%), whereas 80-94% of total suspended sediment, phosphorus and ammonium were exported with conduit and intermediate flow regimes. Understanding the water sources contributing to tile drainage and the manner by which pollutant discharge occurs from these systems (conduit, intermediate or diffuse flow) may be useful for designing, implementing and evaluating non-point source reduction strategies in tile-drained landscapes.

  2. Tiled WMS/KML Server V2

    NASA Technical Reports Server (NTRS)

    Plesea, Lucian

    2012-01-01

    This software is a higher-performance implementation of tiled WMS, with integral support for KML and time-varying data. This software is compliant with the Open Geospatial WMS standard, and supports KML natively as a WMS return type, including support for the time attribute. Regionated KML wrappers are generated that match the existing tiled WMS dataset. Ping and JPG formats are supported, and the software is implemented as an Apache 2.0 module that supports a threading execution model that is capable of supporting very high request rates. The module intercepts and responds to WMS requests that match certain patterns and returns the existing tiles. If a KML format that matches an existing pyramid and tile dataset is requested, regionated KML is generated and returned to the requesting application. In addition, KML requests that do not match the existing tile datasets generate a KML response that includes the corresponding JPG WMS request, effectively adding KML support to a backing WMS server.

  3. Approximation of virus structure by icosahedral tilings.

    PubMed

    Salthouse, D G; Indelicato, G; Cermelli, P; Keef, T; Twarock, R

    2015-07-01

    Viruses are remarkable examples of order at the nanoscale, exhibiting protein containers that in the vast majority of cases are organized with icosahedral symmetry. Janner used lattice theory to provide blueprints for the organization of material in viruses. An alternative approach is provided here in terms of icosahedral tilings, motivated by the fact that icosahedral symmetry is non-crystallographic in three dimensions. In particular, a numerical procedure is developed to approximate the capsid of icosahedral viruses by icosahedral tiles via projection of high-dimensional tiles based on the cut-and-project scheme for the construction of three-dimensional quasicrystals. The goodness of fit of our approximation is assessed using techniques related to the theory of polygonal approximation of curves. The approach is applied to a number of viral capsids and it is shown that detailed features of the capsid surface can indeed be satisfactorily described by icosahedral tilings. This work complements previous studies in which the geometry of the capsid is described by point sets generated as orbits of extensions of the icosahedral group, as such point sets are by construction related to the vertex sets of icosahedral tilings. The approximations of virus geometry derived here can serve as coarse-grained models of viral capsids as a basis for the study of virus assembly and structural transitions of viral capsids, and also provide a new perspective on the design of protein containers for nanotechnology applications. PMID:26131897

  4. Comparing passive source localization and tracking approaches with a towed horizontal receiver array in an ocean waveguide.

    PubMed

    Gong, Zheng; Tran, Duong D; Ratilal, Purnima

    2013-11-01

    Approaches for instantaneous passive source localization using a towed horizontal receiver array in a random range-dependent ocean waveguide are examined. They include: (1) Moving array triangulation, (2) array invariant, (3) bearings-only target motion analysis in modified polar coordinates via the extended Kalman filter, and (4) bearings-migration minimum mean-square error. These methods are applied to localize and track a vertical source array deployed in the far-field of a towed horizontal receiver array during the Gulf of Maine 2006 Experiment. The source transmitted intermittent broadband pulses in the 300 to 1200 Hz frequency range. A nonlinear matched-filter kernel designed to replicate the acoustic signal measured by the receiver array is applied to enhance the signal-to-noise ratio. The source localization accuracy is found to be highly dependent on source-receiver geometry and the localization approach. For a relatively stationary source drifting at speeds much slower than the receiver array tow-speed, the mean source position can be estimated by moving array triangulation with less than 3% error near broadside direction. For a moving source, the Kalman filter method gives the best performance with 5.5% error. The array invariant is the best approach for localizing sources within the endfire beam of the receiver array with 7% error. PMID:24180781

  5. Array-based comparative genomic hybridization for the detection of DNA sequence copy number changes in Barrett's adenocarcinoma.

    PubMed

    Albrecht, Bettina; Hausmann, Michael; Zitzelsberger, Horst; Stein, Hubert; Siewert, Jörg Rüdiger; Hopt, Ulrich; Langer, Rupert; Höfler, Heinz; Werner, Martin; Walch, Axel

    2004-07-01

    Array-based comparative genomic hybridization (aCGH) allows the identification of DNA sequence copy number changes at high resolution by co-hybridizing differentially labelled test and control DNAs to a micro-array of genomic clones. The present study has analysed a series of 23 formalin-fixed, paraffin wax-embedded tissue samples of Barrett's adenocarcinoma (BCA, n = 18) and non-neoplastic squamous oesophageal (n = 2) and gastric cardia mucosa (n = 3) by aCGH. The micro-arrays used contained 287 genomic targets covering oncogenes, tumour suppressor genes, and DNA sequences localized within chromosomal regions previously reported to be altered in BCA. DNA sequence copy number changes for a panel of approximately 50 genes were identified, most of which have not been previously described in BCA. DNA sequence copy number gains (mean 41 +/- 25/BCA) were more frequent than DNA sequence copy number losses (mean 20 +/- 15/BCA). The highest frequencies for DNA sequence copy number gains were detected for SNRPN (61%); GNLY (44%); NME1 (44%); DDX15, ABCB1 (MDR), ATM, LAMA3, MYBL2, ZNF217, and TNFRSF6B (39% each); and MSH2, TERC, SERPINE1, AFM137XA11, IGF1R, and PTPN1 (33% each). DNA sequence copy number losses were identified for PDGFB (44%); D17S125 (39%); AKT3 (28%); and RASSFI, FHIT, CDKN2A (p16), and SAS (CDK4) (28% each). In all non-neoplastic tissue samples of squamous oesophageal and gastric cardia mucosa, the measured mean ratios were 1.00 (squamous oesophageal mucosa) or 1.01 (gastric mucosa), indicating that no DNA sequence copy number chances were present. For validation, the DNA sequence copy number changes of selected clones (SNRPN, CMYC, HER2, ZNF217) detected by aCGH were confirmed by fluorescence in situ hybridization (FISH). These data show the sensitivity of aCGH for the identification of DNA sequence copy number changes at high resolution in BCA. The newly identified genes may include so far unknown biomarkers in BCA and are therefore a starting point for

  6. Nematic colloidal tilings as photonic materials

    NASA Astrophysics Data System (ADS)

    Ravnik, M.; Dontabhaktuni, J.; Cancula, M.; Zumer, S.

    2014-02-01

    Colloidal platelets are explored as elementary building blocks for the shape-controlled assembly of crystalline and quasicrystalline tilings. Using three-dimensional (3D) numerical modelling based on the minimization of Landau-de Gennes free energy for modelling of colloids combined with Finite Difference Time Domain calculations for optics, we demonstrate the self-assembly and optical (transmission) properties of triangular, square and pentagonal sub-micrometer sized platelets in a thin layer of nematic liquid crystal. Interactions between platelets are explored, providing an insight into the assembly process. Two-dimensional tilings of various-shaped colloidal platelets are demonstrated, and their use as diffraction layers is explored by using FDTD simulations. Designing symmetry-breaking surface anchoring profiles on pentagonal platelets opens also a possibility to achieve interactions that could lead to tilings with non-crystalline symmetry.

  7. Fiber-tile optical studies at Argonne

    SciTech Connect

    Underwood, D.G.; Morgan, D.J.; Proudfoot, J.

    1991-07-23

    In support of a fiber-tile calorimeter for SDC, we have done studies on a number of topics. The most basic problems were light output and uniformity of response. Using a small electron beam, we have studied fiber placement, tile preparation, wrapping and masking, fiber splicing, fiber routing, phototube response, and some degradation factors. We found two configurations which produced more light output than the others and reasonably uniform response. We have chosen one of these to go into production for the EM test module on the basis of fiber routing for ease of assembly of the calorimeter. We have also applied some of the tools we developed to CDF end plug tile uniformity, shower max testing and development for a couple of detectors, and development of better techniques for radiation damage studies. 18 figs.

  8. Remotely replaceable tokamak plasma limiter tiles

    DOEpatents

    Tsuo, Simon , Langford, Alison A.

    1989-01-01

    U-shaped limiter tiles placed end-to-end over a pair of parallel runners secured to a wall have two rods which engage L-shaped slots in the runners. The short receiving legs of the L-shaped slots are perpendicular to the wall and open away from the wall, while long retaining legs are parallel to and adjacent the wall. A sliding bar between the runners has grooves with clips to retain the rods pressed into receiving legs of the L-shaped slots in the runners. Sliding the bar in the direction of retaining legs of the L-shaped slots latches the tiles in place over the runners. Resilient contact strips between the parallel arms of the U-shaped tiles and the wall assure thermal and electrical contact with the wall.

  9. Recycling of Malaysia's electric arc furnace (EAF) slag waste into heavy-duty green ceramic tile.

    PubMed

    Teo, Pao-Ter; Anasyida, Abu Seman; Basu, Projjal; Nurulakmal, Mohd Sharif

    2014-12-01

    flexural strength, lowest apparent porosity and water absorption of EAF slag based tile was attained at the composition of 40 wt.% EAF slag--30 wt.% ball clay--10 wt.% feldspar--20 wt.% silica. The properties of ceramic tile made with EAF slag waste (up to 40 wt.%), especially flexural strength are comparable to those of commercial ceramic tile and are, therefore, suitable as high flexural strength and heavy-duty green ceramic floor tile. Continuous development is currently underway to improve the properties of tile so that this recycling approach could be one of the potential effective, efficient and sustainable solutions in sustaining our nature. PMID:25242607

  10. INTERIOR VIEW OF BATHROOM 1. SHOWING ORIGINAL MOSAIC PATTERN TILE ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    INTERIOR VIEW OF BATHROOM 1. SHOWING ORIGINAL MOSAIC PATTERN TILE FLOOR, TILE WAINSCOT AND SHOWER SURROUND, AND CERAMIC ACCESSORIES. VIEW FACING EAST. - Hickam Field, Officers' Housing Type J, 701 Beard Street, Honolulu, Honolulu County, HI

  11. INTERIOR VIEW OF BATHROOM 1 SHOWING THE MOSAICPATTERN TILE FLOOR. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    INTERIOR VIEW OF BATHROOM 1 SHOWING THE MOSAIC-PATTERN TILE FLOOR. CERAMIC TILE WAINSCOT, AND CERAMIC ACCESSORIES. VIEW FACING NORTH. - Hickam Field, Officers' Housing Type H, 208 Sixth Street, Honolulu, Honolulu County, HI

  12. Random and ordered phases of off-lattice rhombus tiles.

    PubMed

    Whitelam, Stephen; Tamblyn, Isaac; Beton, Peter H; Garrahan, Juan P

    2012-01-20

    We study the covering of the plane by nonoverlapping rhombus tiles, a problem well studied only in the limiting case of dimer coverings of regular lattices. We go beyond this limit by allowing tiles to take any position and orientation on the plane, to be of irregular shape, and to possess different types of attractive interactions. Using extensive numerical simulations, we show that at large tile densities there is a phase transition from a fluid of rhombus tiles to a solid packing with broken rotational symmetry. We observe self-assembly of broken-symmetry phases, even at low densities, in the presence of attractive tile-tile interactions. Depending on the tile shape and interactions, the solid phase can be random, possessing critical orientational fluctuations, or crystalline. Our results suggest strategies for controlling tiling order in experiments involving "molecular rhombi." PMID:22400760

  13. Random and ordered phases of off-lattice rhombus tiles

    NASA Astrophysics Data System (ADS)

    Whitelam, Stephen; Tamblyn, Isaac; Beton, Peter; Garrahan, Juan

    2012-02-01

    We study the covering of the plane by non-overlapping rhombus tiles, a problem well-studied only in the limiting case of dimer coverings of regular lattices. We go beyond this limit by allowing tiles to take any position and orientation on the plane, to be of irregular shape, and to possess different types of attractive interactions. Using extensive numerical simulations we show that at large tile densities there is a phase transition from a fluid of rhombus tiles to a solid packing with broken rotational symmetry. We observe self-assembly of broken-symmetry phases, even at low densities, in the presence of attractive tile-tile interactions. Depending on tile shape and interactions the solid phase can be random, possessing critical orientational fluctuations, or crystalline. Our results suggest strategies for controlling tiling order in experiments involving ``molecular rhombi.''

  14. Random and Ordered Phases of Off-Lattice Rhombus Tiles

    NASA Astrophysics Data System (ADS)

    Whitelam, Stephen; Tamblyn, Isaac; Beton, Peter H.; Garrahan, Juan P.

    2012-01-01

    We study the covering of the plane by nonoverlapping rhombus tiles, a problem well studied only in the limiting case of dimer coverings of regular lattices. We go beyond this limit by allowing tiles to take any position and orientation on the plane, to be of irregular shape, and to possess different types of attractive interactions. Using extensive numerical simulations, we show that at large tile densities there is a phase transition from a fluid of rhombus tiles to a solid packing with broken rotational symmetry. We observe self-assembly of broken-symmetry phases, even at low densities, in the presence of attractive tile-tile interactions. Depending on the tile shape and interactions, the solid phase can be random, possessing critical orientational fluctuations, or crystalline. Our results suggest strategies for controlling tiling order in experiments involving “molecular rhombi.”

  15. AIRBORNE ASBESTOS CONCENTRATIONS DURING BUFFING OF RESILIENT FLOOR TILE

    EPA Science Inventory

    Although asbestos-containing resilient floor tiles are considered nonfriable, the frictional forces exerted on the tile during routine maintenance operations can generate asbestos-containing structures. tudy was conducted to determine the level of airborne asbestos concentrations...

  16. Dynamical implications of Viral Tiling Theory.

    PubMed

    ElSawy, K M; Taormina, A; Twarock, R; Vaughan, L

    2008-05-21

    The Caspar-Klug classification of viruses whose protein shell, called viral capsid, exhibits icosahedral symmetry, has recently been extended to incorporate viruses whose capsid proteins are exclusively organised in pentamers. The approach, named 'Viral Tiling Theory', is inspired by the theory of quasicrystals, where aperiodic Penrose tilings enjoy 5-fold and 10-fold local symmetries. This paper analyses the extent to which this classification approach informs dynamical properties of the viral capsids, in particular the pattern of Raman active modes of vibrations, which can be observed experimentally. PMID:18353372

  17. Degenerate polygonal tilings in simple animal tissues

    NASA Astrophysics Data System (ADS)

    Ziherl, Primoz; Hocevar, Ana

    2009-03-01

    We study 2D polygonal tilings as models of the en-face structure of single-layer biological tissues. Using numerical simulations, we explore the phase diagram of equilibrium tilings of equal-area, equal-perimeter convex polygons whose energy is independent of their shape. We identify 3 distinct phases, which are all observed in simple epithelial tissues: The disordered phase of polygons with 4-9 sides, the hexatic phase, and the hexagonal phase with perfect 6-fold coordination. We quantify their structure using Edwards' statistical mechanics of cellular systems.

  18. Identification of Clinically Important Chromosomal Aberrations in Acute Myeloid Leukemia by Array-Based Comparative Genomic Hybridization

    PubMed Central

    Mehrotra, Meenakshi; Luthra, Rajyalakshmi; Ravandi, Farhad; Sargent, Rachel L.; Barkoh, Bedia A; Abraham, Ronald; Mishra, Bal Mukund; Medeiros, L. Jeffrey; Patel, Keyur P.

    2014-01-01

    Array-based comparative genomic hybridization (aCGH) chromosomal analysis facilitates rapid detection of cytogenetic abnormalities previously undetectable by conventional cytogenetics. In this study, we analyze 48 uniformly treated acute myeloid leukemia (AML) patients by 44K aCGH and correlated the findings with clinical outcome. aCGH identified previously undetected aberrations, as small as 5 kb, of currently unknown significance. The 36.7 Mb minimally deleted region on chromosome 5 lies between 5q14.3 to 5q33.3 contains 634 genes and 15 microRNAs whereas loss of chromosome 17 spans 3,194 kb involves 342 genes and 12 microRNAs. Loss of 155 kilobase (kb) region on 5q33.3 (p<0.05) is associated with achievement of complete remission. In contrast, loss of 17p11.2-q11.1 was associated with lower CR rate and poorer overall survival (Kaplan-Meier analysis, p<0.0096). aCGH detected loss of 17p in 12/48 patients as compared to 9/48 by conventional karyotyping. In conclusion, aCGH analysis adds to the prognostic stratification of AML patients. PMID:24446873

  19. Comparative particle recoveries by the retracting rotorod, rotoslide and Burkard spore trap sampling in a compact array

    NASA Astrophysics Data System (ADS)

    Solomon, W. R.; Burge, H. A.; Boise, J. R.; Becker, M.

    1980-06-01

    An array comprising 4 intermittent (retracting) rotorods, 3 (“swingshield”) rotoslides and one Burkard (Hirst) automatic volumetric spore trap was operated on an urban rooftop during 70 periods of 9, 15 or 24 hours in late summer. Standard sampling procedures were utilized and recoveries of pollens as well as spores of Alternaria, Epicoccum, Pithomyces and Ganoderma species compared. Differences between paired counts from each sampler type showed variances increasing with levels of particle prevalence (and deposition). In addition, minimal, non-random, side-to-side and intersampler differences were noted for both impactor types. Exclusion of particles between operating intervals by rotoslides and rotorods was virtually complete. Spore trap recoveries for all particle categories, per m3, exceeded those by both impactors. The greatest (7-fold) difference was noted for the smallest type examined ( Ganoderma). For ragweed pollen, an overall spore trap/impactor ratio approached 1.5. Rain effects were difficult to discern but seemed to influence rotoslides least. Overall differences between impactors were quite small but generally favored the rotoslide in this comparison. Our data confirm the relative advantages of suction traps for small particles. Both impactors and spore traps are suited to pollen and large spore collection, and, with some qualification, data from both may be compared.

  20. Candidate metastasis suppressor genes uncovered by array comparative genomic hybridization in a mouse allograft model of prostate cancer

    PubMed Central

    Yi, Yajun; Nandana, Srinivas; Case, Thomas; Nelson, Colleen; Radmilovic, Tatjana; Matusik, Robert J; Tsuchiya, Karen D

    2009-01-01

    Background The purpose of this study was to identify candidate metastasis suppressor genes from a mouse allograft model of prostate cancer (NE-10). This allograft model originally developed metastases by twelve weeks after implantation in male athymic nude mice, but lost the ability to metastasize after a number of in vivo passages. We performed high resolution array comparative genomic hybridization on the metastasizing and non-metastasizing allografts to identify chromosome imbalances that differed between the two groups of tumors. Results This analysis uncovered a deletion on chromosome 2 that differed between the metastasizing and non-metastasizing tumors. Bioinformatics filters were employed to mine this region of the genome for candidate metastasis suppressor genes. Of the 146 known genes that reside within the region of interest on mouse chromosome 2, four candidate metastasis suppressor genes (Slc27a2, Mall, Snrpb, and Rassf2) were identified. Quantitative expression analysis confirmed decreased expression of these genes in the metastasizing compared to non-metastasizing tumors. Conclusion This study presents combined genomics and bioinformatics approaches for identifying potential metastasis suppressor genes. The genes identified here are candidates for further studies to determine their functional role in inhibiting metastases in the NE-10 allograft model and human prostate cancer. PMID:19781100

  1. Development of a nondestructive vibration technique for bond assessment of Space Shuttle tiles

    NASA Astrophysics Data System (ADS)

    Moslehy, Faissal A.

    1994-02-01

    This final report describes the achievements of the above titled project. The project is funded by NASA-KSC (Grant No. NAG 10-0117) for the period of 1 Jan. to 31 Dec. 1993. The purpose of this project was to develop a nondestructive, noncontact technique based on 'vibration signature' of tile systems to quantify the bond conditions of the thermal protection system) tiles of Space Shuttle orbiters. The technique uses a laser rapid scan system, modal measurements, and finite element modeling. Finite element models were developed for tiles bonded to both clamped and deformable integrated skin-stringer orbiter mid-fuselage. Results showed that the size and location of a disbonded tile can be determined from frequency and mode shape information. Moreover, a frequency response survey was used to quickly identify the disbonded tiles. The finite element results were compared with experimentally determined frequency responses of a 17-tile test panel, where a rapidscan laser system was employed. An excellent degree of correlation between the mathematical simulation and experimental results was realized. An inverse solution for single-tile assemblies was also derived and is being implemented into a computer program that can interact with the modal testing software. The output of the program displays the size and location of disbond. This program has been tested with simulated input (i.e., finite element data), and excellent agreement between predicted and simulated disbonds was shown. Finally, laser vibration imaging and acoustic emission techniques were shown to be well suited for detecting and monitoring the progressive damage in Graphite/Epoxy composite materials.

  2. Development of a nondestructive vibration technique for bond assessment of Space Shuttle tiles

    NASA Technical Reports Server (NTRS)

    Moslehy, Faissal A.

    1994-01-01

    This final report describes the achievements of the above titled project. The project is funded by NASA-KSC (Grant No. NAG 10-0117) for the period of 1 Jan. to 31 Dec. 1993. The purpose of this project was to develop a nondestructive, noncontact technique based on 'vibration signature' of tile systems to quantify the bond conditions of the thermal protection system) tiles of Space Shuttle orbiters. The technique uses a laser rapid scan system, modal measurements, and finite element modeling. Finite element models were developed for tiles bonded to both clamped and deformable integrated skin-stringer orbiter mid-fuselage. Results showed that the size and location of a disbonded tile can be determined from frequency and mode shape information. Moreover, a frequency response survey was used to quickly identify the disbonded tiles. The finite element results were compared with experimentally determined frequency responses of a 17-tile test panel, where a rapidscan laser system was employed. An excellent degree of correlation between the mathematical simulation and experimental results was realized. An inverse solution for single-tile assemblies was also derived and is being implemented into a computer program that can interact with the modal testing software. The output of the program displays the size and location of disbond. This program has been tested with simulated input (i.e., finite element data), and excellent agreement between predicted and simulated disbonds was shown. Finally, laser vibration imaging and acoustic emission techniques were shown to be well suited for detecting and monitoring the progressive damage in Graphite/Epoxy composite materials.

  3. Thermal-Structural Analysis of PICA Tiles for Solar Tower Test

    NASA Technical Reports Server (NTRS)

    Agrawal, Parul; Empey, Daniel M.; Squire, Thomas H.

    2009-01-01

    Thermal protection materials used in spacecraft heatshields are subjected to severe thermal and mechanical loading environments during re-entry into earth atmosphere. In order to investigate the reliability of PICA tiles in the presence of high thermal gradients as well as mechanical loads, the authors designed and conducted solar-tower tests. This paper presents the design and analysis work for this tests series. Coupled non-linear thermal-mechanical finite element analyses was conducted to estimate in-depth temperature distribution and stress contours for various cases. The first set of analyses performed on isolated PICA tile showed that stresses generated during the tests were below the PICA allowable limit and should not lead to any catastrophic failure during the test. The tests results were consistent with analytical predictions. The temperature distribution and magnitude of the measured strains were also consistent with predicted values. The second test series is designed to test the arrayed PICA tiles with various gap-filler materials. A nonlinear contact method is used to model the complex geometry with various tiles. The analyses for these coupons predict the stress contours in PICA and inside gap fillers. Suitable mechanical loads for this architecture will be predicted, which can be applied during the test to exceed the allowable limits and demonstrate failure modes. Thermocouple and strain-gauge data obtained from the solar tower tests will be used for subsequent analyses and validation of FEM models.

  4. High-resolution detection of recurrent aberrations in lung adenocarcinomas by array comparative genomic hybridization and expression analysis of selective genes by quantitative PCR.

    PubMed

    Zhu, Hong; Wong, Maria Pik; Tin, Vicky

    2014-06-01

    Genomic abnormalities are the hallmark of cancers and may harbor potential candidate genes important for cancer development and progression. We performed array comparative genomic hybridization (array CGH) on 36 cases of primary lung adenocarcinoma (AD) using an array containing 2621 BAC or PAC clones spanning the genome at an average interval of 1 Mb. Array CGH identified the commonest aberrations consisting of DNA gains within 1p, 1q, 5p, 5q, 7p, 7q, 8q, 11q, 12p, 13q, 16p, 17q, 20q, and losses with 6q, 9p, 10q and 18q. High-level copy gains involved mainly 7p21-p15 and 20q13.3. Dual color fluorescence in situ hybridization (FISH) was performed on a selective locus for validation of array CGH results. Genomic aberrations were compared with different clinicopathological features and a trend of higher number of aberrations in tumors with aggressive phenotypes and current tobacco exposure was identified. According to array CGH data, 23 candidate genes were selected for quantitative PCR (qPCR) analysis. The concordance observed between the genomic and expression changes in most of the genes suggested that they could be candidate cancer-related genes that contributed to the development of lung AD. PMID:24728343

  5. Production and characterization of glazed tiles containing incinerated sewage sludge.

    PubMed

    Lin, D F; Chang, W C; Yuan, C; Luo, H L

    2008-01-01

    In this article, glaze with different colorants was applied to tile specimens manufactured by incinerated sewage sludge ash (ISSA) and clay. Improvements using different amounts of colorants, and glaze components and concentrations on tile bodies were investigated. Four different proportions of clay (by weight ratio) were replaced by ISSA. Tiles of size 12 cm x 6 cm x 1 cm were made and left in an electric furnace to make biscuit tiles at 800 degrees C. Afterwards, four colorants, Fe2O3 (red), V2O5 (yellow), CoCO3 (blue), and MnO2 (purple), and four different glaze concentrations were applied on biscuit tile specimens. These specimens were later sintered into glazed tiles at 1050 degrees C. The study shows that replacement of clay by sludge ash had adverse effects on properties of tiles. Water absorption increased and bending strength reduced with increased amounts of ash. However, both water absorption and bending strength improved for glazed ash tiles. Abrasion of grazed tiles reduced noticeably from 0.001 to 0.002 g. This implies glaze can enhance abrasion resistance of tiles. Effects like lightfastness and acid-alkali resistance improved as different glazes were applied on tiles. In general, red glazed tiles showed the most stable performance, followed by blue, yellow, and purple. PMID:17433656

  6. Installation of Ceramic Tile: Residential Thin-Set Methods.

    ERIC Educational Resources Information Center

    Short, Sam

    This curriculum guide contains materials for use in teaching a course on residential thin-set methods of tile installation. Covered in the individual units are the following topics: the tile industry; basic math; tools; measurement; safety in tile setting; installation materials and guidelines for their use; floors; counter tops and backsplashes;…

  7. Two Views of Islam: Ceramic Tile Design and Miniatures.

    ERIC Educational Resources Information Center

    Macaulay, Sara Grove

    2001-01-01

    Describes an art project focusing on Islamic art that consists of two parts: (1) ceramic tile design; and (2) Islamic miniatures. Provides background information on Islamic art and step-by-step instructions for designing the Islamic tile and miniature. Includes learning objectives and resources on Islamic tile miniatures. (CMK)

  8. WATER TABLE LEVEL AS INFLUENCED BY TILING METHOD

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Sections of the research farm were tiled in the fall of 1979. The primary reason for the tiling was to provide a good soil environment for large tillage trial plots that had been previously established. This was also used as an opportunity to install a comparison of tile installation with a conven...

  9. 21. TILES OF THE NEW WORLD PANEL, NORTH WALL OF ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    21. TILES OF THE NEW WORLD PANEL, NORTH WALL OF THE INDIAN HOUSE. THE RELIEF BROCADE TILES ILLUSTRATE SCENES OF NATIVE AMERICAN HISTORY AND CULTURE, AND THE EARLY EUROPEAN EXPLORATION OF THE NEW WORLD. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

  10. 90. TILES OF THE NEW WORLD PANEL, NORTH WALL OF ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    90. TILES OF THE NEW WORLD PANEL, NORTH WALL OF THE INDIAN HOUSE. THE RELIEF BROCADE TILES ILLUSTRATE SCENES OF NATIVE AMERICAN HISTORY AND CULTURE, AND THE EARLY EUROPEAN EXPLORATION OF THE NEW WORLD. SAME VIEW AS PA-107-21. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

  11. Recurrent chromosomal aberrations in intravenous leiomyomatosis of the uterus: high-resolution array comparative genomic hybridization study.

    PubMed

    Buza, Natalia; Xu, Fang; Wu, Weiqing; Carr, Ryan J; Li, Peining; Hui, Pei

    2014-09-01

    Uterine intravenous leiomyomatosis (IVL) is a distinct smooth muscle neoplasm with a potential of clinical aggressiveness due to its ability to extend into intrauterine and extrauterine vasculature. In this study, chromosomal alterations analyzed by oligonucleotide array comparative genomic hybridization were performed in 9 cases of IVL. The analysis was informative in all cases with multiple copy number losses and/or gains observed in each tumor. The most frequent recurrent loss of 22q12.3-q13.1 was observed in 6 tumors (66.7%), followed by losses of 22q11.23-q13.31, 1p36.13-p33, 2p25.3-p23.3, and 2q24.2-q32.2 and gains of 6p22.2, 2q37.3 and 10q22.2-q22.3, in decreasing order of frequency. Copy number variants were identified at 14q11.2, 15q11.1-q11.2, and 15q26.2. Genes mapping to the regions of loss include CHEK2, EWS, NF2, PDGFB, and MAP3K7IP1 on chromosome 22q, HEI10 on chromosome 14q, and succinate dehydrogenase subunit B, E2F2, ARID1A KPNA6, EIF3S2 , PTCH2, and PIK3R3 on chromosome 1p. Regional losses on chromosomes 22q and 1p and gains on chromosomes 12q showed overlaps with those previously observed in uterine leiomyosarcomas. In addition, presence of multiple chromosomal aberrations implies a higher level of genetic instability. Follow-up polymerase chain reaction (PCR) sequencing analysis of MED12 gene revealed absence of G> A transition at nucleotides c.130 or c.131 in all 9 cases, a frequent mutation found in uterine leiomyoma and its variants. In conclusion, this is the first report of high-resolution, genome-wide investigation of IVL by oligonucleotide array comparative genomic hybridization. The presence of high frequencies of recurrent regional loss involving several chromosomes is an important finding and likely related to the pathogenesis of the disease. PMID:25033729

  12. Jagged Tiling for Intra-tile Parallelism and Fine-Grain Multithreading

    SciTech Connect

    Shrestha, Sunil; Manzano Franco, Joseph B.; Marquez, Andres; Feo, John T.; Gao, Guang R.

    2015-05-01

    In this paper, we have developed a novel methodology that takes into consideration multithreaded many-core designs to better utilize memory/processing resources and improve memory residence on tileable applications. It takes advantage of polyhedral analysis and transformation in the form of PLUTO, combined with a highly optimized finegrain tile runtime to exploit parallelism at all levels. The main contributions of this paper include the introduction of multi-hierarchical tiling techniques that increases intra tile parallelism; and a data-flow inspired runtime library that allows the expression of parallel tiles with an efficient synchronization registry. Our current implementation shows performance improvements on an Intel Xeon Phi board up to 32.25% against instances produced by state-of-the-art compiler frameworks for selected stencil applications.

  13. CFD-Predicted Tile Heating Bump Factors Due to Tile Overlay Repairs

    NASA Technical Reports Server (NTRS)

    Lessard, Victor R.

    2006-01-01

    A Computational Fluid Dynamics investigation of the Orbiter's Tile Overlay Repair (TOR) is performed to assess the aeroheating Damage Assessment Team's (DAT) existing heating correlation method for protuberance interference heating on the surrounding thermal protection system. Aerothermodynamic heating analyses are performed for TORs at the design reference damage locations body points 1800 and 1075 for a Mach 17.9 and a=39deg STS-107 flight trajectory point with laminar flow. Six different cases are considered. The computed peak heating bump factor on the surrounding tiles are below the DAT's heating bump factor values for smooth tile cases. However, for the uneven tiles cases the peak interference heating is shown to be considerably higher than the existing correlation prediction.

  14. Hollow clay tile wall program summary report

    SciTech Connect

    Henderson, R.C.; Jones, W.D.

    1995-07-30

    Many of the Y-12 Plant buildings, constructed during the 1940s and 1950s, consist of steel ed concrete framing infilled with hollow clay tile (HCT). The infill was intended to provide for building enclosure and was not designed to have vertical or lateral load-carrying capacity. During the late 1970s and early 1980s, seismic and wind evaluations were performed on many of these buildings in conjunction with the preparation of a site-wide safety analysis report. This analytical work, based on the best available methodology, considered lateral load-carrying capacity of the HCT infill on the basis of building code allowable shear values. In parallel with the analysis effort, DOE initiated a program to develop natural phenomena capacity and performance criteria for existing buildings, but these criteria did not specify guidelines for determining the lateral force capacity of frames infilled with HCT. The evaluation of infills was, therefore, based on the provisions for the design of unreinforced masonry as outlined in standard masonry codes. When the results of the seismic and wind evaluations were compared with the new criteria, the projected building capacities fell short of the requirements. Apparently, if the buildings were to meet the new criteria, many millions of dollars would be required for building upgrades. Because the upgrade costs were significant, the assumptions and approaches used in the analyses were reevaluated. Four issues were identified: (1) Once the infilled walls cracked, what capacity (nonlinear response), if any, would the walls have to resist earthquake or wind loads applied in the plane of the infill (in-plane)? (2) Would the infilled walls remain within the steel or reinforced concrete framing when subjected to earthquake or high wind loads applied perpendicular to the infill (out-of-plane)? (3) What was the actual shear capacity of the HCT infill? (4) Was modeling the HCT infill as a shear wall the best approach?

  15. Molecular ping-pong Game of Life on a two-dimensional DNA origami array.

    PubMed

    Jonoska, N; Seeman, N C

    2015-07-28

    We propose a design for programmed molecular interactions that continuously change molecular arrangements in a predesigned manner. We introduce a model where environmental control through laser illumination allows platform attachment/detachment oscillations between two floating molecular species. The platform is a two-dimensional DNA origami array of tiles decorated with strands that provide both, the floating molecular tiles to attach and to pass communicating signals to neighbouring array tiles. In particular, we show how algorithmic molecular interactions can control cyclic molecular arrangements by exhibiting a system that can simulate the dynamics similar to two-dimensional cellular automata on a DNA origami array platform. PMID:26078341

  16. Computer-controlled optical scanning tile microscope.

    PubMed

    Wang, C; Shumyatsky, P; Zeng, F; Zevallos, M; Alfano, R R

    2006-02-20

    A new type of computer-controlled optical scanning, high-magnification imaging system with a large field of view is described that overcomes the commonly believed incompatibility of achieving both high magnification and a large field of view. The new system incorporates galvanometer scanners, a CCD camera, and a high-brightness LED source for the fast acquisition of a large number of a high-resolution segmented tile images with a magnification of 800x for each tile. The captured segmented tile images are combined to create an effective enlarged view of a target totaling 1.6 mm x 1.2 mm in area. The speed and sensitivity of the system make it suitable for high-resolution imaging and monitoring of a small segmented area of 320 microm x 240 microm with 4 microm resolution. Each tile segment of the target can be zoomed up without loss of the high resolution. This new microscope imaging system gives both high magnification and a large field of view. This microscope can be utilized in medicine, biology, semiconductor inspection, device analysis, and quality control. PMID:16523776

  17. High Temperature Filler for Tile Gaps

    NASA Technical Reports Server (NTRS)

    Holt, J. W.; Wang, D. S.

    1983-01-01

    Gaps between ceramic tiles filled with ceramic-coated fabric that withstands temperatures as high as 2,000 degrees F (1,300 degrees C). Reusable high-temperature gap filler is made of fabric coated with ceramic slurry and bonded in place with room-temperature-vulcanized adhesive. Procedure used in kilns and furnaces.

  18. L-Tromino Tiling of Multilated Chessboards

    ERIC Educational Resources Information Center

    Gardner, Martin

    2009-01-01

    An "n" x "n" chessboard is called deficient if one square is missing from any spot on the board. Can all deficient boards with a number of cells divisible by 3 be tiled by bent (or L-shaped) trominoes? The answer is yes, with exception of the order-5 board. This paper deals with the general problem plus numerous related puzzles and proofs…

  19. TILE at Iowa: Adoption and Adaptation

    ERIC Educational Resources Information Center

    Florman, Jean C.

    2014-01-01

    This chapter introduces a University of Iowa effort to enhance and support active learning pedagogies in technology-enhanced (TILE) classrooms and three elements that proved essential to the campus-wide adoption of those pedagogies. It then describes the impact of those professional development efforts on the curricula and cultures of three…

  20. Performance of the ATLAS Tile Calorimeter

    NASA Astrophysics Data System (ADS)

    Heelan, Louise; ATLAS Collaboration

    2015-06-01

    The ATLAS Tile hadronic calorimeter (TileCal) provides highly-segmented energy measurements of incoming particles. It is a key detector for the measurement of hadrons, jets, tau leptons and missing transverse energy. It is also useful for identification and reconstruction of muons due to good signal to noise ratio. The calorimeter consists of thin steel plates and 460,000 scintillating tiles configured into 5000 cells, each viewed by two photomultipliers. The calorimeter response and its readout electronics is monitored to better than 1% using radioactive source, laser and charge injection systems. The calibration and performance of the calorimeter have been established through test beam measurements, cosmic ray muons and the large sample of proton-proton collisions acquired in 2011 and 2012. Results on the calorimeter performance are presented, including the absolute energy scale, timing, noise and associated stabilities. The results demonstrate that the Tile Calorimeter has performed well within the design requirements and it has given essential contribution to reconstructed objects and physics results. In addition, the data quality procedures used during the LHC data-taking are described and the outcome of the detector consolidation in the maintenance period is also presented.

  1. Array comparative genomic hybridization and sequencing of 23 genes in 80 patients with myelofibrosis at chronic or acute phase.

    PubMed

    Brecqueville, Mandy; Rey, Jérôme; Devillier, Raynier; Guille, Arnaud; Gillet, Rémi; Adélaide, José; Gelsi-Boyer, Véronique; Arnoulet, Christine; Chaffanet, Max; Mozziconacci, Marie-Joelle; Vey, Norbert; Birnbaum, Daniel; Murati, Anne

    2014-01-01

    Myelofibrosis is a myeloproliferative neoplasm that occurs de novo (primary myelofibrosis) or results from the progression of polycythemia vera or essential thrombocytemia (hereafter designated as secondary myelofibrosis or post-polycythemia vera/ essential thrombocythemia myelofibrosis). To progress in the understanding of myelofibrosis and to find molecular prognostic markers we studied 104 samples of primary and secondary myelofibrosis at chronic (n=68) and acute phases (n=12) from 80 patients, by using array-comparative genomic hybridization and sequencing of 23 genes (ASXL1, BMI1, CBL, DNMT3A, EZH2, IDH1/2, JAK2, K/NRAS, LNK, MPL, NF1, PPP1R16B, PTPN11, RCOR1, SF3B1, SOCS2, SRSF2, SUZ12, TET2, TP53, TRPS1). We found copy number aberrations in 54% of samples, often involving genes with a known or potential role in leukemogenesis. We show that cases carrying a del(20q), del(17) or del(12p) evolve in acute myeloid leukemia (P=0.03). We found that 88% of the cases were mutated, mainly in signaling pathway (JAK2 69%, NF1 6%) and epigenetic genes (ASXL1 26%, TET2 14%, EZH2 8%). Overall survival was poor in patients with more than one mutation (P=0.001) and in patients with JAK2/ASXL1 mutations (P=0.02). Our study highlights the heterogeneity of myelofibrosis, and points to several interesting copy number aberrations and genes with diagnostic and prognostic impact. PMID:23996481

  2. A landsat data tiling and compositing approach optimized for change detection in the conterminous United States

    USGS Publications Warehouse

    Nelson, Kurtis; Steinwand, Daniel R.

    2015-01-01

    Annual disturbance maps are produced by the LANDFIRE program across the conterminous United States (CONUS). Existing LANDFIRE disturbance data from 1999 to 2010 are available and current efforts will produce disturbance data through 2012. A tiling and compositing approach was developed to produce bi-annual images optimized for change detection. A tiled grid of 10,000 × 10,000 30 m pixels was defined for CONUS and adjusted to consolidate smaller tiles along national borders, resulting in 98 non-overlapping tiles. Data from Landsat-5,-7, and -8 were re-projected to the tile extents, masked to remove clouds, shadows, water, and snow/ice, then composited using a cosine similarity approach. The resultant images were used in a change detection algorithm to determine areas of vegetation change. This approach enabled more efficient processing compared to using single Landsat scenes, by taking advantage of overlap between adjacent paths, and allowed an automated system to be developed for the entire process.

  3. The Monitoring and Calibration Web Systems for the ATLAS Tile Calorimeter Data Quality Analysis

    NASA Astrophysics Data System (ADS)

    Sivolella, A.; Maidantchik, C.; Ferreira, F.

    2012-12-01

    The Tile Calorimeter (TileCal) is one of the ATLAS sub-detectors. The read-out is performed by about 10,000 PhotoMultiplier Tubes (PMTs). The signal of each PMT is digitized by an electronic channel. The Monitoring and Calibration Web System (MCWS) supports the data quality analysis of the electronic channels. This application was developed to assess the detector status and verify its performance. It can provide to the user the list of TileCal known problematic channels, that is stored in the ATLAS condition database (COOL DB). The bad channels list guides the data quality validator in identifying new problematic channels and is used in data reconstruction and the system allows to update the channels list directly in the COOL database. MCWS can generate summary results, such as eta-phi plots and comparative tables of the masked channels percentage. Regularly, during the LHC (Large Hadron Collider) shutdown a maintenance of the detector equipments is performed. When a channel is repaired, its calibration constants stored in the COOL database have to be updated. Additionally MCWS system manages the update of these calibration constants values in the COOL database. The MCWS has been used by the Tile community since 2008, during the commissioning phase, and was upgraded to comply with ATLAS operation specifications. Among its future developments, it is foreseen an integration of MCWS with the TileCal control Web system (DCS) in order to identify high voltage problems automatically.

  4. Salmonella and fecal indicator bacteria in tile waters draining poultry litter application fields in central Iowa

    NASA Astrophysics Data System (ADS)

    Hruby, C.; Soupir, M.

    2012-12-01

    E. coli and enterococci are commonly used as pathogen indicators in surface waters. Along with these indicators, pathogenic Salmonella are prevalent in poultry litter, and have the potential to be transported from land-application areas to tile waters and ultimately to impact waters that are used for drinking-water and recreation. The fate and transport of these bacteria to drainage tiles from application fields, and the correlation of fecal indicator bacteria to pathogens in this setting, is poorly understood. In this field study, samples were obtained from poultry litter, soil, and drainage tile waters below chisel-plowed and no-till cornfields in central Iowa where poultry litter was applied each year in late spring prior to planting. Litter was applied at three different rates; commercial fertilizer with no litter, a low application rate based on the nitrogen requirements of the corn (PL1), and double the low rate (PL2). This site is characterized by low sloping (0-9%) Clarion and Nicollet soils, which are derived from glacial till. Samples were collected from April to September for three years (2010-12) when tiles were flowing. Record high precipitation fell during the sampling period in 2010, while 2011 and 2012 were exceptionally dry years at this location. Grab samples were taken directly from flowing tiles after every rainfall event (>2 cm in less than 24 hours) and samples were collected hourly throughout selected events using an automatic sampling device. Concentrations of E. coli, enterococci and Salmonella spp. were quantified by membrane filtration and growth on selective agars. Peak bacteria concentrations following rainfall events were often one order of magnitude higher in tile waters discharging from no-till plots, despite the smaller size and lower tile flow rates at these plots compared to the chisel-plowed plots. Bacteria concentrations regularly varied by two orders of magnitude in response to rainfall events. Bacteria transport via macropores

  5. Tile-based Level of Detail for the Parallel Age

    SciTech Connect

    Niski, K; Cohen, J D

    2007-08-15

    Today's PCs incorporate multiple CPUs and GPUs and are easily arranged in clusters for high-performance, interactive graphics. We present an approach based on hierarchical, screen-space tiles to parallelizing rendering with level of detail. Adapt tiles, render tiles, and machine tiles are associated with CPUs, GPUs, and PCs, respectively, to efficiently parallelize the workload with good resource utilization. Adaptive tile sizes provide load balancing while our level of detail system allows total and independent management of the load on CPUs and GPUs. We demonstrate our approach on parallel configurations consisting of both single PCs and a cluster of PCs.

