Science.gov

Sample records for core junctions modelling

  1. Electrostatic model of radial pn junction nanowires

    NASA Astrophysics Data System (ADS)

    Chia, A. C. E.; LaPierre, R. R.

    2013-08-01

    Poisson's equation is solved for a radial pn junction nanowire (NW) with surface depletion. This resulted in a model capable of giving radial energy band and electric field profiles for any arbitrary core/shell doping density, core/shell dimensions, and surface state density. Specific cases were analyzed to extract pertinent underlying physics, while the relationship between NW specifications and the depletion of the NW were examined to optimize the built-in potential across the junction. Additionally, the model results were compared with experimental results in literature to good agreement. Finally, an optimum device design is proposed to satisfy material, optical, and electrostatic constraints in high efficiency NW solar cells.

  2. A Cul-3-BTB ubiquitylation pathway regulates junctional levels and asymmetry of core planar polarity proteins

    PubMed Central

    Strutt, Helen; Searle, Elizabeth; Thomas-MacArthur, Victoria; Brookfield, Rosalind; Strutt, David

    2013-01-01

    The asymmetric localisation of core planar polarity proteins at apicolateral junctions is required to specify cell polarity in the plane of epithelia. This asymmetric distribution of the core proteins is proposed to require amplification of an initial asymmetry by feedback loops. In addition, generation of asymmetry appears to require the regulation of core protein levels, but the importance of such regulation and the underlying mechanisms is unknown. Here we show that ubiquitylation acts through more than one mechanism to control core protein levels in Drosophila, and that without this regulation cellular asymmetry is compromised. Levels of Dishevelled at junctions are regulated by a Cullin-3-Diablo/Kelch ubiquitin ligase complex, the activity of which is most likely controlled by neddylation. Furthermore, activity of the deubiquitylating enzyme Fat facets is required to maintain Flamingo levels at junctions. Notably, ubiquitylation does not alter the total cellular levels of Dishevelled or Flamingo, but only that of the junctional population. When junctional core protein levels are either increased or decreased by disruption of the ubiquitylation machinery, their asymmetric localisation is reduced and this leads to disruption of planar polarity at the tissue level. Loss of asymmetry by altered core protein levels can be explained by reference to feedback models for amplification of asymmetry. PMID:23487316

  3. Pasiflora proteins are novel core components of the septate junction.

    PubMed

    Deligiannaki, Myrto; Casper, Abbie L; Jung, Christophe; Gaul, Ulrike

    2015-09-01

    Epithelial sheets play essential roles as selective barriers insulating the body from the environment and establishing distinct chemical compartments within it. In invertebrate epithelia, septate junctions (SJs) consist of large multi-protein complexes that localize at the apicolateral membrane and mediate barrier function. Here, we report the identification of two novel SJ components, Pasiflora1 and Pasiflora2, through a genome-wide glial RNAi screen in Drosophila. Pasiflora mutants show permeable blood-brain and tracheal barriers, overelongated tracheal tubes and mislocalization of SJ proteins. Consistent with the observed phenotypes, the genes are co-expressed in embryonic epithelia and glia and are required cell-autonomously to exert their function. Pasiflora1 and Pasiflora2 belong to a previously uncharacterized family of tetraspan membrane proteins conserved across the protostome-deuterostome divide. Both proteins localize at SJs and their apicolateral membrane accumulation depends on other complex components. In fluorescence recovery after photobleaching experiments we demonstrate that pasiflora proteins are core SJ components as they are required for complex formation and exhibit restricted mobility within the membrane of wild-type epithelial cells, but rapid diffusion in cells with disrupted SJs. Taken together, our results show that Pasiflora1 and Pasiflora2 are novel integral components of the SJ and implicate a new family of tetraspan proteins in the function of these ancient and crucial cell junctions. PMID:26329602

  4. Pasiflora proteins are novel core components of the septate junction

    PubMed Central

    Deligiannaki, Myrto; Casper, Abbie L.; Jung, Christophe; Gaul, Ulrike

    2015-01-01

    Epithelial sheets play essential roles as selective barriers insulating the body from the environment and establishing distinct chemical compartments within it. In invertebrate epithelia, septate junctions (SJs) consist of large multi-protein complexes that localize at the apicolateral membrane and mediate barrier function. Here, we report the identification of two novel SJ components, Pasiflora1 and Pasiflora2, through a genome-wide glial RNAi screen in Drosophila. Pasiflora mutants show permeable blood-brain and tracheal barriers, overelongated tracheal tubes and mislocalization of SJ proteins. Consistent with the observed phenotypes, the genes are co-expressed in embryonic epithelia and glia and are required cell-autonomously to exert their function. Pasiflora1 and Pasiflora2 belong to a previously uncharacterized family of tetraspan membrane proteins conserved across the protostome-deuterostome divide. Both proteins localize at SJs and their apicolateral membrane accumulation depends on other complex components. In fluorescence recovery after photobleaching experiments we demonstrate that pasiflora proteins are core SJ components as they are required for complex formation and exhibit restricted mobility within the membrane of wild-type epithelial cells, but rapid diffusion in cells with disrupted SJs. Taken together, our results show that Pasiflora1 and Pasiflora2 are novel integral components of the SJ and implicate a new family of tetraspan proteins in the function of these ancient and crucial cell junctions. PMID:26329602

  5. Nanooptics of Plasmonic Nanomatryoshkas: Shrinking the Size of a Core-Shell Junction to Subnanometer.

    PubMed

    Lin, Li; Zapata, Mario; Xiong, Min; Liu, Zhonghui; Wang, Shanshan; Xu, Hong; Borisov, Andrei G; Gu, Hongchen; Nordlander, Peter; Aizpurua, Javier; Ye, Jian

    2015-10-14

    Quantum effects in plasmonic systems play an important role in defining the optical response of structures with subnanometer gaps. Electron tunneling across the gaps can occur, altering both the far-field optical response and the near-field confinement and enhancement. In this study, we experimentally and theoretically investigate plasmon coupling in gold "nanomatryoshka" (NM) nanoparticles with different core-shell separations. Plasmon coupling effects between the core and the shell become significant when their separation decreases to 15 nm. When their separation decreases to below 1 nm, the near- and far-field properties can no longer be described by classical approaches but require the inclusion of quantum mechanical effects such as electron transport through the self-assembled monolayer of molecular junction. In addition, surface-enhanced Raman scattering measurements indicate strong electron-transport induced charge transfer across the molecular junction. Our quantum modeling provides an estimate for the AC conductances of molecules in the junction. The insights acquired from this work pave the way for the development of novel quantum plasmonic devices and substrates for surface-enhanced Raman scattering. PMID:26375710

  6. An improved junction capacitance model for junction field-effect transistors

    NASA Astrophysics Data System (ADS)

    Ding, Hao; Liou, Juin J.; Cirba, Claude R.; Green, Keith

    2006-07-01

    A new junction capacitance model for the four-terminal junction field-effect transistor (JFET) is presented. With a single expression, the model, which is valid for different temperatures and a wide range of bias conditions, describes correctly the JFET junction capacitance behavior and capacitance drop-off phenomenon. The model has been verified using experimental data measured at Texas Instruments.

  7. Global Core Plasma Model

    NASA Technical Reports Server (NTRS)

    Gallagher, Dennis L.; Craven, P. D.; Comfort, R. H.

    1999-01-01

    Abstract. The Global Core Plasma Model (GCPM) provides, empirically derived, core plasma density as a function of geomagnetic and solar conditions throughout the inner magnetosphere. It is continuous in value and gradient and is composed of separate models for the ionosphere, the plasmasphere, the plasmapause, the trough, and the polar cap. The relative composition of plasmaspheric H+, He+, and O+ is included in the GCPM. A blunt plasmaspheric bulge and rotation of the bulge with changing geomagnetic conditions is included. The GCPM is an amalgam of density models, intended to serve as a framework for continued improvement as new measurements become available and are used to characterize core plasma density, composition, and temperature.

  8. Perispeckles are major assembly sites for the exon junction core complex

    PubMed Central

    Daguenet, Elisabeth; Baguet, Aurélie; Degot, Sébastien; Schmidt, Ute; Alpy, Fabien; Wendling, Corinne; Spiegelhalter, Coralie; Kessler, Pascal; Rio, Marie-Christine; Le Hir, Hervé; Bertrand, Edouard; Tomasetto, Catherine

    2012-01-01

    The exon junction complex (EJC) is loaded onto mRNAs as a consequence of splicing and regulates multiple posttranscriptional events. MLN51, Magoh, Y14, and eIF4A3 form a highly stable EJC core, but where this tetrameric complex is assembled in the cell remains unclear. Here we show that EJC factors are enriched in domains that we term perispeckles and are visible as doughnuts around nuclear speckles. Fluorescence resonance energy transfer analyses and EJC assembly mutants show that perispeckles do not store free subunits, but instead are enriched for assembled cores. At the ultrastructural level, perispeckles are distinct from interchromatin granule clusters that may function as storage sites for splicing factors and intermingle with perichromatin fibrils, where nascent RNAs and active RNA Pol II are present. These results support a model in which perispeckles are major assembly sites for the tetrameric EJC core. This subnuclear territory thus represents an intermediate region important for mRNA maturation, between transcription sites and splicing factor reservoirs and assembly sites. PMID:22419818

  9. Perispeckles are major assembly sites for the exon junction core complex.

    PubMed

    Daguenet, Elisabeth; Baguet, Aurélie; Degot, Sébastien; Schmidt, Ute; Alpy, Fabien; Wendling, Corinne; Spiegelhalter, Coralie; Kessler, Pascal; Rio, Marie-Christine; Le Hir, Hervé; Bertrand, Edouard; Tomasetto, Catherine

    2012-05-01

    The exon junction complex (EJC) is loaded onto mRNAs as a consequence of splicing and regulates multiple posttranscriptional events. MLN51, Magoh, Y14, and eIF4A3 form a highly stable EJC core, but where this tetrameric complex is assembled in the cell remains unclear. Here we show that EJC factors are enriched in domains that we term perispeckles and are visible as doughnuts around nuclear speckles. Fluorescence resonance energy transfer analyses and EJC assembly mutants show that perispeckles do not store free subunits, but instead are enriched for assembled cores. At the ultrastructural level, perispeckles are distinct from interchromatin granule clusters that may function as storage sites for splicing factors and intermingle with perichromatin fibrils, where nascent RNAs and active RNA Pol II are present. These results support a model in which perispeckles are major assembly sites for the tetrameric EJC core. This subnuclear territory thus represents an intermediate region important for mRNA maturation, between transcription sites and splicing factor reservoirs and assembly sites. PMID:22419818

  10. Model Building to Facilitate Understanding of Holliday Junction and Heteroduplex Formation, and Holliday Junction Resolution

    ERIC Educational Resources Information Center

    Selvarajah, Geeta; Selvarajah, Susila

    2016-01-01

    Students frequently expressed difficulty in understanding the molecular mechanisms involved in chromosomal recombination. Therefore, we explored alternative methods for presenting the two concepts of the double-strand break model: Holliday junction and heteroduplex formation, and Holliday junction resolution. In addition to a lecture and…

  11. Metallic Electrode: Semiconducting Nanotube Junction Model

    NASA Technical Reports Server (NTRS)

    Yamada, Toshishige; Biegel, Bryon (Technical Monitor)

    2001-01-01

    A model is proposed for two observed current-voltage (I-V) patterns in an experiment with a scanning tunneling microscope tip and a carbon nanotube [Collins et al., Science 278, 100 ('97)]. We claim that there are two contact modes for a tip (metal) -nanotube semi conductor) junction depending whether the alignment of the metal and semiconductor band structure is (1) variable (vacuum-gap) or (2) fixed (touching) with V. With the tip grounded, the tunneling case in (1) would produce large dI/dV with V > 0, small dI/dV with V < 0, and I = 0 near V = 0 for an either n- or p-nanotube. However, the Schottky mechanism in (2) would result in forward current with V < 0 for an n-nanotube, while with V > 0 for an p-nanotube. The two observed I-V patterns are thus entirely explained by a tip-nanotube contact of the two types, where the nanotube must be n-type. We apply this picture to the source-drain I-V characteristics in a long nanotube-channel field-effect-transistor (Zhou et al., Appl. Phys. Lett. 76, 1597 ('00)], and show that two independent metal-semiconductor junctions connected in series are responsible for the observed behavior.

  12. Model building to facilitate understanding of holliday junction and heteroduplex formation, and holliday junction resolution.

    PubMed

    Selvarajah, Geeta; Selvarajah, Susila

    2016-07-01

    Students frequently expressed difficulty in understanding the molecular mechanisms involved in chromosomal recombination. Therefore, we explored alternative methods for presenting the two concepts of the double-strand break model: Holliday junction and heteroduplex formation, and Holliday junction resolution. In addition to a lecture and computer-animated video, we included a model building activity using pipe cleaners. Biotechnology undergraduates (n = 108) used the model to simulate Holliday junction and heteroduplex formation, and Holliday junction resolution. Based on student perception, an average of 12.85 and 78.35% students claimed that they completely and partially understood the two concepts, respectively. A test conducted to ascertain their understanding about the two concepts showed that 66.1% of the students provided the correct response to the three multiple choice questions. A majority of the 108 students attributed the inclusion of model building to their better understanding of Holliday junction and heteroduplex formation, and Holliday junction resolution. This underlines the importance of incorporating model building, particularly in concepts that require spatial visualization. © 2016 by The International Union of Biochemistry and Molecular Biology, 44(4):381-390, 2016. PMID:26899144

  13. Silicon-core glass fibres as microwire radial-junction solar cells

    NASA Astrophysics Data System (ADS)

    Martinsen, F. A.; Smeltzer, B. K.; Nord, M.; Hawkins, T.; Ballato, J.; Gibson, U. J.

    2014-09-01

    Vertically aligned radial-junction solar cell designs offer potential improvements over planar geometries, as carrier generation occurs close to the junction for all absorption depths, but most production methods still require a single crystal substrate. Here, we report on the fabrication of such solar cells from polycrystalline, low purity (99.98%) p-type silicon starting material, formed into silicon core, silica sheath fibres using bulk glass draw techniques. Short segments were cut from the fibres, and the silica was etched from one side, which exposed the core and formed a conical cavity around it. We then used vapour deposition techniques to create p-i-n junction solar cells. Prototype cells formed from single fibres have shown conversion efficiencies up to 3.6%, despite the low purity of the starting material. This fabrication method has the potential to reduce the energy cost and the silicon volume required for solar cell production. Simulations were performed to investigate the potential of the conical cavity around the silicon core for light collection. Absorption of over 90% of the incident light was predicted, over a wide range of wavelengths, using these structures in combination with a 10% volume fraction of silicon.

  14. Models of the Earth's Core.

    PubMed

    Stevenson, D J

    1981-11-01

    Combined inferences from seismology, high-pressure experiment and theory, geomagnetism, fluid dynamics, and current views of terrestrial planetary evolution lead to models of the earth's core with the following properties. Core formation was contemporaneous with earth accretion; the core is not in chemical equilibrium with the mantle; the outer core is a fluid iron alloy containing significant quantities of lighter elements and is probably almost adiabatic and compositionally uniform; the more iron-rich inner solid core is a consequence of partial freezing of the outer core, and the energy release from this process sustains the earth's magnetic field; and the thermodynamic properties of the core are well constrained by the application of liquid-state theory to seismic and laboratory data. PMID:17839632

  15. Models of the earth's core

    NASA Technical Reports Server (NTRS)

    Stevenson, D. J.

    1981-01-01

    Combined inferences from seismology, high-pressure experiment and theory, geomagnetism, fluid dynamics, and current views of terrestrial planetary evolution lead to models of the earth's core with five basic properties. These are that core formation was contemporaneous with earth accretion; the core is not in chemical equilibrium with the mantle; the outer core is a fluid iron alloy containing significant quantities of lighter elements and is probably almost adiabatic and compositionally uniform; the more iron-rich inner solid core is a consequence of partial freezing of the outer core, and the energy release from this process sustains the earth's magnetic field; and the thermodynamic properties of the core are well constrained by the application of liquid-state theory to seismic and labroatory data.

  16. DNA Three Way Junction Core Decorated with Amino Acids-Like Residues-Synthesis and Characterization.

    PubMed

    Addamiano, Claudia; Gerland, Béatrice; Payrastre, Corinne; Escudier, Jean-Marc

    2016-01-01

    Construction and physico-chemical behavior of DNA three way junction (3WJ) functionalized by protein-like residues (imidazole, alcohol and carboxylic acid) at unpaired positions at the core is described. One 5'-C(S)-propargyl-thymidine nucleotide was specifically incorporated on each strand to react through a post synthetic CuACC reaction with either protected imidazolyl-, hydroxyl- or carboxyl-azide. Structural impacts of 5'-C(S)-functionalization were investigated to evaluate how 3WJ flexibility/stability is affected. PMID:27563857

  17. Dynamic gap junctional communication: a delimiting model for tissue responses.

    PubMed Central

    Christ, G J; Brink, P R; Ramanan, S V

    1994-01-01

    Gap junctions are aqueous intercellular channels formed by a diverse class of membrane-spanning proteins, known as connexins. These aqueous pores provide partial cytoplasmic continuity between cells in most tissues, and are freely permeable to a host of physiologically relevant second messenger molecules/ionic species (e.g., Ca2+, IP3, cAMP, cGMP). Despite the fact that these second messenger molecules/ionic species have been shown to alter junctional patency, there is no clear basis for understanding how dynamic and transient changes in the intracellular concentration of second messenger molecules might modulate the extent of intercellular communication among coupled cells. Thus, we have modified the tissue monolayer model of Ramanan and Brink (1990) to account for both the up-regulatory and down-regulatory effects on junctions by second messenger molecules that diffuse through gap junctions. We have chosen the vascular wall as our morphological correlate because of its anisotropy and large investment of gap junctions. The model allows us to illustrate the putative behavior of gap junctions under a variety of physiologically relevant conditions. The modeling studies demonstrated that transient alterations in intracellular second messenger concentrations are capable of producing 50-125% changes in the number of cells recruited into a functional syncytial unit, after activation of a single cell. Moreover, the model conditions required to demonstrate such physiologically relevant changes in intercellular diffusion among coupled cells are commonly observed in intact tissues and cultured cells. Images FIGURE 2 PMID:7811948

  18. Lunar magnetism. [primordial core model

    NASA Technical Reports Server (NTRS)

    Goldstein, M. L.

    1975-01-01

    It is shown, for a very simple model of the moon, that the existence of a primordial core magnetic field would give rise to a present day nonzero dipole external field. In the investigation a uniformly magnetized core embedded in a permeable mantle is considered. The significance of the obtained results for the conclusions reported by Runcorn (1975) is discussed. Comments provided by Runcorn to the discussion are also presented.

  19. Performance model assessment for multi-junction concentrating photovoltaic systems.

    SciTech Connect

    Riley, Daniel M.; McConnell, Robert.; Sahm, Aaron; Crawford, Clark; King, David L.; Cameron, Christopher P.; Foresi, James S.

    2010-03-01

    Four approaches to modeling multi-junction concentrating photovoltaic system performance are assessed by comparing modeled performance to measured performance. Measured weather, irradiance, and system performance data were collected on two systems over a one month period. Residual analysis is used to assess the models and to identify opportunities for model improvement.

  20. The influence of the instabilities in modelling arteriovenous junction haemodynamics.

    PubMed

    Broderick, Stephen P; Houston, J Graeme; Walsh, Michael T

    2015-10-15

    The arteriovenous junction is characterised by high flow rates, large pressure difference and typically a palpable thrill or audible bruit, associated with turbulent flow. However, the arteriovenous junction is frequently studied with the assumption of streamline flow. This assumption is based on the Reynolds number calculation, although other factors can contribute to turbulent generation. In this study, the presence of instabilities is examined and the influencing factors discussed. This was performed using a pseudo-realistic geometry with adapted graft angles, vein diameter, outflow split ratio and graft inlet velocity values. Correlation was performed between steady and unsteady averaged simulation cases with correlation performance ranked. Overall the arteriovenous junction is capable of possessing highly disturbed flows, in which strict modelling requirements are necessary to capture such instabilities and avoid erroneous conclusions. Vein diameter and flow split ratio contribute to turbulent generation, thus Reynolds number cannot be used as a sole turbulent criterion in the arteriovenous junction. PMID:26315920

  1. Moon model - An offset core.

    NASA Technical Reports Server (NTRS)

    Ransford, G.; Sjogren, W.

    1972-01-01

    The lunar model proposed helps to account for the offset of the center of gravity from the center of the optical figure, the moments of inertia of the Moon, the 'mascons,' the localization of the maria basins on the near side of the Moon, the igneous nature of rocks, and the remanent magnetism. In the proposed model the Moon has a core whose center is offset from the center of the outside spheroid towards the earth. Such a core will be formed if the Moon were entirely molten at some time in its past, and on solidification was synchronous with the earth.

  2. Application of Core Dynamics Modeling to Core-Mantle Interactions

    NASA Technical Reports Server (NTRS)

    Kuang, Weijia

    2003-01-01

    Observations have demonstrated that length of day (LOD) variation on decadal time scales results from exchange of axial angular momentum between the solid mantle and the core. There are in general four core-mantle interaction mechanisms that couple the core and the mantle. Of which, three have been suggested likely the dominant coupling mechanism for the decadal core-mantle angular momentum exchange, namely, gravitational core-mantle coupling arising from density anomalies in the mantle and in the core (including the inner core), the electromagnetic coupling arising from Lorentz force in the electrically conducting lower mantle (e.g. D-layer), and the topographic coupling arising from non-hydrostatic pressure acting on the core-mantle boundary (CMB) topography. In the past decades, most effort has been on estimating the coupling torques from surface geomagnetic observations (kinematic approach), which has provided insights on the core dynamical processes. In the meantime, it also creates questions and concerns on approximations in the studies that may invalidate the corresponding conclusions. The most serious problem is perhaps the approximations that are inconsistent with dynamical processes in the core, such as inconsistencies between the core surface flow beneath the CMB and the CMB topography, and that between the D-layer electric conductivity and the approximations on toroidal field at the CMB. These inconsistencies can only be addressed with numerical core dynamics modeling. In the past few years, we applied our MoSST (Modular, Scalable, Self-consistent and Three-dimensional) core dynamics model to study core-mantle interactions together with geodynamo simulation, aiming at assessing the effect of the dynamical inconsistencies in the kinematic studies on core-mantle coupling torques. We focus on topographic and electromagnetic core-mantle couplings and find that, for the topographic coupling, the consistency between the core flow and the CMB topography is

  3. Analytical modeling of the radial pn junction nanowire solar cells

    NASA Astrophysics Data System (ADS)

    Ali, Nouran M.; Allam, Nageh K.; Abdel Haleem, Ashraf M.; Rafat, Nadia H.

    2014-07-01

    In photovoltaic solar cells, radial p-n junctions have been considered a very promising structure to improve the carrier collection efficiency and accordingly the conversion efficiency. In the present study, the semiconductor equations, namely Poisson's and continuity equations for a cylindrical p-n junction solar cell, have been solved analytically. The analytical model is based on Green's function theory to calculate the current density, open circuit voltage, fill factor, and conversion efficiency. The model has been used to simulate p-n and p-i-n silicon radial solar cells. The validity and accuracy of the present simulator were confirmed through a comparison with previously published experimental and numerical reports.

  4. Haploinsufficiency for Core Exon Junction Complex Components Disrupts Embryonic Neurogenesis and Causes p53-Mediated Microcephaly.

    PubMed

    Mao, Hanqian; McMahon, John J; Tsai, Yi-Hsuan; Wang, Zefeng; Silver, Debra L

    2016-09-01

    The exon junction complex (EJC) is an RNA binding complex comprised of the core components Magoh, Rbm8a, and Eif4a3. Human mutations in EJC components cause neurodevelopmental pathologies. Further, mice heterozygous for either Magoh or Rbm8a exhibit aberrant neurogenesis and microcephaly. Yet despite the requirement of these genes for neurodevelopment, the pathogenic mechanisms linking EJC dysfunction to microcephaly remain poorly understood. Here we employ mouse genetics, transcriptomic and proteomic analyses to demonstrate that haploinsufficiency for each of the 3 core EJC components causes microcephaly via converging regulation of p53 signaling. Using a new conditional allele, we first show that Eif4a3 haploinsufficiency phenocopies aberrant neurogenesis and microcephaly of Magoh and Rbm8a mutant mice. Transcriptomic and proteomic analyses of embryonic brains at the onset of neurogenesis identifies common pathways altered in each of the 3 EJC mutants, including ribosome, proteasome, and p53 signaling components. We further demonstrate all 3 mutants exhibit defective splicing of RNA regulatory proteins, implying an EJC dependent RNA regulatory network that fine-tunes gene expression. Finally, we show that genetic ablation of one downstream pathway, p53, significantly rescues microcephaly of all 3 EJC mutants. This implicates p53 activation as a major node of neurodevelopmental pathogenesis following EJC impairment. Altogether our study reveals new mechanisms to help explain how EJC mutations influence neurogenesis and underlie neurodevelopmental disease. PMID:27618312

  5. Observation and Modeling of Single Wall Carbon Nanotube Bend Junctions

    NASA Technical Reports Server (NTRS)

    Han, Jie; Anantram, M. P.; Jaffe, R. L.; Kong, J.; Dai, H.; Saini, Subhash (Technical Monitor)

    1998-01-01

    Single wall carbon nanotube (SWNT) bends, with diameters from approx. 1.0 to 2.5 nm and bend angles from 18 deg. to 34 deg., are observed in catalytic decomposition of hydrocarbons at 600 - 1200 C. An algorithm using molecular dynamics simulation (MD) techniques is developed to model these structures that are considered to be SWNT junctions formed by topological defects (i.e. pentagon-heptagon pairs). The algorithm is used to predict the tube helicities and defect configurations for bend junctions using the observed tube diameters and bend angles. The number and arrangement of the defects at the junction interfaces are found to depend on the tube helicities and bend angle. The structural and energetic calculations using the Brenner potential show a number of stable junction configurations for each bend angle with the 34 deg. bends being more stable than the others. Tight binding calculations for local density of state (LDOS) and transmission coefficients are carried out to investigate electrical properties of the bend junctions.

  6. Extension of the ADC Charge-Collection Model to Include Multiple Junctions

    NASA Technical Reports Server (NTRS)

    Edmonds, Larry D.

    2011-01-01

    The ADC model is a charge-collection model derived for simple p-n junction silicon diodes having a single reverse-biased p-n junction at one end and an ideal substrate contact at the other end. The present paper extends the model to include multiple junctions, and the goal is to estimate how collected charge is shared by the different junctions.

  7. MCNP modelling of the PBMR equilibrium core

    SciTech Connect

    Albornoz, F.; Korochinsky, S.

    2006-07-01

    A complete MCNP model of the PBMR equilibrium core is presented, which accounts for the same fuel regions defined in the PBMR core management code, as well as for complete fuel and reflector temperature distributions. This comprehensive 3D model is the means to calculate and characterize the neutron and photon boundary sources of the equilibrium core, and is also used to support some specific core neutronic studies needing detailed geometry modelling. Due to the geometrical modelling approach followed, an unrealistic partial cutting of fuel kernels and pebbles is introduced in the model. The variations introduced by this partial cutting both on the packing fraction and on the uranium load of the modelled core and its corresponding effect on core reactivity and flux levels, have been investigated and quantified. A complete set of high-temperature cross-section data was applied to the calculation of the PBMR equilibrium core, and its effect on the calculated core reactivity is also reported. (authors)

  8. Inflow Models of Nearby Cores

    NASA Astrophysics Data System (ADS)

    De La Cruz, David; De Vries, C. H.; Arce, H. G.

    2012-01-01

    We obtained observations of nearby (d < 300 pc) isolated pre-stellar and Class 0 cores from the Caltech Submillimeter Observatory. The optically thick HCO+ J=3-2 rotational transition was observed in order to detect the blue-asymmetric infall signature often seen in pre-stellar cores. The asymmetric spectral line profiles were analyzed by using a 1-D radiative transfer model that assumes a uniform infall velocity and a realistic radial excitation profile. The model is able to reproduce the asymmetric line profile in most cases by varying only 5 physical cloud parameters. The analysis was used to obtain a reliable estimate of the infall rate. The sources presented here and observed in the HCO+ J=3-2 rotational transition were B228, CB130 SMM2, OPH MM 126, and RCRA SMM1A. Analysis of these spectra yielded some unexpected results. Our analysis did a good job at fitting the spectral lines in some sources while it performed poorly for others. We observed infall velocities ranging from -1.1, indicating expansion, to 0.4 km/s in these sources and found line center optical depths ranging from 0.03 to 520. The peak excitation temperature for the HCO+ J=3-2 transition was found to range from 3 to 57 K.

  9. The core legion object model

    SciTech Connect

    Lewis, M.; Grimshaw, A.

    1996-12-31

    The Legion project at the University of Virginia is an architecture for designing and building system services that provide the illusion of a single virtual machine to users, a virtual machine that provides secure shared object and shared name spaces, application adjustable fault-tolerance, improved response time, and greater throughput. Legion targets wide area assemblies of workstations, supercomputers, and parallel supercomputers, Legion tackles problems not solved by existing workstation based parallel processing tools; the system will enable fault-tolerance, wide area parallel processing, inter-operability, heterogeneity, a single global name space, protection, security, efficient scheduling, and comprehensive resource management. This paper describes the core Legion object model, which specifies the composition and functionality of Legion`s core objects-those objects that cooperate to create, locate, manage, and remove objects in the Legion system. The object model facilitates a flexible extensible implementation, provides a single global name space, grants site autonomy to participating organizations, and scales to millions of sites and trillions of objects.

  10. Summary of mathematical models for a conventional and vertical junction photoconverter

    NASA Technical Reports Server (NTRS)

    Heinbockel, J. H.

    1986-01-01

    The geometry and computer programming for mathematical models of a one-dimensional conventional photoconverter, a one-dimensional vertical junction photoconverter, a three-dimensional conventinal photoconverter, and a three-dimensional vertical junction solar cell are discussed.

  11. A Model for the Behavior of Magnetic Tunnel Junctions

    SciTech Connect

    Bryan John Baker

    2003-08-05

    A magnetic tunnel junction is a device that changes its electrical resistance with a change in an applied magnetic field. A typical junction consists of two magnetic electrodes separated by a nonmagnetic insulating layer. The magnetizations of the two electrodes can have two possible extreme configurations, parallel and antiparallel. The antiparallel configuration is observed to have the higher measured resistance and the parallel configuration has the lower resistance. To switch between these two configurations a magnetic field is applied to the device which is primarily used to change the orientation of the magnetization of one electrode usually called the free layer, although with sufficient high magnetic field the orientation of the magnetizations of both of the electrodes can be changed. The most commonly used models for describing and explaining the electronic behavior of tunnel junctions are the Simmons model and the Brinkman model. However, both of these models were designed for simple, spin independent tunneling. The Simmons model does not address the issue of applied magnetic fields nor does it address the form of the electronic band structure in the metallic electrodes, including the important factor of spin polarization. The Brinkman model is similar, the main difference between the two models being the shape of the tunneling barrier potential between the two electrodes. Therefore, the research conducted in this thesis has developed a new theoretical model that addresses these important issues starting from basic principles. The main features of the new model include: the development of equations for true spin dependent tunneling through the insulating barrier, the differences in the orientations of the electrode magnetizations on either side of the barrier, and the effects of the density of states function on the behavior of the junction. The present work has explored densities of states that are more realistic than the simplified free electron density

  12. Model results for graphene electrodes in molecular junctions

    NASA Astrophysics Data System (ADS)

    Motta, Carlo; Italo Trioni, Mario; Brivio, Gian Paolo; Lukose Sebastian, Kizhakeyil; Sánchez Portal, Daniel

    2012-02-01

    Graphene is a material with a high potential for nanoelectronic applications as transparent conductive electrode. In view of a graphene-based electronics, a possible way to bridge graphene electrodes is by molecular linkers either organic molecules or graphene-derived systems such as graphene nanoribbons (GNR). In the present work, we investigated the electronic and conductive properties of such junctions for two different devices. First we modeled a photochromic switch based on diarylethene molecules, which can be activated/deactivated by light. We found a large on/off current ratio, which can be improved by modifying the functional groups of the molecule. We then investigated the properties of graphene/GNR/graphene junctions, showing that their conductive properties can be tailored by changing the length and width of the GNR. The calculations have been carried out by using the non-equilibrium Green's function method combined with density functional theory.

  13. Accident prediction models for roads with minor junctions.

    PubMed

    Mountain, L; Fawaz, B; Jarrett, D

    1996-11-01

    The purpose of this study was to develop and validate a method for predicting expected accidents on main roads with minor junctions where traffic counts on the minor approaches are not available. The study was based on data for some 3800 km of highway in the U.K. including more than 5000 minor junctions. The highways consisted of both single and dual-carriageway roads in urban and rural areas. Generalized linear modelling was used to develop regression estimates of expected accidents for six highway categories and an empirical Bayes procedure was used to improve these estimates by combining them with accident counts. Accidents on highway sections were shown to be a non-linear function of exposure and minor junction frequency. For the purposes of estimating expected accidents, while the regression model estimates were shown to be preferable to accident counts, the best results were obtained using the empirical Bayes method. The latter was the only method that produced unbiased estimates of expected accidents for high-risk sites. PMID:9006638

  14. Performance model assessment for multi-junction concentrating photovoltaic systems.

    SciTech Connect

    Stein, Joshua S.; Riley, Daniel M.; McConnell, Robert.; Sahm, Aaron; Crawford, Clark; King, David L.; Cameron, Christopher P.; Foresi, James S.

    2010-03-01

    Four approaches to modeling multi-junction concentrating photovoltaic system performance are assessed by comparing modeled performance to measured performance. Measured weather, irradiance, and system performance data were collected on two systems over a one month period. Residual analysis is used to assess the models and to identify opportunities for model improvement. Large photovoltaic systems are typically developed as projects which supply electricity to a utility and are owned by independent power producers. Obtaining financing at favorable rates and attracting investors requires confidence in the projected energy yield from the plant. In this paper, various performance models for projecting annual energy yield from Concentrating Photovoltaic (CPV) systems are assessed by comparing measured system output to model predictions based on measured weather and irradiance data. The results are statistically analyzed to identify systematic error sources.

  15. Modeling of dislocations in a CDW junction: Interference of the CDW and normal carriers

    NASA Astrophysics Data System (ADS)

    Rojo Bravo, Alvaro; Yi, Tianyou; Kirova, Natasha; Brazovskii, Serguei

    2015-03-01

    We derive and study equations for dissipative transient processes in a constraint incommensurate charge density wave (CDW) with remnant pockets or a thermal population of normal carriers. The attention was paid to give the correct conservation of condensed and normal electrons, which was problematic at presence of moving dislocation cores if working within an intuitive Ginzburg-Landau like model. We performed a numeric modeling for stationary and transient states in a rectangular geometry when the voltage V or the normal current are applied across the conducting chains. We observe creation of an array of electronic vortices, the dislocations, at or close to the junction surface; their number increases stepwise with increasing V. The dislocation core strongly concentrates the normal carriers but the CDW phase distortions almost neutralize the total charge. At other regimes, the lines of the zero CDW amplitude flash across the sample working as phase slips. The studies were inspired by, and can be applied to experiments on mesa-junctions in NbSe3 and TaS3.

  16. A power balance model for converging and diverging flow junctions

    SciTech Connect

    Guffey, S.E. ); Fraser, D.A. )

    1989-01-01

    The authors propose that pressures across a junction of flows are best described by potential, kinetic, and dissipated (lost) power. It is demonstrated that differences in Bernoulli constants up- and downstream of junctions are not proportional to energy losses even in the trivial case of zero junction losses.

  17. The CORE Model to Student Organization Development.

    ERIC Educational Resources Information Center

    Conyne, Robert K.

    Student organization development (SOD) is an emerging technology for conducting intentional student development through positive alteration of student organizations. One model (CORE) for conceptualizing SOD is in use at the Student Development Center of the University of Cincinnati. The CORE model to SOD is comprised of three concentric rings, the…

  18. Models and methods for in vitro testing of hepatic gap junctional communication.

    PubMed

    Maes, Michaël; Crespo Yanguas, Sara; Willebrords, Joost; Vinken, Mathieu

    2015-12-25

    Inherent to their pivotal roles in controlling all aspects of the liver cell life cycle, hepatocellular gap junctions are frequently disrupted upon impairment of the homeostatic balance, as occurs during liver toxicity. Hepatic gap junctions, which are mainly built up by connexin32, are specifically targeted by tumor promoters and epigenetic carcinogens. This renders inhibition of gap junction functionality a suitable indicator for the in vitro detection of nongenotoxic hepatocarcinogenicity. The establishment of a reliable liver gap junction inhibition assay for routine in vitro testing purposes requires a cellular system in which gap junctions are expressed at an in vivo-like level as well as an appropriate technique to probe gap junction activity. Both these models and methods are discussed in the current paper, thereby focusing on connexin32-based gap junctions. PMID:26420514

  19. Models and methods for in vitro testing of hepatic gap junctional communication

    PubMed Central

    Willebrords, Joost; Vinken, Mathieu

    2015-01-01

    Inherent to their pivotal roles in controlling all aspects of the liver cell life cycle, hepatocellular gap junctions are frequently disrupted upon impairment of the homeostatic balance, as occurs during liver toxicity. Hepatic gap junctions, which are mainly built up by connexin32, are specifically targeted by tumor promoters and epigenetic carcinogens. This renders inhibition of gap junction functionality a suitable indicator for the in vitro detection of nongenotoxic hepatocarcinogenicity. The establishment of a reliable liver gap junction inhibition assay for routine in vitro testing purposes requires a cellular system in which gap junctions are expressed at an in vivo-like level as well as an appropriate technique to probe gap junction activity. Both these models and methods are discussed in the current paper, thereby focusing on connexin32-based gap junctions. PMID:26420514

  20. Core-Formation Models and Extinct Nuclides

    NASA Technical Reports Server (NTRS)

    Jacobsen, S. B.; Yin, Q.-Z.

    2001-01-01

    Zr and W isotope data are consistent with the Earth's core forming in a single event subsequent to about 113 Ma after the formation of the solar system. With continuous models of core formation the process can start early. Additional information is contained in the original extended abstract.

  1. Strains at the myotendinous junction predicted by a micromechanical model

    PubMed Central

    Sharafi, Bahar; Ames, Elizabeth G.; Holmes, Jeffrey W.; Blemker, Silvia S.

    2011-01-01

    The goal of this work was to create a finite element micromechanical model of the myotendinous junction (MTJ) to examine how the structure and mechanics of the MTJ affect the local micro-scale strains experienced by muscle fibers. We validated the model through comparisons with histological longitudinal sections of muscles fixed in slack and stretched positions. The model predicted deformations of the A-bands within the fiber near the MTJ that were similar to those measured from the histological sections. We then used the model to predict the dependence of local fiber strains on activation and the mechanical properties of the endomysium. The model predicted that peak micro-scale strains increase with activation and as the compliance of the endomysium decreases. Analysis of the models revealed that, in passive stretch, local fiber strains are governed by the difference of the mechanical properties between the fibers and the endomysium. In active stretch, strain distributions are governed by the difference in cross-sectional area along the length of the tapered region of the fiber near the MTJ. The endomysium provides passive resistance that balances the active forces and prevents the tapered region of the fiber from undergoing excessive strain. These model predictions lead to the following hypotheses: (i) the increased likelihood of injury during active lengthening of muscle fibers may be due to the increase in peak strain with activation and (ii) endomysium may play a role in protecting fibers from injury by reducing the strains within the fiber at the MTJ. PMID:21945569

  2. Molecular Motion of the Junction Points in Model Networks Prepared by Acyclic Triene Metathesis.

    PubMed

    da Silva, Lucas Caire; Bowers, Clifford R; Graf, Robert; Wagener, Kenneth B

    2016-03-01

    The junction dynamics in a selectively deuterated model polymer network containing junctions on every 21st chain carbon is studied by solid state (2) H echo NMR. Polymer networks are prepared via acyclic triene metathesis of deuteron-labeled symmetric trienes with deuteron probes precisely placed at the alpha carbon relative to the junction point. The effect of decreasing the cross-link density on the junction dynamics is studied by introduction of polybutadiene chains in-between junctions. The networks are characterized by swelling, gel content, and solid state (1) H MAS NMR. Line shape analysis of the (2) H quadrupolar echo spectra reveals that the degree of motion anisotropy and the distribution of motion correlation times depend on the cross-link density and structural heterogeneity of the polymer networks. A detailed model of the junction dynamics at different temperatures is proposed and explained in terms of the intermolecular cooperativity in densely-packed systems. PMID:26787457

  3. Mechanisms and Geochemical Models of Core Formation

    NASA Astrophysics Data System (ADS)

    David Rubie; Seth Andrew Jacobson

    2016-03-01

    The formation of the Earth's core is a consequence of planetary accretion and processes in the Earth's interior. The mechanical process of planetary differentiation is likely to occur in large, if not global, magma oceans created by the collisions of planetary embryos. Metal-silicate segregation in magma oceans occurs rapidly and efficiently unlike grain scale percolation according to laboratory experiments and calculations. Geochemical models of the core formation process as planetary accretion proceeds are becoming increasingly realistic. Single stage and continuous core formation models have evolved into multi-stage models that are couple to the output of dynamical models of the giant impact phase of planet formation. The models that are most successful in matching the chemical composition of the Earth's mantle, based on experimentally-derived element partition coefficients, show that the temperature and pressure of metal-silicate equilibration must increase as a function of time and mass accreted and so must the oxygen fugacity of the equilibrating material. The latter can occur if silicon partitions into the core and through the late delivery of oxidized material. Coupled dynamical accretion and multi-stage core formation models predict the evolving mantle and core compositions of all the terrestrial planets simultaneously and also place strong constraints on the bulk compositions and oxidation states of primitive bodies in the protoplanetary disk.

  4. Negative differential resistance in GeSi core-shell transport junctions: the role of local sp(2) hybridization.

    PubMed

    Liu, Nuo; Zhang, Lei; Chen, Xiaobin; Kong, Xianghua; Zheng, Xiaohong; Guo, Hong

    2016-09-21

    We report a theoretical investigation of nonlinear quantum transport properties of Au/GeSi/Au junctions. For GeSi semiconducting core-shell structures brought into contact with Au electrodes, a very unusual behavior is that the tunneling transport is on-resonance right at equilibrium. This resonance is not due to the alignment of a quantum level in GeSi to the electrochemical potential of Au, but due to the alignment of very sharp DOS features - hot spots, localized at the two Au/GeSi interfaces of the device. An applied bias voltage shifts the hot spots relative to each other which gives rise to substantial negative differential resistance (NDR). The hot spots localized at the two interfaces were found to be due to the unbonded pz orbital of a sp(2) hybridized interface Si atom which is surrounded by three non-sp(2) hybridized neighbors. The mechanism of inducing hot spots and NDR by a local structure unit is not limited to the GeSi. The results suggest an interesting scheme for constructing NDR devices by orbital manipulation, to be more explicit, for example, by designing local structural units having unbonded orbitals at the interfaces between electrodes and the central region of the transport junction. PMID:27546305

  5. Molecular Models for Conductance in Junctions and Electrochemical Electron Transfer

    NASA Astrophysics Data System (ADS)

    Mazinani, Shobeir Khezr Seddigh

    This thesis develops molecular models for electron transport in molecular junctions and intra-molecular electron transfer. The goal is to identify molecular descriptors that afford a substantial simplification of these electronic processes. First, the connection between static molecular polarizability and the molecular conductance is examined. A correlation emerges whereby the measured conductance of a tunneling junction decreases as a function of the calculated molecular polarizability for several systems, a result consistent with the idea of a molecule as a polarizable dielectric. A model based on a macroscopic extension of the Clausius-Mossotti equation to the molecular domain and Simmon's tunneling model is developed to explain this correlation. Despite the simplicity of the theory, it paves the way for further experimental, conceptual and theoretical developments in the use of molecular descriptors to describe both conductance and electron transfer. Second, the conductance of several biologically relevant, weakly bonded, hydrogen-bonded systems is systematically investigated. While there is no correlation between hydrogen bond strength and conductance, the results indicate a relation between the conductance and atomic polarizability of the hydrogen bond acceptor atom. The relevance of these results to electron transfer in biological systems is discussed. Hydrogen production and oxidation using catalysts inspired by hydrogenases provides a more sustainable alternative to the use of precious metals. To understand electrochemical and spectroscopic properties of a collection of Fe and Ni mimics of hydrogenases, high-level density functional theory calculations are described. The results, based on a detailed analysis of the energies, charges and molecular orbitals of these metal complexes, indicate the importance of geometric constraints imposed by the ligand on molecular properties such as acidity and electrocatalytic activity. Based on model calculations of

  6. Three-dimensional models of conventional and vertical junction laser-photovoltaic energy converters

    NASA Technical Reports Server (NTRS)

    Heinbockel, John H.; Walker, Gilbert H.

    1988-01-01

    Three-dimensional models of both conventional planar junction and vertical junction photovoltaic energy converters have been constructed. The models are a set of linear partial differential equations and take into account many photoconverter design parameters. The model is applied to Si photoconverters; however, the model may be used with other semiconductors. When used with a Nd laser, the conversion efficiency of the Si vertical junction photoconverter is 47 percent, whereas the efficiency for the conventional planar Si photoconverter is only 17 percent. A parametric study of the Si vertical junction photoconverter is then done in order to describe the optimum converter for use with the 1.06-micron Nd laser. The efficiency of this optimized vertical junction converter is 44 percent at 1 kW/sq cm.

  7. Chemical Models of Star-Forming Cores

    NASA Astrophysics Data System (ADS)

    Aikawa, Y.

    2013-10-01

    We review chemical models of low-mass star forming cores including our own work. Chemistry in molecular clouds are not in equilibrium. Molecular abundances in star forming cores change not only with physical conditions in cores but also with time. In prestellar cores, temperature stays almost constant ˜ 10 K, while the gas density increases as the core collapses. Three chemical phenomena are observed in this cold phase: molecular depletion, chemical fractionation, and deuterium enrichment. They are reproduced by chemical models combined with isothermal gravitational collapse. The collapse timescale of prestellar cores depends on the initial ratios of thermal, turbulent and magnetic pressure to gravitational energy. Since the chemical timescales, such as adsorption timescale of gas particle onto grains, are comparable to the collapse timescale, molecular abundances in cores should vary depending on the collapse timescale. Observations found that molecular abundances in some cores deviate from those in other cores, in spite of their similar central densities; it could originate in the pressure to gravity ratio in the cores. As the core contraction proceeds, compressional heating eventually overwhelms radiative cooling, and the core starts to warm up. Temperature of the infalling gas rises, as it approaches the central region. Grain-surface reactions of adsorbed molecules occur in this warm-up phase, as well as in prestellar phase. Hydrogenation is efficient at T ≤ 20 K, whereas radicals can migrate on grain surface and react with each other to form complex organic molecules (COMs) at T ≥ 30 K. Grain-surface species are sublimated to the gas phase and re-start gas-phase reactions; e.g. unsaturated carbon chains are formed from sublimated methane. Our model calculation predicts that COMs increases as the warm region extends outwards and the abundances of unsaturated carbon chains depend on the gas density in the CH4 sublimation zone. Recent detection of COMs in

  8. Quantum interference in thermoelectric molecular junctions: A toy model perspective

    SciTech Connect

    Nozaki, Daijiro E-mail: research@nano.tu-dresden.de; Avdoshenko, Stas M.; Sevinçli, Hâldun; Cuniberti, Gianaurelio

    2014-08-21

    Quantum interference (QI) phenomena between electronic states in molecular circuits offer a new opportunity to design new types of molecular devices such as molecular sensors, interferometers, and thermoelectric devices. Controlling the QI effect is a key challenge for such applications. For the development of single molecular devices employing QI effects, a systematic study of the relationship between electronic structure and the quantum interference is needed. In order to uncover the essential topological requirements for the appearance of QI effects and the relationship between the QI-affected line shape of the transmission spectra and the electronic structures, we consider a homogeneous toy model where all on-site energies are identical and model four types of molecular junctions due to their topological connectivities. We systematically analyze their transmission spectra, density of states, and thermoelectric properties. Even without the degree of freedom for on-site energies an asymmetric Fano peak could be realized in the homogeneous systems with the cyclic configuration. We also calculate the thermoelectric properties of the model systems with and without fluctuation of on-site energies. Even under the fluctuation of the on-site energies, the finite thermoelectrics are preserved for the Fano resonance, thus cyclic configuration is promising for thermoelectric applications. This result also suggests the possibility to detect the cyclic configuration in the homogeneous systems and the presence of the QI features from thermoelectric measurements.

  9. Quantum interference in thermoelectric molecular junctions: A toy model perspective

    NASA Astrophysics Data System (ADS)

    Nozaki, Daijiro; Avdoshenko, Stas M.; Sevinçli, Hâldun; Cuniberti, Gianaurelio

    2014-08-01

    Quantum interference (QI) phenomena between electronic states in molecular circuits offer a new opportunity to design new types of molecular devices such as molecular sensors, interferometers, and thermoelectric devices. Controlling the QI effect is a key challenge for such applications. For the development of single molecular devices employing QI effects, a systematic study of the relationship between electronic structure and the quantum interference is needed. In order to uncover the essential topological requirements for the appearance of QI effects and the relationship between the QI-affected line shape of the transmission spectra and the electronic structures, we consider a homogeneous toy model where all on-site energies are identical and model four types of molecular junctions due to their topological connectivities. We systematically analyze their transmission spectra, density of states, and thermoelectric properties. Even without the degree of freedom for on-site energies an asymmetric Fano peak could be realized in the homogeneous systems with the cyclic configuration. We also calculate the thermoelectric properties of the model systems with and without fluctuation of on-site energies. Even under the fluctuation of the on-site energies, the finite thermoelectrics are preserved for the Fano resonance, thus cyclic configuration is promising for thermoelectric applications. This result also suggests the possibility to detect the cyclic configuration in the homogeneous systems and the presence of the QI features from thermoelectric measurements.

  10. Emergent Central Pattern Generator Behavior in Gap-Junction-Coupled Hodgkin-Huxley Style Neuron Model

    PubMed Central

    Memelli, Heraldo; Solomon, Irene C.

    2012-01-01

    Most models of central pattern generators (CPGs) involve two distinct nuclei mutually inhibiting one another via synapses. Here, we present a single-nucleus model of biologically realistic Hodgkin-Huxley neurons with random gap junction coupling. Despite no explicit division of neurons into two groups, we observe a spontaneous division of neurons into two distinct firing groups. In addition, we also demonstrate this phenomenon in a simplified version of the model, highlighting the importance of afterhyperpolarization currents (IAHP) to CPGs utilizing gap junction coupling. The properties of these CPGs also appear sensitive to gap junction conductance, probability of gap junction coupling between cells, topology of gap junction coupling, and, to a lesser extent, input current into our simulated nucleus. PMID:23365558

  11. Congenital ureteropelvic junction obstruction: human disease and animal models

    PubMed Central

    Klein, Julie; Gonzalez, Julien; Miravete, Mathieu; Caubet, Cécile; Chaaya, Rana; Decramer, Stéphane; Bandin, Flavio; Bascands, Jean-Loup; Buffin-Meyer, Bénédicte; Schanstra, Joost P

    2011-01-01

    Ureteropelvic junction (UPJ) obstruction is the most frequently observed cause of obstructive nephropathy in children. Neonatal and foetal animal models have been developed that mimic closely what is observed in human disease. The purpose of this review is to discuss how obstructive nephropathy alters kidney histology and function and describe the molecular mechanisms involved in the progression of the lesions, including inflammation, proliferation/apoptosis, renin–angiotensin system activation and fibrosis, based on both human and animal data. Also we propose that during obstructive nephropathy, hydrodynamic modifications are early inducers of the tubular lesions, which are potentially at the origin of the pathology. Finally, an important observation in animal models is that relief of obstruction during kidney development has important effects on renal function later in adult life. A major short-coming is the absence of data on the impact of UPJ obstruction on long-term adult renal function to elucidate whether these animal data are also valid in humans. PMID:20681980

  12. Dynamic compact model of thermally assisted switching magnetic tunnel junctions

    NASA Astrophysics Data System (ADS)

    El Baraji, M.; Javerliac, V.; Guo, W.; Prenat, G.; Dieny, B.

    2009-12-01

    The general purpose of spin electronics is to take advantage of the electron's spin in addition to its electrical charge to build innovative electronic devices. These devices combine magnetic materials which are used as spin polarizer or analyzer together with semiconductors or insulators, resulting in innovative hybrid CMOS/magnetic (Complementary MOS) architectures. In particular, magnetic tunnel junctions (MTJs) can be used for the design of magnetic random access memories [S. Tehrani, Proc. IEEE 91, 703 (2003)], magnetic field programmable gate arrays [Y. Guillement, International Journal of Reconfigurable Computing, 2008], low-power application specific integrated circuits [S. Matsunaga, Appl. Phys. Express 1, 091301 (2008)], and rf oscillators. The thermally assisted switching (TAS) technology requires heating the MTJ before writing it by means of an external field. It reduces the overall power consumption, solves the data writing selectivity issues, and improves the thermal stability of the written information for high density applications. The design of hybrid architectures requires a MTJ compact model, which can be used in standard electrical simulators of the industry. As a result, complete simulations of CMOS/MTJ hybrid circuits can be performed before experimental realization and testing. This article presents a highly accurate model of the MTJ based on the TAS technology. It is compatible with the Spectre electrical simulator of Cadence design suite.

  13. Synaptic dynamics at the neuromuscular junction: mechanisms and models.

    PubMed

    Van Essen, D C; Gordon, H; Soha, J M; Fraser, S E

    1990-01-01

    During development, the neuromuscular junction passes through a stage of extensive polyinnervation followed by a period of wholesale synapse elimination. In this report we discuss mechanisms and interactions that could mediate many of the key aspects of these important developmental events. Our emphasis is on (1) establishing an overall conceptual framework within which the role of many distinct cellular interactions and molecular factors can be evaluated, and (2) generating computer simulations that systematically test the adequacy of different models in accounting for a wide range of biological data. Our analysis indicates that several relatively simple mechanisms are each capable of explaining a variety of experimental observations. On the other hand, no one mechanism can account for the full spectrum of experimental results. Thus, it is important to consider models that are based on interactions among multiple mechanisms. A potentially powerful combination is one based on (1) a scaffold within the basal lamina or in the postsynaptic membrane which is induced by nerve terminals and which serves to stabilize terminals by a positive feedback mechanism; (2) a sprouting factor whose release by muscle fibers is down-regulated by activity and perhaps other factors; and (3) an intrinsic tendency of motor neurons to withdraw some connections while allowing others to grow. PMID:2181065

  14. Modeling in the Common Core State Standards

    ERIC Educational Resources Information Center

    Tam, Kai Chung

    2011-01-01

    The inclusion of modeling and applications into the mathematics curriculum has proven to be a challenging task over the last fifty years. The Common Core State Standards (CCSS) has made mathematical modeling both one of its Standards for Mathematical Practice and one of its Conceptual Categories. This article discusses the need for mathematical…

  15. Temperature Characteristics Analysis of Triple-Junction Solar Cell under Concentrated Conditions using Spice Diode Model

    NASA Astrophysics Data System (ADS)

    Sakurada, Yuya; Ota, Yasuyuki; Nishioka, Kensuke

    2011-12-01

    Using spice diode model, the temperature characteristics of an InGaP/InGaAs/Ge triple-junction solar cell under concentrated light conditions were analyzed in detail. The current-voltage (I-V) characteristics of the single-junction solar cells (InGaP, InGaAs, and Ge solar cells) were measured at various temperatures. From dark I-V characteristics of each single-junction solar cell, the diode parameters and temperature exponents were extracted. The extracted diode parameters and temperature exponents were applied to the equivalent circuit model for the triple-junction solar cell, and the solar cell performance was calculated with considering the temperature characteristics of series resistance. There was good agreement between the measured and calculated I-V characteristics of the triple-junction solar cell at various temperatures under concentrated light conditions.

  16. Bipolar junction transistor models for circuit simulation of cosmic-ray-induced soft errors

    NASA Astrophysics Data System (ADS)

    Benumof, R.; Zoutendyk, J.

    1984-11-01

    This paper examines bipolar junction transistor models suitable for calculating the effects of large excursions of some of the variables determining the operation of a transistor. Both the Ebers-Moll and Gummel-Poon models are studied, and the junction and diffusion capacitances are evaluated on the basis of the latter model. The most interesting result of this analysis is that a bipolar junction transistor when struck by a cosmic particle may cause a single event upset in an electronic circuit if the transistor is operated at a low forward base-emitter bias.

  17. Bipolar junction transistor models for circuit simulation of cosmic-ray-induced soft errors

    NASA Technical Reports Server (NTRS)

    Benumof, R.; Zoutendyk, J.

    1984-01-01

    This paper examines bipolar junction transistor models suitable for calculating the effects of large excursions of some of the variables determining the operation of a transistor. Both the Ebers-Moll and Gummel-Poon models are studied, and the junction and diffusion capacitances are evaluated on the basis of the latter model. The most interesting result of this analysis is that a bipolar junction transistor when struck by a cosmic particle may cause a single event upset in an electronic circuit if the transistor is operated at a low forward base-emitter bias.

  18. Geodynamo Modeling of Core-Mantle Interactions

    NASA Technical Reports Server (NTRS)

    Kuang, Wei-Jia; Chao, Benjamin F.; Smith, David E. (Technical Monitor)

    2001-01-01

    Angular momentum exchange between the Earth's mantle and core influences the Earth's rotation on time scales of decades and longer, in particular in the length of day (LOD) which have been measured with progressively increasing accuracy for the last two centuries. There are four possible coupling mechanisms for transferring the axial angular momentum across the core-mantle boundary (CMB): viscous, magnetic, topography, and gravitational torques. Here we use our scalable, modularized, fully dynamic geodynamo model for the core to assess the importance of these torques. This numerical model, as an extension of the Kuang-Bloxham model that has successfully simulated the generation of the Earth's magnetic field, is used to obtain numerical results in various physical conditions in terms of specific parameterization consistent with the dynamical processes in the fluid outer core. The results show that depending on the electrical conductivity of the lower mantle and the amplitude of the boundary topography at CMB, both magnetic and topographic couplings can contribute significantly to the angular momentum exchange. This implies that the core-mantle interactions are far more complex than has been assumed and that there is unlikely a single dominant coupling mechanism for the observed decadal LOD variation.

  19. Model For Dense Molecular Cloud Cores

    NASA Technical Reports Server (NTRS)

    Doty, Steven D.; Neufeld, David A.

    1997-01-01

    We present a detailed theoretical model for the thermal balance, chemistry, and radiative transfer within quiescent dense molecular cloud cores that contain a central protostar. In the interior of such cores, we expect the dust and gas temperatures to be well coupled, while in the outer regions CO rotational emissions dominate the gas cooling and the predicted gas temperature lies significantly below the dust temperature. Large spatial variations in the gas temperature are expected to affect the gas phase chemistry dramatically; in particular, the predicted water abundance varies by more than a factor of 1000 within cloud cores that contain luminous protostars. Based upon our predictions for the thermal and chemical structure of cloud cores, we have constructed self-consistent radiative transfer models to compute the line strengths and line profiles for transitions of (12)CO, (13)CO, C(18)O, ortho- and para-H2(16)O, ortho- and para-H2(18)O, and O I. We carried out a general parameter study to determine the dependence of the model predictions upon the parameters assumed for the source. We expect many of the far-infrared and submillimeter rotational transitions of water to be detectable either in emission or absorption with the use of the Infrared Space Observatory (ISO) and the Submillimeter Wave Astronomy Satellite. Quiescent, radiatively heated hot cores are expected to show low-gain maser emission in the 183 GHz 3(sub 13)-2(sub 20) water line, such as has been observed toward several hot core regions using ground-based telescopes. We predict the (3)P(sub l) - (3)P(sub 2) fine-structure transition of atomic oxygen near 63 micron to be in strong absorption against the continuum for many sources. Our model can also account successfully for recent ISO observations of absorption in rovibrational transitions of water toward the source AFGL 2591.

  20. Enhanced Core Noise Modeling for Turbofan Engines

    NASA Technical Reports Server (NTRS)

    Stone, James R.; Krejsa, Eugene A.; Clark, Bruce J.

    2011-01-01

    This report describes work performed by MTC Technologies (MTCT) for NASA Glenn Research Center (GRC) under Contract NAS3-00178, Task Order No. 15. MTCT previously developed a first-generation empirical model that correlates the core/combustion noise of four GE engines, the CF6, CF34, CFM56, and GE90 for General Electric (GE) under Contract No. 200-1X-14W53048, in support of GRC Contract NAS3-01135. MTCT has demonstrated in earlier noise modeling efforts that the improvement of predictive modeling is greatly enhanced by an iterative approach, so in support of NASA's Quiet Aircraft Technology Project, GRC sponsored this effort to improve the model. Since the noise data available for correlation are total engine noise spectra, it is total engine noise that must be predicted. Since the scope of this effort was not sufficient to explore fan and turbine noise, the most meaningful comparisons must be restricted to frequencies below the blade passage frequency. Below the blade passage frequency and at relatively high power settings jet noise is expected to be the dominant source, and comparisons are shown that demonstrate the accuracy of the jet noise model recently developed by MTCT for NASA under Contract NAS3-00178, Task Order No. 10. At lower power settings the core noise became most apparent, and these data corrected for the contribution of jet noise were then used to establish the characteristics of core noise. There is clearly more than one spectral range where core noise is evident, so the spectral approach developed by von Glahn and Krejsa in 1982 wherein four spectral regions overlap, was used in the GE effort. Further analysis indicates that the two higher frequency components, which are often somewhat masked by turbomachinery noise, can be treated as one component, and it is on that basis that the current model is formulated. The frequency scaling relationships are improved and are now based on combustor and core nozzle geometries. In conjunction with the Task

  1. Experimental testing and modeling analysis of solute mixing at water distribution pipe junctions.

    PubMed

    Shao, Yu; Jeffrey Yang, Y; Jiang, Lijie; Yu, Tingchao; Shen, Cheng

    2014-06-01

    Flow dynamics at a pipe junction controls particle trajectories, solute mixing and concentrations in downstream pipes. The effect can lead to different outcomes of water quality modeling and, hence, drinking water management in a distribution network. Here we have investigated solute mixing behavior in pipe junctions of five hydraulic types, for which flow distribution factors and analytical equations for network modeling are proposed. First, based on experiments, the degree of mixing at a cross is found to be a function of flow momentum ratio that defines a junction flow distribution pattern and the degree of departure from complete mixing. Corresponding analytical solutions are also validated using computational-fluid-dynamics (CFD) simulations. Second, the analytical mixing model is further extended to double-Tee junctions. Correspondingly the flow distribution factor is modified to account for hydraulic departure from a cross configuration. For a double-Tee(A) junction, CFD simulations show that the solute mixing depends on flow momentum ratio and connection pipe length, whereas the mixing at double-Tee(B) is well represented by two independent single-Tee junctions with a potential water stagnation zone in between. Notably, double-Tee junctions differ significantly from a cross in solute mixing and transport. However, it is noted that these pipe connections are widely, but incorrectly, simplified as cross junctions of assumed complete solute mixing in network skeletonization and water quality modeling. For the studied pipe junction types, analytical solutions are proposed to characterize the incomplete mixing and hence may allow better water quality simulation in a distribution network. PMID:24675269

  2. Characterizing and Modeling Ferrite-Core Probes

    NASA Astrophysics Data System (ADS)

    Sabbagh, Harold A.; Murphy, R. Kim; Sabbagh, Elias H.; Aldrin, John C.