  6. Using multivariate analyses to compare subsets of electrodes and potentials within an electrode array for predicting sugar concentrations in mixed solutions.

    SciTech Connect

    Stork, Christopher Lyle; Steen, William Arthur

    2008-04-01

    A non-selective electrode array is presented for the quantification of fructose, galactose, and glucose in mixed solutions. A unique feature of this electrode array relative to other published work is the wide diversity of electrode materials incorporated within the array, being constructed of 41 different metals and metal alloys. Cyclic voltammograms were acquired for solutions containing a single sugar at varying concentrations, and the correlation between current and sugar concentration was calculated as a function of potential and electrode array element. The correlation plots identified potential regions and electrodes that scaled most linearly with sugar concentration, and the number of electrodes used in building predictive models was reduced to 15. Partial least squares regression models relating electrochemical response to sugar concentration were constructed using data from single electrodes and multiple electrodes within the array, and the predictive abilities of these models were rigorously compared using a non-parametric Wilcoxon test. Models using single electrodes (Pt:Rh (90:10) for fructose, Au:Ni (82:18) for galactose, and Au for glucose) were judged to be statistically superior or indistinguishable from those built with multiple electrodes. Additionally, for each sugar, interval partial least squares regression successfully identified a subset of potentials within a given electrode that generated a model of statistically equivalent predictive ability relative to the full potential model. While including data from multiple electrodes offered no benefit in predicting sugar concentration, use of the array afforded the versatility and flexibility of selecting the best single electrode for each sugar.

  7. De novo design of an RNA tile that self-assembles into a homo-octameric nanoprism

    NASA Astrophysics Data System (ADS)

    Yu, Jinwen; Liu, Zhiyu; Jiang, Wen; Wang, Guansong; Mao, Chengde

    2015-01-01

    Rational, de novo design of RNA nanostructures can potentially integrate a wide array of structural and functional diversities. Such nanostructures have great promises in biomedical applications. Despite impressive progress in this field, all RNA building blocks (or tiles) reported so far are not geometrically well defined. They are generally flexible and can only assemble into a mixture of complexes with different sizes. To achieve defined structures, multiple tiles with different sequences are needed. In this study, we design an RNA tile that can homo-oligomerize into a uniform RNA nanostructure. The designed RNA nanostructure is characterized by gel electrophoresis, atomic force microscopy and cryogenic electron microscopy imaging. We believe that development along this line would help RNA nanotechnology to reach the structural control that is currently associated with DNA nanotechnology.

  8. Beautiful Math, Part 5: Colorful Archimedean Tilings from Dynamical Systems.

    PubMed

    Ouyang, Peichang; Zhao, Weiguo; Huang, Xuan

    2015-01-01

    The art of tiling originated very early in the history of civilization. Almost every known human society has made use of tilings in some form or another. In particular, tilings using only regular polygons have great visual appeal. Decorated regular tilings with continuous and symmetrical patterns were widely used in decoration field, such as mosaics, pavements, and brick walls. In science, these tilings provide inspiration for synthetic organic chemistry. Building on previous CG&A “Beautiful Math” articles, the authors propose an invariant mapping method to create colorful patterns on Archimedean tilings (1-uniform tilings). The resulting patterns simultaneously have global crystallographic symmetry and local cyclic or dihedral symmetry. PMID:26594960

  9. Image tiling for a high-resolution helmet-mounted display

    NASA Astrophysics Data System (ADS)

    Kurtz, Russell M.; Pradhan, Ranjit D.; Aye, Tin M.; Chua, Kang-Bin; Tengara, Indra; Tun, Nay; Win, Tin; Holmstedt, Jason; Schindler, Axel; Hergert, Steffen

    2005-05-01

    Head-mounted or helmet-mounted displays (HMDs) have long proven invaluable for many military applications. Integrated with head position, orientation, and/or eye-tracking sensors, HMDs can be powerful tools for training. For such training applications as flight simulation, HMDs need to be lightweight and compact with good center-of-gravity characteristics, and must display realistic full-color imagery with eye-limited resolution and large field-of-view (FOV) so that the pilot sees a truly realistic out-the-window scene. Under bright illumination, the resolution of the eye is ~300 μr (1 arc-min), setting the minimum HMD resolution. There are several methods of achieving this resolution, including increasing the number of individual pixels on a CRT or LCD display, thereby increasing the size, weight, and complexity of the HMD; dithering the image to provide an apparent resolution increase at the cost of reduced frame rate; and tiling normal resolution subimages into a single, larger high-resolution image. Physical Optics Corporation (POC) is developing a 5120 × 4096 pixel HMD covering 1500 × 1200 mr with resolution of 300 μr by tiling 20 subimages, each of which has a resolution of 1024 × 1024 pixels, in a 5 × 4 array. We present theory and results of our preliminary development of this HMD, resulting in a 4k × 1k image tiled from 16 subimages, each with resolution 512 × 512, in an 8 × 2 array.

  10. Dissolved organic carbon losses from tile drained agroecosystems.

    PubMed

    Ruark, Matthew D; Brouder, Sylvie M; Turco, Ronald F

    2009-01-01

    Artificial subsurface drainage is commonly used in midwestern agriculture and drainage losses of dissolved organic carbon (DOC) from such systems are an under-quantified portion of the terrestrial carbon (C) cycle. The objectives of this study were to determine the effect of common agricultural management practices on DOC losses from subsurface tile drains and to assess patterns of loss as a function of year, time of year, and drainflow. Daily drainflow was collected across six water years (1999-2004) from a restored prairie grass system and cropping systems which include continuous corn (Zea mays L.) and corn-soybean [Glycine max (L.) Merr.] rotations fertilized with urea-ammonium-nitrate (UAN) or swine (Sus scrofa) manure lagoon effluent. The DOC concentrations in tile drainflow were low, typically <2 mg L(-1). Yearly DOC losses, which ranged from 1.78 to 8.61 kg ha(-1), were not affected by management practices and were small compared to organic C inputs. Spring application of lagoon effluent increased yearly flow-weighted (FW)-DOC concentrations relative to other cropping systems in three of the years and increased monthly FW-DOC concentrations when drainflow occurred within 1 mo of application. Drainflow was significantly and positively correlated with DOC loss. Drainflow also affected DOC concentrations as greater 6-yr cumulative drainflow was associated with lower 6-yr FW-DOC concentrations and greater daily drainflow was associated with higher daily DOC concentrations. Our results indicate that lagoon effluent application and fertilizer N rates do not affect long-term losses of DOC from tile drains and that drainflow is the main driver of DOC losses. PMID:19398518

  11. Ballistic performance of polyurea-coated armor grade ceramic tiles

    NASA Astrophysics Data System (ADS)

    Samiee, Ahsan; Isaacs, Jon; Nemat-Nasser, Sia

    2010-04-01

    The use of ceramics as energy absorbents has been studied by many researchers and some improvements in the ballistic performance of ceramic tiles have been made by coating them with different classes of materials (e.g. E-glass/epoxy, carbon-fiber/epoxy, etc.). Using ceramics for energy absorbing applications leads to a significant weight reduction of the system. Therefore, any modification to the ceramic configuration in the system which leads to more energy absorption with the same or less areal density is significant. On the other hand, polyurea has been proved to be an excellent energy dissipating agent in many applications. Inspired by this, we are studying the effect of coating ceramics with polyurea and other materials, on the energy absorption and ballistic performance of the resulting ceramic-based composites. In this study, we investigate the effect of polyurea on ballistic efficiency of ceramic tiles. To this end, we have performed a set of penetration tests on polyurea-ceramic composites. In our experiments, a high velocity projectile is propelled to impact and perforate the ceramic-polyurea composite. The velocity and mass of the projectile are measured before and after the penetration. The change in the kinetic energy of the projectile is evaluated and compared for different polyurea-ceramic configurations (e.g., polyurea on front face, polyurea on back face, polyurea between two ceramic tiles, etc.). The experimental results suggest that polyurea is not as effective as other restraining materials such as E-glass/epoxy and carbon-fiber/epoxy.

  12. A genome-wide analysis of array-based comparative genomic hybridization (CGH) data to detect intra-species variations and evolutionary relationships.

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Array-based comparative genomics hybridization (CGH) has gained prevalence as a technique of choice for the detection of structural variations in the genome. In this study, we propose a novel genome-wide method of classification using CGH data, in order to reveal putative phylogenetic relationships ...

  13. Spectrum of Cytogenomic Abnormalities Revealed by Array Comparative Genomic Hybridization on Products of Conception Culture Failure and Normal Karyotype Samples.

    PubMed

    Zhou, Qinghua; Wu, Shen-Yin; Amato, Katherine; DiAdamo, Autumn; Li, Peining

    2016-03-20

    Approximately 30% of pregnancies after implantation end up in spontaneous abortions, and 50% of them are caused by chromosomal abnormalities. However, the spectrum of genomic copy number variants (CNVs) in products of conception (POC) and the underlying gene-dosage-sensitive mechanisms causing spontaneous abortions remain largely unknown. In this study, array comparative genomic hybridization (aCGH) analysis was performed as a salvage procedure for 128 POC culture failure (POC-CF) samples and as a supplemental procedure for 106 POC normal karyotype (POC-NK) samples. Chromosomal abnormalities were detected in 10% of POC-CF and pathogenic CNVs were detected in 3.9% of POC-CF and 5.7% of POC-NK samples. Compiled results from this study and relevant case series through a literature review demonstrated an abnormality detection rate (ADR) of 35% for chromosomal abnormalities in POC-CF samples, 3.7% for pathogenic CNVs in POC-CF samples, and 4.6% for pathogenic CNVs in POC-NK samples. Ingenuity Pathway Analysis (IPA) was performed on the genes from pathogenic CNVs found in POC samples. The denoted primary gene networks suggested that apoptosis and cell proliferation pathways are involved in miscarriage. In summary, a similar spectrum of cytogenomic abnormalities was observed in POC culture success and POC-CF samples. A threshold effect correlating the number of dosage-sensitive genes in a chromosome with the observed frequency of autosomal trisomy is proposed. A rationalized approach using firstly fluorescence in situ hybridization (FISH) testing with probes of chromosomes X/Y/18, 13/21, and 15/16/22 for common aneuploidies and polyploidies and secondly aCGH for other cytogenomic abnormalities is recommended for POC-CF samples. PMID:27020032

  14. Low Noise Performance Perspectives Of Wideband Aperture Phased Arrays

    NASA Astrophysics Data System (ADS)

    Woestenburg, E. E. M.; Kuenen, J. C.

    2004-06-01

    A general analysis of phased array noise properties and measurements, applied to one square meter tiles of the Thousand Element Array (THEA), has resulted in a procedure to define the noise budget for a THEA-tile (Woestenburg and Dijkstra, 2003). The THEA system temperature includes LNA and receiver noise, antenna connecting loss, noise coupling between antenna elements and other possible contributions. This paper discusses the various noise contributions to the THEA system temperature and identifies the areas where improvement can be realized. We will present better understanding of the individual noise contributions using measurements and analysis of single antenna/receiver elements. An improved design for a 1-m2 Low Noise Tile (LNT) will be discussed and optimized low noise performance for the LNT is presented. We will also give future perspectives of the noise performance for such tiles, in relation to the requirements for SKA in the 1 GHz frequency range.

  15. Tiling Assembly: a new tool for reference annotation-independent transcript assembly and novel gene identification by RNA-sequencing

    PubMed Central

    Watanabe, Kenneth A.; Homayouni, Arielle; Tufano, Tara; Lopez, Jennifer; Ringler, Patricia; Rushton, Paul; Shen, Qingxi J.

    2015-01-01

    Annotation of the rice (Oryza sativa) genome has evolved significantly since release of its draft sequence, but it is far from complete. Several published transcript assembly programmes were tested on RNA-sequencing (RNA-seq) data to determine their effectiveness in identifying novel genes to improve the rice genome annotation. Cufflinks, a popular assembly software, did not identify all transcripts suggested by the RNA-seq data. Other assembly software was CPU intensive, lacked documentation, or lacked software updates. To overcome these shortcomings, a heuristic ab initio transcript assembly algorithm, Tiling Assembly, was developed to identify genes based on short read and junction alignment. Tiling Assembly was compared with Cufflinks to evaluate its gene-finding capabilities. Additionally, a pipeline was developed to eliminate false-positive gene identification due to noise or repetitive regions in the genome. By combining Tiling Assembly and Cufflinks, 767 unannotated genes were identified in the rice genome, demonstrating that combining both programmes proved highly efficient for novel gene identification. We also demonstrated that Tiling Assembly can accurately determine transcription start sites by comparing the Tiling Assembly genes with their corresponding full-length cDNA. We applied our pipeline to additional organisms and identified numerous unannotated genes, demonstrating that Tiling Assembly is an organism-independent tool for genome annotation. PMID:26341416

  16. Microbial Volatile Organic Compound Emissions from Stachybotrys chartarum growing on Gypsum Wallboard and Ceiling tile

    EPA Science Inventory

    This study compared seven toxigenic strains of S. chartarum found in water-damaged buildings to characterize the microbial volatile organic compound (MVOC) emissions profile while growing on gypsum wallboard (W) and ceiling tile (C) coupons. The inoculated coupons with their sub...

  17. Rye Cover Crop and Gamagrass Strip Effects on NO3 Concentration and Load in Tile Drainage

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A significant portion of the nitrate(NO3) from agricultural fields that contaminates surface waters in the Midwest Corn Belt is transported to streams or rivers by subsurface drainage systems or tiles. We compared two cropping system modifications for NO3 concentration and load in subsurface drainag...

  18. Anosov Diffeomorphisms and {γ}-Tilings

    NASA Astrophysics Data System (ADS)

    Almeida, João P.; Pinto, Alberto A.

    2016-07-01

    We consider a toral Anosov automorphism {G_γ:{mathbb{T}}_γto{mathbb{T}}_γ} given by {G_γ(x,y)=(ax+y,x)} in the { < v,w > } base, where {ainmathbb{N} backslash\\{1\\}}, {γ=1/(a+1/(a+1/ldots))}, {v=(γ,1)} and {w=(-1,γ)} in the canonical base of {{mathbb{R}}^2} and {{mathbb{T}}_γ={mathbb{R}}^2/(v{mathbb{Z}} × w{mathbb{Z}})}. We introduce the notion of {γ}-tilings to prove the existence of a one-to-one correspondence between (i) marked smooth conjugacy classes of Anosov diffeomorphisms, with invariant measures absolutely continuous with respect to the Lebesgue measure, that are in the isotopy class of {G_γ}; (ii) affine classes of {γ}-tilings; and (iii) {γ}-solenoid functions. Solenoid functions provide a parametrization of the infinite dimensional space of the mathematical objects described in these equivalences.

  19. On Some New Properties of Binary Tilings

    NASA Astrophysics Data System (ADS)

    Aviram, Ira; Kleman, Maurice

    1996-05-01

    We show that one of the binary tilings introduced by Lançon & Billard (LB1) tends asymptotically towards an “universal” random tiling of decagonal symmetry, whatever the starting tiling may be, after an infinite sequence of random decorations preserving the LB1 structural properties; the successive steps of the sequence are described in terms of random substitution matrices. The universal character of the asymptotic tiling reveals in particular in: the existence of a well-defined intensive variable α_infty which measures the proportion of pairs of nearest neighbors of atoms of different species which belong to pairs o contiguous “fat” tiles F, its very characteristic Fourier transform, and finite size fluctuations. Our results rely on a series of extensive Monte-Carlo simulations and on analytic calculations of the statistics of the tilings (e.g. α_n) at different stages n of the substitution process. All these calculations concerns the sole entropy properties, which simplification is justified by the well known fact that binary tilings are degenerate for Lennard-Jones interactions between nearest-neighbors. A direct calculation of the entropy yields a value of α_infty slightly different from the value obtained by the analytic method above, by an amount of ≈ 1%. We suggest that the difference is due to long-range correlations which are not taken into account in the direct calculation as well as some specific ergodicity properties of our “microcanonical” ensemble of tilings realizations, which reveal for example in the non-abelian properties of the finite size fluctuations, and which remain to be studied in any case. Nous montrons que l'un des pavages binaires de Lançon & Billard (LB1) a une limite asymptotique “universelle”, c'est-à-dire ne dépendant pas du pavage de départ, sous l'effet d'une séquence infinie de substitutions aléatoires (décrites par une matrice de transfert aléatoire) qui préservent son caractère LB1. Le caract

  20. Firing ceramic tiles in solar energy equipment

    SciTech Connect

    Pasichnyi, V.V.; Berezhetskaya, V.Ya.; Chop, Yu.I.; Kashket, G.I.

    1987-03-01

    In the interest of satisfying the growing demand for glazed ceramic tiles and conserving the natural gas ordinarily used to fire them, the authors assess the feasibility of using a solar kiln for the process. Their design incorporates a parabolic reflector and a tracking system to continuously focus radiant solar energy on the tile. Their energy analysis includes such factors as solar thermal input, radiant heat transfer, and heat flow, the relationship between the firing time and the heat flow density, and the surface quality of the glaze and colorizer. Their results indicate that when the heat flow density rises above a level at which the specific expenditure of heat is no longer dependent on the color of the pigment, this expenditure or input comes to a quarter of what is currently needed using existing technologies and fuels.

  1. The DELPHI small angle tile calorimeter

    SciTech Connect

    Alvsvaag, S.J.; Maeland, O.A.; Klovning, A.

    1995-08-01

    The Small angle TIle Calorimeter (STIC) provides calorimetric coverage in the very forward region for the DELPHI experiment at the CERN LEP collider. A veto system composed of two scintillator layers allows to trigger on single photon events and provides e{minus}{gamma} separation. The authors present here some results of extensive measurements performed on part of the calorimeter and the veto system in the CERN test beams prior to installation and report on the performance achieved during the 1994 LEP run.

  2. FITS Tile Compression in the NOAO DMS

    NASA Astrophysics Data System (ADS)

    Stobie, E.; Seaman, R.; Barg, I.

    2009-09-01

    The NOAO Data Management system (DMS) captures data from eleven NOAO and partner telescopes and transports these data from three mountaintops to replicate them between three data centers both North and South of the equator. Image files are annotated, remediated, ingested, and persisted through interfaces of the NOAO Science Archive. Wide-field optical and infrared images flow out of the archive, through the NOAO High Performance Pipeline creating several new data products that flow back into the archive. Raw, pipeline-reduced, and survey data products, both proprietary and post-proprietary, are made available through the NOAO Portal using VO standards and services. Each of these several steps requires access to both image data and metadata in the form of image header keywords. Measures of storage efficiency and throughput characterize performance, cost, schedule, and risk in a matrix across all telescopes and all subsystems. Anything that impedes access to data or metadata diminishes throughput, thus slowing schedules, increasing costs, revealing risks, and adversely affecting performance. The familiar gzip compression algorithm is often used to increase data storage efficiency. However, gzip actually reduces throughput due to initial and recurring overhead of compression and later uncompression. For example, if metadata for an image require remediation, the whole image must be compressed, uncompressed, and compressed again. By contrast, the FITS tile convention using the Rice algorithm achieves about 40% better compression than gzip in just one-third the time. Image headers remain readable such that images often need never be uncompressed at all; metadata can be simply edited in place. Further, a library such as CFITSIO can support tile compression as a native image format. The pixel tiling feature means that for applications such as a cutout service, only the tiles overlapping the desired image section need be uncompressed.

  3. Defining ploidy-specific thresholds in array comparative genomic hybridization to improve the sensitivity of detection of single copy alterations in cell lines.

    PubMed

    Ng, Grace; Huang, Jingxiang; Roberts, Ian; Coleman, Nicholas

    2006-09-01

    Array comparative genomic hybridization (CGH) is being widely used to screen for recurrent genomic copy number alterations in neoplasms, with imbalances typically detected through the application of gain and loss thresholds. Review of array CGH publications for the year 2005 showed that a wide range of thresholds are used. However, the effect of sample ploidy on the sensitivity of these thresholds for single copy alterations (SCAs) has not been evaluated. Here, we describe a method to evaluate the detection accuracy of thresholds for detecting SCAs in cell line array CGH data. By applying a hidden Markov model-based method, we segmented array CGH data from well-karyotyped cell lines and generated ploidy-specific sensitivity-specificity plots, from which we identified optimum thresholds relevant to sample ploidy. We demonstrate that commonly used nonploidy-specific thresholds are suboptimal in their ability to call SCAs, particularly when applied to hypertriploid or tetraploid cell lines. We conclude that the use of ploidy-specific thresholds improves the sensitivity of thres-hold-based array CGH for detecting SCAs in cell lines. Because polyploidy is a common feature of cancer cells, the application of ploidy-specific thresholds to cell lines (and potentially to clinical samples) may improve the detection sensitivity of SCAs of biological significance. PMID:16931585

  4. Eating in the absence of hunger in adolescents: intake after a large-array meal compared with that after a standardized meal123

    PubMed Central

    Tanofsky-Kraff, Marian; Zocca, Jaclyn M; Courville, Amber; Kozlosky, Merel; Columbo, Kelli M; Wolkoff, Laura E; Brady, Sheila M; Crocker, Melissa K; Ali, Asem H; Yanovski, Susan Z; Yanovski, Jack A

    2010-01-01

    Background: Eating in the absence of hunger (EAH) is typically assessed by measuring youths’ intake of palatable snack foods after a standard meal designed to reduce hunger. Because energy intake required to reach satiety varies among individuals, a standard meal may not ensure the absence of hunger among participants of all weight strata. Objective: The objective of this study was to compare adolescents’ EAH observed after access to a very large food array with EAH observed after a standardized meal. Design: Seventy-eight adolescents participated in a randomized crossover study during which EAH was measured as intake of palatable snacks after ad libitum access to a very large array of lunch-type foods (>10,000 kcal) and after a lunch meal standardized to provide 50% of the daily estimated energy requirements. Results: The adolescents consumed more energy and reported less hunger after the large-array meal than after the standardized meal (P values < 0.001). They consumed ≈70 kcal less EAH after the large-array meal than after the standardized meal (295 ± 18 compared with 365 ± 20 kcal; P < 0.001), but EAH intakes after the large-array meal and after the standardized meal were positively correlated (P values < 0.001). The body mass index z score and overweight were positively associated with EAH in both paradigms after age, sex, race, pubertal stage, and meal intake were controlled for (P values ≤ 0.05). Conclusion: EAH is observable and positively related to body weight regardless of whether youth eat in the absence of hunger from a very large-array meal or from a standardized meal. This trial was registered at clinicaltrials.gov as NCT00631644. PMID:20720255

  5. Performance of the ATLAS Tile Calorimeter

    NASA Astrophysics Data System (ADS)

    Cole, Stephe

    2013-04-01

    The Tile Calorimeter is the central section (0 < |η| < 1.7) of the ATLAS hadronic calorimeter. It is a key detector for the measurement of hadrons, jets, tau leptons decaying hadronically, and missing transverse energy. Because of its very good signal to noise ratio it is also useful for the identification and reconstruction of muons. The calorimeter consists of thin steel plates and 460,000 scintillating tiles configured into 4900 cells, each viewed by two photomultipliers. The calorimeter response is monitored to better than 1% using radioactive source, laser, and electronic charge injection systems. The calibration and performance of the calorimeter have been established through test beam measurements, cosmic ray muons and the large sample of pp collisions acquired during 2011 and 2012. Results on the calorimeter performance will be presented, including the absolute energy scale, time resolution, and associated stabilities. These results demonstrate that the Tile Calorimeter is performing well within the design requirements and is giving essential input to the physics results.

  6. Foam-on-Tile Damage Model

    NASA Technical Reports Server (NTRS)

    Koharchik, Michael; Murphy, Lindsay; Parker, Paul

    2012-01-01

    An impact model was developed to predict how three specific foam types would damage the Space Shuttle Orbiter insulating tiles. The inputs needed for the model are the foam type, the foam mass, the foam impact velocity, the foam impact incident angle, the type being impacted, and whether the tile is new or aged (has flown at least one mission). The model will determine if the foam impact will cause damage to the tile. If it can cause damage, the model will output the damage cavity dimensions (length, depth, entry angle, exit angle, and sidewall angles). It makes the calculations as soon as the inputs are entered (less than 1 second). The model allows for the rapid calculation of numerous scenarios in a short time. The model was developed from engineering principles coupled with significant impact testing (over 800 foam impact tests). This model is applicable to masses ranging from 0.0002 up to 0.4 pound (0.09 up to 181 g). A prior tool performed a similar function, but was limited to the assessment of a small range of masses and did not have the large test database for verification. In addition, the prior model did not provide outputs of the cavity damage length, entry angle, exit angle, or sidewall angles.

  7. Chunking of Large Multidimensional Arrays

    SciTech Connect

    Rotem, Doron; Otoo, Ekow J.; Seshadri, Sridhar

    2007-02-28

    Data intensive scientific computations as well on-lineanalytical processing applications as are done on very large datasetsthat are modeled as k-dimensional arrays. The storage organization ofsuch arrays on disks is done by partitioning the large global array intofixed size hyper-rectangular sub-arrays called chunks or tiles that formthe units of data transfer between disk and memory. Typical queriesinvolve the retrieval of sub-arrays in a manner that accesses all chunksthat overlap the query results. An important metric of the storageefficiency is the expected number of chunks retrieved over all suchqueries. The question that immediately arises is "what shapes of arraychunks give the minimum expected number of chunks over a query workload?"In this paper we develop two probabilistic mathematical models of theproblem and provide exact solutions using steepest descent and geometricprogramming methods. Experimental results, using synthetic workloads onreal life data sets, show that our chunking is much more efficient thanthe existing approximate solutions.

  8. High-resolution mapping of genotype-phenotype relationships in cridu chat syndrome using array comparative genomic hybridization

    SciTech Connect

    Zhang, Xiaoxiao; Snijders, Antoine; Segraves, Richard; Zhang,Xiuqing; Niebuhr, Anita; Albertson, Donna; Yang, Huanming; Gray, Joe; Niebuhr, Erik; Bolund, Lars; Pinkel, Dan

    2007-07-03

    We have used array comparative genomic hybridization to map DNA copy-number changes in 94 patients with cri du chat syndrome who had been carefully evaluated for the presence of the characteristic cry, speech delay, facial dysmorphology, and level of mental retardation (MR). Most subjects had simple deletions involving 5p (67 terminal and 12 interstitial). Genotype-phenotype correlations localized the region associated with the cry to 1.5 Mb in distal 5p15.31, between bacterial artificial chromosomes (BACs) containing markers D5S2054 and D5S676; speech delay to 3.2 Mb in 5p15.32-15.33, between BACs containing D5S417 and D5S635; and the region associated with facial dysmorphology to 2.4 Mb in 5p15.2-15.31, between BACs containing D5S208 and D5S2887. These results overlap and refine those reported in previous publications. MR depended approximately on the 5p deletion size and location, but there were many cases in which the retardation was disproportionately severe, given the 5p deletion. All 15 of these cases, approximately two-thirds of the severely retarded patients, were found to have copy-number aberrations in addition to the 5p deletion. Restriction of consideration to patients with only 5p deletions clarified the effect of such deletions and suggested the presence of three regions, MRI-III, with differing effect on retardation. Deletions including MRI, a 1.2-Mb region overlapping the previously defined cri du chat critical region but not including MRII and MRIII, produced a moderate level of retardation. Deletions restricted to MRII, located just proximal to MRI, produced a milder level of retardation, whereas deletions restricted to the still-more proximal MRIII produced no discernible phenotype. However, MR increased as deletions that included MRI extended progressively into MRII and MRIII, and MR became profound when all three regions were deleted.

  9. A High-Resolution Tile-Based Approach for Classifying Biological Regions in Whole-Slide Histopathological Images

    PubMed Central

    Hoffman, R.A.; Kothari, S.; Phan, J.H.; Wang, M.D.

    2016-01-01

    Computational analysis of histopathological whole slide images (WSIs) has emerged as a potential means for improving cancer diagnosis and prognosis. However, an open issue relating to the automated processing of WSIs is the identification of biological regions such as tumor, stroma, and necrotic tissue on the slide. We develop a method for classifying WSI portions (512x512-pixel tiles) into biological regions by (1) extracting a set of 461 image features from each WSI tile, (2) optimizing tile-level prediction models using nested cross-validation on a small (600 tile) manually annotated tile-level training set, and (3) validating the models against a much larger (1.7x106 tile) data set for which ground truth was available on the whole-slide level. We calculated the predicted prevalence of each tissue region and compared this prevalence to the ground truth prevalence for each image in an independent validation set. Results show significant correlation between the predicted (using automated system) and reported biological region prevalences with p < 0.001 for eight of nine cases considered.

  10. Military Curriculum Materials for Vocational and Technical Education. Builders School, Ceramic Tile Setting 3-9.

    ERIC Educational Resources Information Center

    Ohio State Univ., Columbus. National Center for Research in Vocational Education.

    This course, for individualized or group instruction on ceramic tile setting, was developed from military sources for use in vocational education. The course provides students with skills in mortar preparation, surface preparation, tile layout planning, tile setting, tile cutting, and the grouting of tile joints. Both theory and shop assignments…

  11. Design, fabrication, and tests of a metallic shell tile thermal protection system for space transportation

    NASA Technical Reports Server (NTRS)

    Macconochie, Ian O.; Kelly, H. Neale

    1989-01-01

    A thermal protection tile for earth-to-orbit transports is described. The tiles consist of a rigid external shell filled with a flexible insulation. The tiles tend to be thicker than the current Shuttle rigidized silica tiles for the same entry heat load but are projected to be more durable and lighter. The tiles were thermally tested for several simulated entry trajectories.

  12. 55. QUARRY TILE CUTTERS, SECOND FLOOR, NORTH WING. WORKERS PRESSED ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    55. QUARRY TILE CUTTERS, SECOND FLOOR, NORTH WING. WORKERS PRESSED THE CUTTERS INTO SLABS OF CLAY, LIFTED THEM ONTO DRYING BOARDS AND PRESSED THE PLUNGERS TO RELEASE THE CUT TILES. REPRODUCTIONS CUTTERS ARE NOT USED IN PRODUCTION. WOODEN FORMS FOR PRODUCING CLAY SLABS WITH ROLLING PINS REST AGAINST THE WALL. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

  13. NASA TileWorld manual (system version 2.2)

    NASA Technical Reports Server (NTRS)

    Philips, Andrew B.; Bresina, John L.

    1991-01-01

    The commands are documented of the NASA TileWorld simulator, as well as providing information about how to run it and extend it. The simulator, implemented in Common Lisp with Common Windows, encodes a particular range in a spectrum of domains, for controllable research experiments. TileWorld consists of a two dimensional grid of cells, a set of polygonal tiles, and a single agent which can grasp and move tiles. In addition to agent executable actions, there is an external event over which the agent has not control; this event correspond to a 'gust of wind'.

  14. Enthalpy arrays

    NASA Astrophysics Data System (ADS)

    Torres, Francisco E.; Kuhn, Peter; de Bruyker, Dirk; Bell, Alan G.; Wolkin, Michal V.; Peeters, Eric; Williamson, James R.; Anderson, Gregory B.; Schmitz, Gregory P.; Recht, Michael I.; Schweizer, Sandra; Scott, Lincoln G.; Ho, Jackson H.; Elrod, Scott A.; Schultz, Peter G.; Lerner, Richard A.; Bruce, Richard H.

    2004-06-01

    We report the fabrication of enthalpy arrays and their use to detect molecular interactions, including protein-ligand binding, enzymatic turnover, and mitochondrial respiration. Enthalpy arrays provide a universal assay methodology with no need for specific assay development such as fluorescent labeling or immobilization of reagents, which can adversely affect the interaction. Microscale technology enables the fabrication of 96-detector enthalpy arrays on large substrates. The reduction in scale results in large decreases in both the sample quantity and the measurement time compared with conventional microcalorimetry. We demonstrate the utility of the enthalpy arrays by showing measurements for two protein-ligand binding interactions (RNase A + cytidine 2'-monophosphate and streptavidin + biotin), phosphorylation of glucose by hexokinase, and respiration of mitochondria in the presence of 2,4-dinitrophenol uncoupler.

  15. Analyses of Genotypes and Phenotypes of Ten Chinese Patients with Wolf-Hirschhorn Syndrome by Multiplex Ligation-dependent Probe Amplification and Array Comparative Genomic Hybridization

    PubMed Central

    Yang, Wen-Xu; Pan, Hong; Li, Lin; Wu, Hai-Rong; Wang, Song-Tao; Bao, Xin-Hua; Jiang, Yu-Wu; Qi, Yu

    2016-01-01

    Background: Wolf-Hirschhorn syndrome (WHS) is a contiguous gene syndrome that is typically caused by a deletion of the distal portion of the short arm of chromosome 4. However, there are few reports about the features of Chinese WHS patients. This study aimed to characterize the clinical and molecular cytogenetic features of Chinese WHS patients using the combination of multiplex ligation-dependent probe amplification (MLPA) and array comparative genomic hybridization (array CGH). Methods: Clinical information was collected from ten patients with WHS. Genomic DNA was extracted from the peripheral blood of the patients. The deletions were analyzed by MLPA and array CGH. Results: All patients exhibited the core clinical symptoms of WHS, including severe growth delay, a Greek warrior helmet facial appearance, differing degrees of intellectual disability, and epilepsy or electroencephalogram anomalies. The 4p deletions ranged from 2.62 Mb to 17.25 Mb in size and included LETM1, WHSC1, and FGFR3. Conclusions: The combined use of MLPA and array CGH is an effective and specific means to diagnose WHS and allows for the precise identification of the breakpoints and sizes of deletions. The deletion of genes in the WHS candidate region is closely correlated with the core WHS phenotype. PMID:26960370

  16. Real-time implementation of distortion corrections for a tiled EMCCD-based Solid State X-ray Image Intensifier (SSXII)

    PubMed Central

    Keleshis, C; Hoffmann, KR; Lee, J; Hamwi, H; Wang, W; Ionita, CN; Bednarek, DR; Verevkin, A.; Rudin, S

    2009-01-01

    The new Solid State X-ray Image Intensifier (SSXII) is being designed based on a modular imaging array of Electron Multiplying Charge Couple Devices (EMCCD). Each of the detector modules consists of a CsI(Tl) phosphor coupled to a fiber-optic plate, a fiber-optic taper (FOT), and an EMCCD sensor with its electronics. During the optical coupling and alignment of the modules into an array form, small orientation misalignments, such as rotation and translation of the EMCCD sensors, are expected. In addition, barrel distortion will result from the FOTs. Correction algorithms have been developed by our group for all the above artifacts. However, it is critical for the system’s performance to correct these artifacts in real-time (30 fps). To achieve this, we will use two-dimensional Look-Up-Tables (LUT) (each for x and y coordinates), which map the corrected pixel locations to the acquired-image pixel locations. To evaluate the feasibility of this approach, this process is simulated making use of parallel coding techniques to allow real-time distortion corrections for up to sixteen modules when a standard quad processor is used. The results of this simulation confirm that tiled field-of-views (FOV) comparable with those of flat panel detectors can be generated in ~17 ms (>30 fps). The increased FOV enabled through correction of tiled images, combined with the EMCCD characteristics of low noise, negligible lag and high sensitivity, should make possible the practical use of the SSXII with substantial advantages over conventional clinical systems. PMID:19777121

  17. Complex tiling patterns in liquid crystals

    PubMed Central

    Tschierske, C.; Nürnberger, C.; Ebert, H.; Glettner, B.; Prehm, M.; Liu, F.; Zeng, X.-B.; Ungar, G.

    2012-01-01

    In this account recent progress in enhancing the complexity of liquid crystal self-assembly is highlighted. The discussed superstructures are formed mainly by polyphilic T-shaped and X-shaped molecules composed of a rod-like core, tethered with glycerol units at both ends and flexible non-polar chain(s) in lateral position, but also related inverted molecular structures are considered. A series of honeycomb phases composed of polygonal cylinders ranging from triangular to hexagonal, followed by giant cylinder honeycombs is observed for ternary T-shaped polyphiles on increasing the size of the lateral chain(s). Increasing the chain size further leads to new modes of lamellar organization followed by three-dimensional and two-dimensional structures incorporating branched and non-branched axial rod-bundles. Grafting incompatible chains to opposite sides of the rod-like core leads to quaternary X-shaped polyphiles. These form liquid crystalline honeycombs where different cells are filled with different material. Projected on an Euclidian plane, all honeycomb phases can be described either by uniformly coloured Archimedean and Laves tiling patterns (T-shaped polyphiles) or as multi-colour tiling patterns (X-shaped polyphiles). It is shown that geometric frustration, combined with the tendency to segregate incompatible chains into different compartments and the need to find a periodic tiling pattern, leads to a significant increase in the complexity of soft self-assembly. Mixing of different chains greatly enhances the number of possible ‘colours’ and in this way, periodic structures comprising up to seven distinct compartments can be generated. Relations to biological self-assembly are discussed shortly. PMID:24098852

  18. Deuterium trapping and release in JET ITER-like wall divertor tiles

    NASA Astrophysics Data System (ADS)

    Likonen, J.; Heinola, K.; De Backer, A.; Koivuranta, S.; Hakola, A.; Ayres, C. F.; Baron-Wiechec, A.; Coad, P.; Matthews, G. F.; Mayer, M.; Widdowson, A.; Contributors, JET

    2016-02-01

    A selected set of samples from JET-ILW divertor tiles exposed in 2011-2012 has been analysed using thermal desorption spectrometry (TDS). The highest amount of deuterium was found on the regions with the thickest deposited layers, i.e. on the horizontal (apron) part and on the top part of Tile 1, which resides deep in the scrape-off layer. Outer divertor Tiles 6, 7 and 8 had nearly an order of magnitude less deuterium. The co-deposited layers on the JET tiles and the W coatings contain C, O and Ni impurities which may change the desorption properties. The D2 signals in the TDS spectra were convoluted and the positions of the peaks were compared with the Be and C amounts but no correlations between them were found. The remaining fractions of D in the analysed samples at ITER baking temperature 350 °C are rather high implying that co-deposited films may be difficult to be de-tritiated.

  19. An alternative method for the TileCal signal detection and amplitude estimation

    NASA Astrophysics Data System (ADS)

    Sotto-Maior Peralva, B.; ATLAS Collaboration

    2012-06-01

    The Tile Barrel Calorimeter (TileCal) is the central section of the hadronic calorimeter of ATLAS. It is a key detector for the reconstruction of hadrons, jets, taus and missing transverse energy and it assists the muon measurements due to a low signal-to-noise ratio. The energy deposited in each cell is read out by two electronic channels for redundancy and is estimated by reconstructing the amplitude of the digitized signal pulse sampled every 25 ns. This work presents an alternative approach for TileCal signal detection and amplitude estimation under low signal-to-noise ratio (SNR) conditions, exploring the applicability of a Matched Filter. The proposed method is compared to the Optimal Filter algorithm, that is currently being used at TileCal for energy reconstruction. The results for a simulated data set showed that for conditions where the signal pedestal could be considered stationary, the proposed method achieves a better SNR performance than the Optimal Filter technique.

  20. Evaluation of angle dependence in spectral emissivity of ceramic tiles measured by FT-IR

    NASA Astrophysics Data System (ADS)

    Kobayashi, C.; Ogasawara, N.; Yamada, H.; Yamada, S.; Kikuchi, T.

    2015-05-01

    Ceramic tiles are widely used for building walls. False detections are caused in inspections by infrared thermography because of the infrared reflection and angle dependence of emissivity. As the first problem, ceramic tile walls are influenced from backgrounds reflection. As the second problem, in inspection for tall buildings, the camera angles are changed against the height. Thus, to reveal the relation between the emissivity and angles is needed. However, there is very little data about it. It is impossible to decrease the false detection on ceramic tile walls without resolving these problems; background reflection and angle dependence of emissivity. In this study, the angle problem was investigated. The purpose is to establish a revision method in the angle dependence of the emissivity for infrared thermography. To reveal the relation between the emissivity and angles, the spectral emissivity of a ceramic tile at various angles was measured by FT-IR and infrared thermographic instrument. These two experimental results were compared with the emissivity-angle curves from the theoretical formula. In short wavelength range, the two experimental results showed similar behavior, but they did not agree with the theoretical curve. This will be the subject of further study. In long wavelength range, the both experimental results almost obeyed the theoretical curve. This means that it is possible to revise the angle dependence of spectral emissivity, for long wavelength range.

  1. Symmetries and color symmetries of a family of tilings with a singular point.

    PubMed

    Evidente, Imogene F; Felix, Rene P; Loquias, Manuel Joseph C

    2015-11-01

    Tilings with a singular point are obtained by applying conformal maps on regular tilings of the Euclidean plane and their symmetries are determined. The resulting tilings are then symmetrically colored by applying the same conformal maps on colorings of regular tilings arising from sublattice colorings of the centers of the tiles. In addition, conditions are determined in order that the coloring of a tiling with singularity that is obtained in this manner is perfect. PMID:26522407

  2. 49. TILE PACKING AREA AND APPRENTICE WORKSPACE, SECOND FLOOR, SOUTH ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    49. TILE PACKING AREA AND APPRENTICE WORKSPACE, SECOND FLOOR, SOUTH END OF EAST WING. THE SKYLIGHT, ADDED IN 1976. COVERS A ROOF OPENING LEFT FOR THE CHIMNEY OF A POSSIBLE THIRD BISCUIT KILN. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

  3. Highly Symmetric and Congruently Tiled Meshes for Shells and Domes

    PubMed Central

    Rasheed, Muhibur; Bajaj, Chandrajit

    2016-01-01

    We describe the generation of all possible shell and dome shapes that can be uniquely meshed (tiled) using a single type of mesh face (tile), and following a single meshing (tiling) rule that governs the mesh (tile) arrangement with maximal vertex, edge and face symmetries. Such tiling arrangements or congruently tiled meshed shapes, are frequently found in chemical forms (fullerenes or Bucky balls, crystals, quasi-crystals, virus nano shells or capsids), and synthetic shapes (cages, sports domes, modern architectural facades). Congruently tiled meshes are both aesthetic and complete, as they support maximal mesh symmetries with minimal complexity and possess simple generation rules. Here, we generate congruent tilings and meshed shape layouts that satisfy these optimality conditions. Further, the congruent meshes are uniquely mappable to an almost regular 3D polyhedron (or its dual polyhedron) and which exhibits face-transitive (and edge-transitive) congruency with at most two types of vertices (each type transitive to the other). The family of all such congruently meshed polyhedra create a new class of meshed shapes, beyond the well-studied regular, semi-regular and quasi-regular classes, and their duals (platonic, Catalan and Johnson). While our new mesh class is infinite, we prove that there exists a unique mesh parametrization, where each member of the class can be represented by two integer lattice variables, and moreover efficiently constructable. PMID:27563368

  4. Computerized Machine for Cutting Space Shuttle Thermal Tiles

    NASA Technical Reports Server (NTRS)

    Ramirez, Luis E.; Reuter, Lisa A.