    2010-02-01

    In this paper, we accurately and carefully characterize a ferrite-core probe that is widely used for aircraft inspections. The characterization starts with the development of a model that can be executed using the proprietary volume-integral code, VIC-3D©, and then the model is fitted to measured multifrequency impedance data taken with the probe in freespace and over samples of a titanium alloy and aluminum. Excellent results are achieved, and will be discussed.

  3. Mucin-type core 1 glycans regulate the localization of neuromuscular junctions and establishment of muscle cell architecture in Drosophila.

    PubMed

    Itoh, Kazuyoshi; Akimoto, Yoshihiro; Fuwa, Takashi J; Sato, Chikara; Komatsu, Akira; Nishihara, Shoko

    2016-04-01

    T antigen (Galβ1-3GalNAcα1-Ser/Thr), a core 1 mucin-type O-glycan structure, is synthesized by Drosophila core 1 β1,3-galactosyltrasferase 1 (dC1GalT1) and is expressed in various tissues. We previously reported that dC1GalT1 synthesizes T antigen expressed in hemocytes, lymph glands, and the central nervous system (CNS) and that dC1GalT1 mutant larvae display decreased numbers of circulating hemocytes and excessive differentiation of hematopoietic stem cells in lymph glands. dC1GalT1 mutant larvae have also been shown to have morphological defects in the CNS. However, the functions of T antigen in other tissues remain largely unknown. In this study, we found that glycans contributed to the localization of neuromuscular junction (NMJ) boutons. In dC1GalT1 mutant larvae, NMJs were ectopically formed in the cleft between muscles 6 and 7 and connected with these two muscles. dC1GalT1 synthesized T antigen, which was expressed at NMJs. In addition, we determined the function of mucin-type O-glycans in muscle cells. In dC1GalT1 mutant muscles, myofibers and basement membranes were disorganized. Moreover, ultrastructural defects in NMJs and accumulation of large endosome-like structures within both NMJ boutons and muscle cells were observed in dC1GalT1 mutants. Taken together, these results demonstrated that mucin-type O-glycans synthesized by dC1GalT1 were involved in the localization of NMJ boutons, synaptogenesis of NMJs, establishment of muscle cell architecture, and endocytosis. PMID:26896591

  4. Formation and stability of ridge-ridge-ridge triple junctions in rheologically realistic lithosphere model

    NASA Astrophysics Data System (ADS)

    Gerya, Taras; Burov, Evgueni

    2015-04-01

    -branch junction formation and evolution by using high-resolution 3D numerical mechanical experiments that take into account realistic thermo-rheological structure and rheology of the lithosphere. We find that two major types of quadruple and triple junctions are formed under bi-directional or multidirectional far-field stress field: (i) plate rifting junctions are formed by the initial plate fragmentation and can be subsequently re-arranged into (ii) oceanic spreading junctions controlled by the new oceanic crust accretion. In particular, we document initial formation and destabilization of quadruple R-R-R-R junctions as initial plate rifting structures under bi-directional extension. In most cases, quadruple plate rifting junctions rapidly (typically within 1-2 Myr) evolve towards formation of two diverging triple oceanic spreading junctions connected by a linear spreading center lengthening with time. This configuration remains stable over long time scales. However, under certain conditions, quadruple junctions may also remain relatively stable. Asymmetric stretching results in various configurations, for example formation of "T-junctions" with trans-extensional components and combination of fast and slow spreading ridges. Combined with plume impingement, this scenario evolves in realistic patterns closely resembling observed plate dynamics. In particular, opening of the Red Sea and of the Afar rift system find a logical explanation within a single model. Numerical experiments also suggest that several existing oceanic spreading junctions form as the result of plate motions rearrangements after which only one of two plates spreading along the ridge become subjected to bi-directional spreading.

  5. Gibbons-Hawking boundary terms and junction conditions for higher-order brane gravity models

    SciTech Connect

    Balcerzak, Adam; Dabrowski, Mariusz P. E-mail: mpdabfz@wmf.univ.szczecin.pl

    2009-01-15

    We derive the most general junction conditions for the fourth-order brane gravity constructed of arbitrary functions of curvature invariants. We reduce these fourth-order theories to second order theories at the expense of introducing new scalar and tensor fields - the scalaron and the tensoron. In order to obtain junction conditions we apply the method of generalized Gibbons-Hawking boundary terms which are appended to the appropriate actions. After assuming the continuity of the scalaron and the tensoron on the brane, we recover junction conditions for such general brane universe models previously obtained by different methods. The derived junction conditions can serve studying the cosmological implications of the higher-order brane gravity models.

  6. Conformational model of the Holliday junction transition deduced from molecular dynamics simulations

    PubMed Central

    Yu, Jin; Ha, Taekjip; Schulten, Klaus

    2004-01-01

    Homologous recombination plays a key role in the restart of stalled replication forks and in the generation of genetic diversity. During this process, two homologous DNA molecules undergo strand exchange to form a four-way DNA (Holliday) junction. In the presence of metal ions, the Holliday junction folds into the stacked-X structure that has two alternative conformers. Experiments have revealed the spontaneous transitions between these conformers, but their detailed pathways are not known. Here, we report a series of molecular dynamics simulations of the Holliday junction at physiological and elevated (400 K) temperatures. The simulations reveal new tetrahedral intermediates and suggest a schematic framework for conformer transitions. The tetrahedral intermediates bear resemblance to the junction conformation in complex with a junction-resolving enzyme, T7 endonuclease I, and indeed, one intermediate forms a stable complex with the enzyme as demonstrated in one simulation. We also describe free energy minima for various states of the Holliday junction system, which arise during conformer transitions. The results show that magnesium ions stabilize the stacked-X form and destabilize the open and tetrahedral intermediates. Overall, our study provides a detailed dynamic model of the Holliday junction undergoing a conformer transition. PMID:15613597

  7. Josephson junction devices: Model quantum mechanical systems and medical applications

    NASA Astrophysics Data System (ADS)

    Chen, Josephine

    In this dissertation, three experiments using Josephson junction devices are described. In Part I, the effect of dissipation on tunneling between charge states in a superconducting single-electron transistor (sSET) was studied. The sSET was fabricated on top of a semi-conductor heterostructure with a two-dimensional electron gas (2DEG) imbedded beneath the surface. The 2DEG acted as a dissipative ground plane. The sheet resistance of the 2DEG could be varied in situ by applying a large voltage to a gate on the back of the substrate. The zero-bias conductance of the sSET was observed to increase with increasing temperature and 2DEG resistance. Some qualitative but not quantitative agreement was found with theoretical calculations of the functional dependence of the conductance on temperature and 2DEG resistance. Part II describes a series of experiments performed on magnesium diboride point-contact junctions. The pressure between the MgB2 tip and base pieces could be adjusted to form junctions with different characteristics. With light pressure applied between the two pieces, quasiparticle tunneling in superconductor-insulator-superconductor junctions was measured. From these data, a superconducting gap of approximately 2 meV and a critical temperature of 29 K were estimated. Increasing the pressure between the MgB2 pieces formed junctions with superconductor-normal metal-superconductor characteristics. We used these junctions to form MgB2 superconducting quantum interference devices (SQUIDS). Noise levels as low as 35 fT/Hz1/2 and 4 muphi 0/Hz1/2 at 1 kHz were measured. In Part III, we used a SQUID-based instrument to acquire magnetocardiograms (MCG), the magnetic field signal measured from the human heart. We measured 51 healthy volunteers and 11 cardiac patients both at rest and after treadmill exercise. We found age and sex related differences in the MCG of the healthy volunteers that suggest that these factors should be considered when evaluating the MCG for

  8. Dissipation in a Simple Model of a Topological Josephson Junction

    NASA Astrophysics Data System (ADS)

    Matthews, Paul; Ribeiro, Pedro; García-García, Antonio M.

    2014-06-01

    The topological features of low-dimensional superconductors have created a lot of excitement recently because of their broad range of applications in quantum information and their potential to reveal novel phases of quantum matter. A potential problem for practical applications is the presence of phase slips that break phase coherence. Dissipation in nontopological superconductors suppresses phase slips and can restore long-range order. Here, we investigate the role of dissipation in a topological Josephson junction. We show that the combined effects of topology and dissipation keep phase and antiphase slips strongly correlated so that the device is superconducting even under conditions where a nontopological device would be resistive. The resistive transition occurs at a critical value of the dissipation that is 4 times smaller than that expected for a conventional Josephson junction. We propose that this difference could be employed as a robust experimental signature of topological superconductivity.

  9. Dissipation in a simple model of a topological Josephson junction.

    PubMed

    Matthews, Paul; Ribeiro, Pedro; García-García, Antonio M

    2014-06-20

    The topological features of low-dimensional superconductors have created a lot of excitement recently because of their broad range of applications in quantum information and their potential to reveal novel phases of quantum matter. A potential problem for practical applications is the presence of phase slips that break phase coherence. Dissipation in nontopological superconductors suppresses phase slips and can restore long-range order. Here, we investigate the role of dissipation in a topological Josephson junction. We show that the combined effects of topology and dissipation keep phase and antiphase slips strongly correlated so that the device is superconducting even under conditions where a nontopological device would be resistive. The resistive transition occurs at a critical value of the dissipation that is 4 times smaller than that expected for a conventional Josephson junction. We propose that this difference could be employed as a robust experimental signature of topological superconductivity. PMID:24996102

  10. Modeling of Memristive and Memcapacitive Behaviors in Metal-Oxide Junctions

    PubMed Central

    Mohamed, M. G. A.; Kim, HyungWon; Cho, Tae-Won

    2015-01-01

    Memristive behavior has been clearly addressed through growth and shrinkage of thin filaments in metal-oxide junctions. Capacitance change has also been observed, raising the possibility of using them as memcapacitors. Therefore, this paper proves that metal-oxide junctions can behave as a memcapacitor element by analyzing its characteristics and modeling its memristive and memcapacitive behaviors. We develop two behavioral modeling techniques: charge-dependent memcapacitor model and voltage-dependent memcapacitor model. A new physical model for metal-oxide junctions is presented based on conducting filaments variations, and its effect on device capacitance and resistance. In this model, we apply the exponential nature of growth and shrinkage of thin filaments and use Simmons' tunneling equation to calculate the tunneling current. Simulation results show how the variations of practical device parameters can change the device behavior. They clarify the basic conditions for building a memcapacitor device with negligible change in resistance. PMID:25705717

  11. Osmotic forces and gap junctions in spreading depression: a computational model

    NASA Technical Reports Server (NTRS)

    Shapiro, B. E.

    2001-01-01

    In a computational model of spreading depression (SD), ionic movement through a neuronal syncytium of cells connected by gap junctions is described electrodiffusively. Simulations predict that SD will not occur unless cells are allowed to expand in response to osmotic pressure gradients and K+ is allowed to move through gap junctions. SD waves of [K+]out approximately 25 to approximately 60 mM moving at approximately 2 to approximately 18 mm/min are predicted over the range of parametric values reported in gray matter, with extracellular space decreasing up to approximately 50%. Predicted waveform shape is qualitatively similar to laboratory reports. The delayed-rectifier, NMDA, BK, and Na+ currents are predicted to facilitate SD, while SK and A-type K+ currents and glial activity impede SD. These predictions are consonant with recent findings that gap junction poisons block SD and support the theories that cytosolic diffusion via gap junctions and osmotic forces are important mechanisms underlying SD.

  12. Modelling the effect of gap junctions on tissue-level cardiac electrophysiology.

    PubMed

    Bruce, Doug; Pathmanathan, Pras; Whiteley, Jonathan P

    2014-02-01

    When modelling tissue-level cardiac electrophysiology, a continuum approximation to the discrete cell-level equations, known as the bidomain equations, is often used to maintain computational tractability. Analysing the derivation of the bidomain equations allows us to investigate how microstructure, in particular gap junctions that electrically connect cells, affect tissue-level conductivity properties. Using a one-dimensional cable model, we derive a modified form of the bidomain equations that take gap junctions into account, and compare results of simulations using both the discrete and continuum models, finding that the underlying conduction velocity of the action potential ceases to match up between models when gap junctions are introduced at physiologically realistic coupling levels. We show that this effect is magnified by: (i) modelling gap junctions with reduced conductivity; (ii) increasing the conductance of the fast sodium channel; and (iii) an increase in myocyte length. From this, we conclude that the conduction velocity arising from the bidomain equations may not be an accurate representation of the underlying discrete system. In particular, the bidomain equations are less likely to be valid when modelling certain diseased states whose symptoms include a reduction in gap junction coupling or an increase in myocyte length. PMID:24338526

  13. From cusps to cores: a stochastic model

    NASA Astrophysics Data System (ADS)

    El-Zant, Amr A.; Freundlich, Jonathan; Combes, Françoise

    2016-09-01

    The cold dark matter model of structure formation faces apparent problems on galactic scales. Several threads point to excessive halo concentration, including central densities that rise too steeply with decreasing radius. Yet, random fluctuations in the gaseous component can `heat' the centres of haloes, decreasing their densities. We present a theoretical model deriving this effect from first principles: stochastic variations in the gas density are converted into potential fluctuations that act on the dark matter; the associated force correlation function is calculated and the corresponding stochastic equation solved. Assuming a power-law spectrum of fluctuations with maximal and minimal cutoff scales, we derive the velocity dispersion imparted to the halo particles and the relevant relaxation time. We further perform numerical simulations, with fluctuations realized as a Gaussian random field, which confirm the formation of a core within a time-scale comparable to that derived analytically. Non-radial collective modes enhance the energy transport process that erases the cusp, though the parametrizations of the analytical model persist. In our model, the dominant contribution to the dynamical coupling driving the cusp-core transformation comes from the largest scale fluctuations. Yet, the efficiency of the transformation is independent of the value of the largest scale and depends weakly (linearly) on the power-law exponent; it effectively depends on two parameters: the gas mass fraction and the normalization of the power spectrum. This suggests that cusp-core transformations observed in hydrodynamic simulations of galaxy formation may be understood and parametrized in simple terms, the physical and numerical complexities of the various implementations notwithstanding.

  14. Modeling and theoretical efficiency of a silicon nanowire based thermoelectric junction with area enhancement

    SciTech Connect

    Seong, M; Sadhu, JS; Ma, J; Ghossoub, MG; Sinha, S

    2012-06-15

    Recent experimental work suggests that individual silicon nanowires with rough surfaces possess a thermoelectric figure of merit as high as 0.6 near room temperature. This paper addresses the possibility of using an array of such nanowires in a thermoelectric junction for generation. Employing a model of frequency dependent phonon boundary scattering, we estimate the effective thermal conductivity of the array and investigate heat flow through the junction. We show that charge transport is largely unaffected by the roughness scales considered. Enhancing the area for heat exchange at an individual 200 mu m x 200 mu m p-n junction yields significant temperature differences across the junction leading to power >0.6 mW and efficiency >1.5% for a junction with effective thermal conductivity <5 W/mK, when the source and sink are at 450 K and 300 K, respectively. We show that relatively short nanowires of similar to 50 mu m length are sufficient for obtaining peak power and reasonable efficiency. This substantially reduces the challenge of engineering low resistivity electrical contacts that critically affect power and efficiency. This paper provides insight into how fundamental transport in relation to bulk heat transfer and charge transport, affects the performance of thermoelectric junctions based on nanostructured materials. (C) 2012 American Institute of Physics. [http://dx.doi.org/10.1063/1.4728189

  15. Mathematical modeling of intrinsic Josephson junctions with capacitive and inductive couplings

    NASA Astrophysics Data System (ADS)

    Rahmonov, I. R.; Shukrinov, Yu M.; Zemlyanaya, E. V.; Sarhadov, I.; Andreeva, O.

    2012-11-01

    We investigate the current voltage characteristics (CVC) of intrinsic Josephson junctions (IJJ) with two types of couplings between junctions: capacitive and inductive. The IJJ model is described by a system of coupled sine-Gordon equations which is solved numerically by the 4th order Runge-Kutta method. The method of numerical simulation and numerical results are presented. The magnetic field distribution is calculated as the function of coordinate and time at different values of the bias current. The influence of model parameters on the CVC is studied. The behavior of the IJJ in dependence on coupling parameters is discussed.

  16. Modified pressure loss model for T-junctions of engine exhaust manifold

    NASA Astrophysics Data System (ADS)

    Wang, Wenhui; Lu, Xiaolu; Cui, Yi; Deng, Kangyao

    2014-11-01

    The T-junction model of engine exhaust manifolds significantly influences the simulation precision of the pressure wave and mass flow rate in the intake and exhaust manifolds of diesel engines. Current studies have focused on constant pressure models, constant static pressure models and pressure loss models. However, low model precision is a common disadvantage when simulating engine exhaust manifolds, particularly for turbocharged systems. To study the performance of junction flow, a cold wind tunnel experiment with high velocities at the junction of a diesel exhaust manifold is performed, and the variation in the pressure loss in the T-junction under different flow conditions is obtained. Despite the trend of the calculated total pressure loss coefficient, which is obtained by using the original pressure loss model and is the same as that obtained from the experimental results, large differences exist between the calculated and experimental values. Furthermore, the deviation becomes larger as the flow velocity increases. By improving the Vazsonyi formula considering the flow velocity and introducing the distribution function, a modified pressure loss model is established, which is suitable for a higher velocity range. Then, the new model is adopted to solve one-dimensional, unsteady flow in a D6114 turbocharged diesel engine. The calculated values are compared with the measured data, and the result shows that the simulation accuracy of the pressure wave before the turbine is improved by 4.3% with the modified pressure loss model because gas compressibility is considered when the flow velocities are high. The research results provide valuable information for further junction flow research, particularly the correction of the boundary condition in one-dimensional simulation models.

  17. Mouse models for core binding factor leukemia.

    PubMed

    Chin, D W L; Watanabe-Okochi, N; Wang, C Q; Tergaonkar, V; Osato, M

    2015-10-01

    RUNX1 and CBFB are among the most frequently mutated genes in human leukemias. Genetic alterations such as chromosomal translocations, copy number variations and point mutations have been widely reported to result in the malfunction of RUNX transcription factors. Leukemias arising from such alterations in RUNX family genes are collectively termed core binding factor (CBF) leukemias. Although adult CBF leukemias generally are considered a favorable risk group as compared with other forms of acute myeloid leukemia, the 5-year survival rate remains low. An improved understanding of the molecular mechanism for CBF leukemia is imperative to uncover novel treatment options. Over the years, retroviral transduction-transplantation assays and transgenic, knockin and knockout mouse models alone or in combination with mutagenesis have been used to study the roles of RUNX alterations in leukemogenesis. Although successful in inducing leukemia, the existing assays and models possess many inherent limitations. A CBF leukemia model which induces leukemia with complete penetrance and short latency would be ideal as a platform for drug discovery. Here, we summarize the currently available mouse models which have been utilized to study CBF leukemias, discuss the advantages and limitations of individual experimental systems, and propose suggestions for improvements of mouse models. PMID:26165235

  18. Models of Isotopic Fractionation in Prestellar Cores

    NASA Technical Reports Server (NTRS)

    Charnley, Steven B.

    2012-01-01

    Anomalously fractionated isotopic material is found in many primitive Solar System objects, such as meteorites and comets. It is thought, in some cases, to trace interstellar matter that was incorporated into the Solar Nebula without undergoing significant processing. We will present the results of models of the nitrogen, oxygen, and carbon fractionation chemistry in dense molecular clouds, particularly in cores where substantial freeze-out of molecules on to dust has occurred. The range of fractionation ratios expected in different interstellar molecules will be discussed and compared to the ratios measured in molecular clouds, comets and meteoritic material. These studies make several predictions that can be tested in the near future by high-resolution molecular line observations with ALMA.

  19. Models of Isotopic Fractionation in Prestellar Cores

    NASA Technical Reports Server (NTRS)

    Charnley, Steven B.; Cordiner, Martin A.

    2011-01-01

    Anomalously fractionated isotopic material is found in many primitive Solar System objects, such as meteorites and comets. It is thought, in some cases, to trace interstellar matter that was incorporated into the Solar Nebula without undergoing significant processing. We will present the results of models of the nitrogen, oxygen, and carbon fractionation chemistry in dense molecular clouds, particularly in cores where substantial freeze-out of molecules on to dust has occurred. The range of fractionation ratios expected in different interstellar molecules will be discussed and compared to the ratios measured in molecular clouds, comets and meteoritic material. These studies make several predictions that can be tested in the near future by high-resolution molecular line observations with ALMA.

  20. No-Core Shell Model and Reactions

    SciTech Connect

    Navratil, Petr; Ormand, W. Erich; Caurier, Etienne; Bertulani, Carlos

    2005-10-14

    There has been a significant progress in ab initio approaches to the structure of light nuclei. Starting from realistic two- and three-nucleon interactions the ab initio no-core shell model (NCSM) can predict low-lying levels in p-shell nuclei. It is a challenging task to extend ab initio methods to describe nuclear reactions. In this contribution, we present a brief overview of the NCSM with examples of recent applications as well as the first steps taken toward nuclear reaction applications. In particular, we discuss cross section calculations of p+6Li and 6He+p scattering as well as a calculation of the astrophysically important 7Be(p,{gamma})8B S-factor.

  1. No-Core Shell Model and Reactions

    SciTech Connect

    Navratil, P; Ormand, W E; Caurier, E; Bertulani, C

    2005-04-29

    There has been a significant progress in ab initio approaches to the structure of light nuclei. Starting from realistic two- and three-nucleon interactions the ab initio no-core shell model (NCSM) can predict low-lying levels in p-shell nuclei. It is a challenging task to extend ab initio methods to describe nuclear reactions. In this contribution, we present a brief overview of the NCSM with examples of recent applications as well as the first steps taken toward nuclear reaction applications. In particular, we discuss cross section calculations of p+{sup 6}Li and {sup 6}He+p scattering as well as a calculation of the astrophysically important {sup 7}Be(p, {gamma}){sup 8}B S-factor.

  2. Theoretical values of various parameters in the Gummel-Poon model of a bipolar junction transistor

    NASA Technical Reports Server (NTRS)

    Benumof, R.; Zoutendyk, J.

    1986-01-01

    Various parameters in the Gummel-Poon model of a bipolar junction transistor are expressed in terms of the basic structure of a transistor. A consistent theoretical approach is used which facilitates an understanding of the foundations and limitations of the derived formulas. The results enable one to predict how changes in the geometry and composition of a transistor would affect performance.

  3. Vector spin modeling for magnetic tunnel junctions with voltage dependent effects

    NASA Astrophysics Data System (ADS)

    Manipatruni, Sasikanth; Nikonov, Dmitri E.; Young, Ian A.

    2014-05-01

    Integration and co-design of CMOS and spin transfer devices requires accurate vector spin conduction modeling of magnetic tunnel junction (MTJ) devices. A physically realistic model of the MTJ should comprehend the spin torque dynamics of nanomagnet interacting with an injected vector spin current and the voltage dependent spin torque. Vector spin modeling allows for calculation of 3 component spin currents and potentials along with the charge currents/potentials in non-collinear magnetic systems. Here, we show 4-component vector spin conduction modeling of magnetic tunnel junction devices coupled with spin transfer torque in the nanomagnet. Nanomagnet dynamics, voltage dependent spin transport, and thermal noise are comprehended in a self-consistent fashion. We show comparison of the model with experimental magnetoresistance (MR) of MTJs and voltage degradation of MR with voltage. Proposed model enables MTJ circuit design that comprehends voltage dependent spin torque effects, switching error rates, spin degradation, and back hopping effects.

  4. Vector spin modeling for magnetic tunnel junctions with voltage dependent effects

    SciTech Connect

    Manipatruni, Sasikanth Nikonov, Dmitri E.; Young, Ian A.

    2014-05-07

    Integration and co-design of CMOS and spin transfer devices requires accurate vector spin conduction modeling of magnetic tunnel junction (MTJ) devices. A physically realistic model of the MTJ should comprehend the spin torque dynamics of nanomagnet interacting with an injected vector spin current and the voltage dependent spin torque. Vector spin modeling allows for calculation of 3 component spin currents and potentials along with the charge currents/potentials in non-collinear magnetic systems. Here, we show 4-component vector spin conduction modeling of magnetic tunnel junction devices coupled with spin transfer torque in the nanomagnet. Nanomagnet dynamics, voltage dependent spin transport, and thermal noise are comprehended in a self-consistent fashion. We show comparison of the model with experimental magnetoresistance (MR) of MTJs and voltage degradation of MR with voltage. Proposed model enables MTJ circuit design that comprehends voltage dependent spin torque effects, switching error rates, spin degradation, and back hopping effects.

  5. Multiscale modelling of nucleosome core particle aggregation

    NASA Astrophysics Data System (ADS)

    Lyubartsev, Alexander P.; Korolev, Nikolay; Fan, Yanping; Nordenskiöld, Lars

    2015-02-01

    The nucleosome core particle (NCP) is the basic building block of chromatin. Under the influence of multivalent cations, isolated mononucleosomes exhibit a rich phase behaviour forming various columnar phases with characteristic NCP-NCP stacking. NCP stacking is also a regular element of chromatin structure in vivo. Understanding the mechanism of nucleosome stacking and the conditions leading to self-assembly of NCPs is still incomplete. Due to the complexity of the system and the need to describe electrostatics properly by including the explicit mobile ions, novel modelling approaches based on coarse-grained (CG) methods at the multiscale level becomes a necessity. In this work we present a multiscale CG computer simulation approach to modelling interactions and self-assembly of solutions of NCPs induced by the presence of multivalent cations. Starting from continuum simulations including explicit three-valent cobalt(III)hexammine (CoHex3+) counterions and 20 NCPs, based on a previously developed advanced CG NCP model with one bead per amino acid and five beads per two DNA base pair unit (Fan et al 2013 PLoS One 8 e54228), we use the inverse Monte Carlo method to calculate effective interaction potentials for a ‘super-CG’ NCP model consisting of seven beads for each NCP. These interaction potentials are used in large-scale simulations of up to 5000 NCPs, modelling self-assembly induced by CoHex3+. The systems of ‘super-CG’ NCPs form a single large cluster of stacked NCPs without long-range order in agreement with experimental data for NCPs precipitated by the three-valent polyamine, spermidine3+.

  6. Feynman's and Ohta's Models of a Josephson Junction

    ERIC Educational Resources Information Center

    De Luca, R.

    2012-01-01

    The Josephson equations are derived by means of the weakly coupled two-level quantum system model given by Feynman. Adopting a simplified version of Ohta's model, starting from Feynman's model, the strict voltage-frequency Josephson relation is derived. The contribution of Ohta's approach to the comprehension of the additional term given by the…

  7. EXPOSED LONG-LIFETIME FIRST CORE: A NEW MODEL OF FIRST CORES BASED ON RADIATION HYDRODYNAMICS

    SciTech Connect

    Tomida, Kengo; Tomisaka, Kohji; Machida, Masahiro N.; Saigo, Kazuya; Matsumoto, Tomoaki E-mail: tomisaka@th.nao.ac.j E-mail: saigo.kazuya@nao.ac.j

    2010-12-20

    A first adiabatic core is a transient object formed in the early phase of star formation. The observation of a first core is believed to be difficult because of its short lifetime and low luminosity. On the basis of radiation hydrodynamic simulations, we propose a novel theoretical model of first cores, the Exposed Long-lifetime First core (ELF). In the very low-mass molecular core, the first core evolves slowly and lives longer than 10,000 years because the accretion rate is considerably low. The evolution of ELFs is different from that of ordinary first cores because radiation cooling has a significant effect there. We also carry out a radiation-transfer calculation of dust-continuum emission from ELFs to predict their observational properties. ELFs have slightly fainter but similar spectral energy distributions to ordinary first cores in radio wavelengths, therefore they can be observed. Although the probabilities that such low-mass cores become gravitationally unstable and start to collapse are low, we still can expect that a considerable number of ELFs can be formed because there are many low-mass molecular cloud cores in star-forming regions that could be progenitors of ELFs.

  8. Tight-binding model for amine-terminated oligophenyl molecular junctions formed with carbon electrodes

    NASA Astrophysics Data System (ADS)

    Kim, Deok Hyeon; Kim, Taekyeong

    2015-05-01

    We measured the conductance of a series of amine-terminated oligophenyl molecular junction formed with carbon electrodes by using a scanning tunneling microscope based break-junction technique. The tight-binding model that includes the molecular backbone states accurately captured the experimentally measured the molecular conductance and the exponential decay trend of the conductance with the molecular backbone length. Furthermore, we found that this model tracked successfully the shift of the highest occupied molecular orbital toward the Fermi energy as increasing the molecular length. Finally, we found that the tight-binding model explaining more week coupling strength with the graphite electrode than that with the Au electrode is in quantitative agreement with the density functional theory calculations.

  9. Physical model of the contact resistivity of metal-graphene junctions

    SciTech Connect

    Chaves, Ferney A. Jiménez, David; Cummings, Aron W.; Roche, Stephan

    2014-04-28

    While graphene-based technology shows great promise for a variety of electronic applications, including radio-frequency devices, the resistance of the metal-graphene contact is a technological bottleneck for the realization of viable graphene electronics. One of the most important factors in determining the resistance of a metal-graphene junction is the contact resistivity. Despite the large number of experimental works that exist in the literature measuring the contact resistivity, a simple model of it is still lacking. In this paper, we present a comprehensive physical model for the contact resistivity of these junctions, based on the Bardeen Transfer Hamiltonian method. This model unveils the role played by different electrical and physical parameters in determining the specific contact resistivity, such as the chemical potential of interaction, the work metal-graphene function difference, and the insulator thickness between the metal and graphene. In addition, our model reveals that the contact resistivity is strongly dependent on the bias voltage across the metal-graphene junction. This model is applicable to a wide variety of graphene-based electronic devices and thus is useful for understanding how to optimize the contact resistance in these systems.

  10. A new model for four-terminal junction field-effect transistors

    NASA Astrophysics Data System (ADS)

    Ding, Hao; Liou, Juin J.; Green, Keith; Cirba, Claude R.

    2006-03-01

    This paper presents a compact and semi-empirical model for a four-terminal (independent top and bottom gates) junction field-effect transistor (JFET). The model describes the steady-state characteristics for all bias conditions with a unified equation. Moreover, the model provides a high degree of accuracy and continuity for the different operation regions, a critical factor for robust analog circuit simulations. Capacitance modeling is also included to describe the JFET small-signal behavior. The model has been implemented in Cadence framework via Verilog-A and compared with data measured from JFETs used at Texas Instruments.

  11. Solitons in Josephson junctions

    NASA Astrophysics Data System (ADS)

    Ustinov, A. V.

    1998-11-01

    Magnetic flux quanta in Josephson junctions, often called fluxons, in many cases behave as solitons. A review of recent experiments and modelling of fluxon dynamics in Josephson circuits is presented. Classic quasi-one-dimensional junctions, stacked junctions (Josephson superlattices), and discrete Josephson transmission lines (JTLs) are discussed. Applications of fluxon devices as high-frequency oscillators and digital circuits are also addressed.

  12. Spontaneous calcium signals induced by gap junctions in a network model of astrocytes

    NASA Astrophysics Data System (ADS)

    Kazantsev, V. B.

    2009-01-01

    The dynamics of a network model of astrocytes coupled by gap junctions is investigated. Calcium dynamics of the single cell is described by the biophysical model comprising the set of three nonlinear differential equations. Intercellular dynamics is provided by the diffusion of inositol 1,4,5-trisphosphate (IP3) through gap junctions between neighboring astrocytes. It is found that the diffusion induces the appearance of spontaneous activity patterns in the network. Stability of the network steady state is analyzed. It is proved that the increase of the diffusion coefficient above a certain critical value yields the generation of low-amplitude subthreshold oscillatory signals in a certain frequency range. It is shown that such spontaneous oscillations can facilitate calcium pulse generation and provide a certain time scale in astrocyte signaling.

  13. Ab Initio No-Core Shell Model

    SciTech Connect

    Barrett, B R; Navratil, P; Vary, J P

    2011-04-11

    and NNN interactions, characterized by the order of the expansion retained (e.g. 'next-to-next-to leading order' is NNLO), provide a high-quality fit to the NN data and the A = 3 ground-state (g.s.) properties. The derivations of NN, NNN, etc. interactions within meson-exchange and {chi}EFT are well-established but are not subjects of this review. Our focus is solution of the non-relativistic quantum many-body Hamiltonian that includes these interactions using our no core shell model (NCSM) formalism. In the next section we will briefly outline the NCSM formalism and then present applications, results and extensions in later sections.

  14. Electron tunneling through molecule-electrode contacts of single alkane molecular junctions: experimental determination and a practical barrier model.

    PubMed

    Wang, Kun; Xu, Bingqian

    2016-04-14

    An advanced understanding of the molecule-electrode contact interfaces of single-molecule junctions is a necessity for real world application of future single-molecule devices. This study aims to elucidate the change in the contact tunnelling barrier induced by junction extension and how this change affects the resulting junction conductance. The contact barrier of Au-octanedithiol/octanediamine-Au junctions was studied under triangle (TRI) mechanical modulations using the modified scanning tunneling microscopy (STM) break junction technique. The experimental results reveal that as the junction separation extends, the contact barrier of octanedithiol follows a unique trend, a linear increase followed by a plateau in barrier height, which is in contrast to that of octanediamine, a nearly rectangle barrier. We propose a modified contact barrier model for the unique barrier shape of octanedithiol, based on which the calculation agrees well with the experimental data. This study shows unprecedented experimental features of the molecule-electrode contact barrier of single-molecule junctions and provides new insights into the nature of contact effect in determining electron transport through single-molecule junctions. PMID:26988278

  15. Opto-electronic modeling of light emission from avalanche-mode silicon p+n junctions

    NASA Astrophysics Data System (ADS)

    Dutta, Satadal; Hueting, Raymond J. E.; Annema, Anne-Johan; Qi, Lin; Nanver, Lis K.; Schmitz, Jurriaan

    2015-09-01

    This work presents the modeling of light emission from silicon based p+n junctions operating in avalanche breakdown. We revisit the photon emission process under the influence of relatively high electric fields in a reverse biased junction ( > 10 5 V/cm). The photon emission rate is described as a function of the electron temperature T e , which is computed from the spatial distribution of the electric field. The light emission spectra lie around the visible spectral range ( λ ˜ 300-850 nm), where the peak wavelength and the optical intensity are both doping level dependent. It is theoretically derived that a specific minimum geometrical width ( ˜ 170 nm) of the active region of avalanche is required, corresponding to a breakdown voltage of ˜5 V, below which the rate of photon emission in the desired spectrum drops. The derived model is validated using experimental data obtained from ultra-shallow p+n junctions with low absorption through a nm-thin p+ region and surface coverage of solely 3 nm of pure boron. We observe a peak in the emission spectra near 580 nm and 650 nm for diodes with breakdown voltages 7 V and 14 V, respectively, consistent with our model.

  16. Mathematical modeling of gap junction coupling and electrical activity in human β-cells

    NASA Astrophysics Data System (ADS)

    Loppini, Alessandro; Braun, Matthias; Filippi, Simonetta; Gram Pedersen, Morten

    2015-12-01

    Coordinated insulin secretion is controlled by electrical coupling of pancreatic β-cells due to connexin-36 gap junctions. Gap junction coupling not only synchronizes the heterogeneous β-cell population, but can also modify the electrical behavior of the cells. These phenomena have been widely studied with mathematical models based on data from mouse β-cells. However, it is now known that human β-cell electrophysiology shows important differences to its rodent counterpart, and although human pancreatic islets express connexin-36 and show evidence of β-cell coupling, these aspects have been little investigated in human β-cells. Here we investigate theoretically, the gap junction coupling strength required for synchronizing electrical activity in a small cluster of cells simulated with a recent mathematical model of human β-cell electrophysiology. We find a lower limit for the coupling strength of approximately 20 pS (i.e., normalized to cell size, ˜2 pS pF-1) below which spiking electrical activity is asynchronous. To confront this theoretical lower bound with data, we use our model to estimate from an experimental patch clamp recording that the coupling strength is approximately 100-200 pS (10-20 pS pF-1), similar to previous estimates in mouse β-cells. We then investigate the role of gap junction coupling in synchronizing and modifying other forms of electrical activity in human β-cell clusters. We find that electrical coupling can prolong the period of rapid bursting electrical activity, and synchronize metabolically driven slow bursting, in particular when the metabolic oscillators are in phase. Our results show that realistic coupling conductances are sufficient to promote synchrony in small clusters of human β-cells as observed experimentally, and provide motivation for further detailed studies of electrical coupling in human pancreatic islets.

  17. A model of dopant diffusion through a strongly correlated p-n junction

    NASA Astrophysics Data System (ADS)

    Wieteska, Jedrzej; Brierley, Richard; Guzman-Verri, Gian; Moller, Gunnar; Littlewood, Peter; Littlewood group Collaboration

    The diffusion of charged ions in a solid depends on an equation of state that balances diffusive and screened electrostatic forces, and is well understood in the case of conventional semiconductors and metals. In the case of a strongly-correlated material, the physics is different, and expected to be relevant, for example, in Li-ion battery cathodes. We propose a model of dopant ion motion through a strongly correlated p-n junction. Our approach is to consider diffusive (Nernst-Planck) dynamics of dopants under screened electrostatic interactions computed within a mean-field (Thomas-Fermi) approximation. Dopant profiles as function of time are calculated for a p-n junction held at constant voltage. In the case where filling levels are near a correlation-induced gap, Mott insulating regions can form at the p-n interface and their dynamics is studied.

  18. An improved bipolar junction transistor model for electrical and radiation effects

    SciTech Connect

    Kleiner, C.T.; Messenger, G.C.

    1982-12-01

    The use of bipolar technology in hardened electronic design requires an in-depth understanding of how the Bipolar Junction Transistor (BJT) behaves under normal electrical and radiation environments. Significant improvements in BJT process technology have been reported, and the successful use of sophisticated Computer Aided Design (CAD) tools has aided implementation with respect to specific families of hardened devices. The most advanced BJT model used to date is the Improved Gummel-Poon (IGP) model which is used in CAA programs such as the SPICE II and SLICE programs. The earlier Ebers-Moll model (ref 1 and 2) has also been updated to compare with the older Gummel-Poon model. This paper describes an adaptation of an existing computer model which incorporates the best features of both models into a new, more accurate model called the Improved Bipolar Junction Transistor model. This paper also describes a unique approach to data reduction for the B(I /SUB c/) and V /SUB BE/(ACT) vs I /SUB c/characterizations which has been successfully programmed in Basic using a Commodore PET computer. This model is described in the following sections.

  19. Modelling CO depletion in starless cores

    NASA Astrophysics Data System (ADS)

    Rawlings, Jonathan M. C.

    In recent years there has been a dramatic increase in the observational detection of molecular depletion in star-forming dark clouds. In many cases the data is of very high quality and what was once considered a rather hypothetical process is now almost universally accepted as a (the) major cause of the presence of emission 'holes' in molecular maps of dense cores. However, the interpretation of the data can be severely undermined by uncertainties in the physics and chemistry. This is particularly true in the case of general molecular studies of active star-forming regions. For these objects there exist strong degeneracies between various chemical effects (gas-phase time-dependencies, desorption processes and efficiencies, ionization rates etc.) and poorly constrained physics (most particularly in the assumed kinematics and evolutionary history). Whilst these problems result in unacceptable ambiguities in the case of evolved sources, we can make significant progress for young, near-static cores and using molecular species with simple chemistries. A considerable set of constraints on the free parameters is now provided by the extensive sub-millimetre continuum and infra-red absorption studies of starless cores. These observations give us good descriptions of the temperature and density profiles in these sources. Moreover CO is to a large extent chemically inert, so that any decline of abundance at high densities can (primarily) be interpreted as being a consequence of freeze-out. Thus there are only two major free parameters:- the net depletion/desorption rate and the chemical age of the source. In this study CO abundance profiles are calculated as a function of time for cores whose temperature and density profiles have already been determined. The results are corrected for excitation effects and converted to synthetic maps, assuming typical single-dish beam parameters and source characteristics. A strong correlation with existing depletion maps is found and strong

  20. Important issues facing model-based approaches to tunneling transport in molecular junctions

    NASA Astrophysics Data System (ADS)

    Bâldea, Ioan

    Extensive studies on thin films indicated a generic cubic current-voltage $I-V$ dependence as a salient feature of charge transport by tunneling. A quick glance at $I-V$ data for molecular junctions suggests a qualitatively similar behavior. This would render model-based studies almost irrelevant, since, whatever the model, its parameters can always be adjusted to fit symmetric (asymmetric) $I-V$ curves characterized by two (three) expansion coefficients. Here, we systematically examine popular models based on tunneling barrier or tight-binding pictures and demonstrate that, for a quantitative description at biases of interest ($V$ slightly higher than the transition voltage $V_t$), cubic expansions do not suffice. A detailed collection of analytical formulae as well as their conditions of applicability are presented to facilitate experimentalists colleagues to process and interpret their experimental data by obtained by measuring currents in molecular junctions. We discuss in detail the limits of applicability of the various models and emphasize that uncritically adjusting model parameters to experiment may be unjustified because the values deduced in this way may fall in ranges rendering a specific model invalid or incompatible to ab initio estimates. We exemplify with the benchmark case of oligophenylene-based junctions, for which results of ab initio quantum chemical calculations are also reported. As a specific issue, we address the impact of the spatial potential profile and show that it is not notable up to biases V somewhat larger than V_t, unlike at higher biases, where it may be responsible for negative differential resistance effects.

  1. Important issues facing model-based approaches to tunneling transport in molecular junctions.

    PubMed

    Bâldea, Ioan

    2015-08-21

    Extensive studies on thin films indicated a generic cubic current-voltage I-V dependence as a salient feature of charge transport by tunneling. A quick glance at I-V data for molecular junctions suggests a qualitatively similar behavior. This would render model-based studies almost irrelevant, since, whatever the model, its parameters can always be adjusted to fit symmetric (asymmetric) I-V curves characterized by two (three) expansion coefficients. Here, we systematically examine popular models based on tunneling barriers or tight-binding pictures and demonstrate that, for a quantitative description at biases of interest (V slightly higher than the transition voltage Vt), cubic expansions do not suffice. A detailed collection of analytical formulae as well as their conditions of applicability is presented to facilitate experimentalist colleagues to process and interpret their experimental data obtained by measuring currents in molecular junctions. We discuss in detail the limits of applicability of the various models and emphasize that uncritically adjusting the model parameters to experiment may be unjustified because the values deduced in this way may fall in ranges rendering a specific model invalid or incompatible to ab initio estimates. We exemplify with the benchmark case of oligophenylene-based junctions, for which the results of ab initio quantum chemical calculations are also reported. As a specific issue, we address the impact of the spatial potential profile and show that it is not notable up to biases V ≳ Vt, unlike at higher biases, where it may be responsible for negative differential resistance effects. PMID:26186139

  2. Nanomanipulation and Lithography: The Building (and Modeling) of Carbon Nanotube Magnetic Tunnel Junctions

    NASA Astrophysics Data System (ADS)

    Louie, Richard Nam

    2002-12-01

    Aircraft fuselages suffer alternating stress during takeoffs and landings, and fatigue cracks begin to grow, usually at rivet holes. The detection of these fatigue cracks under installed fasteners in aging aircraft is a major goal of the nondestructive evaluation (NDE) community. The use of giant magnetoresistance (GMR) sensors in electromagnetic (EM) NDE has been increasing rapidly. For example, here at Langley Research Center, a Rotating Probe System (RPS) containing a GMR element has been incorporated into a product to detect deeply buried flaws in aerospace structures. In order to advance this eddy current probe application and many similar ones, research to create smaller, more sensitive and energy-efficient EM sensors has been aggressively pursued. Recent theoretical and experimental work on spin coherent transport supports the feasibility of carbon nanotube (CNT) based magnetic tunnel junctions. In this study, a spatial filtering scheme is presented that improves the signal to noise ratio of the RPS and does not significantly impact the number of false alarms. Signals due to buried flaws occur at higher frequencies than do signals due to rivet tilt or probe misalignment, and the strategy purposefully targets this fact. Furthermore, the spatial filtering scheme exploits decreases in the probe output that are observed immediately preceding and following the peak in output due to a fatigue crack. Using the new filters, an enhanced probability of flaw detection is expected. In the future, even tinier, more sensitive, low-power sensors are envisioned for the rotating probe and other nondestructive inspection systems. These may be comprised of single-walled carbon nanotubes (SWCNTs) that connect two ferromagnetic (FM) electrodes. Theoretical work has been done at Langley to model the electrical and magnetoconductance behavior of such junctions, for systems containing short "armchair" nanotubes. The present work facilitates the modeling of more realistic system

  3. Human alveolar epithelial cells expressing tight junctions to model the air-blood barrier.

    PubMed

    Kuehn, Anna; Kletting, Stephanie; de Souza Carvalho-Wodarz, Cristiane; Repnik, Urska; Griffiths, Gareth; Fischer, Ulrike; Meese, Eckart; Huwer, Hanno; Wirth, Dagmar; May, Tobias; Schneider-Daum, Nicole; Lehr, Claus-Michael

    2016-01-01

    This paper describes a new human alveolar epithelial cell line (hAELVi - human Alveolar Epithelial Lentivirus immortalized) with type I-like characteristics and functional tight junctions, suitable to model the air-blood barrier of the peripheral lung. Primary human alveolar epithelial cells were immortalized by a novel regimen, grown as monolayers on permeable filter supports and characterized morphologically, biochemically and biophysically. hAELVi cells maintain the capacity to form tight intercellular junctions, with high trans-epithelial electrical resistance (> 1000 Ω*cm²). The cells could be kept in culture over several days, up to passage 75, under liquid-liquid as well as air-liquid conditions. Ultrastructural analysis and real time PCR revealed type I-like cell properties, such as the presence of caveolae, expression of caveolin-1, and absence of surfactant protein C. Accounting for the barrier properties, inter-digitations sealed with tight junctions and desmosomes were also observed. Low permeability of the hydrophilic marker sodium fluorescein confirmed the suitability of hAELVi cells for in vitro transport studies across the alveolar epithelium. These results suggest that hAELVi cells reflect the essential features of the air-blood barrier, as needed for an alternative to animal testing to study absorption and toxicity of inhaled drugs, chemicals and nanomaterials. PMID:26985677

  4. Adaptive Phase-Field Modeling of Anisotropic Wetting with Line Tension at the Triple Junction.

    PubMed

    Yeh, S Y; Lan, C W

    2015-09-01

    Line tension could affect the contact angle at triple junction, especially in micro- to nanoscale wetting. We have developed an adaptive phase-field model to consider the line tension quantitatively. This model is coupled to the smoothed boundary method for treating the contact line with the solid phase, while the volume constraint is imposed. Our calculated contact angles are in good agreement with the modified Young's equation. Further examples are illustrated for the anisotropic wetting on hydrophilic/hydrophobic stripes and rectangular grooves. PMID:26274914

  5. Modeling of Schottky Barrier Modulation due to Oxidation at Metallic Electrode and Semiconducting Carbon Nanotube Junction

    NASA Technical Reports Server (NTRS)

    Yamada, Toshishige; Biegel, Bryan (Technical Monitor)

    2003-01-01

    A model is proposed for the previously reported lower Schottky barrier for holes PHI (sub bH) in air than in vacuum at a metallic electrode - semiconducting carbon nanotube (CNT) junction. We assume that there is a transition region between the electrode and the CNT, and an appreciable potential can drop there. The role of the oxidation is to increase this potential drop with negatively charged oxygen molecules on the CNT, leading to lower PHI(sub Bh) after oxidation. The mechanism prevails in both p- and n-CNTs, and the model consistently explains the key experimental findings.

  6. Stochastic Model of Gap Junctions Exhibiting Rectification and Multiple Closed States of Slow Gates.

    PubMed

    Snipas, Mindaugas; Kraujalis, Tadas; Paulauskas, Nerijus; Maciunas, Kestutis; Bukauskas, Feliksas F

    2016-03-29

    Gap-junction (GJ) channels formed from connexin (Cx) proteins provide direct pathways for electrical and metabolic cell-cell communication. Earlier, we developed a stochastic 16-state model (S16SM) of voltage gating of the GJ channel containing two pairs of fast and slow gates, each operating between open (o) and closed (c) states. However, experimental data suggest that gates may in fact contain two or more closed states. We developed a model in which the slow gate operates according to a linear reaction scheme, o↔c1↔c2, where c1 and c2 are initial-closed and deep-closed states that both close the channel fully, whereas the fast gate operates between the open state and the closed state and exhibits a residual conductance. Thus, we developed a stochastic 36-state model (S36SM) of GJ channel gating that is sensitive to transjunctional voltage (Vj). To accelerate simulation and eliminate noise in simulated junctional conductance (gj) records, we transformed an S36SM into a Markov chain 36-state model (MC36SM) of GJ channel gating. This model provides an explanation for well-established experimental data, such as delayed gj recovery after Vj gating, hysteresis of gj-Vj dependence, and the low ratio of functional channels to the total number of GJ channels clustered in junctional plaques, and it has the potential to describe chemically mediated gating, which cannot be reflected using an S16SM. The MC36SM, when combined with global optimization algorithms, can be used for automated estimation of gating parameters including probabilities of c1↔c2 transitions from experimental gj-time and gj-Vj dependencies. PMID:27028642

  7. A semi-analytic dynamical friction model for cored galaxies

    NASA Astrophysics Data System (ADS)

    Petts, J. A.; Read, J. I.; Gualandris, A.

    2016-08-01

    We present a dynamical friction model based on Chandrasekhar's formula that reproduces the fast inspiral and stalling experienced by satellites orbiting galaxies with a large constant density core. We show that the fast inspiral phase does not owe to resonance. Rather, it owes to the background velocity distribution function for the constant density core being dissimilar from the usually-assumed Maxwellian distribution. Using the correct background velocity distribution function and the semi-analytic model from Petts et al. (2015), we are able to correctly reproduce the infall rate in both cored and cusped potentials. However, in the case of large cores, our model is no longer able to correctly capture core-stalling. We show that this stalling owes to the tidal radius of the satellite approaching the size of the core. By switching off dynamical friction when rt(r) = r (where rt is the tidal radius at the satellite's position) we arrive at a model which reproduces the N-body results remarkably well. Since the tidal radius can be very large for constant density background distributions, our model recovers the result that stalling can occur for Ms/Menc ≪ 1, where Ms and Menc are the mass of the satellite and the enclosed galaxy mass, respectively. Finally, we include the contribution to dynamical friction that comes from stars moving faster than the satellite. This next-to-leading order effect becomes the dominant driver of inspiral near the core region, prior to stalling.

  8. An improved bipolar junction transistor model for electrical and radiation effects

    NASA Astrophysics Data System (ADS)

    Kleiner, C. T.; Messenger, G. C.

    1982-12-01

    A bipolar transistor model is introduced which combines most of the best features of the modified Ebers-Moll (1954) model with the Gummel-Poon (1970) model. The model is constructed of two modified Ebers-Moll models with the addition of junction and basewidth modulation to account for leakage current dependence on reverse voltage and beta dependence on collector-emitter voltage. The electrical characteristics that can be obtained with the model include: nonlinear beta and V(BE) vs normal I(C) and/or inverted I(E); increase in f(T) from low injection to peak beta and decrease in f(T) beyond peak beta; nonlinear R(CX) vs I(C) and V(CE); inclusion of base-width modulation as a function of reverse bias for V(CB) or V(EB); and inclusion of junction leakage as a function of reverse bias. Radiation characteristics that can be obtained include: photocurrent generation and saturation including photocurrent response time; dose-rate modulation of resistors; inclusion of neutron damage constant as a function of injection level and incorporation of fast annealing; inclusion of temperature dependence.

  9. A seismologically consistent compositional model of Earth's core.

    PubMed

    Badro, James; Côté, Alexander S; Brodholt, John P

    2014-05-27

    Earth's core is less dense than iron, and therefore it must contain "light elements," such as S, Si, O, or C. We use ab initio molecular dynamics to calculate the density and bulk sound velocity in liquid metal alloys at the pressure and temperature conditions of Earth's outer core. We compare the velocity and density for any composition in the (Fe-Ni, C, O, Si, S) system to radial seismological models and find a range of compositional models that fit the seismological data. We find no oxygen-free composition that fits the seismological data, and therefore our results indicate that oxygen is always required in the outer core. An oxygen-rich core is a strong indication of high-pressure and high-temperature conditions of core differentiation in a deep magma ocean with an FeO concentration (oxygen fugacity) higher than that of the present-day mantle. PMID:24821817

  10. Solid charged-core model of ball lightning

    NASA Astrophysics Data System (ADS)

    Muldrew, D. B.

    2010-01-01

    In this study, ball lightning (BL) is assumed to have a solid, positively-charged core. According to this underlying assumption, the core is surrounded by a thin electron layer with a charge nearly equal in magnitude to that of the core. A vacuum exists between the core and the electron layer containing an intense electromagnetic (EM) field which is reflected and guided by the electron layer. The microwave EM field applies a ponderomotive force (radiation pressure) to the electrons preventing them from falling into the core. The energetic electrons ionize the air next to the electron layer forming a neutral plasma layer. The electric-field distributions and their associated frequencies in the ball are determined by applying boundary conditions to a differential equation given by Stratton (1941). It is then shown that the electron and plasma layers are sufficiently thick and dense to completely trap and guide the EM field. This model of BL is exceptional in that it can explain all or nearly all of the peculiar characteristics of BL. The ES energy associated with the core charge can be extremely large which can explain the observations that occasionally BL contains enormous energy. The mass of the core prevents the BL from rising like a helium-filled balloon - a problem with most plasma and burning-gas models. The positively charged core keeps the negatively charged electron layer from diffusing away, i.e. it holds the ball together; other models do not have a mechanism to do this. The high electrical charges on the core and in the electron layer explains why some people have been electrocuted by BL. Experiments indicate that BL radiates microwaves upon exploding and this is consistent with the model. The fact that this novel model of BL can explain these and other observations is strong evidence that the model should be taken seriously.

  11. Core formation, evolution, and convection: A geophysical model

    NASA Technical Reports Server (NTRS)

    Ruff, L.; Anderson, D. L.

    1978-01-01

    A model is proposed for the formation and evolution of the Earth's core which provides an adequate energy source for maintaining the geodynamo. A modified inhomogeneous accretion model is proposed which leads to initial iron and refractory enrichment at the center of the planet. The probable heat source for melting of the core is the decay of Al. The refractory material is emplaced irregularly in the lowermost mantle with uranium and thorium serving as a long lived heat source. Fluid motions in the core are driven by the differential heating from above and the resulting cyclonic motions may be the source of the geodynamo.

  12. Core formation, evolution, and convection - A geophysical model

    NASA Technical Reports Server (NTRS)

    Ruff, L.; Anderson, D. L.

    1980-01-01

    A model for the formation and evolution of the earth's core, which provides an adequate energy source for maintaining the geodynamo, is proposed. A modified inhomogeneous accretion model is proposed which leads to initial iron and refractory enrichment at the center of the planet. The probable heat source for melting of the core is the decay of Al-26. The refractory material is emplaced irregularly in the lowermost mantle with uranium and thorium serving as a long-lived heat source. Fluid motions in the core are driven by the differential heating from above and the resulting cyclonic motions may be the source of the geodynamo.

  13. Modeling the Arm II core in MicroCap IV

    SciTech Connect

    Dalton, A.C.

    1996-11-01

    This paper reports on how an electrical model for the core of the Arm II machine was created and how to use this model. We wanted to get a model for the electrical characteristics of the ARM II core, in order to simulate this machine and to assist in the design of a future machine. We wanted this model to be able to simulate saturation, variable loss, and reset. Using the Hodgdon model and the circuit analysis program MicroCap IV, this was accomplished. This paper is written in such a way as to allow someone not familiar with the project to understand it.

  14. Model-Form Uncertainty Quantification in RANS Simulation of Wing-Body Junction Flow

    NASA Astrophysics Data System (ADS)

    Wu, Jinlong; Wang, Jianxun; Xiao, Heng

    2015-11-01

    Junction flow, known as one of the remaining challenges for computational aerodynamics, occurs when a boundary layer encounters an obstacle mounted on the surface. Previous studies have shown that the RANS models are not capable to provide satisfactory prediction. In this work, a novel open-box, physics-informed Bayesian framework is used to quantify the model-form uncertainties in RANS simulation of junction flow. The first objective is to correct the bias in RANS prediction, by utilizing several observation data. The second one is to quantify the model-form uncertainties, which can enable risk-informed decision-making. To begin with a standard RANS simulation, which is performed on a 3:2 elliptic nose and NACA0020 tail cylinder, uncertainties with empirical prior knowledge and physical constraints are directly injected into the Reynolds stresses term, and the unbiased knowledge from observation data is incorporated by an iterative ensemble Kalman method. Current results show that the bias in the quantities of interest (QoIs) of the RANS prediction, e.g., mean velocity, turbulent kinetic energy, etc, can be significantly corrected by this novel Bayesian framework. The probability density distributions of QoIs show that the model-form uncertainty can be quantified as well.

  15. Toward a mineral physics reference model for the Moon's core.

    PubMed

    Antonangeli, Daniele; Morard, Guillaume; Schmerr, Nicholas C; Komabayashi, Tetsuya; Krisch, Michael; Fiquet, Guillaume; Fei, Yingwei

    2015-03-31

    The physical properties of iron (Fe) at high pressure and high temperature are crucial for understanding the chemical composition, evolution, and dynamics of planetary interiors. Indeed, the inner structures of the telluric planets all share a similar layered nature: a central metallic core composed mostly of iron, surrounded by a silicate mantle, and a thin, chemically differentiated crust. To date, most studies of iron have focused on the hexagonal closed packed (hcp, or ε) phase, as ε-Fe is likely stable across the pressure and temperature conditions of Earth's core. However, at the more moderate pressures characteristic of the cores of smaller planetary bodies, such as the Moon, Mercury, or Mars, iron takes on a face-centered cubic (fcc, or γ) structure. Here we present compressional and shear wave sound velocity and density measurements of γ-Fe at high pressures and high temperatures, which are needed to develop accurate seismic models of planetary interiors. Our results indicate that the seismic velocities proposed for the Moon's inner core by a recent reanalysis of Apollo seismic data are well below those of γ-Fe. Our dataset thus provides strong constraints to seismic models of the lunar core and cores of small telluric planets. This allows us to propose a direct compositional and velocity model for the Moon's core. PMID:25775531

  16. Theoretical results on the tandem junction solar cell based on its Ebers-Moll transistor model

    NASA Technical Reports Server (NTRS)

    Goradia, C.; Vaughn, J.; Baraona, C. R.

    1980-01-01

    A one-dimensional theoretical model of the tandem junction solar cell (TJC) with base resistivity greater than about 1 ohm-cm and under low level injection has been derived. This model extends a previously published conceptual model which treats the TJC as an npn transistor. The model gives theoretical expressions for each of the Ebers-Moll type currents of the illuminated TJC and allows for the calculation of the spectral response, I(sc), V(oc), FF and eta under variation of one or more of the geometrical and material parameters and 1MeV electron fluence. Results of computer calculations based on this model are presented and discussed. These results indicate that for space applications, both a high beginning of life efficiency, greater than 15% AM0, and a high radiation tolerance can be achieved only with thin (less than 50 microns) TJC's with high base resistivity (greater than 10 ohm-cm).

  17. Self-consistent model of spin accumulation magnetoresistance in ferromagnet/insulator/semiconductor tunnel junctions

    NASA Astrophysics Data System (ADS)

    Appelbaum, Ian; Tinkey, Holly N.; Li, Pengke

    2014-12-01

    Spin accumulation in a paramagnetic semiconductor due to voltage-biased current tunneling from a polarized ferromagnet is experimentally manifest as a small additional spin-dependent resistance. We describe a rigorous model incorporating the necessary self-consistency between electrochemical potential splitting, spin-dependent injection current, and applied voltage that can be used to simulate this so-called "3 T " signal as a function of temperature, doping, ferromagnet bulk spin polarization, tunnel barrier features and conduction nonlinearity, and junction voltage bias.

  18. Experimental Testing and Modeling Analysis of Solute Mixing at Water Distribution Pipe Junctions

    EPA Science Inventory

    Flow dynamics at a pipe junction controls particle trajectories, solute mixing and concentrations in downstream pipes. Here we have categorized pipe junctions into five hydraulic types, for which flow distribution factors and analytical equations for describing the solute mixing ...

  19. p-n Junction Photocurrent Modelling Evaluation under Optical and Electrical Excitation

    PubMed Central

    Dervos, Constantine T.; Skafidas, Panayotis D.; Mergos, John A.; Vassiliou, Panayota

    2004-01-01

    Based upon the quasi-equilibrium approximation, the validity of p-n junction modelling, has been experimentally investigated under synchronous electrical and optical excitation of silicon photo-diodes. The devices had areas of 8.2 mm2 and reverse bias saturation currents of the order of 10-10 A. Their current-voltage (I-V) response was exploited experimentally both in the dark and under various illumination levels. The quoted values for the saturation current, the ideality factor, the series resistance and the reverse-bias photocurrent are investigated for the simulation of the I-V curves via the quasi-equilibrium model. In addition, the measured I-V data have been further analysed to estimate the produced photocurrent as a function of the applied bias (forward or reverse) under given illumination levels. Comparisons between the simulated curves and the experimental data allowed a detailed photocurrent modelling validation. The proposed approach could be useful towards studying other parameters of optically activated p-n junctions such as: the bias dependence of the minority carrier diffusion lengths and/or the generated rates of electron-hole pairs (EHP).