    2009-01-01

    A report presents the concept of a machine aboard the space shuttle that would cut oversized thermal-tile blanks to precise sizes and shapes needed to replace tiles that were damaged or lost during ascent to orbit. The machine would include a computer-controlled jigsaw enclosed in a clear acrylic shell that would prevent escape of cutting debris. A vacuum motor would collect the debris into a reservoir and would hold a tile blank securely in place. A database stored in the computer would contain the unique shape and dimensions of every tile. Once a broken or missing tile was identified, its identification number would be entered into the computer, wherein the cutting pattern associated with that number would be retrieved from the database. A tile blank would be locked into a crib in the machine, the shell would be closed (proximity sensors would prevent activation of the machine while the shell was open), and a "cut" command would be sent from the computer. A blade would be moved around the crib like a plotter, cutting the tile to the required size and shape. Once the tile was cut, an astronaut would take a space walk for installation.

  5. Low-Density, Aerogel-Filled Thermal-Insulation Tiles

    NASA Technical Reports Server (NTRS)

    Santos, Maryann; Heng, Vann; Barney, Andrea; Oka, Kris; Droege, Michael

    2005-01-01

    Aerogel fillings have been investigated in a continuing effort to develop low-density thermal-insulation tiles that, relative to prior such tiles, have greater dimensional stability (especially less shrinkage), equal or lower thermal conductivity, and greater strength and durability. In preparation for laboratory tests of dimensional and thermal stability, prototypes of aerogel-filled versions of recently developed low-density tiles have been fabricated by impregnating such tiles to various depths with aerogel formations ranging in density from 1.5 to 5.6 lb/ft3 (about 53 to 200 kg/cu m). Results available at the time of reporting the information for this article showed that the thermal-insulation properties of the partially or fully aerogel- impregnated tiles were equivalent or superior to those of the corresponding non-impregnated tiles and that the partially impregnated tiles exhibited minimal (<1.5 percent) shrinkage after multiple exposures at a temperature of 2,300 F (1,260 C). Latest developments have shown that tiles containing aerogels at the higher end of the density range are stable after multiple exposures at the said temperature.

  6. Improving Efficiency of 3-SAT-Solving Tile Systems

    NASA Astrophysics Data System (ADS)

    Brun, Yuriy

    The tile assembly model has allowed the study of the nature's process of self-assembly and the development of self-assembling systems for solving complex computational problems. Research into this model has led to progress in two distinct classes of computational systems: Internet-sized distributed computation, such as software architectures for computational grids, and molecular computation, such as DNA computing. The design of large complex tile systems that emulate Turing machines has shown that the tile assembly model is Turing universal, while the design of small tile systems that implement simple algorithms has shown that tile assembly can be used to build private, fault-tolerant, and scalable distributed software systems and robust molecular machines. However, in order for these types of systems to compete with traditional computing devices, we must demonstrate that fairly simple tile systems can implement complex and intricate algorithms for important problems. The state of the art, however, requires vastly complex tile systems with large tile sets to implement such algorithms.

  7. Drainage water management effects on tile discharge and water quality

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Nitrogen (N) fluxes from tile drained watersheds have been implicated in water quality studies of the Mississippi River Basin, but the contribution of tile drains to N export in headwater watersheds is not well understood. The objective of this study was to ascertain seasonal and annual contribution...

  8. New SWAT tile drain equations: Modifications, Calibration, Validation, and Application

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Subsurface tile drainage is a commonly used agricultural practice to enhance crop yield in poorly drained but highly productive soils in many other regions of the world. However, the presence of subsurface tile drainage systems also expedites the transport of nitrate-nitrogen (NO3-N) and other chemi...

  9. Creative Tiling: A Story of 1000-and-1 Curves

    ERIC Educational Resources Information Center

    Al-Darwish, Nasir

    2012-01-01

    We describe a procedure that utilizes symmetric curves for building artistic tiles. One particular curve was found to mesh nicely with hundreds other curves, resulting in eye-catching tiling designs. The results of our work serve as a good example of using ideas from 2-D graphics and algorithms in a practical web-based application.

  10. Nutrient and Pesticide Removal From Laboratory Simulated Tile Drainage Discharge

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Excess nutrient and pesticide transport through subsurface tile drainage is well documented. One approach receiving consideration for reducing the amount of nutrients and pesticides in subsurface drainage waters is end-of-tile filters. The filters are often comprised of industrial wastes or by-produ...

  11. Improved Titanium Billet Inspection Sensitivity through Optimized Phased Array Design, Part II: Experimental Validation and Comparative Study with Multizone

    SciTech Connect

    Hassan, W.; Vensel, F.; Knowles, B.

    2006-03-06

    The inspection of critical rotating components of aircraft engines has made important advances over the last decade. The development of Phased Array (PA) inspection capability for billet and forging materials used in the manufacturing of critical engine rotating components has been a priority for Honeywell Aerospace. The demonstration of improved PA inspection system sensitivity over what is currently used at the inspection houses is a critical step in the development of this technology and its introduction to the supply base as a production inspection. As described in Part I (in these proceedings), a new phased array transducer was designed and manufactured for optimal inspection of eight inch diameter Ti-6Al-4V billets. After confirming that the transducer was manufactured in accordance with the design specifications a validation study was conducted to assess the sensitivity improvement of the PAI over the current capability of Multi-zone (MZ) inspection. The results of this study confirm the significant ({approx_equal} 6 dB in FBH number sign sensitivity) improvement of the PAI sensitivity over that of MZI.

  12. Introduction to building projection-based tiled display systems.

    SciTech Connect

    Hereld, M.; Judson, I. R.; Stevens, R.; Mathematics and Computer Science; Univ. of Chicago

    2000-07-01

    This tutorial introduces the concepts and technologies needed to build projector-based display systems. Tiled displays offer scalability, high resolution, and large formats for various applications. Tiled displays are an emerging technology for constructing semi-immersive visualization environments capable of presenting high-resolution images from scientific simulation. The largest impact may well arise from using large-format tiled displays as one of possibly multiple displays in building information or active spaces that surround the user with diverse ways of interacting with data and multimedia information flows. These environments may prove the ultimate successor to the desktop metaphor for information technology work. Several fundamental technological problems must be addressed to make tiled displays practical. These include: the choice of screen materials and support structures; choice of projectors, projector supports, and optional fine positioners; techniques for integrating image tiles into a seamless whole; interface devices for interaction with applications; display generators and interfaces; and the display software environment.

  13. Removal of nutrient and pesticides from tile drainage discharge using an end-of-tile cartridge approach

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Nutrient transport from subsurface tile drainage is pretty well documented. One approach receiving consideration for reducing the amount of nutrients and pesticides in subsurface drainage waters is end-of-tile filters. The filters are often comprised of industrial wastes or by-products that have a s...

  14. Energy-efficient specialization of functional units in a Coarse-Grained Reconfigurable Array

    SciTech Connect

    Van Essen, B; Panda, R; Wood, A; Ebeling, C; Hauck, S

    2010-12-01

    Functional units provide the backbone of any spatial accelerator by providing the computing resources. The desire for having rich and expensive functional units is in tension with producing a regular and energy-efficient computing fabric. This paper explores the design trade-off between complex, universal functional units and simpler, limited functional units. We show that a modest amount of specialization reduces the area-delay-energy product of an optimized architecture to 0.86x a baseline architecture. Furthermore, we provide a design guideline that allows an architect to customize the contents of the computing fabric just by examining the profile of benchmarks within the application domains. Functional units are the core of compute-intensive spatial accelerators. They perform the computation of interest with support from local storage and communication structures. Ideally, the functional units will provide rich functionality, supporting operations ranging from simple addition, to fused multiply-adds, to advanced transcendental functions and domain specific operations like add-compare-select. However, the total opportunity cost to support the more complex operations is a function of the cost of the hardware, the rate of occurrence of the operation in the application domain, and the inefficiency of emulating the operation with simpler operators. Examples of operations that are typically emulated in spatial accelerators are division and trigonometric functions, which can be solved using table-lookup based algorithms and the CORDIC algorithm. One reason to avoid having direct hardware support for complex operations in a tiled architecture like a Coarse-Grained Reconfigurable Array (CGRA) is that the expensive hardware will typically need to be replicated in some or all of the architecture's tiles. Tiled architecture are designed such that their tiles are either homogeneous or heterogeneous. Homogeneous architectures are simpler to design but heterogeneous

  15. ArraySolver: An Algorithm for Colour-Coded Graphical Display and Wilcoxon Signed-Rank Statistics for Comparing Microarray Gene Expression Data

    PubMed Central

    2004-01-01

    The massive surge in the production of microarray data poses a great challenge for proper analysis and interpretation. In recent years numerous computational tools have been developed to extract meaningful interpretation of microarray gene expression data. However, a convenient tool for two-groups comparison of microarray data is still lacking and users have to rely on commercial statistical packages that might be costly and require special skills, in addition to extra time and effort for transferring data from one platform to other. Various statistical methods, including the t-test, analysis of variance, Pearson test and Mann–Whitney U test, have been reported for comparing microarray data, whereas the utilization of the Wilcoxon signed-rank test, which is an appropriate test for two-groups comparison of gene expression data, has largely been neglected in microarray studies. The aim of this investigation was to build an integrated tool, ArraySolver, for colour-coded graphical display and comparison of gene expression data using the Wilcoxon signed-rank test. The results of software validation showed similar outputs with ArraySolver and SPSS for large datasets. Whereas the former program appeared to be more accurate for 25 or fewer pairs (n ≤ 25), suggesting its potential application in analysing molecular signatures that usually contain small numbers of genes. The main advantages of ArraySolver are easy data selection, convenient report format, accurate statistics and the familiar Excel platform. PMID:18629036

  16. Tile-in-ONE: A web platform which integrates Tile Calorimeter data quality and calibration assessment

    NASA Astrophysics Data System (ADS)

    Sivolella, A.; Ferreira, F.; Maidantchik, C.; Solans, C.; Solodkov, A.; Burghgrave, B.; Smirnov, Y.

    2015-12-01

    The ATLAS Tile Calorimeter collaboration assesses the quality of calibration data in order to ensure its proper operation. A number of tasks is then performed by executing several tools and accessing web systems, which were independently developed to meet distinct collaboration's requirements and do not necessarily are connected with each other. Thus, to attend the collaboration needs, several programs are usually implemented without a global perspective of the detector, requiring basic software features. In addition, functionalities may overlap in their objectives and frequently replicate resources retrieval mechanisms. Tile-in-ONE is a designed and implemented platform that assembles various web systems used by the calorimeter community through a single framework and a standard technology. It provides an infrastructure to support the code implementation, avoiding duplication of work while integrating with an overall view of the detector status. Database connectors smooth the process of information access since developers do not need to be aware of where records are placed and how to extract them. Within the environment, a dashboard stands for a particular Tile operation aspect and gets together plug-ins, i.e. software components that add specific features to an existing application. A server contains the platform core, which represents the basic environment to deal with the configuration, manage user settings and load plug-ins at runtime. A web middleware assists users to develop their own plug-ins, perform tests and integrate them into the platform as a whole. Backends are employed to allow that any type of application is interpreted and displayed in a uniform way. This paper describes Tile-in-ONE web platform.

  17. Floor tile and mastic removal project report

    SciTech Connect

    Not Available

    1992-11-01

    A test program was developed and coordinated with State and Federal Regulators and carried out at Fort Sill, Oklahoma. This program was carefully designed to create the worst conditions in order to evaluate whether asbestos fibers are released when asbestos containing floor tile and mastic are removed. There were over 1,000 samples taken and analyzed during the execution of the program. The conclusions reached were based upon analysis of the critical samples using the Transmission Electron Microscope (TEM) technology. Additionally, the TEM procedures were used to evaluate personnel samples to determine whether those fibers found were asbestos or other materials. Most of the (TEM) samples were analyzed by the US Environmental Protection Agency (EPA) Risk Reduction Engineering Laboratory in Cincinnati, Ohio.

  18. Tile-Compressed FITS Kernel for IRAF

    NASA Astrophysics Data System (ADS)

    Seaman, R.

    2011-07-01

    The Flexible Image Transport System (FITS) is a ubiquitously supported standard of the astronomical community. Similarly, the Image Reduction and Analysis Facility (IRAF), developed by the National Optical Astronomy Observatory, is a widely used astronomical data reduction package. IRAF supplies compatibility with FITS format data through numerous tools and interfaces. The most integrated of these is IRAF's FITS image kernel that provides access to FITS from any IRAF task that uses the basic IMIO interface. The original FITS kernel is a complex interface of purpose-built procedures that presents growing maintenance issues and lacks recent FITS innovations. A new FITS kernel is being developed at NOAO that is layered on the CFITSIO library from the NASA Goddard Space Flight Center. The simplified interface will minimize maintenance headaches as well as add important new features such as support for the FITS tile-compressed (fpack) format.

  19. Local growth of icosahedral quasicrystalline tilings

    NASA Astrophysics Data System (ADS)

    Hann, Connor T.; Socolar, Joshua E. S.; Steinhardt, Paul J.

    2016-07-01

    Icosahedral quasicrystals (IQCs) with extremely high degrees of translational order have been produced in the laboratory and found in naturally occurring minerals, yet questions remain about how IQCs form. In particular, the fundamental question of how locally determined additions to a growing cluster can lead to the intricate long-range correlations in IQCs remains open. In answer to this question, we have developed an algorithm that is capable of producing a perfectly ordered IQC yet relies exclusively on local rules for sequential, face-to-face addition of tiles to a cluster. When the algorithm is seeded with a special type of cluster containing a defect, we find that growth is forced to infinity with high probability and that the resultant IQC has a vanishing density of defects. The geometric features underlying this algorithm can inform analyses of experimental systems and numerical models that generate highly ordered quasicrystals.

  20. Array tomography: semiautomated image alignment.

    PubMed

    Micheva, Kristina D; O'Rourke, Nancy; Busse, Brad; Smith, Stephen J

    2010-11-01

    Array tomography is a volumetric microscopy method based on physical serial sectioning. Ultrathin sections of a plastic-embedded tissue are cut using an ultramicrotome, bonded in an ordered array to a glass coverslip, stained as desired, and imaged. The resulting two-dimensional image tiles can then be reconstructed computationally into three-dimensional volume images for visualization and quantitative analysis. The minimal thickness of individual sections permits high-quality rapid staining and imaging, whereas the array format allows reliable and convenient section handling, staining, and automated imaging. Also, the physical stability of the arrays permits images to be acquired and registered from repeated cycles of staining, imaging, and stain elution, as well as from imaging using multiple modalities (e.g., fluorescence and electron microscopy). Array tomography makes it possible to visualize and quantify previously inaccessible features of tissue structure and molecular architecture. However, careful preparation of the tissue is essential for successful array tomography; these steps can be time-consuming and require some practice to perfect. Successful array tomography requires that the captured images be properly stacked and aligned, and the software to achieve these ends is freely available. This protocol describes the construction of volumetric image stacks from images of fluorescently labeled arrays for three-dimensional image visualization, analysis, and archiving. PMID:21041400

  1. Next-Generation Microshutter Arrays for Large-Format Imaging and Spectroscopy

    NASA Technical Reports Server (NTRS)

    Moseley, Samuel; Kutyrev, Alexander; Brown, Ari; Li, Mary

    2012-01-01

    A next-generation microshutter array, LArge Microshutter Array (LAMA), was developed as a multi-object field selector. LAMA consists of small-scaled microshutter arrays that can be combined to form large-scale microshutter array mosaics. Microshutter actuation is accomplished via electrostatic attraction between the shutter and a counter electrode, and 2D addressing can be accomplished by applying an electrostatic potential between a row of shutters and a column, orthogonal to the row, of counter electrodes. Microelectromechanical system (MEMS) technology is used to fabricate the microshutter arrays. The main feature of the microshutter device is to use a set of standard surface micromachining processes for device fabrication. Electrostatic actuation is used to eliminate the need for macromechanical magnet actuating components. A simplified electrostatic actuation with no macro components (e.g. moving magnets) required for actuation and latching of the shutters will make the microshutter arrays robust and less prone to mechanical failure. Smaller-size individual arrays will help to increase the yield and thus reduce the cost and improve robustness of the fabrication process. Reducing the size of the individual shutter array to about one square inch and building the large-scale mosaics by tiling these smaller-size arrays would further help to reduce the cost of the device due to the higher yield of smaller devices. The LAMA development is based on prior experience acquired while developing microshutter arrays for the James Webb Space Telescope (JWST), but it will have different features. The LAMA modular design permits large-format mosaicking to cover a field of view at least 50 times larger than JWST MSA. The LAMA electrostatic, instead of magnetic, actuation enables operation cycles at least 100 times faster and a mass significantly smaller compared to JWST MSA. Also, standard surface micromachining technology will simplify the fabrication process, increasing

  2. Tiling and demand-driven evaluation for picture processing

    NASA Astrophysics Data System (ADS)

    Horain, Patrick J.; Dogaru, Victor

    1995-08-01

    We propose a software architecture for picture processing that allows efficient memory management when algorithms with many operators are applied to large images, and that allows automated parallelization. This architecture relies on image tiling and operators with a call back function that evaluates image tiles on demand. Several tiling strategies with and without overlapping are discussed. The compexity of this evaluation strategy is hidden to application programs. This is shown with a sample program. This architecture is well suited for neighborhood operators such as convolutions and mathematical morphology operators.

  3. 57. ORIGINAL TILE PRESS AND EXPERIMENTAL DENTAL KILN, SECOND FLOOR, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    57. ORIGINAL TILE PRESS AND EXPERIMENTAL DENTAL KILN, SECOND FLOOR, NORTH WING, HENRY MERCER USED THE KILN FOR HIS EARLIEST GLAZE TESTS. THE PRESS WAS DESIGNED TO BE USED WITH METAL CASED MOLDS. SINCE ONLY THE EARLIEST TILE DESIGNS ARE IN METAL CASES. THIS TECHNIQUE WAS PROBABLY DISCONTINUED. THIS PRESS WAS, THEREFORE, PROBABLY NOT USED EXTENSIVELY AT THIS SITE. THE UPPER PART OF GLAZE KILN No. 2 IS AT THE LEFT REAR. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

  4. ATLAS Tile Calorimeter: simulation and validation of the response

    NASA Astrophysics Data System (ADS)

    Faltova, Jana; ATLAS Collaboration

    2015-02-01

    The Tile Calorimeter (TileCal) is the central section of the ATLAS hadronic calorimeter at the Large Hadron Collider. Scintillation light produced in the tiles is readout by wavelength shifting fibers and transmitted to photomultiplier tubes (PMTs). The resulting electronic signals from approximately 10000 PMTs are measured and digitized before being further transferred to off-detector data-acquisition systems. Detailed simulations are described in this contribution, ranging from the implementation of the geometrical elements to the realistic description of the electronics readout pulses, including specific noise treatment and the signal reconstruction. Special attention is given to the improved optical signal propagation and the validation with the real particle data.

  5. Effect of acid vapor etching on morphological and opto-electric properties of flat silicon and silicon nanowire arrays: A comparative study

    NASA Astrophysics Data System (ADS)

    Amri, Chohdi; Ouertani, Rachid; Hamdi, Abderrahmen; Ezzaouia, Hatem

    2016-03-01

    In this paper, we report a comparative study between porous silicon (pSi) and porous silicon nanowires (pSiNWs). Acid Vapor Etching (AVE) treatment has been used to perform porous structure on flat Si and SiNWs array substrates respectively. SiNW structure is prepared by the widely used Silver catalyzed etching method. SEM and TEM images show that AVE treatment induces porous structure in the whole Si wafer and the SiNW sidewall. Comparatively to pSi, pSiNWs exhibit a low reflectivity in the whole spectral range which decreases with etching duration. However, the reflectivity of pSi changes with porous layer thickness. Both pSi and pSiNWs exhibit a significant PL peak situated at 2 eV. PL peaks are attributed to the quantum confinement effect in the silicon nanocrystallites (SiNCs). We discussed the significant enhancement in the peak intensities and a shift toward lower energy displayed in Raman spectra for both pSi and pSiNWs. We reported a correlative study of the AVE treatment effect on the minority carrier life time of flat silicon and SiNW arrays with the passivation effect of chemical induced silicon oxides highlighted by FTIR spectra.

  6. 25. CAFETERIA Note remains of tile floor in foreground. Food ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    25. CAFETERIA Note remains of tile floor in foreground. Food cooked on the stove was served to workers in the eating area to the left of the counter (off picture). - Hovden Cannery, 886 Cannery Row, Monterey, Monterey County, CA

  7. Using Homemade Algebra Tiles To Develop Algebra and Prealgebra Concepts.

    ERIC Educational Resources Information Center

    Leitze, Annette Ricks; Kitt, Nancy A.

    2000-01-01

    Describes how to use homemade tiles, sketches, and the box method to reach a broader group of students for successful algebra learning. Provides a list of concepts appropriate for such an approach. (KHR)

  8. 44. Everett Weinreb, photographer DETAIL, CEMENT TILE PATTERN, FROM LOGGIA ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    44. Everett Weinreb, photographer DETAIL, CEMENT TILE PATTERN, FROM LOGGIA LOOKING EAST ACROSS RECEPTION HALL - Los Angeles Union Passenger Terminal, Tracks & Shed, 800 North Alameda Street, Los Angeles, Los Angeles County, CA

  9. 45. Everett, Weinreb, photographer DETAIL, CEMENT TILE PATTERN FROM RECEPTION ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    45. Everett, Weinreb, photographer DETAIL, CEMENT TILE PATTERN FROM RECEPTION HALL LOOKING EAST ACROSS ARRIVAL LOBBY FLOOR - Los Angeles Union Passenger Terminal, Tracks & Shed, 800 North Alameda Street, Los Angeles, Los Angeles County, CA

  10. VIEW OF COMPASS ROSE TILE INLAY IN FLOOR OF LOBBY, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    VIEW OF COMPASS ROSE TILE INLAY IN FLOOR OF LOBBY, BUILDING 1, LOOKING SOUTHEAST - Roosevelt Base, Administration & Brig Building, Bounded by Nevada & Colorado Streets, Reeves & Richardson Avenues, Long Beach, Los Angeles County, CA

  11. 12. FIREPLACE: TILES AND CARVED WOOD PANEL. IN THE LATTER ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    12. FIREPLACE: TILES AND CARVED WOOD PANEL. IN THE LATTER READS THE WORDS OF THE MORRIS FAMILY'S HOMES: CEDAR GROVE, A.D. 1774 AND COMPTON, A.D. 1887. - Compton, Meadowbrook Avenue, Philadelphia, Philadelphia County, PA

  12. South front, west part, showing wrought iron gates and tiling ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    South front, west part, showing wrought iron gates and tiling at the former main entrance. - San Bernardino Valley College, Life Science Building, 701 South Mount Vernon Avenue, San Bernardino, San Bernardino County, CA

  13. Self-glazing ceramic tiles based on acidic igneous glasses

    SciTech Connect

    Merkin, A.P.; Nanazashvili, V.I.

    1988-07-01

    A technology was derived to produce self-glazing ceramic tiles based on single-component systems of acidic igneous (volcanic) glasses. A weakly alkaline solution of NaOH or KOH was used as the sealing water to activate the sintering process. Tests conducted on the self-glazing ceramic tiles showed that their water absorption amounts to 2.5-8%, linear shrinkage is 3.2-7%, and frost resistance amounts to 35-70 cycles. The application of acidic igneous glasses as the main raw material for the production of ceramic facing tiles made it possible to widen the raw material base and simplify the technology for fabricating ceramic facing tiles at lower cost. The use of waste products when processing perlite-bearing rocks, when carrying out mining and cutting of tuffs, slags, and tuff breccia for recovering cut materials was recommended.

  14. Detail of first floor of loading dock showing composition tile ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Detail of first floor of loading dock showing composition tile over wood floor/basement ceiling - Southern Pacific Railroad Depot, Railroad Terminal Post Office & Express Building, Fifth & I Streets, Sacramento, Sacramento County, CA

  15. Interference Heating to Cavities Between Simulated RSI Tiles

    NASA Technical Reports Server (NTRS)

    Johnson, C. B.

    1973-01-01

    Test results for full scale simulated surface insulation tiles on both the tunnel wall and in the free stream, for in-line and staggered tile orientations, are summarized as follows: (1) The staggered tile orientation has heating on the forward face which is a factor of 4.5 times higher than the heating to the forward face of the in-line tile orientation; (2) the longitudinal gap heating was the highest for the 0.3175 cm gap and the lowest for the 0.1587 cm gap; and (3) there was an order of magnitude decrease in the heating on the forward face of a spanwise gap when the gap size was decreased from 0.3175 cm to 0.1587 cm.

  16. Diatoms as an indicator for tile drainage flow in a German lowland catchment

    NASA Astrophysics Data System (ADS)

    Wu, Naicheng; Faber, Claas; Ulrich, Uta; Schmalz, Britta; Fohrer, Nicola

    2014-05-01

    The separation of flow components within a model simulation is of great importance for a successful implementation of management measures. Tracers are commonly used to identify and assess runoff-generating processes and to detect sources of stream flow components within a target catchment. Diatoms could be an ideal tracer due to their diverse preferences to different aquatic habitats (van Dam et al. 1994, Pfister et al. 2009). As a part of a DFG (Deutsche Forschungsgemeinschaft) project, we collected diatom samples of 9 sites (4 tile drainage, and 5 river sites) weekly or biweekly from March to July 2013 in a German lowland catchment (the Kielstau catchment). First results showed that diatom species Achnanthes lanceolata, Fragilaria biceps and Navicula ingapirca dominated in tile drainage flow with relative abundances of 22.2%, 21.5% and 10.9%, respectively. For river sites, the most abundant species was Navicula cryptocephala (20.5%), followed by Fragilaria biceps (12.9%), Cyclotella meneghiniana (9.5%) and Achnanthes lanceolata (9.3%). Compared with river sites, tile drainage flow had lower diatom density, biomass, species richness and percentage of Aquatic/Riparian diatoms (AqRi%). However, the proportion of Riparian diatoms (RiZo%) increased at tile drainage flow. Indicator value method (IndVal) revealed that the two water types were characterized by different indicator species. Fifteen taxa (e.g. Cocconeis placentula, Cyclotella meneghiniana, Navicula cryptocephala and Fragilaria biceps) were significant indicators for river sites. Achnanthes lanceolata, Achnanthes minutissima and Navicula ingapirca were significant indicators for tile drainage flow. These results highlight the suitability of diatoms as an indicator for tile drainage flow. Spatial and temporal variations of diatom community should be considered in future surveys. Keywords: Diatoms, Flow components, Indicator value method, Tracer References: Pfister, L., J. J. McDonnell, S. Wrede, D. Hl

  17. Torsional Buckling Tests of a Simulated Solar Array

    NASA Technical Reports Server (NTRS)

    Thornton, E. A.

    1996-01-01

    Spacecraft solar arrays are typically large structures supported by long, thin deployable booms. As such, they may be particularly susceptible to abnormal structural behavior induced by mechanical and thermal loading. One example is the Hubble Space Telescope solar arrays which consist of two split tubes fit one inside the other called BiSTEMs. The original solar arrays on the Hubble Space Telescope were found to be severely twisted following deployment and later telemetry data showed the arrays were vibrating during daylight to night and night to daylight transition. The solar array twist however can force the BiSTEM booms to change in cross-section and cause tile solar arrays to react unpredictably to future loading. The solar arrays were redesigned to correct for tile vibration, however, upon redeployment they again twisted. To assess the influence of boom cross-sectional configuration, experiments were conducted on two types of booms, (1)booms with closed cross-sections, and (2) booms with open cross-sections. Both models were subjected to compressive loading and imposed tip deflections. An existing analytical model by Chung and Thornton was used to define the individual load ranges for each model solar array configuration. The load range for the model solar array using closed cross-section booms was 0-120 Newtons and 0-160 Newtons for the model solar array using open cross-section booms. The results indicate the model solar array with closed cross-section booms buckled only in flexure. However, the results of the experiment with open cross-section booms indicate the model solar array buckled only in torsion and with imposed tip deflections the cross section can degrade by rotation of the inner relative to the outer STEM. For tile Hubble Space Telescope solar arrays the results of these experiments indicate the twisting resulted from the initial mechanical loading of the open cross-section booms.

  18. Genomic Alteration in Head and Neck Squamous Cell Carcinoma (HNSCC) Cell Lines Inferred from Karyotyping, Molecular Cytogenetics, and Array Comparative Genomic Hybridization.

    PubMed

    Singchat, Worapong; Hitakomate, Ekarat; Rerkarmnuaychoke, Budsaba; Suntronpong, Aorarat; Fu, Beiyuan; Bodhisuwan, Winai; Peyachoknagul, Surin; Yang, Fengtang; Koontongkaew, Sittichai; Srikulnath, Kornsorn

    2016-01-01

    Genomic alteration in head and neck squamous cell carcinoma (HNSCC) was studied in two cell line pairs (HN30-HN31 and HN4-HN12) using conventional C-banding, multiplex fluorescence in situ hybridization (M-FISH), and array comparative genomic hybridization (array CGH). HN30 and HN4 were derived from primary lesions in the pharynx and base of tongue, respectively, and HN31 and HN12 were derived from lymph-node metastatic lesions belonging to the same patients. Gain of chromosome 1, 7, and 11 were shared in almost all cell lines. Hierarchical clustering revealed that HN31 was closely related to HN4, which shared eight chromosome alteration cases. Large C-positive heterochromatins were found in the centromeric region of chromosome 9 in HN31 and HN4, which suggests complex structural amplification of the repetitive sequence. Array CGH revealed amplification of 7p22.3p11.2, 8q11.23q12.1, and 14q32.33 in all cell lines involved with tumorigenesis and inflammation genes. The amplification of 2p21 (SIX3), 11p15.5 (H19), and 11q21q22.3 (MAML2, PGR, TRPC6, and MMP family) regions, and deletion of 9p23 (PTPRD) and 16q23.1 (WWOX) regions were identified in HN31 and HN12. Interestingly, partial loss of PTPRD (9p23) and WWOX (16q23.1) genes was identified in HN31 and HN12, and the level of gene expression tended to be the down-regulation of PTPRD, with no detectable expression of the WWOX gene. This suggests that the scarcity of PTPRD and WWOX genes might have played an important role in progression of HNSCC, and could be considered as a target for cancer therapy or a biomarker in molecular pathology. PMID:27501229

  19. Genomic Alteration in Head and Neck Squamous Cell Carcinoma (HNSCC) Cell Lines Inferred from Karyotyping, Molecular Cytogenetics, and Array Comparative Genomic Hybridization

    PubMed Central

    Rerkarmnuaychoke, Budsaba; Suntronpong, Aorarat; Fu, Beiyuan; Bodhisuwan, Winai; Peyachoknagul, Surin; Yang, Fengtang; Koontongkaew, Sittichai; Srikulnath, Kornsorn

    2016-01-01

    Genomic alteration in head and neck squamous cell carcinoma (HNSCC) was studied in two cell line pairs (HN30-HN31 and HN4-HN12) using conventional C-banding, multiplex fluorescence in situ hybridization (M-FISH), and array comparative genomic hybridization (array CGH). HN30 and HN4 were derived from primary lesions in the pharynx and base of tongue, respectively, and HN31 and HN12 were derived from lymph-node metastatic lesions belonging to the same patients. Gain of chromosome 1, 7, and 11 were shared in almost all cell lines. Hierarchical clustering revealed that HN31 was closely related to HN4, which shared eight chromosome alteration cases. Large C-positive heterochromatins were found in the centromeric region of chromosome 9 in HN31 and HN4, which suggests complex structural amplification of the repetitive sequence. Array CGH revealed amplification of 7p22.3p11.2, 8q11.23q12.1, and 14q32.33 in all cell lines involved with tumorigenesis and inflammation genes. The amplification of 2p21 (SIX3), 11p15.5 (H19), and 11q21q22.3 (MAML2, PGR, TRPC6, and MMP family) regions, and deletion of 9p23 (PTPRD) and 16q23.1 (WWOX) regions were identified in HN31 and HN12. Interestingly, partial loss of PTPRD (9p23) and WWOX (16q23.1) genes was identified in HN31 and HN12, and the level of gene expression tended to be the down-regulation of PTPRD, with no detectable expression of the WWOX gene. This suggests that the scarcity of PTPRD and WWOX genes might have played an important role in progression of HNSCC, and could be considered as a target for cancer therapy or a biomarker in molecular pathology. PMID:27501229

  20. ATLAS Tile Calorimeter performance with Run 1 data

    NASA Astrophysics Data System (ADS)

    Cerdá Alberich, L.

    2016-07-01

    The performance of the central hadronic calorimeter, TileCal, in the ATLAS Experiment at the Large Hadron Collider is studied using cosmic-ray muons and the large sample of proton-proton collisions acquired during the Run 1 of LHC (2010-2012). Results are presented for the precision of the absolute energy scale and timing, noise characterization, and time-stability of the detector. The results show that the Tile Calorimeter performance is within the design requirements of the detector.

  1. 56. ORIGINAL MOLDS. THE MORAVIAN POTTERY AND TILE WORKS HAS ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    56. ORIGINAL MOLDS. THE MORAVIAN POTTERY AND TILE WORKS HAS APPROXIMATELY 6,000 PLASTER MOLDS OF VARIOUS TYPES, INCLUDING THE DEEP CAVITY MOLDS IN THE CENTER OF THE PHOTOGRAPH. THESE MOLDS PRODUCED ALLEGORICAL FIGURES TO BE INSTALLED AROUND THE CORNICES OF PUBLIC SCHOOLS. - Moravian Pottery & Tile Works, Southwest side of State Route 313 (Swamp Road), Northwest of East Court Street, Doylestown, Bucks County, PA

  2. No inherent glassiness in a Penrose tiling quasicrystal

    SciTech Connect

    Strandburg, K.J.; Dressel, P.R.

    1988-11-01

    Consideration of the structure of the Penrose pattern has led to speculation that a system with a Penrose tiling ground state might be subject to inherent glassy behavior. Monte Carol simulations show, using a simple model of the energetics, that there is no inherent glassiness in the Penrose tiling. Thermodynamic quantities measured are completely reversible, displaying no observable hysterisis, and the system may be easily cooled from a highly disordered configuration into its lowest energy state. 11 refs., 7 figs.

  3. Ceramic tile grout removal & sealing using high power lasers

    SciTech Connect

    Lawrence, J.; Li, L.; Spencer, J.T.

    1996-12-31

    Work has been conducted using a Nd:YAG laser, a CO{sub 2} laser and a high power diode laser (HPDL) in order to determine the feasibility of removing contaminated tile grout from the void between adjoining vitrified ceramic tiles, and to seal the void permanently with a material having an impermeable surface glaze. Reported on in the paper are; the basic process phenomena, the process effectiveness, suitable vitrifiable material development, a heat affect study and a morphological and compositional analysis.

  4. Spatial chaos of Wang tiles with two symbols

    NASA Astrophysics Data System (ADS)

    Chen, Jin-Yu; Chen, Yu-Jie; Hu, Wen-Guei; Lin, Song-Sun

    2016-02-01

    This investigation completely classifies the spatial chaos problem in plane edge coloring (Wang tiles) with two symbols. For a set of Wang tiles B , spatial chaos occurs when the spatial entropy h ( B ) is positive. B is called a minimal cycle generator if P ( B ) ≠ 0̸ and P ( B ' ) = 0̸ whenever B ' ⫋ B , where P ( B ) is the set of all periodic patterns on ℤ2 generated by B . Given a set of Wang tiles B , write B = C 1 ∪ C 2 ∪ ⋯ ∪ C k ∪ N , where Cj, 1 ≤ j ≤ k, are minimal cycle generators and B contains no minimal cycle generator except those contained in C1∪C2∪⋯∪Ck. Then, the positivity of spatial entropy h ( B ) is completely determined by C1∪C2∪⋯∪Ck. Furthermore, there are 39 equivalence classes of marginal positive-entropy sets of Wang tiles and 18 equivalence classes of saturated zero-entropy sets of Wang tiles. For a set of Wang tiles B , h ( B ) is positive if and only if B contains a MPE set, and h ( B ) is zero if and only if B is a subset of a SZE set.

  5. Uncertainty in nutrient loads from tile-drained landscapes: Effect of sampling frequency, calculation algorithm, and compositing strategy

    NASA Astrophysics Data System (ADS)

    Williams, Mark R.; King, Kevin W.; Macrae, Merrin L.; Ford, William; Van Esbroeck, Chris; Brunke, Richard I.; English, Michael C.; Schiff, Sherry L.

    2015-11-01

    Accurate estimates of annual nutrient loads are required to evaluate trends in water quality following changes in land use or management and to calibrate and validate water quality models. While much emphasis has been placed on understanding the uncertainty of nutrient load estimates in large, naturally drained watersheds, few studies have focused on tile-drained fields and small tile-drained headwater watersheds. The objective of this study was to quantify uncertainty in annual dissolved reactive phosphorus (DRP) and nitrate-nitrogen (NO3-N) load estimates from four tile-drained fields and two small tile-drained headwater watersheds in Ohio, USA and Ontario, Canada. High temporal resolution datasets of discharge (10-30 min) and nutrient concentration (2 h to 1 d) were collected over a 1-2 year period at each site and used to calculate a reference nutrient load. Monte Carlo simulations were used to subsample the measured data to assess the effects of sample frequency, calculation algorithm, and compositing strategy on the uncertainty of load estimates. Results showed that uncertainty in annual DRP and NO3-N load estimates was influenced by both the sampling interval and the load estimation algorithm. Uncertainty in annual nutrient load estimates increased with increasing sampling interval for all of the load estimation algorithms tested. Continuous discharge measurements and linear interpolation of nutrient concentrations yielded the least amount of uncertainty, but still tended to underestimate the reference load. Compositing strategies generally improved the precision of load estimates compared to discrete grab samples; however, they often reduced the accuracy. Based on the results of this study, we recommended that nutrient concentration be measured every 13-26 h for DRP and every 2.7-17.5 d for NO3-N in tile-drained fields and small tile-drained headwater watersheds to accurately (±10%) estimate annual loads.

  6. Performance of a 64-channel, 3.2×3.2 cm2 SiPM tile for TOF-PET application

    NASA Astrophysics Data System (ADS)

    Ferri, Alessandro; Acerbi, Fabio; Gola, Alberto; Piemonte, Claudio; Paternoster, Giovanni; Zorzi, Nicola

    2016-07-01

    In this work, we present a new 3.2×3.2 cm2 detector tile, composed of 8×8 single SiPMs, having a regular 4 mm pitch in both the X and Y directions. The tile fill factor is 85%. We produced two versions of the tile with different SiPM technologies: RGB-HD and NUV. The first one features square micro-cells with 25 μm pitch, a PDE peaked at 550 nm and a DCR of 300 kHz/mm2, at 20 °C and at maximum detection efficiency. The second one features micro-cells with 40 μm pitch and a PDE peaked in the blue part of the spectrum. The dark count rate at 20 °C and at maximum PDE is 100 kHz/mm2. In this work, we show the energy and timing resolution measurements at 511 keV obtained coupling the two tiles to an 8×8 LYSO array with a pixel size of 4×4×22 mm3, perfectly matching the photo-detector array.

  7. Are Tiled Display Walls Needed for Astronomy?

    NASA Astrophysics Data System (ADS)

    Meade, Bernard F.; Fluke, Christopher J.; Manos, Steven; Sinnott, Richard O.

    2014-08-01

    Clustering commodity displays into a Tiled Display Wall (TDW) provides a cost-effective way to create an extremely high resolution display, capable of approaching the image sizes now generated by modern astronomical instruments. Many research institutions have constructed TDWs on the basis that they will improve the scientific outcomes of astronomical imagery. We test this concept by presenting sample images to astronomers and non-astronomers using a standard desktop display (SDD) and a TDW. These samples include standard English words, wide field galaxy surveys and nebulae mosaics from the Hubble telescope. Our experiments show that TDWs provide a better environment than SDDs for searching for small targets in large images. They also show that astronomers tend to be better at searching images for targets than non-astronomers, both groups are generally better when employing physical navigation as opposed to virtual navigation, and that the combination of two non-astronomers using a TDW rivals the experience of a single astronomer. However, there is also a large distribution in aptitude amongst the participants and the nature of the content also plays a significant role in success.

  8. Tiling solutions for optimal biological sensing

    NASA Astrophysics Data System (ADS)

    Walczak, Aleksandra M.

    2015-10-01

    Biological systems, from cells to organisms, must respond to the ever-changing environment in order to survive and function. This is not a simple task given the often random nature of the signals they receive, as well as the intrinsically stochastic, many-body and often self-organized nature of the processes that control their sensing and response and limited resources. Despite a wide range of scales and functions that can be observed in the living world, some common principles that govern the behavior of biological systems emerge. Here I review two examples of very different biological problems: information transmission in gene regulatory networks and diversity of adaptive immune receptor repertoires that protect us from pathogens. I discuss the trade-offs that physical laws impose on these systems and show that the optimal designs of both immune repertoires and gene regulatory networks display similar discrete tiling structures. These solutions rely on locally non-overlapping placements of the responding elements (genes and receptors) that, overall, cover space nearly uniformly. xml:lang="fr"

  9. Phase change material in floor tiles for thermal energy storage

    NASA Astrophysics Data System (ADS)

    Lee, Amy Sarah

    Traditional passive solar systems have relied on sensible heat storage for energy savings. Recent research has investigated taking advantage of latent heat storage for additional energy savings. This is accomplished by the incorporation of phase change material into building materials used in traditional passive applications. Trombe walls, ceilings and floors can all be enhanced with phase change materials. This research introduces a new flooring material that incorporates a phase change material ready for commercial manufacture. An agglomerate floor tile containing 20% by mass of encapsulated octadecane has been manufactured. Flexural and compressive strength of 7.4 MPa and 24.5 MPa respectively, were measured for the tile. Peak melting transition temperature was determined to be 27.2°C with a latent heat of 33.9 J/g of tile. Structural and thermal performance of the tile surpassed that of a typical ceramic tile. Each tile was composed of quartz, resin and phase change material. Statistical modeling was performed to analyze the response of flexural and compressive strength on varying amounts of quartz, resin and phase change material. Resulting polynomials described the effect of adding phase change material into the tile. With as little as 10% by mass of phase change material, the strength was reduced to less than 50% of tile without phase change material. It was determined that the maximum phase change material content to attain structural integrity greater than ceramic tile was 20% by mass. The statistical analysis used for this research was based on mixture experiments. A procedure was developed to simplify the selection of data points used in the fit of the polynomials to describe the response of flexural and compressive strengths. Analysis of energy savings using this floor tile containing 20% by mass of phase change material was performed as an addendum to this research. A known static simulation method, SLR (solar load ratio), was adapted to include

  10. Prevalence of Cardiovascular Risk Factors among Tile and Ceramic Workers in Yazd, Iran.

    PubMed

    Mehrparvar, Amir Houshang; Mirmohammadi, Seyyed Jalil; Mostaghaci, Mehrdad; Bahaloo, Maryam; Heydari, Mohammad; Samimi, Ehsan; Zohal, Mahnaz; Davari, Mohammad Hossein

    2013-01-01

    Introduction. Cardiovascular disorders (CVDs) are among the most important diseases in the world and determination of their risk factors is essential for primary and secondary prevention. This study aimed to evaluate these risk factors in workers of tile and ceramic industry, a main industry in Yazd. Materials and Methods. In a cross-sectional study, 1075 tile and ceramic workers were selected by simple sampling method. BMI, blood pressure, FBS, and lipid profile were measured and compared to international standards. Results. 731 individuals (68%) had at least one risk factor, and 52%, 12%, 3%, and 0.7% had one, two, three, and four risk factors, respectively. The most common risk factor was abnormal BMI (49.6%); low HDL (48.4%) and high TG (14.1%) were in the second and third orders. Conclusion. This study showed a relatively high prevalence for CVD risk factors among tile and ceramic workers. Low HDL, high TG, and overweight were the most frequent risk factors in this population. PMID:24967143

  11. Parametric Weight Comparison of Advanced Metallic, Ceramic Tile, and Ceramic Blanket Thermal Protection Systems

    NASA Technical Reports Server (NTRS)

    Myers, David E.; Martin, Carl J.; Blosser, Max L.