  20. Deriving a Core Magnetic Field Model from Swarm Satellite Data

    NASA Astrophysics Data System (ADS)

    Lesur, V.; Rother, M.; Wardinski, I.

    2014-12-01

    A model of the Earth's core magnetic field has been built using Swarm satellite mission data and observatory quasi-definitive data. The satellite data processing scheme, which was used to derive previous satellite field models (i.e. GRIMM series), has been modified to handle discrepancies between the satellite total intensity data derived from the vector fluxgate magnetometer and the absolute scalar instrument. Further, the Euler angles, i.e. the angles between the vector magnetometer and the satellite reference frame, have been recalculated on a series of 30-day windows to obtain an accurate model of the core field for 2014. Preliminary derivations of core magnetic field and SV models for 2014 present the same characteristics as during the CHAMP era. The acceleration (i.e. the field second time derivative) has shown a rapid evolution over the last few years, and is present in the current model, which confirms previous observations.

  1. Summary of multi-core hardware and programming model investigations

    SciTech Connect

    Kelly, Suzanne Marie; Pedretti, Kevin Thomas Tauke; Levenhagen, Michael J.

    2008-05-01

    This report summarizes our investigations into multi-core processors and programming models for parallel scientific applications. The motivation for this study was to better understand the landscape of multi-core hardware, future trends, and the implications on system software for capability supercomputers. The results of this study are being used as input into the design of a new open-source light-weight kernel operating system being targeted at future capability supercomputers made up of multi-core processors. A goal of this effort is to create an agile system that is able to adapt to and efficiently support whatever multi-core hardware and programming models gain acceptance by the community.

  2. Rapid remodeling of tight junctions during paracellular diapedesis in a human model of the blood-brain barrier.

    PubMed

    Winger, Ryan C; Koblinski, Jennifer E; Kanda, Takashi; Ransohoff, Richard M; Muller, William A

    2014-09-01

    Leukocyte transendothelial migration (TEM; diapedesis) is a critical event in immune surveillance and inflammation. Most TEM occurs at endothelial cell borders (paracellular). However, there is indirect evidence to suggest that, at the tight junctions of the blood-brain barrier (BBB), leukocytes migrate directly through the endothelial cell body (transcellular). Why leukocytes migrate through the endothelial cell body rather than the cell borders is unknown. To test the hypothesis that the tightness of endothelial cell junctions influences the pathway of diapedesis, we developed an in vitro model of the BBB that possessed 10-fold higher electrical resistance than standard culture conditions and strongly expressed the BBB tight junction proteins claudin-5 and claudin-3. We found that paracellular TEM was still the predominant pathway (≥98%) and TEM was dependent on PECAM-1 and CD99. We show that endothelial tight junctions expressing claudin-5 are dynamic and undergo rapid remodeling during TEM. Membrane from the endothelial lateral border recycling compartment is mobilized to the exact site of tight junction remodeling. This preserves the endothelial barrier by sealing the intercellular gaps with membrane and engaging the migrating leukocyte with unligated adhesion molecules (PECAM-1 and CD99) as it crosses the cell border. These findings provide new insights into leukocyte-endothelial interactions at the BBB and suggest that tight junctions are more dynamic than previously appreciated. PMID:25063869

  3. A parabolic model to control quantum interference in T-shaped molecular junctions.

    PubMed

    Nozaki, Daijiro; Sevinçli, Hâldun; Avdoshenko, Stanislav M; Gutierrez, Rafael; Cuniberti, Gianaurelio

    2013-09-01

    Quantum interference (QI) effects in molecular devices have drawn increasing attention over the past years due to their unique features observed in the conductance spectrum. For the further development of single molecular devices exploiting QI effects, it is of great theoretical and practical interest to develop simple methods controlling the emergence and the positions of QI effects like anti-resonances or Fano line shapes in conductance spectra. In this work, starting from a well-known generic molecular junction with a side group (T-shaped molecule), we propose a simple graphical method to visualize the conditions for the appearance of quantum interference, Fano resonances or anti-resonances, in the conductance spectrum. By introducing a simple graphical representation (parabolic diagram), we can easily visualize the relation between the electronic parameters and the positions of normal resonant peaks and anti-resonant peaks induced by quantum interference in the conductance spectrum. This parabolic model not only can predict the emergence and energetic position of quantum interference from a few electronic parameters but also can enable one to know the coupling between the side group and the main conduction channel from measurements in the case of orthogonal basis. The results obtained within the parabolic model are validated using density-functional based quantum transport calculations in realistic T-shaped molecular junctions. PMID:23558406

  4. Implementation of total dose effects in the bipolar junction transistor Gummel-Poon model

    SciTech Connect

    Montagner, X.; Fouillat, P.; Briand, R.; Touboul, A.; Schrimpf, R.D.; Galloway, K.F.; Calvet, M.C.; Calvel, P.

    1997-12-01

    The effects of total dose on the SPICE model of bipolar junction transistors are investigated. The limitations of the standard Gummel-Poon model for simulating the radiation-induced excess base current are analyzed, and a new model based on an empirical approach is proposed. Four new SPICE rad-parameters are presented, and investigated for different dose rates. The relevant parameters are extracted using a new algorithmic procedure, combining a genetic approach and the standard optimization technique which minimizes the RMS error between measured and simulated excess base current. It is shown that the excess base current is accurately described by the same formula whatever the device type is. An empirical fitting of the rad-parameters as a function of total dose is proposed to use in hardening electronic circuits for space-like environments.

  5. A novel soft-core spherocylinder model for liquid crystals

    NASA Astrophysics Data System (ADS)

    Zong, Jing; Zhang, Xinghua; Wang, Qiang

    2010-03-01

    Interaction models with soft-core repulsions that allow particle overlapping give orders of magnitude faster/better sampling of configurational space than those with hard-core repulsions (e.g., hard spherocylinders or Gay-Berne potential). While several soft-core spherocylinder models were recently proposed^1, their repulsive interaction depends only on the shortest distance between two spherocylinders. Here we present a novel, computationally efficient soft-core spherocylinder model, which gives exact treatment of the excluded-volume interactions and anisotropic shape of two particles (thus the orientational interaction between them favoring their parallel alignment). It further takes into account the degree of overlap between the two particles, thus superior to other soft-core models. This model has great potential applications in the study of liquid crystals, block copolymers containing rod blocks, and liquid crystalline polymers. [1] Z. E. Hughes et al., Comput. Phys. Commun., 178, 724 (2008); J. S. Lintuvuori and M. R. Wilson, J. Chem. Phys., 128, 044906 (2008).

  6. Seismic tomography and deformation modeling of the junction of the San Andreas and Calaveras faults

    USGS Publications Warehouse

    Dorbath, C.; Oppenheimer, D.; Amelung, F.; King, G.

    1996-01-01

    Local earthquake P traveltime data is inverted to obtain a three-dimensional tomographic image of the region centered on the junction of the San Andreas and Calaveras faults. The resulting velocity model is then used to relocate more than 17,000 earthquakes and to produce a model of fault structure in the region. These faults serve as the basis for modeling the topography using elastic dislocation methods. The region is of interest because active faults join, it marks the transition zone from creeping to locked fault behavior on the San Andreas fault, it exhibits young topography, and it has a good spatial distribution of seismicity. The tomographic data set is extensive, consisting of 1445 events, 96 stations, and nearly 95,000 travel time readings. Tomographic images are resolvable to depths of 12 km and show significant velocity contrasts across the San Andreas and Calaveras faults, a low-velocity zone associated with the creeping section of the San Andreas fault, and shallow low-velocity sediments in the southern Santa Clara valley and northern Salinas valley. Relocated earthquakes only occur where vp>5 km/s and indicate that portions of the San Andreas and Calaveras faults are non vertical, although we cannot completely exclude the possibility that all or part of this results from ray tracing problems. The new dips are more consistent with geological observations that dipping faults intersect the surface where surface traces have been mapped. The topographic modeling predicts extensive subsidence in regions characterized by shallow low-velocity material, presumably the result of recent sedimentation. Some details of the topography at the junction of the San Andreas and Calaveras faults are not consistent with the modeling results, suggesting that the current position of this "triple junction" has changed with time. The model also predicts those parts of the fault subject to contraction or extension perpendicular to the fault strike and hence the sense of any

  7. Modeling of Core Competencies in the Registrar's Office

    ERIC Educational Resources Information Center

    Pikowsky, Reta

    2009-01-01

    The Office of the Registrar at the Georgia Institute of Technology, in cooperation with the Office of Human Resources, has been engaged since February 2008 in a pilot project to model core competencies for the leadership team and the staff. It is the hope of the office of Human resources that this pilot will result in a model that can be used…

  8. Core-oscillator model of Caulobacter crescentus

    NASA Astrophysics Data System (ADS)

    Vandecan, Yves; Biondi, Emanuele; Blossey, Ralf

    2016-06-01

    The gram-negative bacterium Caulobacter crescentus is a powerful model organism for studies of bacterial cell cycle regulation. Although the major regulators and their connections in Caulobacter have been identified, it still is a challenge to properly understand the dynamics of its circuitry which accounts for both cell cycle progression and arrest. We show that the key decision module in Caulobacter is built from a limit cycle oscillator which controls the DNA replication program. The effect of an induced cell cycle arrest is demonstrated to be a key feature to classify the underlying dynamics.

  9. Core/corona modeling of diode-imploded annular loads

    NASA Astrophysics Data System (ADS)

    Terry, R. E.; Guillory, J. U.

    1980-11-01

    The effects of a tenuous exterior plasma corona with anomalous resistivity on the compression and heating of a hollow, collisional aluminum z-pinch plasma are predicted by a one-dimensional code. As the interior ("core") plasma is imploded by its axial current, the energy exchange between core and corona determines the current partition. Under the conditions of rapid core heating and compression, the increase in coronal current provides a trade-off between radial acceleration and compression, which reduces the implosion forces and softens the pitch. Combined with a heuristic account of energy and momentum transport in the strongly coupled core plasma and an approximate radiative loss calculation including Al line, recombination and Bremsstrahlung emission, the current model can provide a reasonably accurate description of imploding annular plasma loads that remain azimuthally symmetric. The implications for optimization of generator load coupling are examined.

  10. Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia.

    PubMed

    Koroleva, O A; Calder, G; Pendle, A F; Kim, S H; Lewandowska, D; Simpson, C G; Jones, I M; Brown, J W S; Shaw, P J

    2009-05-01

    Here, we identify the Arabidopsis thaliana ortholog of the mammalian DEAD box helicase, eIF4A-III, the putative anchor protein of exon junction complex (EJC) on mRNA. Arabidopsis eIF4A-III interacts with an ortholog of the core EJC component, ALY/Ref, and colocalizes with other EJC components, such as Mago, Y14, and RNPS1, suggesting a similar function in EJC assembly to animal eIF4A-III. A green fluorescent protein (GFP)-eIF4A-III fusion protein showed localization to several subnuclear domains: to the nucleoplasm during normal growth and to the nucleolus and splicing speckles in response to hypoxia. Treatment with the respiratory inhibitor sodium azide produced an identical response to the hypoxia stress. Treatment with the proteasome inhibitor MG132 led to accumulation of GFP-eIF4A-III mainly in the nucleolus, suggesting that transition of eIF4A-III between subnuclear domains and/or accumulation in nuclear speckles is controlled by proteolysis-labile factors. As revealed by fluorescence recovery after photobleaching analysis, the nucleoplasmic fraction was highly mobile, while the speckles were the least mobile fractions, and the nucleolar fraction had an intermediate mobility. Sequestration of eIF4A-III into nuclear pools with different mobility is likely to reflect the transcriptional and mRNA processing state of the cell. PMID:19435936

  11. Blockade of Gap Junction Hemichannel Suppresses Disease Progression in Mouse Models of Amyotrophic Lateral Sclerosis and Alzheimer's Disease

    PubMed Central

    Takeuchi, Hideyuki; Mizoguchi, Hiroyuki; Doi, Yukiko; Jin, Shijie; Noda, Mariko; Liang, Jianfeng; Li, Hua; Zhou, Yan; Mori, Rarami; Yasuoka, Satoko; Li, Endong; Parajuli, Bijay; Kawanokuchi, Jun; Sonobe, Yoshifumi; Sato, Jun; Yamanaka, Koji; Sobue, Gen; Mizuno, Tetsuya; Suzumura, Akio

    2011-01-01

    Background Glutamate released by activated microglia induces excitotoxic neuronal death, which likely contributes to non-cell autonomous neuronal death in neurodegenerative diseases, including amyotrophic lateral sclerosis and Alzheimer's disease. Although both blockade of glutamate receptors and inhibition of microglial activation are the therapeutic candidates for these neurodegenerative diseases, glutamate receptor blockers also perturbed physiological and essential glutamate signals, and inhibitors of microglial activation suppressed both neurotoxic/neuroprotective roles of microglia and hardly affected disease progression. We previously demonstrated that activated microglia release a large amount of glutamate specifically through gap junction hemichannel. Hence, blockade of gap junction hemichannel may be potentially beneficial in treatment of neurodegenerative diseases. Methods and Findings In this study, we generated a novel blood-brain barrier permeable gap junction hemichannel blocker based on glycyrrhetinic acid. We found that pharmacologic blockade of gap junction hemichannel inhibited excessive glutamate release from activated microglia in vitro and in vivo without producing notable toxicity. Blocking gap junction hemichannel significantly suppressed neuronal loss of the spinal cord and extended survival in transgenic mice carrying human superoxide dismutase 1 with G93A or G37R mutation as an amyotrophic lateral sclerosis mouse model. Moreover, blockade of gap junction hemichannel also significantly improved memory impairments without altering amyloid β deposition in double transgenic mice expressing human amyloid precursor protein with K595N and M596L mutations and presenilin 1 with A264E mutation as an Alzheimer's disease mouse model. Conclusions Our results suggest that gap junction hemichannel blockers may represent a new therapeutic strategy to target neurotoxic microglia specifically and prevent microglia-mediated neuronal death in various

  12. Macro model for stochastic behavior of resistance distribution of magnetic tunnel junction

    NASA Astrophysics Data System (ADS)

    Kil, Gyuhyun; Choi, Juntae; Song, Yunheub

    2015-04-01

    In this work, we fabricated MgO-based magnetic tunnel junction (MTJ) samples to observe behavior of resistance variation, and investigated a stochastic behavior model for MTJ resistance from measured real data. We found the relationship between parallel resistance (RP), anti-parallel resistance (RAP), and TMR from the measurements. The variation of barrier thickness affects not only resistance but also TMR. This means that broad RAP distribution is caused by RP distribution. In addition, RAP distribution can be reduced by increasing temperature and bias voltage. We developed a macro model that can evaluate resistance distribution based on the stochastic behavior of MTJ resistance variation from only tox varied. The amount of resistance variation, which is considered with regard to the circuit performance, can be obtained from Δtox designed by designer. In addition, the impact for operating circumstance such as bias and temperature can be considered by using fit equations.

  13. Large magnetocapacitance effect in magnetic tunnel junctions based on Debye-Fröhlich model

    SciTech Connect

    Kaiju, Hideo Takei, Masashi; Misawa, Takahiro; Nishii, Junji; Nagahama, Taro; Xiao, Gang

    2015-09-28

    The frequency dependence of tunneling magnetocapacitance (TMC) in magnetic tunnel junctions (MTJs) is investigated theoretically and experimentally. According to the calculation based on Debye-Fröhlich model combined with Julliere formula, the TMC ratio strongly depends on the frequency and it has the maximum peak at a specific frequency. The calculated frequency dependence of TMC is in good agreement with the experimental results obtained in MgO-based MTJs with a tunneling magnetoresistance (TMR) ratio of 108%, which exhibit a large TMC ratio of 155% at room temperature. This calculation also predicts that the TMC ratio can be as large as about 1000% for a spin polarization of 87%, while the TMR ratio is 623% for the same spin polarization. These theoretical and experimental findings provide a deeper understanding on AC spin-dependent transport in the MTJs and will open up wider opportunities for device applications, such as highly sensitive magnetic sensors and impedance-tunable devices.

  14. DATA MANAGEMENT, STATISTICS AND COMMUNITY IMPACT MODELING CORE

    EPA Science Inventory

    EPA GRANT NUMBER: R832141C007
    Title: Data Management, Statistics and Community Impact Modeling Core
    Investigator: Frederica P Perera
    Institution: Columbia University
    EPA Project Officer: Nigel Fields
    Project Period: No...

  15. Model for LMFBR core transient analysis in real-time

    SciTech Connect

    Tzanos, C.P.

    1986-01-01

    This paper discusses the modeling of LMFBR core transients. It is shown that with a proper choice of shape functions a nodal approximation of the coolant, cladding, and fuel temperature distributions leads to adequately accurate power and temperature predictions, as well as adequately short computation times.

  16. Exact Analytical Solution of the Diode Ideality Factor of a pn Junction Device Using Lambert W-function Model

    NASA Astrophysics Data System (ADS)

    Bayhan, Habíbe; Sertap Kavasoglu, A.

    2007-01-01

    The paper presents a new analytical method for extracting the diode ideality factor of a p-n junction device using Lambert W-function model and the dark current-voltage data. The extracted values are found to be in good agreement with those calculated experimentally from dark current-voltage characteristics.

  17. A simple model for induction core voltage distributions

    SciTech Connect

    Briggs, Richard J.; Fawley, William M.

    2004-07-01

    In fall 2003 T. Hughes of MRC used a full EM simulation code (LSP) to show that the electric field stress distribution near the outer radius of the longitudinal gaps between the four Metglas induction cores is very nonuniform in the original design of the DARHT-2 accelerator cells. In this note we derive a simple model of the electric field distribution in the induction core region to provide physical insights into this result. The starting point in formulating our model is to recognize that the electromagnetic fields in the induction core region of the DARHT-2 accelerator cells should be accurately represented within a quasi-static approximation because the timescale for the fields to change is much longer than the EM wave propagation time. The difficulty one faces is the fact that the electric field is a mixture of both a ''quasi-magnetostatic field'' (having a nonzero curl, with Bdot the source) and a ''quasi-electrostatic field'' (the source being electric charges on the various metal surfaces). We first discuss the EM field structure on the ''micro-scale'' of individual tape windings in Section 2. The insights from that discussion are then used to formulate a ''macroscopic'' description of the fields inside an ''equivalent homogeneous tape wound core region'' in Section 3. This formulation explicitly separates the nonlinear core magnetics from the quasi-electrostatic components of the electric field. In Section 4 a physical interpretation of the radial dependence of the electrostatic component of the electric field derived from this model is presented in terms of distributed capacitances, and the voltage distribution from gap to gap is related to various ''equivalent'' lumped capacitances. Analytic solutions of several simple multi-core cases are presented in Sections 5 and 6 to help provide physical insight into the effect of various proposed changes in the geometrical parameters of the DARHT-2 accelerator cell. Our results show that over most of the gap

  18. Effective model for a short Josephson junction with a phase discontinuity

    NASA Astrophysics Data System (ADS)

    Goldobin, E.; Mironov, S.; Buzdin, A.; Mints, R. G.; Koelle, D.; Kleiner, R.

    2016-04-01

    We consider a short Josephson junction with a phase discontinuity κ created, e.g., by a pair of tiny current injectors, at some point x0 along the width of the junction. We derive the effective current-phase relation (CPR) for the system as a whole, i.e., reduce it to an effective pointlike junction. From the effective CPR we obtain the ground state of the system and predict the dependence of its critical current on κ . We show that in a large range of κ values the effective junction behaves as a φ0 Josephson junction, i.e., has a unique ground state phase φ0 within each 2 π interval. For κ ≈π and x0 near the middle of the junction one obtains a φ0±φ junction, i.e., a Josephson junction with degenerate ground state phase φ0±φ within each 2 π interval. Further, in view of possible escape experiments especially in the quantum domain, we investigate the scaling of the energy barrier and eigenfrequency close to the critical currents and predict the behavior of the escape histogram width σ (κ ) in the regime of the macroscopic quantum tunneling.

  19. Probiotics modify tight-junction proteins in an animal model of nonalcoholic fatty liver disease

    PubMed Central

    Briskey, David; Heritage, Mandy; Jaskowski, Lesley-Anne; Peake, Jonathan; Gobe, Glenda; Subramaniam, V. Nathan; Crawford, Darrell; Campbell, Catherine; Vitetta, Luis

    2016-01-01

    Background: We have investigated the effects of a multispecies probiotic preparation containing a combination of probiotic bacterial genera that included Bifidobacteria, Lactobacilli and a Streptococcus in a mouse model of high-fat diet or obesity-induced liver steatosis. Methods: Three groups of C57B1/6J mice were fed either a standard chow or a high-fat diet for 20 weeks, while a third group was fed a high-fat diet for 10 weeks and then concomitantly administered probiotics for a further 10 weeks. Serum, liver and large bowel samples were collected for analysis. Results: The expression of the tight-junction proteins ZO-1 and ZO-2 was reduced (p < 0.05) in high-fat diet-fed mice compared to chow-fed mice. Probiotic supplementation helped to maintain tight ZO-1 and ZO-2 expression compared with the high-fat diet group (p < 0.05), but did not restore ZO-1 or ZO-2 expression compared with chow-fed mice. Mice fed a high-fat diet ± probiotics had significant steatosis development compared with chow-fed mice (p < 0.05); steatosis was less severe in the probiotics group compared with the high-fat diet group. Hepatic triglyceride concentration was higher in mice fed a high-fat diet ± probiotics compared with the chow group (p < 0.05), and was lower in the probiotics group compared with the high-fat diet group (p < 0.05). Compared with chow-fed mice, serum glucose, cholesterol concentration and the activity of alanine transaminase were higher (p < 0.05), whereas serum triglyceride concentration was lower (p < 0.05) in mice fed a high-fat diet ± probiotics. Conclusions: Supplementation with a multispecies probiotic formulation helped to maintain tight-junction proteins ZO-1 and ZO-2, and reduced hepatic triglyceride concentration compared with a high-fat diet alone. PMID:27366215

  20. VIPRE modeling of VVER-1000 reactor core for DNB analyses

    SciTech Connect

    Sung, Y.; Nguyen, Q.; Cizek, J.

    1995-09-01

    Based on the one-pass modeling approach, the hot channels and the VVER-1000 reactor core can be modeled in 30 channels for DNB analyses using the VIPRE-01/MOD02 (VIPRE) code (VIPRE is owned by Electric Power Research Institute, Palo Alto, California). The VIPRE one-pass model does not compromise any accuracy in the hot channel local fluid conditions. Extensive qualifications include sensitivity studies of radial noding and crossflow parameters and comparisons with the results from THINC and CALOPEA subchannel codes. The qualifications confirm that the VIPRE code with the Westinghouse modeling method provides good computational performance and accuracy for VVER-1000 DNB analyses.

  1. A New Global Core Plasma Model of the Plasmasphere

    NASA Technical Reports Server (NTRS)

    Gallagher, D. L.; Comfort, R. H.; Craven, P. D.

    2014-01-01

    The Global Core Plasma Model (GCPM) is the first empirical model for thermal inner magnetospheric plasma designed to integrate previous models and observations into a continuous in value and gradient representation of typical total densities. New information about the plasmasphere, in particular, makes possible significant improvement. The IMAGE Mission Radio Plasma Imager (RPI) has obtained the first observations of total plasma densities along magnetic field lines in the plasmasphere and polar cap. Dynamics Explorer 1 Retarding Ion Mass Spectrometer (RIMS) has provided densities in temperatures in the plasmasphere for 5 ion species. These and other works enable a new more detailed empirical model of thermal in the inner magnetosphere that will be presented.

  2. Nanotube junctions

    DOEpatents

    Crespi, Vincent Henry; Cohen, Marvin Lou; Louie, Steven Gwon; Zettl, Alexander Karlwalte

    2004-12-28

    The present invention comprises a new nanoscale metal-semiconductor, semiconductor-semiconductor, or metal-metal junction, designed by introducing topological or chemical defects in the atomic structure of the nanotube. Nanotubes comprising adjacent sections having differing electrical properties are described. These nanotubes can be constructed from combinations of carbon, boron, nitrogen and other elements. The nanotube can be designed having different indices on either side of a junction point in a continuous tube so that the electrical properties on either side of the junction vary in a useful fashion. For example, the inventive nanotube may be electrically conducting on one side of a junction and semiconducting on the other side. An example of a semiconductor-metal junction is a Schottky barrier. Alternatively, the nanotube may exhibit different semiconductor properties on either side of the junction. Nanotubes containing heterojunctions, Schottky barriers, and metal-metal junctions are useful for microcircuitry.

  3. Nanotube junctions

    DOEpatents

    Crespi, Vincent Henry; Cohen, Marvin Lou; Louie, Steven Gwon Sheng; Zettl, Alexander Karlwalter

    2003-01-01

    The present invention comprises a new nanoscale metal-semiconductor, semiconductor-semiconductor, or metal-metal junction, designed by introducing topological or chemical defects in the atomic structure of the nanotube. Nanotubes comprising adjacent sections having differing electrical properties are described. These nanotubes can be constructed from combinations of carbon, boron, nitrogen and other elements. The nanotube can be designed having different indices on either side of a junction point in a continuous tube so that the electrical properties on either side of the junction vary in a useful fashion. For example, the inventive nanotube may be electrically conducting on one side of a junction and semiconducting on the other side. An example of a semiconductor-metal junction is a Schottky barrier. Alternatively, the nanotube may exhibit different semiconductor properties on either side of the junction. Nanotubes containing heterojunctions, Schottky barriers, and metal-metal junctions are useful for microcircuitry.

  4. A 2-dimensional fully analytical model for design of high voltage junction barrier Schottky (JBS) diodes

    NASA Astrophysics Data System (ADS)

    Radhakrishnan, Rahul; Zhao, Jian H.

    2011-09-01

    A physics-based closed form analytical model for the reverse leakage current of a high voltage junction barrier Schottky (JBS) diode is developed and shown to agree with experimental results. Maximum electric field "seen" by the Schottky contact is calculated from first principles by a 2-dimensional method as a function of JBS diode design parameters and confirmed by numerical simulations. Considering thermionic emission under image force barrier lowering and quantum mechanical tunneling, electric field at the Schottky contact is then related to reverse current. In combination with previously reported forward current and resistance models, this gives a complete I- V relationship for the JBS diode. A layout of interdigitated stripes of P-N and Schottky contacts at the anode is compared theoretically with a honeycomb layout and the 2-D model is extended to the 3-D honeycomb structure. Although simulation and experimental results from 4H-Silicon Carbide (SiC) diodes are used to validate it, the model itself is applicable to all JBS diodes.

  5. A model for core formation in the early Earth

    NASA Technical Reports Server (NTRS)

    Jones, J. H.; Drake, M. J.

    1985-01-01

    Two basic types exogenous models were proposed to account for siderophile and chalcophile element abundances in the Earth's upper mantle. The first model requires that the Earth be depleted in volatiles and that, after a core formation event which extracted the most siderophile elements into the core, additional noble siderophile elements (Pt, Ir, Au) were added as a late veneer and mixed into the mantle. The second model postulates a reduced Earth with approximately CI elemental abundances in which a primary core forming event depleted all siderophile elements in the mantle. The plausibility of models which require fine scale mixing of chondritic material into the upper mantle is analyzed. Mixing in liquids is more efficient, but large degrees of silicate partial melting will facilitate the separation of magma from residual solids. Any external events affecting the upper mantle of the Earth should also be evident in the Moon; but siderophile and chalcophile element abundance patterns inferred for the mantles of the Earth and Moon differ. There appear to be significant physical difficulties associated with chondritic veneer models.

  6. Three-dimensional thermal modeling for the Mendocino Triple Junction area

    NASA Astrophysics Data System (ADS)

    Goes, Saskia; Govers, Rob; Schwartz, Susan; Furlong, Kevin

    1997-04-01

    Complex interaction between the Pacific, North American, and Juan de Fuca plates at the northward migrating Mendocino Triple Junction (MTJ) has had a profound effect on the geological evolution of western North America. This paper presents a three-dimensional thermal model for the area around the MTJ that is based on its kinematic evolution, incorporating the effects of an asthenospheric slab window, changes in relative plate motions and the trenchward migration of the Juan de Fuca-Pacific spreading ridge. The thermal equation, including conductive and advective heat transport, is solved numerically using finite differences. Surface heat flow data and the trend in the maximum depth of seismicity south of the MTJ can be quite well explained by the thermal model. A finite lithospheric thickness above the slab window is required to fit heat flow measurements; however, the lack of data west of the San Andreas Fault prevents discriminating between underthrusting and accretionary mechanisms of lithospheric thickening. A comparison between the thermal and recent seismic velocity models reveals that P-wave anomalies in the uppermost mantle have smaller wavelengths and larger amplitudes than predicted if they were purely thermal.

  7. Experimental Model of Proximal Junctional Fracture after Multilevel Posterior Spinal Instrumentation

    PubMed Central

    Levasseur, Annie; Parent, Stefan; Petit, Yvan

    2016-01-01

    There is a high risk of proximal junctional fractures (PJF) with multilevel spinal instrumentation, especially in the osteoporotic spine. This problem is associated with significant morbidity and possibly the need for reoperation. Various techniques have been proposed in an attempt to decrease the risk of PJF but there is no experimental model described for in vitro production of PJF after multilevel instrumentation. The objective of this study is to develop an experimental model of PJF after multilevel posterior instrumentation. Initially, four porcine specimens including 4 vertebrae and instrumented at the 3 caudal vertebrae using a pedicle screw construct were subjected to different loading conditions. Loading conditions on porcine specimens involving cyclic loading along the axis of the center vertebral body line, with constrained flexion between 0° and 15° proximally, and fully constraining the specimen distally resulted in a fracture pattern most representative of a PJF seen clinically in humans, so to undergo human cadaveric testing with similar loading conditions was decided. Clinically relevant PJF were produced in all 3 human specimens. The experimental model described in this study will allow the evaluation of different parameters influencing the incidence and prevention of PJF after multilevel posterior spinal instrumentation. PMID:27610381

  8. Defects in neuromuscular junction remodelling in the Smn(2B/-) mouse model of spinal muscular atrophy.

    PubMed

    Murray, Lyndsay M; Beauvais, Ariane; Bhanot, Kunal; Kothary, Rashmi

    2013-01-01

    Spinal muscular atrophy (SMA) is a devastating childhood motor neuron disease caused by mutations and deletions within the survival motor neuron 1 (SMN1) gene. Although other tissues may be involved, motor neurons remain primary pathological targets, with loss of neuromuscular junctions (NMJs) representing an early and significant event in pathogenesis. Although defects in axonal outgrowth and pathfinding have been observed in cell culture and in lower organisms upon Smn depletion, developmental defects in mouse models have been less obvious. Here, we have employed the Smn(2B/-) mouse model to investigate NMJ remodelling during SMA pathology, induced reinnervation, and paralysis. We show that whilst NMJs are capable of remodelling during pathogenesis, there is a marked reduction in paralysis-induced remodelling and in the nerve-directed re-organisation of acetylcholine receptors. This reduction in remodelling potential could not be attributed to a decreased rate of axonal growth. Finally, we have identified a loss of terminal Schwann cells which could contribute to the defects in remodelling/maintenance observed. Our work demonstrates that there are specific defects in NMJ remodelling in an intermediate SMA mouse model, which could contribute to or underlie pathogenesis in SMA. The development of strategies that can promote the remodelling potential of NMJs may therefore be of significant benefit to SMA patients. PMID:22960106

  9. Experimental Model of Proximal Junctional Fracture after Multilevel Posterior Spinal Instrumentation.

    PubMed

    Mac-Thiong, Jean-Marc; Levasseur, Annie; Parent, Stefan; Petit, Yvan

    2016-01-01

    There is a high risk of proximal junctional fractures (PJF) with multilevel spinal instrumentation, especially in the osteoporotic spine. This problem is associated with significant morbidity and possibly the need for reoperation. Various techniques have been proposed in an attempt to decrease the risk of PJF but there is no experimental model described for in vitro production of PJF after multilevel instrumentation. The objective of this study is to develop an experimental model of PJF after multilevel posterior instrumentation. Initially, four porcine specimens including 4 vertebrae and instrumented at the 3 caudal vertebrae using a pedicle screw construct were subjected to different loading conditions. Loading conditions on porcine specimens involving cyclic loading along the axis of the center vertebral body line, with constrained flexion between 0° and 15° proximally, and fully constraining the specimen distally resulted in a fracture pattern most representative of a PJF seen clinically in humans, so to undergo human cadaveric testing with similar loading conditions was decided. Clinically relevant PJF were produced in all 3 human specimens. The experimental model described in this study will allow the evaluation of different parameters influencing the incidence and prevention of PJF after multilevel posterior spinal instrumentation. PMID:27610381

  10. Experimental Analysis and Modeling of the Crushing of Honeycomb Cores

    NASA Astrophysics Data System (ADS)

    Aminanda, Y.; Castanié, B.; Barrau, J.-J.; Thevenet, P.

    2005-05-01

    In the aeronautical field, sandwich structures are widely used for secondary structures like flaps or landing gear doors. The modeling of low velocity/low energy impact, which can lead to a decrease of the structure strength by 50%, remains a designer’s main problem. Since this type of impact has the same effect as quasi-static indentation, the study focuses on the behavior of honeycomb cores under compression. The crushing phenomenon has been well identified for years but its mechanism is not described explicitly and the model proposed may not satisfy industrial purposes. To understand the crushing mechanism, honeycomb test specimens made of Nomex™, aluminum alloy and paper were tested. During the crushing, a CCD camera showed that the cell walls buckled very quickly. The peak load recorded during tests corresponded to the buckling of the common edge of three honeycomb cells. Further tests on corner structures to simulate only one vertical edge of a honeycomb cell show a similar behavior. The different specimens exhibited similar load/displacement curves and the differences observed were only due to the behavior of the different materials. As a conclusion of this phenomenological study, the hypothesis that loads are mainly taken by the vertical edge can be made. So, a honeycomb core subjected to compression can be modeled by a grid of nonlinear springs. A simple analytical model was then developed and validated by tests on Nomex™ honeycomb core indented by different sized spherical indenters. A good correlation between theory and experiment was found. This result can be used to satisfactorily model using finite elements the indentation on a sandwich structure with a metallic or composite skin and honeycomb core.

  11. Geophysical Age Dating of Seamounts using Dense Core Flexure Model

    NASA Astrophysics Data System (ADS)

    Hwang, Gyuha; Kim, Seung-Sep

    2016-04-01

    Lithospheric flexure of oceanic plate is thermo-mechanical response of an elastic plate to the given volcanic construct (e.g., seamounts and ocean islands). If the shape and mass of such volcanic loads are known, the flexural response is governed by the thickness of elastic plate, Te. As the age of oceanic plate increases, the elastic thickness of oceanic lithosphere becomes thicker. Thus, we can relate Te with the age of plate at the time of loading. To estimate the amount of the driving force due to seamounts on elastic plate, one needs to approximate their density structure. The most common choice is uniform density model, which utilizes constant density value for a seamount. This approach simplifies computational processes for gravity prediction and error estimates. However, the uniform density model tends to overestimate the total mass of the seamount and hence produces more positive gravitational contributions from the load. Minimization of gravity misfits using uniform density, therefore, favors thinner Te in order to increase negative contributions from the lithospheric flexure, which can compensate for the excessive positives from the seamount. An alternative approach is dense core model, which approximate the heterogeneity nature of seamount density as three bodies of infill sediment, edifice, and dense core. In this study, we apply the dense core model to the Louisville Seamount Chain for constraining flexural deformation. We compare Te estimates with the loading time of the examined seamounts to redefine empirical geophysical age dating of seamounts.

  12. Kinematic History of a Salient-recess Junction Explored through a Combined Approach of Field Data and Analog Sandbox Modeling.

    PubMed

    Ismat, Zeshan; Toeneboehn, Kevin

    2016-01-01

    Within fold-thrust belts, the junctions between salients and recesses may hold critical clues to the overall kinematic history. The deformation history within these junctions is best preserved in areas where thrust sheets extend from a salient through an adjacent recess. We examine one such junction within the Sevier fold-thrust belt (western United States) along the Leamington transverse zone, northern Utah. Deformation within this junction took place by faulting and cataclastic flow. Here, we describe a protocol that examines these fault patterns to better understand the kinematic history of the field area. Fault data is supplemented by analog sandbox experiments. This study suggests that, in detail, deformation within the overlying thrust sheet may not directly reflect the underlying basement structure. We demonstrate that this combined field-experimental approach is easy, accessible, and may provide more details to the deformation preserved in the crust than other more expensive methods, such as computer modeling. In addition, the sandbox model may help to explain why and how these details formed. This method can be applied throughout fold-thrust belts, where upper-crustal rocks are well preserved. In addition, it can be modified to study any part of the upper crust that has been deformed via elastico-frictional mechanisms. Finally, this combined approach may provide more details as to how fold-thrust belts maintain critical-taper and serve as potential targets for natural resource exploration. PMID:27585112

  13. Coupled edge-core model of fusion reactor

    NASA Astrophysics Data System (ADS)

    Zagórski, R.; Kulinski, S.; Scholz, M.

    1997-10-01

    A model has been developed which is capable to describe in a self consistent way the plasma dynamics in the centre and edge region of a fusion reactor. The core plasma is treated in the frame of the 0D model in which an empirical scaling law for the energy confinement time is included. The model accounts for energy losses due to Bremsstrahlung and line radiation as well as alpha particle heating. A 1D analytical model for plasma and impurity transport outside the last close magnetic surface (LCMS) is applied. The model accounts for the strong gradients of the plasma parameters along the magnetic field lines in the divertor. The sputtering phenomena at the plate and radiating cooling by injected impurities are treated self consistently in the model. The model has been used to investigate operating regimes of the ignition experiment. Analysis have been performed for different first wall materials (C, Ni, Mo, W) for ITER like tokamak.

  14. Toxicants target cell junctions in the testis: Insights from the indazole-carboxylic acid model

    PubMed Central

    Cheng, C Yan

    2014-01-01

    There are numerous types of junctions in the seminiferous epithelium which are integrated with, and critically dependent on the Sertoli cell cytoskeleton. These include the basal tight junctions between Sertoli cells that form the main component of the blood–testis barrier, the basal ectoplasmic specializations (basal ES) and basal tubulobulbar complexes (basal TBC) between Sertoli cells; as well as apical ES and apical TBC between Sertoli cells and the developing spermatids that orchestrate spermiogenesis and spermiation. These junctions, namely TJ, ES, and TBC interact with actin microfilament-based cytoskeleton, which together with the desmosomal junctions that interact with the intermediate filament-based cytoskeleton plus the highly polarized microtubule-based cytoskeleton are working in concert to move spermatocytes and spermatids between the basal and luminal aspect of the seminiferous epithelium. In short, these various junctions are structurally complexed with the actin- and microtubule-based cytoskeleton or intermediate filaments of the Sertoli cell. Studies have shown toxicants (e.g., cadmium, bisphenol A (BPA), perfluorooctanesulfonate (PFOS), phthalates, and glycerol), and some male contraceptives under development (e.g., adjudin, gamendazole), exert their effects, at least in part, by targeting cell junctions in the testis. The disruption of Sertoli–Sertoli cell and Sertoli–germ cell junctions, results in the loss of germ cells from the seminiferous epithelium. Adjudin, a potential male contraceptive under investigation in our laboratory, produces loss of spermatids from the seminiferous tubules through disruption of the Sertoli cell spermatid junctions and disruption of the Sertoli cell cytoskeleton. The molecular and structural changes associated with adjudin administration are described, to provide an example of the profile of changes caused by disturbance of Sertoli-germ cell and also Sertoli cell-cell junctions. PMID:26413399

  15. Structural and spectral studies of sunspots. [umbral core modelling

    NASA Technical Reports Server (NTRS)

    Wyller, A. A.

    1974-01-01

    Observations of umbral cores, both by multicolor photometry and by narrow band photometry in the vicinity of the sodium D lines, are described, and evidence is given which supports the validity of many umbral models, each of which describes different aspects of the observed umbral cores. Theoretical studies carried on at the observatory include the following: (1) Zeeman profiles of the sodium D sub 2 line and other lines; (2) turbulent heat conduction, sound waves, and the missing flux in sunspots; (3) chromospheric heating above spots by Alfven waves; (4) magnetic convection in the sun and solar neutrinos; (5) models of starspots on flare stars; (5) starspots on the primaries of contact binary systems; and (6) implications of starspots on red dwarfs.

  16. Modeling of Intrinsic Josephson Junctions in High Temperature Superconductors under External Radiation in the Breakpoint Region

    NASA Astrophysics Data System (ADS)

    Shukrinov, Yu. M.; Rahmonov, I. R.; Plecenik, A.; Streltsova, O. I.; Zuev, M. I.; Ososkov, G. A.

    2016-02-01

    The current-voltage (IV) characteristics of the intrinsic Josephson junctions in high temperature superconductors under external electromagnetic radiation are calculated numerically in the parametric resonance region. We discuss a numerical method for calculation of the Shapiro step width on the amplitude of radiation. In order to accelerate computations we used parallelization by task parameter via Simple Linux Utility for Resource Management (SLURM) arrays and tested it in the case of a single junction. An analysis of the junction transitions between rotating and oscillating states in the branching region of IV-characteristics is presented.

  17. 98. View of IBM digital computer model 7090 magnet core ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    98. View of IBM digital computer model 7090 magnet core installation. ITT Artic Services, Inc., Official photograph BMEWS Site II, Clear, AK, by unknown photographer, 17 September 1965. BMEWS, clear as negative no. A-6606. - Clear Air Force Station, Ballistic Missile Early Warning System Site II, One mile west of mile marker 293.5 on Parks Highway, 5 miles southwest of Anderson, Anderson, Denali Borough, AK

  18. Spectroscopic modeling and analysis of plasma conditions in implosion cores

    NASA Astrophysics Data System (ADS)

    Golovkin, Igor E.

    In this dissertation we discuss the effects of opacity and plasma gradients on the analysis and interpretation of Ar K-shell line emission from Ar-doped inertial confinement fusion (ICF) experiments, and introduce a spectroscopic technique for the determination of core plasma gradients. In particular, the Ar Heβ composite spectral feature is used for core plasma temperature and density diagnostics. We present a versatile, spectroscopic-quality Non-Local-Thermodynamic- Equilibrium radiation transport model that takes into account the effects of collisional-radiative atomic kinetics, plasma gradients, Stark-broadened line shapes and radiation transport. The code computes the radiative properties of the plasma, and it can be easily adapted to treat different problems of spectra formation. We discuss the importance of high-order satellite emission in the formation of Heβ spectral feature, and the interpretation of core averaged electron temperatures and densities extracted from space integrated spectra of non- uniform plasmas. We also present an application of Genetic Algorithms to the analysis of experimental X-ray spectra. This algorithm drives the search for plasma parameters that yield the best fits to experimental spectra. We discuss the applicability of Case Injected Genetic Algorithms to accelerate analysis of spectra. Furthermore, we introduce a novel method for the determination of plasma temperature and density gradients in imploded cores. The gradients are extracted from the self-consistent analysis of time-resolved X-ray spectra and spatial emissivity distributions obtained from X-ray monochromatic images. In this case, the search in the complex parameter space of gradient functions is driven by a multi-objective Niched Pareto Genetic Algorithm. We discuss the analysis of time resolved spectra recorded during Ar-doped ICF implosions at the NOVA laser facility. Time histories of core averaged electron densities and temperatures during the collapse of the

  19. Thermal conductivity modeling of core-shell and tubular nanowires.

    PubMed

    Yang, Ronggui; Chen, Gang; Dresselhaus, Mildred S

    2005-06-01

    The heteroepitaxial growth of crystalline core-shell nanostructures of a variety of materials has become possible in recent years, allowing the realization of various novel nanoscale electronic and optoelectronic devices. The increased surface or interface area will decrease the thermal conductivity of such nanostructures and impose challenges for the thermal management of such devices. In the meantime, the decreased thermal conductivity might benefit the thermoelectric conversion efficiency. In this paper, we present modeling results on the lattice thermal conductivity of core-shell and tubular nanowires along the wire axis direction using the phonon Boltzmann equation. We report the dependence of the thermal conductivity on the surface conditions and the core-shell geometry for silicon core-germanium shell and tubular silicon nanowires at room temperature. The results show that the effective thermal conductivity changes not only with the composition of the constituents but also with the radius of the nanowires and nanopores due to the nature of the ballistic phonon transport. The results in this work have implications for the design and operation of a variety of nanoelectronic devices, optoelectronic devices, and thermoelectric materials and devices. PMID:15943452

  20. TOPICAL REVIEW: Ab initio symplectic no-core shell model

    NASA Astrophysics Data System (ADS)

    Dytrych, T.; Sviratcheva, K. D.; Draayer, J. P.; Bahri, C.; Vary, J. P.

    2008-12-01

    The no-core shell model (NCSM) is a prominent ab initio method that yields a good description of the low-lying states in few-nucleon systems as well as in more complex p-shell nuclei. Nevertheless, its applicability is limited by the rapid growth of the many-body basis with larger model spaces and increasing number of nucleons. The symplectic no-core shell model (Sp-NCSM) aspires to extend the scope of the NCSM beyond the p-shell region by augmenting the conventional spherical harmonic oscillator basis with the physically relevant symplectic \\SpR{3} symmetry-adapted configurations of the symplectic shell model that describe naturally the monopole-quadrupole vibrational and rotational modes, and also partially incorporate α-cluster correlations. In this review, the models underpinning the Sp-NCSM approach, namely, the NCSM, the Elliott SU(3) model and the symplectic shell model, are discussed. Following this, a prescription for constructing translationally invariant symplectic configurations in the spherical harmonic oscillator basis is given. This prescription is utilized to unveil the extent to which symplectic configurations enter into low-lying states in 12C and 16O nuclei calculated within the framework of the NCSM with the JISP16 realistic nucleon-nucleon interaction. The outcomes of this proof-of-principle study are presented in detail.

  1. Evaluating nuclear physics inputs in core-collapse supernova models

    SciTech Connect

    Lentz, Eric J; Hix, William Raphael; Baird, Mark L; Messer, Bronson; Mezzacappa, Anthony

    2010-01-01

    Core-collapse supernova models depend on the details of the nuclear and weak interaction physics inputs just as they depend on the details of the macroscopic physics (transport, hydrodynamics, etc.), numerical methods, and progenitors. We present the results of our ongoing comparison studies of nuclear and weak interaction physics inputs to core collapse supernova models using the spherically-symmetric, general relativistic, neutrino radiation hydrodynamics code Agile-Boltztran. We focus on comparisons of the effects of the nuclear EoS and the effects of improving the opacities, particularly neutrino--nucleon interactions. We present the results of our ongoing comparison studies of nuclear and weak interaction physics inputs to core collapse supernova models using the spherically-symmetric, general relativistic, neutrino radiation hydrodynamics code Agile-Boltztran. We focus on comparisons of the effects of the nuclear EoS and the effects of improving the opacities, particularly neutrino--nucleon interactions. We also investigate the feedback between different EoSs and opacities in the context of different progenitors.

  2. Quasi-exactly solvable relativistic soft-core Coulomb models

    SciTech Connect

    Agboola, Davids Zhang, Yao-Zhong

    2012-09-15

    By considering a unified treatment, we present quasi exact polynomial solutions to both the Klein-Gordon and Dirac equations with the family of soft-core Coulomb potentials V{sub q}(r)=-Z/(r{sup q}+{beta}{sup q}){sup 1/q}, Z>0, {beta}>0, q{>=}1. We consider cases q=1 and q=2 and show that both cases are reducible to the same basic ordinary differential equation. A systematic and closed form solution to the basic equation is obtained using the Bethe ansatz method. For each case, the expressions for the energies and the allowed parameters are obtained analytically and the wavefunctions are derived in terms of the roots of a set of Bethe ansatz equations. - Highlights: Black-Right-Pointing-Pointer The relativistic bound-state solutions of the soft-core Coulomb models. Black-Right-Pointing-Pointer Quasi-exact treatments of the Dirac and Klein-Gordon equations for the soft-core Coulomb models. Black-Right-Pointing-Pointer Solutions obtained in terms of the roots to the Bethe ansatz equations. Black-Right-Pointing-Pointer The hidden Lie algebraic structure discussed for the models. Black-Right-Pointing-Pointer Results useful in describing mesonic atoms and interaction of intense laser fields with atom.

  3. Destruction of the hepatocyte junction by intercellular invasion of Leptospira causes jaundice in a hamster model of Weil's disease

    PubMed Central

    Miyahara, Satoshi; Saito, Mitsumasa; Kanemaru, Takaaki; Villanueva, Sharon Y A M; Gloriani, Nina G; Yoshida, Shin-ichi

    2014-01-01

    Weil's disease, the most severe form of leptospirosis, is characterized by jaundice, haemorrhage and renal failure. The mechanisms of jaundice caused by pathogenic Leptospira remain unclear. We therefore aimed to elucidate the mechanisms by integrating histopathological changes with serum biochemical abnormalities during the development of jaundice in a hamster model of Weil's disease. In this work, we obtained three-dimensional images of infected hamster livers using scanning electron microscope together with freeze-cracking and cross-cutting methods for sample preparation. The images displayed the corkscrew-shaped bacteria, which infiltrated the Disse's space, migrated between hepatocytes, detached the intercellular junctions and disrupted the bile canaliculi. Destruction of bile canaliculi coincided with the elevation of conjugated bilirubin, aspartate transaminase and alkaline phosphatase levels in serum, whereas serum alanine transaminase and γ-glutamyl transpeptidase levels increased slightly, but not significantly. We also found in ex vivo experiments that pathogenic, but not non-pathogenic leptospires, tend to adhere to the perijunctional region of hepatocyte couplets isolated from hamsters and initiate invasion of the intercellular junction within 1 h after co-incubation. Our results suggest that pathogenic leptospires invade the intercellular junctions of host hepatocytes, and this invasion contributes in the disruption of the junction. Subsequently, bile leaks from bile canaliculi and jaundice occurs immediately. Our findings revealed not only a novel pathogenicity of leptospires, but also a novel mechanism of jaundice induced by bacterial infection. PMID:24945433

  4. Destruction of the hepatocyte junction by intercellular invasion of Leptospira causes jaundice in a hamster model of Weil's disease.

    PubMed

    Miyahara, Satoshi; Saito, Mitsumasa; Kanemaru, Takaaki; Villanueva, Sharon Y A M; Gloriani, Nina G; Yoshida, Shin-ichi

    2014-08-01

    Weil's disease, the most severe form of leptospirosis, is characterized by jaundice, haemorrhage and renal failure. The mechanisms of jaundice caused by pathogenic Leptospira remain unclear. We therefore aimed to elucidate the mechanisms by integrating histopathological changes with serum biochemical abnormalities during the development of jaundice in a hamster model of Weil's disease. In this work, we obtained three-dimensional images of infected hamster livers using scanning electron microscope together with freeze-cracking and cross-cutting methods for sample preparation. The images displayed the corkscrew-shaped bacteria, which infiltrated the Disse's space, migrated between hepatocytes, detached the intercellular junctions and disrupted the bile canaliculi. Destruction of bile canaliculi coincided with the elevation of conjugated bilirubin, aspartate transaminase and alkaline phosphatase levels in serum, whereas serum alanine transaminase and γ-glutamyl transpeptidase levels increased slightly, but not significantly. We also found in ex vivo experiments that pathogenic, but not non-pathogenic leptospires, tend to adhere to the perijunctional region of hepatocyte couplets isolated from hamsters and initiate invasion of the intercellular junction within 1 h after co-incubation. Our results suggest that pathogenic leptospires invade the intercellular junctions of host hepatocytes, and this invasion contributes in the disruption of the junction. Subsequently, bile leaks from bile canaliculi and jaundice occurs immediately. Our findings revealed not only a novel pathogenicity of leptospires, but also a novel mechanism of jaundice induced by bacterial infection. PMID:24945433

  5. Lattice charge models and core level shifts in disordered alloys.

    PubMed

    Underwood, T L; Cole, R J

    2013-10-30

    Differences in core level binding energies between atoms belonging to the same chemical species can be related to differences in their intra- and extra-atomic charge distributions, and differences in how their core holes are screened. With this in mind, we consider the charge-excess functional model (CEFM) for net atomic charges in alloys (Bruno et al 2003 Phys. Rev. Lett. 91 166401). We begin by deriving the CEFM energy function in order to elucidate the approximations which underpin this model. We thereafter consider the particular case of the CEFM in which the strengths of the 'local interactions' within all atoms are the same. We show that for binary alloys the ground state charges of this model can be expressed in terms of charge transfer between all pairs of unlike atoms analogously to the linear charge model (Magri et al 1990 Phys. Rev. B 42 11388). Hence, the model considered is a generalization of the linear charge model for alloys containing more than two chemical species. We then determine the model's unknown 'geometric factors' over a wide range of parameter space. These quantities are linked to the nature of charge screening in the model, and we illustrate that the screening becomes increasingly universal as the strength of the local interactions is increased. We then use the model to derive analytical expressions for various physical quantities, including the Madelung energy and the disorder broadening in the core level binding energies. These expressions are applied to ternary random alloys, for which it is shown that the Madelung energy and magnitude of disorder broadening are maximized at the composition at which the two species with the largest 'electronegativity difference' are equal, while the remaining species have a vanishing concentration. This result is somewhat counterintuitive with regards to the disorder broadening since it does not correspond to the composition with the highest entropy. Finally, the model is applied to CuPd and Cu

  6. Biaxial Nematic Phase in Model Bent-Core Systems

    NASA Astrophysics Data System (ADS)

    Grzybowski, Piotr; Longa, Lech

    2011-07-01

    We determine the bifurcation phase diagrams with isotropic (I), uniaxial (NU) and biaxial (NB) nematic phases for model bent-core mesogens using Onsager-type theory. The molecules comprise two or three Gay-Berne interacting ellipsoids of uniaxial and biaxial shape and a transverse central dipole. The Landau point is found to turn into an I-NB line for the three-center model with a large dipole moment. For the biaxial ellipsoids, a line of Landau points is observed even in the absence of the dipoles.

  7. Biaxial nematic phase in model bent-core systems.

    PubMed

    Grzybowski, Piotr; Longa, Lech

    2011-07-01

    We determine the bifurcation phase diagrams with isotropic (I), uniaxial (N(U)) and biaxial (N(B)) nematic phases for model bent-core mesogens using Onsager-type theory. The molecules comprise two or three Gay-Berne interacting ellipsoids of uniaxial and biaxial shape and a transverse central dipole. The Landau point is found to turn into an I-N(B) line for the three-center model with a large dipole moment. For the biaxial ellipsoids, a line of Landau points is observed even in the absence of the dipoles. PMID:21797641

  8. Uncovering Divergence of Rice Exon Junction Complex Core Heterodimer Gene Duplication Reveals Their Essential Role in Growth, Development, and Reproduction1[W

    PubMed Central

    Gong, Pichang; He, Chaoying

    2014-01-01

    The exon junction complex (EJC) plays important developmental roles in animals; however, its role in plants is not well known. Here, we show various aspects of the divergence of each duplicated MAGO NASHI (MAGO) and Y14 gene pair in rice (Oryza sativa) encoding the putative EJC core subunits that form the obligate MAGO-Y14 heterodimers. OsMAGO1, OsMAGO2, and OsY14a were constitutively expressed in all tissues, while OsY14b was predominantly expressed in embryonic tissues. OsMAGO2 and OsY14b were more sensitive to different stresses than OsMAGO1 and OsY14a, and their encoded protein pair shared 93.8% and 46.9% sequence identity, respectively. Single MAGO down-regulation in rice did not lead to any phenotypic variation; however, double gene knockdowns generated short rice plants with abnormal flowers, and the stamens of these flowers showed inhibited degradation and absorption of both endothecium and tapetum, suggesting that OsMAGO1 and OsMAGO2 were functionally redundant. OsY14a knockdowns phenocopied OsMAGO1OsMAGO2 mutants, while down-regulation of OsY14b failed to induce plantlets, suggesting the functional specialization of OsY14b in embryogenesis. OsMAGO1OsMAGO2OsY14a triple down-regulation enhanced the phenotypes of OsMAGO1OsMAGO2 and OsY14a down-regulated mutants, indicating that they exert developmental roles in the MAGO-Y14 heterodimerization mode. Modified gene expression was noted in the altered developmental pathways in these knockdowns, and the transcript splicing of UNDEVELOPED TAPETUM1 (OsUDT1), a key regulator in stamen development, was uniquely abnormal. Concomitantly, MAGO and Y14 selectively bound to the OsUDT1 premessenger RNA, suggesting that rice EJC subunits regulate splicing. Our work provides novel insights into the function of the EJC locus in growth, development, and reproduction in angiosperms and suggests a role for these genes in the adaptive evolution of cereals. PMID:24820023

  9. Testing a new Free Core Nutation empirical model

    NASA Astrophysics Data System (ADS)

    Belda, Santiago; Ferrándiz, José M.; Heinkelmann, Robert; Nilsson, Tobias; Schuh, Harald

    2016-03-01

    The Free Core Nutation (FCN) is a free mode of the Earth's rotation caused by the different material characteristics of the Earth's core and mantle. This causes the rotational axes of those layers to slightly diverge from each other, resulting in a wobble of the Earth's rotation axis comparable to nutations. In this paper we focus on estimating empirical FCN models using the observed nutations derived from the VLBI sessions between 1993 and 2013. Assuming a fixed value for the oscillation period, the time-variable amplitudes and phases are estimated by means of multiple sliding window analyses. The effects of using different a priori Earth Rotation Parameters (ERP) in the derivation of models are also addressed. The optimal choice of the fundamental parameters of the model, namely the window width and step-size of its shift, is searched by performing a thorough experimental analysis using real data. The former analyses lead to the derivation of a model with a temporal resolution higher than the one used in the models currently available, with a sliding window reduced to 400 days and a day-by-day shift. It is shown that this new model increases the accuracy of the modeling of the observed Earth's rotation. Besides, empirical models determined from USNO Finals as a priori ERP present a slightly lower Weighted Root Mean Square (WRMS) of residuals than IERS 08 C04 along the whole period of VLBI observations, according to our computations. The model is also validated through comparisons with other recognized models. The level of agreement among them is satisfactory. Let us remark that our estimates give rise to the lowest residuals and seem to reproduce the FCN signal in more detail.

  10. Quasiparticle energies and lifetimes in a metallic chain model of a tunnel junction.

    PubMed

    Szepieniec, Mark; Yeriskin, Irene; Greer, J C

    2013-04-14

    As electronics devices scale to sub-10 nm lengths, the distinction between "device" and "electrodes" becomes blurred. Here, we study a simple model of a molecular tunnel junction, consisting of an atomic gold chain partitioned into left and right electrodes, and a central "molecule." Using a complex absorbing potential, we are able to reproduce the single-particle energy levels of the device region including a description of the effects of the semi-infinite electrodes. We then use the method of configuration interaction to explore the effect of correlations on the system's quasiparticle peaks. We find that when excitations on the leads are excluded, the device's highest occupied molecular orbital and lowest unoccupied molecular orbital quasiparticle states when including correlation are bracketed by their respective values in the Hartree-Fock (Koopmans) and ΔSCF approximations. In contrast, when excitations on the leads are included, the bracketing property no longer holds, and both the positions and the lifetimes of the quasiparticle levels change considerably, indicating that the combined effect of coupling and correlation is to alter the quasiparticle spectrum significantly relative to an isolated molecule. PMID:24981526

  11. A model of tight junction function in central nervous system myelinated axons.

    PubMed

    Gow, Alexander; Devaux, Jerome

    2008-11-01

    The insulative properties of myelin sheaths in the central and peripheral nervous systems (CNS and PNS) are widely thought to derive from the high resistance and low capacitance of the constituent membranes. Although this view adequately accounts for myelin function in large diameter fibers, it poorly reflects the behavior of small fibers that are prominent in many regions of the CNS. Herein, we develop a computational model to more accurately represent conduction in small fibers. By incorporating structural features that, hitherto, have not been simulated, we demonstrate that myelin tight junctions (TJs) improve saltatory conduction by reducing current flow through the myelin, limiting axonal membrane depolarization and restraining the activation of ion channels beneath the myelin sheath. Accordingly, our simulations provide a novel view of myelin by which TJs minimize charging of the membrane capacitance and lower the membrane time constant to improve the speed and accuracy of transmission in small diameter fibers. This study establishes possible mechanisms whereby TJs affect conduction in the absence of overt perturbations to myelin architecture and may in part explain the tremor and gait abnormalities observed in Claudin 11-null mice. PMID:20102674

  12. Lattice charge models and core level shifts in disordered alloys

    NASA Astrophysics Data System (ADS)

    Underwood, T. L.; Cole, R. J.

    2013-10-01

    Differences in core level binding energies between atoms belonging to the same chemical species can be related to differences in their intra- and extra-atomic charge distributions, and differences in how their core holes are screened. With this in mind, we consider the charge-excess functional model (CEFM) for net atomic charges in alloys (Bruno et al 2003 Phys. Rev. Lett. 91 166401). We begin by deriving the CEFM energy function in order to elucidate the approximations which underpin this model. We thereafter consider the particular case of the CEFM in which the strengths of the ‘local interactions’ within all atoms are the same. We show that for binary alloys the ground state charges of this model can be expressed in terms of charge transfer between all pairs of unlike atoms analogously to the linear charge model (Magri et al 1990 Phys. Rev. B 42 11388). Hence, the model considered is a generalization of the linear charge model for alloys containing more than two chemical species. We then determine the model’s unknown ‘geometric factors’ over a wide range of parameter space. These quantities are linked to the nature of charge screening in the model, and we illustrate that the screening becomes increasingly universal as the strength of the local interactions is increased. We then use the model to derive analytical expressions for various physical quantities, including the Madelung energy and the disorder broadening in the core level binding energies. These expressions are applied to ternary random alloys, for which it is shown that the Madelung energy and magnitude of disorder broadening are maximized at the composition at which the two species with the largest ‘electronegativity difference’ are equal, while the remaining species have a vanishing concentration. This result is somewhat counterintuitive with regards to the disorder broadening since it does not correspond to the composition with the highest entropy. Finally, the model is applied to Cu

  13. Modelling the carbonation of cementitious matrixes by means of the unreacted-core model, UR-CORE

    SciTech Connect

    Castellote, M. Andrade, C.

    2008-12-15

    This paper presents a model for the carbonation of cementitious matrixes (UR-CORE). The model is based on the principles of the 'unreacted-core' systems, typical of chemical engineering processes, in which the reacted product remains in the solid as a layer of inert ash, adapted for the specific case of carbonation. Development of the model has been undertaken in three steps: 1) Establishment of the controlling step in the global carbonation rate, by using data of fractional conversion of different phases of the cementitious matrixes, obtained by the authors through neutron diffraction data experiments, and reported in [M. Castellote, C. Andrade, X. Turrillas, J. Campo, G. Cuello, Accelerated carbonation of cement pastes in situ monitored by neutron diffraction, Cem. Concr. Res. (2008), doi:10.1016/j.cemconres.2008.07.002]. 2) Then, the model has been adapted and applied to the cementitious materials using different concentrations of CO{sub 2}, with the introduction of the needed assumptions and factors. 3) Finally, the model has been validated with laboratory data at different concentrations (taken from literature) and for long term natural exposure of concretes. As a result, the model seems to be reliable enough to be applied to cementitious materials, being able to extrapolate the results from accelerated tests in any conditions to predict the rate of carbonation in natural exposure, being restricted, at present stage, to conditions with a constant relative humidity.

  14. Holomorphic solutions of the double confluent Heun equation associated with the RSJ model of the Josephson junction

    NASA Astrophysics Data System (ADS)

    Buchstaber, V. M.; Tertychnyi, S. I.

    2015-03-01

    This work is a continuation of research on a first-order nonlinear differential equation applied in the overshunted model of the Josephson junction. The approach is based on the relation between this equation and the double confluent Heun equation, which is a second-order linear homogeneous equation with two irregular singular points. We describe the conditions on the equation parameters under which its general solution is an analytic function on the Riemann sphere except at 0 and ∞. We construct an explicit basis of the solution space. One of the functions in this basis is regular everywhere except 0, and the other is regular everywhere except ∞. We show that in the framework of the RSJ model of Josephson junction dynamics, the described situation corresponds to the condition that the Shapiro step vanishes if all the solutions of the double confluent Heun equation are single-valued on the Riemann sphere without 0 and ∞.

  15. A New Global Core Plasma Model of the Plasmasphere

    NASA Astrophysics Data System (ADS)

    Gallagher, D. L.; Comfort, R. H.; Craven, P. D.

    2014-12-01

    The Global Core Plasma Model (GCPM) is the first empirical model for thermal inner magnetospheric plasma designed to integrate previous models and observations into a global, continuous in value and gradient, representation of typical total densities. New information about the plasmasphere, in particular, makes possible significant improvement. The IMAGE Mission Radio Plasma Imager (RPI) has obtained the first observations of total plasma densities along magnetic field lines in the plasmasphere and polar cap. Dynamics Explorer 1 Retarding Ion Mass Spectrometer (RIMS) has provided densities and temperatures in the plasmasphere for five ion species. These and other works enable a new more robust empirical model of thermal in the inner magnetosphere that will be presented.

  16. Josephson junction

    DOEpatents

    Wendt, Joel R.; Plut, Thomas A.; Martens, Jon S.

    1995-01-01

    A novel method for fabricating nanometer geometry electronic devices is described. Such Josephson junctions can be accurately and reproducibly manufactured employing photolithographic and direct write electron beam lithography techniques in combination with aqueous etchants. In particular, a method is described for manufacturing planar Josephson junctions from high temperature superconducting material.

  17. Josephson junction

    DOEpatents

    Wendt, J.R.; Plut, T.A.; Martens, J.S.

    1995-05-02

    A novel method for fabricating nanometer geometry electronic devices is described. Such Josephson junctions can be accurately and reproducibly manufactured employing photolithographic and direct write electron beam lithography techniques in combination with aqueous etchants. In particular, a method is described for manufacturing planar Josephson junctions from high temperature superconducting material. 10 figs.

  18. Bimetallic junctions

    NASA Technical Reports Server (NTRS)

    Arcella, F. G.; Lessmann, G. G.; Lindberg, R. A. (Inventor)

    1977-01-01

    The formation of voids through interdiffusion in bimetallic welded structures exposed to high operating temperatures is inhibited by utilizing an alloy of the parent materials in the junction of the parent materials or by preannealing the junction at an ultrahigh temperature. These methods are also used to reduce the concentration gradient of a hardening agent.

  19. The Candy Wrapper Velocity Model for the Earth's Inner Core

    NASA Astrophysics Data System (ADS)

    Mattesini, M.

    2014-12-01

    Recent global expansion of seismic data motivated a number of seismological studies of the Earth's inner core that proposed the existence of increasingly complex structure and anisotropy. In the meantime, new hypotheses of dynamic mechanisms have been put forward to interpret seismological results. Here, the nature of hemispherical dichotomy and anisotropy is re-investigated by bridging the observations of PKP(bc-df) differential travel-times with the iron bcc/hcp elastic properties computed from first-principles methods.The Candy Wrapper velocity model introduced here accounts for a dynamic picture of the inner core (i.e., the eastward drift of material), where different iron crystal shapes can be stabilized at the two hemispheres. We show that seismological data are best explained by a rather complicated, mosaic-like, structure of the inner core, where well-separated patches of different iron crystals compose the anisotropic western hemispherical region, and a conglomerate of almost indistinguishable iron phases builds-up the weakly anisotropic eastern side.

  20. Modelling dislocation cores in MgSiO3 perovskite

    NASA Astrophysics Data System (ADS)

    Cordier, P.; Carrez, P.; Gouriet, K.; Kraych, A.

    2012-12-01

    MgSiO3 perovskite is the most abundant mineral of the Earth's lower mantle (i.e. between 700 and 2900 km depth) and accounts for half of Earth's mass. At lower mantle pressures (25-135 GPa) MgSiO3 crystallises in a distorted (orthorhombic) perovskite structure (described in the following using the Pbnm space group). In this structure, SiO6 octahedra are tilted with tilt angles increasing with increasing pressure. Since it is very difficult to perform deformation experiments under the extreme P, T conditions of the lower mantle, little is known about plastic deformation of MgSiO3 perovskite and its slip systems are still a matter of debate. To overcome this difficulty, we model dislocation core structures in this mineral taking into account the influence of pressure. In this study, we focus on dislocation core structures of dislocations with [100] and [010] Burgers vectors (which derive from <110> Burgers vectors of the underlying pseudo-cubic structure). Atomistic calculations are performed using pair-wise potentials as implemented in the LAMMPS code. The choice of potentials was initially validated by comparing generalized stacking fault (GSF) energies to similar calculations performed with the density functional theory (DFT). The core structures of screw dislocations are calculated using two independent methods. The first one is based on Peierls-Nabarro-Galerkin simulations involving GSF as an input. Direct calculations have also bee performed using cluster approach. It turns out that screw dislocations with [100] Burgers vector are characterised by a core mostly spread in the (010) plane. The core exhibits two edge-sharing octahedra in a configuration very similar to that modelled in SrTiO3 cubic perovskite. The structure of [010] screw dislocations is more complex with dissociation into two, non-collinear partial dislocations with a significant non-screw component. Both dislocations exhibit high Peierls stresses. This illustrates the effect of orthorhombic

  1. IR Emission Models from High-Mass Star Formation Cores

    NASA Astrophysics Data System (ADS)

    Campbell, M. F.; Deutsch, L. K.

    2001-12-01

    Recognition that high-mass stars form only in clusters has motivated us to make new radiative transfer models for infrared emission from compact, dense cloud cores surrounding very young high-mass stars. We assume outer cloud radii are limited by the formation of stars in clusters to 0.1 pc. Since there is a high efficiency of conversion of gas into stars within clusters, we assumed the mass of gas and dust in the cloud models is equal or less than the mass of the central star. We assumed Draine and Lee (1984) dust properties with 100:1 gas to dust mass ratio, and used the Egan, Leung, and Spagna (1988) radiative transfer code. The central star in all models is an O8 ZAMS type at 1700 pc distance (the distance to NGC6334). The dust emitting clouds were assumed to have inner cavities of radius 0.006 pc, just outside an ultracompact HII region. Density distributions were taken as uniform or proportional to r-3/2. Except for the highest mass clouds, the models showed the 10 micron silicate feature in emission rather than self absorption. All models' spectral energy distributions peak shortward of 50 microns. The lack of silicate self absorption and the SEDs peaking shortward of 50 microns are apparently due to the small size of these models. In order to match observed silicate absorption in UCHIIs, an external cold absorbing component must be added to the models. The results suggest that individual high mass star-formation cores should be searched for in mid-infrared rather than far-infrared wavelengths, and that SEDs which peak in the far- infrared are at least partly produced by separate, larger outer cloud envelopes. Draine, B. T. & Lee, H. M. 1984 ApJ, 285, 89; Egan, M.P., Leung, C.M., & Spagna, G.F, Jr. 1988 Comput. Phys. Comm., 48, 271

  2. Mix and match: Investigating heteromeric and heterotypic gap junction channels in model systems and native tissues

    PubMed Central

    Koval, Michael; Molina, Samuel A.; Burt, Janis M.

    2014-01-01

    This review is based in part on a roundtable discussion session: “Physiological roles for heterotypic/heteromeric channels” at the 2013 International Gap Junction Conference (IGJC 2013) in Charleston, South Carolina. It is well recognized that multiple connexins can specifically co-assemble to form mixed gap junction channels with unique properties as a means to regulate intercellular communication. Compatibility determinants for both heteromeric and heterotypic gap junction channel formation have been identified and associated with specific connexin amino acid motifs. Hetero-oligomerization is also a regulated process; differences in connexin quality control and monomer stability are likely to play integral roles to control interactions between compatible connexins. Gap junctions in oligodendrocyte:astrocyte communication and in the cardiovascular system have emerged as key systems where heterotypic and heteromeric channels have unique physiologic roles. There are several methodologies to study heteromeric and heterotypic channels that are best applied to either heterologous expression systems, native tissues or both. There remains a need to use and develop different experimental approaches in order to understand the prevalence and roles for mixed gap junction channels in human physiology. PMID:24561196

  3. Ab-Initio Shell Model with a Core

    SciTech Connect

    Lisetskiy, A F; Barrett, B R; Kruse, M; Navratil, P; Stetcu, I; Vary, J P

    2008-06-04

    We construct effective 2- and 3-body Hamiltonians for the p-shell by performing 12{h_bar}{Omega} ab initio no-core shell model (NCSM) calculations for A=6 and 7 nuclei and explicitly projecting the many-body Hamiltonians onto the 0{h_bar}{Omega} space. We then separate these effective Hamiltonians into 0-, 1- and 2-body contributions (also 3-body for A=7) and analyze the systematic behavior of these different parts as a function of the mass number A and size of the NCSM basis space. The role of effective 3- and higher-body interactions for A > 6 is investigated and discussed.

  4. Computational modeling for hexcan failure under core distruptive accidental conditions

    SciTech Connect

    Sawada, T.; Ninokata, H.; Shimizu, A.

    1995-09-01

    This paper describes the development of computational modeling for hexcan wall failures under core disruptive accident conditions of fast breeder reactors. A series of out-of-pile experiments named SIMBATH has been analyzed by using the SIMMER-II code. The SIMBATH experiments were performed at KfK in Germany. The experiments used a thermite mixture to simulate fuel. The test geometry of SIMBATH ranged from single pin to 37-pin bundles. In this study, phenomena of hexcan wall failure found in a SIMBATH test were analyzed by SIMMER-II. Although the original model of SIMMER-II did not calculate any hexcan failure, several simple modifications made it possible to reproduce the hexcan wall melt-through observed in the experiment. In this paper the modifications and their significance are discussed for further modeling improvements.

  5. Astrocytic gap junctional networks suppress cellular damage in an in vitro model of ischemia

    SciTech Connect

    Shinotsuka, Takanori; Yasui, Masato; Nuriya, Mutsuo

    2014-02-07

    Highlights: • Astrocytes exhibit characteristic changes in [Ca{sup 2+}]{sub i} under OGD. • Astrocytic [Ca{sup 2+}]{sub i} increase is synchronized with a neuronal anoxic depolarization. • Gap junctional couplings protect neurons as well as astrocytes during OGD. - Abstract: Astrocytes play pivotal roles in both the physiology and the pathophysiology of the brain. They communicate with each other via extracellular messengers as well as through gap junctions, which may exacerbate or protect against pathological processes in the brain. However, their roles during the acute phase of ischemia and the underlying cellular mechanisms remain largely unknown. To address this issue, we imaged changes in the intracellular calcium concentration ([Ca{sup 2+}]{sub i}) in astrocytes in mouse cortical slices under oxygen/glucose deprivation (OGD) condition using two-photon microscopy. Under OGD, astrocytes showed [Ca{sup 2+}]{sub i} oscillations followed by larger and sustained [Ca{sup 2+}]{sub i} increases. While the pharmacological blockades of astrocytic receptors for glutamate and ATP had no effect, the inhibitions of gap junctional intercellular coupling between astrocytes significantly advanced the onset of the sustained [Ca{sup 2+}]{sub i} increase after OGD exposure. Interestingly, the simultaneous recording of the neuronal membrane potential revealed that the onset of the sustained [Ca{sup 2+}]{sub i} increase in astrocytes was synchronized with the appearance of neuronal anoxic depolarization. Furthermore, the blockade of gap junctional coupling resulted in a concurrent faster appearance of neuronal depolarizations, which remain synchronized with the sustained [Ca{sup 2+}]{sub i} increase in astrocytes. These results indicate that astrocytes delay the appearance of the pathological responses of astrocytes and neurons through their gap junction-mediated intercellular network under OGD. Thus, astrocytic gap junctional networks provide protection against tissue damage

  6. Gap Junctions

    PubMed Central

    Nielsen, Morten Schak; Axelsen, Lene Nygaard; Sorgen, Paul L.; Verma, Vandana; Delmar, Mario; Holstein-Rathlou, Niels-Henrik

    2013-01-01

    Gap junctions are essential to the function of multicellular animals, which require a high degree of coordination between cells. In vertebrates, gap junctions comprise connexins and currently 21 connexins are known in humans. The functions of gap junctions are highly diverse and include exchange of metabolites and electrical signals between cells, as well as functions, which are apparently unrelated to intercellular communication. Given the diversity of gap junction physiology, regulation of gap junction activity is complex. The structure of the various connexins is known to some extent; and structural rearrangements and intramolecular interactions are important for regulation of channel function. Intercellular coupling is further regulated by the number and activity of channels present in gap junctional plaques. The number of connexins in cell-cell channels is regulated by controlling transcription, translation, trafficking, and degradation; and all of these processes are under strict control. Once in the membrane, channel activity is determined by the conductive properties of the connexin involved, which can be regulated by voltage and chemical gating, as well as a large number of posttranslational modifications. The aim of the present article is to review our current knowledge on the structure, regulation, function, and pharmacology of gap junctions. This will be supported by examples of how different connexins and their regulation act in concert to achieve appropriate physiological control, and how disturbances of connexin function can lead to disease. © 2012 American Physiological Society. Compr Physiol 2:1981-2035, 2012. PMID:23723031

  7. A compact model for magnetic tunnel junction (MTJ) switched by thermally assisted Spin transfer torque (TAS + STT)

    NASA Astrophysics Data System (ADS)

    Zhao, Weisheng; Duval, Julien; Klein, Jacques-Olivier; Chappert, Claude

    2011-12-01

    Thermally assisted spin transfer torque [TAS + STT] is a new switching approach for magnetic tunnel junction [MTJ] nanopillars that represents the best trade-off between data reliability, power efficiency and density. In this paper, we present a compact model for MTJ switched by this approach, which integrates a number of physical models such as temperature evaluation and STT dynamic switching models. Many experimental parameters are included directly to improve the simulation accuracy. It is programmed in the Verilog-A language and compatible with the standard IC CAD tools, providing an easy parameter configuration interface and allowing high-speed co-simulation of hybrid MTJ/CMOS circuits.

  8. MCNP/MCNPX model of the annular core research reactor.

    SciTech Connect

    DePriest, Kendall Russell; Cooper, Philip J.; Parma, Edward J., Jr.

    2006-10-01

    Many experimenters at the Annular Core Research Reactor (ACRR) have a need to predict the neutron/gamma environment prior to testing. In some cases, the neutron/gamma environment is needed to understand the test results after the completion of an experiment. In an effort to satisfy the needs of experimenters, a model of the ACRR was developed for use with the Monte Carlo N-Particle transport codes MCNP [Br03] and MCNPX [Wa02]. The model contains adjustable safety, transient, and control rods, several of the available spectrum-modifying cavity inserts, and placeholders for experiment packages. The ACRR model was constructed such that experiment package models can be easily placed in the reactor after being developed as stand-alone units. An addition to the 'standard' model allows the FREC-II cavity to be included in the calculations. This report presents the MCNP/MCNPX model of the ACRR. Comparisons are made between the model and the reactor for various configurations. Reactivity worth curves for the various reactor configurations are presented. Examples of reactivity worth calculations for a few experiment packages are presented along with the measured reactivity worth from the reactor test of the experiment packages. Finally, calculated neutron/gamma spectra are presented.

  9. Electromagnetic model for near-field microwave microscope with atomic resolution: Determination of tunnel junction impedance

    SciTech Connect

    Reznik, Alexander N.

    2014-08-25

    An electrodynamic model is proposed for the tunneling microwave microscope with subnanometer space resolution as developed by Lee et al. [Appl. Phys. Lett. 97, 183111 (2010)]. Tip-sample impedance Z{sub a} was introduced and studied in the tunneling and non-tunneling regimes. At tunneling breakdown, the microwave current between probe and sample flows along two parallel channels characterized by impedances Z{sub p} and Z{sub t} that add up to form overall impedance Z{sub a}. Quantity Z{sub p} is the capacitive impedance determined by the near field of the probe and Z{sub t} is the impedance of the tunnel junction. By taking into account the distance dependences of effective tip radius r{sub 0}(z) and tunnel resistance R{sub t}(z) = Re[Z{sub t}(z)], we were able to explain the experimentally observed dependences of resonance frequency f{sub r}(z) and quality factor Q{sub L}(z) of the microscope. The obtained microwave resistance R{sub t}(z) and direct current tunnel resistance R{sub t}{sup dc}(z) exhibit qualitatively similar behavior, although being largely different in both magnitude and the characteristic scale of height dependence. Interpretation of the microwave images of the atomic structure of test samples proved possible by taking into account the inductive component of tunnel impedance ImZ{sub t} = ωL{sub t}. Relation ωL{sub t}/R{sub t} ≈ 0.235 was obtained.

  10. Recent Developments in No-Core Shell-Model Calculations

    SciTech Connect

    Navratil, P; Quaglioni, S; Stetcu, I; Barrett, B R

    2009-03-20

    We present an overview of recent results and developments of the no-core shell model (NCSM), an ab initio approach to the nuclear many-body problem for light nuclei. In this aproach, we start from realistic two-nucleon or two- plus three-nucleon interactions. Many-body calculations are performed using a finite harmonic-oscillator (HO) basis. To facilitate convergence for realistic inter-nucleon interactions that generate strong short-range correlations, we derive effective interactions by unitary transformations that are tailored to the HO basis truncation. For soft realistic interactions this might not be necessary. If that is the case, the NCSM calculations are variational. In either case, the ab initio NCSM preserves translational invariance of the nuclear many-body problem. In this review, we, in particular, highlight results obtained with the chiral two- plus three-nucleon interactions. We discuss efforts to extend the applicability of the NCSM to heavier nuclei and larger model spaces using importance-truncation schemes and/or use of effective interactions with a core. We outline an extension of the ab initio NCSM to the description of nuclear reactions by the resonating group method technique. A future direction of the approach, the ab initio NCSM with continuum, which will provide a complete description of nuclei as open systems with coupling of bound and continuum states is given in the concluding part of the review.

  11. Development of CFD model for augmented core tripropellant rocket engine

    NASA Astrophysics Data System (ADS)

    Jones, Kenneth M.

    1994-10-01

    The Space Shuttle era has made major advances in technology and vehicle design to the point that the concept of a single-stage-to-orbit (SSTO) vehicle appears more feasible. NASA presently is conducting studies into the feasibility of certain advanced concept rocket engines that could be utilized in a SSTO vehicle. One such concept is a tripropellant system which burns kerosene and hydrogen initially and at altitude switches to hydrogen. This system will attain a larger mass fraction because LOX-kerosene engines have a greater average propellant density and greater thrust-to-weight ratio. This report describes the investigation to model the tripropellant augmented core engine. The physical aspects of the engine, the CFD code employed, and results of the numerical model for a single modular thruster are discussed.

  12. Systems Modeling for Crew Core Body Temperature Prediction Postlanding

    NASA Technical Reports Server (NTRS)

    Cross, Cynthia; Ochoa, Dustin

    2010-01-01

    The Orion Crew Exploration Vehicle, NASA s latest crewed spacecraft project, presents many challenges to its designers including ensuring crew survivability during nominal and off nominal landing conditions. With a nominal water landing planned off the coast of San Clemente, California, off nominal water landings could range from the far North Atlantic Ocean to the middle of the equatorial Pacific Ocean. For all of these conditions, the vehicle must provide sufficient life support resources to ensure that the crew member s core body temperatures are maintained at a safe level prior to crew rescue. This paper will examine the natural environments, environments created inside the cabin and constraints associated with post landing operations that affect the temperature of the crew member. Models of the capsule and the crew members are examined and analysis results are compared to the requirement for safe human exposure. Further, recommendations for updated modeling techniques and operational limits are included.

  13. LOW MACH NUMBER MODELING OF CORE CONVECTION IN MASSIVE STARS

    SciTech Connect

    Gilet, C.; Almgren, A. S.; Bell, J. B.; Nonaka, A.; Woosley, S. E.; Zingale, M.

    2013-08-20

    This work presents three-dimensional simulations of core convection in a 15 M{sub Sun} star halfway through its main sequence lifetime. To perform the necessary long-time calculations, we use the low Mach number code MAESTRO, with initial conditions taken from a one-dimensional stellar model. We first identify several key factors that the one-dimensional initial model must satisfy to ensure efficient simulation of the convection process. We then use the three-dimensional simulations to examine the effects of two common modeling choices on the resulting convective flow: using a fixed composition approximation and using a reduced domain size. We find that using a fixed composition model actually increases the computational cost relative to using the full multi-species model because the fixed composition system takes longer to reach convection that is in a quasi-static state. Using a reduced (octant rather than full sphere) simulation domain yields flow with statistical properties that are within a factor of two of the full sphere simulation values. Both the octant and full sphere simulations show similar mixing across the convection zone boundary that is consistent with the turbulent entrainment model. However, the global character of the flow is distinctly different in the octant simulation, showing more rapid changes in the large-scale structure of the flow and thus a more isotropic flow on average.

  14. Shrinking-core modeling of binary chromatographic breakthrough.

    PubMed

    Traylor, Steven J; Xu, Xuankuo; Lenhoff, Abraham M

    2011-04-22

    Most chromatographic processes involve separation of two or more species, so development of a simple, accurate multicomponent chromatographic model can be valuable for improving process efficiency and yield. We consider the case of breakthrough chromatography, which has been considered in great depth for single-component modeling but to a much more limited degree for multicomponent breakthrough. We use the shrinking core model, which provides a reasonable approximation of particle uptake for proteins under strong binding conditions. Analytical column solutions for single-component systems are extended here to predict binary breakthrough chromatographic behavior for conditions under which the external transport resistance is negligible. Analytical results for the location and profile of displacement effects and expected breakthrough curves are derived for limiting cases. More generally, straightforward numerical results have also been obtained through simultaneous solution of a set of simple ordinary differential equations. Exploration of the model parameter space yields results consistent with theoretical expectations. Additionally, both analytical and numerical predictions compare favorably with experimental column breakthrough data for lysozyme-cytochrome c mixtures on the strong cation exchanger SP Sepharose FF. Especially significant is the ability of the model to predict experimentally observed displacement profiles of the more weakly adsorbed species (in this case cytochrome c). The ability to model displacement behavior using simple analytical and numerical techniques is a significant improvement over current methods. PMID:21411102

  15. Baryon-Baryon Interactions ---Nijmegen Extended-Soft-Core Models---

    NASA Astrophysics Data System (ADS)

    Rijken, T. A.; Nagels, M. M.; Yamamoto, Y.

    We review the Nijmegen extended-soft-core (ESC) models for the baryon-baryon (BB) interactions of the SU(3) flavor-octet of baryons (N, Lambda, Sigma, and Xi). The interactions are basically studied from the meson-exchange point of view, in the spirit of the Yukawa-approach to the nuclear force problem [H. Yukawa, ``On the interaction of Elementary Particles I'', Proceedings of the Physico-Mathematical Society of Japan 17 (1935), 48], using generalized soft-core Yukawa-functions. These interactions are supplemented with (i) multiple-gluon-exchange, and (ii) structural effects due to the quark-core of the baryons. We present in some detail the most recent extended-soft-core model, henceforth referred to as ESC08, which is the most complete, sophisticated, and successful interaction-model. Furthermore, we discuss briefly its predecessor the ESC04-model [Th. A. Rijken and Y. Yamamoto, Phys. Rev. C 73 (2006), 044007; Th. A. Rijken and Y. Yamamoto, Ph ys. Rev. C 73 (2006), 044008; Th. A. Rijken and Y. Yamamoto, nucl-th/0608074]. For the soft-core one-boson-exchange (OBE) models we refer to the literature [Th. A. Rijken, in Proceedings of the International Conference on Few-Body Problems in Nuclear and Particle Physics, Quebec, 1974, ed. R. J. Slobodrian, B. Cuec and R. Ramavataram (Presses Universitè Laval, Quebec, 1975), p. 136; Th. A. Rijken, Ph. D. thesis, University of Nijmegen, 1975; M. M. Nagels, Th. A. Rijken and J. J. de Swart, Phys. Rev. D 17 (1978), 768; P. M. M. Maessen, Th. A. Rijken and J. J. de Swart, Phys. Rev. C 40 (1989), 2226; Th. A. Rijken, V. G. J. Stoks and Y. Yamamoto, Phys. Rev. C 59 (1999), 21; V. G. J. Stoks and Th. A. Rijken, Phys. Rev. C 59 (1999), 3009]. All ingredients of these latter models are also part of ESC08, and so a description of ESC08 comprises all models so far in principle. The extended-soft-core (ESC) interactions consist of local- and non-local-potentials due to (i) one-boson-exchanges (OBE), which are the members of nonets of

  16. Impaired Astrocytic Gap Junction Coupling and Potassium Buffering in a Mouse Model of Tuberous Sclerosis Complex

    PubMed Central

    Xu, Lin; Zeng, Ling-Hui; Wong, Michael

    2009-01-01

    Abnormalities in astrocytes occur in the brains of patients with Tuberous Sclerosis Complex (TSC) and may contribute to the pathogenesis of neurological dysfunction in this disease. Here, we report that knock-out mice with Tsc1 gene inactivation in glia (Tsc1GFAPCKO mice) exhibit decreased expression of the astrocytic connexin protein, Cx43, and an associated impairment in gap junction coupling between astrocytes. Correspondingly, hippocampal slices from Tsc1GFAPCKO mice have increased extracellular potassium concentration in response to stimulation. This impaired potassium buffering can be attributed to abnormal gap junction coupling, as a gap junction inhibitor elicits an additional increase in potassium concentration in control, but not Tsc1GFAPCKO slices. Furthermore, treatment with a mammalian target of rapamycin inhibitor reverses the deficient Cx43 expression and impaired potassium buffering. These findings suggest that Tsc1 inactivation in astrocytes causes defects in astrocytic gap junction coupling and potassium clearance, which may contribute to epilepsy in Tsc1GFAPCKO mice. PMID:19385061

  17. Beyond the Lorentzian Model in Quantum Transport: Energy-Dependent Resonance Broadening in Molecular Junctions

    NASA Astrophysics Data System (ADS)

    Liu, Zhenfei; Neaton, Jeffrey B.

    In quantum transport calculations, transmission functions of molecular junctions, as well as spectral functions of metal-organic interfaces, often feature peaks originating from molecular resonances. These resonance peaks are often assumed to be Lorentzian, with an energy-independent broadening function Γ. However, in the general case, the wide-band-limit breaks down, and the Lorentzian approximation is no longer valid. Here, we develop a new energy-dependent broadening function Γ (E) , based on diagonalization of non-Hermitian matrices within a non-equilbrium Green's function (NEGF) formalism. As defined, Γ (E) can describe resonances of non-Lorentzian nature and can be decomposed into components associated with the left and right leads, respectively; and it is particularly useful in understanding transport properties in terms of molecular orbitals in asymmetric junctions. We compute this quantity via an ab initio NEGF approach based on density functional theory and illustrate its utility with several junctions of experimental relevance, including recent work on rectification in Au-graphite junctions. This work is supported by the DOE, and computational resources are provided by NERSC.

  18. Stochastic 16-state model of voltage gating of gap-junction channels enclosing fast and slow gates.

    PubMed

    Paulauskas, Nerijus; Pranevicius, Henrikas; Mockus, Jonas; Bukauskas, Feliksas F

    2012-06-01

    Gap-junction (GJ) channels formed of connexin (Cx) proteins provide a direct pathway for electrical and metabolic cell-cell interaction. Each hemichannel in the GJ channel contains fast and slow gates that are sensitive to transjunctional voltage (Vj). We developed a stochastic 16-state model (S16SM) that details the operation of two fast and two slow gates in series to describe the gating properties of homotypic and heterotypic GJ channels. The operation of each gate depends on the fraction of Vj that falls across the gate (VG), which varies depending on the states of three other gates in series, as well as on parameters of the fast and slow gates characterizing 1), the steepness of each gate's open probability on VG; 2), the voltage at which the open probability of each gate equals 0.5; 3), the gating polarity; and 4), the unitary conductances of the gates and their rectification depending on VG. S16SM allows for the simulation of junctional current dynamics and the dependence of steady-state junctional conductance (gj,ss) on Vj. We combined global coordinate optimization algorithms with S16SM to evaluate the gating parameters of fast and slow gates from experimentally measured gj,ss-Vj dependencies in cells expressing different Cx isoforms and forming homotypic and/or heterotypic GJ channels. PMID:22713562

  19. Stochastic 16-State Model of Voltage Gating of Gap-Junction Channels Enclosing Fast and Slow Gates

    PubMed Central

    Paulauskas, Nerijus; Pranevicius, Henrikas; Mockus, Jonas; Bukauskas, Feliksas F.

    2012-01-01

    Gap-junction (GJ) channels formed of connexin (Cx) proteins provide a direct pathway for electrical and metabolic cell-cell interaction. Each hemichannel in the GJ channel contains fast and slow gates that are sensitive to transjunctional voltage (Vj). We developed a stochastic 16-state model (S16SM) that details the operation of two fast and two slow gates in series to describe the gating properties of homotypic and heterotypic GJ channels. The operation of each gate depends on the fraction of Vj that falls across the gate (VG), which varies depending on the states of three other gates in series, as well as on parameters of the fast and slow gates characterizing 1), the steepness of each gate's open probability on VG; 2), the voltage at which the open probability of each gate equals 0.5; 3), the gating polarity; and 4), the unitary conductances of the gates and their rectification depending on VG. S16SM allows for the simulation of junctional current dynamics and the dependence of steady-state junctional conductance (gj,ss) on Vj. We combined global coordinate optimization algorithms with S16SM to evaluate the gating parameters of fast and slow gates from experimentally measured gj,ss-Vj dependencies in cells expressing different Cx isoforms and forming homotypic and/or heterotypic GJ channels. PMID:22713562

  20. The Geological information and modelling Thematic Core Service of EPOS

    NASA Astrophysics Data System (ADS)

    Robida, François; Wächter, Joachim; Tulstrup, Jørgen; Lorenz, Henning; Carter, Mary; Cipolloni, Carlo; Morel, Olivier

    2016-04-01

    Geological data and models are important assets for the EPOS community. The Geological information and modelling Thematic Core Service of EPOS is being designed and will be implemented in an efficient and sustainable access system for geological multi-scale data assets for EPOS through the integration of distributed infrastructure components (nodes) of geological surveys, research institutes and the international drilling community (ICDP/IODP). The TCS will develop and take benefit of the synergy between the existing data infrastructures of the Geological Surveys of Europe (EuroGeoSurveys / OneGeology-Europe / EGDI) and of the large amount of information produced by the research organisations. These nodes will offer a broad range of resources including: geological maps, borehole data, geophysical data (seismic data, borehole log data), archived information on physical material (samples, cores), geochemical and other analyses of rocks, soils and minerals, and Geological models (3D, 4D). The services will be implemented on international standards (such as INSPIRE, IUGS/CGI, OGC, W3C, ISO) in order to guarantee their interoperability with other EPOS TCS as well as their compliance with INSPIRE European Directive or international initiatives (such as OneGeology). This will provide future virtual research environments with means to facilitate the use of existing information for future applications. In addition, workflows will be established that allow the integration of other existing and new data and applications. Processing and the use of simulation and visualization tools will subsequently support the integrated analysis and characterization of complex subsurface structures and their inherent dynamic processes. This will in turn aid in the overall understanding of complex multi-scale geo-scientific questions. This TCS will work alongside other EPOS TCSs to create an efficient and comprehensive multidisciplinary research platform for the Earth Sciences in Europe.

  1. The Geological information and modelling Thematic Core Service of EPOS

    NASA Astrophysics Data System (ADS)

    Robida, François; Wächter, Joachim; Tulstrup, Jørgen; Lorenz, Henning; Carter, Mary; Cipolloni, Carlo

    2015-04-01

    Geological data and models are important assets for the EPOS community. The Geological information and modelling Thematic Core Service of EPOS will be designed and implemented in an efficient and sustainable access system for geological multi-scale data assets for EPOS through the integration of distributed infrastructure components (nodes) of geological surveys, research institutes and the international drilling community (ICDP) . The TCS will develop and take benefit of the synergy between the existing data infrastructures of the Geological Surveys of Europe (EuroGeoSurveys / OneGeology-Europe / EGDI) and on the large amount of information produced by the research organisations. These nodes will offer a broad range of resources including: digitised geological maps, borehole data, geophysical data (seismic data, borehole log data), archived information on physical material (samples, cores), geochemical and other analyses of rocks, soils and minerals, and Geological models (3D, 4D). The services will be implemented on international standards (such as INSPIRE, IUGS/CGI, OGC, W3C, ISO) in order to guarantee their interoperability with other EPOS TCS as well as their compliance with INSPIRE European Directive or international initiatives (such as OneGeology). This will provide future virtual research environments with means to facilitate the use of existing information for future applications. In addition, workflows will be established that allow the integration of other existing and new data and applications. Processing and the use of simulation and visualization tools will subsequently support the integrated analysis and characterization of complex subsurface structures and their inherent dynamic processes. This will in turn aid in the overall understanding of complex multi-scale geo-scientific questions. This TCS will work alongside other EPOS TCSs to create an efficient and comprehensive multidisciplinary research platform for the Earth Sciences in Europe.

  2. An analytical model of eddy current ferrite-core probes

    NASA Astrophysics Data System (ADS)

    Lu, Y.; Bowler, J. R.

    2012-05-01

    An analytical model of an axisymmetric eddy current probe with a cylindrical ferrite core above a layered conductive half-space is developed. Initially we consider the magnetic vector potential of a circular filament coaxial with a ferrite core over a layered conducting half-space. The principle of superposition is then used to derive close-form expressions for both the electromagnetic field and the impedance of a coil from the filament field. Rather than locating the probe in infinite space, it is confined coaxially within a circularly cylindrical boundary on which the vector potential field is zero. The radius of this artificial boundary is large in order to ensure that does not interfere substantially with the field near the probe. By using a truncated region in this way, the vector potential in the probe region can be expanded as a series rather than an integral form. Thus the solution of the problem amounts to finding the expansion coeefficients in the series. The numerical predictions of probe impedance have been compared with experimental data showing good agreement.

  3. Hydrodynamic models of AGN feedback in cooling core clusters

    NASA Astrophysics Data System (ADS)

    Vernaleo, John C.

    X-ray observations show that the Intra Cluster Medium (ICM) in many galaxy clusters is cooling at a rapid rate, often to the point that it should have radiated away all of its energy in less than the age of the cluster. There is however a very clear lack of enough cool end products of this gas in the centers of the clusters. Energetic arguments indicate that Active Galactic Nuclei (AGN) should be capable of heating the inner regions of clusters enough to offset the radiative cooling; truncating massive galaxy formation and solving the cooling flow problem. We present three sets of high resolution, ideal hydrodynamic simulations with the ZEUS code to test this AGN heating paradigm. For the first set of simulations, we study the dependence of the interaction between the AGN jets and the ICM on the parameters of the jets themselves. We present a parameter survey of two-dimensional (axisymmetric) models of back-to-back jets injected into a cluster atmosphere. We follow the passive evolution of the resulting structures. These simulations fall into roughly two classes, cocoon-bounded and non-cocoon bounded. We find that the cocoon-bounded sources inject significantly more entropy into the core regions of the ICM atmosphere, even though the efficiency with which the energy is thermalized is independent of the morphological class. In all cases, a large fraction of the energy injected by the jet ends up as gravitational potential energy due to the expansion of the atmosphere. For the second set, we present three-dimensional simulations of jetted AGN that act in response to cooling-mediated accretion of an ICM atmosphere. We find that our models are incapable of producing a long term balance of heating and cooling; catastrophic cooling can be delayed by the jet action but inevitably takes hold. At the heart of the failure of these models is the formation of a low density channel through which the jet can freely flow, carrying its energy out of the cooling core. Finally, we

  4. A Transient Diffusion Model Yields Unitary Gap Junctional Permeabilities from Images of Cell-to-Cell Fluorescent Dye Transfer Between Xenopus Oocytes

    PubMed Central

    Nitsche, Johannes M.; Chang, Hou-Chien; Weber, Paul A.; Nicholson, Bruce J.

    2004-01-01

    As ubiquitous conduits for intercellular transport and communication, gap junctional pores have been the subject of numerous investigations aimed at elucidating the molecular mechanisms underlying permeability and selectivity. Dye transfer studies provide a broadly useful means of detecting coupling and assessing these properties. However, given evidence for selective permeability of gap junctions and some anomalous correlations between junctional electrical conductance and dye permeability by passive diffusion, the need exists to give such studies a more quantitative basis. This article develops a detailed diffusion model describing experiments (reported separately) involving transport of fluorescent dye from a “donor” region to an “acceptor” region within a pair of Xenopus oocytes coupled by gap junctions. Analysis of transport within a single oocyte is used to determine the diffusion and binding characteristics of the cellular cytoplasm. Subsequent double-cell calculations then yield the intercellular junction permeability, which is translated into a single-channel permeability using concomitant measurements of intercellular conductance, and known single-channel conductances of gap junctions made up of specific connexins, to count channels. The preceding strategy, combined with use of a graded size series of Alexa dyes, permits a determination of absolute values of gap junctional permeability as a function of dye size and connexin type. Interpretation of the results in terms of pore theory suggests significant levels of dye-pore affinity consistent with the expected order of magnitude of typical (e.g., van der Waals) intermolecular attractions. PMID:15041648

  5. A New Global Core Plasma Model of the Plasmasphere

    NASA Technical Reports Server (NTRS)

    Gallagher, D. L.; Comfort, R. H.; Craven, P. D.

    2014-01-01

    The Global Core Plasma Model (GCPM) is the first empirical model for thermal inner magnetospheric plasma designed to integrate previous models and observations into a continuous in value and gradient representation of typical total densities. New information about the plasmasphere, in particular, make possible significant improvement. The IMAGE Mission Radio Plasma Imager (RPI) has obtained the first observations of total plasma densities along magnetic field lines in the plasmasphere and polar cap. Dynamics Explorer 1 Retarding Ion Mass Spectrometer (RIMS) has provided densities in temperatures in the plasmasphere for 5 ion species. These and other works enable a new more detailed empirical model of thermal in the inner magnetosphere that will be presented. Specifically shown here are the inner-plasmasphere RIMS measurements, radial fits to densities and temperatures for H(+), He(+), He(++), O(+), and O(+) and the error associated with these initial simple fits. Also shown are more subtle dependencies on the f10.7 P-value (see Richards et al. [1994]).

  6. Epithelial Junction Opener Improves Oncolytic Adenovirus Therapy in Mouse Tumor Models.

    PubMed

    Yumul, Roma; Richter, Maximilian; Lu, Zhuo-Zhuang; Saydaminova, Kamola; Wang, Hongjie; Wang, Chung-Huei Katherine; Carter, Darrick; Lieber, André

    2016-04-01

    A central resistance mechanism in solid tumors is the maintenance of epithelial junctions between malignant cells that prevent drug penetration into the tumor. Human adenoviruses (Ads) have evolved mechanisms to breach epithelial barriers. For example, during Ad serotype 3 (Ad3) infection of epithelial tumor cells, massive amounts of subviral penton-dodecahedral particles (PtDd) are produced and released from infected cells to trigger the transient opening of epithelial junctions, thus facilitating lateral virus spread. We show here that an Ad3 mutant that is disabled for PtDd production is significantly less effective in killing of epithelial human xenograft tumors than the wild-type Ad3 virus. Intratumoral spread and therapeutic effect of the Ad3 mutant was enhanced by co-administration of a small recombinant protein (JO; produced in Escherichia coli) that incorporated the minimal junction opening domains of PtDd. We then demonstrated that co-administration of JO with replication-competent Ads that do not produce PtDd (Ad5, Ad35) resulted in greater attenuation of tumor growth than virus injection alone. Furthermore, we genetically modified a conditionally replicating Ad5-based oncolytic Ad (Ad5Δ24) to express a secreted form of JO upon replication in tumor cells. The JO-expressing virus had a significantly greater antitumor effect than the unmodified AdΔ24 version. Our findings indicate that epithelial junctions limit the efficacy of oncolytic Ads and that this problem can be address by co-injection or expression of JO. JO has also the potential for improving cancer therapy with other types of oncolytic viruses. PMID:26993072

  7. Phase diagram of the Gaussian-core model.

    PubMed

    Prestipino, Santi; Saija, Franz; Giaquinta, Paolo V

    2005-05-01

    We trace with high numerical accuracy the phase diagram of the Gaussian-core model, a classical system of point particles interacting via a Gaussian-shaped, purely repulsive potential. This model, which provides a reliable qualitative description of the thermal behavior of interpenetrable globular polymers, is known to exhibit a polymorphic fcc-bcc transition at low densities and reentrant melting at high densities. Extensive Monte Carlo simulations, carried out in conjunction with accurate calculations of the solid free energies, lead to a thermodynamic scenario that is partially modified with respect to previous knowledge. In particular, we find that: (i) the fluid-bcc-fcc triple-point temperature is about one third of the maximum freezing temperature; (ii) upon isothermal compression, the model exhibits a fluid-bcc-fcc-bcc-fluid sequence of phases in a narrow range of temperatures just above the triple point. We discuss these results in relation to the behavior of star-polymer solutions and of other softly repulsive systems. PMID:16089510

  8. PACS model based on digital watermarking and its core algorithms

    NASA Astrophysics Data System (ADS)

    Que, Dashun; Wen, Xianlin; Chen, Bi

    2009-10-01

    PACS model based on digital watermarking is proposed by analyzing medical image features and PACS requirements from the point of view of information security, its core being digital watermarking server and the corresponding processing module. Two kinds of digital watermarking algorithm are studied; one is non-region of interest (NROI) digital watermarking algorithm based on wavelet domain and block-mean, the other is reversible watermarking algorithm on extended difference and pseudo-random matrix. The former belongs to robust lossy watermarking, which embedded in NROI by wavelet provides a good way for protecting the focus area (ROI) of images, and introduction of block-mean approach a good scheme to enhance the anti-attack capability; the latter belongs to fragile lossless watermarking, which has the performance of simple implementation and can realize tamper localization effectively, and the pseudo-random matrix enhances the correlation and security between pixels. Plenty of experimental research has been completed in this paper, including the realization of digital watermarking PACS model, the watermarking processing module and its anti-attack experiments, the digital watermarking server and the network transmission simulating experiments of medical images. Theoretical analysis and experimental results show that the designed PACS model can effectively ensure confidentiality, authenticity, integrity and security of medical image information.

  9. Numerical modelling of Triple Junction Tectonics at Karlıova, Eastern Turkey: implications for the mechanism of magma transport

    NASA Astrophysics Data System (ADS)

    Karaoǧlu, Özgür; Browning, John; Bazargan, Mohsen; Gudmundsson, Agust

    2016-04-01

    Few places on Earth are as tectonically active as the Karlıova region of eastern Turkey. In this region, complex interactions between the Arabian, Eurasian and Anatolian plates occur at the Karlıova Triple Junction (KTJ). Suitably stressed crustal materials of the extruded block on the Karlıova-type triple junctions are potential regions for magma ascent. The relationship between tectonics and magma propagation in triple junction tectonic settings is, however, poorly understood. This study discusses the mechanism of magma propagation in the Karlıova Triple Junction (KTJ) tectonic regime. We aim to demonstrate how the geometry and mechanical properties of faults and rock units affect magma propagation under a variety of tectonic boundary loads. We discuss the geologic setting of the KTJ and the manifestations of shallow and deeper magma chambers within the crustal segment. Our numerical modelling study aims to quantify the crustal response of various tectonic regimes in Eastern Turkey. The region is characterised by lithological heterogeneity which is considered in our models. We present a series of two-dimensional and three-dimensional numerical models to help constrain evolving ideas regarding inversion and transtensional tectonics in an east-west direction along the KTJ. We also consider a north to south striking profile which is subjected to regional compression and local extensional tectonic phases which likely operated in the region ~3 My. A three-dimensional model is presented to investigate the effect of regional differential stresses. Our numerical models demonstrate that the regional tectonic stresses that are capable of encouraging magma-chamber failure and dyke propagation. Turnadaǧ volcanism at the western part of this triple junction has been fed by a shallow magma chamber located at 8-10 km depth during E-W extension. The Varto caldera is also fed by a shallow magma chamber at 8-10 km depth. Numerical results show that if the region were to be

  10. Numerical Results of Earth's Core Accumulation 3-D Modelling

    NASA Astrophysics Data System (ADS)

    Khachay, Yurie; Anfilogov, Vsevolod

    2013-04-01

    For a long time as a most convenient had been the model of mega impact in which the early forming of the Earth's core and mantle had been the consequence of formed protoplanet collision with the body of Mercurial mass. But all dynamical models of the Earth's accumulation and the estimations after the Pb-Pb system, lead to the conclusion that the duration of the planet accumulation was about 1 milliard years. But isotopic results after the W-Hf system testify about a very early (5-10) million years, dividing of the geochemical reservoirs of the core and mantle. In [1,3] it is shown, that the account of energy dissipating by the decay of short living radioactive elements and first of all Al,it is sufficient for heating even small bodies with dimensions about (50-100) km up to the iron melting temperature and can be realized a principal new differentiation mechanism. The inner parts of the melted preplanets can join and they are mainly of iron content, but the cold silicate fragments return to the supply zone. Only after the increasing of the gravitational radius, the growing area of the future core can save also the silicate envelope fragments. All existing dynamical accumulation models are constructed by using a spherical-symmetrical model. Hence for understanding the further planet evolution it is significant to trace the origin and evolution of heterogeneities, which occur on the planet accumulation stage. In that paper we are modeling distributions of temperature, pressure, velocity of matter flowing in a block of 3D- spherical body with a growing radius. The boundary problem is solved by the finite-difference method for the system of equations, which include equations which describe the process of accumulation, the Safronov equation, the equation of impulse balance, equation Navier-Stocks, equation for above litho static pressure and heat conductivity in velocity-pressure variables using the Businesque approach. The numerical algorithm of the problem solution in

  11. Morse potential-based model for contacting composite rough surfaces: Application to self-assembled monolayer junctions

    NASA Astrophysics Data System (ADS)

    Sierra-Suarez, Jonatan A.; Majumdar, Shubhaditya; McGaughey, Alan J. H.; Malen, Jonathan A.; Higgs, C. Fred

    2016-04-01

    This work formulates a rough surface contact model that accounts for adhesion through a Morse potential and plasticity through the Kogut-Etsion finite element-based approximation. Compared to the commonly used Lennard-Jones (LJ) potential, the Morse potential provides a more accurate and generalized description for modeling covalent materials and surface interactions. An extension of this contact model to describe composite layered surfaces is presented and implemented to study a self-assembled monolayer (SAM) grown on a gold substrate placed in contact with a second gold substrate. Based on a comparison with prior experimental measurements of the thermal conductance of this SAM junction [Majumdar et al., Nano Lett. 15, 2985-2991 (2015)], the more general Morse potential-based contact model provides a better prediction of the percentage contact area than an equivalent LJ potential-based model.

  12. Integration of geometric consistency contributory factors in three-leg junctions collision prediction models of Portuguese two-lane national highways.

    PubMed

    da Costa, Jocilene Otilia; Jacques, Maria Alice Prudêncio; Soares, Francisco Emanuel Cunha; Freitas, Elisabete Fraga

    2016-01-01

    This paper aims at developing a collision prediction model for three-leg junctions located in national roads (NR) in Northern Portugal. The focus is to identify factors that contribute for collision type crashes in those locations, mainly factors related to road geometric consistency, since literature is scarce on those, and to research the impact of three modeling methods: generalized estimating equations, random-effects negative binomial models and random-parameters negative binomial models, on the factors of those models. The database used included data published between 2008 and 2010 of 177 three-leg junctions. It was split in three groups of contributing factors which were tested sequentially for each of the adopted models: at first only traffic, then, traffic and the geometric characteristics of the junctions within their area of influence; and, lastly, factors which show the difference between the geometric characteristics of the segments boarding the junctions' area of influence and the segment included in that area were added. The choice of the best modeling technique was supported by the result of a cross validation made to ascertain the best model for the three sets of researched contributing factors. The models fitted with random-parameters negative binomial models had the best performance in the process. In the best models obtained for every modeling technique, the characteristics of the road environment, including proxy measures for the geometric consistency, along with traffic volume, contribute significantly to the number of collisions. Both the variables concerning junctions and the various national highway segments in their area of influence, as well as variations from those characteristics concerning roadway segments which border the already mentioned area of influence have proven their relevance and, therefore, there is a rightful need to incorporate the effect of geometric consistency in the three-leg junctions safety studies. PMID:26513337

  13. Josephson junction simulation of neurons

    NASA Astrophysics Data System (ADS)

    Crotty, Patrick; Schult, Dan; Segall, Ken

    2010-07-01

    With the goal of understanding the intricate behavior and dynamics of collections of neurons, we present superconducting circuits containing Josephson junctions that model biologically realistic neurons. These “Josephson junction neurons” reproduce many characteristic behaviors of biological neurons such as action potentials, refractory periods, and firing thresholds. They can be coupled together in ways that mimic electrical and chemical synapses. Using existing fabrication technologies, large interconnected networks of Josephson junction neurons would operate fully in parallel. They would be orders of magnitude faster than both traditional computer simulations and biological neural networks. Josephson junction neurons provide a new tool for exploring long-term large-scale dynamics for networks of neurons.

  14. A Single-Level Tunnel Model to Account for Electrical Transport through Single Molecule- and Self-Assembled Monolayer-based Junctions

    PubMed Central

    Garrigues, Alvar R.; Yuan, Li; Wang, Lejia; Mucciolo, Eduardo R.; Thompon, Damien; del Barco, Enrique; Nijhuis, Christian A.

    2016-01-01

    We present a theoretical analysis aimed at understanding electrical conduction in molecular tunnel junctions. We focus on discussing the validity of coherent versus incoherent theoretical formulations for single-level tunneling to explain experimental results obtained under a wide range of experimental conditions, including measurements in individual molecules connecting the leads of electromigrated single-electron transistors and junctions of self-assembled monolayers (SAM) of molecules sandwiched between two macroscopic contacts. We show that the restriction of transport through a single level in solid state junctions (no solvent) makes coherent and incoherent tunneling formalisms indistinguishable when only one level participates in transport. Similar to Marcus relaxation processes in wet electrochemistry, the thermal broadening of the Fermi distribution describing the electronic occupation energies in the electrodes accounts for the exponential dependence of the tunneling current on temperature. We demonstrate that a single-level tunnel model satisfactorily explains experimental results obtained in three different molecular junctions (both single-molecule and SAM-based) formed by ferrocene-based molecules. Among other things, we use the model to map the electrostatic potential profile in EGaIn-based SAM junctions in which the ferrocene unit is placed at different positions within the molecule, and we find that electrical screening gives rise to a strongly non-linear profile across the junction. PMID:27216489

  15. A Single-Level Tunnel Model to Account for Electrical Transport through Single Molecule- and Self-Assembled Monolayer-based Junctions.

    PubMed

    Garrigues, Alvar R; Yuan, Li; Wang, Lejia; Mucciolo, Eduardo R; Thompon, Damien; Del Barco, Enrique; Nijhuis, Christian A

    2016-01-01

    We present a theoretical analysis aimed at understanding electrical conduction in molecular tunnel junctions. We focus on discussing the validity of coherent versus incoherent theoretical formulations for single-level tunneling to explain experimental results obtained under a wide range of experimental conditions, including measurements in individual molecules connecting the leads of electromigrated single-electron transistors and junctions of self-assembled monolayers (SAM) of molecules sandwiched between two macroscopic contacts. We show that the restriction of transport through a single level in solid state junctions (no solvent) makes coherent and incoherent tunneling formalisms indistinguishable when only one level participates in transport. Similar to Marcus relaxation processes in wet electrochemistry, the thermal broadening of the Fermi distribution describing the electronic occupation energies in the electrodes accounts for the exponential dependence of the tunneling current on temperature. We demonstrate that a single-level tunnel model satisfactorily explains experimental results obtained in three different molecular junctions (both single-molecule and SAM-based) formed by ferrocene-based molecules. Among other things, we use the model to map the electrostatic potential profile in EGaIn-based SAM junctions in which the ferrocene unit is placed at different positions within the molecule, and we find that electrical screening gives rise to a strongly non-linear profile across the junction. PMID:27216489

  16. A Single-Level Tunnel Model to Account for Electrical Transport through Single Molecule- and Self-Assembled Monolayer-based Junctions

    NASA Astrophysics Data System (ADS)

    Garrigues, Alvar R.; Yuan, Li; Wang, Lejia; Mucciolo, Eduardo R.; Thompon, Damien; Del Barco, Enrique; Nijhuis, Christian A.

    2016-05-01

    We present a theoretical analysis aimed at understanding electrical conduction in molecular tunnel junctions. We focus on discussing the validity of coherent versus incoherent theoretical formulations for single-level tunneling to explain experimental results obtained under a wide range of experimental conditions, including measurements in individual molecules connecting the leads of electromigrated single-electron transistors and junctions of self-assembled monolayers (SAM) of molecules sandwiched between two macroscopic contacts. We show that the restriction of transport through a single level in solid state junctions (no solvent) makes coherent and incoherent tunneling formalisms indistinguishable when only one level participates in transport. Similar to Marcus relaxation processes in wet electrochemistry, the thermal broadening of the Fermi distribution describing the electronic occupation energies in the electrodes accounts for the exponential dependence of the tunneling current on temperature. We demonstrate that a single-level tunnel model satisfactorily explains experimental results obtained in three different molecular junctions (both single-molecule and SAM-based) formed by ferrocene-based molecules. Among other things, we use the model to map the electrostatic potential profile in EGaIn-based SAM junctions in which the ferrocene unit is placed at different positions within the molecule, and we find that electrical screening gives rise to a strongly non-linear profile across the junction.

  17. Analytical model and new structure of the enhancement-mode polarization-junction HEMT with vertical conduction channel

    NASA Astrophysics Data System (ADS)

    Yang, Chao; Xiong, Jiayun; Wei, Jie; Wu, Junfeng; Peng, Fu; Deng, Siyu; Zhang, Bo; Luo, Xiaorong

    2016-04-01

    A novel enhancement-mode (E-mode) polarization-junction HEMT with vertical conduction channel (PVC-HEMT) is proposed, and its analytical model for threshold voltage (Vth) is presented. It has two features: one is GaN/AlGaN/GaN double hetero-structure, the other is that source and drain locate at the same side of trench-type MOS gate (T-gate), and the source contacts with the T-gate, which forms vertical conduction channel (VC). The 2-D hole gas (2-DHG) and 2-D electron gas (2-DEG) are formed at the GaN-top/AlGaN and AlGaN/GaN-buffer interface, respectively, forming the polarization-junction. First, the E-mode operation is realized because 2-DHG under the source prevents the electrons injecting from source to 2-DEG, breaking through the conventional E-mode method by depleting 2-DEG under the gate. Second, a uniform electric field (E-field) distribution is achieved due to the assisted depletion effect by polarization-junction. Third, the source reduces the E-field peak at the T-gate side and modulates the E-field distribution. The breakdown voltage (BV) of PVC-HEMT is 705 V and specific ON-resistance (RON,sp) is 1.18 mΩ cm2. Compared with conventional HEMT (C-HEMT), PVC-HEMT has a smaller size due to the special location of the source and T-gate. An analytic threshold voltage model is presented and the analytical results agree well with the simulated results.

  18. Conductance Measurements of Magnesium Diboride-based Josephson Junctions Below 1 Kelvin: Beyond the 2-Gap Model

    NASA Astrophysics Data System (ADS)

    Carabello, Steven; Lambert, Joseph; Mlack, Jerome; Dai, Wenqing; Li, Qi; Chen, Ke; Cunnane, Daniel; Zhuang, C. G.; Xi, X. X.; Ramos, Roberto

    2014-03-01

    Theoretical and experimental studies have probed the nature of magnesium diboride's two superconducting energy gaps Δπ and Δσ. Several theoretical analyses have predicted fine structures within each energy gap, with recent experiments revealing similar structures. We have performed high-resolution tunneling measurements of low-transparency Josephson junctions using ``terraced,'' ``columnar,'' and c-axis MgB2 films separated by its native oxide from either lead (Pb) or tin (Sn) counter-electrodes. Using high-resolution I-V data at T as low as 23mK, we observe sub-structures within both energy gaps. We also observe sharp peaks in the subgap that identify, to high precision, the energy gap values of the junction counter-electrodes (Pb and Sn). These lead us to conclude that the substructures seen in the gaps are due to MgB2. We then fit the data using simplified two-gap and four-gap models with variable weights and broadening factors. By demonstrating the inadequacy of a simple two-gap model in fitting the data, we illustrate that some distinctions between theoretical models of energy gap substructures are experimentally observable. R.C.R. acknowledges partial support from National Science Foundation Grant # DMR-1206561.

  19. Technical bases of the second generation SARIS core model (Task Number: 90-008-0)

    SciTech Connect

    Gregory, M.V.

    1991-11-01

    A methodology has been developed to rigorously derive the constants in the Savannah River Simulator (SARIS) core model from detailed, charge-design, diffusion theory solutions. This methodology is intended to replace the ill-defined, ad hoc iterative process used in the past to generate these constants. Along the development path, three shortcomings of the current core model were identified and corrected. The updated core model with revised constants is termed the second generation core model. In addition, changes in the decay heat and delayed neutron precursor models are also recommended, all in the interest of improving simulator neutronics fidelity.

  20. Application of stochastic automata networks for creation of continuous time Markov chain models of voltage gating of gap junction channels.

    PubMed

    Snipas, Mindaugas; Pranevicius, Henrikas; Pranevicius, Mindaugas; Pranevicius, Osvaldas; Paulauskas, Nerijus; Bukauskas, Feliksas F

    2015-01-01

    The primary goal of this work was to study advantages of numerical methods used for the creation of continuous time Markov chain models (CTMC) of voltage gating of gap junction (GJ) channels composed of connexin protein. This task was accomplished by describing gating of GJs using the formalism of the stochastic automata networks (SANs), which allowed for very efficient building and storing of infinitesimal generator of the CTMC that allowed to produce matrices of the models containing a distinct block structure. All of that allowed us to develop efficient numerical methods for a steady-state solution of CTMC models. This allowed us to accelerate CPU time, which is necessary to solve CTMC models, ~20 times. PMID:25705700

  1. The composition of Earth's core from equations of state, metal-silicate partitioning, and core formation modeling

    NASA Astrophysics Data System (ADS)

    Fischer, Rebecca; Campbell, Andrew; Ciesla, Fred

    2016-04-01

    The Earth accreted in a series of increasingly large and violent collisions. Simultaneously, the metallic core segregated from the silicate mantle, acquiring its modern composition through high pressure (P), high temperature (T) partitioning reactions. Here we present a model that couples these aspects of early planetary evolution, building on recent accretion simulations and metal-silicate partitioning experiments, constrained by density measurements of Fe-rich alloys. Previously, the equations of state of FeO, Fe-9Si, Fe-16Si, and FeSi were measured to megabar pressures and several thousand K using a laser-heated diamond anvil cell. With these equations of state, we determined that the core's density can be reproduced through the addition of 11.3 +/- 0.6 wt% silicon or 8.1 +/- 1.1 wt% oxygen to an Fe-Ni alloy (Fischer et al., 2011, 2014). Metal-silicate partitioning experiments of Ni, Co, V, Cr, Si, and O have been performed in a diamond anvil cell to 100 GPa and 5700 K, allowing the effects of P, T, and composition on the partitioning behaviors of these elements to be parameterized (Fischer et al., 2015; Siebert et al., 2012). Here we apply those experimental results to model Earth's core formation, using N-body simulations to describe the delivery, masses, and original locations of planetary building blocks (Fischer and Ciesla, 2014). As planets accrete, their core and mantle compositions are modified by high P-T reactions with each collision (Rubie et al., 2011). For partial equilibration of the mantle at 55% of the evolving core-mantle boundary pressure and the liquidus temperature, we find that the core contains 5.4 wt% Si and 1.9 wt% O. This composition is consistent with the seismologically-inferred density of Earth's core, based on comparisons to our equations of state, and indicate that the core cannot contain more than ~2 wt% S or C. Earth analogues experience 1.2 +/- 0.2 log units of oxidation during accretion, due to both the effects of high P

  2. Preschool Literacy and the Common Core: A Professional Development Model

    ERIC Educational Resources Information Center

    Wake, Donna G.; Benson, Tammy Rachelle

    2016-01-01

    Many states have adopted the Common Core Standards for literacy and math and have begun enacting these standards in school curriculum. In states where these standards have been adopted, professional educators working in K-12 contexts have been working to create transition plans from existing state-based standards to the Common Core standards. A…

  3. THREE-DIMENSIONAL FIELD MODELS FOR REVERSE BIASED P-N JUNCTIONS.

    SciTech Connect

    UBALDI,F.; POZZI, G.; FAZZINI, P.F.; BELEGGIA, M.