    2000-01-01

    A parametric weight assessment of advanced metallic panel, ceramic blanket, and ceramic tile thermal protection systems (TPS) was conducted using an implicit, one-dimensional (I-D) finite element sizing code. This sizing code contained models to account for coatings fasteners, adhesives, and strain isolation pads. Atmospheric entry heating profiles for two vehicles, the Access to Space (ATS) vehicle and a proposed Reusable Launch Vehicle (RLV), were used to ensure that the trends were not unique to a certain trajectory. Ten TPS concepts were compared for a range of applied heat loads and substructural heat capacities to identify general trends. This study found the blanket TPS concepts have the lightest weights over the majority of their applicable ranges, and current technology ceramic tiles and metallic TPS concepts have similar weights. A proposed, state-of-the-art metallic system which uses a higher temperature alloy and efficient multilayer insulation was predicted to be significantly lighter than the ceramic tile stems and approaches blanket TPS weights for higher integrated heat loads.

  12. Dominant controls on pesticide transport from tile to catchment scale: Lessons from a minimalist model

    NASA Astrophysics Data System (ADS)

    Zanardo, S.; Basu, N. B.; Botter, G.; Rinaldo, A.; Rao, P. S. C.

    2012-04-01

    This paper proposes a minimalist modeling approach for characterizing pesticide concentrations in runoff from agricultural catchments across spatial scales. The model proposed is of an intermediate level of complexity between traditional chromatographic separation models and the more complex dual-domain models. Parsimony in the model is achieved by assuming stationarity of catchment travel time distributions and by coupling a dual-domain source zone model that describes near-surface pesticide dynamics with the mass response function (MRF) approach, which describes catchment-scale solute transport. The model is evaluated by comparing predicted atrazine concentrations with measured values over a 5 yr period at two spatial scales (tile drain: 3-5 ha; river station: 69 km2) within an intensively managed agricultural catchment in Illinois, United States. Pesticide dynamics within the source zone provided the strongest control on leaching. Two parameters were calibrated at the tile scale, Γ, which describes partitioning in the dual-domain surficial source zone, and ke, which describes the mass transfer rate constant between the two domains. The initial peak of concentration was found to be sensitive to Γ, while the later peaks were sensitive to ke. The calibrated parameters at the tile stations were used to predict atrazine dynamics at the river station. Prediction errors are examined and related to the lack of detailed information about anthropogenic forcings across scales (e.g., land-use or soil/crop management practices).

  13. Prevalence of Cardiovascular Risk Factors among Tile and Ceramic Workers in Yazd, Iran

    PubMed Central

    Mehrparvar, Amir Houshang; Mirmohammadi, Seyyed Jalil; Heydari, Mohammad; Samimi, Ehsan; Zohal, Mahnaz

    2013-01-01

    Introduction. Cardiovascular disorders (CVDs) are among the most important diseases in the world and determination of their risk factors is essential for primary and secondary prevention. This study aimed to evaluate these risk factors in workers of tile and ceramic industry, a main industry in Yazd. Materials and Methods. In a cross-sectional study, 1075 tile and ceramic workers were selected by simple sampling method. BMI, blood pressure, FBS, and lipid profile were measured and compared to international standards. Results. 731 individuals (68%) had at least one risk factor, and 52%, 12%, 3%, and 0.7% had one, two, three, and four risk factors, respectively. The most common risk factor was abnormal BMI (49.6%); low HDL (48.4%) and high TG (14.1%) were in the second and third orders. Conclusion. This study showed a relatively high prevalence for CVD risk factors among tile and ceramic workers. Low HDL, high TG, and overweight were the most frequent risk factors in this population. PMID:24967143

  14. Application of Hilbert-Huang Transform for Improved Defect Detection in Terahertz NDE of Shuttle Tiles

    NASA Technical Reports Server (NTRS)

    Anastasi, Robert F.; Madaras, Eric I.

    2005-01-01

    Terahertz NDE is being examined as a method to inspect the adhesive bond-line of Space Shuttle tiles for defects. Terahertz signals are generated and detected, using optical excitation of biased semiconductors with femtosecond laser pulses. Shuttle tile samples were manufactured with defects that included repair regions unbond regions, and other conditions that occur in Shuttle structures. These samples were inspected with a commercial terahertz NDE system that scanned a tile and generated a data set of RF signals. The signals were post processed to generate C-scan type images that are typically seen in ultrasonic NDE. To improve defect visualization the Hilbert-Huang Transform, a transform that decomposes a signal into oscillating components called intrinsic mode functions, was applied to test signals identified as being in and out of the defect regions and then on a complete data set. As expected with this transform, the results showed that the decomposed low-order modes correspond to signal noise while the high-order modes correspond to low frequency oscillations in the signal and mid-order modes correspond to local signal oscillations. The local oscillations compare well with various reflection interfaces and the defect locations in the original signal.

  15. Characterizing phosphorus dynamics in tile-drained agricultural fieldsof eastern Wisconsin

    USGS Publications Warehouse

    Madison, Allison; Ruark, Matthew; Stuntebeck, Todd D.; Komiskey, Matthew J.; Good, Laura W; Drummy, Nancy; Cooley, Eric

    2014-01-01

    Artificial subsurface drainage provides an avenue for the rapid transfer of phosphorus (P) from agricultural fields to surface waters. This is of particular interest in eastern Wisconsin, where there is a concentrated population of dairy farms and high clay content soils prone to macropore development. Through collaboration with private landowners, surface and tile drainage was measured and analyzed for dissolved reactive P (DRP) and total P (TP) losses at four field sites in eastern Wisconsin between 2005 and 2009. These sites, which received frequent manure applications, represent a range of crop management practices which include: two chisel plowed corn fields (CP1, CP2), a no-till corn–soybean field (NT), and a grazed pasture (GP). Subsurface drainage was the dominant pathway of water loss at each site accounting for 66–96% of total water discharge. Average annual flow-weighted (FW) TP concentrations were 0.88, 0.57, 0.21, and 1.32 mg L−1 for sites CP1, CP2, NT, and GP, respectively. Low TP concentrations at the NT site were due to tile drain interception of groundwater flow where large volumes of tile drainage water diluted the FW-TP concentrations. Subsurface pathways contributed between 17% and 41% of the TP loss across sites. On a drainage event basis, total drainage explained between 36% and 72% of the event DRP loads across CP1, CP2, and GP; there was no relationship between event drainflow and event DRP load at the NT site. Manure applications did not consistently increase P concentrations in drainflow, but annual FW-P concentrations were greater in years receiving manure applications compared to years without manure application. Based on these field measures, P losses from tile drainage must be integrated into field level P budgets and P loss calculations on heavily manured soils, while also acknowledging the unique drainage patterns observed in eastern Wisconsin.

  16. Characterizing phosphorus dynamics in tile-drained agricultural fields of eastern Wisconsin

    NASA Astrophysics Data System (ADS)

    Madison, Allison M.; Ruark, Matthew D.; Stuntebeck, Todd D.; Komiskey, Matthew J.; Good, Lara W.; Drummy, Nancy; Cooley, Eric T.

    2014-11-01

    Artificial subsurface drainage provides an avenue for the rapid transfer of phosphorus (P) from agricultural fields to surface waters. This is of particular interest in eastern Wisconsin, where there is a concentrated population of dairy farms and high clay content soils prone to macropore development. Through collaboration with private landowners, surface and tile drainage was measured and analyzed for dissolved reactive P (DRP) and total P (TP) losses at four field sites in eastern Wisconsin between 2005 and 2009. These sites, which received frequent manure applications, represent a range of crop management practices which include: two chisel plowed corn fields (CP1, CP2), a no-till corn-soybean field (NT), and a grazed pasture (GP). Subsurface drainage was the dominant pathway of water loss at each site accounting for 66-96% of total water discharge. Average annual flow-weighted (FW) TP concentrations were 0.88, 0.57, 0.21, and 1.32 mg L-1 for sites CP1, CP2, NT, and GP, respectively. Low TP concentrations at the NT site were due to tile drain interception of groundwater flow where large volumes of tile drainage water diluted the FW-TP concentrations. Subsurface pathways contributed between 17% and 41% of the TP loss across sites. On a drainage event basis, total drainage explained between 36% and 72% of the event DRP loads across CP1, CP2, and GP; there was no relationship between event drainflow and event DRP load at the NT site. Manure applications did not consistently increase P concentrations in drainflow, but annual FW-P concentrations were greater in years receiving manure applications compared to years without manure application. Based on these field measures, P losses from tile drainage must be integrated into field level P budgets and P loss calculations on heavily manured soils, while also acknowledging the unique drainage patterns observed in eastern Wisconsin.

  17. Performance of the ATLAS Tile Hadronic Calorimeter at LHC in Run 1 and planned upgrades

    NASA Astrophysics Data System (ADS)

    Solovyanov, O.

    2014-10-01

    The Tile Calorimeter (TileCal) is the central section of the ATLAS hadronic calorimeter at the Large Hadron Collider, a key detector for the measurements of hadrons, jets, tau leptons and missing transverse energy. Scintillation light produced in the tiles is transmitted by wavelength shifting fibres to photomultiplier tubes (PMTs). The resulting electronic signals from approximately 10000 PMTs are digitized before being transferred to off-detector data-acquisition systems. The data quality procedures used during the LHC data-taking and the evolution of the detector status are explained in the presentation. The energy and the time reconstruction performance of the digitized signals is presented and the noise behaviour and its improvement during the detector consolidation in maintenance periods are shown. A set of calibration systems allow monitoring and equalization of the calorimeter channels responses via signal sources that act at every stage of the signal path, from scintillation light to digitized signal. These partially overlapping systems are described in detail, their individual performance is discussed as well as the comparative results from measurements of the evolution of the calorimeter response with time during the full LHC data-taking period. The TileCal upgrade aims at replacing the majority of the on- and off-detector electronics so that all calorimeter signals will be directly digitized and sent to the off-detector electronics in the counting room. To achieve the required reliability, redundancy has been introduced at different levels. For the off-detector electronics a special pre-processor board is being developed, which will take care of the initial trigger processing, while the main data are temporarily stored in the pipeline and de-randomiser memories.

  18. Somatic alterations in the melanoma genome: a high-resolution array-based comparative genomic hybridization study.

    PubMed

    Gast, Andreas; Scherer, Dominique; Chen, Bowang; Bloethner, Sandra; Melchert, Stephanie; Sucker, Antje; Hemminki, Kari; Schadendorf, Dirk; Kumar, Rajiv

    2010-08-01

    We performed DNA microarray-based comparative genomic hybridization to identify somatic alterations specific to melanoma genome in 60 human cell lines from metastasized melanoma and from 44 corresponding peripheral blood mononuclear cells. Our data showed gross but nonrandom somatic changes specific to the tumor genome. Although the CDKN2A (78%) and PTEN (70%) loci were the major targets of mono-allelic and bi-allelic deletions, amplifications affected loci with BRAF (53%) and NRAS (12%) as well as EGFR (52%), MITF (40%), NOTCH2 (35%), CCND1 (18%), MDM2 (18%), CCNE1 (10%), and CDK4 (8%). The amplified loci carried additional genes, many of which could potentially play a role in melanoma. Distinct patterns of copy number changes showed that alterations in CDKN2A tended to be more clustered in cell lines with mutations in the BRAF and NRAS genes; the PTEN locus was targeted mainly in conjunction with BRAF mutations. Amplification of CCND1, CDK4, and other loci was significantly increased in cell lines without BRAF-NRAS mutations and so was the loss of chromosome arms 13q and 16q. Our data suggest involvement of distinct genetic pathways that are driven either through oncogenic BRAF and NRAS mutations complemented by aberrations in the CDKN2A and PTEN genes or involve amplification of oncogenic genomic loci and loss of 13q and 16q. It also emerges that each tumor besides being affected by major and most common somatic genetic alterations also acquires additional genetic alterations that could be crucial in determining response to small molecular inhibitors that are being currently pursued. PMID:20544847

  19. Optimizing roof-integrated photovoltaics: A case study of the PowerGuard{trademark} roofing tile

    SciTech Connect

    Dinwoodie, T.L.; Shugar, D.S.

    1994-12-31

    This paper describes the development and implementation of a building-integrated photovoltaic (PV) roofing tile system that provides grid-connected electric power to buildings. The PV roofing tile system, together with waterproof membrane, insulation, and electrical interconnection, is called PowerGuard{trademark}. PowerGuard is one of the first PV roofing systems for flat and moderately-sloped commercial buildings that replaces conventional roof materials without requiring membrane penetrations and mechanical fastening to building structures. When evaluated as a PV system, the building integration reduces the cost of a PowerGuard system by 14% to 26% rather than incurring a structural mounting cost of 18% to 22 % to conventionally fasten the system. Data are reported from a 3.0 kW PowerGuard prototype operating in Folsom, California. PowerLight Corporation supplied the system using large-area amorphous silicon modules manufactured by Advanced Photovoltaic Systems, Inc. Performance data indicates the system is exceeding contractual requirements. Sensitivity analysis, based upon performance, installed costs, and supplier data, indicates (1) a marginal economic advantage to tilting the PV array; (2) a marginal economic impact of increased PV efficiency; and (3) economies-of-scale which make PowerGuard systems economical today for commercial customers in sunny areas who pay high electricity rates.

  20. Towards Optimal Filtering on ARM for ATLAS Tile Calorimeter Front-End Processing

    NASA Astrophysics Data System (ADS)

    Cox, Mitchell A.

    2015-10-01

    The Large Hadron Collider at CERN generates enormous amounts of raw data which presents a serious computing challenge. After planned upgrades in 2022, the data output from the ATLAS Tile Calorimeter will increase by 200 times to over 40 Tb/s. Advanced and characteristically expensive Digital Signal Processors (DSPs) and Field Programmable Gate Arrays (FPGAs) are currently used to process this quantity of data. It is proposed that a cost- effective, high data throughput Processing Unit (PU) can be developed by using several ARM System on Chips in a cluster configuration to allow aggregated processing performance and data throughput while maintaining minimal software design difficulty for the end-user. ARM is a cost effective and energy efficient alternative CPU architecture to the long established x86 architecture. This PU could be used for a variety of high-level algorithms on the high data throughput raw data. An Optimal Filtering algorithm has been implemented in C++ and several ARM platforms have been tested. Optimal Filtering is currently used in the ATLAS Tile Calorimeter front-end for basic energy reconstruction and is currently implemented on DSPs.

  1. Construction of 2D quasi-periodic Rauzy tiling by similarity transformation

    SciTech Connect

    Zhuravlev, V. G.; Maleev, A. V.

    2009-05-15

    A new approach to constructing self-similar fractal tilings is proposed based on the construction of semigroups generated by a finite set of similarity transformations. The Rauzy tiling-a 2D analog of 1D Fibonacci tiling generated by the golden mean-is used as an example to illustrate this approach. It is shown that the Rauzy torus development and the elementary fractal boundary of Rauzy tiling can be constructed in the form of a set of centers of similarity semigroups generated by two and three similarity transformations, respectively. A centrosymmetric tiling, locally dual to the Rauzy tiling, is constructed for the first time and its parameterization is developed.

  2. Reappraisal of flow to tile drains III. Drains with limited flow capacity

    NASA Astrophysics Data System (ADS)

    Khan, S.; Rushton, K. R.

    1996-09-01

    This third paper of the series on the reappraisal of flow to tile drains considers the time-variant situations in tile drain drainage systems when the quantity of water carried by tile drains is limited due to the capacity of the drains or the pumping equipment. Two categories of problem are analysed in this paper: (i) a series of parallel tile drains with a maximum specified flow and (ii) interceptor drains in the vicinity of canals. Complete details for satisfying the maximum specified flow conditions in tile drains are given. The effect of different capacities of tile drains on the performance of drainage system is explored.

  3. Investigation of registration algorithms for the automatic tile processing system

    NASA Technical Reports Server (NTRS)

    Tamir, Dan E.

    1995-01-01

    The Robotic Tile Inspection System (RTPS), under development in NASA-KSC, is expected to automate the processes of post-flight re-water-proofing and the process of inspection of the Shuttle heat absorbing tiles. An important task of the robot vision sub-system is to register the 'real-world' coordinates with the coordinates of the robot model of the Shuttle tiles. The model coordinates relate to a tile data-base and pre-flight tile-images. In the registration process, current (post-flight) images are aligned with pre-flight images to detect the rotation and translation displacement required for the coordinate systems rectification. The research activities performed this summer included study and evaluation of the registration algorithm that is currently implemented by the RTPS, as well as, investigation of the utility of other registration algorithms. It has been found that the current algorithm is not robust enough. This algorithm has a success rate of less than 80% and is, therefore, not suitable for complying with the requirements of the RTPS. Modifications to the current algorithm has been developed and tested. These modifications can improve the performance of the registration algorithm in a significant way. However, this improvement is not sufficient to satisfy system requirements. A new algorithm for registration has been developed and tested. This algorithm presented very high degree of robustness with success rate of 96%.

  4. Leaching of dissolved phosphorus from tile-drained agricultural areas.

    PubMed

    Andersen, H E; Windolf, J; Kronvang, B

    2016-01-01

    We investigated leaching of dissolved phosphorus (P) from 45 tile-drains representing animal husbandry farms in all regions of Denmark. Leaching of P via tile-drains exhibits a high degree of spatial heterogeneity with a low concentration in the majority of tile-drains and few tile-drains (15% in our investigation) having high to very high concentration of dissolved P. The share of dissolved organic P (DOP) was high (up to 96%). Leaching of DOP has hitherto been a somewhat overlooked P loss pathway in Danish soils and the mechanisms of mobilization and transport of DOP needs more investigation. We found a high correlation between Olsen-P and water extractable P. Water extractable P is regarded as an indicator of risk of loss of dissolved P. Our findings indicate that Olsen-P, which is measured routinely in Danish agricultural soils, may be a useful proxy for the P leaching potential of soils. However, we found no straight-forward correlation between leaching potential of the top soil layer (expressed as either degree of P saturation, Olsen-P or water extractable P) and the measured concentration of dissolved P in the tile-drain. This underlines that not only the source of P but also the P loss pathway must be taken into account when evaluating the risk of P loss. PMID:27332841

  5. Microwave versus conventional sintering of silicon carbide tiles

    SciTech Connect

    Kass, M.D.; Caughman, J.B.O.; Forrester, S.C.; Akerman, A.

    1997-05-07

    Silicon carbide is being evaluated as an armor material because of its lightweight, high-hardness, and excellent armor efficiency. However, one of the problems associated with silicon carbide is the high cost associated with achieving fully dense tiles. Full density requires either hot pressing and sintering or reaction bonding. Past efforts have shown that hot pressed tiles have a higher armor efficiency than those produced by reaction bonded sintering. An earlier stuy showed that the acoustic properties of fully-dense silicon carbide tiles were enhanced through the use of post-sintered microwave heat treatments. One of the least expensive forming techniques is to isostatically press-and-sinter. In this study, the authors have used microwave energy to densify silicon carbide green bodies. Microwave sintering has been demonstrated to be a very quick way to sinter ceramics such as alumina to exceptionally high densities. Previous work has shown that microwave post treatment of fully-dense reaction bonded silicon carbide tiles significantly improves the acoustic properties of the tiles. These properties include Poisson`s ratio, Young`s modulus, shear modulus, and bulk modulus.

  6. Interlaced Particle Systems and Tilings of the Aztec Diamond

    NASA Astrophysics Data System (ADS)

    Fleming, Benjamin J.; Forrester, Peter J.

    2011-02-01

    Motivated by the problem of domino tilings of the Aztec diamond, a weighted particle system is defined on N lines, with line j containing j particles. The particles are restricted to lattice points from 0 to N, and particles on successive lines are subject to an interlacing constraint. It is shown that this particle system is exactly solvable, to the extent that not only can the partition function be computed exactly, but so too can the marginal distributions. These results in turn are used to give new derivations within the particle picture of a number of known fundamental properties of the tiling problem, for example that the number of distinct configurations is 2 N( N+1)/2, and that there is a limit to the GUE minor process, which we show at the level of the joint PDFs. It is shown too that the study of tilings of the half Aztec diamond—not known from earlier literature—also leads to an interlaced particle system, now with successive lines 2 n-1 and 2 n ( n=1,…, N/2-1) having n particles. Its exact solution allows for an analysis of the half Aztec diamond tilings analogous to that given for the Aztec diamond tilings.

  7. Analysis of Thick Sandwich Shells with Embedded Ceramic Tiles

    NASA Technical Reports Server (NTRS)

    Davila, Carlos G.; Smith, C.; Lumban-Tobing, F.

    1996-01-01

    The Composite Armored Vehicle (CAV) is an advanced technology demonstrator of an all-composite ground combat vehicle. The CAV upper hull is made of a tough light-weight S2-glass/epoxy laminate with embedded ceramic tiles that serve as armor. The tiles are bonded to a rubber mat with a carefully selected, highly viscoelastic adhesive. The integration of armor and structure offers an efficient combination of ballistic protection and structural performance. The analysis of this anisotropic construction, with its inherent discontinuous and periodic nature, however, poses several challenges. The present paper describes a shell-based 'element-layering' technique that properly accounts for these effects and for the concentrated transverse shear flexibility in the rubber mat. One of the most important advantages of the element-layering technique over advanced higher-order elements is that it is based on conventional elements. This advantage allows the models to be portable to other structural analysis codes, a prerequisite in a program that involves the computational facilities of several manufacturers and government laboratories. The element-layering technique was implemented into an auto-layering program that automatically transforms a conventional shell model into a multi-layered model. The effects of tile layer homogenization, tile placement patterns, and tile gap size on the analysis results are described.

  8. The ATLAS tile calorimeter ROD injector and multiplexer board

    NASA Astrophysics Data System (ADS)

    Valero, A.; Castillo, V.; Ferrer, A.; González, V.; Hernández, Y.; Higón, E.; Sanchís, E.; Solans, C.; Torres, J.; Valls, J. A.

    2011-02-01

    The ATLAS Tile Calorimeter is a sampling detector composed by cells made of iron-scintillator tiles. The calorimeter cell signals are digitized in the front-end electronics and transmitted to the Read-Out Drivers (RODs) at the first level trigger rate. The ROD receives triggered data from up to 9856 channels and provides the energy, phase and quality factor of the signals to the second level trigger. The back-end electronics is divided into four partitions containing eight RODs each. Therefore, a total of 32 RODs are used to process and transmit the data of the TileCal detector. In order to emulate the detector signals in the production and commissioning of ROD modules a board called ROD Injector and Multiplexer Board (RIMBO) was designed. In this paper, the RIMBO main functional blocks, PCB design and the different operation modes are described. It is described the crucial role of the board within the TileCal ROD test-bench in order to emulate the front-end electronics during the validation of ROD boards as well as during the evaluation of the ROD signal reconstruction algorithms. Finally, qualification and performance results for the injection operation mode obtained during the Tile Calorimeter ROD production tests are presented.

  9. Calibration of the Tile Hadronic Calorimeter of ATLAS at LHC

    NASA Astrophysics Data System (ADS)

    Boumediene, Djamel; ATLAS Collaboration

    2015-02-01

    The Tile Calorimeter (TileCal) is the central section of the hadronic calorimeter of the ATLAS experiment. The TileCal provides important information for reconstruction of hadrons, jets, hadronic decays of tau leptons and missing transverse energy. This sampling calorimeter uses iron plates as absorber and scintillating tiles as active medium. The light produced by the passage of charged particles is transmitted by means of wavelength shifting fibers to photomultiplier tubes (PMTs). The TileCal readout is segmented into about 5000 cells (longitudinally and transversally), each of them being read by two PMTs. A brief description of the individual calibration systems (Cs radioactive source, laser, charge injection, minimum bias) is provided. Their combination allows to calibrate each part of the data acquisition chain (optical part, photomultiplier, readout electronics) and to monitor its stability to better than 1%. The procedure for setting and preserving the electromagnetic energy scale during Run 1 data taking is discussed. The issues of linearity and stability of the response, as well as the timing adjustment are also shown.

  10. The ATLAS tile calorimeter performance at the LHC

    SciTech Connect

    Calkins, R.

    2011-07-01

    The Tile Calorimeter (TileCal), the central section of the hadronic calorimeter of the ATLAS experiment, is a key detector component to detect hadrons, jets and taus and to measure the missing transverse energy. Due to the very good muon signal to noise ratio it assists the spectrometer in the identification and reconstruction of muons. TileCal is built of steel and scintillating tiles coupled to optical fibers and read out by photomultipliers. The calorimeter is equipped with systems that allow to monitor and to calibrate each stage of the read out system exploiting different signal sources: laser light, charge injection and a radioactive source. The performance of the calorimeter has been measured and monitored using calibration data, random triggered data, cosmic muons and more importantly LHC collision events. The results presented here assess the absolute energy scale calibration precision, the energy and timing uniformity and the synchronization precision. The ensemble of the results demonstrates a very good understanding of the performance of the Tile Calorimeter that is proved to be well within the design expectations. (authors)

  11. Automated Absorber Attachment for X-ray Microcalorimeter Arrays

    NASA Technical Reports Server (NTRS)

    Moseley, S.; Allen, Christine; Kilbourne, Caroline; Miller, Timothy M.; Costen, Nick; Schulte, Eric; Moseley, Samuel J.

    2007-01-01

    Our goal is to develop a method for the automated attachment of large numbers of absorber tiles to large format detector arrays. This development includes the fabrication of high quality, closely spaced HgTe absorber tiles that are properly positioned for pick-and-place by our FC150 flip chip bonder. The FC150 also transfers the appropriate minute amount of epoxy to the detectors for permanent attachment of the absorbers. The success of this development will replace an arduous, risky and highly manual task with a reliable, high-precision automated process.

  12. Comparative analytical evaluation of the respiratory TaqMan Array Card with real-time PCR and commercial multi-pathogen assays.

    PubMed

    Harvey, John J; Chester, Stephanie; Burke, Stephen A; Ansbro, Marisela; Aden, Tricia; Gose, Remedios; Sciulli, Rebecca; Bai, Jing; DesJardin, Lucy; Benfer, Jeffrey L; Hall, Joshua; Smole, Sandra; Doan, Kimberly; Popowich, Michael D; St George, Kirsten; Quinlan, Tammy; Halse, Tanya A; Li, Zhen; Pérez-Osorio, Ailyn C; Glover, William A; Russell, Denny; Reisdorf, Erik; Whyte, Thomas; Whitaker, Brett; Hatcher, Cynthia; Srinivasan, Velusamy; Tatti, Kathleen; Tondella, Maria Lucia; Wang, Xin; Winchell, Jonas M; Mayer, Leonard W; Jernigan, Daniel; Mawle, Alison C

    2016-02-01

    In this study, a multicenter evaluation of the Life Technologies TaqMan(®) Array Card (TAC) with 21 custom viral and bacterial respiratory assays was performed on the Applied Biosystems ViiA™ 7 Real-Time PCR System. The goal of the study was to demonstrate the analytical performance of this platform when compared to identical individual pathogen specific laboratory developed tests (LDTs) designed at the Centers for Disease Control and Prevention (CDC), equivalent LDTs provided by state public health laboratories, or to three different commercial multi-respiratory panels. CDC and Association of Public Health Laboratories (APHL) LDTs had similar analytical sensitivities for viral pathogens, while several of the bacterial pathogen APHL LDTs demonstrated sensitivities one log higher than the corresponding CDC LDT. When compared to CDC LDTs, TAC assays were generally one to two logs less sensitive depending on the site performing the analysis. Finally, TAC assays were generally more sensitive than their counterparts in three different commercial multi-respiratory panels. TAC technology allows users to spot customized assays and design TAC layout, simplify assay setup, conserve specimen, dramatically reduce contamination potential, and as demonstrated in this study, analyze multiple samples in parallel with good reproducibility between instruments and operators. PMID:26640122

  13. Array comparative genomic hybridization identifies a distinct DNA copy number profile in renal cell cancer associated with hereditary leiomyomatosis and renal cell cancer.

    PubMed

    Koski, Taru A; Lehtonen, Heli J; Jee, Kowan J; Ninomiya, Shinsuke; Joosse, Simon A; Vahteristo, Pia; Kiuru, Maija; Karhu, Auli; Sammalkorpi, Heli; Vanharanta, Sakari; Lehtonen, Rainer; Edgren, Henrik; Nederlof, Petra M; Hietala, Marja; Aittomäki, Kristiina; Herva, Riitta; Knuutila, Sakari; Aaltonen, Lauri A; Launonen, Virpi

    2009-07-01

    Hereditary leiomyomatosis and renal cell cancer (HLRCC) is a tumor predisposition syndrome with cutaneous and uterine leiomyomatosis as well as renal cell cancer (RCC) as its clinical manifestations. HLRCC is caused by heterozygous germline mutations in the fumarate hydratase (fumarase) gene. In this study, we used array comparative genomic hybridization to identify the specific copy number changes characterizing the HLRCC-associated RCCs. The study material comprised formalin-fixed paraffin-embedded renal tumors obtained from Finnish patients with HLRCC. All 11 investigated tumors displayed the papillary type 2 histopathology typical for HLRCC renal tumors. The most frequent copy number changes detected in at least 3/11 (27%) of the tumors were gains in chromosomes 2, 7, and 17, and losses in 13q12.3-q21.1, 14, 18, and X. These findings provide genetic evidence for a distinct copy number profile in HLRCC renal tumors compared with sporadic RCC tumors of the same histopathological subtype, and delineate chromosomal regions that associate with this very aggressive form of RCC. PMID:19373782

  14. Fly ash of mineral coal as ceramic tiles raw material.

    PubMed

    Zimmer, A; Bergmann, C P

    2007-01-01

    The aim of this work was to evaluate the use of mineral coal fly ash as a raw material in the production of ceramic tiles. The samples of fly ash came from Capivari de Baixo, a city situated in the Brazilian Federal State of Santa Catarina. The fly ash and the raw materials were characterized regarding their physical chemical properties, and, based on these results; batches containing fly ash and typical raw materials for ceramic tiles were prepared. The fly ash content in the batches varied between 20 and 80 wt%. Specimens were molded using a uniaxial hydraulic press and were fired. All batches containing ash up to 60 wt% present adequate properties to be classified as several kinds of products in the ISO 13006 standard () regarding its different absorption groups (pressed). The results obtained indicate that fly ash, when mixed with traditional raw materials, has the necessary requirements to be used as a raw material for production of ceramic tiles. PMID:16540298

  15. Identification of Low PT Muon with the Atlas Tile Calorimeter

    NASA Astrophysics Data System (ADS)

    Usai, G.

    2005-02-01

    A method for the identification of muons with the ATLAS Tile Calorimeter is presented and its efficiency and mis-tagging fraction are discussed. It is demonstrated that the Tile Calorimeter can identify muons with good efficiency down to 2 GeV/c transverse momentum, where the stand-alone Muon Spectrometer has zero efficiency. This kinematic region is important for study of B meson physics and in the particular for the CP violating decay channels. The effectiveness of this method is tested, in particular, in the case of bbar {b} events at low LHC luminosity (1033cm-1s-2) with full simulation of experimental conditions. The muon identification with the Tile Calorimeter is fast and can be used for muon selection at the trigger level. A method of exploiting the information available in other ATLAS sub-detectors in order to reduce spurious muon-tag and measure the candidate muon momentum is discussed.

  16. Solare Cell Roof Tile And Method Of Forming Same

    DOEpatents

    Hanoka, Jack I.; Real, Markus

    1999-11-16

    A solar cell roof tile includes a front support layer, a transparent encapsulant layer, a plurality of interconnected solar cells and a backskin layer. The front support layer is formed of light transmitting material and has first and second surfaces. The transparent encapsulant layer is disposed adjacent the second surface of the front support layer. The interconnected solar cells has a first surface disposed adjacent the transparent encapsulant layer. The backskin layer has a first surface disposed adjacent a second surface of the interconnected solar cells, wherein a portion of the backskin layer wraps around and contacts the first surface of the front support layer to form the border region. A portion of the border region has an extended width. The solar cell roof tile may have stand-offs disposed on the extended width border region for providing vertical spacing with respect to an adjacent solar cell roof tile.

  17. Flutter Analysis of the Shuttle Tile Overlay Repair Concept

    NASA Technical Reports Server (NTRS)

    Bey, Kim S.; Scott, Robert C.; Bartels, Robert E.; Waters, William A.; Chen, Roger

    2007-01-01

    The Space Shuttle tile overlay repair concept, developed at the NASA Johnson Space Center, is designed for on-orbit installation over an area of damaged tile to permit safe re-entry. The thin flexible plate is placed over the damaged area and secured to tile at discreet points around its perimeter. A series of flutter analyses were performed to determine if the onset of flutter met the required safety margins. Normal vibration modes of the panel, obtained from a simplified structural analysis of the installed concept, were combined with a series of aerodynamic analyses of increasing levels of fidelity in terms of modeling the flow physics to determine the onset of flutter. Results from these analyses indicate that it is unlikely that the overlay installed at body point 1800 will flutter during re-entry.

  18. Genome-Wide Survey of Cold Stress Regulated Alternative Splicing in Arabidopsis thaliana with Tiling Microarray

    PubMed Central

    Leviatan, Noam; Alkan, Noam; Leshkowitz, Dena; Fluhr, Robert

    2013-01-01

    Alternative splicing plays a major role in expanding the potential informational content of eukaryotic genomes. It is an important post-transcriptional regulatory mechanism that can increase protein diversity and affect mRNA stability. Alternative splicing is often regulated in a tissue-specific and stress-responsive manner. Cold stress, which adversely affects plant growth and development, regulates the transcription and splicing of plant splicing factors. This can affect the pre-mRNA processing of many genes. To identify cold regulated alternative splicing we applied Affymetrix Arabidopsis tiling arrays to survey the transcriptome under cold treatment conditions. A novel algorithm was used for detection of statistically relevant changes in intron expression within a transcript between control and cold growth conditions. A reverse transcription polymerase chain reaction (RT-PCR) analysis of a number of randomly selected genes confirmed the changes in splicing patterns under cold stress predicted by tiling array. Our analysis revealed new types of cold responsive genes. While their expression level remains relatively unchanged under cold stress their splicing pattern shows detectable changes in the relative abundance of isoforms. The majority of cold regulated alternative splicing introduced a premature termination codon (PTC) into the transcripts creating potential targets for degradation by the nonsense mediated mRNA decay (NMD) process. A number of these genes were analyzed in NMD-defective mutants by RT-PCR and shown to evade NMD. This may result in new and truncated proteins with altered functions or dominant negative effects. The results indicate that cold affects both quantitative and qualitative aspects of gene expression. PMID:23776682

  19. Magnetic arrays

    DOEpatents

    Trumper, D.L.; Kim, W.; Williams, M.E.

    1997-05-20

    Electromagnet arrays are disclosed which can provide selected field patterns in either two or three dimensions, and in particular, which can provide single-sided field patterns in two or three dimensions. These features are achieved by providing arrays which have current densities that vary in the windings both parallel to the array and in the direction of array thickness. 12 figs.

  20. Magnetic arrays

    SciTech Connect

    Trumper, David L.; Kim, Won-jong; Williams, Mark E.

    1997-05-20

    Electromagnet arrays which can provide selected field patterns in either two or three dimensions, and in particular, which can provide single-sided field patterns in two or three dimensions. These features are achieved by providing arrays which have current densities that vary in the windings both parallel to the array and in the direction of array thickness.

  1. Thermal contact conductance measurements on Doublet III armor tile graphite

    SciTech Connect

    Doll, D.W.; Reis, E.

    1983-12-01

    Several tests were performed on the Doublet III wall armor tiles to determine the cool-down rate and to evaluate improvements made by changing the conditions at the interface between the graphite tile and the stainless steel backing plate. Thermal diffusivity tests were performed in vacuum on both TiC coated and bare graphite tiles with and without 0.13 mm (.005'') thick silver foil at the interface. The results of the armor tile cool-down tests showed improvement when a 0.13 mm (0.005'') silver foil is used at the interface. At 2.1 x 10/sup 5/ Pa (30 psi) contact pressure, the e-folding cool-down times for a TiC coated tile, bare graphite and bare graphite with a 0.06 mm (0.0035'') silver shim were 10 min., 5.0 min., and 4.1 min., respectively. Tests using high contact pressures showed that the cool-down rates converged to approx. 4.0 min. At this limit, the conduction path along the backing plate to the two cooling tubes controls the heat flow, and no further improvement could be expected. Thermal diffusivity measurements confirmed the results of the cool-down test showing that by introducing a silver foil at the interface, the contact conductance between Poco AXF-5Q graphite and 316 stainless steel could be improved by a factor of three to eight. The tests showed an increasing improvement over a range of temperatures from 25/sup 0/C to 400/sup 0/C. The data provides a technical basis for further applications of graphite tiles to cooled backing plates.

  2. PHASE CHANGE MATERIALS IN FLOOR TILES FOR THERMAL ENERGY STORAGE

    SciTech Connect

    Douglas C. Hittle

    2002-10-01

    Passive solar systems integrated into residential structures significantly reduce heating energy consumption. Taking advantage of latent heat storage has further increased energy savings. This is accomplished by the incorporation of phase change materials into building materials used in passive applications. Trombe walls, ceilings and floors can all be enhanced with phase change materials. Increasing the thermal storage of floor tile by the addition of encapsulated paraffin wax is the proposed topic of research. Latent heat storage of a phase change material (PCM) is obtained during a change in phase. Typical materials use the latent heat released when the material changes from a liquid to a solid. Paraffin wax and salt hydrates are examples of such materials. Other PCMs that have been recently investigated undergo a phase transition from one solid form to another. During this process they will release heat. These are known as solid-state phase change materials. All have large latent heats, which makes them ideal for passive solar applications. Easy incorporation into various building materials is must for these materials. This proposal will address the advantages and disadvantages of using these materials in floor tile. Prototype tile will be made from a mixture of quartz, binder and phase change material. The thermal and structural properties of the prototype tiles will be tested fully. It is expected that with the addition of the phase change material the structural properties will be compromised to some extent. The ratio of phase change material in the tile will have to be varied to determine the best mixture to provide significant thermal storage, while maintaining structural properties that meet the industry standards for floor tile.

  3. A large maize (Zea Mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome

    Technology Transfer Automated Retrieval System (TEKTRAN)

    SNP genotyping arrays have been useful for many applications that require a large number of molecular markers such as high-density genetic mapping, genome-wide association studies (GWAS), and genomic selection for accelerated breeding. We report the establishment of a large SNP array for maize and i...

  4. An automated data management/analysis system for space shuttle orbiter tiles. [stress analysis

    NASA Technical Reports Server (NTRS)

    Giles, G. L.; Ballas, M.

    1982-01-01

    An engineering data management system was combined with a nonlinear stress analysis program to provide a capability for analyzing a large number of tiles on the space shuttle orbiter. Tile geometry data and all data necessary of define the tile loads environment accessed automatically as needed for the analysis of a particular tile or a set of tiles. User documentation provided includes: (1) description of computer programs and data files contained in the system; (2) definitions of all engineering data stored in the data base; (3) characteristics of the tile anaytical model; (4) instructions for preparation of user input; and (5) a sample problem to illustrate use of the system. Description of data, computer programs, and analytical models of the tile are sufficiently detailed to guide extension of the system to include additional zones of tiles and/or additional types of analyses

  5. Cesium monitoring system for ATLAS Tile Hadron Calorimeter

    NASA Astrophysics Data System (ADS)

    Starchenko, E.; Blanchot, G.; Bosman, M.; Cavalli-Sforza, M.; Karyukhin, A.; Kopikov, S.; Miagkov, A.; Nessi, M.; Shalimov, A.; Shalanda, N.; Soldatov, M.; Solodkov, A.; Soloviev, A.; Tsoupko-Sitnikov, V.; Zaitsev, A.

    2002-11-01

    A system to calibrate and monitor ATLAS Barrel Hadronic Calorimeter (TileCal) is under construction at CERN Laboratory. A movable radioactive source driven by a liquid flow travels through the calorimeter body deposing a known energy to the calorimeter cells. Extensive R&D studies have been carried out and the main system parameters are evaluated. The prototypes are currently used for quality check and inter-calibration of the TileCal modules. A distributed control system, hardware as well as corresponding on-line and off-line software is developed.

  6. High-Performance Tiled WMS and KML Web Server

    NASA Technical Reports Server (NTRS)

    Plesea, Lucian

    2007-01-01

    This software is an Apache 2.0 module implementing a high-performance map server to support interactive map viewers and virtual planet client software. It can be used in applications that require access to very-high-resolution geolocated images, such as GIS, virtual planet applications, and flight simulators. It serves Web Map Service (WMS) requests that comply with a given request grid from an existing tile dataset. It also generates the KML super-overlay configuration files required to access the WMS image tiles.

  7. Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays

    PubMed Central

    Stead, Mark B.; Marshburn, Sarah; Mohanty, Bijoy K.; Mitra, Joydeep; Castillo, Lourdes Peňa; Ray, Debashish; van Bakel, Harm; Hughes, Timothy R.; Kushner, Sidney R.

    2011-01-01

    Tiling microarrays have proven to be a valuable tool for gaining insights into the transcriptomes of microbial organisms grown under various nutritional or stress conditions. Here, we describe the use of such an array, constructed at the level of 20 nt resolution for the Escherichia coli MG1655 genome, to observe genome-wide changes in the steady-state RNA levels in mutants defective in either RNase E or RNase III. The array data were validated by comparison to previously published results for a variety of specific transcripts as well as independent northern analysis of additional mRNAs and sRNAs. In the absence of RNase E, 60% of the annotated coding sequences showed either increases or decreases in their steady-state levels. In contrast, only 12% of the coding sequences were affected in the absence of RNase III. Unexpectedly, many coding sequences showed decreased abundance in the RNase E mutant, while more than half of the annotated sRNAs showed changes in abundance. Furthermore, the steady-state levels of many transcripts showed overlapping effects of both ribonucleases. Data are also presented demonstrating how the arrays were used to identify potential new genes, RNase III cleavage sites and the direct or indirect control of specific biological pathways. PMID:21149258

  8. Microstrip monpulse dipole array

    NASA Astrophysics Data System (ADS)

    Miccioli, W.; Toth, J.; Sa, N.; Lewis, M.