    2007-04-02

    In order to obtain reliable quantitative information on the electrostatic field associated with reverse-biased p-n junctions and on the distribution of dopants, the physics of the so-called ''dead layer'' and the influence of charged oxide layers are of paramount importance. To this purpose, experimental observations near the edge of a TEM sample can be useful. In these conditions, however, phase computations required to interpret the experimental results are very challenging as the problem is intrinsically three-dimensional. In order to cope with this problem, a mixed analytical-numerical approach is presented and discussed.

  4. Stem Cell Modeling of Core Binding Factor Acute Myeloid Leukemia

    PubMed Central

    Mosna, Federico

    2016-01-01

    Even though clonally originated from a single cell, acute leukemia loses its homogeneity soon and presents at clinical diagnosis as a hierarchy of cells endowed with different functions, of which only a minority possesses the ability to recapitulate the disease. Due to their analogy to hematopoietic stem cells, these cells have been named “leukemia stem cells,” and are thought to be chiefly responsible for disease relapse and ultimate survival after chemotherapy. Core Binding Factor (CBF) Acute Myeloid Leukemia (AML) is cytogenetically characterized by either the t(8;21) or the inv(16)/t(16;16) chromosomal abnormalities, which, although being pathognomonic, are not sufficient per se to induce overt leukemia but rather determine a preclinical phase of disease when preleukemic subclones compete until the acquisition of clonal dominance by one of them. In this review we summarize the concepts regarding the application of the “leukemia stem cell” theory to the development of CBF AML; we will analyze the studies investigating the leukemogenetic role of t(8;21) and inv(16)/t(16;16), the proposed theories of its clonal evolution, and the role played by the hematopoietic niches in preserving the disease. Finally, we will discuss the clinical implications of stem cell modeling of CBF AML for the therapy of the disease. PMID:26880987

  5. Core cooling by subsolidus mantle convection. [thermal evolution model of earth

    NASA Technical Reports Server (NTRS)

    Schubert, G.; Cassen, P.; Young, R. E.

    1979-01-01

    Although vigorous mantle convection early in the thermal history of the earth is shown to be capable of removing several times the latent heat content of the core, a thermal evolution model of the earth in which the core does not solidify can be constructed. The large amount of energy removed from the model earth's core by mantle convection is supplied by the internal energy of the core which is assumed to cool from an initial high temperature given by the silicate melting temperature at the core-mantle boundary. For the smaller terrestrial planets, the iron and silicate melting temperatures at the core-mantle boundaries are more comparable than for the earth; the models incorporate temperature-dependent mantle viscosity and radiogenic heat sources in the mantle. The earth models are constrained by the present surface heat flux and mantle viscosity and internal heat sources produce only about 55% of the earth model's present surface heat flow.

  6. Magnetically nonlinear and anisotropic iron core model of synchronous reluctance motor

    NASA Astrophysics Data System (ADS)

    Štumberger, G.; Štumberger, B.; Dolinar, D.

    2003-01-01

    The magnetically nonlinear and anisotropic iron core model of a synchronous reluctance motor (SRM) is presented. The iron core model is given by the current-dependent flux linkages and their partial derivatives. It is included in a dynamic SRM model and confirmed through the comparison of measured and calculated results in the case of current-controlled linear synchronous reluctance servomotor.

  7. Evolution of resistive switching and its ionic models in Pt/Nb-doped SrTiO3 junctions

    NASA Astrophysics Data System (ADS)

    Yang, Mei; Ma, Xiaohua; Wang, Hong; Xi, He; Lv, Ling; Zhang, Peng; Xie, Yong; Gao, Haixia; Cao, Yanrong; Li, Shuwei; Hao, Yue

    2016-07-01

    Charge-trapping or ionic mechanisms of the resistive switching (RS) at metal/Nb-doped SrTiO3 (NSTO) interfaces are still unclear. Here, the electrical properties and RS evolution at Pt/NSTO interfaces are investigated. A volatile RS in the fresh junctions complies with Schottky theory involving an interfacial layer and electrically dependent permittivity. The RS is interpreted by a redox-reaction modulated barrier model. A nonvolatile RS emerges and evolves with increasing the forward voltage. I–V and C–V characteristics imply different conductive filament (CF) configurations in high and low resistance states. An in-barrier ionic CF model is established for the nonvolatile RS. The coherent ionic models are beneficial for understanding the interfacial role in RS and for regulating RS characteristics or realizing high quality metal/oxide diodes.

  8. Carbon nanotube intramolecular junctions

    NASA Astrophysics Data System (ADS)

    Yao, Zhen; Postma, Henk W. Ch.; Balents, Leon; Dekker, Cees

    1999-11-01

    The ultimate device miniaturization would be to use individual molecules as functional devices. Single-wall carbon nanotubes (SWNTs) are promising candidates for achieving this: depending on their diameter and chirality, they are either one-dimensional metals or semiconductors. Single-electron transistors employing metallic nanotubes and field-effect transistors employing semiconducting nanotubes have been demonstrated. Intramolecular devices have also been proposed which should display a range of other device functions. For example, by introducing a pentagon and a heptagon into the hexagonal carbon lattice, two tube segments with different atomic and electronic structures can be seamlessly fused together to create intramolecular metal-metal, metal-semiconductor, or semiconductor-semiconductor junctions. Here we report electrical transport measurements on SWNTs with intramolecular junctions. We find that a metal-semiconductor junction behaves like a rectifying diode with nonlinear transport characteristics that are strongly asymmetric with respect to bias polarity. In the case of a metal-metal junction, the conductance appears to be strongly suppressed and it displays a power-law dependence on temperatures and applied voltage, consistent with tunnelling between the ends of two Luttinger liquids. Our results emphasize the need to consider screening and electron interactions when designing and modelling molecular devices. Realization of carbon-based molecular electronics will require future efforts in the controlled production of these intramolecular nanotube junctions.

  9. Spinal astrocyte gap junction and glutamate transporter expression contributes to a rat model of bortezomib-induced peripheral neuropathy

    PubMed Central

    Robinson, Caleb R.; Dougherty, Patrick M.

    2014-01-01

    There is increasing evidence implicating astrocytes in multiple forms of chronic pain, as well as in the specific context of chemotherapy-induced peripheral neuropathy (CIPN). However, it is still unclear what the exact role of astrocytes may be in the context of CIPN. Findings in oxaliplatin and paclitaxel models have displayed altered expression of astrocytic gap junctions and glutamate transporters as means by which astrocytes may contribute to observed behavioral changes. The current study investigated whether these changes were also generalizable to the bortezomib CIPN. Changes in mechanical sensitivity were verified in bortezomib-treated animals, and these changes were prevented by co-treatment with a glial activation inhibitor (minocycline), a gap junction decoupler (carbenoxolone), and by a glutamate transporter upregulator (ceftriaxone). Immunohistochemistry data at day 30 in bortezomib-treated animals showed increases in expression of GFAP and connexin 43 but decrease in GLAST expression. These changes were prevented by co-treatment with minocycline. Follow-up Western blotting data showed a shift in connexin 43 from a non-phosphorylated state to a phosphorylated state, indicating increased trafficking of expressed connexin 43 to the cell membrane. These data suggest that increases in behavioral sensitivity to cutaneous stimuli may be tied to persistent synaptic glutamate resulting from increased calcium flow between spinal astrocytes. PMID:25446343

  10. Ab initio no-core shell model with continuum

    NASA Astrophysics Data System (ADS)

    Navratil, Petr

    2008-04-01

    The ab initio no-core shell model (NCSM) is a many-body approach to nuclear structure of light nuclei. The NCSM adopts an effective interaction theory to transform fundamental inter-nucleon interactions into effective interactions for a specified nucleus in a selected harmonic oscillator basis space [1]. The method is capable of predicting nuclear structure from inter-nucleon forces derived from quantum chromodynamics by means of chiral effective field theory [2]. NCSM extensions to the microscopic description of nuclear reactions are now under development. In my talk, I will first discuss our recent calculations of the ^4He total photo-absorption cross section using two- and three-nucleon interactions from chiral effective field theory [3]. I will then outline our effort to augment the NCSM by the resonating group method (RGM) technique to develop a new method capable of describing simultaneously both bound states and nuclear reactions on light nuclei [4]. This approach, which preserves translational symmetry and the Pauli principle, will allow us to calculate cross sections of reactions important for astrophysics and describe weakly-bound systems from first principles. I will present our first phase shift results for neutron scattering off ^3H, ^4He and ^7Li and proton scattering off ^3He, ^4He and ^7Be using realistic nucleon-nucleon potentials. 3mm [1] P. Navr'atil, J. P. Vary and B. R. Barrett, Phys. Rev. C 62, 054311 (2000). [2] P. Navr'atil and V. G. Gueorguiev and J. P. Vary, W. E. Ormand and A. Nogga, Phys. Rev. Lett. 99, 042501 (2007). [3] S. Quaglioni and P. Navr'atil, Phys. Lett. B 652, 370 (2007). [4] S. Quaglioni and P. Navr'atil, arXiv:0712.0855.

  11. Computer modeling of a two-junction, monolithic cascade solar cell

    NASA Technical Reports Server (NTRS)

    Lamorte, M. F.; Abbott, D.

    1979-01-01

    The theory and design criteria for monolithic, two-junction cascade solar cells are described. The departure from the conventional solar cell analytical method and the reasons for using the integral form of the continuity equations are briefly discussed. The results of design optimization are presented. The energy conversion efficiency that is predicted for the optimized structure is greater than 30% at 300 K, AMO and one sun. The analytical method predicts device performance characteristics as a function of temperature. The range is restricted to 300 to 600 K. While the analysis is capable of determining most of the physical processes occurring in each of the individual layers, only the more significant device performance characteristics are presented.

  12. Preliminary Results from Integrated Ocean Drilling Program Expedition 324: Coring Shatsky Rise to Test Models of Oceanic Plateau Formation

    NASA Astrophysics Data System (ADS)

    Sager, W. W.; Sano, T.; Geldmacher, J.

    2009-12-01

    Located ~1500 km east of Japan, Shatsky Rise is a large oceanic plateau with an area roughly equivalent to Japan or California. The plateau formed at a rapidly-spreading triple junction during the late Jurassic and Early Cretaceous. Some evidence, such as the inferred duration of initial eruptions, the “capture” of the triple junction, and the transition from massive initial eruptions to a smaller trail of volcanism have been taken to support the idea that Shatsky Rise was emplaced by the head of a starting mantle plume. In contrast, other evidence, such as MORB-like geochemistry of existing samples, favor a plate boundary formation. With characteristics that could fit either type of model, Shatsky Rise is an ideal place to learn what makes an oceanic plateau. A major roadblock to understanding Shatsky Rise has been the paucity of suitable samples. The few dredge samples available from the plateau are highly altered, giving little insight into primary geochemistry and no usable radiometric dates. Only one Ocean Drilling Program (ODP) hole has penetrated into the igneous complex (Site 1213), yielding intriguing data, but raising as many questions as answers. During September-November 2009, Integrated Ocean Drilling Program (IODP) Expedition 324 will core at 5 locations along Shatsky Rise with the primary goal of recovering igneous rocks for study. Three of the five are sites situated on the largest volcanic edifice, TAMU Massif, the massive volcano that represents initial eruptions. In addition, one site will be drilled on both ORI and Shirshov Massifs, which are smaller, younger volcanoes in central and northern Shatsky Rise. In all, expedition plans call for coring ~800 m of igneous basement rock for various studies, including geochronology to examine the timing of eruptions, isotope and geochemical studies to investigate source type and depth, physical volcanology to learn about plateau eruptions, and paleomagnetism to determine paleolatitude and subsequent

  13. Little Earth Experiment: An instrument to model planetary cores.

    PubMed

    Aujogue, Kélig; Pothérat, Alban; Bates, Ian; Debray, François; Sreenivasan, Binod

    2016-08-01

    In this paper, we present a new experimental facility, Little Earth Experiment, designed to study the hydrodynamics of liquid planetary cores. The main novelty of this apparatus is that a transparent electrically conducting electrolyte is subject to extremely high magnetic fields (up to 10 T) to produce electromagnetic effects comparable to those produced by moderate magnetic fields in planetary cores. This technique makes it possible to visualise for the first time the coupling between the principal forces in a convection-driven dynamo by means of Particle Image Velocimetry (PIV) in a geometry relevant to planets. We first present the technology that enables us to generate these forces and implement PIV in a high magnetic field environment. We then show that the magnetic field drastically changes the structure of convective plumes in a configuration relevant to the tangent cylinder region of the Earth's core. PMID:27587138

  14. Little Earth Experiment: An instrument to model planetary cores

    NASA Astrophysics Data System (ADS)

    Aujogue, Kélig; Pothérat, Alban; Bates, Ian; Debray, François; Sreenivasan, Binod

    2016-08-01

    In this paper, we present a new experimental facility, Little Earth Experiment, designed to study the hydrodynamics of liquid planetary cores. The main novelty of this apparatus is that a transparent electrically conducting electrolyte is subject to extremely high magnetic fields (up to 10 T) to produce electromagnetic effects comparable to those produced by moderate magnetic fields in planetary cores. This technique makes it possible to visualise for the first time the coupling between the principal forces in a convection-driven dynamo by means of Particle Image Velocimetry (PIV) in a geometry relevant to planets. We first present the technology that enables us to generate these forces and implement PIV in a high magnetic field environment. We then show that the magnetic field drastically changes the structure of convective plumes in a configuration relevant to the tangent cylinder region of the Earth's core.

  15. An analytical model for the evolution of starless cores - I. The constant-mass case

    NASA Astrophysics Data System (ADS)

    Pattle, K.

    2016-07-01

    We propose an analytical model for the quasi-static evolution of starless cores confined by a constant external pressure, assuming that cores are isothermal and obey a spherically symmetric density distribution. We model core evolution for Plummer-like and Gaussian density distributions in the adiabatic and isothermal limits, assuming Larson-like dissipation of turbulence. We model the variation in the terms in the virial equation as a function of core characteristic radius, and determine whether cores are evolving towards virial equilibrium or gravitational collapse. We ignore accretion on to cores in the current study. We discuss the different behaviours predicted by the isothermal and adiabatic cases, and by our choice of index for the size-linewidth relation, and suggest a means of parametrizing the magnetic energy term in the virial equation. We model the evolution of the set of cores observed by Pattle et al. in the L1688 region of Ophiuchus in the `virial plane'. We find that not all virially bound and pressure-confined cores will evolve to become gravitationally bound, with many instead contracting to virial equilibrium with their surroundings, and find an absence of gravitationally dominated and virially unbound cores. We hypothesize a `starless core desert' in this quadrant of the virial plane, which may result from cores initially forming as pressure-confined objects. We conclude that a virially bound and pressure-confined core will not necessarily evolve to become gravitationally bound, and thus cannot be considered pre-stellar. A core can only be definitively considered pre-stellar (collapsing to form an individual stellar system) if it is gravitationally unstable.

  16. Alterations in gap junction connexin43/connexin45 ratio mediate a transition from quiescence to excitation in a mathematical model of the myometrium

    PubMed Central

    Sheldon, Rachel E.; Mashayamombe, Chipo; Shi, Shao-Qing; Garfield, Robert E.; Shmygol, Anatoly; Blanks, Andrew M.; van den Berg, Hugo A.

    2014-01-01

    The smooth muscle cells of the uterus contract in unison during delivery. These cells achieve coordinated activity via electrical connections called gap junctions which consist of aggregated connexin proteins such as connexin43 and connexin45. The density of gap junctions governs the excitability of the myometrium (among other factors). An increase in gap junction density occurs immediately prior to parturition. We extend a mathematical model of the myometrium by incorporating the voltage-dependence of gap junctions that has been demonstrated in the experimental literature. Two functional subtypes exist, corresponding to systems with predominantly connexin43 and predominantly connexin45, respectively. Our simulation results indicate that the gap junction protein connexin45 acts as a negative modulator of uterine excitability, and hence, activity. A network with a higher proportion of connexin45 relative to connexin43 is unable to excite every cell. Connexin45 has much more rapid gating kinetics than connexin43 which we show limits the maximum duration of a local burst of activity. We propose that this effect regulates the degree of synchronous excitation attained during a contraction. Our results support the hypothesis that as labour approaches, connexin45 is downregulated to allow action potentials to spread more readily through the myometrium. PMID:25401181

  17. Continuously Optimized Reliable Energy (CORE) Microgrid: Models & Tools (Fact Sheet)

    SciTech Connect

    Not Available

    2013-07-01

    This brochure describes Continuously Optimized Reliable Energy (CORE), a trademarked process NREL employs to produce conceptual microgrid designs. This systems-based process enables designs to be optimized for economic value, energy surety, and sustainability. Capabilities NREL offers in support of microgrid design are explained.

  18. A Core Journal Decision Model Based on Weighted Page Rank

    ERIC Educational Resources Information Center

    Wang, Hei-Chia; Chou, Ya-lin; Guo, Jiunn-Liang

    2011-01-01

    Purpose: The paper's aim is to propose a core journal decision method, called the local impact factor (LIF), which can evaluate the requirements of the local user community by combining both the access rate and the weighted impact factor, and by tracking citation information on the local users' articles. Design/methodology/approach: Many…

  19. Competing Models of Librarianship: Do Core Values Make a Difference?

    ERIC Educational Resources Information Center

    Weissinger, Thomas

    2003-01-01

    Librarianship's worldview or philosophy preconditions understanding of ideas such as core value, diversity, and equity. Adherents to the orthodox version of this worldview restrict minority interests while aspiring to become a scientific profession. Those in favor of a modified version of the worldview support cultural diversity and non-positivist…

  20. The Unified Core: A "Major" Learning Community Model in Action

    ERIC Educational Resources Information Center

    Powell, Gwynn M.; Johnson, Corey W.; James, J. Joy; Dunlap, Rudy

    2011-01-01

    The Unified Core is an innovative approach to higher education that blends content through linked courses within a major to create a community of learners. This article offers the theoretical background for the approach, describes the implementation, and offers suggestions to educators who would like to design their own version of this innovative…

  1. Simulating and modeling the breakdown voltage in a semi-insulating GaAs P+N junction diode

    NASA Astrophysics Data System (ADS)

    Resfa, A.; Menezla, Brahimi. R.; Benchhima, M.

    2014-08-01

    This work aims to determine the characteristic I (breakdown voltage) of the inverse current in a GaAs PN junction diode, subject to a reverse polarization, while specifying the parameters that influence the breakdown voltage of the diode. In this work, we simulated the behavior of the ionization phenomenon by impact breakdown by avalanche of the PN junctions, subject to an inverse polarization. We will take into account both the trapping model in a stationary regime in the P+N structure using like material of basis the III-V compounds and mainly the GaAs semi-insulating in which the deep centers have in important densities. We are talking about the model of trapping in the space charge region (SCR) and that is the trap density donor and acceptor states. The carrier crossing the space charge region (SCR) of W thickness creates N electron—hole pairs: for every created pair, the electron and the hole are swept quickly by the electric field, each in an opposite direction, which comes back, according to an already accepted reasoning, to the crossing of the space charge region (SCR) by an electron or a hole. So the even N pair created by the initial particle provoke N2 ionizations and so forth. The study of the physical and electrical behaviour of semiconductors is based on the influence of the presence of deep centers on the characteristic I(V) current-tension, which requires the calculation of the electrostatic potential, the electric field, the integral of ionization, the density of the states traps, the diffusion current of minority in the regions (1) and (3), the current thermal generation in the region (2), the leakage current in the surface, and the breakdown voltage.

  2. Multiscale model of global inner-core anisotropy induced by hcp alloy plasticity

    NASA Astrophysics Data System (ADS)

    Lincot, A.; Cardin, Ph.; Deguen, R.; Merkel, S.

    2016-02-01

    The Earth's solid inner core exhibits a global seismic anisotropy of several percents. It results from a coherent alignment of anisotropic Fe alloy crystals through the inner-core history that can be sampled by present-day seismic observations. By combining self-consistent polycrystal plasticity, inner-core formation models, Monte-Carlo search for elastic moduli, and simulations of seismic measurements, we introduce a multiscale model that can reproduce a global seismic anisotropy of several percents aligned with the Earth's rotation axis. Conditions for a successful model are an hexagonal close packed structure for the inner-core Fe alloy, plastic deformation by pyramidal slip, and large-scale flow induced by a low-degree inner-core formation model. For global anisotropies ranging between 1 and 3%, the elastic anisotropy in the single crystal ranges from 5 to 20% with larger velocities along the c axis.

  3. High Flux Isotope Reactor Core Analysis-Challenges and Recent Enhancements in Modeling and Simulation

    SciTech Connect

    Ilas, Germina

    2016-01-01

    A concerted effort over the past few years has focused on enhancing the core depletion models for the High Flux Isotope Reactor (HFIR) as part of a comprehensive study for designing a HFIR core that would use low-enriched uranium (LEU) fuel. A HFIR core depletion model that is based on current state-of-the-art methods and nuclear data was needed for use as a reference for the design of an LEU fuel for HFIR and to improve the basis for analyses that support HFIR s current operation with high-enriched uranium (HEU) fuel. This paper summarizes the recent improvements in modeling and simulation for HFIR core analyses, with a focus on core depletion models.

  4. Inherited junctional epidermolysis bullosa in the German Pointer: establishment of a large animal model.

    PubMed

    Capt, Annabelle; Spirito, Flavia; Guaguere, Eric; Spadafora, Anne; Ortonne, Jean-Paul; Meneguzzi, Guerrino

    2005-03-01

    Junctional epidermolysis bullosa (JEB) is a genodermatosis suitable for gene therapy because conventional treatments are ineffective. Here, we elucidate the genetic basis of mild JEB in a breed of dogs that display all the clinical traits observed in JEB patients. The condition is associated with reduced expression of laminin 5 caused by a homozygous insertion (4818+207ins6.5 kb) of repetitive satellite DNA within intron 35 of the gene (lama3) for the laminin alpha3 chain. The intronic mutation interferes with maturation of the alpha3 pre-messenger RNA resulting in the coexpression of a transcript with a 227 nucleotide insertion and a wild-type mRNA that encodes scant amounts of the alpha3 polypeptide. Our results show that the amino acid sequence and structure of the canine and human alpha3 chain are highly conserved and that the reduced expression of laminin 5 affects the adhesion and clonogenic potential of the JEB keratinocytes. These JEB dogs provide the opportunity to perform gene delivery in a naturally occurring genodermatosis and to evaluate host tolerance to recombinant laminin 5. PMID:15737193

  5. Continuity of Monolayer-Bilayer Junctions for Localization of Lipid Raft Microdomains in Model Membranes.

    PubMed

    Ryu, Yong-Sang; Wittenberg, Nathan J; Suh, Jeng-Hun; Lee, Sang-Wook; Sohn, Youngjoo; Oh, Sang-Hyun; Parikh, Atul N; Lee, Sin-Doo

    2016-01-01

    We show that the selective localization of cholesterol-rich domains and associated ganglioside receptors prefer to occur in the monolayer across continuous monolayer-bilayer junctions (MBJs) in supported lipid membranes. For the MBJs, glass substrates were patterned with poly(dimethylsiloxane) (PDMS) oligomers by thermally-assisted contact printing, leaving behind 3 nm-thick PDMS patterns. The hydrophobicity of the transferred PDMS patterns was precisely tuned by the stamping temperature. Lipid monolayers were formed on the PDMS patterned surface while lipid bilayers were on the bare glass surface. Due to the continuity of the lipid membranes over the MBJs, essentially free diffusion of lipids was allowed between the monolayer on the PDMS surface and the upper leaflet of the bilayer on the glass substrate. The preferential localization of sphingomyelin, ganglioside GM1 and cholesterol in the monolayer region enabled to develop raft microdomains through coarsening of nanorafts. Our methodology provides a simple and effective scheme of non-disruptive manipulation of the chemical landscape associated with lipid phase separations, which leads to more sophisticated applications in biosensors and as cell culture substrates. PMID:27230411

  6. Continuity of monolayer-bilayer junctions for localization of lipid raft microdomains in model membranes

    DOE PAGESBeta

    Ryu, Yong -Sang; Wittenberg, Nathan J.; Suh, Jeng -Hun; Lee, Sang -Wook; Sohn, Youngjoo; Oh, Sang -Hyun; Parikh, Atul N.; Lee, Sin -Doo

    2016-05-27

    We show that the selective localization of cholesterol-rich domains and associated ganglioside receptors prefer to occur in the monolayer across continuous monolayer-bilayer junctions (MBJs) in supported lipid membranes. For the MBJs, glass substrates were patterned with poly(dimethylsiloxane) (PDMS) oligomers by thermally-assisted contact printing, leaving behind 3 nm-thick PDMS patterns. The hydrophobicity of the transferred PDMS patterns was precisely tuned by the stamping temperature. Lipid monolayers were formed on the PDMS patterned surface while lipid bilayers were on the bare glass surface. Due to the continuity of the lipid membranes over the MBJs, essentially free diffusion of lipids was allowed betweenmore » the monolayer on the PDMS surface and the upper leaflet of the bilayer on the glass substrate. The preferential localization of sphingomyelin, ganglioside GM1 and cholesterol in the monolayer region enabled to develop raft microdomains through coarsening of nanorafts. Furthermore, our methodology provides a simple and effective scheme of non-disruptive manipulation of the chemical landscape associated with lipid phase separations, which leads to more sophisticated applications in biosensors and as cell culture substrates.« less

  7. Continuity of Monolayer-Bilayer Junctions for Localization of Lipid Raft Microdomains in Model Membranes

    PubMed Central

    Ryu, Yong-Sang; Wittenberg, Nathan J.; Suh, Jeng-Hun; Lee, Sang-Wook; Sohn, Youngjoo; Oh, Sang-Hyun; Parikh, Atul N.; Lee, Sin-Doo

    2016-01-01

    We show that the selective localization of cholesterol-rich domains and associated ganglioside receptors prefer to occur in the monolayer across continuous monolayer-bilayer junctions (MBJs) in supported lipid membranes. For the MBJs, glass substrates were patterned with poly(dimethylsiloxane) (PDMS) oligomers by thermally-assisted contact printing, leaving behind 3 nm-thick PDMS patterns. The hydrophobicity of the transferred PDMS patterns was precisely tuned by the stamping temperature. Lipid monolayers were formed on the PDMS patterned surface while lipid bilayers were on the bare glass surface. Due to the continuity of the lipid membranes over the MBJs, essentially free diffusion of lipids was allowed between the monolayer on the PDMS surface and the upper leaflet of the bilayer on the glass substrate. The preferential localization of sphingomyelin, ganglioside GM1 and cholesterol in the monolayer region enabled to develop raft microdomains through coarsening of nanorafts. Our methodology provides a simple and effective scheme of non-disruptive manipulation of the chemical landscape associated with lipid phase separations, which leads to more sophisticated applications in biosensors and as cell culture substrates. PMID:27230411

  8. A novel nanopin model based on a Y-junction carbon nanotube

    NASA Astrophysics Data System (ADS)

    Zhang, Zhong-Qiang; Zhong, Jun; Ye, Hong-Fei; Liu, Zhen; Cheng, Guang-Gui; Ding, Jian-Ning

    2016-08-01

    A prototype of nanopin based on a Y-junction carbon nanotube (CNT) is first proposed. The loading and unloading processes are investigated by using classical molecular dynamics, considering the influences of the fit dimension, positioning error, thermal effect, and the loading/unloading velocity on the performance of the proposed nanopin. The optimum size of the gap between the nanopin and the through hole in a silicon component is obtained, which is responsible for a desired fixity with the acceptable install resistance. It is found that a proper positioning error in a certain direction associated with the branched structure of the nanopin will facilitate the installation process. The performance of the proposed nanopin is not sensitive to thermal and normal axial velocity of the nanopin, while the unloading direction affects appreciably on the service performance of the nanopin attributed to the orientation of the branched CNT. Particularly, the service performance of the proposed nanopin considerably depends on several special deforming configurations in the loading and unloading processes.

  9. Gap junction dysfunction in the prefrontal cortex induces depressive-like behaviors in rats.

    PubMed

    Sun, Jian-Dong; Liu, Yan; Yuan, Yu-He; Li, Jing; Chen, Nai-Hong

    2012-04-01

    Growing evidence has implicated glial anomalies in the pathophysiology of major depression disorder (MDD). Gap junctional communication is a main determinant of astrocytic function. However, it is unclear whether gap junction dysfunction is involved in MDD development. This study investigates changes in the function of astrocyte gap junction occurring in the rat prefrontal cortex (PFC) after chronic unpredictable stress (CUS), a rodent model of depression. Animals exposed to CUS and showing behavioral deficits in sucrose preference test (SPT) and novelty suppressed feeding test (NSFT) exhibited significant decreases in diffusion of gap junction channel-permeable dye and expression of connexin 43 (Cx43), a major component of astrocyte gap junction, and abnormal gap junctional ultrastructure in the PFC. Furthermore, we analyzed the effects of typical antidepressants fluoxetine and duloxetine and glucocorticoid receptor (GR) antagonist mifepristone on CUS-induced gap junctional dysfunction and depressive-like behaviors. The cellular and behavioral alterations induced by CUS were reversed and/or blocked by treatment with typical antidepressants or mifepristone, indicating that the mechanism of their antidepressant action may involve the amelioration of gap junction dysfunction and the cellular changes may be related to GR activation. We then investigated the effects of pharmacological gap junction blockade in the PFC on depressive-like behaviors. The results demonstrate that carbenoxolone (CBX) infusions induced anhedonia in SPT, and anxiety in NSFT, and Cx43 mimetic peptides Gap27 and Gap26 also induced anhedonia, a core symptom of depression. Together, this study supports the hypothesis that gap junction dysfunction contributes to the pathophysiology of depression. PMID:22189291

  10. Effects of low-intensity pulsed ultrasound on new trabecular bone during bone-tendon junction healing in a rabbit model: a synchrotron radiation micro-CT study.

    PubMed

    Lu, Hongbin; Zheng, Cheng; Wang, Zhanwen; Chen, Can; Chen, Huabin; Hu, Jianzhong

    2015-01-01

    This study was designed to evaluate the effects of low-intensity pulsed ultrasound on bone regeneration during the bone-tendon junction healing process and to explore the application of synchrotron radiation micro computed tomography in three dimensional visualization of the bone-tendon junction to evaluate the microarchitecture of new trabecular bone. Twenty four mature New Zealand rabbits underwent partial patellectomy to establish a bone-tendon junction injury model at the patella-patellar tendon complex. Animals were then divided into low-intensity pulsed ultrasound treatment (20 min/day, 7 times/week) and placebo control groups, and were euthanized at week 8 and 16 postoperatively (n = 6 for each group and time point). The patella-patellar tendon specimens were harvested for radiographic, histological and synchrotron radiation micro computed tomography detection. The area of the newly formed bone in the ultrasound group was significantly greater than that of control group at postoperative week 8 and 16. The high resolution three dimensional visualization images of the bone-tendon junction were acquired by synchrotron radiation micro computed tomography. Low-intensity pulsed ultrasound treatment promoted dense and irregular woven bone formation at week 8 with greater bone volume fraction, number and thickness of new trabecular bone but with lower separation. At week 16, ultrasound group specimens contained mature lamellar bone with higher bone volume fraction and thicker trabeculae than that of control group; however, there was no significant difference in separation and number of the new trabecular bone. This study confirms that low-intensity pulsed ultrasound treatment is able to promote bone formation and remodeling of new trabecular bone during the bone-tendon junction healing process in a rabbit model, and the synchrotron radiation micro computed tomography could be applied for three dimensional visualization to quantitatively evaluate the

  11. Effects of Low-Intensity Pulsed Ultrasound on New Trabecular Bone during Bone–Tendon Junction Healing in a Rabbit Model: A Synchrotron Radiation Micro-CT Study

    PubMed Central

    Lu, Hongbin; Zheng, Cheng; Wang, Zhanwen; Chen, Can; Chen, Huabin; Hu, Jianzhong

    2015-01-01

    This study was designed to evaluate the effects of low-intensity pulsed ultrasound on bone regeneration during the bone–tendon junction healing process and to explore the application of synchrotron radiation micro computed tomography in three dimensional visualization of the bone–tendon junction to evaluate the microarchitecture of new trabecular bone. Twenty four mature New Zealand rabbits underwent partial patellectomy to establish a bone–tendon junction injury model at the patella–patellar tendon complex. Animals were then divided into low-intensity pulsed ultrasound treatment (20 min/day, 7 times/week) and placebo control groups, and were euthanized at week 8 and 16 postoperatively (n = 6 for each group and time point). The patella–patellar tendon specimens were harvested for radiographic, histological and synchrotron radiation micro computed tomography detection. The area of the newly formed bone in the ultrasound group was significantly greater than that of control group at postoperative week 8 and 16. The high resolution three dimensional visualization images of the bone–tendon junction were acquired by synchrotron radiation micro computed tomography. Low-intensity pulsed ultrasound treatment promoted dense and irregular woven bone formation at week 8 with greater bone volume fraction, number and thickness of new trabecular bone but with lower separation. At week 16, ultrasound group specimens contained mature lamellar bone with higher bone volume fraction and thicker trabeculae than that of control group; however, there was no significant difference in separation and number of the new trabecular bone. This study confirms that low-intensity pulsed ultrasound treatment is able to promot bone formation and remodeling of new trabecular bone during the bone–tendon junction healing process in a rabbit model, and the synchrotron radiation micro computed tomography could be applied for three dimensional visualization to quantitatively evaluate the

  12. Stability of core-shell nanowires in selected model solutions

    NASA Astrophysics Data System (ADS)

    Kalska-Szostko, B.; Wykowska, U.; Basa, A.; Zambrzycka, E.

    2015-03-01

    This paper presents the studies of stability of magnetic core-shell nanowires prepared by electrochemical deposition from an acidic solution containing iron in the core and modified surface layer. The obtained nanowires were tested according to their durability in distilled water, 0.01 M citric acid, 0.9% NaCl, and commercial white wine (12% alcohol). The proposed solutions were chosen in such a way as to mimic food related environment due to a possible application of nanowires as additives to, for example, packages. After 1, 2 and 3 weeks wetting in the solutions, nanoparticles were tested by Infrared Spectroscopy, Atomic Absorption Spectroscopy, Transmission Electron Microscopy and X-ray diffraction methods.

  13. A Core-Particle Model for Periodically Focused Ion Beams with Intense Space-Charge

    SciTech Connect

    Lund, S M; Barnard, J J; Bukh, B; Chawla, S R; Chilton, S H

    2006-08-02

    A core-particle model is derived to analyze transverse orbits of test particles evolving in the presence of a core ion beam described by the KV distribution. The core beam has uniform density within an elliptical cross-section and can be applied to model both quadrupole and solenoidal focused beams in periodic or aperiodic lattices. Efficient analytical descriptions of electrostatic space-charge fields external to the beam core are derived to simplify model equations. Image charge effects are analyzed for an elliptical beam centered in a round, conducting pipe to estimate model corrections resulting from image charge nonlinearities. Transformations are employed to remove coherent utter motion associated with oscillations of the ion beam core due to rapidly varying, linear applied focusing forces. Diagnostics for particle trajectories, Poincare phase-space projections, and single-particle emittances based on these transformations better illustrate the effects of nonlinear forces acting on particles evolving outside the core. A numerical code has been written based on this model. Example applications illustrate model characteristics. The core-particle model described has recently been applied to identify physical processes leading to space-charge transport limits for an rms matched beam in a periodic quadrupole focusing channel [Lund and Chawla, Nuc. Instr. and Meth. A 561, 203 (2006)]. Further characteristics of these processes are presented here.

  14. Motor neuron apoptosis and neuromuscular junction perturbation are prominent features in a Drosophila model of Fus-mediated ALS

    PubMed Central

    2012-01-01

    Backgound Amyotrophic lateral sclerosis (ALS) is progressive neurodegenerative disease characterized by the loss of motor function. Several ALS genes have been identified as their mutations can lead to familial ALS, including the recently reported RNA-binding protein fused in sarcoma (Fus). However, it is not clear how mutations of Fus lead to motor neuron degeneration in ALS. In this study, we present a Drosophila model to examine the toxicity of Fus, its Drosophila orthologue Cabeza (Caz), and the ALS-related Fus mutants. Results Our results show that the expression of wild-type Fus/Caz or FusR521G induced progressive toxicity in multiple tissues of the transgenic flies in a dose- and age-dependent manner. The expression of Fus, Caz, or FusR521G in motor neurons significantly impaired the locomotive ability of fly larvae and adults. The presynaptic structures in neuromuscular junctions were disrupted and motor neurons in the ventral nerve cord (VNC) were disorganized and underwent apoptosis. Surprisingly, the interruption of Fus nuclear localization by either deleting its nuclear localization sequence (NLS) or adding a nuclear export signal (NES) blocked Fus toxicity. Moreover, we discovered that the loss of caz in Drosophila led to severe growth defects in the eyes and VNCs, caused locomotive disability and NMJ disruption, but did not induce apoptotic cell death. Conclusions These data demonstrate that the overexpression of Fus/Caz causes in vivo toxicity by disrupting neuromuscular junctions (NMJs) and inducing apoptosis in motor neurons. In addition, the nuclear localization of Fus is essential for Fus to induce toxicity. Our findings also suggest that Fus overexpression and gene deletion can cause similar degenerative phenotypes but the underlying mechanisms are likely different. PMID:22443542

  15. Mesoscale modeling of functional properties in core-shell nanoparticles

    NASA Astrophysics Data System (ADS)

    Mangeri, John; Heinonen, Olle; Karpeev, Dmitry; Nakhmanson, Serge

    2015-03-01

    Core-shell nanoparticle systems of Zn-ZnO and ZnO-TiO2 are studied computationally using the highly scalable MOOSE finite-element framework, developed at Idaho National Lab. The elastic anisotropic mismatch of the core and shell create an imprinting effect within the shell that produces a wide variation of strains. Due to this diversity of strains, the sharp band gap edges of the bulk semiconductor are observed to be ``thinned-out'' much like amorphous silicon. We show that a variety of factors, such as particle size, core-to-shell volume ratio, applied hydrostatic pressure, shell microstructure, as well as the effect of surface elasticity, can influence the distribution of optical band-gap values within the particle, which may prove useful within the field of photovoltaics. Part of the work by O.H. was supported by Award 70NANB14H012 from U.S. Department of Commerce, National Institute of Standards and Technology as part of the Center for Hierarchical Material Design.

  16. Dynamics of plume-triple junction interaction: Results from a series of three-dimensional numerical models and implications for the formation of oceanic plateaus

    NASA Astrophysics Data System (ADS)

    Dordevic, Mladen; Georgen, Jennifer

    2016-03-01

    Mantle plumes rising in the vicinity of mid-ocean ridges often generate anomalies in melt production and seafloor depth. This study investigates the dynamical interactions between a mantle plume and a ridge-ridge-ridge triple junction, using a parameter space approach and a suite of steady state, three-dimensional finite element numerical models. The top domain boundary is composed of three diverging plates, with each assigned half-spreading rates with respect to a fixed triple junction point. The bottom boundary is kept at a constant temperature of 1350°C except where a two-dimensional, Gaussian-shaped thermal anomaly simulating a plume is imposed. Models vary plume diameter, plume location, the viscosity contrast between plume and ambient mantle material, and the use of dehydration rheology in calculating viscosity. Importantly, the model results quantify how plume-related anomalies in mantle temperature pattern, seafloor depth, and crustal thickness depend on the specific set of parameters. To provide an example, one way of assessing the effect of conduit position is to calculate normalized area, defined to be the spatial dispersion of a given plume at specific depth (here selected to be 50 km) divided by the area occupied by the same plume when it is located under the triple junction. For one particular case modeled where the plume is centered in an intraplate position 100 km from the triple junction, normalized area is just 55%. Overall, these models provide a framework for better understanding plateau formation at triple junctions in the natural setting and a tool for constraining subsurface geodynamical processes and plume properties.

  17. Increased neurotransmitter release at the neuromuscular junction in a mouse model of polyglutamine disease.

    PubMed

    Rozas, José L; Gómez-Sánchez, Leonardo; Tomás-Zapico, Cristina; Lucas, José J; Fernández-Chacón, Rafael

    2011-01-19

    In Huntington's disease (HD), the expansion of polyglutamine (polyQ) repeats at the N terminus of the ubiquitous protein huntingtin (htt) leads to neurodegeneration in specific brain areas. Neurons degenerating in HD develop synaptic dysfunctions. However, it is unknown whether mutant htt impacts synaptic function in general. To investigate that, we have focused on the nerve terminals of motor neurons that typically do not degenerate in HD. Here, we have studied synaptic transmission at the neuromuscular junction of transgenic mice expressing a mutant form of htt (R6/1 mice). We have found that the size and frequency of miniature endplate potentials are similar in R6/1 and control mice. In contrast, the amplitude of evoked endplate potentials in R6/1 mice is increased compared to controls. Consistent with a presynaptic increase of release probability, synaptic depression under high-frequency stimulation is higher in R6/1 mice. In addition, no changes were detected in the size and dynamics of the recycling synaptic vesicle pool. Moreover, we have found increased amounts of the synaptic vesicle proteins synaptobrevin 1,2/VAMP 1,2 and cysteine string protein-α, and the SNARE protein SNAP-25, concomitant with normal levels of other synaptic vesicle markers. Our results reveal that the transgenic expression of a mutant form of htt leads to an unexpected gain of synaptic function. That phenotype is likely not secondary to neurodegeneration and might be due to a primary deregulation in synaptic protein levels. Our findings could be relevant to understand synaptic toxic effects of proteins with abnormal polyQ repeats. PMID:21248135

  18. Modeling Convective Core Overshoot and Diffusion in Procyon Constrained by Asteroseismic Data

    NASA Astrophysics Data System (ADS)

    Guenther, D. B.; Demarque, P.; Gruberbauer, M.

    2014-06-01

    We compare evolved stellar models, which match Procyon's mass and position in the HR diagram, to current ground-based asteroseismic observations. Diffusion of helium and metals along with two conventional core overshoot descriptions and the Kuhfuss nonlocal theory of convection are considered. We establish that one of the two published asteroseismic data reductions for Procyon, which mainly differ in their identification of even versus odd l values, is a significantly more probable and self-consistent match to our models than the other. The most probable models according to our Bayesian analysis have evolved to just short of turnoff, still retaining a hydrogen convective core. Our most probable models include Y and Z diffusion and have conventional core overshoot between 0.9 and 1.5 pressure scale heights, which increases the outer radius of the convective core by between 36% and 43%, respectively. We discuss the significance of this comparatively higher than expected core overshoot amount in terms of internal mixing during evolution. The parameters of our most probable models are similar regardless of whether adiabatic or nonadiabatic model p-mode frequencies are compared to the observations, although, the Bayesian probabilities are greater when the nonadiabatic model frequencies are used. All the most probable models (with or without core overshoot, adiabatic or nonadiabatic model frequencies, diffusion or no diffusion, including priors for the observed HRD location and mass or not) have masses that are within 1σ of the observed mass 1.497 ± 0.037 M ⊙.

  19. Synthetic Seismograms for Realistic 3D Earth Model with Anisotropic Inner Core

    NASA Astrophysics Data System (ADS)

    Tsuboi, S.; Tono, Y.

    2006-12-01

    We have demonstrated that we can calculate global theoretical seismograms for realistic 3D Earth models based upon the combination of a precise numerical technique (the spectral-element method) and a sufficiently fast supercomputer (the Earth Simulator) [Tsuboi et al, 2003]. Here we have calculated synthetic seismograms by using model S20RTS of the mantle (Ritsema et al., 1999), model CRUST2.0 of the crust (Basin et al., 2000), topography and bathymetry model ETOPO5, and anisotropic inner core model (Ishii 2002). The calculations are performed on 4056 processors, which require 507 out of 640 nodes of the Earth Simulator. These synthetics are computed by using SPECFEM3D(Komatitsch and Tromp, 2002) and are accurate up to 3.5 seconds. We have calculated these synthetics with aisotropic inner core model for several earthquakes and compared with the synthetics which are calculated for isotropic inner core model. Preliminary comparison shows that the travel time differences between anisotropic inner core model and isotropic core model for PKPab phases are at most a few seconds. There seems to be no significant differences in waveforms of PKP phases. These differences in travel times may help us to improve inner core fine structure by comparing these synthetics with observation.

  20. Modeling convective core overshoot and diffusion in Procyon constrained by asteroseismic data

    SciTech Connect

    Guenther, D. B.; Gruberbauer, M.; Demarque, P.

    2014-06-01

    We compare evolved stellar models, which match Procyon's mass and position in the HR diagram, to current ground-based asteroseismic observations. Diffusion of helium and metals along with two conventional core overshoot descriptions and the Kuhfuss nonlocal theory of convection are considered. We establish that one of the two published asteroseismic data reductions for Procyon, which mainly differ in their identification of even versus odd l values, is a significantly more probable and self-consistent match to our models than the other. The most probable models according to our Bayesian analysis have evolved to just short of turnoff, still retaining a hydrogen convective core. Our most probable models include Y and Z diffusion and have conventional core overshoot between 0.9 and 1.5 pressure scale heights, which increases the outer radius of the convective core by between 36% and 43%, respectively. We discuss the significance of this comparatively higher than expected core overshoot amount in terms of internal mixing during evolution. The parameters of our most probable models are similar regardless of whether adiabatic or nonadiabatic model p-mode frequencies are compared to the observations, although, the Bayesian probabilities are greater when the nonadiabatic model frequencies are used. All the most probable models (with or without core overshoot, adiabatic or nonadiabatic model frequencies, diffusion or no diffusion, including priors for the observed HRD location and mass or not) have masses that are within 1σ of the observed mass 1.497 ± 0.037 M {sub ☉}.

  1. Modeling of the interleaved hysteresis loop in the measurements of rotational core losses

    NASA Astrophysics Data System (ADS)

    Alatawneh, Natheer; Pillay, Pragasen

    2016-01-01

    The measurement of core losses in machine laminations reveals a fundamental difference between rotational and pulsating types. Rotational core losses under rotating fields decrease at high flux density, while pulsating losses keep increasing steadily. Experimental analyses of loss components Px and Py in x and y directions with rotating fields show that the loss decreases in one loss component and sometimes attains negative values. Tracking the evolution of hysteresis loops along this loss component discloses a peculiar behavior of magnetic hysteresis, where the loop changes its path from counterclockwise to clockwise within a cycle of magnetization process, the so called interleaved hysteresis loop. This paper highlights a successful procedure for modeling the interleaved hysteresis loop in the measurement of rotational core losses in electrical machine laminations using the generalized Prandtl-Ishlinskii (PI) model. The efficiency of the proposed model is compared to Preisach model. Results and conclusion of this work are of importance toward building an accurate model of rotational core losses.

  2. Fractional order junctions

    NASA Astrophysics Data System (ADS)

    Machado, J. Tenreiro

    2015-01-01

    Gottfried Leibniz generalized the derivation and integration, extending the operators from integer up to real, or even complex, orders. It is presently recognized that the resulting models capture long term memory effects difficult to describe by classical tools. Leon Chua generalized the set of lumped electrical elements that provide the building blocks in mathematical models. His proposal of the memristor and of higher order elements broadened the scope of variables and relationships embedded in the development of models. This paper follows the two directions and proposes a new logical step, by generalizing the concept of junction. Classical junctions interconnect system elements using simple algebraic restrictions. Nevertheless, this simplistic approach may be misleading in the presence of unexpected dynamical phenomena and requires including additional "parasitic" elements. The novel γ -junction includes, as special cases, the standard series and parallel connections and allows a new degree of freedom when building models. The proposal motivates the search for experimental and real world manifestations of the abstract conjectures.

  3. Observation Data Model Core Components, its Implementation in the Table Access Protocol Version 1.0

    NASA Astrophysics Data System (ADS)

    Tody, Doug; Micol, Alberto; Durand, Daniel; Louys, Mireille; Bonnarel, Francois; Schade, David; Dowler, Patrick; Michel, Laurent; Salgado, Jesus; Chilingarian, Igor; Rino, Bruno; de Dios Santander, Juan; Skoda, Petr; Tody, Doug; Micol, Alberto; Durand, Daniel; Louys, Mireille

    2011-10-01

    This document defines the core components of the Observation data model that are necessary to perform data discovery when querying data centers for observations of interest. It exposes use-cases to be carried out, explains the model and provides guidelines for its implementation as a data access service based on the Table Access Protocol (TAP). It aims at providing a simple model easy to understand and to implement by data providers that wish to publish their data into the Virtual Observatory. This interface integrates data modeling and data access aspects in a single service and is named ObsTAP. It will be referenced as such in the IVOA registries. There will be a separate document to cover the full Observation data model. In this document, the Observation Data Model Core Components (ObsCoreDM) defines the core components of queryable metadata required for global discovery of observational data. It is meant to allow a single query to be posed to TAP services at multiple sites to perform global data discovery without having to understand the details of the services present at each site. It defines a minimal set of basic metadata and thus allows for a reasonable cost of implementation by data providers. The combination of the ObsCoreDM with TAP is referred to as an ObsTAP service. As with most of the VO Data Models, ObsCoreDM makes use of STC, Utypes, Units and UCDs. The ObsCoreDM can be serialized as a VOTable. ObsCoreDM can make reference to more complete data models such as ObsProvDM (the Observation Provenance Data Model, to come), Characterisation DM, Spectrum DM or Simple Spectral Line Data Model (SSLDM).

  4. Compact-device model development for the energy-delay analysis of magneto-electric magnetic tunnel junction structures

    NASA Astrophysics Data System (ADS)

    Sharma, N.; Bird, J. P.; Dowben, P. A.; Marshall, A.

    2016-06-01

    We discuss the application of a novel class of device, the magneto-electric magnetic tunnel junction (ME-MTJ) to realize a variety of computational functions, including majority logic and the XNOR/XOR gate. We also develop a compact model to describe the operation of these devices, which function by utilizing the phenomenon of ‘voltage-controlled magnetism’ to switch the operational state of MTJs. The model breaks down the switching process into three key stages of operation: electrical-to-magnetic conversion, magnetization transfer, and final-state readout. Estimates for the switching energy and delay of these devices, obtained from this compact model, reveal significant improvements in both of these parameters when compared to conventional MTJs switched by spin-transfer-torque. In fact, the capacity to use the ME-MTJ to implement complex logical operations within a single device allows its energy costs to even approach those of low-power CMOS. The added benefits of non-volatility and compact circuit footprint, combined with their potential for heterogeneous integration with CMOS, make the ME devices of considerable interest for post-CMOS technology.

  5. Impaired Tight Junctions in Atopic Dermatitis Skin and in a Skin-Equivalent Model Treated with Interleukin-17.

    PubMed

    Yuki, Takuo; Tobiishi, Megumi; Kusaka-Kikushima, Ayumi; Ota, Yukiko; Tokura, Yoshiki

    2016-01-01

    Tight junction (TJ) dysfunction in the stratum granulosum leads to aberrant barrier function of the stratum corneum (SC) in the epidermis. However, it is unclear whether TJs are perturbed in atopic dermatitis (AD), a representative aberrant SC-related skin disease, and whether some factors related to AD pathogenesis induce TJ dysfunction. To address these issues, we investigated the alterations of TJs in AD skin and the effects of Th2 and Th17 cytokines on TJs in a skin-equivalent model. The levels of TJ proteins were determined in the epidermis of nonlesional and lesional skin sites of AD. Western blot and immunohistochemical analyses revealed that the levels of zonula occludens 1 were decreased in the nonlesional sites of AD, and the levels of zonula occludens 1 and claudin-1 were decreased in the lesional sites relative to the levels in skin from healthy subjects. Next, we examined the effects of interleukin (IL)-4, tumor necrosis factor-α, IL-17, and IL-22 on the TJ barrier in a skin-equivalent model. Only IL-17 impaired the TJ barrier. Furthermore, we observed a defect in filaggrin monomer degradation in the IL-17-treated skin model. Thus, TJs are dysfunctional in AD, at least partly, due to the effect of IL-17, which may result in an aberrant SC barrier. PMID:27588419

  6. Silicon fiber with p-n junction

    SciTech Connect

    Homa, D.; Cito, A.; Pickrell, G.; Hill, C.; Scott, B.

    2014-09-22

    In this study, we fabricated a p-n junction in a fiber with a phosphorous doped silicon core and fused silica cladding. The fibers were fabricated via a hybrid process of the core-suction and melt-draw techniques and maintained overall diameters ranging from 200 to 900 μm and core diameters of 20–800 μm. The p-n junction was formed by doping the fiber with boron and confirmed via the current-voltage characteristic. The demonstration of a p-n junction in a melt-drawn silicon core fiber paves the way for the seamless integration of optical and electronic devices in fibers.

  7. Particle image velocimetry measurements in a representative gas-cooled prismatic reactor core model for the estimation of bypass flow

    NASA Astrophysics Data System (ADS)

    Conder, Thomas E.

    Core bypass flow is considered one of the largest contributors to uncertainty in fuel temperature within the Modular High Temperature Gas-cooled Reactor (MHTGR). It refers to the coolant that navigates through the interstitial regions between the graphite fuel blocks instead of traveling through the designated coolant channels. These flows are of concern because they reduce the desired flow rates in the coolant channels, and thereby have significant influence on the maximum fuel element and coolant exit temperatures. Thus, accurate prediction of the bypass flow is important because it directly impacts core temperature, influencing the life and efficiency of the reactor. An experiment was conducted at Idaho National Laboratory to quantify the flow in the coolant channels in relation to the interstitial gaps between fuel blocks in a representative MHTGR core. Particle Image Velocimetry (PIV) was used to measure the flow fields within a simplified model, which comprised of a stacked junction of six partial fuel blocks with nine coolant tubes, separated by a 6mm gap width. The model had three sections: The upper plenum, upper block, and lower block. Model components were fabricated from clear, fused quartz where optical access was needed for the PIV measurements. Measurements were taken in three streamwise locations: in the upper plenum and in the midsection of the large and small fuel blocks. A laser light sheet was oriented parallel to the flow, while velocity fields were measured at millimeter intervals across the width of the model, totaling 3,276 PIV measurement locations. Inlet conditions were varied to incorporate laminar, transition, and turbulent flows in the coolant channels---all which produced laminar flow in the gap and non-uniform, turbulent flow in the upper plenum. The images were analyzed to create vector maps, and the data was exported for processing and compilation. The bypass flow was estimated by calculating the flow rates through the coolant

  8. A core-particle model for periodically focused ion beams withintense space-charge

    SciTech Connect

    Lund, Steven M.; Barnard, John J.; Bukh, Boris; Chawla, SurgreevR.; Chilton, Sven H.

    2006-08-28

    A core-particle model is derived to analyze transverse orbits of test particles evolving in the presence of a core ion beam that has uniform density within an elliptical cross-section. The model can be applied to both quadrupole and solenoidal focused beams in periodic or aperiodic lattices. Efficient analytical descriptions of electrostatic space-charge fields external to the beam core are derived to simplify model equations. Image charge effects are analyzed for an elliptical beam centered in a round, conducting pipe to estimate model corrections resulting from image charge nonlinearities. Transformations are employed to remove coherent flutter motion associated with oscillations of the ion beam core due to rapidly varying, linear applied focusing forces. Diagnostics for particle trajectories, Poincare phase-space projections, and single-particle emittances based on these transformations better illustrate the effects of nonlinear forces acting on particles evolving outside the core. A numerical code has been written based on this model. Example applications illustrate model characteristics. The core-particle model described has recently been applied to identify physical processes leading to space-charge transport limits for an rms matched beam in a periodic quadrupole focusing channel. Further characteristics of these processes are presented here.

  9. Ab Initio Study of 40Ca with an Importance Truncated No-Core Shell Model

    SciTech Connect

    Roth, R; Navratil, P

    2007-05-22

    We propose an importance truncation scheme for the no-core shell model, which enables converged calculations for nuclei well beyond the p-shell. It is based on an a priori measure for the importance of individual basis states constructed by means of many-body perturbation theory. Only the physically relevant states of the no-core model space are considered, which leads to a dramatic reduction of the basis dimension. We analyze the validity and efficiency of this truncation scheme using different realistic nucleon-nucleon interactions and compare to conventional no-core shell model calculations for {sup 4}He and {sup 16}O. Then, we present the first converged calculations for the ground state of {sup 40}Ca within no-core model spaces including up to 16{h_bar}{Omega}-excitations using realistic low-momentum interactions. The scheme is universal and can be easily applied to other quantum many-body problems.

  10. Dynamic Behavior of Arabidopsis eIF4A-III, Putative Core Protein of Exon Junction Complex: Fast Relocation to Nucleolus and Splicing Speckles under Hypoxia[W

    PubMed Central

    Koroleva, O.A.; Calder, G.; Pendle, A.F.; Kim, S.H.; Lewandowska, D.; Simpson, C.G.; Jones, I.M.; Brown, J.W.S.; Shaw, P.J.

    2009-01-01

    Here, we identify the Arabidopsis thaliana ortholog of the mammalian DEAD box helicase, eIF4A-III, the putative anchor protein of exon junction complex (EJC) on mRNA. Arabidopsis eIF4A-III interacts with an ortholog of the core EJC component, ALY/Ref, and colocalizes with other EJC components, such as Mago, Y14, and RNPS1, suggesting a similar function in EJC assembly to animal eIF4A-III. A green fluorescent protein (GFP)-eIF4A-III fusion protein showed localization to several subnuclear domains: to the nucleoplasm during normal growth and to the nucleolus and splicing speckles in response to hypoxia. Treatment with the respiratory inhibitor sodium azide produced an identical response to the hypoxia stress. Treatment with the proteasome inhibitor MG132 led to accumulation of GFP-eIF4A-III mainly in the nucleolus, suggesting that transition of eIF4A-III between subnuclear domains and/or accumulation in nuclear speckles is controlled by proteolysis-labile factors. As revealed by fluorescence recovery after photobleaching analysis, the nucleoplasmic fraction was highly mobile, while the speckles were the least mobile fractions, and the nucleolar fraction had an intermediate mobility. Sequestration of eIF4A-III into nuclear pools with different mobility is likely to reflect the transcriptional and mRNA processing state of the cell. PMID:19435936

  11. Simple phenomenological modeling of transition-region capacitance of forward-biased p-n junction diodes and transistor diodes

    NASA Technical Reports Server (NTRS)

    Lindholm, F. A.

    1982-01-01

    The derivation of a simple expression for the capacitance C(V) associated with the transition region of a p-n junction under a forward bias is derived by phenomenological reasoning. The treatment of C(V) is based on the conventional Shockley equations, and simpler expressions for C(V) result that are in general accord with the previous analytical and numerical results. C(V) consists of two components resulting from changes in majority carrier concentration and from free hole and electron accumulation in the space-charge region. The space-charge region is conceived as the intrinsic region of an n-i-p structure for a space-charge region markedly wider than the extrinsic Debye lengths at its edges. This region is excited in the sense that the forward bias creates hole and electron densities orders of magnitude larger than those in equilibrium. The recent Shirts-Gordon (1979) modeling of the space-charge region using a dielectric response function is contrasted with the more conventional Schottky-Shockley modeling.

  12. Sustained phenotypic reversion of junctional epidermolysis bullosa dog keratinocytes: Establishment of an immunocompetent animal model for cutaneous gene therapy

    SciTech Connect

    Spirito, Flavia; Capt, Annabelle; Rio, Marcela Del; Larcher, Fernando; Guaguere, Eric; Danos, Olivier; Meneguzzi, Guerrino . E-mail: meneguzz@unice.fr

    2006-01-20

    Gene transfer represents the unique therapeutic issue for a number of inherited skin disorders including junctional epidermolysis bullosa (JEB), an untreatable genodermatose caused by mutations in the adhesion ligand laminin 5 ({alpha}3{beta}3{gamma}2) that is secreted in the extracellular matrix by the epidermal basal keratinocytes. Because gene therapy protocols require validation in animal models, we have phenotypically reverted by oncoretroviral transfer of the curative gene the keratinocytes isolated from dogs with a spontaneous form of JEB associated with a genetic mutation in the {alpha}3 chain of laminin 5. We show that the transduced dog JEB keratinocytes: (1) display a sustained secretion of laminin 5 in the extracellular matrix; (2) recover the adhesion, proliferation, and clonogenic capacity of wild-type keratinocytes; (3) generate fully differentiated stratified epithelia that after grafting on immunocompromised mice produce phenotypically normal skin and sustain permanent expression of the transgene. We validate an animal model that appears particularly suitable to demonstrate feasibility, efficacy, and safety of genetic therapeutic strategies for cutaneous disorders before undertaking human clinical trials.

  13. Characterization, Modeling and Design Parameters Identification of Silicon Carbide Junction Field Effect Transistor for Temperature Sensor Applications

    PubMed Central

    Salah, Tarek Ben; Khachroumi, Sofiane; Morel, Hervé

    2010-01-01

    Sensor technology is moving towards wide-band-gap semiconductors providing high temperature capable devices. Indeed, the higher thermal conductivity of silicon carbide, (three times more than silicon), permits better heat dissipation and allows better cooling and temperature management. Though many temperature sensors have already been published, little endeavours have been invested in the study of silicon carbide junction field effect devices (SiC-JFET) as a temperature sensor. SiC-JFETs devices are now mature enough and it is close to be commercialized. The use of its specific properties versus temperatures is the major focus of this paper. The SiC-JFETs output current-voltage characteristics are characterized at different temperatures. The saturation current and its on-resistance versus temperature are successfully extracted. It is demonstrated that these parameters are proportional to the absolute temperature. A physics-based model is also presented. Relationships between on-resistance and saturation current versus temperature are introduced. A comparative study between experimental data and simulation results is conducted. Important to note, the proposed model and the experimental results reflect a successful agreement as far as a temperature sensor is concerned. PMID:22315547

  14. Electrical signal transmission and gap junction regulation in a bone cell network: a cable model for an osteon

    NASA Technical Reports Server (NTRS)

    Zhang, D.; Cowin, S. C.; Weinbaum, S.