    1985-01-01

    The development of a microstrip radiating aperture utilizing multiple microstrip dipole radiators fed by a resonant feed configuration is described. This array combines an efficient capacitively coupled radiator feeding mechanism with a planar power divider configuration to achieve an extremely thin, lightweight antenna aperture. Linear array dipole matching theory and radiator bandwidth improvement techniques are also described. A quadrant based microstrip monopulse antenna was constructed. Experimental data from this array, its subassemblies and individual components are presented and compared to analytical predictions.

  9. Xq26.1-26.2 gain identified on array comparative genomic hybridization in bilateral periventricular nodular heterotopia with overlying polymicrogyria.

    PubMed

    Abe, Yu; Kikuchi, Atsuo; Kobayashi, Satoru; Wakusawa, Keisuke; Tanaka, Soichiro; Inui, Takehiko; Kunishima, Shinji; Kure, Shigeo; Haginoya, Kazuhiro

    2014-12-01

    Periventricular nodular heterotopia (PNH) with overlying polymicrogyria (PMG) is a recently described, developmental brain malformation; however, the causative genes of this malformation have not yet been identified. We report on a 5-year-old Japanese male with bilateral PNH with overlying PMG. He had mild intellectual disability, distinctive facial features, short stature, and microcephaly, with cardiac disorders. No mutation was identified in Sanger sequences for FLNA and ARFGEF2; however, array comparative genomic hybridization revealed an approximately 0.8Mb gain at Xq26.1-26.2, which included three genes: IGSF1, OR13H1, and FIRRE. We identified the same 3-copy gain in his mother; despite identifying the same abnormality in the mother, it must still be considered as a possible cause for the abnormalities, as X-inactivation in the mother could have led to her not expressing the same phenotype. This case may provide important clues for identifying the genes responsible and help in the understanding of the pathogenesis of this disorder. PMID:25052774

  10. Array-based comparative genomic hybridization in early-stage mycosis fungoides: recurrent deletion of tumor suppressor genes BCL7A, SMAC/DIABLO, and RHOF.

    PubMed

    Carbone, Angelo; Bernardini, Laura; Valenzano, Francesco; Bottillo, Irene; De Simone, Clara; Capizzi, Rodolfo; Capalbo, Anna; Romano, Francesca; Novelli, Antonio; Dallapiccola, Bruno; Amerio, Pierluigi

    2008-12-01

    The etiology of mycosis fungoides (MF), the most frequent form of cutaneous T cell lymphoma (CTCL), is poorly understood. No specific genetic aberration has been detected, especially in early-stage disease, possibly due to the clinical and histological heterogeneity of patient series and to the different sources of malignant cells (skin, blood, or lymph node) included in most studies. Frozen skin biopsies from 16 patients with early-stage MF were studied using array-based comparative genomic hybridization. A DNA pool from healthy donors was used as the reference. Results demonstrated recurrent loss of 19, 7p22.1-p22.3, 7q11.1-q11.23, 9q34.12, 12q24.31, and 16q22.3-q23.1, and gain of 8q22.3-q23.1 and 21q22.12. The 12q24.31 region was recurrently deleted in 7/16 patients. Real-time PCR investigation for deletion of genes BCL7A, SMAC/DIABLO, and RHOF-three tumor suppressor genes with a putative role in hematological malignancies-demonstrated that they were deleted in 9, 10, and 13 cases, respectively. The identified genomic alterations and individual genes could yield important insights into the early steps of MF pathogenesis. PMID:18663754

  11. Risk assessment models in genetics clinic for array comparative genomic hybridization: Clinical information can be used to predict the likelihood of an abnormal result in patients

    PubMed Central

    Marano, Rachel M.; Mercurio, Laura; Kanter, Rebecca; Doyle, Richard; Abuelo, Dianne; Morrow, Eric M.; Shur, Natasha

    2013-01-01

    Array comparative genomic hybridization (aCGH) testing can diagnose chromosomal microdeletions and duplications too small to be detected by conventional cytogenetic techniques. We need to consider which patients are more likely to receive a diagnosis from aCGH testing versus patients that have lower likelihood and may benefit from broader genome wide scanning. We retrospectively reviewed charts of a population of 200 patients, 117 boys and 83 girls, who underwent aCGH testing in Genetics Clinic at Rhode Island hospital between 1 January/2008 and 31 December 2010. Data collected included sex, age at initial clinical presentation, aCGH result, history of seizures, autism, dysmorphic features, global developmental delay/intellectual disability, hypotonia and failure to thrive. aCGH analysis revealed abnormal results in 34 (17%) and variants of unknown significance in 24 (12%). Patients with three or more clinical diagnoses had a 25.0% incidence of abnormal aCGH findings, while patients with two or fewer clinical diagnoses had a 12.5% incidence of abnormal aCGH findings. Currently, we provide families with a range of 10–30% of a diagnosis with aCGH testing. With increased clinical complexity, patients have an increased probability of having an abnormal aCGH result. With this, we can provide individualized risk estimates for each patient.

  12. Comparative Correlation Structure of Colon Cancer Locus Specific Methylation: Characterisation of Patient Profiles and Potential Markers across 3 Array-Based Datasets

    PubMed Central

    Barat, Ana; Ruskin, Heather J.

    2015-01-01

    Abnormal DNA-methylation is well known to play an important role in cancer onset and development, and colon cancer is no exception to this rule. Recent years have seen the increased use of large-scale technologies, (such as methylation microarray assays or specific sequencing of methylated DNA), to determine whole genome profiles of CpG island methylation in tissue samples. Comprehensive study of methylation array data from transcriptome high-throughput platforms permits determination of gene methylation markers, important for cancer profiling. Here, three large-scale methylation datasets for colon cancer have been compared to determine locus-specific methylation agreement. These data are from the GEO database, where colon cancer and apparently healthy adjacent tissues are represented by sample sizes 125 and 29 respectively in the first dataset, 24 of each in the second and 118 of each in the third. Several data analysis techniques have been employed, including Clustering, Discriminant Principal Component Analysis, Discriminant Analysis and ROC curves, in order (i) to obtain a better insight on the locus-specific concomitant methylation structures for these diverse data and (ii) to determine a robust potential marker set for indicative screening, drawn from all data taken together. The extent of the agreement between the analysed datasets is reported. Further, potential screening methylation markers, for which methylation profiles are consistent across tissue samples and several datasets, are highlighted and discussed. PMID:26185542

  13. De novo trisomy 20p characterized by array comparative genomic hybridization: report of a novel case and review of the literature.

    PubMed

    Bartolini, Luca; Sartori, Stefano; Lenzini, Elisabetta; Rigon, Chiara; Cainelli, Elisa; Agrati, Cristina; Toldo, Irene; Donà, Marta; Trevisson, Eva

    2013-07-25

    We report on a boy with speech delay, mental retardation, motor clumsiness, hyperactivity, dysmorphic facial features, brachytelephalangy and short stature. Electrocardiogram, echocardiography, renal ultrasound, electroencephalogram, fundoscopic exam and auditory brainstem responses were all normal. Brain magnetic resonance imaging showed a left temporal arachnoid cyst and a small pineal gland cyst. High resolution karyotype and FISH analysis detected a de novo duplication of the short arm of chromosome 20. A molecular characterization of the chromosomal anomaly was performed by array-CGH, confirming a 17.98 Mb duplication of the short arm of chromosome 20 associated with a small duplication on chromosome 3p, that was shown to be maternally inherited. This is one of the few cases of de novo trisomy 20p with extensive workup, characterization at molecular level and close follow-up from the neonatal period to age 30 months. We also compared the phenotype of our patient with that previously reported in literature, therefore contributing to better define the trisomy 20p syndrome and helping pediatricians and geneticists to better counsel families about the developmental prognosis of these children. PMID:23612255

  14. Targeted array comparative genomic hybridization--a new diagnostic tool for the detection of large copy number variations in nemaline myopathy-causing genes.

    PubMed

    Kiiski, K; Laari, L; Lehtokari, V-L; Lunkka-Hytönen, M; Angelini, C; Petty, R; Hackman, P; Wallgren-Pettersson, C; Pelin, K

    2013-01-01

    Nemaline myopathy (NM) constitutes a heterogeneous group of congenital myopathies. Mutations in the nebulin gene (NEB) are the main cause of recessively inherited NM. NEB is one of the most largest genes in human. To date, 68 NEB mutations, mainly small deletions or point mutations have been published. The only large mutation characterized is the 2.5 kb deletion of exon 55 in the Ashkenazi Jewish population. To investigate any copy number variations in this enormous gene, we designed a novel custom comparative genomic hybridization microarray, NM-CGH, targeted towards the seven known genes causative for NM. During the validation of the NM-CGH array we identified two novel deletions in two different families. The first is the largest deletion characterized in NEB to date, (∼53 kb) encompassing 24 exons. The second deletion (1 kb) covers two exons. In both families, the copy number change was the second mutation to be characterized and shown to have been inherited from one of the healthy carrier parents. In addition to these novel mutations, copy number variation was identified in four samples in three families in the triplicate region of NEB. We conclude that this method appears promising for the detection of copy number variations in NEB. PMID:23010307

  15. Prenatal diagnosis of Wolf-Hirschhorn syndrome confirmed by comparative genomic hybridization array: report of two cases and review of the literature.

    PubMed

    Sifakis, Stavros; Manolakos, Emmanouil; Vetro, Annalisa; Kappou, Dimitra; Peitsidis, Panagiotis; Kontodiou, Maria; Garas, Antonios; Vrachnis, Nikolaos; Konstandinidou, Anastasia; Zuffardi, Orsetta; Orru, Sandro; Papoulidis, Ioannis

    2012-01-01

    Wolf-Hirschhorn syndrome (WHS) is a well known genetic condition caused by a partial deletion of the short arm of chromosome 4. The great variability in the extent of the 4p deletion and the possible contribution of additional genetic rearrangements lead to a wide spectrum of clinical manifestations. The majority of the reports of prenatally diagnosed WHS cases are associated with large 4p deletions identified by conventional chromosome analysis; however, the widespread clinical use of novel molecular techniques such as array comparative genomic hybridization (a-CGH) has increased the detection rate of submicroscopic chromosomal aberrations associated with WHS phenotype. We provide a report of two fetuses with WHS presenting with intrauterine growth restriction as an isolated finding or combined with oligohydramnios and abnormal Doppler waveform in umbilical artery and uterine arteries. Standard karyotyping demonstrated a deletion on chromosome 4 in both cases [del(4)(p15.33) and del(4)(p15.31), respectively] and further application of a-CGH confirmed the diagnosis and offered a precise characterization of the genetic defect. A detailed review of the currently available literature on the prenatal diagnostic approach of WHS in terms of fetal sonographic assessment and molecular cytogenetic investigation is also provided. PMID:22373435

  16. Predictions of the Hunt-Lu array model compared with measurements for the growth undercooling of Al{sub 3}Fe dendrites in Al-Fe alloys

    SciTech Connect

    Liang, D.; Jones, H.

    1997-10-01

    Earlier contributions by the authors reported the first measurements of growth temperature as a function of growth velocity V and alloy concentration C{sub 0} for a dendritic intermetallic phase (Al{sub 3}Fe, in Al-rich Al-Fe alloys). Comparison with predictions of the model of Kurz, Giovanola and Trivedi (KGT model) of dendrite growth of a needle gave predicted {Delta}T a factor between 1.1 and 2.5 above the measured values. A subsequent paper presented evidence that the Al{sub 3}Fe dendrite tips were indeed needle-like under the conditions studied, as distinct from the plate-like morphology that develops behind the dendrite tips. The KGT model predicts T{sub G} and {Delta}T on the basis that marginal stability determines the operating condition at the dendrite tip. The present purpose is to compare the measurements with predictions of the more recently developed array model of Hunt and Lu.

  17. Prenatal diagnosis of a partial trisomy 13q (q14-->qter): phenotype, cytogenetics and molecular characterization by spectral karyotyping and array comparative genomic hybridization.

    PubMed

    Machado, I N; Heinrich, J K; Campanhol, C; Rodrigues-Peres, R M; Oliveira, F M; Barini, R

    2010-01-01

    Partial trisomy 13q is an uncommon chromosomal abnormality with variable phenotypic expression. We report prenatal diagnosis of partial trisomy 13q in a fetus with partial agenesis of the cerebellar vermis, partial agenesis of the corpus callosum, hydrops and polyhydramnios. G-banding karyotyping, spectral karyotyping and array comparative genomic hybridization (aCGH) analysis of fetal blood were performed. Cytogenetic analysis of fetal blood displayed 46,XX,add(4)(q28). The parental karyotypes were normal. A girl was delivered at 34 weeks gestation; she died within 2 h. Autopsy confirmed all the prenatal findings and also showed agenesis of the diaphragm. Spectral karyotyping identified the additional material's origin as chromosome 13. aCGH was carried out and showed amplification of distal regions of the long arm of chromosome 13 from region 13q14 to qter. This is the first report of a fetus with molecular characterization of a partial trisomy 13q (q14-->qter), present as a de novo unbalanced translocation at chromosome 4q. This case demonstrates the usefulness of molecular characterization of malformed fetuses for prenatal diagnosis and counseling. PMID:20391329

  18. Parametric Optimization of Heat Transfer from Triangular Fin Array Within a Rectangular Enclosure Using Design of Experiment (DOE): A Comparative Analysis

    NASA Astrophysics Data System (ADS)

    Das, D.; Dwivedi, A.

    2013-10-01

    The increasing numbers of thermal management problems in the various electronic and computing equipments, emphasize the need of effective cooling systems. Although attachment of extended surfaces (fins) is the most proposed way to enhance the heat transfer rate but sometimes addition of fins may deteriorate the heat transfer rate. So, it becomes imperative to optimize the control parameters for maximum heat transfer enhancement. Numerous experimental investigations reveal the Rayleigh number, fin height, and fin spacing are the major influencing design parameters that affect the system performance. Determination of optimum parameters depends on the proper selection of suitable design of experiments at the product development phase. This paper compares and contrasts the general full factorial design approach with Taguchi's design of experiments used for determination of optimum parametric design. These statistical approaches have been applied to the results of an experimental parametric study conducted to investigate the effect of influencing parameters on free convective heat transfer from triangular fin arrays in a horizontally oriented rectangular enclosure.

  19. An Xq22.3 duplication detected by comparative genomic hybridization microarray (Array-CGH) defines a new locus (FGS5) for FG syndrome.

    PubMed

    Jehee, Fernanda Sarquis; Rosenberg, Carla; Krepischi-Santos, Ana Cristina; Kok, Fernando; Knijnenburg, Jeroen; Froyen, Guy; Vianna-Morgante, Angela M; Opitz, John M; Passos-Bueno, Maria Rita

    2005-12-15

    FG syndrome is an X-linked multiple congenital anomalies (MCA) syndrome. It has been mapped to four distinct loci FGS1-4, through linkage analysis (Xq13, Xp22.3, and Xp11.4-p11.3) and based on the breakpoints of an X chromosome inversion (Xq11:Xq28), but so far no gene has been identified. We describe a boy with FG syndrome who has an inherited duplication at band Xq22.3 detected by comparative genomic hybridization microarray (Array-CGH). These duplication maps outside all four loci described so far for FG syndrome, representing therefore a new locus, which we propose to be called FGS5. MID2, a gene closely related to MID1, which is known to be mutated in Opitz G/BBB syndrome, maps within the duplicated segment of our patient. Since FG and Opitz G/BBB syndromes share many manifestations we considered MID2 a candidate gene for FG syndrome. We also discuss the involvement of other potential genes within the duplicated segment and its relationship with clinical symptoms of our patient, as well as the laboratory abnormalities found in his mother, a carrier of the duplication. PMID:16283679

  20. Protective Performance of Plate-Cell Rubber Tiles against Childhood Head Injury on Playground Surfaces — A Finite Element Analysis

    NASA Astrophysics Data System (ADS)

    Chang, Li-Tung; Huang, Tsai-Jeon

    Rubber tiles are commonly used in playgrounds as protective surfacing to reduce the incidence of head injuries in children caused by falling from equipment. This study developed a rubber tile model consisting of a surface layer of solid and a base layer of plate-cell and used it to investigate head injury protective performance. An explicit finite element method based on the experimental data was used to simulate head impact on the rubber tile. The peak acceleration and head injury criterion (HIC) were employed to assess the shock-absorbing capability of the tile. The results showed that compared to the peak acceleration, use of the HIC index provided a more conservative assessment of the shock absorption ability, and ultimately the protection against head injuries. This study supports the feasibility of using rubber tile with plate-cell construction to improve shock-absorbing capability. The plate-cell structure provided an excellent cushioning effect via a lower axial shear stiffness of the surface layer and lower transverse shearing stiffness of the core. The core's dimensions were an important parameter in determining the shearing stiffness. The analysis suggested that the cushioning effect would significantly reduce the peak force on the head from a fall and delay the occurrence of the peak value during impact, resulting in a marked reduction in the peak acceleration and HIC values of the head. Two plate-cell constructions with honeycomb and box-like cores were proposed and validated in this study. The better protective ability of the honeycomb core was attributed to its lower transverse shearing stiffness.

  1. Topological Invariants and CW Complexes of Cartesian Product and Hexagonal Tiling Paces

    NASA Astrophysics Data System (ADS)

    Escudero, Juan García

    2011-09-01

    The cohomology of a class of cartesian product tiling spaces in N dimensions when the inflation factor is a Pisot-Vijayaraghavan unit is analyzed. A CW complex for an hexagonal tiling space is defined in terms of collared tiles for the study of its topological invariants.

  2. Effect of tile effluent on nutrient concentration and retention efficiency in agricultural drainage ditches

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Tile drainage is a common water management practice in many agricultural landscapes in the Midwestern United States. Drainage ditches regularly receive water from agricultural fields through these tile drains. This field-scale study was conducted to determine the impact of tile discharge on ambient ...

  3. A scintillating tile/fiber system for the CDF plug upgrade EM calorimeter

    NASA Astrophysics Data System (ADS)

    Aota, S.; Asakawa, T.; Hara, K.; Hayashi, E.; Kim, S.; Kondo, K.; Kuwabara, T.; Miyashita, S.; Nakada, H.; Nakano, I.; Seiya, Y.; Takikawa, K.; Toyoda, H.; Uchida, T.; Yasuoka, K.; Mishina, M.; Iwai, J.; Albrow, M.; Freeman, J.; Limon, P. J.

    1995-01-01

    The plug calorimeter of the Collider Detector at Fermilab (CDF) [1] will be upgraded, replacing the existing gas calorimeter by a scintillating tile/fiber calorimeter. We have completed R&D for the CDF plug upgrade EM calorimeter. We describe the results of the R&D leading to the final design of the tile/fiber system for the calorimeter. Kuraray SCSN38, Kuraray Y11 and PET film (E65) were chosen as materials for scintillating tiles, wavelength shifting (WLS) fibers and a surface reflector on tiles, respectively, in view of obtaining large light yield and uniform response from a tile/fiber system. We decided fiber groove path in a tile, groove cross-sectional shape and groove depth for each tile to get uniform response from a tile/fiber. For the tile/fiber system of the final design, the average light yield was larger than 3.0 photoelectrons per minimum ionizing particle (MIP), the response uniformity in a tile was less than 2.5% and a total cross talk from a tile to the adjacent tiles was less than 2.0%. These results satisfied our requirements.

  4. GROWTH EVALUATION OF FUNGI (PENICILLIUM AND ASPERGILLUS SPP.) ON CEILING TILES

    EPA Science Inventory

    The paper gives results of an evaluation of the potential for fungal growth on four different ceiling tiles in static chambers. It was found that even new ceiling tiles supported fungal growth under favorable conditions. Used ceiling tiles appeared to be more susceptible to funga...

  5. 40 CFR 427.70 - Applicability; description of the asbestos floor tile subcategory.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... asbestos floor tile subcategory. 427.70 Section 427.70 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) EFFLUENT GUIDELINES AND STANDARDS ASBESTOS MANUFACTURING POINT SOURCE CATEGORY Asbestos Floor Tile Subcategory § 427.70 Applicability; description of the asbestos floor tile...

  6. 40 CFR 427.70 - Applicability; description of the asbestos floor tile subcategory.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... asbestos floor tile subcategory. 427.70 Section 427.70 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) EFFLUENT GUIDELINES AND STANDARDS ASBESTOS MANUFACTURING POINT SOURCE CATEGORY Asbestos Floor Tile Subcategory § 427.70 Applicability; description of the asbestos floor tile...

  7. Array comparative genomic hybridisation (aCGH) analysis of premenopausal breast cancers from a nuclear fallout area and matched cases from Western New York.

    PubMed

    Varma, G; Varma, R; Huang, H; Pryshchepava, A; Groth, J; Fleming, D; Nowak, N J; McQuaid, D; Conroy, J; Mahoney, M; Moysich, K; Falkner, K L; Geradts, J

    2005-09-19

    High-resolution array comparative genomic hybridisation (aCGH) analysis of DNA copy number aberrations (CNAs) was performed on breast carcinomas in premenopausal women from Western New York (WNY) and from Gomel, Belarus, an area exposed to fallout from the 1986 Chernobyl nuclear accident. Genomic DNA was isolated from 47 frozen tumour specimens from 42 patients and hybridised to arrays spotted with more than 3000 BAC clones. In all, 20 samples were from WNY and 27 were from Belarus. In total, 34 samples were primary tumours and 13 were lymph node metastases, including five matched pairs from Gomel. The average number of total CNAs per sample was 76 (range 35-134). We identified 152 CNAs (92 gains and 60 losses) occurring in more than 10% of the samples. The most common amplifications included gains at 8q13.2 (49%), at 1p21.1 (36%), and at 8q24.21 (36%). The most common deletions were at 1p36.22 (26%), at 17p13.2 (26%), and at 8p23.3 (23%). Belarussian tumours had more amplifications and fewer deletions than WNY breast cancers. HER2/neu negativity and younger age were also associated with a higher number of gains and fewer losses. In the five paired samples, we observed more discordant than concordant DNA changes. Unsupervised hierarchical cluster analysis revealed two distinct groups of tumours: one comprised predominantly of Belarussian carcinomas and the other largely consisting of WNY cases. In total, 50 CNAs occurred significantly more commonly in one cohort vs the other, and these included some candidate signature amplifications in the breast cancers in women exposed to significant radiation. In conclusion, our high-density aCGH study has revealed a large number of genetic aberrations in individual premenopausal breast cancer specimens, some of which had not been reported before. We identified a distinct CNA profile for carcinomas from a nuclear fallout area, suggesting a possible molecular fingerprint of radiation-associated breast cancer. PMID:16222315

  8. Task 4 supporting technology. Part 1: Detailed test plan for leading edge tile development. Leading edge material development and testing

    NASA Technical Reports Server (NTRS)

    Hogenson, P. A.; Staszak, Paul; Hinkle, Karrie

    1995-01-01

    This task develops two alternative candidate tile materials for leading edge applications: coated alumina enhanced thermal barrier (AETB) tile and silicone impregnated reusable ceramic ablator (SIRCA) tile. Upon reentry of the X-33/RLV space vehicle, the leading edges experience the highest heating rates and temperatures. The wing leading edge and nose cap experience peak temperatures in the range 2000 to 2700 F. Replacing reinforced carbon-carbon (RCC) with tile-based thermal protection system (TPS) materials is the primary objective. Weight, complexity, coating impact damage, and repairability are among the problems that this tile technology development addresses. The following subtasks will be performed in this development effort: tile coating development; SIRCA tile development; robustness testing of tiles; tile repair development; tile operations/processing; tile leading edge configuration; and life cycle testing.

  9. Task 4 supporting technology. Part 1: Detailed test plan for leading edge tile development. Leading edge material development and testing

    NASA Astrophysics Data System (ADS)

    Hogenson, P. A.; Staszak, Paul; Hinkle, Karrie

    1995-05-01

    This task develops two alternative candidate tile materials for leading edge applications: coated alumina enhanced thermal barrier (AETB) tile and silicone impregnated reusable ceramic ablator (SIRCA) tile. Upon reentry of the X-33/RLV space vehicle, the leading edges experience the highest heating rates and temperatures. The wing leading edge and nose cap experience peak temperatures in the range 2000 to 2700 F. Replacing reinforced carbon-carbon (RCC) with tile-based thermal protection system (TPS) materials is the primary objective. Weight, complexity, coating impact damage, and repairability are among the problems that this tile technology development addresses. The following subtasks will be performed in this development effort: tile coating development; SIRCA tile development; robustness testing of tiles; tile repair development; tile operations/processing; tile leading edge configuration; and life cycle testing.

  10. Array-Based Comparative Genomic Hybridization Analysis Reveals Chromosomal Copy Number Aberrations Associated with Clinical Outcome in Canine Diffuse Large B-Cell Lymphoma

    PubMed Central

    Bresolin, Silvia; Marconato, Laura; Comazzi, Stefano; Te Kronnie, Geertruy; Aresu, Luca

    2014-01-01

    Canine Diffuse Large B-cell Lymphoma (cDLBCL) is an aggressive cancer with variable clinical response. Despite recent attempts by gene expression profiling to identify the dog as a potential animal model for human DLBCL, this tumor remains biologically heterogeneous with no prognostic biomarkers to predict prognosis. The aim of this work was to identify copy number aberrations (CNAs) by high-resolution array comparative genomic hybridization (aCGH) in 12 dogs with newly diagnosed DLBCL. In a subset of these dogs, the genetic profiles at the end of therapy and at relapse were also assessed. In primary DLBCLs, 90 different genomic imbalances were counted, consisting of 46 gains and 44 losses. Two gains in chr13 were significantly correlated with clinical stage. In addition, specific regions of gains and losses were significantly associated to duration of remission. In primary DLBCLs, individual variability was found, however 14 recurrent CNAs (>30%) were identified. Losses involving IGK, IGL and IGH were always found, and gains along the length of chr13 and chr31 were often observed (>41%). In these segments, MYC, LDHB, HSF1, KIT and PDGFRα are annotated. At the end of therapy, dogs in remission showed four new CNAs, whereas three new CNAs were observed in dogs at relapse compared with the previous profiles. One ex novo CNA, involving TCR, was present in dogs in remission after therapy, possibly induced by the autologous vaccine. Overall, aCGH identified small CNAs associated with outcome, which, along with future expression studies, may reveal target genes relevant to cDLBCL. PMID:25372838

  11. Analysis of genomic alterations in neuroblastoma by multiplex ligation-dependent probe amplification and array comparative genomic hybridization: a comparison of results.

    PubMed

    Combaret, Valérie; Iacono, Isabelle; Bréjon, Stéphanie; Schleiermacher, Gudrun; Pierron, Gäelle; Couturier, Jérôme; Bergeron, Christophe; Blay, Jean-Yves

    2012-12-01

    In cases of neuroblastoma, recurring genetic alterations--losses of the 1p, 3p, 4p, and 11q and/or gains of 1q, 2p, and 17q chromosome arms--are currently used to define the therapeutic strategy in therapeutic protocols for low- and intermediate-risk patients. Different genome-wide analysis techniques, such as array comparative genomic hybridization (aCGH) or multiplex ligation-dependent probe amplification (MLPA), have been suggested for detecting chromosome segmental abnormalities. In this study, we compared the results of the two technologies in the analyses of the DNA of tumor samples from 91 neuroblastoma patients. Similar results were obtained with the two techniques for 75 samples (82%). In five cases (5.5%), the MLPA results were not interpretable. Discrepancies between the aCGH and MLPA results were observed in 11 cases (12%). Among the discrepancies, a 18q21.2-qter gain and 16p11.2 and 11q14.1-q14.3 losses were detected only by aCGH. The MLPA results showed that the 7p, 7q, and 14q chromosome arms were affected in six cases, while in two cases, 2p and 17q gains were observed; these results were confirmed by neither aCGH nor fluorescence in situ hybridization (FISH) analysis. Because of the higher sensitivity and specificity of genome-wide information, reasonable cost, and shorter time of aCGH analysis, we recommend the aCGH procedure for the analysis of genomic alterations in neuroblastoma. PMID:23265803

  12. Heterogeneous solute transport in a tile-drained field

    NASA Astrophysics Data System (ADS)

    Basile, A.; Comegna, A.; Coppola, A.; Hassan, S.; Haikal, M. A.; Kassab, M.; Lamaddalena, N.

    2009-04-01

    Preferential flow and its diverse attributes: i) macropore flow; ii) fingered flow; iii) funnel flow, cannot be described by a single process hypothesis and are unpredictable from a priori analysis of field characteristics due to the inability of sampling methods to capture minute features triggering such flows. Most solute transport techniques are expensive and require extensive soil disturbance. Moreover, solute transport in heterogeneous porous media cannot always be conceptualized as being either a convective-dispersive or a stochastic-convective process. One approach to predict subsurface leaching could be the coupling of near surface measurements with a generalized transport model. A steady state field tracer experiment was conducted on a tile-drained "Terra Rossa" plot located in Valenzano (Bari - Italy), to test whether TDR BTCs measured 1 m a part along a transect of 40 m can be used in such a way for accurate prediction of tile's BTC. A Generalized Transfer Function (GTF) (Zhang, 2000) was fitted to the observed concentration a three depths for each site along the transect to identify the transfer function parameters. To account for vertical transport in the unsaturated zone and lateral divergence near the tile, these parameters were used in a 2D model (Utermann, 1990) to predict earlier breakthrough of tile flux concentration. The 2D model predictions of the flux concentrations were similar to the observed values, nearly reproducing the channel-like nature of solute flow.

  13. REACTOR CANAL AFTER IT HAS BEEN TILED. WATER FILLS CANAL ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    REACTOR CANAL AFTER IT HAS BEEN TILED. WATER FILLS CANAL PART WAY TO TOP. CAMERA FACES WEST. INL NEGATIVE NO. 3993-A. Unknown Photographer, 12/28/1951 - Idaho National Engineering Laboratory, Test Reactor Area, Materials & Engineering Test Reactors, Scoville, Butte County, ID

  14. EVALUATION OF FUNGAL GROWTH (PENICILLIUM GLABRUM) ON A CEILING TILE

    EPA Science Inventory

    The paper gives results of a study employing static chambers to study the impact of different equilibrium relative humidities (RHs) and moisture conditions on the ability of a new ceiling tile to support fungal growth. Amplification of the mold, Penicillium glabrum, occurred at R...

  15. Nutrient Transport in Tile-Fed Drainage Ditches

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Drainage ditches receive water and associated contaminants from agricultural fields via surface runoff or sub-surface tile drains. Little consideration has been given to the processes affecting nutrient transport once in surface water. The objective of this research was to evaluate the nutrient fa...

  16. Kinetics of the clay roofing tile convection drying

    SciTech Connect

    Thomas, S. . Faculty of Food Technology); Skansi, D. . Faculty of Chemical Engineering and Technology); Sokele, M. . Telecommunications Center)

    1993-01-01

    Kinetics of the convection drying process of flat tile has been investigated experimentally in an industrial tunnel dryer. Several velocities of wet tile movement through the dryer were tested to obtain maximum allowable drying rate curve. As there are various models to describe the kinetics of convection drying, finding a model that would fairly well approximate the kinetics of the whole drying process was part of the research. Especially the polynomial and exponential models were tested. It was found that exponential model of the type: B(t) = (a[minus]B[sub e])[center dot]EXP([minus]bt[sup 2])+B[sub e], ([minus]dB(t)/dt) = 2bt(B(t)[minus]B[sub e]) significantly correlates the kinetics of the whole tile drying process. Applying the maximum allowable drying rate curve obtained for flat tile in the first period of drying, a grapho-analytic model for the optimal conducting of the process has been developed.

  17. EVALUATION OF FUNGAL GROWTH (PENICILLIUM GLABRUM) ON A CEILING TILE

    EPA Science Inventory

    The paper gives results of a study employing static chambers to study the impact of different equilibrium relative humidities (RHs) and moisture conditions on the ability of a new ceiling tile to support fungal growth. mplification of the mold, Penicillium glabrum, occurred at RH...

  18. In-Field Bioreactor for Removing Nitrate from Tile Drainage

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Nitrate in water leaving subsurface drain ('tile') systems often exceeds the 10 mg-N L-1 maximum contaminant level (MCL) set by the U.S. EPA for drinking water and has been implicated in contributing to the hypoxia problem within the Gulf of Mexico. Much of the NO3 from agricultural lands impacting ...

  19. A design rationale for NASA TileWorld

    NASA Technical Reports Server (NTRS)

    Philips, Andrew B.; Swanson, Keith J.; Drummond, Mark E.; Bresina, John L.

    1991-01-01

    Automated systems that can operate in unrestricted real-world domains are still well beyond current computational capabilities. This paper argues that isolating essential problem characteristics found in real-world domains allows for a careful study of how particular control systems operate. By isolating essential problem characteristics and studying their impact on autonomous system performance, we should be able to more quickly deliver systems for practical real-world problems. For our research on planning, scheduling, and control, we have selected three particular domain attributes to study: exogenous events, uncertain action outcome, and metric time. We are not suggesting that studies of these attributes in isolation are sufficient to guarantee the obvious goals of good methodology, brilliant architectures, or first-class results; however, we are suggesting that such isolation facilitates the achievement of these goals. To study these attributes, we have developed the NASA TileWorld. We describe the NASA TileWorld simulator in general terms, present an example NASA TileWorld problem, and discuss some of our motivations and concerns for NASA TileWorld.

  20. Phosphorus modeling in tile drained agricultural systems using APEX

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Phosphorus losses through tile drained systems in agricultural landscapes may be causing the persistent eutrophication problems observed in surface water. The purpose of this paper is to evaluate the state of the science in the Agricultural Policy/Environmental eXtender (APEX) model related to surf...

  1. Increasing the frost resistance of facade glazed tiles

    SciTech Connect

    Egerev, V.M.; Zotov, S.N.; Romanova, G.P.

    1986-09-01

    The authors investigate the protective properties of a coating of boron oxides and zirconium oxides applied as a glaze to ceramic tiles by conducting a series of tests to determine the frost resistance, the propensity to absorb water, the moisture expansion coefficient, the fracture behavior, and the effect of thermal cycling on the oxides. Results are graphed and tabulated.

  2. Contributions of systematic tile drainage to watershed scale phosphorus transport

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Phosphorus (P) transport from agricultural fields continues be a focal point for addressing harmful algal blooms (HABs) and nuisance algae in freshwater systems throughout the world. In humid, poorly drained regions, attention has turned to P delivery through subsurface tile drainage. Research on th...

  3. Water Quality from Grass-Based Dairy Farm Tile Lines

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Subsurface water quality from agricultural systems varies with the type of system and management. Systems with high inputs from fertilizer and/or manure may have high nutrient levels, e.g. NO3-N, in subsurface water. This study investigates the water quality from tile lines on grass-based dairy fa...

  4. Tiled architecture of a CNN-mostly IP system

    NASA Astrophysics Data System (ADS)

    Spaanenburg, Lambert; Malki, Suleyman

    2009-05-01

    Multi-core architectures have been popularized with the advent of the IBM CELL. On a finer grain the problems in scheduling multi-cores have already existed in the tiled architectures, such as the EPIC and Da Vinci. It is not easy to evaluate the performance of a schedule on such architecture as historical data are not available. One solution is to compile algorithms for which an optimal schedule is known by analysis. A typical example is an algorithm that is already defined in terms of many collaborating simple nodes, such as a Cellular Neural Network (CNN). A simple node with a local register stack together with a 'rotating wheel' internal communication mechanism has been proposed. Though the basic CNN allows for a tiled implementation of a tiled algorithm on a tiled structure, a practical CNN system will have to disturb this regularity by the additional need for arithmetical and logical operations. Arithmetic operations are needed for instance to accommodate for low-level image processing, while logical operations are needed to fork and merge different data streams without use of the external memory. It is found that the 'rotating wheel' internal communication mechanism still handles such mechanisms without the need for global control. Overall the CNN system provides for a practical network size as implemented on a FPGA, can be easily used as embedded IP and provides a clear benchmark for a multi-core compiler.

  5. HPLC determination of fumonisin mycotoxins in maize: a comparative study of naphthalene-2,3-dicarboxaldehyde and o-phthaldialdehyde derivatization reagents for fluorescence and diode array detection.

    PubMed

    Ndube, Ncediwe; van der Westhuizen, Liana; Green, Ivan R; Shephard, Gordon S

    2011-08-01

    Fumonisins are mycotoxins produced by various species of Fusarium and occur naturally in contaminated maize and maize-based foods. Ingestion of fumonisins has considerable health implications for humans and animals. Since fumonisins lack a useful chromophore or fluorophore, their determination in maize is routinely achieved via HPLC with fluorescence detection (FLD) after precolumn derivatization. This study optimized naphthalene-2,3-dicarboxaldehyde (NDA) derivatization of fumonisins in naturally contaminated maize following strong anion exchange (SAX) solid phase extraction (SPE) clean-up and utilizing diode array detection (DAD) as a practical alternative simultaneously to FLD. The limit of detection (LOD) for fumonisin B(1) (FB(1)), fumonisin B(2) (FB(2)) and fumonisin B(3) (FB(3)) with FLD was 0.11 ng, 0.50 ng and 0.27 ng, respectively, and with DAD it was 13.8 ng, 12.5 ng and 6.6 ng, respectively injected on column. The coefficient of variation (CV, n = 6) for FB(1), FB(2) and FB(3) in a naturally contaminated samples obtained with FLD was 2.6%, 1.8% and 5.3%, respectively, compared to 6.0%, 3.4% and 9.5%, respectively, obtained with DAD. Subsequently the optimized NDA derivatization was compared to the widely used o-phthaldialdehyde (OPA) derivatization agent as well as alternative sample clean-up with immunoaffinity column (IAC) by analyzing naturally contaminated maize samples (n = 15) ranging in total fumonisin (TFB = FB(1)+FB(2)+FB(3)) levels from 106 to 6000 μg/kg. After immunoaffinity column clean-up of extracted samples, the recoveries of spiked maize samples for NDA-FLD of FB(1), FB(2) and FB(3) were 62%, 94% and 64%, respectively. NDA proved to be an effective derivatization reagent of fumonisin in naturally contaminated maize samples following IAC clean-up, except for DAD at TFB levels below 1000 μg/kg. In contrast NDA derivatization following SAX clean-up produced results comparable to OPA only for levels below 1000 μg/kg. Aside from the

  6. Breakthrough of two pesticides into tile drain and shallow groundwater: comparison of tile drain reaction and soil profiles within a field scale irrigation experiment

    NASA Astrophysics Data System (ADS)

    Klaus, Julian; Zehe, Erwin; Elsner, Martin; Palm, Juliane; Schneider, Dorothee; Schröder, Boris; Steinbeiss, Sibylle; West, Stephanie

    2010-05-01

    Preferential flow in macropores is a key process which strongly affects infiltration and may cause rapid transport of pesticides into depths of 80 to 150 cm. At these depths they experience a much slower degradation, may leach into shallow groundwater or enter a tile-drain and are transported into surface water bodies. Therefore, preferential transport might be an environmental problem, if the topsoil is bypassed, which has been originally thought to act as a filter to protect the subsoil and shallow groundwater. To investigate the behaviour of two pesticides with different chemical characteristics and to compare their transport behaviour in soil and into the tile drain an irrigation experiment was performed on a 400 m² field site. The experimental plot is located in the Weiherbach valley, south-west Germany, which basic geology consists of Loess and Keuper layers, the soil at the test site is a gleyic Colluvisol. The distance of the irrigation site to the Weiherbach brook is approximately 12 m, the field is drained with a tile-drain in about 1.2 m depth and shows discharge over the entire year. Three hours before the irrigation started, the farmer applied a pesticide solution consisting of Isoproturon (80 g) and Flufenacet (20 g) (IPU and FLU) according to conventional agricultural practice on the field plot. The irrigation took place in three time blocks (80 min, 60 min, 80 min) with in total 33.6 mm of precipitation. During the first block 1600 g of Bromide were mixed in the irrigation water. The drainage outlet was instrumented with a pressure probe. About 50 water samples ware taken during the experimental day, and several samples more the days after the experiment. They were analysed for the pesticides, bromide and water isotopes. In the two days after the experiment three soil profiles were excavated and soil samples were taken on a 10x10 cm² scheme. One week after the experiment two additional profiles were excavated. The soil was analysed for IPU, FLU

  7. Designing linear systolic arrays

    SciTech Connect

    Kumar, V.K.P.; Tsai, Y.C. . Dept. of Electrical Engineering)

    1989-12-01

    The authors develop a simple mapping technique to design linear systolic arrays. The basic idea of the technique is to map the computations of a certain class of two-dimensional systolic arrays onto one-dimensional arrays. Using this technique, systolic algorithms are derived for problems such as matrix multiplication and transitive closure on linearly connected arrays of PEs with constant I/O bandwidth. Compared to known designs in the literature, the technique leads to modular systolic arrays with constant hardware in each PE, few control lines, lexicographic data input/output, and improved delay time. The unidirectional flow of control and data in this design assures implementation of the linear array in the known fault models of wafer scale integration.

  8. Reconfigurable mosaic annular arrays.

    PubMed

    Thomenius, Kai E; Wodnicki, Robert; Cogan, Scott D; Fisher, Rayette A; Burdick, Bill; Smith, L Scott; Khuri-Yakub, Pierre; Lin, Der-Song; Zhuang, Xuefeng; Bonitz, Barry; Davies, Todd; Thomas, Glen; Woychik, Charles

    2014-07-01

    Mosaic annular arrays (MAA) based on reconfigurable array (RA) transducer electronics assemblies are presented as a potential solution for future highly integrated ultrasonic transducer subsystems. Advantages of MAAs include excellent beam quality and depth of field resulting from superior elevational focus compared with 1-D electronically scanned arrays, as well as potentially reduced cost, size, and power consumption resulting from the use of a limited number of beamforming channels for processing a large number of subelements. Specific design tradeoffs for these highly integrated arrays are discussed in terms of array specifications for center frequency, element pitch, and electronic switch-on resistance. Large-area RAs essentially function as RC delay lines. Efficient architectures which take into account RC delay effects are presented. Architectures for integration of the transducer and electronics layers of large-area array implementations are reviewed. PMID:24960699

  9. Fixed tile rate codec for bandwidth saving in video processors

    NASA Astrophysics Data System (ADS)

    Lachine, Vladimir; Dinh, Chon-Tam Le; Le, Dinh Kha; Wong, Jeffrey

    2014-02-01

    The paper presents an image compression circuit for bandwidth saving in video display processors. This is intra frame tile based compression algorithm offering visually lossless quality for compression rates between 1.5 and 2.5. RGB and YCbCr (4:4:4, 4:2:2 and 4:2:0) video formats are supported for 8/10 bits video signals. The Band Width Compressor (BWC) consists of Lossless Compressor (LC) and Quantization Compressor (QC) that generate output bit streams for tiles of pixels. Size of output bit stream generated for a tile by the LC may be less or greater than a required size of output memory block. The QC generates bit stream that always fits output memory block of the required size. The output bit stream generated by the LC is transmitted if its size is less than the required size of the output memory block. Otherwise, the output bit stream generated by the QC is transmitted. The LC works on pixel basis. A difference between original and predicted pixel's values for each pixel of a tile is encoded as prefix and suffix. The prefix is encoded by means of variable length code, and suffix is encoded as is. The QC divides a tile of pixels on a set of blocks and quantizes pixels of each block independently of the other blocks. The number of quantization bits for all pixels of a block depends on standard deviation calculated over the block. A difference between pixel's value and average value over the block is quantized and transmitted.