    1997-01-01

    A cable model is formulated to estimate the spatial distribution of intracellular electric potential and current, from the cement line to the lumen of an osteon, as the frequency of the loading and the conductance of the gap junction are altered. The model predicts that the characteristic diffusion time for the spread of current along the membrane of the osteocytic processes, 0.03 sec, is nearly the same as the predicted pore pressure relaxation time in Zeng et al. (Annals of Biomedical Engineering. 1994) for the draining of the bone fluid into the osteonal canal. This approximate equality of characteristic times causes the cable to behave as a high-pass, low-pass filter cascade with a maximum in the spectral response for the intracellular potential at approximately 30 Hz. This behavior could be related to the experiments of Rubin and McLeod (Osteoporosis, Academic Press, 1996) which show that live bone appears to be selectively responsive to mechanical loading in a specific frequency range (15-30 Hz) for several species.

  15. Silver nanoparticles induce tight junction disruption and astrocyte neurotoxicity in a rat blood–brain barrier primary triple coculture model

    PubMed Central

    Xu, Liming; Dan, Mo; Shao, Anliang; Cheng, Xiang; Zhang, Cuiping; Yokel, Robert A; Takemura, Taro; Hanagata, Nobutaka; Niwa, Masami; Watanabe, Daisuke

    2015-01-01

    Background Silver nanoparticles (Ag-NPs) can enter the brain and induce neurotoxicity. However, the toxicity of Ag-NPs on the blood–brain barrier (BBB) and the underlying mechanism(s) of action on the BBB and the brain are not well understood. Method To investigate Ag-NP suspension (Ag-NPS)-induced toxicity, a triple coculture BBB model of rat brain microvascular endothelial cells, pericytes, and astrocytes was established. The BBB permeability and tight junction protein expression in response to Ag-NPS, NP-released Ag ions, and polystyrene-NP exposure were investigated. Ultrastructural changes of the microvascular endothelial cells, pericytes, and astrocytes were observed using transmission electron microscopy (TEM). Global gene expression of astrocytes was measured using a DNA microarray. Results A triple coculture BBB model of primary rat brain microvascular endothelial cells, pericytes, and astrocytes was established, with the transendothelial electrical resistance values >200 Ω·cm2. After Ag-NPS exposure for 24 hours, the BBB permeability was significantly increased and expression of the tight junction (TJ) protein ZO-1 was decreased. Discontinuous TJs were also observed between microvascular endothelial cells. After Ag-NPS exposure, severe mitochondrial shrinkage, vacuolations, endoplasmic reticulum expansion, and Ag-NPs were observed in astrocytes by TEM. Global gene expression analysis showed that three genes were upregulated and 20 genes were downregulated in astrocytes treated with Ag-NPS. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis showed that the 23 genes were associated with metabolic processes, biosynthetic processes, response to stimuli, cell death, the MAPK pathway, and so on. No GO term and KEGG pathways were changed in the released-ion or polystyrene-NP groups. Ag-NPS inhibited the antioxidant defense of the astrocytes by increasing thioredoxin interacting protein, which inhibits the Trx system, and

  16. Diffused junction p(+)-n solar cells in bulk GaAs. II - Device characterization and modelling

    NASA Technical Reports Server (NTRS)

    Keeney, R.; Sundaram, L. M. G.; Rode, H.; Bhat, I.; Ghandhi, S. K.; Borrego, J. M.

    1984-01-01

    The photovoltaic characteristics of p(+)-n junction solar cells fabricated on bulk GaAs by an open tube diffusion technique are presented in detail. Quantum efficiency measurements were analyzed and compared to computer simulations of the cell structure in order to determine material parameters such as diffusion length, surface recombination velocity and junction depth. From the results obtained it is projected that proper optimization of the cell parameters can increase the efficiency of the cells to close to 20 percent.

  17. Toward a mineral physics reference model for the Moon’s core

    PubMed Central

    Antonangeli, Daniele; Morard, Guillaume; Schmerr, Nicholas C.; Komabayashi, Tetsuya; Krisch, Michael; Fiquet, Guillaume; Fei, Yingwei

    2015-01-01

    The physical properties of iron (Fe) at high pressure and high temperature are crucial for understanding the chemical composition, evolution, and dynamics of planetary interiors. Indeed, the inner structures of the telluric planets all share a similar layered nature: a central metallic core composed mostly of iron, surrounded by a silicate mantle, and a thin, chemically differentiated crust. To date, most studies of iron have focused on the hexagonal closed packed (hcp, or ε) phase, as ε-Fe is likely stable across the pressure and temperature conditions of Earth’s core. However, at the more moderate pressures characteristic of the cores of smaller planetary bodies, such as the Moon, Mercury, or Mars, iron takes on a face-centered cubic (fcc, or γ) structure. Here we present compressional and shear wave sound velocity and density measurements of γ-Fe at high pressures and high temperatures, which are needed to develop accurate seismic models of planetary interiors. Our results indicate that the seismic velocities proposed for the Moon’s inner core by a recent reanalysis of Apollo seismic data are well below those of γ-Fe. Our dataset thus provides strong constraints to seismic models of the lunar core and cores of small telluric planets. This allows us to propose a direct compositional and velocity model for the Moon’s core. PMID:25775531

  18. Physically-Derived Dynamical Cores in Atmospheric General Circulation Models

    NASA Technical Reports Server (NTRS)

    Rood, Richard B.; Lin, Shian-Kiann

    1999-01-01

    The algorithm chosen to represent the advection in atmospheric models is often used as the primary attribute to classify the model. Meteorological models are generally classified as spectral or grid point, with the term grid point implying discretization using finite differences. These traditional approaches have a number of shortcomings that render them non-physical. That is, they provide approximate solutions to the conservation equations that do not obey the fundamental laws of physics. The most commonly discussed shortcomings are overshoots and undershoots which manifest themselves most overtly in the constituent continuity equation. For this reason many climate models have special algorithms to model water vapor advection. This talk focuses on the development of an atmospheric general circulation model which uses a consistent physically-based advection algorithm in all aspects of the model formulation. The shallow-water model of Lin and Rood (QJRMS, 1997) is generalized to three dimensions and combined with the physics parameterizations of NCAR's Community Climate Model. The scientific motivation for the development is to increase the integrity of the underlying fluid dynamics so that the physics terms can be more effectively isolated, examined, and improved. The expected benefits of the new model are discussed and results from the initial integrations will be presented.

  19. Physically-Derived Dynamical Cores in Atmospheric General Circulation Models

    NASA Technical Reports Server (NTRS)

    Rood, Richard B.; Lin, Shian-Jiann

    1999-01-01

    The algorithm chosen to represent the advection in atmospheric models is often used as the primary attribute to classify the model. Meteorological models are generally classified as spectral or grid point, with the term grid point implying discretization using finite differences. These traditional approaches have a number of shortcomings that render them non-physical. That is, they provide approximate solutions to the conservation equations that do not obey the fundamental laws of physics. The most commonly discussed shortcomings are overshoots and undershoots which manifest themselves most overtly in the constituent continuity equation. For this reason many climate models have special algorithms to model water vapor advection. This talk focuses on the development of an atmospheric general circulation model which uses a consistent physically-based advection algorithm in all aspects of the model formulation. The shallow-water model is generalized to three dimensions and combined with the physics parameterizations of NCAR's Community Climate Model. The scientific motivation for the development is to increase the integrity of the underlying fluid dynamics so that the physics terms can be more effectively isolated, examined, and improved. The expected benefits of the new model are discussed and results from the initial integrations will be presented.

  20. Flow throughout the Earth's core inverted from geomagnetic observations and numerical dynamo models

    NASA Astrophysics Data System (ADS)

    Aubert, Julien

    2013-02-01

    This paper introduces inverse geodynamo modelling, a framework imaging flow throughout the Earth's core from observations of the geomagnetic field and its secular variation. The necessary prior information is provided by statistics from 3-D and self-consistent numerical simulations of the geodynamo. The core method is a linear estimation (or Kalman filtering) procedure, combined with standard frozen-flux core surface flow inversions in order to handle the non-linearity of the problem. The inversion scheme is successfully validated using synthetic test experiments. A set of four numerical dynamo models of increasing physical complexity and similarity to the geomagnetic field is then used to invert for flows at single epochs within the period 1970-2010, using data from the geomagnetic field models CM4 and gufm-sat-Q3. The resulting core surface flows generally provide satisfactory fits to the secular variation within the level of modelled errors, and robustly reproduce the most commonly observed patterns while additionally presenting a high degree of equatorial symmetry. The corresponding deep flows present a robust, highly columnar structure once rotational constraints are enforced to a high level in the prior models, with patterns strikingly similar to the results of quasi-geostrophic inversions. In particular, the presence of a persistent planetary scale, eccentric westward columnar gyre circling around the inner core is confirmed. The strength of the approach is to uniquely determine the trade-off between fit to the data and complexity of the solution by clearly connecting it to first principle physics; statistical deviations observed between the inverted flows and the standard model behaviour can then be used to quantitatively assess the shortcomings of the physical modelling. Such deviations include the (i) westwards and (ii) hemispherical character of the eccentric gyre. A prior model with angular momentum conservation of the core-mantle inner-core system, and

  1. An investigation of ab initio shell-model interactions derived by no-core shell model

    NASA Astrophysics Data System (ADS)

    Wang, XiaoBao; Dong, GuoXiang; Li, QingFeng; Shen, CaiWan; Yu, ShaoYing

    2016-09-01

    The microscopic shell-model effective interactions are mainly based on the many-body perturbation theory (MBPT), the first work of which can be traced to Brown and Kuo's first attempt in 1966, derived from the Hamada-Johnston nucleon-nucleon potential. However, the convergence of the MBPT is still unclear. On the other hand, ab initio theories, such as Green's function Monte Carlo (GFMC), no-core shell model (NCSM), and coupled-cluster theory with single and double excitations (CCSD), have made many progress in recent years. However, due to the increasing demanding of computing resources, these ab initio applications are usually limited to nuclei with mass up to A = 16. Recently, people have realized the ab initio construction of valence-space effective interactions, which is obtained through a second-time renormalization, or to be more exactly, projecting the full-manybody Hamiltonian into core, one-body, and two-body cluster parts. In this paper, we present the investigation of such ab initio shell-model interactions, by the recent derived sd-shell effective interactions based on effective J-matrix Inverse Scattering Potential (JISP) and chiral effective-field theory (EFT) through NCSM. In this work, we have seen the similarity between the ab initio shellmodel interactions and the interactions obtained by MBPT or by empirical fitting. Without the inclusion of three-body (3-bd) force, the ab initio shell-model interactions still share similar defects with the microscopic interactions by MBPT, i.e., T = 1 channel is more attractive while T = 0 channel is more repulsive than empirical interactions. The progress to include more many-body correlations and 3-bd force is still badly needed, to see whether such efforts of ab initio shell-model interactions can reach similar precision as the interactions fitted to experimental data.

  2. Reduction of solar cell efficiency by edge defects across the back-surface-field junction - A developed perimeter model

    NASA Technical Reports Server (NTRS)

    Sah, C. T.; Yamakawa, K. A.; Lutwack, R.

    1982-01-01

    Material imperfections, impurity clusters and fabrication defects across the back-surface-field junction can degrade the performance of high-efficiency solar cells. The degradation from defects appearing on the circumference of a solar cell is analyzed using a two-region developed perimeter device model. The width of the defective perimeter region is characterized by the range or the distance-of-influence of the defective edge and this width is about two diffusion lengths. The defective edge is characterized by a surface recombination velocity. Family of theoretical curves and numerical examples are presented to show that significant reduction of open-circuit voltage can occur in high-efficiency cells which are thin compared with the diffusion length. In one example, the degradation is decreased from 135 mV to 75 mV when the cell size is increased from 10 to 100 times the diffusion length in a thin cell whose thickness is 1% of the diffusion length.

  3. Modeling the Early Phenotype at the Neuromuscular Junction of Spinal Muscular Atrophy Using Patient-Derived iPSCs

    PubMed Central

    Yoshida, Michiko; Kitaoka, Shiho; Egawa, Naohiro; Yamane, Mayu; Ikeda, Ryunosuke; Tsukita, Kayoko; Amano, Naoki; Watanabe, Akira; Morimoto, Masafumi; Takahashi, Jun; Hosoi, Hajime; Nakahata, Tatsutoshi; Inoue, Haruhisa; Saito, Megumu K.

    2015-01-01

    Summary Spinal muscular atrophy (SMA) is a neuromuscular disorder caused by mutations of the survival of motor neuron 1 (SMN1) gene. In the pathogenesis of SMA, pathological changes of the neuromuscular junction (NMJ) precede the motor neuronal loss. Therefore, it is critical to evaluate the NMJ formed by SMA patients’ motor neurons (MNs), and to identify drugs that can restore the normal condition. We generated NMJ-like structures using MNs derived from SMA patient-specific induced pluripotent stem cells (iPSCs), and found that the clustering of the acetylcholine receptor (AChR) is significantly impaired. Valproic acid and antisense oligonucleotide treatment ameliorated the AChR clustering defects, leading to an increase in the level of full-length SMN transcripts. Thus, the current in vitro model of AChR clustering using SMA patient-derived iPSCs is useful to dissect the pathophysiological mechanisms underlying the development of SMA, and to evaluate the efficacy of new therapeutic approaches. PMID:25801509

  4. Structural and Functional Abnormalities of the Neuromuscular Junction in the Trembler-J Homozygote Mouse Model of Congenital Hypomyelinating Neuropathy.

    PubMed

    Scurry, Alexandra N; Heredia, Dante J; Feng, Cheng-Yuan; Gephart, Gregory B; Hennig, Grant W; Gould, Thomas W

    2016-04-01

    Mutations in peripheral myelin protein 22 (PMP22) result in the most common form of Charcot-Marie-Tooth (CMT) disease, CMT1A. This hereditary peripheral neuropathy is characterized by dysmyelination of peripheral nerves, reduced nerve conduction velocity, and muscle weakness. APMP22point mutation in L16P (leucine 16 to proline) underlies a form of human CMT1A as well as the Trembler-J mouse model of CMT1A. Homozygote Trembler-J mice (Tr(J)) die early postnatally, fail to make peripheral myelin, and, therefore, are more similar to patients with congenital hypomyelinating neuropathy than those with CMT1A. Because recent studies of inherited neuropathies in humans and mice have demonstrated that dysfunction and degeneration of neuromuscular synapses or junctions (NMJs) often precede impairments in axonal conduction, we examined the structure and function of NMJs inTr(J)mice. Although synapses appeared to be normally innervated even in end-stageTr(J)mice, the growth and maturation of the NMJs were altered. In addition, the amplitudes of nerve-evoked muscle endplate potentials were reduced and there was transmission failure during sustained nerve stimulation. These results suggest that the severe congenital hypomyelinating neuropathy that characterizesTr(J)mice results in structural and functional deficits of the developing NMJ. PMID:26921370

  5. A core-particle model for periodically focused ion beams with intense space-charge

    NASA Astrophysics Data System (ADS)

    Lund, Steven M.; Barnard, John J.; Bukh, Boris; Chawla, Sugreev R.; Chilton, Sven H.

    2007-07-01

    A core-particle (CP) model is derived to analyze transverse orbits of test-particles evolving in the presence of a core ion beam that has uniform density within an elliptical cross-section. The model can be applied to both quadrupole and solenoidal focused beams in periodic or aperiodic lattices. Efficient analytical descriptions of electrostatic space-charge fields external to the beam core are derived to simplify model equations. Image-charge effects are analyzed for an elliptical beam centered in a round, conducting pipe to estimate model corrections resulting from image-charge nonlinearities. Transformations are employed in diagnostics to remove coherent flutter motion associated with oscillations of the ion beam core due to rapidly varying, linear applied-focusing forces. Diagnostics for particle trajectories, Poincaré phase-space projections, and single-particle emittances based on these transformations better illustrate the effects of nonlinear forces acting on particles evolving outside the core. A numerical code has been written based on this model. Example applications illustrate model characteristics. The CP model described has recently been applied to identify physical processes leading to space-charge transport limits for an rms-envelope matched beam in a periodic quadrupole focusing-channel [S.M. Lund, S.R. Chawla, Nucl. Instr. and Meth. A 561 (2006) 203]. Further characteristics of these processes are presented here.

  6. Defining the estimated core genome of bacterial populations using a Bayesian decision model.

    PubMed

    van Tonder, Andries J; Mistry, Shilan; Bray, James E; Hill, Dorothea M C; Cody, Alison J; Farmer, Chris L; Klugman, Keith P; von Gottberg, Anne; Bentley, Stephen D; Parkhill, Julian; Jolley, Keith A; Maiden, Martin C J; Brueggemann, Angela B

    2014-08-01

    The bacterial core genome is of intense interest and the volume of whole genome sequence data in the public domain available to investigate it has increased dramatically. The aim of our study was to develop a model to estimate the bacterial core genome from next-generation whole genome sequencing data and use this model to identify novel genes associated with important biological functions. Five bacterial datasets were analysed, comprising 2096 genomes in total. We developed a Bayesian decision model to estimate the number of core genes, calculated pairwise evolutionary distances (p-distances) based on nucleotide sequence diversity, and plotted the median p-distance for each core gene relative to its genome location. We designed visually-informative genome diagrams to depict areas of interest in genomes. Case studies demonstrated how the model could identify areas for further study, e.g. 25% of the core genes with higher sequence diversity in the Campylobacter jejuni and Neisseria meningitidis genomes encoded hypothetical proteins. The core gene with the highest p-distance value in C. jejuni was annotated in the reference genome as a putative hydrolase, but further work revealed that it shared sequence homology with beta-lactamase/metallo-beta-lactamases (enzymes that provide resistance to a range of broad-spectrum antibiotics) and thioredoxin reductase genes (which reduce oxidative stress and are essential for DNA replication) in other C. jejuni genomes. Our Bayesian model of estimating the core genome is principled, easy to use and can be applied to large genome datasets. This study also highlighted the lack of knowledge currently available for many core genes in bacterial genomes of significant global public health importance. PMID:25144616

  7. Structure and thermodynamics of core-softened models for alcohols

    SciTech Connect

    Munaò, Gianmarco; Urbic, Tomaz

    2015-06-07

    The phase behavior and the fluid structure of coarse-grain models for alcohols are studied by means of reference interaction site model (RISM) theory and Monte Carlo simulations. Specifically, we model ethanol and 1-propanol as linear rigid chains constituted by three (trimers) and four (tetramers) partially fused spheres, respectively. Thermodynamic properties of these models are examined in the RISM context, by employing closed formulæ for the calculation of free energy and pressure. Gas-liquid coexistence curves for trimers and tetramers are reported and compared with already existing data for a dimer model of methanol. Critical temperatures slightly increase with the number of CH{sub 2} groups in the chain, while critical pressures and densities decrease. Such a behavior qualitatively reproduces the trend observed in experiments on methanol, ethanol, and 1-propanol and suggests that our coarse-grain models, despite their simplicity, can reproduce the essential features of the phase behavior of such alcohols. The fluid structure of these models is investigated by computing radial distribution function g{sub ij}(r) and static structure factor S{sub ij}(k); the latter shows the presence of a low−k peak at intermediate-high packing fractions and low temperatures, suggesting the presence of aggregates for both trimers and tetramers.

  8. Consistent treatment of viscoelastic effects at junctions in one-dimensional blood flow models

    NASA Astrophysics Data System (ADS)

    Müller, Lucas O.; Leugering, Günter; Blanco, Pablo J.

    2016-06-01

    While the numerical discretization of one-dimensional blood flow models for vessels with viscoelastic wall properties is widely established, there is still no clear approach on how to couple one-dimensional segments that compose a network of viscoelastic vessels. In particular for Voigt-type viscoelastic models, assumptions with regard to boundary conditions have to be made, which normally result in neglecting the viscoelastic effect at the edge of vessels. Here we propose a coupling strategy that takes advantage of a hyperbolic reformulation of the original model and the inherent information of the resulting system. We show that applying proper coupling conditions is fundamental for preserving the physical coherence and numerical accuracy of the solution in both academic and physiologically relevant cases.

  9. State space modeling of reactor core in a pressurized water reactor

    SciTech Connect

    Ashaari, A.; Ahmad, T.; M, Wan Munirah W.; Shamsuddin, Mustaffa; Abdullah, M. Adib

    2014-07-10

    The power control system of a nuclear reactor is the key system that ensures a safe operation for a nuclear power plant. However, a mathematical model of a nuclear power plant is in the form of nonlinear process and time dependent that give very hard to be described. One of the important components of a Pressurized Water Reactor is the Reactor core. The aim of this study is to analyze the performance of power produced from a reactor core using temperature of the moderator as an input. Mathematical representation of the state space model of the reactor core control system is presented and analyzed in this paper. The data and parameters are taken from a real time VVER-type Pressurized Water Reactor and will be verified using Matlab and Simulink. Based on the simulation conducted, the results show that the temperature of the moderator plays an important role in determining the power of reactor core.

  10. State space modeling of reactor core in a pressurized water reactor

    NASA Astrophysics Data System (ADS)

    Ashaari, A.; Ahmad, T.; Shamsuddin, Mustaffa; M, Wan Munirah W.; Abdullah, M. Adib

    2014-07-01

    The power control system of a nuclear reactor is the key system that ensures a safe operation for a nuclear power plant. However, a mathematical model of a nuclear power plant is in the form of nonlinear process and time dependent that give very hard to be described. One of the important components of a Pressurized Water Reactor is the Reactor core. The aim of this study is to analyze the performance of power produced from a reactor core using temperature of the moderator as an input. Mathematical representation of the state space model of the reactor core control system is presented and analyzed in this paper. The data and parameters are taken from a real time VVER-type Pressurized Water Reactor and will be verified using Matlab and Simulink. Based on the simulation conducted, the results show that the temperature of the moderator plays an important role in determining the power of reactor core.

  11. Confocal Annular Josephson Tunnel Junctions

    NASA Astrophysics Data System (ADS)

    Monaco, Roberto

    2016-04-01

    The physics of Josephson tunnel junctions drastically depends on their geometrical configurations and here we show that also tiny geometrical details play a determinant role. More specifically, we develop the theory of short and long annular Josephson tunnel junctions delimited by two confocal ellipses. The behavior of a circular annular Josephson tunnel junction is then seen to be simply a special case of the above result. For junctions having a normalized perimeter less than one, the threshold curves in the presence of an in-plane magnetic field of arbitrary orientations are derived and computed even in the case with trapped Josephson vortices. For longer junctions, a numerical analysis is carried out after the derivation of the appropriate motion equation for the Josephson phase. We found that the system is modeled by a modified and perturbed sine-Gordon equation with a space-dependent effective Josephson penetration length inversely proportional to the local junction width. Both the fluxon statics and dynamics are deeply affected by the non-uniform annulus width. Static zero-field multiple-fluxon solutions exist even in the presence of a large bias current. The tangential velocity of a traveling fluxon is not determined by the balance between the driving and drag forces due to the dissipative losses. Furthermore, the fluxon motion is characterized by a strong radial inward acceleration which causes electromagnetic radiation concentrated at the ellipse equatorial points.

  12. Confocal Annular Josephson Tunnel Junctions

    NASA Astrophysics Data System (ADS)

    Monaco, Roberto

    2016-09-01

    The physics of Josephson tunnel junctions drastically depends on their geometrical configurations and here we show that also tiny geometrical details play a determinant role. More specifically, we develop the theory of short and long annular Josephson tunnel junctions delimited by two confocal ellipses. The behavior of a circular annular Josephson tunnel junction is then seen to be simply a special case of the above result. For junctions having a normalized perimeter less than one, the threshold curves in the presence of an in-plane magnetic field of arbitrary orientations are derived and computed even in the case with trapped Josephson vortices. For longer junctions, a numerical analysis is carried out after the derivation of the appropriate motion equation for the Josephson phase. We found that the system is modeled by a modified and perturbed sine-Gordon equation with a space-dependent effective Josephson penetration length inversely proportional to the local junction width. Both the fluxon statics and dynamics are deeply affected by the non-uniform annulus width. Static zero-field multiple-fluxon solutions exist even in the presence of a large bias current. The tangential velocity of a traveling fluxon is not determined by the balance between the driving and drag forces due to the dissipative losses. Furthermore, the fluxon motion is characterized by a strong radial inward acceleration which causes electromagnetic radiation concentrated at the ellipse equatorial points.

  13. String junction as a baryonic constituent

    NASA Astrophysics Data System (ADS)

    Kalashnikova, Yu. S.; Nefediev, A. V.

    1996-02-01

    We extend the model for QCD string with quarks to consider the Mercedes Benz string configuration describing the three-quark baryon. Under the assumption of adiabatic separation of quark and string junction motion we formulate and solve the classical equation of motion for the junction. We dare to quantize the motion of the junction, and discuss the impact of these modes on the baryon spectra.

  14. Global/Regional Integrated Model System (GRIMs): Double Fourier Series (DFS) Dynamical Core

    NASA Astrophysics Data System (ADS)

    Koo, M.; Hong, S.

    2013-12-01

    A multi-scale atmospheric/oceanic model system with unified physics, the Global/Regional Integrated Model system (GRIMs) has been created for use in numerical weather prediction, seasonal simulations, and climate research projects, from global to regional scales. It includes not only the model code, but also the test cases and scripts. The model system is developed and practiced by taking advantage of both operational and research applications. We outlines the history of GRIMs, its current applications, and plans for future development, providing a summary useful to present and future users. In addition to the traditional spherical harmonics (SPH) dynamical core, a new spectral method with a double Fourier series (DFS) is available in the GRIMs (Table 1). The new DFS dynamical core with full physics is evaluated against the SPH dynamical core in terms of short-range forecast capability for a heavy rainfall event and seasonal simulation framework. Comparison of the two dynamical cores demonstrates that the new DFS dynamical core exhibits performance comparable to the SPH in terms of simulated climatology accuracy and the forecast of a heavy rainfall event. Most importantly, the DFS algorithm guarantees improved computational efficiency in the cluster computer as the model resolution increases, which is consistent with theoretical values computed from the dry primitive equation model framework of Cheong (Fig. 1). The current study shows that, at higher resolutions, the DFS approach can be a competitive dynamical core because the DFS algorithm provides the advantages of both the spectral method for high numerical accuracy and the grid-point method for high performance computing in the aspect of computational cost. GRIMs dynamical cores

  15. CAM-SE: A scalable spectral element dynamical core for the Community Atmosphere Model.

    SciTech Connect

    Dennis, John; Edwards, Jim; Evans, Kate J; Guba, O; Lauritzen, Peter; Mirin, Art; St.-Cyr, Amik; Taylor, Mark; Worley, Patrick H

    2012-01-01

    The Community Atmosphere Model (CAM) version 5 includes a spectral element dynamical core option from NCAR's High-Order Method Modeling Environment. It is a continuous Galerkin spectral finite element method designed for fully unstructured quadrilateral meshes. The current configurations in CAM are based on the cubed-sphere grid. The main motivation for including a spectral element dynamical core is to improve the scalability of CAM by allowing quasi-uniform grids for the sphere that do not require polar filters. In addition, the approach provides other state-of-the-art capabilities such as improved conservation properties. Spectral elements are used for the horizontal discretization, while most other aspects of the dynamical core are a hybrid of well tested techniques from CAM's finite volume and global spectral dynamical core options. Here we first give a overview of the spectral element dynamical core as used in CAM. We then give scalability and performance results from CAM running with three different dynamical core options within the Community Earth System Model, using a pre-industrial time-slice configuration. We focus on high resolution simulations of 1/4 degree, 1/8 degree, and T340 spectral truncation.

  16. Developing a theory of the strategic core of teams: a role composition model of team performance.

    PubMed

    Humphrey, Stephen E; Morgeson, Frederick P; Mannor, Michael J

    2009-01-01

    Although numerous models of team performance have been articulated over the past 20 years, these models have primarily focused on the individual attribute approach to team composition. The authors utilized a role composition approach, which investigates how the characteristics of a set of role holders impact team effectiveness, to develop a theory of the strategic core of teams. Their theory suggests that certain team roles are most important for team performance and that the characteristics of the role holders in the "core" of the team are more important for overall team performance. This theory was tested in 778 teams drawn from 29 years of major league baseball (1974'-2002). Results demonstrate that although high levels of experience and job-related skill are important predictors of team performance, the relationships between these constructs and team performance are significantly stronger when the characteristics are possessed by core role holders (as opposed to non-core role holders). Further, teams that invest more of their financial resources in these core roles are able to leverage such investments into significantly improved performance. These results have implications for team composition models, as they suggest a new method for considering individual contributions to a team's success that shifts the focus onto core roles. (PsycINFO Database Record (c) 2009 APA, all rights reserved). PMID:19186895

  17. Symplectic Symmetry and the Ab Initio No-Core Shell Model

    SciTech Connect

    Draayer, Jerry P.; Dytrych, Tomas; Sviratcheva, Kristina D.; Bahri, Chairul; Vary, James P.; /Iowa State U. /LLNL, Livermore /SLAC

    2007-03-14

    The symplectic symmetry of eigenstates for the 0{sub gs}{sup +} in {sup 16}O and the 0{sub gs}{sup +} and lowest 2{sup +} and 4{sup +} configurations of {sup 12}C that are well-converged within the framework of the no-core shell model with the JISP16 realistic interaction is examined. These states are found to project at the 85-90% level onto very few symplectic representations including the most deformed configuration, which confirms the importance of a symplectic no-core shell model and reaffirms the relevance of the Elliott SU(3) model upon which the symplectic scheme is built.

  18. A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models

    SciTech Connect

    Held, I.M. ); Suarez, M.J. )

    1994-10-01

    A benchmark calculation is proposed for evaluating the dynamical cores of atmospheric general circulation models independently of the physical parameterizations. The test focuses on the long-term statistical properties of a fully developed general circulation; thus, it is particularly appropriate for intercomparing the dynamics used in climate models. To illustrate the use of this benchmark, two very different atmospheric dynamical cores - one spectral, one finite difference - are compared. It is found that the long-term statistics produced by the two models are very similar. Selected results from these calculations are presented to initiate the intercomparison. 17 refs., 4 figs.

  19. A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models

    NASA Technical Reports Server (NTRS)

    Held, Isaac M.; Suarez, Max J.

    1994-01-01

    A benchmark calculation is proposed for evaluating the dynamical cores of atmospheric general circulation models (GCMs) independently of the physical parameterizations. The test focuses on the long-term statistical properties of a fully developed general circulation; thus, it is particularly appropriate for intercomparing the dynamics used in climate models. To illustrate the use of this benchmark, two very different atmospheric dynamical cores--one spectral, one finite difference--are compared. It is found that the long-term statistics produced by the two models are very similar. Selected results from these calculations are presented to initiate the intercomparison.

  20. Entropy-Driven Folding of an RNA Helical Junction: An Isothermal Titration Calorimetric Analysis of the Hammerhead Ribozyme†

    PubMed Central

    Mikulecky, Peter J.; Takach, Jennifer C.; Feig, Andrew L.

    2008-01-01

    Helical junctions are extremely common motifs in naturally occurring RNAs, but little is known about the thermodynamics that drive their folding. Studies of junction folding face several challenges: non-two-state folding behavior, superposition of secondary and tertiary structural energetics, and drastically opposing enthalpic and entropic contributions to folding. Here we describe a thermodynamic dissection of the folding of the hammerhead ribozyme, a three-way RNA helical junction, by using isothermal titration calorimetry of bimolecular RNA constructs. By using this method, we show that tertiary folding of the hammerhead core occurs with a highly unfavorable enthalpy change, and is therefore entropically driven. Furthermore, the enthalpies and heat capacities of core folding are the same whether supported by monovalent or divalent ions. These properties appear to be general to the core sequence of bimolecular hammerhead constructs. We present a model for the ion-induced folding of the hammerhead core that is similar to those advanced for the folding of much larger RNAs, involving ion-induced collapse to a structured, non-native state accompanied by rearrangement of core residues to produce the native fold. In agreement with previous enzymological and structural studies, our thermodynamic data suggest that the hammerhead structure is stabilized in vitro predominantly by diffusely bound ions. Our approach addresses several significant challenges that accompany the study of junction folding, and should prove useful in defining the thermodynamic determinants of stability in these important RNA motifs. PMID:15134461

  1. Entropy-driven folding of an RNA helical junction: an isothermal titration calorimetric analysis of the hammerhead ribozyme.

    PubMed

    Mikulecky, Peter J; Takach, Jennifer C; Feig, Andrew L

    2004-05-18

    Helical junctions are extremely common motifs in naturally occurring RNAs, but little is known about the thermodynamics that drive their folding. Studies of junction folding face several challenges: non-two-state folding behavior, superposition of secondary and tertiary structural energetics, and drastically opposing enthalpic and entropic contributions to folding. Here we describe a thermodynamic dissection of the folding of the hammerhead ribozyme, a three-way RNA helical junction, by using isothermal titration calorimetry of bimolecular RNA constructs. By using this method, we show that tertiary folding of the hammerhead core occurs with a highly unfavorable enthalpy change, and is therefore entropically driven. Furthermore, the enthalpies and heat capacities of core folding are the same whether supported by monovalent or divalent ions. These properties appear to be general to the core sequence of bimolecular hammerhead constructs. We present a model for the ion-induced folding of the hammerhead core that is similar to those advanced for the folding of much larger RNAs, involving ion-induced collapse to a structured, non-native state accompanied by rearrangement of core residues to produce the native fold. In agreement with previous enzymological and structural studies, our thermodynamic data suggest that the hammerhead structure is stabilized in vitro predominantly by diffusely bound ions. Our approach addresses several significant challenges that accompany the study of junction folding, and should prove useful in defining the thermodynamic determinants of stability in these important RNA motifs. PMID:15134461

  2. Neuronal gap junctions play a role in the secondary neuronal death following controlled cortical impact.

    PubMed

    Belousov, Andrei B; Wang, Yongfu; Song, Ji-Hoon; Denisova, Janna V; Berman, Nancy E; Fontes, Joseph D

    2012-08-22

    In the mammalian CNS, excessive release of glutamate and overactivation of glutamate receptors are responsible for the secondary (delayed) neuronal death following neuronal injury, including ischemia, traumatic brain injury (TBI) and epilepsy. Recent studies in mice showed a critical role for neuronal gap junctions in NMDA receptor-mediated excitotoxicity and ischemia-mediated neuronal death. Here, using controlled cortical impact (CCI) in adult mice, as a model of TBI, and Fluoro-Jade B staining for analysis of neuronal death, we set to determine whether neuronal gap junctions play a role in the CCI-mediated secondary neuronal death. We report that 24h post-CCI, substantial neuronal death is detected in a number of brain regions outside the injury core, including the striatum. The striatal neuronal death is reduced both in wild-type mice by systemic administration of mefloquine (a relatively selective blocker of neuronal gap junctions) and in knockout mice lacking connexin 36 (neuronal gap junction protein). It is also reduced by inactivation of group II metabotropic glutamate receptors (with LY341495) which, as reported previously, control the rapid increase in neuronal gap junction coupling following different types of neuronal injury. The results suggest that neuronal gap junctions play a critical role in the CCI-induced secondary neuronal death. PMID:22781494

  3. Non-hollow-core Cybister trabeculae and compressive properties of two biomimetic models of beetle forewings.

    PubMed

    Tuo, Wanyong; Xie, Juan; Chen, Jinxiang; Guo, Xiaojun

    2016-12-01

    In 2006, the forewing trabeculae of Cybister tripunctatus Olivier (i.e., Cybister) beetles were reported to be hollow, and a biomimetic structural model (i.e., Song's model) was reported to exhibit better compressive mechanical properties than a solid-core trabecula-honeycomb model (i.e., Chen's model). To test these assertions, the current study first observed the trabecular microstructure of the Cybister beetle and confirmed that the trabeculae are solid. Second, the finite element method (FEM) was used to perform a contrast analysis of the compressive mechanical properties of Song's and Chen's biomimetic models. The results indicated that Chen's model exhibited better compressive mechanical properties. These findings, which are completely opposite of Song's findings, were obtained because the comparison models designed for use in Song's study were not comparable to that of Chen's model in terms of the core volumes. This study will benefit the development of beetle forewing biomimetic research. PMID:27612788

  4. Generalized Thermohydraulics Module GENFLO for Combining With the PWR Core Melting Model, BWR Recriticality Neutronics Model and Fuel Performance Model

    SciTech Connect

    Miettinen, Jaakko; Hamalainen, Anitta; Pekkarinen, Esko

    2002-07-01

    Thermal hydraulic simulation capability for accident conditions is needed at present in VTT in several programs. Traditional thermal hydraulic models are too heavy for simulation in the analysis tasks, where the main emphasis is the rapid neutron dynamics or the core melting. The GENFLO thermal hydraulic model has been developed at VTT for special applications in the combined codes. The basic field equations in GENFLO are for the phase mass, the mixture momentum and phase energy conservation equations. The phase separation is solved with the drift flux model. The basic variables to be solved are the pressure, void fraction, mixture velocity, gas enthalpy, liquid enthalpy, and concentration of non-condensable gas fractions. The validation of the thermohydraulic solution alone includes large break LOCA reflooding experiments and in specific for the severe accident conditions QUENCH tests. In the recriticality analysis the core neutronics is simulated with a two-dimensional transient neutronics code TWODIM. The recriticality with one rapid prompt peak is expected during a severe accident scenario, where the control rods have been melted and ECCS reflooding is started after the depressurization. The GENFLO module simulates the BWR thermohydraulics in this application. The core melting module has been developed for the real time operator training by using the APROS engineering simulators. The core heatup, oxidation, metal and fuel pellet relocation and corium pool formation into the lower plenum are calculated. In this application the GENFLO model simulates the PWR vessel thermohydraulics. In the fuel performance analysis the fuel rod transient behavior is simulated with the FRAPTRAN code. GENFLO simulates the subchannel around a single fuel rod and delivers the heat transfer on the cladding surface for the FRAPTRAN. The transient boundary conditions for the subchannel are transmitted from the system code for operational transient, loss of coolant accidents and

  5. The modeling of core melting and in-vessel corium relocation in the APRIL code

    SciTech Connect

    Kim. S.W.; Podowski, M.Z.; Lahey, R.T.

    1995-09-01

    This paper is concerned with the modeling of severe accident phenomena in boiling water reactors (BWR). New models of core melting and in-vessel corium debris relocation are presented, developed for implementation in the APRIL computer code. The results of model testing and validations are given, including comparisons against available experimental data and parametric/sensitivity studies. Also, the application of these models, as parts of the APRIL code, is presented to simulate accident progression in a typical BWR reactor.

  6. Towards 12% stabilised efficiency in single junction polymorphous silicon solar cells: experimental developments and model predictions

    NASA Astrophysics Data System (ADS)

    Abolmasov, Sergey; Cabarrocas, Pere Roca i.; Chatterjee, Parsathi

    2016-01-01

    We have combined recent experimental developments in our laboratory with modelling to devise ways of maximising the stabilised efficiency of hydrogenated amorphous silicon (a-Si:H) PIN solar cells. The cells were fabricated using the conventional plasma enhanced chemical vapour deposition (PECVD) technique at various temperatures, pressures and gas flow ratios. A detailed electrical-optical simulator was used to examine the effect of using wide band gap P-and N-doped μc-SiOx:H layers, as well as a MgF2 anti-reflection coating (ARC) on cell performance. We find that with the best quality a-Si:H so far produced in our laboratory and optimised deposition parameters for the corresponding solar cell, we could not attain a 10% stabilised efficiency due to the high stabilised defect density of a-Si:H, although this landmark has been achieved in some laboratories. On the other hand, a close cousin of a-Si:H, hydrogenated polymorphous silicon (pm-Si:H), a nano-structured silicon thin film produced by PECVD under conditions close to powder formation, has been developed in our laboratory. This material has been shown to have a lower initial and stabilised defect density as well as higher hole mobility than a-Si:H. Modelling indicates that it is possible to attain stabilised efficiencies of 12% when pm-Si:H is incorporated in a solar cell, deposited in a NIP configuration to reduce the P/I interface defects and combined with P- and N-doped μc-SiOx:H layers and a MgF2 ARC.

  7. Muscle spindles exhibit core lesions and extensive degeneration of intrafusal fibers in the Ryr1{sup I4895T/wt} mouse model of core myopathy

    SciTech Connect

    Zvaritch, Elena; MacLennan, David H.

    2015-04-24

    Muscle spindles from the hind limb muscles of adult Ryr1{sup I4895T/wt} (IT/+) mice exhibit severe structural abnormalities. Up to 85% of the spindles are separated from skeletal muscle fascicles by a thick layer of connective tissue. Many intrafusal fibers exhibit degeneration, with Z-line streaming, compaction and collapse of myofibrillar bundles, mitochondrial clumping, nuclear shrinkage and pyknosis. The lesions resemble cores observed in the extrafusal myofibers of this animal model and of core myopathy patients. Spindle abnormalities precede those in extrafusal fibers, indicating that they are a primary pathological feature in this murine Ryr1-related core myopathy. Muscle spindle involvement, if confirmed for human core myopathy patients, would provide an explanation for an array of devastating clinical features characteristic of these diseases and provide novel insights into the pathology of RYR1-related myopathies. - Highlights: • Muscle spindles exhibit structural abnormalities in a mouse model of core myopathy. • Myofibrillar collapse and mitochondrial clumping is observed in intrafusal fibers. • Myofibrillar degeneration follows a pattern similar to core formation in extrafusal myofibers. • Muscle spindle abnormalities are a part of the pathological phenotype in the mouse model of core myopathy. • Direct involvement of muscle spindles in the pathology of human RYR1-related myopathies is proposed.

  8. Modeling of melt retention in EU-APR1400 ex-vessel core catcher

    SciTech Connect

    Granovsky, V. S.; Sulatsky, A. A.; Khabensky, V. B.; Sulatskaya, M. B.; Gusarov, V. V.; Almyashev, V. I.; Komlev, A. A.; Bechta, S.; Kim, Y. S.; Park, R. J.; Kim, H. Y.; Song, J. H.

    2012-07-01

    A core catcher is adopted in the EU-APR1400 reactor design for management and mitigation of severe accidents with reactor core melting. The core catcher concept incorporates a number of engineering solutions used in the catcher designs of European EPR and Russian WER-1000 reactors, such as thin-layer corium spreading for better cooling, retention of the melt in a water-cooled steel vessel, and use of sacrificial material (SM) to control the melt properties. SM is one of the key elements of the catcher design and its performance is critical for melt retention efficiency. This SM consists of oxide components, but the core catcher also includes sacrificial steel which reacts with the metal melt of the molten corium to reduce its temperature. The paper describes the required properties of SM. The melt retention capability of the core catcher can be confirmed by modeling the heat fluxes to the catcher vessel to show that it will not fail. The fulfillment of this requirement is demonstrated on the example of LBLOCA severe accident. Thermal and physicochemical interactions between the oxide and metal melts, interactions of the melts with SM, sacrificial steel and vessel, core catcher external cooling by water and release of non-condensable gases are modeled. (authors)

  9. Gap Junctions as Common Cause of High-Frequency Oscillations and Epileptic Seizures in a Computational Cascade of Neuronal Mass and Compartmental Modeling.

    PubMed

    Helling, Robert M; Koppert, Marc M J; Visser, Gerhard H; Kalitzin, Stiliyan N

    2015-09-01

    High frequency oscillations (HFO) appear to be a promising marker for delineating the seizure onset zone (SOZ) in patients with localization related epilepsy. It remains, however, a purely observational phenomenon and no common mechanism has been proposed to relate HFOs and seizure generation. In this work we show that a cascade of two computational models, one on detailed compartmental scale and a second one on neural mass scale can explain both the autonomous generation of HFOs and the presence of epileptic seizures as emergent properties. To this end we introduce axonal-axonal gap junctions on a microscopic level and explore their impact on the higher level neural mass model (NMM). We show that the addition of gap junctions can generate HFOs and simultaneously shift the operational point of the NMM from a steady state network into bistable behavior that can autonomously generate epileptic seizures. The epileptic properties of the system, or the probability to generate epileptic type of activity, increases gradually with the increase of the density of axonal-axonal gap junctions. We further demonstrate that ad hoc HFO detectors used in previous studies are applicable to our simulated data. PMID:26058401

  10. An analytical model of a ferrite-cored inductor used as an eddy current probe

    NASA Astrophysics Data System (ADS)

    Lu, Yi; Bowler, John R.; Theodoulidis, Theodoros P.

    2012-05-01

    An analytical model of an axisymmetric eddy current ferrite-cored probe above a multi-layered conducting half-space has been developed using a procedure in which the domain of the problem is truncated radially. This means that solutions can be expressed in the form of generalized Fourier-Bessel series. The expansion coefficients are found by matching the field across the interfaces between the subregions of the problem. Initially, the magnetic vector potential of a simple circular current filament is expanded in a series form. The solution is then modified to accommodate an infinitely long coaxial ferrite core, and the principle of superposition is invoked to derive a coil field from the filament field in the presence of the core. Next, we consider a semi-infinite core and then one of finite length. Finally, the effects of a multi-layered conductor are included. Numerical predictions of probe impedance have been compared with experimental data showing excellent agreement.

  11. Ex-Vessel Core Melt Modeling Comparison between MELTSPREAD-CORQUENCH and MELCOR 2.1

    SciTech Connect

    Robb, Kevin R.; Farmer, Mitchell; Francis, Matthew W.

    2014-03-01

    System-level code analyses by both United States and international researchers predict major core melting, bottom head failure, and corium-concrete interaction for Fukushima Daiichi Unit 1 (1F1). Although system codes such as MELCOR and MAAP are capable of capturing a wide range of accident phenomena, they currently do not contain detailed models for evaluating some ex-vessel core melt behavior. However, specialized codes containing more detailed modeling are available for melt spreading such as MELTSPREAD as well as long-term molten corium-concrete interaction (MCCI) and debris coolability such as CORQUENCH. In a preceding study, Enhanced Ex-Vessel Analysis for Fukushima Daiichi Unit 1: Melt Spreading and Core-Concrete Interaction Analyses with MELTSPREAD and CORQUENCH, the MELTSPREAD-CORQUENCH codes predicted the 1F1 core melt readily cooled in contrast to predictions by MELCOR. The user community has taken notice and is in the process of updating their systems codes; specifically MAAP and MELCOR, to improve and reduce conservatism in their ex-vessel core melt models. This report investigates why the MELCOR v2.1 code, compared to the MELTSPREAD and CORQUENCH 3.03 codes, yield differing predictions of ex-vessel melt progression. To accomplish this, the differences in the treatment of the ex-vessel melt with respect to melt spreading and long-term coolability are examined. The differences in modeling approaches are summarized, and a comparison of example code predictions is provided.

  12. Dok-7 promotes slow muscle integrity as well as neuromuscular junction formation in a zebrafish model of congenital myasthenic syndromes.

    PubMed

    Müller, Juliane S; Jepson, Catherine D; Laval, Steven H; Bushby, Kate; Straub, Volker; Lochmüller, Hanns

    2010-05-01

    The small signalling adaptor protein Dok-7 has recently been reported as an essential protein of the neuromuscular junction (NMJ). Mutations resulting in partial loss of Dok-7 activity cause a distinct limb-girdle subtype of the inherited NMJ disorder congenital myasthenic syndromes (CMSs), whereas complete loss of Dok-7 results in a lethal phenotype in both mice and humans. Here we describe the zebrafish orthologue of Dok-7 and study its in vivo function. Dok-7 deficiency leads to motility defects in zebrafish embryos and larvae. The relative importance of Dok-7 at different stages of NMJ development varies; it is crucial for the earliest step, the formation of acetylcholine receptor (AChR) clusters in the middle of the muscle fibre prior to motor neuron contact. At later stages, presence of Dok-7 is not absolutely essential, as focal and non-focal synapses do form when Dok-7 expression is downregulated. These contacts however are smaller than in the wild-type zebrafish, reminiscent of the neuromuscular endplate pathology seen in patients with DOK7 mutations. Intriguingly, we also observed changes in slow muscle fibre arrangement; previously, Dok-7 has not been linked to functions other than postsynaptic AChR clustering. Our results suggest an additional role of Dok-7 in muscle. This role seems to be independent of the muscle-specific tyrosine kinase MuSK, the known binding partner of Dok-7 at the NMJ. Our findings in the zebrafish model contribute to a better understanding of the signalling pathways at the NMJ and the pathomechanisms of DOK7 CMSs. PMID:20147321

  13. Interfacing Cultured Neurons to Microtransducers Arrays: A Review of the Neuro-Electronic Junction Models

    PubMed Central

    Massobrio, Paolo; Massobrio, Giuseppe; Martinoia, Sergio

    2016-01-01

    Microtransducer arrays, both metal microelectrodes and silicon-based devices, are widely used as neural interfaces to measure, extracellularly, the electrophysiological activity of excitable cells. Starting from the pioneering works at the beginning of the 70's, improvements in manufacture methods, materials, and geometrical shape have been made. Nowadays, these devices are routinely used in different experimental conditions (both in vivo and in vitro), and for several applications ranging from basic research in neuroscience to more biomedical oriented applications. However, the use of these micro-devices deeply depends on the nature of the interface (coupling) between the cell membrane and the sensitive active surface of the microtransducer. Thus, many efforts have been oriented to improve coupling conditions. Particularly, in the latest years, two innovations related to the use of carbon nanotubes as interface material and to the development of micro-structures which can be engulfed by the cell membrane have been proposed. In this work, we review what can be simulated by using simple circuital models and what happens at the interface between the sensitive active surface of the microtransducer and the neuronal membrane of in vitro neurons. We finally focus our attention on these two novel technological solutions capable to improve the coupling between neuron and micro-nano transducer. PMID:27445657

  14. Interfacing Cultured Neurons to Microtransducers Arrays: A Review of the Neuro-Electronic Junction Models.

    PubMed

    Massobrio, Paolo; Massobrio, Giuseppe; Martinoia, Sergio

    2016-01-01

    Microtransducer arrays, both metal microelectrodes and silicon-based devices, are widely used as neural interfaces to measure, extracellularly, the electrophysiological activity of excitable cells. Starting from the pioneering works at the beginning of the 70's, improvements in manufacture methods, materials, and geometrical shape have been made. Nowadays, these devices are routinely used in different experimental conditions (both in vivo and in vitro), and for several applications ranging from basic research in neuroscience to more biomedical oriented applications. However, the use of these micro-devices deeply depends on the nature of the interface (coupling) between the cell membrane and the sensitive active surface of the microtransducer. Thus, many efforts have been oriented to improve coupling conditions. Particularly, in the latest years, two innovations related to the use of carbon nanotubes as interface material and to the development of micro-structures which can be engulfed by the cell membrane have been proposed. In this work, we review what can be simulated by using simple circuital models and what happens at the interface between the sensitive active surface of the microtransducer and the neuronal membrane of in vitro neurons. We finally focus our attention on these two novel technological solutions capable to improve the coupling between neuron and micro-nano transducer. PMID:27445657

  15. Self-Propelled Dressings Containing Thrombin and Tranexamic Acid Improve Short-Term Survival in a Swine Model of Lethal Junctional Hemorrhage.

    PubMed

    Baylis, James R; St John, Alexander E; Wang, Xu; Lim, Esther B; Statz, Matthew L; Chien, Diana; Simonson, Eric; Stern, Susan A; Liggins, Richard T; White, Nathan J; Kastrup, Christian J

    2016-09-01

    Hemorrhage is the leading cause of preventable death in trauma, and hemorrhage from noncompressible junctional anatomic sites is particularly difficult to control. The current standard is QuikClot Combat Gauze packing, which requires 3 min of compression. We have created a novel dressing with calcium carbonate microparticles that can disperse and self-propel upstream against flowing blood. We loaded these microparticles with thrombin and tranexamic acid and tested their efficacy in a swine arterial bleeding model without wound compression. Anesthetized immature female swine received 5 mm femoral arteriotomies to induce severe junctional hemorrhage. Wounds were packed with kaolin-based QuikClot Combat Gauze (KG), propelled thrombin-microparticles with protonated tranexamic acid (PTG), or a non-propelling formulation of the same thrombin-microparticles with non-protonated tranexamic acid (NPTG). Wounds were not compressed after packing. Each animal then received one 15 mL/kg bolus of hydroxyethyl starch solution followed by Lactated Ringer as needed for hypotension (maximum: 100 mL/kg) for up to 3 h. Survival was improved with PTG (3-h survival: 8/8, 100%) compared with KG (3/8, 37.5%) and NPTG (2/8, 25%) (P <0.01). PTG animals maintained lower serum lactate and higher hemoglobin concentrations than NPTG (P <0.05) suggesting PTG decreased severity of subsequent hemorrhagic shock. However, total blood loss, Lactated Ringer infusion volumes, and mean arterial pressures of surviving animals were not different between groups (P >0.05). Thus, in this swine model of junctional arterial hemorrhage, gauze with self-propelled, prothrombotic microparticles improved survival and 2 indicators of hemorrhagic shock when applied without compression, suggesting this capability may enable better treatment of non-compressible junctional wounds. PMID:27206277

  16. Prestellar core modeling in the presence of a filament. The dense heart of L1689B

    NASA Astrophysics Data System (ADS)

    Steinacker, J.; Bacmann, A.; Henning, Th.; Heigl, S.

    2016-08-01

    Context. Lacking a paradigm for the onset of star formation, it is important to derive basic physical properties of prestellar cores and filaments like density and temperature structures. Aims: We aim to disentangle the spatial variation in density and temperature across the prestellar core L1689B, which is embedded in a filament. We want to determine the range of possible central densities and temperatures that are consistent with the continuum radiation data. Methods: We apply a new synergetic radiative transfer method: the derived 1D density profiles are both consistent with a cut through the Herschel PACS/SPIRE and JCMT SCUBA-2 continuum maps of L1689B and with a derived local interstellar radiation field. Choosing an appropriate cut along the filament major axis, we minimize the impact of the filament emission on the modeling. Results: For the bulk of the core (5000-20 000 au) an isothermal sphere model with a temperature of around 10 K provides the best fits. We show that the power law index of the density profile, as well as the constant temperature can be derived directly from the radial surface brightness profiles. For the inner region (<5000 au), we find a range of densities and temperatures that are consistent with the surface brightness profiles and the local interstellar radiation field. Based on our core models, we find that pixel-by-pixel single temperature spectral energy distribution fits are incapable of determining dense core properties. Conclusions: We conclude that, to derive physical core properties, it is important to avoid azimuthally-averaging core and filament. Correspondingly, derived core masses are too high since they include some mass of the filament, and might introduce errors when determining core mass functions. The forward radiative transfer methods also avoids the loss of information owing to smearing of all maps to the coarsest spatial resolution. We find the central core region to be colder and denser than estimated in recent

  17. Endophenotype Network Models: Common Core of Complex Diseases

    PubMed Central

    Ghiassian, Susan Dina; Menche, Jörg; Chasman, Daniel I.; Giulianini, Franco; Wang, Ruisheng; Ricchiuto, Piero; Aikawa, Masanori; Iwata, Hiroshi; Müller, Christian; Zeller, Tania; Sharma, Amitabh; Wild, Philipp; Lackner, Karl; Singh, Sasha; Ridker, Paul M.; Blankenberg, Stefan; Barabási, Albert-László; Loscalzo, Joseph

    2016-01-01

    Historically, human diseases have been differentiated and categorized based on the organ system in which they primarily manifest. Recently, an alternative view is emerging that emphasizes that different diseases often have common underlying mechanisms and shared intermediate pathophenotypes, or endo(pheno)types. Within this framework, a specific disease’s expression is a consequence of the interplay between the relevant endophenotypes and their local, organ-based environment. Important examples of such endophenotypes are inflammation, fibrosis, and thrombosis and their essential roles in many developing diseases. In this study, we construct endophenotype network models and explore their relation to different diseases in general and to cardiovascular diseases in particular. We identify the local neighborhoods (module) within the interconnected map of molecular components, i.e., the subnetworks of the human interactome that represent the inflammasome, thrombosome, and fibrosome. We find that these neighborhoods are highly overlapping and significantly enriched with disease-associated genes. In particular they are also enriched with differentially expressed genes linked to cardiovascular disease (risk). Finally, using proteomic data, we explore how macrophage activation contributes to our understanding of inflammatory processes and responses. The results of our analysis show that inflammatory responses initiate from within the cross-talk of the three identified endophenotypic modules. PMID:27278246

  18. Endophenotype Network Models: Common Core of Complex Diseases.

    PubMed

    Ghiassian, Susan Dina; Menche, Jörg; Chasman, Daniel I; Giulianini, Franco; Wang, Ruisheng; Ricchiuto, Piero; Aikawa, Masanori; Iwata, Hiroshi; Müller, Christian; Zeller, Tania; Sharma, Amitabh; Wild, Philipp; Lackner, Karl; Singh, Sasha; Ridker, Paul M; Blankenberg, Stefan; Barabási, Albert-László; Loscalzo, Joseph

    2016-01-01

    Historically, human diseases have been differentiated and categorized based on the organ system in which they primarily manifest. Recently, an alternative view is emerging that emphasizes that different diseases often have common underlying mechanisms and shared intermediate pathophenotypes, or endo(pheno)types. Within this framework, a specific disease's expression is a consequence of the interplay between the relevant endophenotypes and their local, organ-based environment. Important examples of such endophenotypes are inflammation, fibrosis, and thrombosis and their essential roles in many developing diseases. In this study, we construct endophenotype network models and explore their relation to different diseases in general and to cardiovascular diseases in particular. We identify the local neighborhoods (module) within the interconnected map of molecular components, i.e., the subnetworks of the human interactome that represent the inflammasome, thrombosome, and fibrosome. We find that these neighborhoods are highly overlapping and significantly enriched with disease-associated genes. In particular they are also enriched with differentially expressed genes linked to cardiovascular disease (risk). Finally, using proteomic data, we explore how macrophage activation contributes to our understanding of inflammatory processes and responses. The results of our analysis show that inflammatory responses initiate from within the cross-talk of the three identified endophenotypic modules. PMID:27278246

  19. On the joint inversion of geophysical data for models of the coupled core-mantle system

    NASA Technical Reports Server (NTRS)

    Voorhies, Coerte V.

    1991-01-01

    Joint inversion of magnetic, earth rotation, geoid, and seismic data for a unified model of the coupled core-mantle system is proposed and shown to be possible. A sample objective function is offered and simplified by targeting results from independent inversions and summary travel time residuals instead of original observations. These data are parameterized in terms of a very simple, closed model of the topographically coupled core-mantle system. Minimization of the simplified objective function leads to a nonlinear inverse problem; an iterative method for solution is presented. Parameterization and method are emphasized; numerical results are not presented.

  20. Steady flows at the top of the core from geomagnetic field models - The steady motions theorem

    NASA Technical Reports Server (NTRS)

    Voorhies, C. V.; Backus, G. E.

    1985-01-01

    It is demonstrated that the steady tangential velocity at the closed surface of a perfect-fluid conductor bounded by a rigid impenetrable exterior can be uniquely determined from knowledge of the normal component of the time-varying magnetic-flux density on the surface. In the context of a simple earth model consisting of an electrically insulating mantle surrounding a perfectly conducting core, the assumption of steady flow provides enough extra information to eliminate the toroidal ambiguity and to allow derivation of a unique global flow at the top of the core from a model of the geomagnetic field.

  1. A Self-consistent Model of the Growth of Jupiter's Core

    NASA Astrophysics Data System (ADS)

    Hubickyj, O.; Weidenschilling, S.; Lissauer, J. J.; D'Angelo, G.; Bodenheimer, P.

    2011-12-01

    We report preliminary results of self-consistent calculations of the assembly of Jupiter's solid core by accretional collisions of planetesimals in the early Solar System. These calculations are performed by using a code that models the accreting solids and a planet formation code to model the core's envelope structure. The planetesimal accretion code simulates the growth of a seed body embedded in a swarm of planetesimals with sizes ranging from ~10 m to ~100 km. The code employs multiple zones at semi-major axes in the swarm and computes the collision rate for each zone as the swarm evolves and the seed body grows, becoming the protoplanetary core. Gravitational stirring due to the mutual interactions of the bodies in the swarm is included, although stirring by the core is usually dominant. Collisions among planetesimals, migration and velocity damping due to the drag of nebular gas are also included. The planet formation code simulates the thermodynamical structure and growth of the core's envelope. The code computes the trajectory and evolution of accreted planetesimals as they travel through the envelope and deposit mass and energy. The effective cross-section for planetesimal capture, as a function of the planetesimal size, is calculated and used in the planetesimal accretion code so that gas drag effects in the core's envelope are properly taken into account. The calculation of the opacity at each depth accounts for sedimentation and coagulation of dust and small grains which are released in the envelope by ablating planetesimals. Previous results imply that, if mutual collisions among planetesimals and gas drag are ignored, the isolation mass of the core is set by the restricted 3-body problem. For a surface density of 10 g/cm2 at Jupiter's orbital distance, the isolation mass is about 10 Earth masses and this typically is typically reached within 1 Myr. However, inclusion of collisional damping reduces eccentricities in the swarm, causing mass to pile up

  2. VERA-CS Modeling and Simulation of PWR Main Steam Line Break Core Response to DNB

    SciTech Connect

    Salko, Robert K; Sung, Yixing; Kucukboyaci, Vefa; Xu, Yiban; Cao, Liping

    2016-01-01

    The Virtual Environment for Reactor Applications core simulator (VERA-CS) being developed by the Consortium for the Advanced Simulation of Light Water Reactors (CASL) includes coupled neutronics, thermal-hydraulics, and fuel temperature components with an isotopic depletion capability. The neutronics capability employed is based on MPACT, a three-dimensional (3-D) whole core transport code. The thermal-hydraulics and fuel temperature models are provided by the COBRA-TF (CTF) subchannel code. As part of the CASL development program, the VERA-CS (MPACT/CTF) code system was applied to model and simulate reactor core response with respect to departure from nucleate boiling ratio (DNBR) at the limiting time step of a postulated pressurized water reactor (PWR) main steamline break (MSLB) event initiated at the hot zero power (HZP), either with offsite power available and the reactor coolant pumps in operation (high-flow case) or without offsite power where the reactor core is cooled through natural circulation (low-flow case). The VERA-CS simulation was based on core boundary conditions from the RETRAN-02 system transient calculations and STAR-CCM+ computational fluid dynamics (CFD) core inlet distribution calculations. The evaluation indicated that the VERA-CS code system is capable of modeling and simulating quasi-steady state reactor core response under the steamline break (SLB) accident condition, the results are insensitive to uncertainties in the inlet flow distributions from the CFD simulations, and the high-flow case is more DNB limiting than the low-flow case.