  10. Kokkos Array

    Energy Science and Technology Software Center (ESTSC)

    2012-09-12

    The Kokkos Array library implements shared-memory array data structures and parallel task dispatch interfaces for data-parallel computational kernels that are performance-portable to multicore-CPU and manycore-accelerator (e.g., GPGPU) devices.

  11. Systolic arrays

    SciTech Connect

    Moore, W.R.; McCabe, A.P.H.; Vrquhart, R.B.

    1987-01-01

    Selected Contents of this book are: Efficient Systolic Arrays for the Solution of Toeplitz Systems, The Derivation and Utilization of Bit Level Systolic Array Architectures, an Efficient Systolic Array for Distance Computation Required in a Video-Codec Based Motion-Detection, On Realizations of Least-Squares Estimation and Kalman Filtering by Systolic Arrays, and Comparison of Systolic and SIMD Architectures for Computer Vision Computations.

  12. Nanocylinder arrays

    DOEpatents

    Tuominen, Mark; Schotter, Joerg; Thurn-Albrecht, Thomas; Russell, Thomas P.

    2007-03-13

    Pathways to rapid and reliable fabrication of nanocylinder arrays are provided. Simple methods are described for the production of well-ordered arrays of nanopores, nanowires, and other materials. This is accomplished by orienting copolymer films and removing a component from the film to produce nanopores, that in turn, can be filled with materials to produce the arrays. The resulting arrays can be used to produce nanoscale media, devices, and systems.

  13. Nanocylinder arrays

    DOEpatents

    Tuominen, Mark; Schotter, Joerg; Thurn-Albrecht, Thomas; Russell, Thomas P.

    2009-08-11

    Pathways to rapid and reliable fabrication of nanocylinder arrays are provided. Simple methods are described for the production of well-ordered arrays of nanopores, nanowires, and other materials. This is accomplished by orienting copolymer films and removing a component from the film to produce nanopores, that in turn, can be filled with materials to produce the arrays. The resulting arrays can be used to produce nanoscale media, devices, and systems.

  14. Evaluation of the Hooghoudt and Kirkham tile drain equations in SWAT to simulate tile flow and nitrate-nitrogen

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Subsurface tile drains in agricultural systems of Midwest U.S. are a major contributor of nitrate-N (NO3-N) loadings to hypoxic conditions in the Gulf of Mexico. Existing soil moisture retention parameter computation algorithm in the widely used Soil and Water Assessment Tool (SWAT) model is known t...

  15. Tile-in-ONE An integrated framework for the data quality assessment and database management for the ATLAS Tile Calorimeter

    NASA Astrophysics Data System (ADS)

    Cunha, R.; Solans, C.; Sivolella, A.; Ferreira, F.; Maidantchik, C.

    2014-06-01

    In order to ensure the proper operation of the ATLAS Tile Calorimeter and assess the quality of data, many tasks are performed by means of several tools which have been developed independently. The features are displayed into standard dashboards, dedicated to each working group, covering different areas, such as Data Quality and Calibration.

  16. High-resolution oligonucleotide array comparative genomic hybridization study and methylation status of the RPS14 gene in de novo myelodysplastic syndromes.

    PubMed

    Borze, Ioana; Juvonen, Eeva; Ninomiya, Shinsuke; Jee, Kowan Ja; Elonen, Erkki; Knuutila, Sakari

    2010-03-01

    In myelodysplastic syndromes (MDS), close to one half of patients do not have any visible karyotypic change. In order to study submicroscopic genomic alterations, we applied high-resolution array comparative genomic hybridization techniques (aCGH) in 37 patients with de novo MDS. Furthermore, we studied the methylation status of the RPS14 gene in 5q deletion (5q21.3q33.1) in 24 patients. In all, 21 of the 37 patients (57%) had copy number alterations. The most frequent copy number losses with minimal common overlapping areas were 5q21.3q33.1 (21%) and 7q22.1q33 (19%); the most frequent copy number gain was gain of the whole chromosome 8 (8%). Recurrent, but less frequent copy number losses were detected in two cases each: 11q14.1q22.1, 11q22.3q24.2, 12p12.2p13.31, 17p13.2, 18q12.1q12.2, 18q12.3q21.3, 18q21.2qter, and 20q11.23q12; the gains 8p23.2pter, 8p22p23.1, 8p12p21.1, and 8p11.21q21.2 were similarly found in two cases each. No homozygous losses or amplifications were observed. The RPS14 gene was not methylated in any of the patients. PMID:20193850

  17. A digital-receiver for the MurchisonWidefield Array

    NASA Astrophysics Data System (ADS)

    Prabu, Thiagaraj; Srivani, K. S.; Roshi, D. Anish; Kamini, P. A.; Madhavi, S.; Emrich, David; Crosse, Brian; Williams, Andrew J.; Waterson, Mark; Deshpande, Avinash A.; Shankar, N. Udaya; Subrahmanyan, Ravi; Briggs, Frank H.; Goeke, Robert F.; Tingay, Steven J.; Johnston-Hollitt, Melanie; R, Gopalakrishna M.; Morgan, Edward H.; Pathikulangara, Joseph; Bunton, John D.; Hampson, Grant; Williams, Christopher; Ord, Stephen M.; Wayth, Randall B.; Kumar, Deepak; Morales, Miguel F.; deSouza, Ludi; Kratzenberg, Eric; Pallot, D.; McWhirter, Russell; Hazelton, Bryna J.; Arcus, Wayne; Barnes, David G.; Bernardi, Gianni; Booler, T.; Bowman, Judd D.; Cappallo, Roger J.; Corey, Brian E.; Greenhill, Lincoln J.; Herne, David; Hewitt, Jacqueline N.; Kaplan, David L.; Kasper, Justin C.; Kincaid, Barton B.; Koenig, Ronald; Lonsdale, Colin J.; Lynch, Mervyn J.; Mitchell, Daniel A.; Oberoi, Divya; Remillard, Ronald A.; Rogers, Alan E.; Salah, Joseph E.; Sault, Robert J.; Stevens, Jamie B.; Tremblay, S.; Webster, Rachel L.; Whitney, Alan R.; Wyithe, Stuart B.

    2015-03-01

    An FPGA-based digital-receiver has been developed for a low-frequency imaging radio interferometer, the Murchison Widefield Array (MWA). The MWA, located at the Murchison Radio-astronomy Observatory (MRO) in Western Australia, consists of 128 dual-polarized aperture-array elements (tiles) operating between 80 and 300 MHz, with a total processed bandwidth of 30.72 MHz for each polarization. Radio-frequency signals from the tiles are amplified and band limited using analog signal conditioning units; sampled and channelized by digital-receivers. The signals from eight tiles are processed by a single digital-receiver, thus requiring 16 digital-receivers for the MWA. The main function of the digital-receivers is to digitize the broad-band signals from each tile, channelize them to form the sky-band, and transport it through optical fibers to a centrally located correlator for further processing. The digital-receiver firmware also implements functions to measure the signal power, perform power equalization across the band, detect interference-like events, and invoke diagnostic modes. The digital-receiver is controlled by high-level programs running on a single-board-computer. This paper presents the digital-receiver design, implementation, current status, and plans for future enhancements.

  18. Life considerations of the shuttle orbiter densified-tile thermal protection system

    NASA Technical Reports Server (NTRS)

    Cooper, P. A.; Sawyer, J. W.

    1983-01-01

    The Shuttle orbiter themal protection system (TPS) incorporates ceramic reusable surface insulation tiles bonded to the orbiter substructure through a strain isolation pad. Densification of the bonding surface of the tiles increases the static strength of the tiles. The densification proces does not, however, necessarily lead to an equivalent increase in fatigue strength. Investigation of the expected lifetime of densified tile TPS under both sinusoidal loading and random loading simulating flight conditions indicates that the strain isolation pads are the weakest components of the TPS under fatigue loading. The felt pads loosen under repetitive loading and, in highly loaded regions, could possibly cause excessive step heights between tiles causing burning of the protective insulation between tiles. A method of improving the operational lifetime of the TPS by using a strain isolation pad with increased stiffness is presented as is the consequence of the effect of increased stiffness on the tile inplane strains and transverse stresses.

  19. Receiver architecture of the thousand-element array (THEA)

    NASA Astrophysics Data System (ADS)

    Kant, G. W.; Kokkeler, A. B.; Smolders, A. B.; Gunst, A. W.

    2000-07-01

    As part of the development of a new international radio- telescope SKA (Square Kilometer Array), an outdoor phased- array prototype, the THousand Element Array (THEA), is being developed at NFRA. THEA is a phased array with 1024 active elements distributed on a regular grid over a surface of approximately 16 m2. The array is organized into 16 units denoted as tiles. THEA operates in the frequency band from 750 to 1500 MHz. On a tile the signals from 64 antenna elements are converted into two independent RF beams. Two times 16 beams can be made simultaneously with full sensitivity by the real-time digital beam former of the THEA system. At the output of each tile the analog RF signal from a beam is converted into a 2 X 12-bit digital quadrature representation by a receiver system. A double super-heterodyne architecture is used to mix the signal band of interest to an intermediate frequency of 210 MHz. The IF-signal is shifted to baseband by means of a partly digitally implemented I/Q mixer scheme. After a quadrature mixer stage, the I and Q signals are digitized by means of 12 bit A/D converters at 40 MS/s. Implementing a part of the mixing scheme digitally offers the flexibility to use different I/Q architectures, e.g. Hartley and Weaver mixer setups. This way the effect of RFI in different mixing architectures can be analyzed. After the digital processing, the samples are multiplexed, serialized and transported over fibers to the central adaptive digital beam former unit where the signals from all tiles are combined giving 32 beams. This paper focuses on the design choices and the final implementation of the THEA system. In particular, the receiver architecture is addressed. A digital solution is presented, which enables switching between Hartley and a Weaver based mixer scheme.

  20. Denitrification in the shallow ground water of a tile-drained, agricultural watershed

    USGS Publications Warehouse

    Mehnert, E.; Hwang, H.-H.; Johnson, T.M.; Sanford, R.A.; Beaumont, W.C.; Holm, T.R.

    2007-01-01

    Nonpoint-source pollution of surface water by N is considered a major cause of hypoxia. Because Corn Belt watersheds have been identified as major sources of N in the Mississippi River basin, the fate and transport of N from midwestern agricultural watersheds have received considerable interest. The fate and transport of N in the shallow ground water of these watersheds still needs additional research. Our purpose was to estimate denitrification in the shallow ground water of a tile-drained, Corn Belt watershed with fine-grained soils. Over a 3-yr period, N was monitored in the surface and ground water of an agricultural watershed in central Illinois. A significant amount of N was transported past the tile drains and into shallow ground water. The ground water nitrate was isotopically heavier than tile drain nitrate, which can be explained by denitrification in the subsurface. Denitrifying bacteria were found at depths to 10 m throughout the watershed. Laboratory and push-pull tests showed that a significant fraction of nitrate could be denitrified rapidly. We estimated that the N denitrified in shallow ground water was equivalent to 0.3 to 6.4% of the applied N or 9 to 27% of N exported via surface water. These estimates varied by water year and peaked in a year of normal precipitation after 2 yr of below average precipitation. Three years of monitoring data indicate that shallow ground water in watersheds with fine-grained soils may be a significant N sink compared with N exported via surface water. ?? ASA, CSSA, SSSA.

  1. Water and Nutrient Balances in a Large Tile-Drained Agricultural Catchment: A Distributed Modeling Study

    SciTech Connect

    Li, Hongyi; Sivapalan, Murugesu; Tian, Fuqiang; Liu, Dengfeng

    2010-11-16

    This paper presents the development and implementation of a distributed model of coupled water nutrient processes, based on the representative elementary watershed (REW) approach, to the Upper Sangamon River Basin, a large, tile-drained agricultural basin located in central Illinois, mid-west of USA. Comparison of model predictions with the observed hydrological and biogeochemical data, as well as regional estimates from literature studies, shows that the model is capable of capturing the dynamics of water, sediment and nutrient cycles reasonably well. The model is then used as a tool to gain insights into the physical and chemical processes underlying the inter- and intra-annual variability of water and nutrient balances. Model predictions show that about 80% of annual runoff is contributed by tile drainage, while the remainder comes from surface runoff (mainly saturation excess flow) and subsurface runoff. It is also found that, at the annual scale nitrogen storage in the soil is depleted during wet years, and is supplemented during dry years. This carryover of nitrogen storage from dry year to wet year is mainly caused by the lateral loading of nitrate. Phosphorus storage, on the other hand, is not affected much by wet/dry conditions simply because the leaching of it is very minor compared to the other mechanisms taking phosphorous out of the basin, such as crop harvest. The analysis then turned to the movement of nitrate with runoff. Model results suggested that nitrate loading from hillslope into the channel is preferentially carried by tile drainage. Once in the stream it is then subject to in-stream denitrification, the significant spatio-temporal variability of which can be related to the variation of the hydrologic and hydraulic conditions across the river network.

  2. Optimal Non-Invasive Fault Classification Model for Packaged Ceramic Tile Quality Monitoring Using MMW Imaging

    NASA Astrophysics Data System (ADS)

    Agarwal, Smriti; Singh, Dharmendra

    2016-04-01

    Millimeter wave (MMW) frequency has emerged as an efficient tool for different stand-off imaging applications. In this paper, we have dealt with a novel MMW imaging application, i.e., non-invasive packaged goods quality estimation for industrial quality monitoring applications. An active MMW imaging radar operating at 60 GHz has been ingeniously designed for concealed fault estimation. Ceramic tiles covered with commonly used packaging cardboard were used as concealed targets for undercover fault classification. A comparison of computer vision-based state-of-the-art feature extraction techniques, viz, discrete Fourier transform (DFT), wavelet transform (WT), principal component analysis (PCA), gray level co-occurrence texture (GLCM), and histogram of oriented gradient (HOG) has been done with respect to their efficient and differentiable feature vector generation capability for undercover target fault classification. An extensive number of experiments were performed with different ceramic tile fault configurations, viz., vertical crack, horizontal crack, random crack, diagonal crack along with the non-faulty tiles. Further, an independent algorithm validation was done demonstrating classification accuracy: 80, 86.67, 73.33, and 93.33 % for DFT, WT, PCA, GLCM, and HOG feature-based artificial neural network (ANN) classifier models, respectively. Classification results show good capability for HOG feature extraction technique towards non-destructive quality inspection with appreciably low false alarm as compared to other techniques. Thereby, a robust and optimal image feature-based neural network classification model has been proposed for non-invasive, automatic fault monitoring for a financially and commercially competent industrial growth.

  3. Real-time optimal adaptation for planetary geometry and texture: 4-8 tile hierarchies.

    PubMed

    Hwa, Lok M; Duchaineau, Mark A; Joy, Kenneth I

    2005-01-01

    The real-time display of huge geometry and imagery databases involves view-dependent approximations, typically through the use of precomputed hierarchies that are selectively refined at runtime. A classic motivating problem is terrain visualization in which planetary databases involving billions of elevation and color values are displayed on PC graphics hardware at high frame rates. This paper introduces a new diamond data structure for the basic selective-refinement processing, which is a streamlined method of representing the well-known hierarchies of right triangles that have enjoyed much success in real-time, view-dependent terrain display. Regular-grid tiles are proposed as the payload data per diamond for both geometry and texture. The use of 4-8 grid refinement and coarsening schemes allows level-of-detail transitions that are twice as gradual as traditional quadtree-based hierarchies, as well as very high-quality low-pass filtering compared to subsampling-based hierarchies. An out-of-core storage organization is introduced based on Sierpinski indices per diamond, along with a tile preprocessing framework based on fine-to-coarse, same-level, and coarse-to-fine gathering operations. To attain optimal frame-to-frame coherence and processing-order priorities, dual split and merge queues are developed similar to the Realtime Optimally Adapting Meshes (ROAM) Algorithm, as well as an adaptation of the ROAM frustum culling technique. Example applications of lake-detection and procedural terrain generation demonstrate the flexibility of the tile processing framework. PMID:16138547

  4. Heat as a Tracer for Estimation of Soil Drainage Following Irrigation Above a Tile Drain System

    NASA Astrophysics Data System (ADS)

    Callaghan, M. V.; Bentley, L. R.; Cey, E. E.

    2009-05-01

    Salt-affected soil is one of the most common environmental issues facing the petroleum hydrocarbon industry. Large quantities of brines are often co-produced with gas and oil and have been introduced into the environment through, for example, flare pits, drilling operations and pipe line breaks. Salt must be flushed from the soil and tile drain systems can be used to collect salt water which is then be routed for disposal. An accelerated remediation experiment by soil flushing over a 2 m deep tile drain system was monitored by tensiometers, and thermocouples. Water table elevation was monitored with pressure transducers. A 20 m by 20 m experimental plot was irrigated with 10 m3 of water on each of three consecutive days for an approximate total of 75 mm of water. The irrigation event was repeated three times over a period of 4 weeks. Due to a lack of access to the individual tile drains, direct measurement of drainage rates was not possible. One component of evaluating the success of the accelerated remediation experiment is the fraction of applied irrigation water that infiltrated to depth. Drainage rates beneath the irrigated plot were estimated by heat transport modeling using HYDRUS-1D, a numerical code for the solution of Richards unsaturated flow equation and the heat equation. Temperature and soil matric potential time series were recorded beneath the irrigated plot and at a control location at four depths, 0.3, 0.6, 1.0, and 1.5 m, at 15 minute intervals. Data was recorded for the duration of the irrigation period and for 8 weeks following. The temperature time series beneath the irrigated plot shows a broad increase relative to the control and shorter duration increases in direct response to the irrigation events. Heat modelling results are compared to field measurements.

  5. An Analysis of the Selected Materials Used in Step Measurements During Pre-Fits of Thermal Protection System Tiles and the Accuracy of Measurements Made Using These Selected Materials

    NASA Technical Reports Server (NTRS)

    Kranz, David William

    2010-01-01

    The goal of this research project was be to compare and contrast the selected materials used in step measurements during pre-fits of thermal protection system tiles and to compare and contrast the accuracy of measurements made using these selected materials. The reasoning for conducting this test was to obtain a clearer understanding to which of these materials may yield the highest accuracy rate of exacting measurements in comparison to the completed tile bond. These results in turn will be presented to United Space Alliance and Boeing North America for their own analysis and determination. Aerospace structures operate under extreme thermal environments. Hot external aerothermal environments in high Mach number flights lead to high structural temperatures. The differences between tile heights from one to another are very critical during these high Mach reentries. The Space Shuttle Thermal Protection System is a very delicate and highly calculated system. The thermal tiles on the ship are measured to within an accuracy of .001 of an inch. The accuracy of these tile measurements is critical to a successful reentry of an orbiter. This is why it is necessary to find the most accurate method for measuring the height of each tile in comparison to each of the other tiles. The test results indicated that there were indeed differences in the selected materials used in step measurements during prefits of Thermal Protection System Tiles and that Bees' Wax yielded a higher rate of accuracy when compared to the baseline test. In addition, testing for experience level in accuracy yielded no evidence of difference to be found. Lastly the use of the Trammel tool over the Shim Pack yielded variable difference for those tests.

  6. Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

    PubMed Central

    2011-01-01

    Background Single nucleotide polymorphisms (SNPs) are the most abundant source of genetic variation among individuals of a species. New genotyping technologies allow examining hundreds to thousands of SNPs in a single reaction for a wide range of applications such as genetic diversity analysis, linkage mapping, fine QTL mapping, association studies, marker-assisted or genome-wide selection. In this paper, we evaluated the potential of highly-multiplexed SNP genotyping for genetic mapping in maritime pine (Pinus pinaster Ait.), the main conifer used for commercial plantation in southwestern Europe. Results We designed a custom GoldenGate assay for 1,536 SNPs detected through the resequencing of gene fragments (707 in vitro SNPs/Indels) and from Sanger-derived Expressed Sequenced Tags assembled into a unigene set (829 in silico SNPs/Indels). Offspring from three-generation outbred (G2) and inbred (F2) pedigrees were genotyped. The success rate of the assay was 63.6% and 74.8% for in silico and in vitro SNPs, respectively. A genotyping error rate of 0.4% was further estimated from segregating data of SNPs belonging to the same gene. Overall, 394 SNPs were available for mapping. A total of 287 SNPs were integrated with previously mapped markers in the G2 parental maps, while 179 SNPs were localized on the map generated from the analysis of the F2 progeny. Based on 98 markers segregating in both pedigrees, we were able to generate a consensus map comprising 357 SNPs from 292 different loci. Finally, the analysis of sequence homology between mapped markers and their orthologs in a Pinus taeda linkage map, made it possible to align the 12 linkage groups of both species. Conclusions Our results show that the GoldenGate assay can be used successfully for high-throughput SNP genotyping in maritime pine, a conifer species that has a genome seven times the size of the human genome. This SNP-array will be extended thanks to recent sequencing effort using new generation

  7. The sROD module for the ATLAS Tile Calorimeter Phase-II Upgrade Demonstrator

    NASA Astrophysics Data System (ADS)

    Carrió, F.; Castillo, V.; Ferrer, A.; Fiorini, L.; Hernández, Y.; Higón, E.; Mellado, B.; March, L.; Moreno, P.; Reed, R.; Solans, C.; Valero, A.; Valls, J. A.

    2014-02-01

    TileCal is the central hadronic calorimeter of the ATLAS experiment at the Large Hadron Collider (LHC) at CERN. The main upgrade of the LHC to increase the instantaneous luminosity is scheduled for 2022. The High Luminosity LHC, also called upgrade Phase-II, will imply a complete redesign of the read-out electronics in TileCal. In the new read-out architecture, the front-end electronics aims to transmit full digitized information to the back-end system in the counting rooms. Thus, the back-end system will also provide digital calibrated information with enhanced precision and granularity to the first level trigger to improve the trigger efficiencies. The demonstrator project is envisaged to qualify this new proposed architecture. A reduced part of the detector, 1/256 of the total, will be equipped with the new electronics during 2014 to evaluate the proposed architecture in real conditions. The upgraded Read-Out Driver (sROD) will be the core element of the back-end electronics in Phase-II. The sROD module is designed on a double mid-size AMC format and will operate under an AdvancedTCA framework. The module includes two Xilinx Series 7 Field Programmable Gate Arrays (FPGAs) for data receiving and processing, as well as the implementation of embedded systems. Related to optical connectors, the sROD uses 4 QSFPs to receive and transmit data from the front-end electronics and 1 Avago MiniPOD to send preprocessed data to the first level trigger system. An SFP module maintains the compatibility with the existing hardware. A complete description of the sROD module for the demonstrator including the main functionalities, circuit design and the control software and firmware will be presented.

  8. Rapid hologram generation utilizing layer-based approach and graphic rendering for realistic three-dimensional image reconstruction by angular tiling

    NASA Astrophysics Data System (ADS)

    Chen, Jhen-Si; Chu, Daping; Smithwick, Quinn

    2014-03-01

    An approach of rapid hologram generation for the realistic three-dimensional (3-D) image reconstruction based on the angular tiling concept is proposed, using a new graphic rendering approach integrated with a previously developed layer-based method for hologram calculation. A 3-D object is simplified as layered cross-sectional images perpendicular to a chosen viewing direction, and our graphics rendering approach allows the incorporation of clear depth cues, occlusion, and shading in the generated holograms for angular tiling. The combination of these techniques together with parallel computing reduces the computation time of a single-view hologram for a 3-D image of extended graphics array resolution to 176 ms using a single consumer graphics processing unit card.

  9. A graph-theoretical approach to the selection of the minimum tiling path from a physical map.

    PubMed

    Bozdag, Serdar; Close, Timothy J; Lonardi, Stefano

    2013-01-01

    The problem of computing the minimum tiling path (MTP) from a set of clones arranged in a physical map is a cornerstone of hierarchical (clone-by-clone) genome sequencing projects. We formulate this problem in a graph theoretical framework, and then solve by a combination of minimum hitting set and minimum spanning tree algorithms. The tool implementing this strategy, called FMTP, shows improved performance compared to the widely used software FPC. When we execute FMTP and FPC on the same physical map, the MTP produced by FMTP covers a higher portion of the genome, and uses a smaller number of clones. For instance, on the rice genome the MTP produced by our tool would reduce by about 11 percent the cost of a clone-by-clone sequencing project. Source code, benchmark data sets, and documentation of FMTP are freely available at >http://code.google.com/p/fingerprint-based-minimal-tiling-path/ under MIT license. PMID:23929859

  10. Large-scale testing of structural clay tile infilled frames

    SciTech Connect

    Flanagan, R.D.; Bennett, R.M.

    1993-03-18

    A summary of large-scale cyclic static tests of structural clay tile infilled frames is given. In-plane racking tests examined the effects of varying frame stiffness, varying infill size, infill offset from frame centerline, and single and double wythe infill construction. Out-of-plane tests examined infilled frame response to inertial loadings and inter-story drift loadings. Sequential in-plane and out-of-plane loadings were performed to determine the effects of orthogonal damage and degradation on both strength and stiffness. A combined out-of-plane inertial and in-plane racking test was conducted to investigate the interaction of multi-directional loading. To determine constitutive properties of the infills, prism compression, mortar compression and various unit tile tests were performed.

  11. Inspection of magnetic tile internal cracks based on impact acoustics

    NASA Astrophysics Data System (ADS)

    Xie, Luofeng; Huang, Qinyuan; Zhao, Yue; Yin, Guofu

    2015-04-01

    An automatic system is developed for internal cracks detection in magnetic tiles based on the impact acoustics, using wavelet packet transform (WPT), principal component analysis (PCA) and hidden Markov model (HMM). In this system, the detecting device is considered as core part to collect and analyse the impact sounds. The original impact sounds are first decomposed up to six levels based on WPT to extract the features. PCA is then performed for dimension reduction and clustering analysis. By adopting the features extracted based on WPT and optimised by PCA as inputs, an HHM classifier is developed for automatic inspection. The results of classification show that the accuracy rate is 100%, demonstrating that the system has significant potential in detecting magnetic tile internal cracks.

  12. Simulation and validation of the ATLAS Tile Calorimeter response

    NASA Astrophysics Data System (ADS)

    Karpov, S. N.

    2014-09-01

    The Tile Calorimeter is the central section of the ATLAS hadronic calorimeter at the Large Hadron Collider. Scintillation light produced in the tiles is transmitted by wavelength shifting fibers to photomultiplier tubes (PMTs). The resulting electronic signals from approximately 10000 PMTs are amplified, shaped and digitized before being transferred to off-detector data acquisition systems. This paper describes the detailed simulation of this large scale calorimeter from the implementation of the geometrical elements down to the realistic description of the electronics readout pulses, the special noise treatment and the signal reconstruction. Recently improved description of the optical and electronic signal propagation is highlighted and the validation with the real particle data is presented.

  13. An integrated approach for assessing the bioreceptivity of glazed tiles to phototrophic microorganisms.

    PubMed

    Coutinho, M L; Miller, A Z; Rogerio-Candelera, M A; Mirão, J; Cerqueira Alves, L; Veiga, J P; Águas, H; Pereira, S; Lyubchyk, A; Macedo, M F

    2016-01-01

    A laboratory-based methodology was designed to assess the bioreceptivity of glazed tiles. The experimental set-up consisted of multiple steps: manufacturing of pristine and artificially aged glazed tiles, enrichment of phototrophic microorganisms, inoculation of phototrophs on glazed tiles, incubation under optimal conditions and quantification of biomass. In addition, tile intrinsic properties were assessed to determine which material properties contributed to tile bioreceptivity. Biofilm growth and biomass were appraised by digital image analysis, colorimetry and chlorophyll a analysis. SEM, micro-Raman and micro-particle induced X-ray emission analyses were carried out to investigate the biodeteriorating potential of phototrophic microorganisms on the glazed tiles. This practical and multidisciplinary approach showed that the accelerated colonization conditions allowed different types of tile bioreceptivity to be distinguished and to be related to precise characteristics of the material. Aged tiles showed higher bioreceptivity than pristine tiles due to their higher capillarity and permeability. Moreover, biophysical deterioration caused by chasmoendolithic growth was observed on colonized tile surfaces. PMID:26900634

  14. Dual Poisson-Disk Tiling: an efficient method for distributing features on arbitrary surfaces.

    PubMed

    Li, Hongwei; Lo, Kui-Yip; Leung, Man-Kang; Fu, Chi-Wing

    2008-01-01

    This paper introduces a novel surface-modeling method to stochastically distribute features on arbitrary topological surfaces. The generated distribution of features follows the Poisson disk distribution, so we can have a minimum separation guarantee between features and avoid feature overlap. With the proposed method, we not only can interactively adjust and edit features with the help of the proposed Poisson disk map, but can also efficiently re-distribute features on object surfaces. The underlying mechanism is our dual tiling scheme, known as the Dual Poisson-Disk Tiling. First, we compute the dual of a given surface parameterization, and tile the dual surface by our specially-designed dual tiles; during the pre-processing, the Poisson disk distribution has been pre-generated on these tiles. By dual tiling, we can nicely avoid the problem of corner heterogeneity when tiling arbitrary parameterized surfaces, and can also reduce the tile set complexity. Furthermore, the dual tiling scheme is non-periodic, and we can also maintain a manageable tile set. To demonstrate the applicability of this technique, we explore a number of surface-modeling applications: pattern and shape distribution, bump-mapping, illustrative rendering, mold simulation, the modeling of separable features in texture and BTF, and the distribution of geometric textures in shell space. PMID:18599912

  15. DNA triangles and self-assembled hexagonal tilings.

    PubMed

    Chelyapov, Nickolas; Brun, Yuriy; Gopalkrishnan, Manoj; Reishus, Dustin; Shaw, Bilal; Adleman, Leonard

    2004-11-01

    We have designed and constructed DNA complexes in the form of triangles. We have created hexagonal planar tilings from these triangles via self-assembly. Unlike previously reported structures self-assembled from DNA, our structures appear to involve bending of double helices. Bending helices may be a useful design option in the creation of self-assembled DNA structures. It has been suggested that DNA self-assembly may lead to novel materials and efficient computational devices. PMID:15506744

  16. A hollow clay tile wall seismic performance program overview

    SciTech Connect

    Beavers, J.E.; Jones, W.D.; Stoddart, W.C.T.

    1992-02-25

    An overview of a multiyear hollow clay tile wall (HCTW) program being conducted by Martin Marietta Energy Systems, Inc., at the Oak Ridge Y-12 Plant, for the US Department of Energy is presented. The purpose of the HCTW program is to determine the load capacity of unreinforced infilled HCTW buildings when subjected to earthquakes. Progress to date tends to indicate that extensive retrofit of such structures may not be warranted in low-to-moderate seismic zones.

  17. The geometry of the 37-tile microwave antenna support structure

    NASA Technical Reports Server (NTRS)

    Finley, L. A.

    1980-01-01

    The geometry of the support structure for a proposed parabolic shaped microwave antenna is examined. The surface of the antenna is comprised of 37 hexagonal shaped tiles, each connected to a truss module. The units are joined together to form a rigidized, faceted, concave parabolic surface. The geometry specifications are described through an explanation of the structural components which make up the antenna, a description of the coordinate system devised to identify the structure, and a presentation of the nondimensional results.

  18. Response and Uniformity Studies of Directly Coupled Tiles

    SciTech Connect

    Zutshi, Vishnu

    2010-04-02

    A finely-segmented scintillator-based calorimeter which capitalizes on the marriage of proven detection techniques with novel solid-state photo-detector devices such as Multi-pixel Photon Counters (MPPCs) is an interesting calorimetric system from the point of view of future detector design. A calorimeter system consisting of millions of channels will require a high degree of integration. The first steps towards this integration have already been facilitated by the small size and magnetic field immunity of the MPPCs. The photo-conversion occurs right at the tile, thus obviating the need for routing of long clear fibers. Similar considerations apply to the presence of wave-length shifting (WLS) fibers inside the tiles which couple it to the photo-detectors. Significant simplification in construction and assembly ensue if the MPPCs can be coupled directly to the scintillator tiles. Equally importantly, the total absence of fibers would offer greater flexibility in the choice of the transverse segmentation while enhancing the electro-mechanical integrability of the design. The NIU high-energy physics group has been studying the fiberless or direct-coupling option for some time now. Encouraging results on response and response uniformity have been obtained using radioactive sources. This MOU seeks to set up a framework to extend these tests using beams at the MTBF. The results will be relevant to high granularity scintillator/crystal electromagnetic and hadronic calorimetry. The tests involve a set of small directly-coupled tile counters fabricated at NIU which will be placed in the beam to study their response and response uniformity as a function of the incident position of the particles passing through them.

  19. Array tomography: immunostaining and antibody elution.

    PubMed

    Micheva, Kristina D; O'Rourke, Nancy; Busse, Brad; Smith, Stephen J

    2010-11-01

    Array tomography is a volumetric microscopy method based on physical serial sectioning. Ultrathin sections of a plastic-embedded tissue are cut using an ultramicrotome, bonded in an ordered array to a glass coverslip, stained as desired, and imaged. The resulting two-dimensional image tiles can then be reconstructed computationally into three-dimensional volume images for visualization and quantitative analysis. The minimal thickness of individual sections permits high-quality rapid staining and imaging, whereas the array format allows reliable and convenient section handling, staining, and automated imaging. Also, the physical stability of the arrays permits images to be acquired and registered from repeated cycles of staining, imaging, and stain elution, as well as from imaging using multiple modalities (e.g., fluorescence and electron microscopy). Array tomography makes it possible to visualize and quantify previously inaccessible features of tissue structure and molecular architecture. However, careful preparation of the tissue is essential for successful array tomography; these steps can be time-consuming and require some practice to perfect. In this protocol, tissue arrays are prepared for imaging by tagging with primary antibodies against specific cellular targets, followed by labeling with fluorescent secondary antibodies. Alternatively, fluorescent proteins that have been introduced into the tissue before dissection can be used. PMID:21041398

  20. Array tomography: rodent brain fixation and embedding.

    PubMed

    Micheva, Kristina D; O'Rourke, Nancy; Busse, Brad; Smith, Stephen J

    2010-11-01

    Array tomography is a volumetric microscopy method based on physical serial sectioning. Ultrathin sections of a plastic-embedded tissue are cut using an ultramicrotome, bonded in an ordered array to a glass coverslip, stained as desired, and imaged. The resulting two-dimensional image tiles can then be reconstructed computationally into three-dimensional volume images for visualization and quantitative analysis. The minimal thickness of individual sections permits high-quality rapid staining and imaging, whereas the array format allows reliable and convenient section handling, staining, and automated imaging. Also, the physical stability of the arrays permits images to be acquired and registered from repeated cycles of staining, imaging, and stain elution, as well as from imaging using multiple modalities (e.g., fluorescence and electron microscopy). Array tomography makes it possible to visualize and quantify previously inaccessible features of tissue structure and molecular architecture. However, careful preparation of the tissue is essential for successful array tomography; these steps can be time-consuming and require some practice to perfect. This protocol describes the fixation and processing required to prepare tissues for immunofluorescence array tomography. PMID:21041396

  1. Multibeam Phased Array Antennas

    NASA Technical Reports Server (NTRS)

    Popovic, Zoya; Romisch, Stefania; Rondineau, Sebastien

    2004-01-01

    In this study, a new architecture for Ka-band multi-beam arrays was developed and demonstrated experimentally. The goal of the investigation was to demonstrate a new architecture that has the potential of reducing the cost as compared to standard expensive phased array technology. The goals of this specific part of the project, as stated in the yearly statement of work in the original proposal are: 1. Investigate bounds on performance of multi-beam lens arrays in terms of beamwidths, volume (size), isolation between beams, number of simultaneous beams, etc. 2. Design a small-scale array to demonstrate the principle. The array will be designed for operation around 3OGHz (Ka-band), with two 10-degree beamwidth beams. 3. Investigate most appropriate way to accomplish fine-tuning of the beam pointing within 5 degrees around the main beam pointing angle.

  2. Orion EFT-1 Catalytic Tile Experiment Overview and Flight Measurements

    NASA Technical Reports Server (NTRS)

    Salazar, Giovanni; Amar, Adam; Hyatt, Andrew; Rezin, Marc D.

    2016-01-01

    This paper describes the design and results of a surface catalysis flight experiment flown on the Orion Multipurpose Crew Vehicle during Exploration Flight Test 1 (EFT1). Similar to previous Space Shuttle catalytic tile experiments, the present test consisted of a highly catalytic coating applied to an instrumented TPS tile. However, the present catalytic tile experiment contained significantly more instrumentation in order to better resolve the heating overshoot caused by the change in surface catalytic efficiency at the interface between two distinct materials. In addition to collecting data with unprecedented spatial resolution of the "overshoot" phenomenon, the experiment was also designed to prove if such a catalytic overshoot would be seen in turbulent flow in high enthalpy regimes. A detailed discussion of the results obtained during EFT1 is presented, as well as the challenges associated with data interpretation of this experiment. Results of material testing carried out in support of this flight experiment are also shown. Finally, an inverse heat conduction technique is employed to reconstruct the flight environments at locations upstream and along the catalytic coating. The data and analysis presented in this work will greatly contribute to our understanding of the catalytic "overshoot" phenomenon, and have a significant impact on the design of future spacecraft.

  3. Buffing, burnishing, and stripping of vinyl asbestos floor tile

    SciTech Connect

    Hollett, B.A.; Edwards, A.; Clark, P.J.

    1995-10-01

    Studies were conducted to evaluate airborne asbestos concentrations during the three principal types of preventative maintenance (low-speed spray-buffing, ultra high-speed burnishing, and wet-stripping) used on asbestos-containing floor tiles. These were done under pre-existing and prepared levels of floor care maintenance. Airborne asbestos concentrations were measured before and during each floor care procedure to determine the magnitude of the increase in airborne asbestos levels during each procedure. Airborne total fiber concentrations were also measured for comparison with the Occupational Safety and Health Administration`s (OSHA) Permissible Exposure Limit (PEL) of 0.1 f/cm{sup 3}. Low-speed spray-buffing and wet-stripping were evaluated on pre-existing floor conditions and three levels of prepared floor care conditions (poor, medium, and good). Ultra high-speed burnishing and wet-stripping were evaluated on two levels of prepared floor care conditions (poor and good). Floor care conditions were defined in consultation with the Chemical Specialty Manufacturers Association and other representatives of floor-care chemical manufacturers. Controlled studies were conducted in an unoccupied building at the decommissioned Chanute Air Force Base in Rantoul, Illinois, with the cooperation of the U.S. Air Force. The building offered approximately 8600 ft{sup 2} of open floor space tiled with 9-inch by 9-inch resilient floor tile containing approximately 5% chrysotile asbestos.

  4. JuxtaView - A tool for interactive visualization of large imagery on scalable tiled displays

    USGS Publications Warehouse

    Krishnaprasad, N.K.; Vishwanath, V.; Venkataraman, S.; Rao, A.G.; Renambot, L.; Leigh, J.; Johnson, A.E.; Davis, B.

    2004-01-01

    JuxtaView is a cluster-based application for viewing ultra-high-resolution images on scalable tiled displays. We present in JuxtaView, a new parallel computing and distributed memory approach for out-of-core montage visualization, using LambdaRAM, a software-based network-level cache system. The ultimate goal of JuxtaView is to enable a user to interactively roam through potentially terabytes of distributed, spatially referenced image data such as those from electron microscopes, satellites and aerial photographs. In working towards this goal, we describe our first prototype implemented over a local area network, where the image is distributed using LambdaRAM, on the memory of all nodes of a PC cluster driving a tiled display wall. Aggressive pre-fetching schemes employed by LambdaRAM help to reduce latency involved in remote memory access. We compare LambdaRAM with a more traditional memory-mapped file approach for out-of-core visualization. ?? 2004 IEEE.

  5. Orbital Debris Shape and Orientation Effects on Impact Damage to Shuttle Tiles

    NASA Technical Reports Server (NTRS)

    Evans, Steven W.; Williamsen, Joel

    2006-01-01

    Taking the damage results from a previous paper as a guide, and using a tile model created for the STS-107 accident investigation, we used the SPHC hydrodynamic code to evaluate the probable worst-case impact effects of flat, rectangular, "flake-shaped," orbital debris particles on Space Shuttle thermal tiles. We compared the damage from flakes with that produced by spheres. The flakes and spheres were sized according to a "characteristic length" (Lc) derived from radar cross-section measurements, and embodied in the NASA Standard Breakup Model (SBM). Impacts were simulated at near-normal obliquity, at 12 km/sec. We modeled the worst-case flake orientation: a corner-on impact, an orientation we term a "Face A-B" impact. Results of our simulations indicate that flake impactors are less damaging than spheres of the same Lc. Since spherical impactors have been assumed in analyses of shuttle orbital debris impact risk, we find that these risks may have been overestimated. This work represents a preliminary second step, i.e., a follow-on to [1], in developing a sensitivity analysis for the expected range of effects on damage considering spherical vs. non-spherical impactors, as recommended by the Institute for Defense Analyses (IDA) report to the Columbia Accident Investigation Board.

  6. Surface defect detection in tiling Industries using digital image processing methods: analysis and evaluation.

    PubMed

    Karimi, Mohammad H; Asemani, Davud

    2014-05-01

    Ceramic and tile industries should indispensably include a grading stage to quantify the quality of products. Actually, human control systems are often used for grading purposes. An automatic grading system is essential to enhance the quality control and marketing of the products. Since there generally exist six different types of defects originating from various stages of tile manufacturing lines with distinct textures and morphologies, many image processing techniques have been proposed for defect detection. In this paper, a survey has been made on the pattern recognition and image processing algorithms which have been used to detect surface defects. Each method appears to be limited for detecting some subgroup of defects. The detection techniques may be divided into three main groups: statistical pattern recognition, feature vector extraction and texture/image classification. The methods such as wavelet transform, filtering, morphology and contourlet transform are more effective for pre-processing tasks. Others including statistical methods, neural networks and model-based algorithms can be applied to extract the surface defects. Although, statistical methods are often appropriate for identification of large defects such as Spots, but techniques such as wavelet processing provide an acceptable response for detection of small defects such as Pinhole. A thorough survey is made in this paper on the existing algorithms in each subgroup. Also, the evaluation parameters are discussed including supervised and unsupervised parameters. Using various performance parameters, different defect detection algorithms are compared and evaluated. PMID:24502941

  7. Modelling runoff on ceramic tile roofs using the kinematic wave equations

    NASA Astrophysics Data System (ADS)

    Silveira, Alexandre; Abrantes, João; de Lima, João; Lira, Lincoln

    2016-04-01

    Rainwater harvesting is a water saving alternative strategy that presents many advantages and can provide solutions to address major water resources problems, such as fresh water scarcity, urban stream degradation and flooding. In recent years, these problems have become global challenges, due to climatic change, population growth and increasing urbanisation. Generally, roofs are the first to come into contact with rainwater; thus, they are the best candidates for rainwater harvesting. In this context, the correct evaluation of roof runoff quantity and quality is essential to effectively design rainwater harvesting systems. Despite this, many studies usually focus on the qualitative aspects in detriment of the quantitative aspects. Laboratory studies using rainfall simulators have been widely used to investigate rainfall-runoff processes. These studies enabled a detailed exploration and systematic replication of a large range of hydrologic conditions, such as rainfall spatial and temporal characteristics, providing for a fast way to obtain precise and consistent data that can be used to calibrate and validate numerical models. This study aims to evaluate the performance of a kinematic wave based numerical model in simulating runoff on sloping roofs, by comparing the numerical results with the ones obtained from laboratory rainfall simulations on a real-scale ceramic tile roof (Lusa tiles). For all studied slopes, simulated discharge hydrographs had a good adjust to observed ones. Coefficient of determination and Nash-Sutcliffe efficiency values were close to 1.0. Particularly, peak discharges, times to peak and peak durations were very well simulated.

  8. Self-assembly of Complex Two-dimensional Shapes from Single-stranded DNA Tiles

    PubMed Central

    Wei, Bryan; Vhudzijena, Michelle K.; Robaszewski, Joanna; Yin, Peng

    2015-01-01

    Current methods in DNA nano-architecture have successfully engineered a variety of 2D and 3D structures using principles of self-assembly. In this article, we describe detailed protocols on how to fabricate sophisticated 2D shapes through the self-assembly of uniquely addressable single-stranded DNA tiles which act as molecular pixels on a molecular canvas. Each single-stranded tile (SST) is a 42-nucleotide DNA strand composed of four concatenated modular domains which bind to four neighbors during self-assembly. The molecular canvas is a rectangle structure self-assembled from SSTs. A prescribed complex 2D shape is formed by selecting the constituent molecular pixels (SSTs) from a 310-pixel molecular canvas and then subjecting the corresponding strands to one-pot annealing. Due to the modular nature of the SST approach we demonstrate the scalability, versatility and robustness of this method. Compared with alternative methods, the SST method enables a wider selection of information polymers and sequences through the use of de novo designed and synthesized short DNA strands. PMID:25993048

  9. Leaching of the Neonicotinoids Thiamethoxam and Imidacloprid from Sugar Beet Seed Dressings to Subsurface Tile Drains.

    PubMed

    Wettstein, Felix E; Kasteel, Roy; Garcia Delgado, Maria F; Hanke, Irene; Huntscha, Sebastian; Balmer, Marianne E; Poiger, Thomas; Bucheli, Thomas D

    2016-08-24

    Pesticide transport from seed dressings toward subsurface tile drains is still poorly understood. We monitored the neonicotinoid insecticides imidacloprid and thiamethoxam from sugar beet seed dressings in flow-proportional drainage water samples, together with spray applications of bromide and the herbicide S-metolachlor in spring and the fungicides epoxiconazole and kresoxim-methyl in summer. Event-driven, high first concentration maxima up to 2830 and 1290 ng/L for thiamethoxam and imidacloprid, respectively, were followed by an extended period of tailing and suggested preferential flow. Nevertheless, mass recoveries declined in agreement with the degradation and sorption properties collated in the groundwater ubiquity score, following the order bromide (4.9%), thiamethoxam (1.2%), imidacloprid (0.48%), kresoxim-methyl acid (0.17%), S-metolachlor (0.032%), epoxiconazole (0.013%), and kresoxim-methyl (0.003%), and indicated increased leaching from seed dressings compared to spray applications. Measured concentrations and mass recoveries indicate that subsurface tile drains contribute to surface water contamination with neonicotinoids from seed dressings. PMID:27529118

  10. Comprehensive whole genome array CGH profiling of mantle cell lymphoma model genomes.

    PubMed

    de Leeuw, Ronald J; Davies, Jonathan J; Rosenwald, Andreas; Bebb, Gwyn; Gascoyne, Randy D; Dyer, Martin J S; Staudt, Louis M; Martinez-Climent, Jose A; Lam, Wan L

    2004-09-01

    Mantle cell lymphoma (MCL) is an aggressive non-Hodgkin's lymphoma with median patient survival times of approximately 3 years. Although the characteristic t(11;14)(q13;q32) is found in virtually all cases, experimental evidence suggests that this event alone is insufficient to result in lymphoma and secondary genomic alterations are required. Using a newly developed DNA microarray of 32 433 overlapping genomic segments spanning the entire human genome, we can for the first time move beyond marker based analysis and comprehensively search for secondary genomic alterations concomitant with the t(11;14) in eight commonly used cell models of MCL (Granta-519, HBL-2, NCEB-1, Rec-1, SP49, UPN-1, Z138C and JVM-2). Examining these genomes at tiling resolution identified an unexpected average of 35 genetic alterations per cell line, with equal numbers of amplifications and deletions. Recurrent high-level amplifications were identified at 18q21 containing BCL2, and at 13q31 containing GPC5. In addition, a recurrent homozygous deletion was identified at 9p21 containing p15 and p16. Alignment of these profiles revealed 14 recurrent losses and 21 recurrent gains as small as 130 kb. Remarkably, even the intra immunoglobulin gene deletions at 2p11 and 22q11 were detected, demonstrating the power of combining the detection sensitivity of array comparative genomic hybridization (CGH) with the resolution of an overlapping whole genome tiling-set. These alterations not only coincided with previously described aberrations in MCL, but also defined 13 novel regions. Further characterization of such minimally altered genomic regions identified using whole genome array CGH will define novel dominant oncogenes and tumor suppressor genes that play important roles in the pathogenesis of MCL. PMID:15229187

  11. Coverage percentage and raman measurement of cross-tile and scaffold cross-tile based DNA nanostructures.

    PubMed

    Gnapareddy, Bramaramba; Ahn, Sang Jung; Dugasani, Sreekantha Reddy; Kim, Jang Ah; Amin, Rashid; Mitta, Sekhar Babu; Vellampatti, Srivithya; Kim, Byeonghoon; Kulkarni, Atul; Kim, Taesung; Yun, Kyusik; LaBean, Thomas H; Park, Sung Ha

    2015-11-01

    We present two free-solution annealed DNA nanostructures consisting of either cross-tile CT1 or CT2. The proposed nanostructures exhibit two distinct structural morphologies, with one-dimensional (1D) nanotubes for CT1 and 2D nanolattices for CT2. When we perform mica-assisted growth annealing with CT1, a dramatic dimensional change occurs where the 1D nanotubes transform into 2D nanolattices due to the presence of the substrate. We assessed the coverage percentage of the 2D nanolattices grown on the mica substrate with CT1 and CT2 as a function of the concentration of the DNA monomer. Furthermore, we fabricated a scaffold cross-tile (SCT), which is a new design of a modified cross-tile that consists of four four-arm junctions with a square aspect ratio. For SCT, eight oligonucleotides are designed in such a way that adjacent strands with sticky ends can produce continuous arms in both the horizontal and vertical directions. The SCT was fabricated via free-solution annealing, and self-assembled SCT produces 2D nanolattices with periodic square cavities. All structures were observed via atomic force microscopy. Finally, we fabricated divalent nickel ion (Ni(2+))- and trivalent dysprosium ion (Dy(3+))-modified 2D nanolattices constructed with CT2 on a quartz substrate, and the ion coordinations were examined via Raman spectroscopy. PMID:26340356

  12. Atomic Force Microscopy of Arrays of Asymmetrical DNA Motifs

    SciTech Connect

    Sherman, W.B.; Mudalige, T.K.

    2012-03-21

    DNA can easily be assembled into wide and relatively flat nanostructures that lend themselves to study via Atomic Force Microscopy (AFM). It is often important to know which side of an assembly the AFM is imaging. This is particularly crucial for characterizing nanomachines, where the movement must be measured relative to fiducial features visible to the AFM. We have developed a cheap and simple technique for building DNA arrays with distinguishable sides, a technique requiring 10 or fewer strands - dozens or hundreds of strands fewer than used for these purposes previously. Our approach involves constructing arrays out of DNA tiles that have low apparent symmetry when imaged via AFM. We have surveyed the effects of varying degrees of motif asymmetry in AFM micrographs. Even at resolutions where the individual tiles cannot be resolved (either because of sub-optimal tip quality, or very gentle tapping by the AFM tip) the larger scale features of the arrays have predictable structures that allow the determination of which side of the array is facing up. We have used this information to verify that DNA hairpins attached to either the up- or down-facing side of an array on mica can be detected in AFM height scans. We have also characterized differences in appearance between hairpins attached to different sides of the arrays.

  13. Filler bar heating due to stepped tiles in the shuttle orbiter thermal protection system

    NASA Technical Reports Server (NTRS)

    Petley, D. H.; Smith, D. M.; Edwards, C. L. W.; Patten, A. B.; Hamilton, H. H., II

    1983-01-01

    An analytical study was performed to investigate the excessive heating in the tile to tile gaps of the Shuttle Orbiter Thermal Protection System due to stepped tiles. The excessive heating was evidence by visible discoloration and charring of the filler bar and strain isolation pad that is used in the attachment of tiles to the aluminum substrate. Two tile locations on the Shuttle orbiter were considered, one on the lower surface of the fuselage and one on the lower surface of the wing. The gap heating analysis involved the calculation of external and internal gas pressures and temperatures, internal mass flow rates, and the transient thermal response of the thermal protection system. The results of the analysis are presented for the fuselage and wing location for several step heights. The results of a study to determine the effectiveness of a half height ceramic fiber gap filler in preventing hot gas flow in the tile gaps are also presented.

  14. Generalized Penrose tiling as a quasilattice for decagonal quasicrystal structure analysis.

    PubMed

    Chodyn, Maciej; Kuczera, Pawel; Wolny, Janusz

    2015-03-01

    The generalized Penrose tiling is, in fact, an infinite set of decagonal tilings. It is constructed with the same rhombs (thick and thin) as the conventional Penrose tiling, but its long-range order depends on the so-called shift parameter (s ∈ 〈0; 1)). The structure factor is derived for the arbitrarily decorated generalized Penrose tiling within the average unit cell approach. The final formula works in physical space only and is directly dependent on the s parameter. It allows one to straightforwardly change the long-range order of the refined structure just by changing the s parameter and keeping the tile decoration unchanged. This gives a great advantage over the higher-dimensional method, where every change of the tiling (change in the s parameter) requires the structure model to be built from scratch, i.e. the fine division of the atomic surfaces has to be redone. PMID:25727864

  15. CAD Tools for Creating Space-filing 3D Escher Tiles

    SciTech Connect

    Howison, Mark; Sequin, Carlo H.

    2009-04-10

    We discuss the design and implementation of CAD tools for creating decorative solids that tile 3-space in a regular, isohedral manner. Starting with the simplest case of extruded 2D tilings, we describe geometric algorithms used for maintaining boundary representations of 3D tiles, including a Java implementation of an interactive constrained Delaunay triangulation library and a mesh-cutting algorithm used in layering extruded tiles to create more intricate designs. Finally, we demonstrate a CAD tool for creating 3D tilings that are derived from cubic lattices. The design process for these 3D tiles is more constrained, and hence more difficult, than in the 2D case, and it raises additional user interface issues.

  16. Inferring the interconnections between surface water bodies, tile-drains and an unconfined aquifer-aquitard system: A case study

    NASA Astrophysics Data System (ADS)

    Colombani, N.; Di Giuseppe, D.; Faccini, B.; Ferretti, G.; Mastrocicco, M.; Coltorti, M.

    2016-06-01

    Shallow lenses in reclaimed coastal areas are precious sources of freshwater for crop development, but their seasonal behaviour is seldom known in tile-drained fields. In this study, field monitoring and numerical modelling provide a robust conceptual model of these complex environments. Crop and meteorological data are used to implement an unsaturated flow model to reconstruct daily recharge. Groundwater fluxes and salinity, water table elevation, tile-drains' discharge and salinity are used to calibrate a 2D density-dependent numerical model to quantify non-reactive solute transport within the aquifer-aquitard system. Results suggest that lateral fluxes in low hydraulic conductivity sediments are limited, while water table fluctuation is significant. The use of depth-integrated monitoring to calibrate the model results in poor efficiency, while multi-level soil profiles are crucial to define the mixing zone between fresh and brackish groundwater. Measured fluxes and chloride concentrations from tile-drains not fully compare with calculated ones due to preferential flow through cracks.

  17. Effects of tillage and poultry manure application rates on Salmonella and fecal indicator bacteria concentrations in tiles draining Des Moines Lobe soils.

    PubMed

    Hruby, C E; Soupir, M L; Moorman, T B; Shelley, M; Kanwar, R S

    2016-04-15

    Application of poultry manure (PM) to cropland as fertilizer is a common practice in artificially drained regions of the Upper Midwest United States. Tile-waters have the potential to contribute pathogenic bacteria to downstream waters. This 3-year study (2010-2012) was designed to evaluate the impacts of manure management and tillage practices on bacteria losses to drainage tiles under a wide range of field conditions. PM was applied annually in spring, prior to planting corn, at application rates ranging from 5 to 40 kg/ha to achieve target rates of 112 and 224 kg/ha nitrogen (PM1 and PM2). Control plots received no manure (PM0). Each treatment was replicated on three chisel-plowed (CP) plots and one no-till (NT) plot. Tile-water grab samples were collected weekly when tiles were flowing beginning 30 days before manure application to 100 days post application, and additional grab samples were obtained to target the full spectrum of flow conditions. Manure and tile-water samples were analyzed for the pathogen, Salmonella spp. (SALM), and fecal indicator bacteria (FIB), Escherichia coli (EC), and enterococci (ENT). All three bacterial genera were detected more frequently, and at significantly higher concentrations, in tile-waters draining NT plots compared to CP plots. Transport of bacteria to NT tiles was most likely facilitated by macropores, which were significantly more numerous above tiles in NT plots in 2012 as determined by smoke-testing. While post-manure samples contained higher concentrations of bacteria than pre-manure samples, significant differences were not seen between low (PM1) and high (PM2) rates of PM application. The highest concentrations were observed under the NT PM2 plot in 2010 (6.6 × 10(3) cfu/100 mL EC, 6.6 × 10(5) cfu/100 mL ENT, and 2.8 × 10(3) cfu/100 mL SALM). Individual and 30-day geometric mean ENT concentrations correlated more strongly to SALM than EC; however, SALM were present in samples with little or no FIB

  18. Numerical investigation of the spatial scale and time dependency of tile drainage contribution to stream flow

    NASA Astrophysics Data System (ADS)

    Thomas, Nicholas W.; Arenas, Antonio A.; Schilling, Keith E.; Weber, Larry J.

    2016-07-01

    Tile drainage systems are pervasive in the Central U.S., significantly altering the hydrologic system. The purpose of this study was to assess the effects of tile drainage systems on streamflow. A physically based coupled hydrologic model was applied to a 45 km2 agricultural Iowa watershed. Tile drainage was incorporated though an equivalent porous medium approach, calibrated though numerical experimentation. Experimental results indicated that a significant increase in hydraulic conductivity of the equivalent medium layer was needed to achieve agreement in total outflow with an explicit numerical representation of a tiled system. Watershed scale analysis derived the tile drainage contribution to stream flow (QT/Q) from a numerical tracer driven analysis of instream surface water. During precipitation events tile drainage represented 30% of stream flow, whereas during intervals between precipitations events, 61% of stream flow originated from the tile system. A division of event and non-event periods produced strong correlations between QT/Q and drainage area, positive for events, and negative for non-events. The addition of precipitation into the system acted to saturate near surface soils, increase lateral soil water movement, and dilute the relatively stable instream tile flow. Increased intensity precipitation translated the QT/Q relationship downward in a consistent manner. In non-event durations, flat upland areas contributed large contributions of tile flow, diluted by larger groundwater (non-tile) contribution to stream flow in the downstream steeper portion of the watershed. Study results provide new insights on the spatiotemporal response of tile drainage to precipitation and contributions of tile drainage to streamflow at a watershed scale, with results having important implications for nitrate transport.

  19. Thermal Structure Analysis of SIRCA Tile for X-34 Wing Leading Edge TPS

    NASA Technical Reports Server (NTRS)

    Milos, Frank S.; Squire, Thomas H.; Rasky, Daniel J. (Technical Monitor)

    1997-01-01

    This paper will describe in detail thermal/structural analyses of SIRCA tiles which were performed at NASA Ames under the The Tile Analysis Task of the X-34 Program. The analyses used the COSMOS/M finite element software to simulate the material response in arc-jet tests, mechanical deflection tests, and the performance of candidate designs for the TPS system. Purposes of the analysis were to verify thermal and structural models for the SIRCA tiles, to establish failure criteria for stressed tiles, to simulate the TPS response under flight aerothermal and mechanical load, and to confirm that adequate safety margins exist for the actual TPS design.

  20. Tethers as Debris: Simulating Impacts of Tether Fragments on Shuttle Tiles

    NASA Technical Reports Server (NTRS)

    Evans, Steven W.

    2004-01-01

    The SPHC hydrodynamic code was used to simulate impacts of Kevlar and aluminum projectiles on a model of the LI-900 type insulating tiles used on Space Shuffle Orbiters The intent was to examine likely damage that such tiles might experience if impacted by orbital debris consisting of tether fragments. Projectile speeds ranged from 300 meters per second to 10 kilometers per second. Damage is characterized by penetration depth, tile surface-hole diameter, tile body-cavity diameter, coating fracture diameter, tether and cavity wall material phases, and deformation of the aluminum backwall.

  1. High Resolution Modeling of Tile-Drained Controls on Ecohydrologic Dynamics in Intensively Managed Landscapes.

    NASA Astrophysics Data System (ADS)

    Wagner, D.; Le, P. V.; Kumar, P.; Woo, D.

    2015-12-01

    Tile drains are widely used in the Midwestern United States to improve the productivity of poorly drained agricultural fields. Since tile drain reduces vadose zone soil moisture by lowering the water table, and its outlets feed directly into streams and ditches, tile flow can affect various hydrologic, biotic and biogeochemical processes in the watershed. However, the effects of tile flow on ecohydrologic and nutrient dynamics at scales dominated by microtopographic variability, such as depression and roadside ditches, remain poorly understood. Here we present an explicit model of tile flow and incorporate into the integrated ecohydrologic-flow model, MLCan-GCSFlow, to investigate the impacts of tile drain on ecohydrologic and nutrient dynamics in intensively managed agricultural fields at lidar-resolution scales. Explicit coupling between subsurface and tile flow is obtained by modifications of variably saturated Richards equation to capture the impacts of tile drain on soil moisture. The coupling between subsurface and overland flow is obtained by prescribing a boundary condition switching approach at the top surface of the computational domain. Model results for study sites in Critical Zone Observatory for Intensively Managed Landscapes (IMLCZO) show the significance of tile drain flow on the vertical and spatial soil moisture distribution and coupled surface - sub-surface flow dynamics.

  2. Hypothetical Reentry Thermostructural Performance of Space Shuttle Orbiter With Missing or Eroded Thermal Protection Tiles

    NASA Technical Reports Server (NTRS)

    Ko, William L.; Gong, Leslie; Quinn, Robert D.

    2004-01-01

    This report deals with hypothetical reentry thermostructural performance of the Space Shuttle orbiter with missing or eroded thermal protection system (TPS) tiles. The original STS-5 heating (normal transition at 1100 sec) and the modified STS-5 heating (premature transition at 800 sec) were used as reentry heat inputs. The TPS missing or eroded site is assumed to be located at the center or corner (spar-rib juncture) of the lower surface of wing midspan bay 3. For cases of missing TPS tiles, under the original STS-5 heating, the orbiter can afford to lose only one TPS tile at the center or two TPS tiles at the corner (spar-rib juncture) of the lower surface of wing midspan bay 3. Under modified STS-5 heating, the orbiter cannot afford to lose even one TPS tile at the center or at the corner of the lower surface of wing midspan bay 3. For cases of eroded TPS tiles, the aluminum skin temperature rises relatively slowly with the decreasing thickness of the eroded central or corner TPS tile until most of the TPS tile is eroded away, and then increases exponentially toward the missing tile case.

  3. Ceramic-ceramic shell tile thermal protection system and method thereof

    NASA Technical Reports Server (NTRS)

    Riccitiello, Salvatore R. (Inventor); Smith, Marnell (Inventor); Goldstein, Howard E. (Inventor); Zimmerman, Norman B. (Inventor)

    1986-01-01

    A ceramic reusable, externally applied composite thermal protection system (TPS) is proposed. The system functions by utilizing a ceramic/ceramic upper shell structure which effectively separates its primary functions as a thermal insulator and as a load carrier to transmit loads to the cold structure. The composite tile system also prevents impact damage to the atmospheric entry vehicle thermal protection system. The composite tile comprises a structurally strong upper ceramic/ceramic shell manufactured from ceramic fibers and ceramic matrix meeting the thermal and structural requirements of a tile used on a re-entry aerospace vehicle. In addition, a lightweight high temperature ceramic lower temperature base tile is used. The upper shell and lower tile are attached by means effective to withstand the extreme temperatures (3000 to 3200F) and stress conditions. The composite tile may include one or more layers of variable density rigid or flexible thermal insulation. The assembly of the overall tile is facilitated by two or more locking mechanisms on opposing sides of the overall tile assembly. The assembly may occur subsequent to the installation of the lower shell tile on the spacecraft structural skin.

  4. A shifting level model algorithm that identifies aberrations in array-CGH data.

    PubMed

    Magi, Alberto; Benelli, Matteo; Marseglia, Giuseppina; Nannetti, Genni; Scordo, Maria Rosaria; Torricelli, Francesca

    2010-04-01

    Array comparative genomic hybridization (aCGH) is a microarray technology that allows one to detect and map genomic alterations. The goal of aCGH analysis is to identify the boundaries of the regions where the number of DNA copies changes (breakpoint identification) and then to label each region as loss, neutral, or gain (calling). In this paper, we introduce a new algorithm, based on the shifting level model (SLM), with the aim of locating regions with different means of the log(2) ratio in genomic profiles obtained from aCGH data. We combine the SLM algorithm with the CGHcall calling procedure and compare their performances with 5 state-of-the-art methods. When dealing with synthetic data, our method outperforms the other 5 algorithms in detecting the change in the number of DNA copies in the most challenging situations. For real aCGH data, SLM is able to locate all the cytogenetically mapped aberrations giving a smaller number of false-positive breakpoints than the compared methods. The application of the SLM algorithm is not limited to aCGH data. Our approach can also be used for the analysis of several emerging experimental strategies such as high-resolution tiling array. PMID:19948744

  5. Impact: a low cost, reconfigurable, digital beamforming common module building block for next generation phased arrays

    NASA Astrophysics Data System (ADS)

    Paulsen, Lee; Hoffmann, Ted; Fulton, Caleb; Yeary, Mark; Saunders, Austin; Thompson, Dan; Chen, Bill; Guo, Alex; Murmann, Boris

    2015-05-01

    Phased array systems offer numerous advantages to the modern warfighter in multiple application spaces, including Radar, Electronic Warfare, Signals Intelligence, and Communications. However, a lack of commonality in the underlying technology base for DoD Phased Arrays has led to static systems with long development cycles, slow technology refreshes in response to emerging threats, and expensive, application-specific sub-components. The IMPACT module (Integrated Multi-use Phased Array Common Tile) is a multi-channel, reconfigurable, cost-effective beamformer that provides a common building block for multiple, disparate array applications.

  6. Laboratory evaluation to reduce respirable crystalline silica dust when cutting concrete roofing tiles using a masonry saw.

    PubMed

    Carlo, Rebecca V; Sheehy, John; Feng, H Amy; Sieber, William K

    2010-04-01

    Respirable crystalline silica dust exposure in residential roofers is a recognized hazard resulting from cutting concrete roofing tiles. Roofers cutting tiles using masonry saws can be exposed to high concentrations of respirable dust. Silica exposures remain a serious threat for nearly two million U.S. construction workers. Although it is well established that respiratory diseases associated with exposure to silica dust are preventable, they continue to occur and cause disability or death. The effectiveness of both a commercially available local exhaust ventilation (LEV) system and a water suppression system in reducing silica dust was evaluated separately. The LEV system exhausted 0.24, 0.13, or 0.12 m(3)/sec of dust laden air, while the water suppression system supplied 0.13, 0.06, 0.03, or 0.02 L/sec of water to the saw blade. Using a randomized block design, implemented under laboratory conditions, the aforementioned conditions were evaluated independently on two types of concrete roofing tiles (s-shape and flat) using the same saw and blade. Each engineering control (LEV or water suppression) was replicated eight times, or four times for each type of tile. Analysis of variance was performed by comparing the mean airborne respirable dust concentrations generated during each run and engineering control treatment. The use of water controls and ventilation controls compared with the "no control" treatment resulted in a statistically significant (p < 0.05) reduction of mean respirable dust concentrations generated per tile cut. The percent reduction for respirable dust concentrations was 99% for the water control and 91% for the LEV. Results suggest that water is an effective method for reducing crystalline silica exposures. However, water damage potential, surface discolorations, cleanup, slip hazards, and other requirements may make the use of water problematic in many situations. Concerns with implementing an LEV system to control silica dust exposures include

  7. K-Band Phased Array Developed for Low- Earth-Orbit Satellite Communications

    NASA Technical Reports Server (NTRS)

    Anzic, Godfrey

    1999-01-01

    Future rapid deployment of low- and medium-Earth-orbit satellite constellations that will offer various narrow- to wide-band wireless communications services will require phased-array antennas that feature wide-angle and superagile electronic steering of one or more antenna beams. Antennas, which employ monolithic microwave integrated circuits (MMIC), are perfectly suited for this application. Under a cooperative agreement, an MMIC-based, K-band phased-array antenna is being developed with 50/50 cost sharing by the NASA Lewis Research Center and Raytheon Systems Company. The transmitting array, which will operate at 19 gigahertz (GHz), is a state-of-the-art design that features dual, independent, electronically steerable beam operation ( 42 ), a stand-alone thermal management, and a high-density tile architecture. This array can transmit 622 megabits per second (Mbps) in each beam from Earth orbit to small Earth terminals. The weight of the total array package is expected to be less than 8 lb. The tile integration technology (flip chip MMIC tile) chosen for this project represents a major advancement in phased-array engineering and holds much promise for reducing manufacturing costs.

  8. Visible diffraction from quasi-crystalline arrays of carbon nanotubes

    NASA Astrophysics Data System (ADS)

    Butler, Timothy P.; Butt, Haider; Wilkinson, Timothy D.; Amaratunga, Gehan A. J.

    2015-08-01

    Large area arrays of vertically-aligned carbon nanotubes (VACNTs) are patterned in a quasi-crystalline Penrose tile arrangement through electron beam lithography definition of Ni catalyst dots and subsequent nanotube growth by plasma-enhanced chemical vapour deposition. When illuminated with a 532 nm laser beam high-quality and remarkable diffraction patterns are seen. The diffraction is well matched to theoretical calculations which assume apertures to be present at the location of the VACNTs for transmitted light. The results show that VACNTs act as diffractive elements in reflection and can be used as spatially phased arrays for producing tailored diffraction patterns.

  9. Interagency arraying

    NASA Astrophysics Data System (ADS)

    Cox, Henry G.

    Activities performed to match ground aperture requirements for the Neptune encounter in August 1989 with the expected capabilities of the JPL Deep Space Network (DSN) are discussed. Ground aperture requirements, DSN capabilities, and the capabilities of other agencies are reviewed. The design and configurations of the receiver subsystem, combiner subsystem, monitor and control subsystem, recording subsystem, and supporting subsystems are described. The implementation of the Very Large Array-Goldstone Telemetry Array is discussed, and the differences involved with the Parkes-Canberra Telemetry Array implementation are highlighted. The operational concept is addressed.

  10. Assembly of a tile-based multilayered DNA nanostructure

    NASA Astrophysics Data System (ADS)

    Son, Junyoung; Lee, Junywe; Tandon, Anshula; Kim, Byeonghoon; Yoo, Sanghyun; Lee, Chang-Won; Park, Sung Ha

    2015-04-01

    The Watson-Crick complementarity of DNA is exploited to construct periodically patterned nanostructures, and we herein demonstrate tile-based three dimensional (3D) multilayered DNA nanostructures that incorporate two design strategies: vertical growth and horizontal layer stacking with substrate-assisted growth. To this end, we have designed a periodically holed double-double crossover (DDX) template that can be used to examine the growth of the multilayer structures in both the vertical and horizontal directions. For vertical growth, the traditional 2D double crossover (DX) DNA lattice is seeded and grown vertically from periodic holes in the DDX template. For horizontal stacking, the DDX layers are stacked by binding the connector tiles between each layer. Although both types of multilayers exhibited successful formation, the observations with an atomic force microscope indicated that the DDX layer growth achieved with the horizontal stacking approach could be considered to be slightly better relative to the vertical growth of the DX layers in terms of uniformity, layer size, and discreteness. In particular, the newly designed DDX template layer provided a parallel arrangement between each domain with substrate-assisted growth. This kind of layer arrangement suggests a possibility of using our design scheme in the construction of other periodic structures.The Watson-Crick complementarity of DNA is exploited to construct periodically patterned nanostructures, and we herein demonstrate tile-based three dimensional (3D) multilayered DNA nanostructures that incorporate two design strategies: vertical growth and horizontal layer stacking with substrate-assisted growth. To this end, we have designed a periodically holed double-double crossover (DDX) template that can be used to examine the growth of the multilayer structures in both the vertical and horizontal directions. For vertical growth, the traditional 2D double crossover (DX) DNA lattice is seeded and grown

  11. Aerodynamic pressure and heating-rate distributions in tile gaps around chine regions with pressure gradients at a Mach number of 6.6

    NASA Technical Reports Server (NTRS)

    Hunt, L. Roane; Notestine, Kristopher K.

    1990-01-01

    Surface and gap pressures and heating-rate distributions were obtained for simulated Thermal Protection System (TPS) tile arrays on the curved surface test apparatus of the Langley 8-Foot High Temperature Tunnel at Mach 6.6. The results indicated that the chine gap pressures varied inversely with gap width because larger gap widths allowed greater venting from the gap to the lower model side pressures. Lower gap pressures caused greater flow ingress from the surface and increased gap heating. Generally, gap heating was greater in the longitudinal gaps than in the circumferential gaps. Gap heating decreased with increasing gap depth. Circumferential gap heating at the mid-depth was generally less than about 10 percent of the external surface value. Gap heating was most severe at local T-gap junctions and tile-to-tile forward-facing steps that caused the greatest heating from flow impingement. The use of flow stoppers at discrete locations reduced heating from flow impingement. The use of flow stoppers at discrete locations reduced heating in most gaps but increased heating in others. Limited use of flow stoppers or gap filler in longitudinal gaps could reduce gap heating in open circumferential gaps in regions of high surface pressure gradients.

  12. Computational method for estimating DNA copy numbers in normal samples, cancer cell lines, and solid tumors using array comparative genomic hybridization.

    PubMed

    Abkevich, Victor; Iliev, Diana; Timms, Kirsten M; Tran, Thanh; Skolnick, Mark; Lanchbury, Jerry S; Gutin, Alexander

    2010-01-01

    Genomic copy number variations are a typical feature of cancer. These variations may influence cancer outcomes as well as effectiveness of treatment. There are many computational methods developed to detect regions with deletions and amplifications without estimating actual copy numbers (CN) in these regions. We have developed a computational method capable of detecting regions with deletions and amplifications as well as estimating actual copy numbers in these regions. The method is based on determining how signal intensity from different probes is related to CN, taking into account changes in the total genome size, and incorporating into analysis contamination of the solid tumors with benign tissue. Hidden Markov Model is used to obtain the most likely CN solution. The method has been implemented for Affymetrix 500K GeneChip arrays and Agilent 244K oligonucleotide arrays. The results of CN analysis for normal cell lines, cancer cell lines, and tumor samples are presented. The method is capable of detecting copy number alterations in tumor samples with up to 80% contamination with benign tissue. Analysis of 178 cancer cell lines reveals multiple regions of common homozygous deletions and strong amplifications encompassing known tumor suppressor genes and oncogenes as well as novel cancer related genes. PMID:20706610

  13. Modelling the viscoelasticity of ceramic tiles by finite element

    NASA Astrophysics Data System (ADS)

    Pavlovic, Ana; Fragassa, Cristiano

    2016-05-01

    This research details a numerical method aiming at investigating the viscoelastic behaviour of a specific family of ceramic material, the Grès Porcelain, during an uncommon transformation, known as pyroplasticity, which occurs when a ceramic tile bends under a combination of thermal stress and own weight. In general, the theory of viscoelasticity can be considered extremely large and precise, but its application on real cases is particularly delicate. A time-depending problem, as viscoelasticity naturally is, has to be merged with a temperature-depending situation. This paper investigates how the viscoelastic response of bending ceramic materials can be modelled by commercial Finite Elements codes.

  14. New family of tilings of three-dimensional Euclidean space by tetrahedra and octahedra.

    PubMed

    Conway, John H; Jiao, Yang; Torquato, Salvatore

    2011-07-01

    It is well known that two regular tetrahedra can be combined with a single regular octahedron to tile (complete fill) three-dimensional Euclidean space . This structure was called the "octet truss" by Buckminster Fuller. It was believed that such a tiling, which is the Delaunay tessellation of the face-centered cubic (fcc) lattice, and its closely related stacking variants, are the only tessellations of that involve two different regular polyhedra. Here we identify and analyze a unique family comprised of a noncountably infinite number of periodic tilings of whose smallest repeat tiling unit consists of one regular octahedron and six smaller regular tetrahedra. We first derive an extreme member of this unique tiling family by showing that the "holes" in the optimal lattice packing of octahedra, obtained by Minkowski over a century ago, are congruent tetrahedra. This tiling has 694 distinct concave (i.e., nonconvex) repeat units, 24 of which possess central symmetry, and hence is distinctly different and combinatorically richer than the fcc tetrahedra-octahedra tiling, which only has two distinct tiling units. Then we construct a one-parameter family of octahedron packings that continuously spans from the fcc to the optimal lattice packing of octahedra. We show that the "holes" in these packings, except for the two extreme cases, are tetrahedra of two sizes, leading to a family of periodic tilings with units composed four small tetrahedra and two large tetrahedra that contact an octahedron. These tilings generally possess 2,068 distinct concave tiling units, 62 of which are centrally symmetric. PMID:21690370

  15. New family of tilings of three-dimensional Euclidean space by tetrahedra and octahedra

    PubMed Central

    Conway, John H.; Jiao, Yang; Torquato, Salvatore

    2011-01-01

    It is well known that two regular tetrahedra can be combined with a single regular octahedron to tile (complete fill) three-dimensional Euclidean space . This structure was called the “octet truss” by Buckminster Fuller. It was believed that such a tiling, which is the Delaunay tessellation of the face-centered cubic (fcc) lattice, and its closely related stacking variants, are the only tessellations of that involve two different regular polyhedra. Here we identify and analyze a unique family comprised of a noncountably infinite number of periodic tilings of whose smallest repeat tiling unit consists of one regular octahedron and six smaller regular tetrahedra. We first derive an extreme member of this unique tiling family by showing that the “holes” in the optimal lattice packing of octahedra, obtained by Minkowski over a century ago, are congruent tetrahedra. This tiling has 694 distinct concave (i.e., nonconvex) repeat units, 24 of which possess central symmetry, and hence is distinctly different and combinatorically richer than the fcc tetrahedra-octahedra tiling, which only has two distinct tiling units. Then we construct a one-parameter family of octahedron packings that continuously spans from the fcc to the optimal lattice packing of octahedra. We show that the “holes” in these packings, except for the two extreme cases, are tetrahedra of two sizes, leading to a family of periodic tilings with units composed four small tetrahedra and two large tetrahedra that contact an octahedron. These tilings generally possess 2,068 distinct concave tiling units, 62 of which are centrally symmetric. PMID:21690370

  16. Radioactivity measurement of primordial radionuclides in and dose evaluation from marble and glazed tiles used as covering building materials in Turkey.

    PubMed

    Turhan, Ş; Varinlioğlu, A

    2012-09-01

    Measurements of the natural radioactivity arising from primordial radionuclides ((226)Ra, (232)Th and (40)K) in marble and glazed tile samples used covering building materials in Turkey were carried out by gamma-ray spectrometer with a high purity germanium detector. The mean activity concentrations of the (226)Ra, (232)Th and (40)K in marble and glazed tile samples were found as 8.2, 5.5 and 58.1 Bq kg(-1) and 81.2, 65.4 and 450.1 Bq kg(-1), respectively. The radiation doses received by occupants of buildings in which the sample marble and glazed tiles might be used are estimated using measured activity concentrations of constituent primordial radionuclides and dose conversion factors evaluated by the European Commission from models of tile use. Results obtained are presented for each radionuclide, analysed and compared with relevant national and international legislation, guidance and report, and with the results obtained from other studies. Results show that the use of such decorative building materials in the construction of domestic homes or workplaces in Turkey is unlikely to lead to any significant radiation exposure to the occupants. PMID:22492819

  17. Large-scale immunopurification of ribonucleoprotein complexes from Drosophila nucleoplasmic extracts for tiling microarrays.

    PubMed

    Rio, Donald C

    2014-03-01

    It is of interest to be able to define sets of cellular RNAs associated with specific RNA-binding proteins. This "guilt by association" can lead to new insights into how RNA-binding proteins modulate posttranscriptional gene expression of specific target RNAs. To identify these RNAs, antibodies against RNA-binding proteins can be used to immunopurify endogenous RNA-protein complexes from cells, and then the associated RNAs can be characterized. The method described here was developed to identify binding regions on nuclear transcripts for Drosophila heterogeneous nuclear ribonucleoproteins (hnRNPs). An antibody is added to an RNP extract and incubated to allow antigen-antibody complexes to form. The antibody-antigen complexes are then retrieved by binding of the antibody constant region to staphylococcal Protein A immobilized on Sepharose beads. The bead-immobilized complexes are then washed and RNA is prepared. The RNA is used to generate random-primed cDNA, cRNA, and biotinlyated cDNA probes for use on Affymetrix whole-genome Drosophila tiling arrays. PMID:24591694

  18. Modelling runoff on ceramic tile roofs using the kinematic wave equations.

    PubMed

    Silveira, A; Abrantes, J R C B; de Lima, J L M P; Lira, L C

    2016-01-01

    Generally, roofs are the best candidates for rainwater harvesting. In this context, the correct evaluation of the quantity and quality of runoff from roofs is essential to effectively design rainwater harvesting systems. This study aims to evaluate the performance of a kinematic wave based numerical model in simulating runoff on sloping roofs, by comparing the numerical results with the ones obtained from laboratory rainfall simulations on a real-scale Lusa ceramic tile roof. For all studied slopes, simulated discharge hydrographs had a good adjust to observed ones. Coefficient of determination and Nash-Sutcliffe efficiency values were close to 1.0. Particularly, peak discharges, times to peak, peak durations and runoff volumes were very well simulated. PMID:27232420

  19. Fracture characterisation using geoelectric null-arrays

    NASA Astrophysics Data System (ADS)

    Falco, Pierik; Negro, François; Szalai, Sándor; Milnes, Ellen

    2013-06-01

    The term "geoelectric null-array" is used for direct current electrode configurations yielding a potential difference of zero above a homogeneous half-space. This paper presents a comparative study of the behaviour of three null-arrays, midpoint null-array (MAN), Wenner-γ null-array and Schlumberger null-array in response to a fracture, both in profiling and in azimuthal mode. The main objective is to determine which array(s) best localise fractures or best identify their orientation. Forward modelling of the three null-arrays revealed that the Wenner-γ and Schlumberger null-arrays localise vertical fractures the most accurately, whilst the midpoint null-array combined with the Schlumberger null-array allows accurate orientation of a fracture. Numerical analysis then served as a basis to interpret the field results. Field test measurements were carried out above a quarry in Les Breuleux (Switzerland) with the three null-arrays and classical arrays. The results were cross-validated with quarry-wall geological mapping. In real field circumstances, the Wenner-γ null-array proved to be the most efficient and accurate in localising fractures. The orientations of the fractures according to the numerical results were most efficiently determined with the midpoint null-array, whilst the Schlumberger null-array adds accuracy to the results. This study shows that geoelectrical null-arrays are more suitable than classical arrays for the characterisation of fracture geometry.

  20. Early Observations with The Murchison Widefield Array.

    NASA Astrophysics Data System (ADS)

    Mitchell, Daniel; MWA Collaboration

    2009-01-01

    The Murchison Widefield Array (MWA), one of the demonstrator projects for the Square Kilometre Array, is a next-generation radio telescope being built in Australia. The MWA will study cosmological reionization, the sun, space weather, and time variability of the radio sky between 80 and 300 MHz, with construction of the full 512-tile system to be complete by mid 2010. As is the case with other future large low-frequency arrays, the visibility data rate produced is extremely large; the correlator, with 3000 fully-polarized frequency channels, is 20 GB/s (a few Peta-Bytes/day). It is impractical to store data being generated at this rate, and software is currently being developed to calibrate the visibilities and form images from them in real time. Relatively rapid phase and polarization distortions due to the ionosphere set the cadence for the real-time system, with a complete cycle of calibration, imaging and image de-distortion completed every 8 seconds. Furthermore, the gain and polarization response of the antennas need to be measured and accounted for to reach the challenging dynamic range requirements. The software will run on-site on a high-throughput, real-time computing cluster, at several tera-flops. In the second half of 2008 and early 2009, a series of early observations are being carried out at the MWA site with new generation dipoles, beamformers and receivers. A major objective of these site visits will be to gather information on the antenna primary beams, the sky and the ionosphere, as we prepare to commission a sub-array constructed from the first 32 tiles in mid 2009. Data from these observations will also be used for testing of the real-time calibration and imaging system. In this poster we will present results from these early observations, with an emphasis on some of the main technical challenges.

  1. Detecting novel genes with sparse arrays

    PubMed Central

    Haiminen, Niina; Smit, Bart; Rautio, Jari; Vitikainen, Marika; Wiebe, Marilyn; Martinez, Diego; Chee, Christine; Kunkel, Joe; Sanchez, Charles; Nelson, Mary Anne; Pakula, Tiina; Saloheimo, Markku; Penttilä, Merja; Kivioja, Teemu

    2014-01-01

    Species-specific genes play an important role in defining the phenotype of an organism. However, current gene prediction methods can only efficiently find genes that share features such as sequence similarity or general sequence characteristics with previously known genes. Novel sequencing methods and tiling arrays can be used to find genes without prior information and they have demonstrated that novel genes can still be found from extensively studied model organisms. Unfortunately, these methods are expensive and thus are not easily applicable, e.g., to finding genes that are expressed only in very specific conditions. We demonstrate a method for finding novel genes with sparse arrays, applying it on the 33.9 Mb genome of the filamentous fungus Trichoderma reesei. Our computational method does not require normalisations between arrays and it takes into account the multiple-testing problem typical for analysis of microarray data. In contrast to tiling arrays, that use overlapping probes, only one 25mer microarray oligonucleotide probe was used for every 100 b. Thus, only relatively little space on a microarray slide was required to cover the intergenic regions of a genome. The analysis was done as a by-product of a conventional microarray experiment with no additional costs. We found at least 23 good candidates for novel transcripts that could code for proteins and all of which were expressed at high levels. Candidate genes were found to neighbour ire1 and cre1 and many other regulatory genes. Our simple, low-cost method can easily be applied to finding novel species-specific genes without prior knowledge of their sequence properties. PMID:20691772

  2. A Scintillator tile-fiber preshower detector for the CDF Central Calorimeter

    SciTech Connect

    S. Lami

    2004-08-12

    The front face of the CDF central calorimeter is being equipped with a new Preshower detector, based on scintillator tiles read out by WLS fibers. A light yield of about 40 pe/MIP at the tile exit was obtained, exceeding the design requirements.