  3. Validation of PARET for the modeling of heat transfer under natural convection core cooling

    SciTech Connect

    Ibrahim, J.K.; Kassim, M.S.; Mohammed, F.

    1995-12-31

    The PARET code is a one-dimensional, coupled thermal-hydraulic and point-kinetics code, which was originally developed for the analysis of SPERT-I transients and later adapted for the analysis of transient behavior in research reactors. Due to its ease of transportability and relative simplicity of input preparation, it is widely used internationally and is particularly attractive for research reactors with limited computational facilities. The thermal-hydraulic modeling of the current version of PARET accounts for buoyancy forces in the core and external pressure gradients that may arise from density differences between the core inlet and outlet. This feature of PARET makes it a useful tool for the analysis of research reactors cooled by natural convection as well as those cooled by forced convection. Since PARET has been applied to the analysis of the International Atomic Energy Agency 10-MW benchmark cores for protected and unprotected transients and also for the analysis of SPERT-I transients, its forced convection heat-removal model is reliable. However, there has been little experience with the capability of PARET to model heat removal in cores cooled by natural convection. This paper reports the results of some experiments performed at the Malaysian PUSPATI reactor to compare PARET predictions for power increases under natural convection core cooling to measured data.

  4. Investigation of approximations in thermal-hydraulic modeling of core conversions

    SciTech Connect

    Garner, Patrick L.; Hanan, Nelson A.

    2008-07-15

    Neutronics analyses for core conversions are usually fairly detailed, for example representing all 4 flats and all 4 corners of all 6 tubes of all 20 IRT-3M or -4M fuel assemblies in the core of the VVR-SM reactor in Uzbekistan. The coupled neutronics and thermal-hydraulic analysis for safety analysis transients is usually less detailed, for example modeling only a hot and an average fuel plate and the associated coolant. Several of the approximations have been studied using the RELAP5 and PARET computer codes in order to provide assurance that the lack of full detail is not important to the safety analysis. Two specific cases studied are (1) representation of a core of same- type fuel assemblies by a hot and an average assembly each having multiple channels as well as by merely a hot and average channel and (2) modeling a core containing multiple fuel types as the sum of fractional core models for each fuel type. (author)

  5. Detailed OEDGE modeling of core-pedestal fueling in DIII-D

    SciTech Connect

    Elder, J. D.; Leonard, A. W.; Stangeby, P. C.; Boedo, J.A.; Bray, B. D.; Brooks, N. H.; Fenstermacher, M. E.; Reiter, D.; Unterberg, Ezekial A; Watkins, J. G.; Lisgo, S.

    2013-01-01

    The OEDGE code is used to model core fueling for attached L-mode plasmas and between edge localized modes (ELMs) for attached H-mode plasmas in DIII-D. Empirical plasma reconstruction has been used to determine the plasma conditions in these discharges. EIRENE is used to model the hydrogen recycling. Divertor recycling accounts for 65 100% of the core fueling. The fraction of the total divertor target flux ionized inside the separatrix ranges from 5% to 20%. The fraction of total wall flux ionized inside the separatrix ranges from 20% to 50%. Neutrals originating from wall regions closer to the separatrix are more likely to ionize in the confined plasma. Ionization in the confined plasma is concentrated below the midplane with peaks in the poloidal profiles just above the X-point. Radial core ionization in high density H-mode is peaked strongly near the separatrix.

  6. A Model for Enhancing Internet Medical Document Retrieval with “Medical Core Metadata”

    PubMed Central

    Malet, Gary; Munoz, Felix; Appleyard, Richard; Hersh, William

    1999-01-01

    Objective: Finding documents on the World Wide Web relevant to a specific medical information need can be difficult. The goal of this work is to define a set of document content description tags, or metadata encodings, that can be used to promote disciplined search access to Internet medical documents. Design: The authors based their approach on a proposed metadata standard, the Dublin Core Metadata Element Set, which has recently been submitted to the Internet Engineering Task Force. Their model also incorporates the National Library of Medicine's Medical Subject Headings (MeSH) vocabulary and Medline-type content descriptions. Results: The model defines a medical core metadata set that can be used to describe the metadata for a wide variety of Internet documents. Conclusions: The authors propose that their medical core metadata set be used to assign metadata to medical documents to facilitate document retrieval by Internet search engines. PMID:10094069

  7. Final Report, NERI Project: ''An Innovative Reactor Analysis Methodology Based on a Quasidiffusion Nodal Core Model''

    SciTech Connect

    Dmitriy Y. Anistratov; Marvin L. Adams; Todd S. Palmer; Kord S. Smith; Kevin Clarno; Hikaru Hiruta; Razvan Nes

    2003-08-04

    OAK (B204) Final Report, NERI Project: ''An Innovative Reactor Analysis Methodology Based on a Quasidiffusion Nodal Core Model'' The present generation of reactor analysis methods uses few-group nodal diffusion approximations to calculate full-core eigenvalues and power distributions. The cross sections, diffusion coefficients, and discontinuity factors (collectively called ''group constants'') in the nodal diffusion equations are parameterized as functions of many variables, ranging from the obvious (temperature, boron concentration, etc.) to the more obscure (spectral index, moderator temperature history, etc.). These group constants, and their variations as functions of the many variables, are calculated by assembly-level transport codes. The current methodology has two main weaknesses that this project addressed. The first weakness is the diffusion approximation in the full-core calculation; this can be significantly inaccurate at interfaces between different assemblies. This project used the nodal diffusion framework to implement nodal quasidiffusion equations, which can capture transport effects to an arbitrary degree of accuracy. The second weakness is in the parameterization of the group constants; current models do not always perform well, especially at interfaces between unlike assemblies. The project developed a theoretical foundation for parameterization and homogenization models and used that theory to devise improved models. The new models were extended to tabulate information that the nodal quasidiffusion equations can use to capture transport effects in full-core calculations.

  8. A dissolution model that accounts for coverage of mineral surfaces by precipitation in core floods

    NASA Astrophysics Data System (ADS)

    Pedersen, Janne; Jettestuen, Espen; Madland, Merete V.; Hildebrand-Habel, Tania; Korsnes, Reidar I.; Vinningland, Jan Ludvig; Hiorth, Aksel

    2016-01-01

    In this paper, we propose a model for evolution of reactive surface area of minerals due to surface coverage by precipitating minerals. The model is used to interpret results from an experiment where a chalk core was flooded with MgCl2 for 1072 days, giving rise to calcite dissolution and magnesite precipitation. The model successfully describes both the long-term behavior of the measured effluent concentrations and the more or less homogeneous distribution of magnesite found in the core after 1072 days. The model also predicts that precipitating magnesite minerals form as larger crystals or aggregates of smaller size crystals, and not as thin flakes or as a monomolecular layer. Using rate constants obtained from literature gave numerical effluent concentrations that diverged from observed values only after a few days of flooding. To match the simulations to the experimental data after approximately 1 year of flooding, a rate constant that is four orders of magnitude lower than reported by powder experiments had to be used. We argue that a static rate constant is not sufficient to describe a chalk core flooding experiment lasting for nearly 3 years. The model is a necessary extension of standard rate equations in order to describe long term core flooding experiments where there is a large degree of textural alteration.

  9. Experimental study and two-dimensional modeling of avalanche breakdown voltage in polycrystalline silicon p-n junctions

    NASA Astrophysics Data System (ADS)

    Amrani, Mohammed; Benamara, Zineb; Chellali, Mohammed; Tizi, Schahrazade; Mohammed-Brahim, Tayeb

    2007-05-01

    A two-dimensional (2D) model of the avalanche breakdown mechanism is examined to achieve a lateral polycrystalline silicon (polysilicon) p+-n diode with high forward current and high breakdown voltage (BV). Samples with different film thicknesses (tf) were deposited by low-pressure chemical vapor deposition process. The p+ zone and n zone are doped by ionic implantation with boron and phosphorus, respectively. The measured current-voltage (I-V) characteristics show that BV varies between 6.4, 7.5, and 8.25V when tf varies between 250, 350, and 450nm, respectively. These data also show that when tf decreases, the forward current is high, the leakage current becomes higher under reverse bias, and BV decreases. We reveal that the breakdown phenomenon of our samples is dominated by the impact ionization effect. A 2D simulation of avalanche breakdown voltage versus the critical parameters of polysilicon diodes is implemented. The algorithm is based on the solution of Poisson's equation and calculating the ionization integral along various electric field lines computed from the potential distribution. By taking into account the localization of trap states in the grain boundaries, the effects on the breakdown voltage of the doping concentration ND, the intergranular trap state density NT, the grain sizes Lg, the disposition of the grain boundaries, and the film thickness tf are investigated. The simulation results show that the impact ionization mechanism is more accelerated in polysilicon than in single-crystalline silicon, and the BV(Lg), BV(ND), BV(NT), and BV(tf) curves are characterized by a succession of descending stair shapes due to the trapping of free carries by trap states contained in grain boundaries that are parallel to the metallurgic junction. By comparing simulation results with experimental data, we select the electron-hole ionization coefficients characterizing our samples: αn∞=1.0×106cm-1, Encrit=5.87×106Vcm-1, αp∞=1.582×106cm-1, and EPcrit=2

  10. RADIATION TRANSFER OF MODELS OF MASSIVE STAR FORMATION. I. DEPENDENCE ON BASIC CORE PROPERTIES

    SciTech Connect

    Zhang Yichen; Tan, Jonathan C. E-mail: jt@astro.ufl.edu

    2011-05-20

    Radiative transfer calculations of massive star formation are presented. These are based on the Turbulent Core Model of McKee and Tan and self-consistently included a hydrostatic core, an inside-out expansion wave, a zone of free-falling rotating collapse, wide-angle dust-free outflow cavities, an active accretion disk, and a massive protostar. For the first time for such models, an optically thick inner gas disk extends inside the dust destruction front. This is important to conserve the accretion energy naturally and for its shielding effect on the outer region of the disk and envelope. The simulation of radiation transfer is performed with the Monte Carlo code of Whitney, yielding spectral energy distributions (SEDs) for the model series, from the simplest spherical model to the fiducial one, with the above components each added step by step. Images are also presented in different wavebands of various telescope cameras, including Spitzer IRAC and MIPS, SOFIA FORCAST, and Herschel PACS and SPIRE. The existence of the optically thick inner disk produces higher optical wavelength fluxes but reduces near- and mid-IR emission. The presence of outflow cavities, the inclination angle to the line of sight, and the thickness of the disk all affect the SEDs and images significantly. For the high-mass surface density cores considered here, the mid-IR emission can be dominated by the outflow cavity walls, as has been suggested by De Buizer. The effect of varying the pressure of the environment bounding the surface of the massive core is also studied. With lower surface pressures, the core is larger, has lower extinction and accretion rates, and the observed mid-IR flux from the disk can then be relatively high even though the accretion luminosity is lower. In this case the silicate absorption feature becomes prominent, in contrast to higher density cores forming under higher pressures.

  11. Automatic Extraction of IndoorGML Core Model from OpenStreetMap

    NASA Astrophysics Data System (ADS)

    Mirvahabi, S. S.; Abbaspour, R. A.

    2015-12-01

    Navigation has become an essential component of human life and a necessary component in many fields. Because of the increasing size and complexity of buildings, a unified data model for navigation analysis and exchange of information. IndoorGML describes an appropriate data model and XML schema of indoor spatial information that focuses on modelling indoor spaces. Collecting spatial data by professional and commercial providers often need to spend high cost and time, which is the major reason that VGI emerged. One of the most popular VGI projects is OpenStreetMap (OSM). In this paper, a new approach is proposed for the automatic generation of IndoorGML data core file from OSM data file. The output of this approach is the file of core data model that can be used alongside the navigation data model for navigation application of indoor space.

  12. Models of molecular cloud cores. II. Multitransition study of CS-34

    SciTech Connect

    Mundy, L.G.; Evans, N.J.,II; Snell, R.L.; Goldsmith, P.F.; Bally, J.

    1986-07-01

    The dense cores embedded in the M17, S140 and NGC 2024 molecular clouds are mapped in the J = 5-4, J = 3-2, and J = 2-1 transitions of CS-34, and these lines are found to be a factor of 3-4 weaker, and 25 percent narrower, than the CS lines mapped in these cores by Snell et al. (1984). The data are well fitted by spherical LGV models for the excitation, and the excellent correlation between the CS-34 and CS column densities corroborates the absence of a systematic increase in the gas density with decreasing core radius found by Snell et al. Though the CS/CS-34 column density ratio is 9-17, rather than the terrestrial value of 22.5, the column density relationship is linear. The data support of a clump model in which the column density distribution in the core is determined by the volume filling factor of clumps with high, fairly uniform gas density, and it is suggested that the dense gas in the data represents the dominant component of the core gas. 22 references.

  13. Effect of superconducting solenoid model cores on spanwise iron magnet roll control

    NASA Technical Reports Server (NTRS)

    Britcher, C. P.

    1985-01-01

    Compared with conventional ferromagnetic fuselage cores, superconducting solenoid cores appear to offer significant reductions in the projected cost of a large wind tunnel magnetic suspension and balance system. The provision of sufficient magnetic roll torque capability has been a long-standing problem with all magnetic suspension and balance systems; and the spanwise iron magnet scheme appears to be the most powerful system available. This scheme utilizes iron cores which are installed in the wings of the model. It was anticipated that the magnetization of these cores, and hence the roll torque generated, would be affected by the powerful external magnetic field of the superconducting solenoid. A preliminary study has been made of the effect of the superconducting solenoid fuselage model core concept on the spanwise iron magnet roll torque generation schemes. Computed data for one representative configuration indicate that reductions in available roll torque occur over a range of applied magnetic field levels. These results indicate that a 30-percent increase in roll electromagnet capacity over that previously determined will be required for a representative 8-foot wind tunnel magnetic suspension and balance system design.

  14. Electroelastic fields in artificially created vortex cores in epitaxial BiFeO3 thin films

    NASA Astrophysics Data System (ADS)

    Winchester, B.; Balke, N.; Cheng, X. X.; Morozovska, A. N.; Kalinin, S.; Chen, L. Q.

    2015-08-01

    We employ phase-field modeling to explore the elastic properties of artificially created 1-D domain walls in (001)p-oriented BiFeO3 thin films, composed of a junction of the four polarization variants, all with the same out-of-plane polarization. It was found that these junctions exhibit peculiarly high electroelastic fields induced by the neighboring ferroelastic/ferroelectric domains. The vortex core exhibits a volume expansion, while the anti-vortex core is more compressive. Possible ways to control the electroelastic field, such as varying material constant and applying transverse electric field, are also discussed.

  15. Broad bounds on Earth's accretion and core formation constrained by geochemical models

    NASA Astrophysics Data System (ADS)

    Rudge, John F.; Kleine, Thorsten; Bourdon, Bernard

    2010-06-01

    The Earth formed through the accretion of numerous planetary embryos that were already differentiated into a metallic core and silicate mantle. Prevailing models of Earth's formation, constrained by the observed abundances of metal-loving siderophile elements in Earth's mantle, assume full metal-silicate equilibrium, whereby all memory of the planetary embryos' earlier differentiation is lost. Using the hafnium-tungsten (Hf-W) and uranium-lead (U-Pb) isotopic dating systems, these models suggest rapid accretion of Earth's main mass within about 10 million years (Myr) of the formation of the Solar System. Accretion terminated about 30 or 100 Myr after formation of the Solar System, owing to a giant impact that formed the Moon. Here we present geochemical models of Earth's accretion that preserve some memory of the embryos' original differentiation. These disequilibrium models allow some fraction of the embryos' metallic cores to directly enter the Earth's core, without equilibrating with Earth's mantle. We show that disequilibrium models are as compatible with the geochemical observations as equilibrium models, yet still provide bounds on Earth's accretion and core formation. We find that the Hf-W data mainly constrain the degree of equilibration rather than the timing, whereas the U-Pb data confirm that the end of accretion is consistent with recent estimates of the age of the Moon. Our results indicate that only 36% of the Earth's core must have formed in equilibrium with Earth's mantle. This low degree of equilibration is consistent with the siderophile element abundances in Earth's mantle.

  16. An Examination of Family Communication within the Core and Balance Model of Family Leisure Functioning

    ERIC Educational Resources Information Center

    Smith, Kevin M.; Freeman, Patti A.; Zabriskie, Ramon B.

    2009-01-01

    The purpose of this study was to examine family communication within the core and balance model of family leisure functioning. The study was conducted from a youth perspective of family leisure and family functioning. The sample consisted of youth (N= 95) aged 11 - 17 from 25 different states in the United States. Path analyses indicated that…

  17. Model Core Teaching Standards: A Resource for State Dialogue. (Draft for Public Comment)

    ERIC Educational Resources Information Center

    Council of Chief State School Officers, 2010

    2010-01-01

    With this document, the Council of Chief State School Officers (CCSSO) offers for public dialogue and comment a set of model core teaching standards that outline what teachers should know and be able to do to help all students reach the goal of being college- and career-ready in today's world. These standards are an update of the 1992 Interstate…

  18. Can Cognitive Writing Models Inform the Design of the Common Core State Standards?

    ERIC Educational Resources Information Center

    Hayes, John R.; Olinghouse, Natalie G.

    2015-01-01

    In this article, we compare the Common Core State Standards in Writing to the Hayes cognitive model of writing, adapted to describe the performance of young and developing writers. Based on the comparison, we propose the inclusion of standards for motivation, goal setting, writing strategies, and attention by writers to the text they have just…

  19. Development of high frequency spice models for ferrite core inductors and transformers

    SciTech Connect

    Muyshondt, G.P.; Portnoy, W.M. . Dept. of Electrical Engineering)

    1989-01-01

    In this work high frequency SPICE models were developed to simulate the hysteresis and saturation effects of toroidal shaped ferrite core inductors and transformers. The models include the nonlinear, multi-valued B-H characteristic of the core material, leakage flux, stray capacitances, and core losses. The saturation effects were modeled using two diode clamping arrangements in conjunction with nonlinear dependent sources. Two possible controlling schemes were developed for the saturation switch. One of the arrangements used the current flowing through a series RC branch to control the switch, while the other used a NAND gate. The NAND gate implementation of the switch proved to be simpler and the parameters associated with it were easier to determine from the measurements and the B-H characteristics of the material. Lumped parameters were used to simulate the parasitic effects. Techniques for measuring these parasitic are described. The models were verified using manganese-zinc ferrite-type toroidal cores and they have general applicability to all circuit analysis codes equivalent function blocks such as multipliers, adders, and logic components. 7 refs., 22 figs.

  20. Using an Agricultural Model to Establish Core Occupational Competencies for Secondary Vocational Programs.

    ERIC Educational Resources Information Center

    Waidelich, William D.; Hillison, John

    A model was developed for determining critical secondary vocational occupational competencies as rated by industry representatives. The method used to generate the information was an item analysis of competencies that industry experts identified as core competencies in the Ohio Competency Analysis Profile (OCAP) process. The study identified the…

  1. A Strong Core of Qualities--A Model of the Professional Educator that Moves beyond Reflection.

    ERIC Educational Resources Information Center

    McArdle, Karen; Coutts, Norman

    2003-01-01

    Consideration of the qualities of good teaching leads to a new model that emphasizes the importance of sense making to professional development. A strong core of qualities that assist teachers in using sense making includes strength, confidence, balance, ballast, and value maturity. (Contains 27 references.) (SK)

  2. Comparison of retrograde endo-pyelotomy and endo-balloon rupture of the ureteropelvic junction in a porcine model.

    PubMed

    Pearle, M S; Moon, Y T; Endicott, R C; Gardner, S M; Humphrey, P; Clayman, R V

    1994-12-01

    Excellent results and durable success have been achieved with antegrade and retrograde endo-pyelotomy for treating primary and secondary ureteropelvic junction obstruction. Recently, a 30F dilating balloon was used to rupture the ureteropelvic junction (ENDOBRST) with encouraging results. While balloon distention of the ureteropelvic junction is a technically simpler procedure than endo-pyelotomy, clinical and laboratory data comparing the 2 methods are lacking. In an acute and chronic animal study we compared endo-pyelotomy via a ureteral cutting balloon incision to balloon rupture (that is 30F) of the normal ureteropelvic junction in each of 20 female farm pigs. Eight pigs were harvested acutely after treatment, and a macroscopic and histological examination of the treated ureteropelvic junction was completed. In 11 chronic pigs after endo-pyelotomy a 7F double pigtail ureteral stent was placed bilaterally and then removed after 6 weeks. Evaluation in the chronic group consisted of a furosemide washout renogram and retrograde pyelogram immediately preoperatively and 6 weeks after stent removal. The animals were likewise harvested 6 weeks after stent removal. One control pig underwent passage of the balloon cutting catheter and balloon dilating catheters without activation or dilation, respectively. Ureteral stents were placed bilaterally for 6 weeks and the pig was otherwise treated similarly to the other chronic study animals. In the acute group all ureters after endo-pyelotomy demonstrated retroperitoneal extravasation of contrast material. At harvest the ureters had been cleanly incised along a length of 3 to 4 cm. through the adventitial layer. In contrast, the balloon treated ureters showed free retroperitoneal extravasation in only half of the animals. Among the balloon treated ureters 7 of 8 had a linear tear of varying length (1 to 5 cm.) involving all but a thin adventitial layer of tissue. Histologically, the endo-pyelotomy ureters demonstrated a clean

  3. Microanatomy of the cervical and anorectal squamocolumnar junctions: a proposed model for anatomical differences in HPV-related cancer risk

    PubMed Central

    Yang, Eric J.; Quick, Matthew C.; Hanamornroongruang, Suchanan; Lai, Keith; Doyle, Leona; McKeon, Frank D.; Xian, Wa; Crum, Christopher P.; Herfs, Michael

    2015-01-01

    Human papilloma virus (HPV) infection causes cancers and their precursors (high grade squamous intraepithelial lesions) near cervical and anal squamocolumnar junctions. Recently described cervical squamocolumnar junctions cells are putative residual embryonic cells near the cervical transformation zone. These cells appear multipotential and share an identical immunophenotype (strongly CK7-positive) with over 90% of high grade squamous intraepithelial lesions and cervical carcinomas. However, because the number of new cervical cancers discovered yearly world-wide is 17-fold that of anal cancer, we posed the hypothesis that this difference in cancer risk reflects differences in the transition zones at the two sites. The microanatomy of the normal anal transformation zone (n = 37) and topography and immunophenotype of anal squamous neoplasms (n = 97) were studied. A discrete anal transition zone was composed of multi-layered CK7-positive/p63-negative superficial columnar cells and an uninterrupted layer of CK7-negative/p63-positive basal cells. The CK7-negative/p63-positive basal cells were continuous with – and identical in appearance to - the basal cells of the mature squamous epithelium. This was in contrast to the cervical squamocolumnar junction, that harbored a single-layered CK7-positive/p63-negative squamocolumnar junction cell population. Of the 97 Anal intraepithelial neoplasia/squamous cell carcinomas evaluated, only 27% (26/97) appeared to originate near the anal transition zone and only 23% (22/97) were CK7-positive. This study thus reveals two fundamental differences between the anus and cervix: 1) the anal transition zone does not harbor a single monolayer of residual un-differentiated embryonic cells and 2) the dominant tumor immuno-phenotype is in keeping with an origin in metaplastic (CK7-negative) squamous rather than squamocolumnar junction (CK7-positive) epithelium. The implication is that at birth, the embryonic cells in the anal transition

  4. Resolution and Dynamical Core Dependence of Atmospheric River Frequency in Global Model Simulations

    SciTech Connect

    Hagos, Samson M.; Leung, Lai-Yung R.; Yang, Qing; Zhao, Chun; Lu, Jian

    2015-04-01

    This study examines the sensitivity of atmospheric river (AR) frequency simulated by a global model with different grid resolutions and dynamical cores. Analysis is performed on aquaplanet simulations using version 4 of Community Atmosphere Model (CAM4) at 240, 120, 60 and 30 km model resolutions each with the Model for Prediction Across Scales (MPAS) and High-Order Methods Modeling Environment (HOMME) dynamical cores. The frequency of AR events decreases with model resolution and the HOMME dynamical core produces more AR events than MPAS. Comparing the frequencies determined using absolute and percentile thresholds of large-scale conditions used to define an AR, model sensitivity is found to be related to the overall sensitivity of sub-tropical westerlies, atmospheric precipitable water content and profile and to a lesser extent on extra-tropical Rossby wave activity to model resolution and dynamical core. Real world simulations using MPAS at 120 km and 30 km grid resolutions also exhibit a decrease of AR frequency with increasing resolution over southern East Pacific, but there difference is smaller over northern East Pacific. This inter-hemispheric difference is related to the enhancement of convection in over the tropics with increased resolution. This anomalous convection sets off Rossby wave patterns that weaken the subtropical westerlies over southern East Pacific but have relatively little effect on those over northern East Pacific. In comparison to NCEP2 reanalysis, MPAS real world simulations are found to underestimate AR frequencies at both resolutions likely because of their climatologically drier sub-tropics and poleward shifted jets. This study highlights the important links between model climatology of large-scale conditions and extremes.

  5. Core-corona separation in the UrQMD hybrid model

    SciTech Connect

    Steinheimer, J.; Bleicher, M.

    2011-08-15

    We employ the UrQMD transport + hydrodynamics hybrid model to estimate the effects of a separation of the hot equilibrated core and the dilute corona created in high-energy heavy-ion collisions. It is shown that the fraction of the system that can be regarded as an equilibrated fireball changes over a wide range of energies. This has an impact, especially on strange particle abundances. We show that such a core corona separation allows for an improvement in the description of strange particle ratios and flow as a function of beam energy as well as strange particle yields as a function of centrality.

  6. Distribution of local magnetic properties in three-phase induction motor model core

    SciTech Connect

    Enokizono, M.; Morikawa, M.; Fujiyama, S.; Sievert, J.; Serikawa, I.

    1999-09-01

    Efficiency improvement of electrical machines, is a very important problem. However the local magnetic properties in core materials have not yet understood fully. On the other hand, the concept of the two-dimensional magnetic property has been reported. It means the relationship between the magnetic field strength vector H and the flux density vector B. They are not usually parallel but have a phase angle in space. This paper presents the measured local vector-magnetic properties in a three-phase induction motor model core.

  7. Evidence for Symplectic Symmetry in Ab Initio No-Core Shell Model Results for Light Nuclei

    SciTech Connect

    Dytrych, Tomas; Sviratcheva, Kristina D.; Bahri, Chairul; Draayer, Jerry P.; Vary, James P.; /Iowa State U. /LLNL, Livermore /SLAC

    2007-04-24

    Clear evidence for symplectic symmetry in low-lying states of {sup 12}C and {sup 16}O is reported. Eigenstates of {sup 12}C and {sup 16}O, determined within the framework of the no-core shell model using the JISP16 NN realistic interaction, typically project at the 85-90% level onto a few of the most deformed symplectic basis states that span only a small fraction of the full model space. The results are nearly independent of whether the bare or renormalized effective interactions are used in the analysis. The outcome confirms Elliott's SU(3) model which underpins the symplectic scheme, and above all, points to the relevance of a symplectic no-core shell model that can reproduce experimental B(E2) values without effective charges as well as deformed spatial modes associated with clustering phenomena in nuclei.

  8. NUMERICAL MODELING OF MULTI-WAVELENGTH SPECTRA OF M87 CORE EMISSION

    SciTech Connect

    Hilburn, G.; Liang, E. P.

    2012-02-10

    Spectral fits to M87 core data from radio to hard X-ray are generated via a specially selected software suite, comprised of the High-Accuracy Relativistic Magnetohydrodynamics GRMHD accretion disk model and a two-dimensional Monte Carlo radiation transport code. By determining appropriate parameter changes necessary to fit X-ray-quiescent and flaring behavior of M87's core, we assess the reasonableness of various flaring mechanisms. This shows that an accretion disk model of M87's core out to 28 GM/c{sup 2} can describe the inner emissions. High spin rates show GRMHD-driven polar outflow generation, without citing an external jet model. Our results favor accretion rate changes as the dominant mechanism of X-ray flux and index changes, with variations in density of approximately 20% necessary to scale between the average X-ray spectrum and flaring or quiescent spectra. The best-fit parameters are black hole spin a/M > 0.8 and maximum accretion flow density n {<=} 3 Multiplication-Sign 10{sup 7} cm{sup -3}, equivalent to horizon accretion rates between m-dot = M-dot / M-dot{sub Edd}{approx}2 Multiplication-Sign 10{sup -6} and 1 Multiplication-Sign 10{sup -5} (with M-dot{sub Edd} defined assuming a radiative efficiency {eta} = 0.1). These results demonstrate that the immediate surroundings of M87's core are appropriate to explain observed X-ray variability.

  9. Performance analysis of saturated iron core superconducting fault current limiter using Jiles-Atherton hysteresis model

    NASA Astrophysics Data System (ADS)

    Sarkar, D.; Roy, D.; Choudhury, A. B.; Yamada, S.

    2015-09-01

    In this paper study of the Saturated Iron Core Superconducting Fault Current Limiter (SISFCL) has been carried out. Since in an SISFCL, the iron core plays a key role in distributing the magnetic flux, the hysteresis property of the core material has been introduced in a mathematical model to get a more accurate result. In this paper the Jiles-Atherton hysteresis model has been used for modeling the core. The equations are solved through numerical method and performances of SISFCL are analyzed for both normal and fault conditions. On further analysis it is observed that for suppression of higher value of fault current a high voltage develops across the DC source. Hence there is a chance of the DC source being damaged by the rise in voltage under fault condition. In order to protect the DC source, a shorted ring is introduced in the SISFCL circuit and its effects have been analyzed. It is noticed that the shorted ring has successfully reduced the voltage across the DC coil during fault condition while the performance of the limiter remains the same.

  10. Numerical models for the collapse and fragmentation of centrally condensed molecular cloud cores

    NASA Technical Reports Server (NTRS)

    Myhill, Elizabeth A.; Kaula, William M.

    1992-01-01

    The gravitational collapse and fragmentation of centrally condensed molecular cloud cores are investigated using a new hydrodynamical code. The numerical scheme is second-order accurate and uses explicit finite difference methods to advance the fluid variables on a 3D Cartesian grid. Two initial power-law density profiles, rho varies as r exp -1 and rho varies as r exp -2, are considered, as well as two initial density perturbations in the azimuthal coordinate theta, rho-i - rho(1 + a cos 2theta) where a = 0.1 and 0.5. Fragmentation is found to be possible in these centrally condensed cores if the initial conditions also include differential rotation. Models which collapse with initial uniform rotation do not produce fragments. If molecular cloud cores are indeed centrally condensed, as suggested by observations of star-forming regions and by studies of ambipolar diffusion, then differential rotation may be a mechanism for producing binary protostars during gravitational collapse.

  11. Exploratory models of the earth's thermal regime during segregation of the core

    NASA Technical Reports Server (NTRS)

    Davies, G. F.

    1980-01-01

    Some simple exploratory theoretical models of the thermal effects of core segregation have been investigated, assuming an initially homogeneous earth and including convective heat transport through a 'parameterized convection' approximation. The results indicate that either (1) mantle temperatures 30% or more above present values may have resulted from the gravitational energy released during core segregation, (2) the earth retained very little of its accretional energy, (3) core segregation lasted for one billion years or more, or (4) the earth accreted heterogeneously. Option 3 seems to be precluded by terrestrial lead isotope data, and the alternatives each raise substantial questions concerning the mechanics, chemistry, and petrology of the earth's early history. There is no recognized evidence for the early hot phase of option 1, and option 4 implies, among other things, an analogous early hot phase. Although it has not been favored, option 2 may be viable.

  12. Transport model based on three-dimensional cross-section generation for TRIGA core analysis

    SciTech Connect

    Kriangchaiporn, N.; Ivanov, K.; Haghighat, A.; Sears, C. F.

    2006-07-01

    The development of a three-dimensional (3-D) transport model for TRIGA core analysis based on the discrete ordinates (S{sub n}) method has been conducted. The effective fine- and broad- group structures for the TRIGA cross-section libraries were selected based on CPXSD (Contribution and Point-wise Cross-Section Driven) methodology. Different 3-D pin/core configurations are used to verify and validate the selected effective group structures. Thirteen-group structure was finally selected to be used for core analysis. The results agree with continuous energy cross-section Monte Carlo calculations for eigenvalues and normalized pin power distributions, which are used as a reference in this research. (authors)

  13. Noise variation by compressive stress on the model core of power transformers

    NASA Astrophysics Data System (ADS)

    Mizokami, Masato; Kurosaki, Yousuke

    2015-05-01

    The reduction of audible noise generated by cores for power transformers has been required due to environmental concern. It is known that compressive stress in the rolling direction of electrical steel affects magnetostriction and it can result in an increase in noise level. In this research, the effect of compressive stress to noise was investigated on a 3-phase 3-limb model core. Compressive stress was applied in the rolling direction of the limbs from the outside of the core. It increased the sound pressure levels and the slope of the rise was about 2 dBA/MPa. Magnetostriction on single sheet samples was also measured under compressive stress and the harmonic components of the magnetostriction were compared with those of noise. It revealed that the variation in magnetostriction with compressive stress did not entirely correspond to that in noise. In one of the experiments, localized bending happened on one limb during compressing the core. While deformation of the core had not been intended, the noise was measured. The deformation increased the noise by more than 10 dBA and it occurred on most of the harmonic components.

  14. Transport model based on three-dimensional cross-section generation for TRIGA core analysis

    NASA Astrophysics Data System (ADS)

    Kriangchaiporn, Nateekool

    This dissertation addresses the development of a reactor core physics model based on 3-D transport methodology utilizing 3-D multigroup fuel lattice cross-section generation and core calculation for PSBR. The proposed 3-D transport calculation scheme for reactor core simulations is based on the TORT code. The methodology includes development of algorithms for 2-D and 3-D cross-section generation. The fine- and broad-group structures for the TRIGA cross-section generation problems were developed based on the CPXSD (Contributon and Point-wise Cross-Section Driven) methodology that selects effective group structure. Along with the study of cross section generation, the parametric studies for SN calculations were performed to evaluate the impact of the spatial meshing, angular, and scattering order variables and to obtain the suitable values for cross-section collapsing of the TRIGA cell problem. The TRIGA core loading 2 is used to verify and validate the selected effective group structures. Finally, the 13 group structure was selected to use for core calculations. The results agree with continuous energy for eigenvalues and normalized pin power distribution. The Monte Carlo solutions are used as the references.

  15. Immunoglobulins from Animal Models of Motor Neuron Disease and from Human Amyotrophic Lateral Sclerosis Patients Passively Transfer Physiological Abnormalities to the Neuromuscular Junction

    NASA Astrophysics Data System (ADS)

    Apel, Stanley H.; Engelhardt, Jozsef I.; Garcia, Jesus; Stefani, Enrico

    1991-01-01

    Amyotrophic lateral sclerosis (ALS) is a devastating human disease of upper and lower motoneurons of unknown etiology. In support of the potential role of autoimmunity in ALS, two immune-mediated animal models of motoneuron disease have been developed that resemble ALS with respect to the loss of motoneurons, the presence of IgG within motoneurons and at the neuromuscular junction, and with respect to altered physiology of the motor nerve terminal. To provide direct evidence for the primary role of humoral immunity, passive transfer with immunoglobulins from the two animal models and human ALS was carried out. Mice injected with serum or immunoglobulins from the animal disease models and human ALS but not controls demonstrated IgG in motoneurons and at the neuromuscular junction. The mice also demonstrated an increase in miniature end-plate potential (mepp) frequency, with normal amplitude and time course and normal resting membrane potential, indicating an increased resting quantal release of acetylcholine from the nerve terminal. The ability to transfer motoneuron dysfunction with serum immunoglobulins provides evidence for autoimmune mechanisms in the pathogenesis of both the animal models and human ALS.

  16. Studies of mixed HEU-LEU-MTR cores using 3D models

    SciTech Connect

    Haenggi, P.; Lehmann, E.; Hammer, J.; Christen, R.

    1997-08-01

    Several different core loadings were assembled at the SAPHIR research reactor in Switzerland combining the available types of MTR-type fuel elements, consisting mainly of both HEU and LEU fuel. Bearing in mind the well known problems which can occur in such configurations (especially power peaking), investigations have been carried out for each new loading with a 2D neutron transport code (BOXER). The axial effects were approximated by a global buckling value and therefore the radial effects could be studied in considerably detail. Some of the results were reported at earlier RERTR meetings and were compared to those obtained by other methods and with experimental values. For the explicit study of the third dimension of the core, another code (SILWER), which has been developed in PSI for LWR power plant cores, has been selected. With the help of an adapted model for the MTR-core of SAPHIR, several important questions have been addressed. Among other aspects, the estimation of the axial contribution to the hot channel factors, the influence of the control rod position and of the Xe-poisoning on the power distribution were studied. Special attention was given to a core position where a new element was assumed placed near a empty, water filled position. The comparison of elements of low and high enrichments at this position was made in terms of the induced power peaks, with explicit consideration of axial effects. The program SILWER has proven to be applicable to MTR-cores for the investigation of axial effects. For routine use as for the support of reactor operation, this 3D code is a good supplement to the standard 2D model.

  17. The treatment of mixing in core helium burning models - II. Constraints from cluster star counts

    NASA Astrophysics Data System (ADS)

    Constantino, Thomas; Campbell, Simon W.; Lattanzio, John C.; van Duijneveldt, Adam

    2016-03-01

    The treatment of convective boundaries during core helium burning is a fundamental problem in stellar evolution calculations. In the first paper of this series, we showed that new asteroseismic observations of these stars imply they have either very large convective cores or semiconvection/partially mixed zones that trap g modes. We probe this mixing by inferring the relative lifetimes of asymptotic giant branch (AGB) and horizontal branch (HB) from R2, the observed ratio of these stars in recent HST photometry of 48 Galactic globular clusters. Our new determinations of R2 are more self-consistent than those of previous studies and our overall calculation of R2 = 0.117 ± 0.005 is the most statistically robust now available. We also establish that the luminosity difference between the HB and the AGB clump is Δ log {L}_HB^AGB = 0.455 ± 0.012. Our results accord with earlier findings that standard models predict a lower R2 than is observed. We demonstrate that the dominant sources of uncertainty in models are the prescription for mixing and the stochastic effects that can result from its numerical treatment. The luminosity probability density functions that we derive from observations feature a sharp peak near the AGB clump. This constitutes a strong new argument against core breathing pulses, which broaden the predicted width of the peak. We conclude that the two mixing schemes that can match the asteroseismology are capable of matching globular cluster observations, but only if (i) core breathing pulses are avoided in models with a semiconvection/partially mixed zone, or (ii) that models with large convective cores have a particular depth of mixing beneath the Schwarzschild boundary during subsequent early-AGB `gravonuclear' convection.

  18. Model of a tunneling current in a p-n junction based on armchair graphene nanoribbons - an Airy function approach and a transfer matrix method

    SciTech Connect

    Suhendi, Endi; Syariati, Rifki; Noor, Fatimah A.; Khairurrijal; Kurniasih, Neny

    2014-03-24

    We modeled a tunneling current in a p-n junction based on armchair graphene nanoribbons (AGNRs) by using an Airy function approach (AFA) and a transfer matrix method (TMM). We used β-type AGNRs, in which its band gap energy and electron effective mass depends on its width as given by the extended Huckel theory. It was shown that the tunneling currents evaluated by employing the AFA are the same as those obtained under the TMM. Moreover, the calculated tunneling current was proportional to the voltage bias and inversely with temperature.

  19. Gibbs measures for fertile hard-core models on the Cayley tree

    NASA Astrophysics Data System (ADS)

    Khakimov, R. M.

    2016-02-01

    We study fertile hard-core models with the activity parameter λ > 0 and four states on the Cayley tree. It is known that there are three types of such models. For each of these models, we prove the uniqueness of the translation-invariant Gibbs measure for any value of the parameter λ on the Cayley tree of order three. Moreover, for one of the models, we obtain critical values of λ at which the translation-invariant Gibbs measure is nonunique on the Cayley tree of order five. In this case, we verify a sufficient condition (the Kesten-Stigum condition) for a measure not to be extreme.

  20. The importance of measuring growth in response to intervention models: Testing a core assumption.

    PubMed

    Schatschneider, Christopher; Wagner, Richard K; Crawford, Elizabeth C

    2008-01-01

    A core assumption of response to instruction or intervention (RTI) models is the importance of measuring growth in achievement over time in response to effective instruction or intervention. Many RTI models actively monitor growth for identifying individuals who need different levels of intervention. A large-scale (N=23,438), two-year longitudinal study of first grade children was carried out to compare the predictive validity of measures of achievement status, growth in achievement, and their combination for predicting future reading achievement. The results indicate that under typical conditions, measures of growth do not make a contribution to prediction that is independent of measures of achievement status. These results question the validity of a core assumption of RTI models. PMID:22224065

  1. Core and Crustal Geomagnetic Field Modeling Using Oersted and Magsat Data

    NASA Technical Reports Server (NTRS)

    Constable, Catherine; Parker, Robert L.

    1999-01-01

    This grant supplied funding to use Magsat and Oersted magnetic field data to model the magnetic field due to Earth's core and crust. Since the launch of Oersted was significantly delayed and no data were yet available by 5/31/99, the end of the funding period, it is perhaps fortunate that our primary goals were to develop and exploit innovative schemes for modeling the geomagnetic field, including new techniques for minimizing the influence of crustal magnetic fields in core field modelling. We were able to proceed with these efforts independently despite the lack of new observations. The work carried out under this grant has resulted in four peer-reviewed publications, with ongoing work contributing to a fifth in press paper. The research also provided significant contributions to education in PhD theses. Details of the results from this work can be found in the attached copies of the published work.

  2. Sequential processing of hepatitis C virus core protein by host cell signal peptidase and signal peptide peptidase: a reassessment.

    PubMed

    Pène, V; Hernandez, C; Vauloup-Fellous, C; Garaud-Aunis, J; Rosenberg, A R

    2009-10-01

    Hepatitis C virus (HCV) core protein is believed to play critical roles in the virus morphogenesis and pathogenesis. In HCV polyprotein, core protein terminates with a signal peptide followed by E1 envelope protein. It has remained unclear whether cleavage by host cell signal peptidase (SP) at the core-E1 junction to generate the complete form of core protein, which is anchored in the endoplasmic reticulum membrane, is absolutely required for cleavage within the signal peptide by host cell signal peptide peptidase (SPP) to liberate the mature form of core protein, which is then free for trafficking to lipid droplets. In this study, the possible sources of disagreement in published reports have been examined, and we conclude that a product generated upon inhibition of SP-catalysed cleavage at the core-E1 junction in heterologous expression systems was incorrectly identified as mature core protein. Moreover, inhibition of this cleavage in the most relevant model of human hepatoma cells replicating a full-length HCV genome was shown to abolish interaction of core protein with lipid droplets and production of infectious progeny virus. These results firmly establish that SPP-catalysed liberation of mature core protein is absolutely dependent on prior cleavage by SP at the correct core-E1 site to generate the complete form of core protein, consistent with this obligatory order of processing playing a role in HCV infectious cycle. PMID:19281487

  3. Models for the Binary Complex of Bacteriophage T4 Gp59 Helicase Loading Protein. GP32 Single-Stranded DNA-Binding Protein and Ternary Complex with Pseudo-Y Junction DNA

    SciTech Connect

    Hinerman, Jennifer M.; Dignam, J. David; Mueser, Timothy C.

    2012-04-05

    The bacteriophage T4 gp59 helicase assembly protein (gp59) is required for loading of gp41 replicative helicase onto DNA protected by gp32 single-stranded DNA-binding protein. The gp59 protein recognizes branched DNA structures found at replication and recombination sites. Binding of gp32 protein (full-length and deletion constructs) to gp59 protein measured by isothermal titration calorimetry demonstrates that the gp32 protein C-terminal A-domain is essential for protein-protein interaction in the absence of DNA. Sedimentation velocity experiments with gp59 protein and gp32ΔB protein (an N-terminal B-domain deletion) show that these proteins are monomers but form a 1:1 complex with a dissociation constant comparable with that determined by isothermal titration calorimetry. Small angle x-ray scattering (SAXS) studies indicate that the gp59 protein is a prolate monomer, consistent with the crystal structure and hydrodynamic properties determined from sedimentation velocity experiments. SAXS experiments also demonstrate that gp32ΔB protein is a prolate monomer with an elongated A-domain protruding from the core. Moreover, fitting structures of gp59 protein and the gp32 core into the SAXS-derived molecular envelope supports a model for the gp59 protein-gp32ΔB protein complex. Our earlier work demonstrated that gp59 protein attracts full-length gp32 protein to pseudo-Y junctions. A model of the gp59 protein-DNA complex, modified to accommodate new SAXS data for the binary complex together with mutational analysis of gp59 protein, is presented in the accompanying article (Dolezal, D., Jones, C. E., Lai, X., Brister, J. R., Mueser, T. C., Nossal, N. G., and Hinton, D. M. (2012) J. Biol. Chem. 287, 18596–18607).

  4. Modeling Shallow Core-Level Transitions in the Reflectance Spectra of Gallium-Containing Semiconductors

    NASA Astrophysics Data System (ADS)

    Stoute, Nicholas; Aspnes, David

    2012-02-01

    The electronic structure of covalent materials is typically approached by band theory. However, shallow core level transitions may be better modeled by an atomic-scale approach. We investigate shallow d-core level reflectance spectra in terms of a local atomic-multiplet theory, a novel application of a theory typically used for higher-energy transitions on more ionic type material systems. We examine specifically structure in reflectance spectra of GaP, GaAs, GaSb, GaSe, and GaAs1-xPx due to transitions that originate from Ga3d core levels and occur in the 20 to 25 eV range. We model these spectra as a Ga^+3 closed-shell ion whose transitions are influenced by perturbations on 3d hole-4p electron final states. These are specifically spin-orbit effects on the hole and electron, and a crystal-field effect on the hole, attributed to surrounding bond charges and positive ligand anions. Empirical radial-strength parameters were obtained by least-squares fitting. General trends with respect to anion electronegativity are consistent with expectations. In addition to the spin-orbit interaction, crystal-field effects play a significant role in breaking the degeneracy of the d levels, and consequently are necessary to understand shallow 3d core level spectra.

  5. Current status of the no-core Monte Carlo shell model

    NASA Astrophysics Data System (ADS)

    Abe, Takashi; Maris, Pieter; Otsuka, Takaharu; Shimizu, Noritaka; Utsuno, Yutaka; Vary, James

    2014-09-01

    One of the major challenges in nuclear physics is to describe nuclear structure and reactions from first principles. Such ab initio calculations have recently become feasible for nuclear many-body systems beyond A = 4 due to the development of quantum many-body methods along with the rapid evolution of computational technologies. The No-Core Shell Model (NCSM) is one of the relevant ab initio methods and is now available for the study of nuclear structure and reactions in the p-shell nuclei. As the NCSM treats all the nucleons on an equal footing, computational demands for the calculations explode exponentially as the number of nucleons increases. In order to access heavier nuclei, many efforts have been devoted to the NCSM calculations. Among them, the no-core Monte Carlo shell model (MCSM) is one of the promising candidates to go beyond the Full Configuration Interaction method. Here, we report recent developments of the MCSM and its application to the no-core calculations. No-Core Full Configuration results are also presented as full ab initio solutions extrapolated to the infinite basis limit. We compare the NCFC results with the MCSM results extrapolated to the infinite basis space.

  6. A Comparison Between the Diffusion Model and the Combined Diffusion-Thermionic-Emission Model for MS-Junctions by Two-Carrier Numerical Computations

    NASA Astrophysics Data System (ADS)

    Masszi, F.; Stolt, L.; Tove, P. A.; Tarnay, K.

    1981-08-01

    The diffusion model and the combined thermionic-emission-diffusion model for metal-semiconductor junctions have been used in combination with a modified Gummel-De Mari algorithm to obtain one-dimensional, numerical two-carrier solutions, for silicon Schottky diode structures. Solutions for some diode functions vs. voltage, current density, generation-recombination current injection ratio, minority carrier injection ratio, stored charge, and differential capacitance were obtained. For some applied voltages some diode functions vs. positions were calculated: the band diagram including the quasi-Fermi levels, electron and hole carrier density, the total hole current density, the hole drift current density, the electron drift current density and the net charge density. The parameters that have been varied are the barrier height, the carrier life-times, the doping concentration and the length of the diode structure. The results have been compared to and correlate with previous investigations by Vaitkus and Green & Shewchun. A comparison between the diffusion and the combined diffusion-thermionic emission model have been done. Standard methods for determining structure parameters as the 1n I vs. V plot, the Norde plot and the 1/C2 vs. V plot have been applied to the numerical results. From this plot the ideality factor, series resistance, barrier height, doping concentration have been determined and the results have been compared to the originally given parameters. The various models result in significant differences (a) on barrier height dependence of injected minority carrier current density, and (b) on the differential resistance at zero bias voltage. The results have also been compared with fabricated silicide and silicon Schottky diodes.

  7. Impact of the dynamical core on the direct simulation of tropical cyclones in a high-resolution global model

    NASA Astrophysics Data System (ADS)

    Reed, K. A.; Bacmeister, J. T.; Rosenbloom, N. A.; Wehner, M. F.; Bates, S. C.; Lauritzen, P. H.; Truesdale, J. E.; Hannay, C.

    2015-05-01

    This paper examines the impact of the dynamical core on the simulation of tropical cyclone (TC) frequency, distribution, and intensity. The dynamical core, the central fluid flow component of any general circulation model (GCM), is often overlooked in the analysis of a model's ability to simulate TCs compared to the impact of more commonly documented components (e.g., physical parameterizations). The Community Atmosphere Model version 5 is configured with multiple dynamics packages. This analysis demonstrates that the dynamical core has a significant impact on storm intensity and frequency, even in the presence of similar large-scale environments. In particular, the spectral element core produces stronger TCs and more hurricanes than the finite-volume core using very similar parameterization packages despite the latter having a slightly more favorable TC environment. The results suggest that more detailed investigations into the impact of the GCM dynamical core on TC climatology are needed to fully understand these uncertainties.

  8. A statistical model of the human core-temperature circadian rhythm

    NASA Technical Reports Server (NTRS)

    Brown, E. N.; Choe, Y.; Luithardt, H.; Czeisler, C. A.

    2000-01-01

    We formulate a statistical model of the human core-temperature circadian rhythm in which the circadian signal is modeled as a van der Pol oscillator, the thermoregulatory response is represented as a first-order autoregressive process, and the evoked effect of activity is modeled with a function specific for each circadian protocol. The new model directly links differential equation-based simulation models and harmonic regression analysis methods and permits statistical analysis of both static and dynamical properties of the circadian pacemaker from experimental data. We estimate the model parameters by using numerically efficient maximum likelihood algorithms and analyze human core-temperature data from forced desynchrony, free-run, and constant-routine protocols. By representing explicitly the dynamical effects of ambient light input to the human circadian pacemaker, the new model can estimate with high precision the correct intrinsic period of this oscillator ( approximately 24 h) from both free-run and forced desynchrony studies. Although the van der Pol model approximates well the dynamical features of the circadian pacemaker, the optimal dynamical model of the human biological clock may have a harmonic structure different from that of the van der Pol oscillator.

  9. Simulating High Flux Isotope Reactor Core Thermal-Hydraulics via Interdimensional Model Coupling

    SciTech Connect

    Travis, Adam R

    2014-05-01

    A coupled interdimensional model is presented for the simulation of the thermal-hydraulic characteristics of the High Flux Isotope Reactor core at Oak Ridge National Laboratory. The model consists of two domains a solid involute fuel plate and the surrounding liquid coolant channel. The fuel plate is modeled explicitly in three-dimensions. The coolant channel is approximated as a twodimensional slice oriented perpendicular to the fuel plate s surface. The two dimensionally-inconsistent domains are linked to one another via interdimensional model coupling mechanisms. The coupled model is presented as a simplified alternative to a fully explicit, fully three-dimensional model. Involute geometries were constructed in SolidWorks. Derivations of the involute construction equations are presented. Geometries were then imported into COMSOL Multiphysics for simulation and modeling. Both models are described in detail so as to highlight their respective attributes in the 3D model, the pursuit of an accurate, reliable, and complete solution; in the coupled model, the intent to simplify the modeling domain as much as possible without affecting significant alterations to the solution. The coupled model was created with the goal of permitting larger portions of the reactor core to be modeled at once without a significant sacrifice to solution integrity. As such, particular care is given to validating incorporated model simplifications. To the greatest extent possible, the decrease in solution time as well as computational cost are quantified versus the effects such gains have on the solution quality. A variant of the coupled model which sufficiently balances these three solution characteristics is presented alongside the more comprehensive 3D model for comparison and validation.

  10. Preliminary design report for SCDAP/RELAP5 lower core plate model

    SciTech Connect

    Coryell, E.W.; Griffin, F.P.

    1998-07-01

    The SCDAP/RELAP5 computer code is a best-estimate analysis tool for performing nuclear reactor severe accident simulations. Under primary sponsorship of the US Nuclear Regulatory Commission (NRC), Idaho National Engineering and Environmental Laboratory (INEEL) is responsible for overall maintenance of this code and for improvements for pressurized water reactor (PWR) applications. Since 1991, Oak Ridge National Laboratory (ORNL) has been improving SCDAP/RELAP5 for boiling water reactor (BWR) applications. The RELAP5 portion of the code performs the thermal-hydraulic calculations for both normal and severe accident conditions. The structures within the reactor vessel and coolant system can be represented with either RELAP5 heat structures or SCDAP/RELAP5 severe accident structures. The RELAP5 heat structures are limited to normal operating conditions (i.e., no structural oxidation, melting, or relocation), while the SCDAP portion of the code is capable of representing structural degradation and core damage progression that can occur under severe accident conditions. DCDAP/RELAP5 currently assumes that molten material which leaves the core region falls into the lower vessel head without interaction with structural materials. The objective of this design report is to describe the modifications required for SCDAP/RELAP5 to treat the thermal response of the structures in the core plate region as molten material relocates downward from the core, through the core plate region, and into the lower plenum. This has been a joint task between INEEL and ORNL, with INEEL focusing on PWR-specific design, and ORNL focusing upon the BWR-specific aspects. Chapter 2 describes the structures in the core plate region that must be represented by the proposed model. Chapter 3 presents the available information about the damage progression that is anticipated to occur in the core plate region during a severe accident, including typical SCDAP/RELAP5 simulation results. Chapter 4 provides a

  11. The Cusp/Core problem: supernovae feedback versus the baryonic clumps and dynamical friction model

    NASA Astrophysics Data System (ADS)

    Del Popolo, A.; Pace, F.

    2016-05-01

    In the present paper, we compare the predictions of two well known mechanisms considered able to solve the cusp/core problem (a. supernova feedback; b. baryonic clumps-DM interaction) by comparing their theoretical predictions to recent observations of the inner slopes of galaxies with masses ranging from dSphs to normal spirals. We compare the α-V_{rot} and the α-M_{ast} relationships, predicted by the two models with high resolution data coming from Adams et al. (Astrophys. J. 789, 63, 2014), Simon et al. (Astrophys. J. 621, 757, 2005), LITTLE THINGS (Oh et al. in Astron. J. 149, 180, 2015), THINGS dwarves (Oh et al. in Astron. J. 141, 193, 2011a; Oh et al. in Astron. J. 142, 224, 2011b), THINGS spirals (Oh et al. in Astron. J. 149, 180, 2015), Sculptor, Fornax and the Milky Way. The comparison of the theoretical predictions with the complete set of data shows that the two models perform similarly, while when we restrict the analysis to a smaller subsample of higher quality, we show that the method presented in this paper (baryonic clumps-DM interaction) performs better than the one based on supernova feedback. We also show that, contrarily to the first model prediction, dSphs of small mass could have cored profiles. This means that observations of cored inner profiles in dSphs having a stellar mass <106 M_{⊙} not necessarily imply problems for the ΛCDM model.

  12. Monte Carlo Error Analysis Applied to Core Formation: The Single-stage Model Revived

    NASA Astrophysics Data System (ADS)

    Cottrell, E.; Walter, M. J.

    2009-12-01

    The last decade has witnessed an explosion of studies that scrutinize whether or not the siderophile element budget of the modern mantle can plausibly be explained by metal-silicate equilibration in a deep magma ocean during core formation. The single-stage equilibrium scenario is seductive because experiments that equilibrate metal and silicate can then serve as a proxy for the early earth, and the physical and chemical conditions of core formation can be identified. Recently, models have become more complex as they try to accommodate the proliferation of element partitioning data sets, each of which sets its own limits on the pressure, temperature, and chemistry of equilibration. The ability of single stage models to explain mantle chemistry has subsequently been challenged, resulting in the development of complex multi-stage core formation models. Here we show that the extent to which extant partitioning data are consistent with single-stage core formation depends heavily upon (1) the assumptions made when regressing experimental partitioning data (2) the certainty with which regression coefficients are known and (3) the certainty with which the core/mantle concentration ratios of the siderophile elements are known. We introduce a Monte Carlo algorithm coded in MATLAB that samples parameter space in pressure and oxygen fugacity for a given mantle composition (nbo/t) and liquidus, and returns the number of equilibrium single-stage liquidus “solutions” that are permissible, taking into account the uncertainty in regression parameters and range of acceptable core/mantle ratios. Here we explore the consequences of regression parameter uncertainty and the impact of regression construction on model outcomes. We find that the form of the partition coefficient (Kd with enforced valence state, or D) and the handling of the temperature effect (based on 1-atm free energy data or high P-T experimental observations) critically affects model outcomes. We consider the most

  13. Scalability and Efficiency of Earth System Models in the Multi-Core-Age

    NASA Astrophysics Data System (ADS)

    Biercamp, J.; Adamidis, P.; Jahns, T.; Rosenhauer, M.

    2009-04-01

    Climate and Earth system modeling today is performed with intricate systems of coupled models. Complexity and spatial resolution of these models is limited by computing resources. Necessary and envisaged improvements will require an increase of the computing power available to climate models by several orders of magnitude. Until very recently the speed of a single CPU (central processing unit) doubled roughly every two years. This has come to an end for technical and physical reasons. The new rule of thumb says that the number of computational cores will double every two years. Climate modelers will have to learn how to use very large numbers of cores in parallel. Modern supercomputer already use thousands of cores. If, with a global atmosphere model, we wanted to achieve 1000 forecast days per day at a horizontal resolution of 1km, we would need to run it on more than 10.000.000 processing units in parallel. Today nobody knows how to program such an application, how to handle the enormous data streams produced by it and how to pay for the power bill of such a machine. In this talk we will discuss our strategies to scale earth system models to high numbers of processor cores. We will mainly focus on two projects. "ScalES" (Scalable Earth System Models) is a BMBF funded project led by DKRZ which started in January 2009. In this project we will identify bottlenecks which inhibit efficient scaling of typical climate models and will implement prototype solutions in the COSMOS coupled Earth system model. In particular the project will address parallel I/O, load balancing, efficient parallel coupling of component models and efficient use of state-of-the-art computer architectures. "PeAKliM" (Petaflop-Architectures in Climate und Meteorology) is a joint initiative of climate researchers and mathematicians which aims at tackling the question, what kind of architecture is best suited for climate and weather models and to already now investigate into algorithms for future

  14. Coherent network analysis of gravitational waves from three-dimensional core-collapse supernova models

    NASA Astrophysics Data System (ADS)

    Hayama, Kazuhiro; Kuroda, Takami; Kotake, Kei; Takiwaki, Tomoya

    2015-12-01

    Using predictions from three-dimensional (3D) hydrodynamics simulations of core-collapse supernovae (CCSNe), we present a coherent network analysis for the detection, reconstruction, and source localization of the gravitational-wave (GW) signals. We use the RIDGE pipeline for the analysis, in which the network of LIGO Hanford, LIGO Livingston, VIRGO, and KAGRA is considered. By combining with a GW spectrogram analysis, we show that several important hydrodynamics features in the original waveforms persist in the waveforms of the reconstructed signals. The characteristic excess in the spectrograms originates not only from the rotating core collapse, bounce, and subsequent ringdown of the proto-neutron star (PNS) as previously identified, but also from the formation of magnetohydrodynamics jets and nonaxisymmetric instabilities in the vicinity of the PNS. Regarding the GW signals emitted near the rotating core bounce, the horizon distance extends up to ˜18 kpc for the most rapidly rotating 3D model in this work. Following the rotating core bounce, the dominant source of the GW emission shifts to the nonaxisymmetric instabilities. The horizon distances extend maximally up to ˜40 kpc seen from the spin axis. With an increasing number of 3D models trending towards explosion recently, our results suggest that in addition to the best-studied GW signals due to rotating core collapse and bounce, the time is ripe to consider how we can do science from GWs of CCSNe much more seriously than before. In particular, the quasiperiodic signals due to the nonaxisymmetric instabilities and the detectability deserves further investigation to elucidate the inner workings of the rapidly rotating CCSNe.

  15. Core-softened fluids as a model for water and the hydrophobic effect

    PubMed Central

    Huš, Matej; Urbic, Tomaz

    2013-01-01

    An interaction model with core-softened potential in three dimensions was studied by Monte Carlo computer simulations and integral equation theory. We investigated the possibility that a fluid with a core-softened potential can reproduce anomalies found experimentally in liquid water, such as the density anomaly, the minimum in the isothermal compressibility as a function of temperature, and others. Critical points of the fluid were also determined. We provided additional arguments that the old notion, postulating that only angular-dependent interactions result in density anomaly, is incorrect. We showed that potential with two characteristic distances is sufficient for the system to exhibit water-like behavior and anomalies, including the famous density maximum. We also found that this model can properly describe the hydrophobic effect. PMID:24070294

  16. Core-halo quasi-stationary states in the Hamiltonian mean-field model

    NASA Astrophysics Data System (ADS)

    Konishi, Eiji

    2016-04-01

    A characteristic feature of long-range interacting systems is that they become trapped in a non-equilibrium and long-lived quasi-stationary state (QSS) during the early stages of their development. We present a comprehensive review of recent studies of the core-halo structure of QSSs, in the Hamiltonian mean-field model (HMF), which is a mean-field model of mutually coupled ferromagnetic XY spins located at a point, obtained by starting from various unsteady rectangular water-bag type initial phase-space distributions. The main result exposed in this review is that the core-halo structure can be described by the superposition of two independent Lynden-Bell distributions. We discuss the completeness of collisionless relaxation of this double Lynden-Bell distribution by using both of Lynden-Bell entropy and double Lynden-Bell entropy for the systems at low energies per particle.