  3. Effect of strain isolator pad modulus on inplane strain in Shuttle Orbiter thermal protection system tiles

    NASA Technical Reports Server (NTRS)

    Sawyer, J. W.

    1983-01-01

    The thermal protection system used on the Space Shuttle orbiter to determine strains in the reusable surface insulation tiles under simulated flight loads was investigated. The effects of changes in the strain isolator pad (SIP) moduli on the strains in the tile were evaluated. To analyze the SIP/tile system, it was necessary to conduct tests to determine inplane tension and compression modulus and inplane failure strain for the densified layer of the tiles. It is shown that densification of the LI-900 tile material increases the modulus by a factor of 6 to 10 and reduces the failure strain by about 50%. It is indicated that the inplane strain levels in the Shuttle tiles in the highly loaded regions are approximately 2 orders of magnitude lower than the failure strain of the material. It is concluded that most of the LI-900 tiles on the Shuttle could be mounted on a SIP with tensile and shear stiffnesses 10 times those of the present SIP without inplane strain failure in the tile.

  4. Tritium distributions on tungsten and carbon tiles used in the JET divertor

    NASA Astrophysics Data System (ADS)

    Hatano, Y.; Yumizuru, K.; Likonen, J.; Koivuranta, S.; Ikonen, J.; Contributors, JET

    2016-02-01

    Tritium distributions on the W-coated divertor tiles used with Be wall in JET 2011-2012 ITER-like wall (JET-ILW) campaign were measured using an imaging plate (IP) technique. The high intensity of photo-stimulated luminescence (PSL) from IP was observed at the regions covered by deposited Be layers. However, the PSL intensity was not simply proportional to the thickness of the deposited Be layers; the shadowed region of Tile 4 showed the highest PSL intensity though the thickness of deposited Be layer on this region was smaller than that on Tile 0 and the apron of Tile 1 by an order of magnitude. These observations indicated the influence of impurities such as oxygen on tritium retention in the deposited Be layers. The C tiles used in the 2007-2009 JET carbon wall (JET-C) campaign were also examined. The high PSL intensity was observed for the regions covered with deposited C layers in this case. The area of tile surfaces covered by the deposited tritium-rich layers on the W-coated-tiles used in the JET-ILW campaign was significantly smaller than that on the C tiles used in the JET-C campaign.

  5. Supporting Students' Understanding of Linear Equations with One Variable Using Algebra Tiles

    ERIC Educational Resources Information Center

    Saraswati, Sari; Putri, Ratu Ilma Indra; Somakim

    2016-01-01

    This research aimed to describe how algebra tiles can support students' understanding of linear equations with one variable. This article is a part of a larger research on learning design of linear equations with one variable using algebra tiles combined with balancing method. Therefore, it will merely discuss one activity focused on how students…

  6. Automated 3D Damaged Cavity Model Builder for Lower Surface Acreage Tile on Orbiter

    NASA Technical Reports Server (NTRS)

    Belknap, Shannon; Zhang, Michael

    2013-01-01

    The 3D Automated Thermal Tool for Damaged Acreage Tile Math Model builder was developed to perform quickly and accurately 3D thermal analyses on damaged lower surface acreage tiles and structures beneath the damaged locations on a Space Shuttle Orbiter. The 3D model builder created both TRASYS geometric math models (GMMs) and SINDA thermal math models (TMMs) to simulate an idealized damaged cavity in the damaged tile(s). The GMMs are processed in TRASYS to generate radiation conductors between the surfaces in the cavity. The radiation conductors are inserted into the TMMs, which are processed in SINDA to generate temperature histories for all of the nodes on each layer of the TMM. The invention allows a thermal analyst to create quickly and accurately a 3D model of a damaged lower surface tile on the orbiter. The 3D model builder can generate a GMM and the correspond ing TMM in one or two minutes, with the damaged cavity included in the tile material. A separate program creates a configuration file, which would take a couple of minutes to edit. This configuration file is read by the model builder program to determine the location of the damage, the correct tile type, tile thickness, structure thickness, and SIP thickness of the damage, so that the model builder program can build an accurate model at the specified location. Once the models are built, they are processed by the TRASYS and SINDA.

  7. 40 CFR 427.70 - Applicability; description of the asbestos floor tile subcategory.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... asbestos floor tile subcategory. 427.70 Section 427.70 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) EFFLUENT GUIDELINES AND STANDARDS (CONTINUED) ASBESTOS MANUFACTURING POINT SOURCE CATEGORY Asbestos Floor Tile Subcategory § 427.70 Applicability; description of the asbestos floor...

  8. 40 CFR 427.70 - Applicability; description of the asbestos floor tile subcategory.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... asbestos floor tile subcategory. 427.70 Section 427.70 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) EFFLUENT GUIDELINES AND STANDARDS (CONTINUED) ASBESTOS MANUFACTURING POINT SOURCE CATEGORY Asbestos Floor Tile Subcategory § 427.70 Applicability; description of the asbestos floor...

  9. 40 CFR 427.70 - Applicability; description of the asbestos floor tile subcategory.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... asbestos floor tile subcategory. 427.70 Section 427.70 Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) EFFLUENT GUIDELINES AND STANDARDS (CONTINUED) ASBESTOS MANUFACTURING POINT SOURCE CATEGORY Asbestos Floor Tile Subcategory § 427.70 Applicability; description of the asbestos floor...

  10. Tiled-grating compressor with uncompensated dispersion for near-field-intensity smoothing.

    PubMed

    Huang, H; Kessler, Terrance

    2007-07-01

    A tiled-grating compressor, in which the spatial dispersion is not completely compensated, reduces the near-field-intensity modulation caused by tiling gaps and provides near-field spatial filtering of the input laser beam, thus reducing the laser damage to the final optics. PMID:17603592

  11. Preferential flow estimates to an agricultural tile drain with implications for glyphosate transport

    USGS Publications Warehouse

    Stone, W.W.; Wilson, J.T.

    2006-01-01

    Agricultural subsurface drains, commonly referred to as tile drains, are potentially significant pathways for the movement of fertilizers and pesticides to streams and ditches in much of the Midwest. Preferential flow in the unsaturated zone provides a route for water and solutes to bypass the soil matrix and reach tile drains faster than predicted by traditional displacement theory. This paper uses chloride concentrations to estimate preferential flow contributions to a tile drain during two storms in May 2004. Chloride, a conservative anion, was selected as the tracer because of differences in chloride concentrations between the two sources of water to the tile drain, preferential and matrix flow. A strong correlation between specific conductance and chloride concentration provided a mechanism to estimate chloride concentrations in the tile drain throughout the storm hydrographs. A simple mixing analysis was used to identify the preferential flow component of the storm hydrograph. During two storms, preferential flow contributed 11 and 51% of total storm tile drain flow; the peak contributions, 40 and 81%, coincided with the peak tile drain flow. Positive relations between glyphosate [N-(phosphonomethyl)glycine] concentrations and preferential flow for the two storms suggest that preferential flow is an important transport pathway to the tile drain. ?? ASA, CSSA, SSSA.

  12. Space Shuttle Communications Coverage Analysis for Thermal Tile Inspection

    NASA Technical Reports Server (NTRS)

    Kroll, Quin D.; Hwu, Shian U.; Upanavage, Matthew; Boster, John P.; Chavez, Mark A.

    2009-01-01

    The space shuttle ultra-high frequency Space-to-Space Communication System has to provide adequate communication coverage for astronauts who are performing thermal tile inspection and repair on the underside of the space shuttle orbiter (SSO). Careful planning and quantitative assessment are necessary to ensure successful system operations and mission safety in this work environment. This study assesses communication systems performance for astronauts who are working in the underside, non-line-of-sight shadow region on the space shuttle. All of the space shuttle and International Space Station (ISS) transmitting antennas are blocked by the SSO structure. To ensure communication coverage at planned inspection worksites, the signal strength and link margin between the SSO/ISS antennas and the extravehicular activity astronauts, whose line-of-sight is blocked by vehicle structure, was analyzed. Investigations were performed using rigorous computational electromagnetic modeling techniques. Signal strength was obtained by computing the reflected and diffracted fields along the signal propagation paths between transmitting and receiving antennas. Radio frequency (RF) coverage was determined for thermal tile inspection and repair missions using the results of this computation. Analysis results from this paper are important in formulating the limits on reliable communication range and RF coverage at planned underside inspection and repair worksites.

  13. Tiling analysis of melting in strongly-coupled dusty plasma*

    NASA Astrophysics Data System (ADS)

    Suranga Ruhunusiri, W. D.; Feng, Yan; Liu, Bin; Goree, John

    2010-11-01

    A dusty plasma is an ionized gas containing micron-size particles of solid matter, which collect electrons and ions and become negatively charged. Due to large Coulomb interparticle potential energies, the microparticles represent a strongly-coupled plasma. In the absence of an external disturbance, the microparticles self-organize, arranging themselves in a crystalline lattice, due to their Coulomb interaction. If kinetic energy is added, the arrangement of microparticles becomes disordered, like atoms in a liquid. This melting process can be characterized by a proliferation of defects, which previous experimenters measured using Voronoi analysis. Here we use another method, tiling [1] to quantify defects. We demonstrate this method, which until now has been used only in simulations, in a dusty plasma experiment. A single layer of 4.83 μm polymer microparticles was electrically levitated in a glow discharge argon plasma. The lattice was melted by applying random kicks to the micoparticles from rastered laser beams. We imaged the particle positions and computed the corresponding tiling for both the crystalline lattice and liquid states. [1] Matthew A. Glaser, Phys. Rev A 41, 4585 (1990) ^*Work supported by NSF and NASA.

  14. Emergence of limit-periodic order in tiling models

    NASA Astrophysics Data System (ADS)

    Marcoux, Catherine; Byington, Travis W.; Qian, Zongjin; Charbonneau, Patrick; Socolar, Joshua E. S.

    2014-07-01

    A two-dimensional (2D) lattice model defined on a triangular lattice with nearest- and next-nearest-neighbor interactions based on the Taylor-Socolar monotile is known to have a limit-periodic ground state. The system reaches that state during a slow quench through an infinite sequence of phase transitions. We study the model as a function of the strength of the next-nearest-neighbor interactions and introduce closely related 3D models with only nearest-neighbor interactions that exhibit limit-periodic phases. For models with no next-nearest-neighbor interactions of the Taylor-Socolar type, there is a large degenerate class of ground states, including crystalline patterns and limit-periodic ones, but a slow quench still yields the limit-periodic state. For the Taylor-Socolar lattic model, we present calculations of the diffraction pattern for a particular decoration of the tile that permits exact expressions for the amplitudes and identify domain walls that slow the relaxation times in the ordered phases. For one of the 3D models, we show that the phase transitions are first order, with equilibrium structures that can be more complex than in the 2D case, and we include a proof of aperiodicity for a geometrically simple tile with only nearest-neighbor matching rules.

  15. Close-up of Shuttle Thermal Tiles in Space

    NASA Technical Reports Server (NTRS)

    2005-01-01

    Launched on July 26, 2005 from the Kennedy Space Center in Florida, STS-114 was classified as Logistics Flight 1. Among the Station-related activities of the mission were the delivery of new supplies and the replacement of one of the orbital outpost's Control Moment Gyroscopes (CMGs). STS-114 also carried the Raffaello Multi-Purpose Logistics Module and the External Stowage Platform-2. A major focus of the mission was the testing and evaluation of new Space Shuttle flight safety, which included new inspection and repair techniques. Upon its approach to the International Space Station (ISS), the Space Shuttle Discovery underwent a photography session in order to assess any damages that may have occurred during its launch and/or journey through Space. The mission's third and final Extra Vehicular Activity (EVA) included taking a close-up look and the repair of the damaged heat shield. Gap fillers were removed from between the orbiter's heat-shielding tiles located on the craft's underbelly. Never before had any repairs been done to an orbiter while still in space. This particular photo was taken by astronaut Stephen K. Robinson, STS-114 mission specialist, whose shadow is visible on the thermal protection tiles, and a portion of the Canadian built Remote Manipulator System (RMS) robotic arm and the Nile River is visible at the bottom.

  16. Non isothermal drying process optimisation - Drying of clay tiles

    NASA Astrophysics Data System (ADS)

    Vasić, M.; Radojević, Z.

    2015-11-01

    In our previous studies we have developed a model for determination of the variable effective diffusivity and identification of the exact transition points between possible drying mechanisms. The next goal was to develop a drying regime which could in advance characterize the real non isothermal process of drying clay tiles. In order to do this four isothermal experiments were recorded. Temperature and humidity were maintained at 350C / 75%; 450C / 70%; 450C / 60% and 500C / 60%; respectively in each experiment. All experimentally collected data were analyzed and the exact transition points between possible drying mechanisms were detected. Characteristic drying period (time) for each isothermal drying mechanism was also detected. The real, non-isothermal drying process was approximated by 5 segments. In each of these segments approximately isothermal drying condition were maintained. Temperature and humidity of the drying air, in the first four segments, was maintained on the same level as in recorded isothermal experiments while in the fifth segment, it were maintained at 700C / 40%. The duration of the first four segments were calculated from the diagrams Deff - t respectively for each experiment. The clay tile in experiment five was dried without cracking using the proposed non isothermal drying regime.

  17. Numerical methods for analysis of clay tile infills

    SciTech Connect

    Flanagan, R.D.; Tenbus, M.A.; Bennett, R.M.

    1993-10-20

    Recent Department of Energy requirements have led to a comprehensive evaluation of the industrial facilities at the Oak Ridge Y-12 Plant. The structures consist of simply connected steel frames infilled with structural clay tile walls. The objective of the evaluation was to determine the stability of the unreinforced infills, and whether they provide the lateral capacity necessary to resist the moderate seismic hazard at the site. Due to lack of information on the behavior of structural clay tile infills, various large-scale tests were performed to investigate the in-plane, out-of-plane and combined in-plane and out-of-plane behavior. The results of these tests are briefly summarized, and the development of analytical guidelines based on these tests is given. Little interaction between in-plane and out-of-plane loads was observed, both in terms of stiffness and strength. Out-of-plane stability can be examined panel by panel based on arching action. Inter-story drift does not appear to present a stability problem for the type of infill construction investigated. In-plane behavior may be adequately modeled with a nonlinear compression strut. A typical building is chosen for an illustrative application. The methodology and results of the seismic analysis are presented for this structure.

  18. Surface analysis of 1984/85 TFTR limiter tiles

    SciTech Connect

    Pontau, A.E.; Wampler, W.R.; Mills, B.E.; Doyle, B.L.; Wright, A.F.; Ulrickson, M.A.; LaMarche, P.H.; Dylla, H.F.; Fukuda, S.

    1985-01-01

    Bare POCO AXF-5Q graphite titles were installed as the plasma-facing surface of the TFTR movable limiter for a series of approx.2700 high power discharges (600 with up to 6 MW neutral beams). During this operating phase, erosion and deposition processes modified the surface of the limiter. In the regions of the most intense plasma contact, which reached temperatures over 2400C, only small amounts of metallic impurities (<5 x 10 W atoms/cmS) are observed during subsequent beta backscattering and proton-induced x-ray emission (PIXE) analysis. Also observed in these regions are several small areas of surface crazing, and scattered droplets of metals (approx.1 mm diameter) presumed to originate from melted internal hardware. In regions more removed from direct plasma contact, thicker metallic deposits are observed (approx.2 x 10 Y atoms/cmS). Surface roughness measured outside the intense plasma contact region is much more than the original POCO AXF-5Q graphite whereas within the plasma contact region, tile surfaces are somewhat smoother than they were initially. Two of the tiles in high heat flux regions broke during operation. The resulting geometry change led to areas of enhanced erosion and nearby redeposition of carbon. 5 figs.

  19. Self-Replication of Nanoscale tiles and patterns

    NASA Astrophysics Data System (ADS)

    Chaikin, Paul

    2012-02-01

    We want to make a ``non-biological'' system which can self-replicate. The idea is to design particles with specific and reversible and irreversible interactions, introduce seed motifs, and cycle the system in such a way that a copy is made. Repeating the cycle would double the number of offspring in each generation leading to exponential growth. Using the chemistry of DNA either on colloids or on DNA tiles makes the specific recognition part easy. In the case of DNA tiles we have in fact replicated the seed at least to the third generation. The DNA linkers can also be self-protected so that particles don't interact unless they are held together for sufficient time -- a nano-contact glue. Chemical modification of the DNA allows us to permanently crosslink hybridized strands for irreversible bonds and a new type of photolithography. We have also designed and produced colloidal particles that use novel ``lock and key'' geometries to get specific and reversible physical interactions.[4pt] With Tong Wang, Ruojie Sha, Remi Dreyfus, Mirjam E. Leunissen, Corinna Maass, David J. Pine, and Nadrian C. Seeman.

  20. Size-Topology Correlations and Crystallization in Tilings and Packings

    NASA Astrophysics Data System (ADS)

    Hilgenfeldt, Sascha

    2014-03-01

    Ever since its empirical formulation in 1928, Lewis`s law has intrigued scientists, postulating a linear correlation between the average in-plane area and the number of neighbors in a two-dimensional tiling. Many supporting and dissenting results have been reported in systems as diverse as foams, Voronoi tilings in glass models, and nanocrystals. A strong size-topology correlation is consistently observed, but it is often pronouncedly nonlinear. Recently, a variant of the granocentric model explained numerous cases of nonlinear correlations, but cannot account for the linear version of the law. We revisit Lewis's original work by conducting more extensive experiments on cucumber epidermis tissue. The data confirms the linear law, but also shows that the individual cells have a pronounced anisotropy, not present in systems with nonlinear correlation laws. We demonstrate how the granocentric model can be modified taking into account the cell anisotropy, and how this feature is capable of reproducing the linear Lewis law, as well as other characteristic differences in size-topology statistical quantities. The model should be generally applicable to jammed, plane-filling systems and identifies domain anisotropy as an important ingredient in their statistical description.

  1. Molecular Dissection Using Array Comparative Genomic Hybridization and Clinical Evaluation of An Infertile Male Carrier of An Unbalanced Y;21 Translocation: A Case Report and Review of The Literature.

    PubMed

    Orrico, Alfredo; Marseglia, Giuseppina; Pescucci, Chiara; Cortesi, Ambra; Piomboni, Paola; Giansanti, Andrea; Gerundino, Francesca; Ponchietti, Roberto

    2016-01-01

    Chromosomal defects are relatively frequent in infertile men however, translocations between the Y chromosome and autosomes are rare and less than 40 cases of Y-autosome translocation have been reported. In particular, only three individuals has been described with a Y;21 translocation, up to now. We report on an additional case of an infertile man in whom a Y;21 translocation was associated with the deletion of a large part of the Y chromosome long arm. Applying various techniques, including conventional cytogenetic procedures, fluorescence in situ hybridisation (FISH) analysis and array comparative genomic hybridization (array-CGH) studies, we identified a derivative chromosome originating from a fragment of the short arm of the chromosome Y translocated on the short arm of the 21 chromosome. The Y chromosome structural rearrangement resulted in the intactness of the entire short arm, including the sex-determining region Y (SRY) and the short stature homeobox (SHOX) loci, although translocated on the 21 chromosome, and the loss of a large part of the long arm of the Y chromosome, including azoospermia factor-a (AZFa), AZFb, AZFc and Yq heterochromatin regions. This is the first case in which a (Yp;21p) translocation has been ascertained using an array-CGH approach, thus reporting details of such a rearrangement at higher resolution. PMID:26985348

  2. Porosity Detection in Ceramic Armor Tiles via Ultrasonic Time-Of

    NASA Astrophysics Data System (ADS)

    Margetan, Frank J.; Richter, Nathaniel; Jensen, Terrence

    2011-06-01

    Some multilayer armor panels contain ceramic tiles as one constituent, and porosity in the tiles can affect armor performance. It is well known that porosity in ceramic materials leads to a decrease in ultrasonic velocity. We report on a feasibility study exploring the use of ultrasonic time-of-flight (TOF) to locate and characterize porous regions in armor tiles. The tiles in question typically have well-controlled thickness, thus simplifying the translation of TOF data into velocity data. By combining UT velocity measurements and X-ray absorption measurements on selected specimens, one can construct a calibration curve relating velocity to porosity. That relationship can then be used to translate typical ultrasonic C-scans of TOF-versus-position into C-scans of porosity-versus-position. This procedure is demonstrated for pulse/echo, focused-transducer inspections of silicon carbide (SiC) ceramic tiles.

  3. Advanced Modeling Strategies for the Analysis of Tile-Reinforced Composite Armor

    NASA Technical Reports Server (NTRS)

    Davila, Carlos G.; Chen, Tzi-Kang

    1999-01-01

    A detailed investigation of the deformation mechanisms in tile-reinforced armored components was conducted to develop the most efficient modeling strategies for the structural analysis of large components of the Composite Armored Vehicle. The limitations of conventional finite elements with respect to the analysis of tile-reinforced structures were examined, and two complementary optimal modeling strategies were developed. These strategies are element layering and the use of a tile-adhesive superelement. Element layering is a technique that uses stacks of shear deformable shell elements to obtain the proper transverse shear distributions through the thickness of the laminate. The tile-adhesive superelement consists of a statically condensed substructure model designed to take advantage of periodicity in tile placement patterns to eliminate numerical redundancies in the analysis. Both approaches can be used simultaneously to create unusually efficient models that accurately predict the global response by incorporating the correct local deformation mechanisms.

  4. Tony Rollins prepares a new tile for the Space Shuttle orbiter

    NASA Technical Reports Server (NTRS)

    1998-01-01

    In the Tile Fabrication Shop, Tony Rollins, with United Space Alliance, cuts a High-Temperature Reusable Surface Insulation (HRSI) tile on a gun stock contour milling machine. About 70 percent of a Space Shuttle orbiter's external surface is shielded from heat by a network of more than 24,000 tiles formed from a silica fiber compound. HRSI tiles cover the lower surface of the orbiter, areas around the forward windows, upper body flap, the base heat shield, the 'eyeballs' on the front of the Orbital Maneuvering System (OMS) pods, and the leading and trailing edges of the vertical stabilizer and the rudder speed brake. They are generally 6 inches square, but may also be as large as 12 inches square in some areas, and 1 to 5 inches thick. More advanced materials such as Flexible Insulation Blankets have replaced tiles on some upper surfaces of the orbiter.

  5. Porosity detection in ceramic armor tiles via ultrasonic time-of-flight

    SciTech Connect

    Margetan, Frank J.; Richter, Nathaniel; Jensen, Terrence

    2011-06-23

    Some multilayer armor panels contain ceramic tiles as one constituent, and porosity in the tiles can affect armor performance. It is well known that porosity in ceramic materials leads to a decrease in ultrasonic velocity. We report on a feasibility study exploring the use of ultrasonic time-of-flight (TOF) to locate and characterize porous regions in armor tiles. The tiles in question typically have well-controlled thickness, thus simplifying the translation of TOF data into velocity data. By combining UT velocity measurements and X-ray absorption measurements on selected specimens, one can construct a calibration curve relating velocity to porosity. That relationship can then be used to translate typical ultrasonic C-scans of TOF-versus-position into C-scans of porosity-versus-position. This procedure is demonstrated for pulse/echo, focused-transducer inspections of silicon carbide (SiC) ceramic tiles.

  6. K-Theory of Crossed Products of Tiling C*-Algebras by Rotation Groups

    NASA Astrophysics Data System (ADS)

    Starling, Charles

    2015-02-01

    Let Ω be a tiling space and let G be the maximal group of rotations which fixes Ω. Then the cohomology of Ω and Ω/ G are both invariants which give useful geometric information about the tilings in Ω. The noncommutative analog of the cohomology of Ω is the K-theory of a C*-algebra associated to Ω, and for translationally finite tilings of dimension 2 or less, the K-theory is isomorphic to the direct sum of cohomology groups. In this paper we give a prescription for calculating the noncommutative analog of the cohomology of Ω/ G, that is, the K-theory of the crossed product of the tiling C*-algebra by G. We also provide a table with some calculated K-groups for many common examples, including the Penrose and pinwheel tilings.

  7. Terahertz NDE Application for Corrosion Detection and Evaluation under Shuttle Tiles

    NASA Technical Reports Server (NTRS)

    Anastasi, Robert F.; Madaras, Eric I.; Seebo, Jeffrey P.; Smith, Stephen W.; Lomness, Janice K.; Hintze, Paul E.; Kammerer, Catherine C.; Winfree, William P.; Russell, Richard W.

    2007-01-01

    Pulsed Terahertz NDE is being examined as a method to inspect for possible corrosion under Space Shuttle Tiles. Other methods such as ultrasonics, infrared, eddy current and microwave technologies have demonstrable shortcomings for tile NDE. This work applies Terahertz NDE, in the frequency range between 50 GHz and 1 THz, for the inspection of manufactured corrosion samples. The samples consist of induced corrosion spots that range in diameter (2.54 to 15.2 mm) and depth (0.036 to 0.787 mm) in an aluminum substrate material covered with tiles. Results of these measurements are presented for known corrosion flaws both covered and uncovered and for blind tests with unknown corrosion flaws covered with attached tiles. The Terahertz NDE system is shown to detect all artificially manufactured corrosion regions under a Shuttle tile with a depth greater than 0.13 mm.

  8. An Automated Approach to Agricultural Tile Drain Detection and Extraction Utilizing High Resolution Aerial Imagery and Object-Based Image Analysis

    NASA Astrophysics Data System (ADS)

    Johansen, Richard A.

    Subsurface drainage from agricultural fields in the Maumee River watershed is suspected to adversely impact the water quality and contribute to the formation of harmful algal blooms (HABs) in Lake Erie. In early August of 2014, a HAB developed in the western Lake Erie Basin that resulted in over 400,000 people being unable to drink their tap water due to the presence of a toxin from the bloom. HAB development in Lake Erie is aided by excess nutrients from agricultural fields, which are transported through subsurface tile and enter the watershed. Compounding the issue within the Maumee watershed, the trend within the watershed has been to increase the installation of tile drains in both total extent and density. Due to the immense area of drained fields, there is a need to establish an accurate and effective technique to monitor subsurface farmland tile installations and their associated impacts. This thesis aimed at developing an automated method in order to identify subsurface tile locations from high resolution aerial imagery by applying an object-based image analysis (OBIA) approach utilizing eCognition. This process was accomplished through a set of algorithms and image filters, which segment and classify image objects by their spectral and geometric characteristics. The algorithms utilized were based on the relative location of image objects and pixels, in order to maximize the robustness and transferability of the final rule-set. These algorithms were coupled with convolution and histogram image filters to generate results for a 10km2 study area located within Clay Township in Ottawa County, Ohio. The eCognition results were compared to previously collected tile locations from an associated project that applied heads-up digitizing of aerial photography to map field tile. The heads-up digitized locations were used as a baseline for the accuracy assessment. The accuracy assessment generated a range of agreement values from 67.20% - 71.20%, and an average

  9. Microlens arrays

    NASA Astrophysics Data System (ADS)

    Hutley, Michael C.; Stevens, Richard F.; Daly, Daniel J.

    1992-04-01

    Microlenses have been with us for a long time as indeed the very word lens reminds us. Many early lenses,including those made by Hooke and Leeuwenhoek in the 17th century were small and resembled lentils. Many languages use the same word for both (French tilentillelt and German "Linse") and the connection is only obscure in English because we use the French word for the vegetable and the German for the optic. Many of the applications for arrays of inicrolenses are also well established. Lippmann's work on integral photography at the turn of the century required lens arrays and stimulated an interest that is very much alive today. At one stage, lens arrays played an important part in high speed photography and various schemes have been put forward to take advantage of the compact imaging properties of combinations of lens arrays. The fact that many of these ingenious schemes have not been developed to their full potential has to a large degree been due to the absence of lens arrays of a suitable quality and cost.

  10. Carbon nanotube array actuators

    NASA Astrophysics Data System (ADS)

    Geier, S.; Mahrholz, T.; Wierach, P.; Sinapius, M.

    2013-09-01

    Experimental investigations of highly vertically aligned carbon nanotubes (CNTs), also known as CNT-arrays, are the main focus of this paper. The free strain as result of an active material behavior is analyzed via a novel experimental setup. Previous test experiences of papers made of randomly oriented CNTs, also called Bucky-papers, reveal comparably low free strain. The anisotropy of aligned CNTs promises better performance. Via synthesis techniques like chemical vapor deposition (CVD) or plasma enhanced CVD (PECVD), highly aligned arrays of multi-walled carbon nanotubes (MWCNTs) are synthesized. Two different types of CNT-arrays are analyzed, morphologically first, and optically tested for their active characteristics afterwards. One type of the analyzed arrays features tube lengths of 750-2000 μm with a large variety of diameters between 20 and 50 nm and a wave-like CNT-shape. The second type features a maximum, almost uniform, length of 12 μm and a constant diameter of 50 nm. Different CNT-lengths and array types are tested due to their active behavior. As result of the presented tests, it is reported that the quality of orientation is the most decisive property for excellent active behavior. Due to their alignment, CNT-arrays feature the opportunity to clarify the actuation mechanism of architectures made of CNTs.

  11. Experimental aerodynamic heating to simulated space shuttle tiles in laminar and turbulent boundary layers with variable flow angles at a nominal Mach number of 7. M.S. Thesis - George Washington Univ., Nov. 1983

    NASA Technical Reports Server (NTRS)

    Avery, D. E.

    1985-01-01

    The heat transfer to simulated shuttle thermal protection system tiles was investigated experimentally by using a highly instrumented metallic thin wall tile arranged with other metal tiles in a staggered tile array. Cold wall heating rate data for laminar and turbulent flow were obtained in the Langley 8 foot high Temperature Tunnel at a nominal Mach number of 7, a nominal total temperature of 3300R, a free stream unit Reynolds number from 3.4 x 10 sup 5 to 2.2 10 sup 6 per foot, and a free stream dynamic pressure from 2.1 to 9.0 psia. Experimental data are presented to illustrate the effects of flow angularity and gap width on both local peak heating and overall heating loads. For the conditions of the present study, the results show that localized and total heating are sensitive to changes in flow angle only for the test conditions of turbulent boundary layer flow with high kinetic energy and that a flow angle from 30 deg to 50 deg will minimize the local heating.

  12. Tile Drainage Management Influences on Surface-Water and Groundwater Quality following Liquid Manure Application.

    PubMed

    Frey, Steven K; Topp, Ed; Ball, Bonnie R; Edwards, Mark; Gottschall, Natalie; Sunohara, Mark; Zoski, Erin; Lapen, David R

    2013-01-01

    This study investigated the potential for controlled tile drainage (CD) to reduce bacteria and nutrient loading to surface water and groundwater from fall-season liquid manure application (LMA) on four macroporous clay loam plots, of which two had CD and two had free-draining (FD) tiles. Rhodamine WT (RWT) was mixed into the manure and monitored in the tile water and groundwater following LMA. Tile water and groundwater quality were influenced by drainage management. Following LMA on the FD plots, RWT, nutrients, and bacteria moved rapidly via tiles to surface water; at the CD plots, tiles did not flow until the first post-LMA rainfall, so the immediate risk of LMA-induced contamination of surface water was abated. During the 36-d monitoring period, flow-weighted average specific conductance, redox potential, and turbidity, as well as total Kjeldahl N (TKN), total P (TP), NH-N, reactive P, and RWT concentrations, were higher in the CD tile effluent; however, because of lower tile discharge from the CD plots, there was no significant ( ≤ 0.05) difference in surface water nutrient and RWT loading between the CD and FD plots when all tiles were flowing. The TKN, TP, and RWT concentrations in groundwater also tended to be higher at the CD plots. Bacteria behaved differently than nutrients and RWT, with no significant difference in total coliform, , fecal coliform, fecal streptococcus, and concentrations between the CD and FD tile effluent; however, for all but , hourly loading was higher from the FD plots. Results indicate that CD has potential for mitigating bacteria movement to surface water. PMID:23673956

  13. Classification of Voronoi and Delone tiles in quasicrystals: I. General method

    NASA Astrophysics Data System (ADS)

    Masáková, Z.; Patera, J.; Zich, J.

    2003-02-01

    A new general method is presented which allows one to find all distinct Voronoi and Delone tiles in any quasicrystal from a large family. This includes the tiles which may be present with arbitrarily low density >0. At all stages, the method requires only consideration of a (possibly large) finite number of cases. Our method is applicable, in principle, to quasicrystals in any dimension and with any irrationality. This is the first of three papers where the Voronoi and Delone tilings are studied. Two-dimensional point sets, 'quasicrystals', arising from the A4-root lattice by means of the standard projection to a two-dimensional plane with the irrationality tau = 1/2(1 + surd5), are considered. In general, we require that the acceptance window be bounded with non-empty interior. Specific results are provided here for rhombic acceptance windows of any size oriented along the direction of simple roots of the Coxeter group H2. Within one quasicrystal the tiles are distinguished by their shape, size and orientation. The rhombic window case is indispensable for subsequent classification of Voronoi and Delone tiles in quasicrystals with general shape of the acceptance window. Voronoi and Delone tiles of quasicrystals with circular and decagonal windows of any size are given in subsequent papers. Let VT denote the set of distinct Voronoi tiles making up a quasicrystal with a given acceptance window. There are three VT sets of the 'generic' type and three of the 'singular' type. The latter occur for one precise value of the size of the acceptance window. Any other VT set is a uniform scaling of the tiles listed here. Similar results, differing in detail, are provided for the sets of distinct Delone tiles DT. Altogether there are four different sets DT of Delone tiles.

  14. Nitrate and Pesticide Transport From Tile-Drained Fields in the Willamette Valley, Oregon

    NASA Astrophysics Data System (ADS)

    Warren, K. L.; Rupp, D. E.; Selker, J. S.; Dragila, M. I.; Peachey, R. E.

    2002-12-01

    Tile drainage affects the hydrology and thus the solute transport on agricultural fields by increasing the volume of water that drains from the subsurface. Previous NAWQA studies have shown elevated nitrate levels in wells and high detection frequencies for selected pesticides in Willamette Valley streams. As a substantial area of Willamette Valley agricultural land is tile-drained, it is important to determine the role of tile drains in surface water and ground water pollution. Four fields in the Willamette Valley were instrumented to monitor tile effluent for two winter seasons. On two fields, surface runoff was also monitored for the second season. Field areas ranged from 3 to 30 acres and were cropped in grass, corn, or a grass/corn rotation. Tile effluent nitrate concentrations frequently exceeded 10 ppm on some fields. Flow-weighted averages for each field were 0.87 ppm and 1.36 ppm for two established grass fields, and 8.1 ppm and 14.4 ppm for grass fields that had recently grown corn. Mass losses ranged from 1.15%-6.45% of the applied nitrate through the tile drains. Diuron, Metolachlor, and Chlorpyrifos were tested in selected surface runoff and tile effluent samples. On one field, Metolachlor concentrations were similar in the tile drains and surface runoff. Concentrations in both sources were 10 times lower than the drinking water advisory for Metolachlor. In a second field, Chlorpyrifos concentrations were two orders of magnitude lower than drinking water advisories in both sources. On the same field, Diuron concentrations were significantly higher in the surface runoff than in the tile effluent. Diuron concentrations were 1-2 orders of magnitude higher during the first precipitation events after application in the surface runoff. On a third field, Diuron was at least 10 times lower than drinking water advisories in the tile effluent, with the highest concentrations found in samples collected within 21 days of pesticide application.

  15. The NMR phased array.

    PubMed

    Roemer, P B; Edelstein, W A; Hayes, C E; Souza, S P; Mueller, O M

    1990-11-01

    We describe methods for simultaneously acquiring and subsequently combining data from a multitude of closely positioned NMR receiving coils. The approach is conceptually similar to phased array radar and ultrasound and hence we call our techniques the "NMR phased array." The NMR phased array offers the signal-to-noise ratio (SNR) and resolution of a small surface coil over fields-of-view (FOV) normally associated with body imaging with no increase in imaging time. The NMR phased array can be applied to both imaging and spectroscopy for all pulse sequences. The problematic interactions among nearby surface coils is eliminated (a) by overlapping adjacent coils to give zero mutual inductance, hence zero interaction, and (b) by attaching low input impedance preamplifiers to all coils, thus eliminating interference among next nearest and more distant neighbors. We derive an algorithm for combining the data from the phased array elements to yield an image with optimum SNR. Other techniques which are easier to implement at the cost of lower SNR are explored. Phased array imaging is demonstrated with high resolution (512 x 512, 48-cm FOV, and 32-cm FOV) spin-echo images of the thoracic and lumbar spine. Data were acquired from four-element linear spine arrays, the first made of 12-cm square coils and the second made of 8-cm square coils. When compared with images from a single 15 x 30-cm rectangular coil and identical imaging parameters, the phased array yields a 2X and 3X higher SNR at the depth of the spine (approximately 7 cm). PMID:2266841

  16. A Framework for the Comparative Assessment of Neuronal Spike Sorting Algorithms towards More Accurate Off-Line and On-Line Microelectrode Arrays Data Analysis.

    PubMed

    Regalia, Giulia; Coelli, Stefania; Biffi, Emilia; Ferrigno, Giancarlo; Pedrocchi, Alessandra

    2016-01-01

    Neuronal spike sorting algorithms are designed to retrieve neuronal network activity on a single-cell level from extracellular multiunit recordings with Microelectrode Arrays (MEAs). In typical analysis of MEA data, one spike sorting algorithm is applied indiscriminately to all electrode signals. However, this approach neglects the dependency of algorithms' performances on the neuronal signals properties at each channel, which require data-centric methods. Moreover, sorting is commonly performed off-line, which is time and memory consuming and prevents researchers from having an immediate glance at ongoing experiments. The aim of this work is to provide a versatile framework to support the evaluation and comparison of different spike classification algorithms suitable for both off-line and on-line analysis. We incorporated different spike sorting "building blocks" into a Matlab-based software, including 4 feature extraction methods, 3 feature clustering methods, and 1 template matching classifier. The framework was validated by applying different algorithms on simulated and real signals from neuronal cultures coupled to MEAs. Moreover, the system has been proven effective in running on-line analysis on a standard desktop computer, after the selection of the most suitable sorting methods. This work provides a useful and versatile instrument for a supported comparison of different options for spike sorting towards more accurate off-line and on-line MEA data analysis. PMID:27239191

  17. A Framework for the Comparative Assessment of Neuronal Spike Sorting Algorithms towards More Accurate Off-Line and On-Line Microelectrode Arrays Data Analysis

    PubMed Central

    Pedrocchi, Alessandra

    2016-01-01

    Neuronal spike sorting algorithms are designed to retrieve neuronal network activity on a single-cell level from extracellular multiunit recordings with Microelectrode Arrays (MEAs). In typical analysis of MEA data, one spike sorting algorithm is applied indiscriminately to all electrode signals. However, this approach neglects the dependency of algorithms' performances on the neuronal signals properties at each channel, which require data-centric methods. Moreover, sorting is commonly performed off-line, which is time and memory consuming and prevents researchers from having an immediate glance at ongoing experiments. The aim of this work is to provide a versatile framework to support the evaluation and comparison of different spike classification algorithms suitable for both off-line and on-line analysis. We incorporated different spike sorting “building blocks” into a Matlab-based software, including 4 feature extraction methods, 3 feature clustering methods, and 1 template matching classifier. The framework was validated by applying different algorithms on simulated and real signals from neuronal cultures coupled to MEAs. Moreover, the system has been proven effective in running on-line analysis on a standard desktop computer, after the selection of the most suitable sorting methods. This work provides a useful and versatile instrument for a supported comparison of different options for spike sorting towards more accurate off-line and on-line MEA data analysis. PMID:27239191

  18. Antioxidant activity evaluation and HPLC-photodiode array/MS polyphenols analysis of pomegranate juice from selected italian cultivars: A comparative study.

    PubMed

    Fanali, Chiara; Belluomo, Maria Giovanna; Cirilli, Marco; Cristofori, Valerio; Zecchini, Maurizio; Cacciola, Francesco; Russo, Marina; Muleo, Rosario; Dugo, Laura

    2016-07-01

    Chemical composition of pomegranate juice can vary due to cultivar, area of cultivation, ripening, climate, and other variables. This study investigates the polyphenolic composition and antioxidant activity of juices obtained from six old Italian pomegranate cultivars. Fruit accessions physicochemical characteristics were determined. Total polyphenols content (TPC), anthocyanin content (TAC) and proanthocyanidin content (TPAC) were measured in the juice samples. Phenolic bioactive molecules were analyzed by HPLC-photodiode array (PDA)/ESI-MS in all the pomegranate juices. In total, seven nonanthocyanidinic and six anthocyanidinic compounds were identified. The six anthocyanins were found in all juices although at different amounts. These results were correlated with antioxidant activity measured by three different chemical assays: 2,2 diphenyl-1-picrylhydrazyl (DPPH(•) ) scavenging activity assay, Trolox equivalent antioxidant capacity (TEAC) method and ferric reducing-antioxidant power (FRAP) assay. Pomegranate juices obtained by six different varieties show variable polyphenolic content and antioxidant activity. The antioxidant capacity methods used have shown variable sensitivity, supporting the hypothesis that different methods for the assessment of antioxidant capacity of food compounds are indeed necessary, due to complexity of sample composition and assay chemical mechanism and sensitivity. Juices from Italian pomegranate show good levels of polyphenols content and antioxidant activity making them potential candidates for employment in the food industry. PMID:26814700

  19. Global Arrays

    SciTech Connect

    2006-02-23

    The Global Arrays (GA) toolkit provides an efficient and portable “shared-memory” programming interface for distributed-memory computers. Each process in a MIMD parallel program can asynchronously access logical blocks of physically distributed dense multi-dimensional arrays, without need for explicit cooperation by other processes. Unlike other shared-memory environments, the GA model exposes to the programmer the non-uniform memory access (NUMA) characteristics of the high performance computers and acknowledges that access to a remote portion of the shared data is slower than to the local portion. The locality information for the shared data is available, and a direct access to the local portions of shared data is provided. Global Arrays have been designed to complement rather than substitute for the message-passing programming model. The programmer is free to use both the shared-memory and message-passing paradigms in the same program, and to take advantage of existing message-passing software libraries. Global Arrays are compatible with the Message Passing Interface (MPI).

  20. Pacific Array

    NASA Astrophysics Data System (ADS)

    Kawakatsu, H.; Takeo, A.; Isse, T.; Nishida, K.; Shiobara, H.; Suetsugu, D.

    2014-12-01

    Based on our recent results on broadband ocean bottom seismometry, we propose a next generation large-scale array experiment in the ocean. Recent advances in ocean bottom broadband seismometry (e.g., Suetsugu & Shiobara, 2014, Annual Review EPS), together with advances in the seismic analysis methodology, have now enabled us to resolve the regional 1-D structure of the entire lithosphere/asthenosphere system, including seismic anisotropy (both radial and azimuthal), with deployments of ~10-15 broadband ocean bottom seismometers (BBOBSs) (namely "ocean-bottom broadband dispersion survey"; Takeo et al., 2013, JGR; Kawakatsu et al., 2013, AGU; Takeo, 2014, Ph.D. Thesis; Takeo et al., 2014, JpGU). Having ~15 BBOBSs as an array unit for 2-year deployment, and repeating such deployments in a leap-frog way (an array of arrays) for a decade or so would enable us to cover a large portion of the Pacific basin. Such efforts, not only by giving regional constraints on the 1-D structure, but also by sharing waveform data for global scale waveform tomography, would drastically increase our knowledge of how plate tectonics works on this planet, as well as how it worked for the past 150 million years. International collaborations might be sought.