  17. Seismic anisotropy in the Earth's innermost inner core: Testing structural models against mineral physics predictions

    NASA Astrophysics Data System (ADS)

    Romanowicz, Barbara; Cao, Aimin; Godwal, Budhiram; Wenk, Rudy; Ventosa, Sergi; Jeanloz, Raymond

    2016-01-01

    Using an updated data set of ballistic PKIKP travel time data at antipodal distances, we test different models of anisotropy in the Earth's innermost inner core (IMIC) and obtain significantly better fits for a fast axis aligned with Earth's rotation axis, rather than a quasi-equatorial direction, as proposed recently. Reviewing recent results on the single crystal structure and elasticity of iron at core conditions, we find that an hcp structure with the fast c axis parallel to Earth's rotation is more likely but a body-centered cubic structure with the [111] axis aligned in that direction results in very similar predictions for seismic anisotropy. These models are therefore not distinguishable based on current seismological data. In addition, to match the seismological observations, the inferred strength of anisotropy in the IMIC (6-7%) implies almost perfect alignment of iron crystals, an intriguing, albeit unlikely situation, especially in the presence of heterogeneity, which calls for further studies.

  18. Computing Scattering Characteristics Of Waveguide Junctions

    NASA Technical Reports Server (NTRS)

    Hoppe, Daniel J.; Manshadi, Farzin

    1994-01-01

    Rectangular WaveGuide Junction SCATtering RWGSCAT computer program solves scattering properties of waveguide device. Modeled as assembly of rectangular waveguides of different cross sections. RWGSCAT written in FORTRAN 77.

  19. Local Frame Junction Trees in SLAM

    NASA Astrophysics Data System (ADS)

    Kuehnel, Frank O.

    2005-11-01

    Junction trees (JT) is a general purpose tool for exact inference on graphical models. Many of the existing algorithms for building junction trees require a fixed static graphical model. The construction process is not unique, finding the one with the best computational structure (smallest clique size) is also a hard problem. For large scale inference problems, such as Geo-referencing using triangular geodetic networks or equivalent, the simultaneous localization and mapping (SLAM) problem in robotics pose some challenges to junction tree applications. Incremental junction tree techniques for dynamic graphical models prescribe heuristic methods for growing the tree structure, and are applicable to large scale graphical models. Of concern are the proliferative widening of the tree, which makes message passing expensive. In the context of SLAM we present a new apporach that exploits the local frame dependence of novel observation variables.

  20. Reprogramming of cell junction modules during stepwise epithelial to mesenchymal transition and accumulation of malignant features in vitro in a prostate cell model.

    PubMed

    Ke, Xi-song; Li, Wen-cheng; Hovland, Randi; Qu, Yi; Liu, Run-hui; McCormack, Emmet; Thorsen, Frits; Olsen, Jan Roger; Molven, Anders; Kogan-Sakin, Ira; Rotter, Varda; Akslen, Lars A; Oyan, Anne Margrete; Kalland, Karl-Henning

    2011-01-15

    Epithelial to mesenchymal transition (EMT) is pivotal in tumor metastasis. Our previous work reported an EMT model based on primary prostate epithelial cells (EP156T) which gave rise to cells with mesenchymal phenotype (EPT1) without malignant transformation. To promote prostate cell transformation, cells were maintained in saturation density cultures to select for cells overriding quiescence. Foci formed repeatedly following around 8 weeks in confluent EPT1 monolayers. Only later passage EPT1, but not EP156T cells of any passage, could form foci. Cells isolated from the foci were named EPT2 and formed robust colonies in soft agar, a malignant feature present neither in EP156T nor in EPT1 cells. EPT2 cells showed additional malignant traits in vitro, including higher ability to proliferate following confluence, higher resistance to apoptosis and lower dependence on exogenous growth factors than EP156T and EPT1 cells. Microarray profiling identified gene sets, many of which belong to cell junction modules, that changed expression from EP156T to EPT1 cells and continued to change from EPT1 to EPT2 cells. Our findings provide a novel stepwise cell culture model in which EMT emerges independently of transformation and is associated with subsequent accumulation of malignant features in prostate cells. Reprogramming of cell junction modules is involved in both steps. PMID:20969863

  1. Modeling heterogeneous polymer-grafted nanoparticle networks having biomimetic core-shell structure

    NASA Astrophysics Data System (ADS)

    Mbanga, Badel L.; Yashin, Victor V.; Holten-Andersen, Niels; Balazs, Anna C.

    Inspired by the remarkable mechanical properties of such biological structures as mussel adhesive fibers, we use 3D computational modeling to study the behavior of heterogeneous polymer-grafted nanoparticle (PGN) networks under tensile deformation. The building block of a PGN network is a nanoparticle with grafted polymer chains whose free ends' reactive groups can form both permanent and labile bonds with the end chains on the nearby particles. The tunable behavior of cross-linked PGN networks makes them excellent candidates for designing novel materials with enhanced mechanical properties. Here, we consider the PGN networks having the core-shell structures, in which the type and strength of the inter-particle bonds in the outer shell differ from those in the core. Using the computer simulations, we obtain and compare the ultimate tensile properties (strength, toughness, ductility) and the strain recovery properties for the uniform samples and various core-shell structures. We demonstrate that the core-shell structures could be designed to obtain highly resilient self-healing materials

  2. Core-envelope and regular models in Einstein-Maxwell fields

    NASA Astrophysics Data System (ADS)

    Hansraj, Sudan; Maharaj, Sunil Dutt; Mlaba, Sphakamiso

    2016-01-01

    New classes of exact solutions which could serve as sources for the Reissner-Nordstrom metric representing the exterior gravitational field of an isolated charged sphere are derived. Firstly, we sacrifice the requirement that the stellar centre is free of a singularity and then obtain a core-envelope model. The charged fluid envelope is matched suitably to the neutral core and the vacuum exterior solution. Next we investigate models of charged stars that are regular at the stellar centre. The Einstein-Maxwell system of partial differential equations is reduced to the study of a single first-order differential equation in which two of the matter or geometrical variables must be specified at the outset. In each case mentioned above, new exact models are found by choosing functional forms for the electric field intensity and one of the gravitational potentials. A Riccati equation is then solved to obtain the remaining potential. The charged spherical shell model as well as the non-singular models are shown to display necessary qualitative features that are demanded for physical acceptability. It is shown that the regular model has a vanishing pressure-free hypersurface. The density and pressure profiles are positive and monotonically decreasing outwards from the centre of the sphere for a chosen set of parameters. The weak strong and dominant energy conditions are also satisfied. A drawback of the model is that the causality criterion is not satisfied within the fluid boundary.

  3. Failure Predictions for VHTR Core Components using a Probabilistic Contiuum Damage Mechanics Model

    SciTech Connect

    Fok, Alex

    2013-10-30

    The proposed work addresses the key research need for the development of constitutive models and overall failure models for graphite and high temperature structural materials, with the long-term goal being to maximize the design life of the Next Generation Nuclear Plant (NGNP). To this end, the capability of a Continuum Damage Mechanics (CDM) model, which has been used successfully for modeling fracture of virgin graphite, will be extended as a predictive and design tool for the core components of the very high- temperature reactor (VHTR). Specifically, irradiation and environmental effects pertinent to the VHTR will be incorporated into the model to allow fracture of graphite and ceramic components under in-reactor conditions to be modeled explicitly using the finite element method. The model uses a combined stress-based and fracture mechanics-based failure criterion, so it can simulate both the initiation and propagation of cracks. Modern imaging techniques, such as x-ray computed tomography and digital image correlation, will be used during material testing to help define the baseline material damage parameters. Monte Carlo analysis will be performed to address inherent variations in material properties, the aim being to reduce the arbitrariness and uncertainties associated with the current statistical approach. The results can potentially contribute to the current development of American Society of Mechanical Engineers (ASME) codes for the design and construction of VHTR core components.

  4. An algorithm for deriving core magnetic field models from the Swarm data set

    NASA Astrophysics Data System (ADS)

    Rother, Martin; Lesur, Vincent; Schachtschneider, Reyko

    2013-11-01

    In view of an optimal exploitation of the Swarm data set, we have prepared and tested software dedicated to the determination of accurate core magnetic field models and of the Euler angles between the magnetic sensors and the satellite reference frame. The dedicated core field model estimation is derived directly from the GFZ Reference Internal Magnetic Model (GRIMM) inversion and modeling family. The data selection techniques and the model parameterizations are similar to what were used for the derivation of the second (Lesur et al., 2010) and third versions of GRIMM, although the usage of observatory data is not planned in the framework of the application to Swarm. The regularization technique applied during the inversion process smoothes the magnetic field model in time. The algorithm to estimate the Euler angles is also derived from the CHAMP studies. The inversion scheme includes Euler angle determination with a quaternion representation for describing the rotations. It has been built to handle possible weak time variations of these angles. The modeling approach and software have been initially validated on a simple, noise-free, synthetic data set and on CHAMP vector magnetic field measurements. We present results of test runs applied to the synthetic Swarm test data set.

  5. Crack growth rate in core shroud horizontal welds using two models for a BWR

    NASA Astrophysics Data System (ADS)

    Arganis Juárez, C. R.; Hernández Callejas, R.; Medina Almazán, A. L.

    2015-05-01

    An empirical crack growth rate correlation model and a predictive model based on the slip-oxidation mechanism for Stress Corrosion Cracking (SCC) were used to calculate the crack growth rate in a BWR core shroud. In this study, the crack growth rate was calculated by accounting for the environmental factors related to aqueous environment, neutron irradiation to high fluence and the complex residual stress conditions resulting from welding. In estimating the SCC behavior the crack growth measurements data from a Boiling Water Reactor (BWR) plant are referred to, and the stress intensity factor vs crack depth throughout thickness is calculated using a generic weld residual stress distribution for a core shroud, with a 30% stress relaxation induced by neutron irradiation. Quantitative agreement is shown between the measurements of SCC growth rate and the predictions of the slip-oxidation mechanism model for relatively low fluences (5 × 1024 n/m2), and the empirical model predicted better the SCC growth rate than the slip-oxidation model for high fluences (>1 × 1025 n/m2). The relevance of the models predictions for SCC growth rate behavior depends on knowing the model parameters.

  6. A two-dimensional approach to modelling the short timescale zonal flow in Earth's core

    NASA Astrophysics Data System (ADS)

    More, C.; Dumberry, M.

    2015-12-01

    Reconstructions of flow in Earth's outer core based on surface magnetic data predict mean zonal accelerations on several timescales. Since accelerations in the core couple to the angular momentum of the mantle, their existence has been confirmed by length-of-day observations. Recent studies suggest that free modes of torsional oscillations are responsible for relatively weak signals with a 5-6 year period. The mechanisms responsible for stronger decadal signals are less well understood.To address the problem, we construct a quasi-geostrophic model of magnetoconvection, with thermally-driven flows perturbing a steady, imposed background magnetic field. This approach is justified by the Taylor-Proudman theorem, in which velocities in a rapidly rotating system vary little parallel to the rotational axis. Using only two dimensions allows a much more rapid exploration of parameter space than traditional three-dimensional approaches.Our model is capable of producing mean zonal accelerations similar to those predicted by the geomagnetic reconstructions of Earth. In particular, we see a clear separation in period between the free modes (short) and forced modes (long) of torsional oscillations. We then systematically run the model with a variety of parameters, attempting to extrapolate our results to the conditions found in Earth's core.

  7. Computational Atomistic Modeling of Bi-Magnetic Core-Shell Nanoparticles

    NASA Astrophysics Data System (ADS)

    Sahay, Rahul; Peralta, Juan; Caruntu, Gabriel

    Since its discovery, there has been an increasing interest in the modeling of magnetic phenomena found in materials that present exchange bias. In particular, ferro-antiferromagnetic core-shell nanoparticles are an interesting case in which the magnetic properties of the nanostructure can be altered by adjusting their size, shape, and composition. Here we present a computational scheme that efficiently models the magnetic behavior of bi-magnetic core-shell nanostructures. Using a Heisenberg-Dirac-van Vleck Hamiltonian in combination with a continuous spin model, we simulate a wide range of hysteresis diagrams displaying exchange bias. Furthermore, we will demonstrate our efforts towards improving the efficiency of the simulation algorithms, aiming to afford magnetic atomistic simulations of large nanostructures by using a method based on a tessellated unit sphere to account for spin orientations. Our results allow for further semi-quantitative comparisons with existing experimental data and provide a means to discover new phenomena associated with these core-shell nanoparticles and other nanostructures. NSF DMR-1206920.

  8. Ion bipolar junction transistors.

    PubMed

    Tybrandt, Klas; Larsson, Karin C; Richter-Dahlfors, Agneta; Berggren, Magnus

    2010-06-01

    Dynamic control of chemical microenvironments is essential for continued development in numerous fields of life sciences. Such control could be achieved with active chemical circuits for delivery of ions and biomolecules. As the basis for such circuitry, we report a solid-state ion bipolar junction transistor (IBJT) based on conducting polymers and thin films of anion- and cation-selective membranes. The IBJT is the ionic analogue to the conventional semiconductor BJT and is manufactured using standard microfabrication techniques. Transistor characteristics along with a model describing the principle of operation, in which an anionic base current amplifies a cationic collector current, are presented. By employing the IBJT as a bioelectronic circuit element for delivery of the neurotransmitter acetylcholine, its efficacy in modulating neuronal cell signaling is demonstrated. PMID:20479274

  9. Ion bipolar junction transistors

    PubMed Central

    Tybrandt, Klas; Larsson, Karin C.; Richter-Dahlfors, Agneta; Berggren, Magnus

    2010-01-01

    Dynamic control of chemical microenvironments is essential for continued development in numerous fields of life sciences. Such control could be achieved with active chemical circuits for delivery of ions and biomolecules. As the basis for such circuitry, we report a solid-state ion bipolar junction transistor (IBJT) based on conducting polymers and thin films of anion- and cation-selective membranes. The IBJT is the ionic analogue to the conventional semiconductor BJT and is manufactured using standard microfabrication techniques. Transistor characteristics along with a model describing the principle of operation, in which an anionic base current amplifies a cationic collector current, are presented. By employing the IBJT as a bioelectronic circuit element for delivery of the neurotransmitter acetylcholine, its efficacy in modulating neuronal cell signaling is demonstrated. PMID:20479274

  10. Zipper and freeway shear zone junctions

    NASA Astrophysics Data System (ADS)

    Passchier, Cees; Platt, John

    2016-04-01

    Ductile shear zones are usually presented as isolated planar high-strain domains in a less deformed wall rock, characterised by shear sense indicators such as characteristic deflected foliation traces. Many shear zones, however, form branched systems and if movement on such branches is contemporaneous, the resulting geometry can be complicated and lead to unusual fabric geometries in the wall rock. For Y-shaped shear zone junctions with three simultaneously operating branches, and with slip directions at a high angle to the branch line, eight basic types of shear zone triple junctions are possible, divided into three groups. The simplest type, called freeway junctions, have similar shear sense on all three branches. If shear sense is different on the three branches, this can lead to space problems. Some of these junctions have shear zone branches that join to form a single branch, named zipper junctions, or a single shear zone which splits to form two, known as wedge junctions. Closing zipper junctions are most unusual, since they form a non-active high-strain zone with opposite deflection of foliations. Shear zipper and shear wedge junctions have two shear zones with similar shear sense, and one with the opposite sense. All categories of shear zone junctions show characteristic flow patterns in the shear zone and its wall rock. Shear zone junctions with slip directions normal to the branch line can easily be studied, since ideal sections of shear sense indicators lie in the plane normal to the shear zone branches and the branch line. Expanding the model to allow slip oblique and parallel to the branch line in a full 3D setting gives rise to a large number of geometries in three main groups. Slip directions can be parallel on all branches but oblique to the branch line: two slip directions can be parallel and a third oblique, or all three branches can have slip in different directions. Such more complex shear zone junctions cannot be studied to advantage in a

  11. Selenium-modified titanium dioxide photochemical diode/electrolyte junctions: photocatalytic and electrochemical preparation, characterization, and model simulations.

    PubMed

    de Tacconi, Norma R; Chenthamarakshan, C R; Rajeshwar, Krishnan; Tacconi, Eugenio J

    2005-06-23

    The photoelectrochemical behavior of TiO2 thin film electrodes, photocatalytically modified with Se islands, is described. The TiO2 thin films were electrodeposited on transparent conducting oxide glass substrates. The resultant electrode forms a n-TiO2/p-Se "photochemical diode" which, in turn, contacts an electrolyte phase. Both transient photocurrent profiles (in response to excitation light that is switched on or off) and steady-state current-potential curves in response to chopped irradiation are considered. We show that the relative dominance of the contributions from the TiO2 and Se components to the overall response of the photochemical diode/electrolyte junction crucially depends on the wavelength distribution of the excitation light source. A simple equivalent circuit representation of this junction is presented, comprised of a photodiode in parallel with two photodiodes connected in series back-to-back. Simulations of the transient and steady-state photoelectrochemical response of this system are presented, and are shown to be in good agreement with the corresponding experimental profiles. PMID:16852473

  12. Competitive repetition suppression (CoRe) clustering: a biologically inspired learning model with application to robust clustering.

    PubMed

    Bacciu, Davide; Starita, Antonina

    2008-11-01

    Determining a compact neural coding for a set of input stimuli is an issue that encompasses several biological memory mechanisms as well as various artificial neural network models. In particular, establishing the optimal network structure is still an open problem when dealing with unsupervised learning models. In this paper, we introduce a novel learning algorithm, named competitive repetition-suppression (CoRe) learning, inspired by a cortical memory mechanism called repetition suppression (RS). We show how such a mechanism is used, at various levels of the cerebral cortex, to generate compact neural representations of the visual stimuli. From the general CoRe learning model, we derive a clustering algorithm, named CoRe clustering, that can automatically estimate the unknown cluster number from the data without using a priori information concerning the input distribution. We illustrate how CoRe clustering, besides its biological plausibility, posses strong theoretical properties in terms of robustness to noise and outliers, and we provide an error function describing CoRe learning dynamics. Such a description is used to analyze CoRe relationships with the state-of-the art clustering models and to highlight CoRe similitude with rival penalized competitive learning (RPCL), showing how CoRe extends such a model by strengthening the rival penalization estimation by means of loss functions from robust statistics. PMID:19000963

  13. A spectral transform dynamical core option within the Community Atmosphere Model (CAM4)

    SciTech Connect

    Evans, Katherine J; Mahajan, Salil; Branstetter, Marcia L; McClean, Julie L.; Caron, Julie M.; Maltrud, Matthew E.; Hack, James J; Bader, David C; Neale, Rich

    2014-01-01

    A spectral transform dynamical core with an 85 spectral truncation resolution (T85) within the Community Atmosphere Model (CAM), version 4, is evaluated within the recently released Community Earth System Model, version 1.0 (CESM) global climate model. The spectral dynamical core option provides a well-known base within the climate model community from which to assess climate behavior and statistics, and its relative computational efficiency for smaller computing platforms allows it to be extended to perform climate length simulations using high-resolution configurations in the near term. To establish the characteristics of the CAM4 T85, an ensemble of simulations covering the present day observational period using forced sea surface temperatures and prescribed sea-ice extent are evaluated. Overall, the T85 ensemble attributes and biases are similar to a companion ensemble of simulations using the one degree finite volume (FV1) dynamical core, relative to observed and model derived datasets. Notable improvements with T85 compared to FV1 include the representation of wintertime Arctic sea level pressure and summer precipitation over the Western Indian subcontinent. The mean and spatial patterns of the land surface temperature trends over the AMIP period are generally well simulated with the T85 ensemble relative to observations, however the model is not able to capture the extent nor magnitude of changes in temperature extremes over the boreal summer, where the changes are most dramatic. Biases in the wintertime Arctic surface temperature and annual mean surface stress fields persist with T85 as with the CAM3 version of T85.

  14. Severe accident modeling of a PWR core with different cladding materials

    SciTech Connect

    Johnson, S. C.; Henry, R. E.; Paik, C. Y.

    2012-07-01

    The MAAP v.4 software has been used to model two severe accident scenarios in nuclear power reactors with three different materials as fuel cladding. The TMI-2 severe accident was modeled with Zircaloy-2 and SiC as clad material and a SBO accident in a Zion-like, 4-loop, Westinghouse PWR was modeled with Zircaloy-2, SiC, and 304 stainless steel as clad material. TMI-2 modeling results indicate that lower peak core temperatures, less H 2 (g) produced, and a smaller mass of molten material would result if SiC was substituted for Zircaloy-2 as cladding. SBO modeling results indicate that the calculated time to RCS rupture would increase by approximately 20 minutes if SiC was substituted for Zircaloy-2. Additionally, when an extended SBO accident (RCS creep rupture failure disabled) was modeled, significantly lower peak core temperatures, less H 2 (g) produced, and a smaller mass of molten material would be generated by substituting SiC for Zircaloy-2 or stainless steel cladding. Because the rate of SiC oxidation reaction with elevated temperature H{sub 2}O (g) was set to 0 for this work, these results should be considered preliminary. However, the benefits of SiC as a more accident tolerant clad material have been shown and additional investigation of SiC as an LWR core material are warranted, specifically investigations of the oxidation kinetics of SiC in H{sub 2}O (g) over the range of temperatures and pressures relevant to severe accidents in LWR 's. (authors)

  15. Converging sequences in the ab initio no-core shell model

    SciTech Connect

    Forssen, C.; Vary, J. P.; Caurier, E.; Navratil, P.

    2008-02-15

    We demonstrate the existence of multiple converging sequences in the ab initio no-core shell model. By examining the underlying theory of effective operators, we expose the physical foundations for the alternative pathways to convergence. This leads us to propose a revised strategy for evaluating effective interactions for A-body calculations in restricted model spaces. We suggest that this strategy is particularly useful for applications to nuclear processes in which states of both parities are used simultaneously, such as for transition rates. We demonstrate the utility of our strategy with large-scale calculations in light nuclei.

  16. Compact stars with a quark core within the Nambu-Jona-Lasinio (NJL) model

    SciTech Connect

    Lenzi, C. H.; Schneider, A. S.; Providencia, C.; Marinho, R. M. Jr.

    2010-07-15

    An ultraviolet cutoff dependent on the chemical potential as proposed by Casalbuoni et al. is used in the SU(3) Nambu-Jona-Lasinio model. The model is applied to the description of stellar quark matter and compact stars. It is shown that with a new cutoff parametrization it is possible to obtain stable hybrid stars with a quark core. A larger cutoff at finite densities leads to a partial chiral symmetry restoration of quark s at lower densities. A direct consequence is the onset of the s quark in stellar matter at lower densities and a softening of the equation of state.

  17. N Reactor core heatup sensitivity study for the 32-inch unit cell model

    SciTech Connect

    Martin, F.; Zimmerman, B.; Heard, F.

    1988-02-01

    A number of N Reactor core heatup studies have been performed using the TRUMP-BD computer code. These studies were performed to address questions concerning the dependency of results on potential variations in the material properties and/or modeling assumptions. This report described and documents a series of 31 TRUMP-BD runs that were performed to determine the sensitivity of calculated inner-fuel temperatures to a variety of TRUMP input parameters and also to a change in the node density in a high-temperature-gradient region. The results of this study are based on the 32-in. model. 18 refs., 17 figs., 2 tab.

  18. Fuel performance models for high-temperature gas-cooled reactor core design

    SciTech Connect

    Stansfield, O.M.; Simon, W.A.; Baxter, A.M.

    1983-09-01

    Mechanistic fuel performance models are used in high-temperature gas-cooled reactor core design and licensing to predict failure and fission product release. Fuel particles manufactured with defective or missing SiC, IPyC, or fuel dispersion in the buffer fail at a level of less than 5 x 10/sup -4/ fraction. These failed particles primarily release metallic fission products because the OPyC remains intact on 90% of the particles and retains gaseous isotopes. The predicted failure of particles using performance models appears to be conservative relative to operating reactor experience.

  19. Laminated core modeling under rotational excitations including eddy currents and hysteresis

    SciTech Connect

    Bottauscio, Oriano; Chiampi, Mario

    2001-06-01

    This article presents a numerical model for the electromagnetic analysis of hysteretic-laminated cores under rotational excitations. The computational approach is based on the finite element solution of a two-dimensional field magnetic problem in a homogeneous structure, where the skin effect due to macroscopic eddy currents in the lamination depth is included through a generalized dynamic constitutive relationship between B and H. The proposed model, after validation, is applied to the analysis of a laminated disk, evaluating the effects of the supply frequency and distorsion on power losses and B{endash}H loops. {copyright} 2001 American Institute of Physics.

  20. A mean spherical model for soft potentials: The hard core revealed as a perturbation

    NASA Technical Reports Server (NTRS)

    Rosenfeld, Y.; Ashcroft, N. W.

    1978-01-01

    The mean spherical approximation for fluids is extended to treat the case of dense systems interacting via soft-potentials. The extension takes the form of a generalized statement concerning the behavior of the direct correlation function c(r) and radial distribution g(r). From a detailed analysis that views the hard core portion of a potential as a perturbation on the whole, a specific model is proposed which possesses analytic solutions for both Coulomb and Yukawa potentials, in addition to certain other remarkable properties. A variational principle for the model leads to a relatively simple method for obtaining numerical solutions.

  1. NUMERICAL VERIFICATION OF THE RELAP-7 CORE CHANNEL SINGLE-PHASE MODEL

    SciTech Connect

    Haihua Zhao; Ling Zou; Hongbin Zhang; Richard Martineau

    2014-06-01

    The RELAP-7 code is the next generation of nuclear reactor system safety analysis code being developed at the Idaho National Laboratory (INL). All the physics in RELAP-7 are fully coupled and the errors resulted from the traditional operator-splitting approach are eliminated. By using 2nd order methods in both time and space and eliminating operator-splitting errors, the numerical error of RELAP-7 can be minimized. Numerical verification is the process to verify the orders of numerical methods. It is an important part of modern verification and validation process. The core channel component in RELAP-7 is designed to simulate coolant flow as well as the conjugated heat transfer between coolant flow and the fuel rod. A special treatment at fuel centerline to avoid numerical singularity for the cylindrical heat conduction in the continuous finite element mesh is discussed. One steady state test case and one fast power up transient test case are utilized for the verification of the core channel model with single-phase flow. Analytical solution for the fuel pin temperature and figures of merit such as peak clad temperature and peak fuel temperature are used to define numerical errors. These cases prove that the mass and energy are well conserved and 2nd order convergence rates for both time and space are achieved in the core channel model.

  2. Advanced Test Reactor Core Modeling Update Project Annual Report for Fiscal Year 2010

    SciTech Connect

    Rahmat Aryaeinejad; Douglas S. Crawford; Mark D. DeHart; George W. Griffith; D. Scott Lucas; Joseph W. Nielsen; David W. Nigg; James R. Parry; Jorge Navarro

    2010-09-01

    Legacy computational reactor physics software tools and protocols currently used for support of Advanced Test Reactor (ATR) core fuel management and safety assurance and, to some extent, experiment management are obsolete, inconsistent with the state of modern nuclear engineering practice, and are becoming increasingly difficult to properly verify and validate (V&V). Furthermore, the legacy staff knowledge required for application of these tools and protocols from the 1960s and 1970s is rapidly being lost due to staff turnover and retirements. In 2009 the Idaho National Laboratory (INL) initiated a focused effort to address this situation through the introduction of modern high-fidelity computational software and protocols, with appropriate V&V, within the next 3-4 years via the ATR Core Modeling and Simulation and V&V Update (or “Core Modeling Update”) Project. This aggressive computational and experimental campaign will have a broad strategic impact on the operation of the ATR, both in terms of improved computational efficiency and accuracy for support of ongoing DOE programs as well as in terms of national and international recognition of the ATR National Scientific User Facility (NSUF).

  3. Long-term reactive transport modelling of Berea and chalk core flood experiment

    NASA Astrophysics Data System (ADS)

    Souza, A. V.; Godoy, J.; Tonietto, G.

    2013-12-01

    Carbon sequestration in geological structures establishes a long-term chemical system between the dissolved gas, fluids and rocks from the injection site. Thus, the time scale used to assess the progress of chemical reactions is normally between tens and hundreds of years. Geochemical modeling is used in a variety of fields, including environmental protection and remediation, the petroleum industry, and economic geology and it is one of the best alternatives to evaluate the reactions with geochemical data possible injection sites. In this work we used data presented in a recent article (SPE165500) in different scenarios injection with three scales 50, 100, 250 and 1000 years. The experimental data used were from core flood experiment Berea and chalk in a condition similar to those found in the reservoirs of the North Sea. (340 bar and 130 C). The approach used to the lack of appropriate kinetic parameter in reservoir conditions, was the use of experimental data collected in two different conditions (340 bar and 130 C) and (2 Bar at room temperature) after the rocky core. The numerical simulations carried out using the same conditions with two different geochemical softwares PHREEQC and TOUGHREACTS. The results provide a detailed understanding of the system resulting rock-fluid-CO2 in the medium and long term. However, the accuracy of the models is strongly dependent on the mineral primary and secondary cores found in rocks.

  4. A Journey in Standard Development: The Core Manufacturing Simulation Data (CMSD) Information Model

    PubMed Central

    Lee, Yung-Tsun Tina

    2015-01-01

    This report documents a journey “from research to an approved standard” of a NIST-led standard development activity. That standard, Core Manufacturing Simulation Data (CMSD) information model, provides neutral structures for the efficient exchange of manufacturing data in a simulation environment. The model was standardized under the auspices of the international Simulation Interoperability Standards Organization (SISO). NIST started the research in 2001 and initiated the standardization effort in 2004. The CMSD standard was published in two SISO Products. In the first Product, the information model was defined in the Unified Modeling Language (UML) and published in 2010 as SISO-STD-008-2010. In the second Product, the information model was defined in Extensible Markup Language (XML) and published in 2013 as SISO-STD-008-01-2012. Both SISO-STD-008-2010 and SISO-STD-008-01-2012 are intended to be used together. PMID:26958450

  5. A Journey in Standard Development: The Core Manufacturing Simulation Data (CMSD) Information Model.

    PubMed

    Lee, Yung-Tsun Tina

    2015-01-01

    This report documents a journey "from research to an approved standard" of a NIST-led standard development activity. That standard, Core Manufacturing Simulation Data (CMSD) information model, provides neutral structures for the efficient exchange of manufacturing data in a simulation environment. The model was standardized under the auspices of the international Simulation Interoperability Standards Organization (SISO). NIST started the research in 2001 and initiated the standardization effort in 2004. The CMSD standard was published in two SISO Products. In the first Product, the information model was defined in the Unified Modeling Language (UML) and published in 2010 as SISO-STD-008-2010. In the second Product, the information model was defined in Extensible Markup Language (XML) and published in 2013 as SISO-STD-008-01-2012. Both SISO-STD-008-2010 and SISO-STD-008-01-2012 are intended to be used together. PMID:26958450

  6. Plasticity of single-atom Pb junctions

    NASA Astrophysics Data System (ADS)

    Müller, M.; Salgado, C.; Néel, N.; Palacios, J. J.; Kröger, J.

    2016-06-01

    A low-temperature scanning tunneling microscope was used to fabricate atomic contacts on Pb(111). Conductance characteristics of the junctions were simultaneously recorded with forming and subsequent breaking of the contacts. A pronounced hysteresis effect in conductance traces was observed from junctions comprising the clean Pb(111) surface. The hysteretic behavior was less profound in contacts to single Pb atoms adsorbed to Pb(111). Density-functional calculations reproduced the experimental results by performing a full ab initio modeling of plastic junction deformations. A comprehensive description of the experimental findings was achieved by considering different atomic tip apex geometries.

  7. Numerical modelling of dense material distribution on the core-mantle boundaries in terrestrial planets

    NASA Astrophysics Data System (ADS)

    Płonka, A.; Czechowski, L.

    2013-09-01

    Our main interest lies within the properties of the lower thermal boundary layer of the mantle convection. We assume whole-mantle convection for smaller planetary bodies like Westa, for the Earth our model corresponds to two-layered convection with only the strongest currents reaching the lowermost mantle. For certain densities of the accumulates on the core we calculate their distribution, stream function and temperature. The Rayleigh number is kept relatively low. We search over accumulate densities reaching from 1 to 2.5 of the mantle density - in this way we want to determine for which densities the accumulates start to form distinct domes on the core-mantle boundary. For the Earth, formation of high and sharp domes is visible for high densities after 700 million years. Another question, addressing also the problem of the accumulate genesis, is the ratio of radiogenic heat production in the dense material.

  8. Accounting for crustal magnetization in models of the core magnetic field

    NASA Technical Reports Server (NTRS)

    Jackson, Andrew

    1990-01-01

    The problem of determining the magnetic field originating in the earth's core in the presence of remanent and induced magnetization is considered. The effect of remanent magnetization in the crust on satellite measurements of the core magnetic field is investigated. The crust as a zero-mean stationary Gaussian random process is modelled using an idea proposed by Parker (1988). It is shown that the matrix of second-order statistics is proportional to the Gram matrix, which depends only on the inner-products of the appropriate Green's functions, and that at a typical satellite altitude of 400 km the data are correlated out to an angular separation of approximately 15 deg. Accurate and efficient means of calculating the matrix elements are given. It is shown that the variance of measurements of the radial component of a magnetic field due to the crust is expected to be approximately twice that in horizontal components.

  9. Maximizing Multi-core Performance of the Weather Research and Forecast Model over the Hawaiian Islands

    NASA Astrophysics Data System (ADS)

    Roe, K.; Stevens, D.

    2010-09-01

    The Hawaiian Islands consist of dramatic terrain changes over short distances, resulting in a variety of microclimates in close proximity. To handle these challenging conditions, weather models must be run at very fine vertical and horizontal resolutions to produce accurate forecasts. Computational demands require WRF to be executed in parallel on the Maui High Performance Computing Center’s Mana system, a PowerEdge M610 Linux cluster. This machine has 1,152 compute nodes, each with two 2.8 GHz quad-core Intel® Nehalem processors and 24 GB RAM. Realizing maximum performance on Mana relied on the determination of an optimal number of cores to use per socket, the efficiency of an MPI only implementation, an optimal set of parameters for adaptive time stepping, a way to meet the strict stability requirements necessary for Hawaii, effective choices for processor and memory affinity, and parallel automation techniques for producing forecast imagery.

  10. Wind Tunnel Magnetic Suspension and Balance Systems With Transversely Magnetized Model Cores

    NASA Technical Reports Server (NTRS)

    Britcher, Colin P.

    1998-01-01

    This paper discusses the possibility of using vertically magnetized model cores for wind tunnel Magnetic Suspension and Balance Systems (MSBS) in an effort to resolve the traditional "roll control" problem. A theoretical framework is laid out, based on previous work related to generic technology development efforts at NASA Langley Research Center. The impact of the new roll control scheme on traditional wind tunnel MSBS configurations is addressed, and the possibility of demonstrating the new scheme with an existing electromagnet assembly is explored. The specific system considered is the ex- Massachusetts Institute of Technology (MIT), ex-NASA, 6-inch MSBS currently in the process of recommissioning at Old Dominion University. This system has a sufficiently versatile electromagnet configuration such that straightforward "conversion" to vertically magnetized cores appears possible.

  11. Solution to the inverse problem of estimating gap-junctional and inhibitory conductance in inferior olive neurons from spike trains by network model simulation.

    PubMed

    Onizuka, Miho; Hoang, Huu; Kawato, Mitsuo; Tokuda, Isao T; Schweighofer, Nicolas; Katori, Yuichi; Aihara, Kazuyuki; Lang, Eric J; Toyama, Keisuke

    2013-11-01

    The inferior olive (IO) possesses synaptic glomeruli, which contain dendritic spines from neighboring neurons and presynaptic terminals, many of which are inhibitory and GABAergic. Gap junctions between the spines electrically couple neighboring neurons whereas the GABAergic synaptic terminals are thought to act to decrease the effectiveness of this coupling. Thus, the glomeruli are thought to be important for determining the oscillatory and synchronized activity displayed by IO neurons. Indeed, the tendency to display such activity patterns is enhanced or reduced by the local administration of the GABA-A receptor blocker picrotoxin (PIX) or the gap junction blocker carbenoxolone (CBX), respectively. We studied the functional roles of the glomeruli by solving the inverse problem of estimating the inhibitory (gi) and gap-junctional conductance (gc) using an IO network model. This model was built upon a prior IO network model, in which the individual neurons consisted of soma and dendritic compartments, by adding a glomerular compartment comprising electrically coupled spines that received inhibitory synapses. The model was used in the forward mode to simulate spike data under PIX and CBX conditions for comparison with experimental data consisting of multi-electrode recordings of complex spikes from arrays of Purkinje cells (complex spikes are generated in a one-to-one manner by IO spikes and thus can substitute for directly measuring IO spike activity). The spatiotemporal firing dynamics of the experimental and simulation spike data were evaluated as feature vectors, including firing rates, local variation, auto-correlogram, cross-correlogram, and minimal distance, and were contracted onto two-dimensional principal component analysis (PCA) space. gc and gi were determined as the solution to the inverse problem such that the simulation and experimental spike data were closely matched in the PCA space. The goodness of the match was confirmed by an analysis of variance

  12. TRACE/PARCS Core Modeling of a BWR/5 for Accident Analysis of ATWS Events

    SciTech Connect

    Cuadra A.; Baek J.; Cheng, L.; Aronson, A.; Diamond, D.; Yarsky, P.

    2013-11-10

    The TRACE/PARCS computational package [1, 2] isdesigned to be applicable to the analysis of light water reactor operational transients and accidents where the coupling between the neutron kinetics (PARCS) and the thermal-hydraulics and thermal-mechanics (TRACE) is important. TRACE/PARCS has been assessed for itsapplicability to anticipated transients without scram(ATWS) [3]. The challenge, addressed in this study, is to develop a sufficiently rigorous input model that would be acceptable for use in ATWS analysis. Two types of ATWS events were of interest, a turbine trip and a closure of main steam isolation valves (MSIVs). In the first type, initiated by turbine trip, the concern is that the core will become unstable and large power oscillations will occur. In the second type,initiated by MSIV closure,, the concern is the amount of energy being placed into containment and the resulting emergency depressurization. Two separate TRACE/PARCS models of a BWR/5 were developed to analyze these ATWS events at MELLLA+ (maximum extended load line limit plus)operating conditions. One model [4] was used for analysis of ATWS events leading to instability (ATWS-I);the other [5] for ATWS events leading to emergency depressurization (ATWS-ED). Both models included a large portion of the nuclear steam supply system and controls, and a detailed core model, presented henceforth.

  13. A Numerical Model for Magnetohydrodynamic Waves in a Stably-Stratified Layer in Earth's Core

    NASA Astrophysics Data System (ADS)

    Knezek, N. R.; Buffett, B. A.

    2015-12-01

    A numerical model for magnetohydrodynamic waves in a thin shell is developed and applied to study the effect of a stably-stratified layer in Earth's core on geomagnetic secular variation. The model employs a spherical coordinate system with finite differences in r and θ and Fourier decomposition in Φ. The model is linearized assuming a background azimuthal velocity field UΦ(r,θ) and an arbitrary background magnetic field Br,θ,Φ(r,θ). The Boussinesq approximation is employed and the buoyancy forces are prescribed in terms of a spatially variable Brunt-Vaisala frequency N(r,θ). The equations are cast into a sparse generalized eigenvalue problem by assuming solutions of the form uj,bj,p=CjeimΦ+λt and eigenmodes are found. Good agreement is obtained with previous approximate analytical solutions for zonal (m=0) magnetic-Archimedes-Coriolis (MAC) waves (e.g. Braginsky, 1993), global magnetic-Rossby (m>0) waves (e.g. Braginsky, 1998), and equatorially-trapped magnetic-Rossby waves (e.g. Bergman, 1993). This model is employed to study the origins of the fast equatorial waves observed by Chulliat et al. (2015) in recent high-resolution magnetic field models to constrain plausible properties of the stably-stratified layer and core-surface magnetic field.

  14. Wisconsin Model Early Learning Standards Alignment with Wisconsin Common Core State Standards for English Language Arts and Mathematics

    ERIC Educational Resources Information Center

    Wisconsin Department of Public Instruction, 2011

    2011-01-01

    Wisconsin's adoption of the Common Core State Standards provides an excellent opportunity for Wisconsin school districts and communities to define expectations from birth through preparation for college and work. By aligning the existing Wisconsin Model Early Learning Standards with the Wisconsin Common Core State Standards, expectations can be…

  15. Shape and wobbling wave excitations in Josephson junctions: Exact solutions of the (2+1)-dimensional sine-Gordon model

    SciTech Connect

    Gulevich, D. R.; Savel'ev, Sergey; Kusmartsev, F. V.; Yampol'skii, V. A.; Nori, Franco

    2009-09-01

    We predict a class of excitations propagating along a Josephson vortex in two-dimensional Josephson junctions. These excitations are associated with the distortion of a Josephson vortex line of an arbitrary profile. We derive a universal analytical expression for the energy of arbitrary-shape excitations, investigate their influence on the dynamics of a vortex line, and discuss conditions where such excitations can be created. Finally, we show that such excitations play the role of a clock for a relativistically-moving Josephson vortex and suggest an experiment to measure a time-dilation effect analogous to that in special relativity. The position of the shape excitation on a Josephson vortex acts like a 'minute hand' showing the time in the rest frame associated with the vortex. Remarkably, at some conditions, the shape wave can carry negative energy: a vortex with the shape excitation can have less energy than the same vortex without it.

  16. Towards self-consistent modelling of the Martian dichotomy: Coupled models of simultaneous core and crust formation

    NASA Astrophysics Data System (ADS)

    Golabek, Gregor; Keller, Tobias; Gerya, Taras; Zhu, Guizhi; Tackley, Paul

    2010-05-01

    One of the most striking surface features on Mars is the crustal dichotomy. It is the oldest geological feature on Mars and was formed more than 4.1 Ga ago by either exogenic or endogenic processes (e.g. Keller and Tackley, 2009). In order to find an internal origin of the crustal dichotomy, located within a maximum of 400 Ma of planetary differentiation, the thermal state of the planet resulting from core formation needs to be considered. Additionally, it was suggested that a primordial crust with up to 45 km thickness can be formed already during the Martian core formation (Norman, 1999). We suggest that the sinking of iron diapirs delivered by pre-differentiated impactors induced impact- and shear heating-related temperature anomalies in the mantle that fostered the formation of early Martian crust. Thus, the crustal thickness distribution would largely be a result of planetary core formation, late impact history and the onset of mantle convection. In this study, we examine parameter sets that will likely cause hemispherical asymmetry in both core formation and onset of mantle convection. To test this hypothesis we use numerical models to simulate the formation of the Martian iron core and the resulting mantle convection pattern, while peridotite melting is enabled to track melting caused by shear and radioactive heating.
We perform 2D simulations using the spherical-Cartesian code I2ELVIS (Gerya and Yuen, 2007) for planetary accretion and the spherical code STAGYY (Tackley, 2008) for the consequent onset of mantle convection. We apply a temperature-, stress- and melt-fraction dependent viscoplastic rheology inside a Mars-sized planet. Radioactive and shear heating as well as consumption of latent heat by silicate melting are taken into account. The depth of neutral buoyancy of silicate melt with respect to solid silicates is determined by the difference in compressibility of the liquid and solid phase. To self-consistently simulate the silicate phase changes

  17. Three-junction solar cell

    DOEpatents

    Ludowise, Michael J.

    1986-01-01

    A photovoltaic solar cell is formed in a monolithic semiconductor. The cell contains three junctions. In sequence from the light-entering face, the junctions have a high, a medium, and a low energy gap. The lower junctions are connected in series by one or more metallic members connecting the top of the lower junction through apertures to the bottom of the middle junction. The upper junction is connected in voltage opposition to the lower and middle junctions by second metallic electrodes deposited in holes 60 through the upper junction. The second electrodes are connected to an external terminal.

  18. A Low-Cost Simulation Model for R-Wave Synchronized Atrial Pacing in Pediatric Patients with Postoperative Junctional Ectopic Tachycardia

    PubMed Central

    Michel, Miriam; Egender, Friedemann; Heßling, Vera; Dähnert, Ingo; Gebauer, Roman

    2016-01-01

    Background Postoperative junctional ectopic tachycardia (JET) occurs frequently after pediatric cardiac surgery. R-wave synchronized atrial (AVT) pacing is used to re-establish atrioventricular synchrony. AVT pacing is complex, with technical pitfalls. We sought to establish and to test a low-cost simulation model suitable for training and analysis in AVT pacing. Methods A simulation model was developed based on a JET simulator, a simulation doll, a cardiac monitor, and a pacemaker. A computer program simulated electrocardiograms. Ten experienced pediatric cardiologists tested the model. Their performance was analyzed using a testing protocol with 10 working steps. Results Four testers found the simulation model realistic; 6 found it very realistic. Nine claimed that the trial had improved their skills. All testers considered the model useful in teaching AVT pacing. The simulation test identified 5 working steps in which major mistakes in performance test may impede safe and effective AVT pacing and thus permitted specific training. The components of the model (exclusive monitor and pacemaker) cost less than $50. Assembly and training-session expenses were trivial. Conclusions A realistic, low-cost simulation model of AVT pacing is described. The model is suitable for teaching and analyzing AVT pacing technique. PMID:26943363

  19. Modeling the Formation of Giant Planet Cores. I. Evaluating Key Processes

    NASA Astrophysics Data System (ADS)

    Levison, Harold F.; Thommes, Edward; Duncan, Martin J.

    2010-04-01

    One of the most challenging problems we face in our understanding of planet formation is how Jupiter and Saturn could have formed before the solar nebula dispersed. The most popular model of giant planet formation is the so-called core accretion model. In this model a large planetary embryo formed first, mainly by two-body accretion. This is then followed by a period of inflow of nebular gas directly onto the growing planet. The core accretion model has an Achilles heel, namely the very first step. We have undertaken the most comprehensive study of this process to date. In this study, we numerically integrate the orbits of a number of planetary embryos embedded in a swarm of planetesimals. In these experiments, we have included a large number of physical processes that might enhance accretion. In particular, we have included (1) aerodynamic gas drag, (2) collisional damping between planetesimals, (3) enhanced embryo cross sections due to their atmospheres, (4) planetesimal fragmentation, and (5) planetesimal-driven migration. We find that the gravitational interaction between the embryos and the planetesimals leads to the wholesale redistribution of material—regions are cleared of material and gaps open near the embryos. Indeed, in 90% of our simulations without fragmentation, the region near those embryos is cleared of planetesimals before much growth can occur. Thus, the widely used assumption that the surface density distribution of planetesimals is smooth can lead to misleading results. In the remaining 10% of our simulations, the embryos undergo a burst of outward migration that significantly increases growth. On timescales of ~105 years, the outer embryo can migrate ~6 AU and grow to roughly 30 M ⊕. This represents a largely unexplored mode of core formation. We also find that the inclusion of planetesimal fragmentation tends to inhibit growth except for a narrow range of fragment migration rates.

  20. A THREE-PHASE CHEMICAL MODEL OF HOT CORES: THE FORMATION OF GLYCINE

    SciTech Connect

    Garrod, Robin T.

    2013-03-01

    A new chemical model is presented that simulates fully coupled gas-phase, grain-surface, and bulk-ice chemistry in hot cores. Glycine (NH{sub 2}CH{sub 2}COOH), the simplest amino acid, and related molecules such as glycinal, propionic acid, and propanal, are included in the chemical network. Glycine is found to form in moderate abundance within and upon dust-grain ices via three radical-addition mechanisms, with no single mechanism strongly dominant. Glycine production in the ice occurs over temperatures {approx}40-120 K. Peak gas-phase glycine fractional abundances lie in the range 8 Multiplication-Sign 10{sup -11}-8 Multiplication-Sign 10{sup -9}, occurring at {approx}200 K, the evaporation temperature of glycine. A gas-phase mechanism for glycine production is tested and found insignificant, even under optimal conditions. A new spectroscopic radiative-transfer model is used, allowing the translation and comparison of the chemical-model results with observations of specific sources. Comparison with the nearby hot-core source NGC 6334 IRS1 shows excellent agreement with integrated line intensities of observed species, including methyl formate. The results for glycine are consistent with the current lack of a detection of this molecule toward other sources; the high evaporation temperature of glycine renders the emission region extremely compact. Glycine detection with ALMA is predicted to be highly plausible, for bright, nearby sources with narrow emission lines. Photodissociation of water and subsequent hydrogen abstraction from organic molecules by OH, and NH{sub 2}, are crucial to the buildup of complex organic species in the ice. The inclusion of alternative branches within the network of radical-addition reactions appears important to the abundances of hot-core molecules; less favorable branching ratios may remedy the anomalously high abundance of glycolaldehyde predicted by this and previous models.

  1. A Three-phase Chemical Model of Hot Cores: The Formation of Glycine

    NASA Astrophysics Data System (ADS)

    Garrod, Robin T.

    2013-03-01

    A new chemical model is presented that simulates fully coupled gas-phase, grain-surface, and bulk-ice chemistry in hot cores. Glycine (NH2CH2COOH), the simplest amino acid, and related molecules such as glycinal, propionic acid, and propanal, are included in the chemical network. Glycine is found to form in moderate abundance within and upon dust-grain ices via three radical-addition mechanisms, with no single mechanism strongly dominant. Glycine production in the ice occurs over temperatures ~40-120 K. Peak gas-phase glycine fractional abundances lie in the range 8 × 10-11-8 × 10-9, occurring at ~200 K, the evaporation temperature of glycine. A gas-phase mechanism for glycine production is tested and found insignificant, even under optimal conditions. A new spectroscopic radiative-transfer model is used, allowing the translation and comparison of the chemical-model results with observations of specific sources. Comparison with the nearby hot-core source NGC 6334 IRS1 shows excellent agreement with integrated line intensities of observed species, including methyl formate. The results for glycine are consistent with the current lack of a detection of this molecule toward other sources; the high evaporation temperature of glycine renders the emission region extremely compact. Glycine detection with ALMA is predicted to be highly plausible, for bright, nearby sources with narrow emission lines. Photodissociation of water and subsequent hydrogen abstraction from organic molecules by OH, and NH2, are crucial to the buildup of complex organic species in the ice. The inclusion of alternative branches within the network of radical-addition reactions appears important to the abundances of hot-core molecules; less favorable branching ratios may remedy the anomalously high abundance of glycolaldehyde predicted by this and previous models.

  2. MODELING THE FORMATION OF GIANT PLANET CORES. I. EVALUATING KEY PROCESSES

    SciTech Connect

    Levison, Harold F.; Thommes, Edward; Duncan, Martin J.

    2010-04-15

    One of the most challenging problems we face in our understanding of planet formation is how Jupiter and Saturn could have formed before the solar nebula dispersed. The most popular model of giant planet formation is the so-called core accretion model. In this model a large planetary embryo formed first, mainly by two-body accretion. This is then followed by a period of inflow of nebular gas directly onto the growing planet. The core accretion model has an Achilles heel, namely the very first step. We have undertaken the most comprehensive study of this process to date. In this study, we numerically integrate the orbits of a number of planetary embryos embedded in a swarm of planetesimals. In these experiments, we have included a large number of physical processes that might enhance accretion. In particular, we have included (1) aerodynamic gas drag, (2) collisional damping between planetesimals, (3) enhanced embryo cross sections due to their atmospheres, (4) planetesimal fragmentation, and (5) planetesimal-driven migration. We find that the gravitational interaction between the embryos and the planetesimals leads to the wholesale redistribution of material-regions are cleared of material and gaps open near the embryos. Indeed, in 90% of our simulations without fragmentation, the region near those embryos is cleared of planetesimals before much growth can occur. Thus, the widely used assumption that the surface density distribution of planetesimals is smooth can lead to misleading results. In the remaining 10% of our simulations, the embryos undergo a burst of outward migration that significantly increases growth. On timescales of {approx}10{sup 5} years, the outer embryo can migrate {approx}6 AU and grow to roughly 30 M {sub +}. This represents a largely unexplored mode of core formation. We also find that the inclusion of planetesimal fragmentation tends to inhibit growth except for a narrow range of fragment migration rates.

  3. Modeling of BWR core meltdown accidents - for application in the MELRPI. MOD2 computer code

    SciTech Connect

    Koh, B R; Kim, S H; Taleyarkhan, R P; Podowski, M Z; Lahey, Jr, R T

    1985-04-01

    This report summarizes improvements and modifications made in the MELRPI computer code. A major difference between this new, updated version of the code, called MELRPI.MOD2, and the one reported previously, concerns the inclusion of a model for the BWR emergency core cooling systems (ECCS). This model and its computer implementation, the ECCRPI subroutine, account for various emergency injection modes, for both intact and rubblized geometries. Other changes to MELRPI deal with an improved model for canister wall oxidation, rubble bed modeling, and numerical integration of system equations. A complete documentation of the entire MELRPI.MOD2 code is also given, including an input guide, list of subroutines, sample input/output and program listing.

  4. Constraints on geomagnetic secular variation modeling from electromagnetism and fluid dynamics of the Earth's core

    NASA Technical Reports Server (NTRS)

    Benton, E. R.

    1986-01-01

    A spherical harmonic representation of the geomagnetic field and its secular variation for epoch 1980, designated GSFC(9/84), is derived and evaluated. At three epochs (1977.5, 1980.0, 1982.5) this model incorporates conservation of magnetic flux through five selected patches of area on the core/mantle boundary bounded by the zero contours of vertical magnetic field. These fifteen nonlinear constraints are included like data in an iterative least squares parameter estimation procedure that starts with the recently derived unconstrained field model GSFC (12/83). Convergence is approached within three iterations. The constrained model is evaluated by comparing its predictive capability outside the time span of its data, in terms of residuals at magnetic observatories, with that for the unconstrained model.

  5. Convection- and SASI-driven flows in parametrized models of core-collapse supernova explosions

    NASA Astrophysics Data System (ADS)

    Endeve, E.; Cardall, C. Y.; Budiardja, R. D.; Mezzacappa, A.

    2016-02-01

    We present initial results from three-dimensional simulations of parametrized core-collapse supernova (CCSN) explosions obtained with our astrophysical simulation code General Astrophysical Simulation System (GenASIS). We are interested in nonlinear flows resulting from neutrino-driven convection and the standing accretion shock instability (SASI) in the CCSN environment prior to and during the explosion. By varying parameters in our model that control neutrino heating and shock dissociation, our simulations result in convection-dominated and SASI-dominated evolution. We describe this initial set of simulation results in some detail. To characterize the turbulent flows in the simulations, we compute and compare velocity power spectra from convection-dominated and SASI-dominated (both non-exploding and exploding) models. When compared to SASI-dominated models, convection-dominated models exhibit significantly more power on small spatial scales.

  6. A two-component model for fitting light curves of core-collapse supernovae

    NASA Astrophysics Data System (ADS)

    Nagy, A. P.; Vinkó, J.

    2016-05-01

    We present an improved version of a light curve model that is able to estimate the physical properties of different types of core-collapse supernovae that have double-peaked light curves and do so in a quick and efficient way. The model is based on a two-component configuration consisting of a dense inner region and an extended low-mass envelope. Using this configuration, we estimate the initial parameters of the progenitor by fitting the shape of the quasi-bolometric light curves of 10 SNe, including Type IIP and IIb events, with model light curves. In each case we compare the fitting results with available hydrodynamic calculations and also match the derived expansion velocities with the observed ones. Furthermore, we compare our calculations with hydrodynamic models derived by the SNEC code and examine the uncertainties of the estimated physical parameters caused by the assumption of constant opacity and the inaccurate knowledge of the moment of explosion.

  7. An Exact Solution to the Central Core Model of the Renal Medulla

    NASA Astrophysics Data System (ADS)

    Mickens, Ronald E.

    1998-11-01

    The central core model of the renal medulla provides a mathematical representation of the urine concentration mechanism. The model consists of eight coupled, nonlinear ODE's subject to certain initial and boundary conditions. Many investigators have studied the properties of the solutions to these equations, however no general analytic solution is known to exist. Thus, special exact solutions assume a position of significance by providing a basis for insight into the understanding of more realistic models used to analyze actual data. We calculate an exact solution for the case in which the water permeabilities are zero and a particular, but realistic, functional form is used for the metabolic pump. A detailed discussion will be given for the results obtained on the four cencentration and four flux functions that define the model. If invited to do so, the author is willing to expand the talk for the above abstract to twenty minutes.

  8. The Dependence of ITCZ Structure on Model Resolution and Dynamical Core in Aquaplanet Simulations

    SciTech Connect

    Landu, Kiranmayi; Leung, Lai-Yung R.; Hagos, Samson M.; Vinoj, V.; Rauscher, Sara; Ringler, Todd; Taylor, Mark

    2014-03-15

    Aqua-planet simulations using the Community Atmosphere Model version 4 (CAM4) with the Model for Prediction Across Scales Atmosphere (MPAS-A) and Higher Order Method Modeling Environment (HOMME) dynamical cores and zonally symmetric sea surface temperature (SST) structure are studied to understand the dependence of the inter-tropical convergence zone (ITCZ) structure on resolution and dynamical core. While all resolutions in HOMME and the low-resolution MPAS-A simulations give a single equatorial peak in zonal mean precipitation, the high-resolution MPAS-A simulations give a double ITCZ with precipitation peaking around 2° to 3° on either side of the equator. This study reveals that the structure of ITCZ is dependent on the feedbacks among convection and large-scale circulation and surface heat fluxes. We show that, by increasing convective available potential energy (CAPE) off the equator, the simulations with higher wind induced surface heat fluxes result in double ITCZ structure. This in turn leads to stronger convection and positive feedback with the large-scale circulation. We further show that the dominance of anti-symmetric waves in a model is not enough to cause double ITCZ, and the lateral extent of equatorial waves does not play an important role in determining the width of the ITCZ but rather the latter may influence the former.

  9. Advanced Test Reactor Core Modeling Update Project Annual Report for Fiscal Year 2011

    SciTech Connect

    David W. Nigg; Devin A. Steuhm

    2011-09-01

    Legacy computational reactor physics software tools and protocols currently used for support of Advanced Test Reactor (ATR) core fuel management and safety assurance and, to some extent, experiment management are obsolete, inconsistent with the state of modern nuclear engineering practice, and are becoming increasingly difficult to properly verify and validate (V&V). Furthermore, the legacy staff knowledge required for application of these tools and protocols from the 1960s and 1970s is rapidly being lost due to staff turnover and retirements. In 2009 the Idaho National Laboratory (INL) initiated a focused effort to address this situation through the introduction of modern high-fidelity computational software and protocols, with appropriate V&V, within the next 3-4 years via the ATR Core Modeling and Simulation and V&V Update (or 'Core Modeling Update') Project. This aggressive computational and experimental campaign will have a broad strategic impact on the operation of the ATR, both in terms of improved computational efficiency and accuracy for support of ongoing DOE programs as well as in terms of national and international recognition of the ATR National Scientific User Facility (NSUF). The ATR Core Modeling Update Project, targeted for full implementation in phase with the anticipated ATR Core Internals Changeout (CIC) in the 2014 time frame, began during the last quarter of Fiscal Year 2009, and has just completed its first full year. Key accomplishments so far have encompassed both computational as well as experimental work. A new suite of stochastic and deterministic transport theory based reactor physics codes and their supporting nuclear data libraries (SCALE, KENO-6, HELIOS, NEWT, and ATTILA) have been installed at the INL under various permanent sitewide license agreements and corresponding baseline models of the ATR and ATRC are now operational, demonstrating the basic feasibility of these code packages for their intended purpose. Furthermore, a

  10. Gas and grain chemical composition in cold cores as predicted by the Nautilus 3-phase model

    NASA Astrophysics Data System (ADS)

    Ruaud, Maxime; Wakelam, Valentine; Hersant, Franck

    2016-04-01

    We present an extended version of the 2-phase gas-grain code NAUTILUS to the 3-phase modelling of gas and grain chemistry of cold cores. In this model, both the mantle and the surface are considered as chemically active. We also take into account the competition among reaction, diffusion and evaporation. The model predictions are confronted to ice observations in the envelope of low-mass and massive young stellar objects as well as toward background stars. Modelled gas-phase abundances are compared to species observed toward TMC-1 (CP) and L134N dark clouds. We find that our model successfully reproduces the observed ice species. It is found that the reaction-diffusion competition strongly enhances reactions with barriers and more specifically reactions with H2, which is abundant on grains. This finding highlights the importance to have a good approach to determine the abundance of H2 on grains. Consequently, it is found that the major N-bearing species on grains go from NH3 to N2 and HCN when the reaction-diffusion competition is accounted. In the gas-phase and before few 105 yrs, we find that the 3-phase model does not have a strong impact on the observed species compared to the 2-phase model. After this time, the computed abundances dramatically decrease due to the strong accretion on dust, which is not counterbalanced by the desorption less efficient than in the 2-phase model. This strongly constrains the chemical-age of cold cores to be of the order of few 105 yrs.

  11. Parallelization of the Ensemble Empirical Model Decomposition (PEEMD) Method on Multi- and Many-core Processors

    NASA Astrophysics Data System (ADS)

    Cheung, S.; Shen, B.; Li, J. F.; Mehrotra, P.

    2013-12-01

    Cheung, S.1, B.-W. Shen2, P. Mehrotra1 , J.-L. F. Li3 1 NASA Ames Research Center, 2 UMCP/ESSIC, 3CalTech/JPL The trend in high performance computing systems is towards clusters of multi-core nodes; from an 8 cores/node Intel Xeon Harpertown processor in 2008 to the latest Intel Xeon Ivy Bridge processor with 24 cores/node. In addition hardware vendors are developing many core coprocessors, such as NVIDIA's General Purpose Graphics Processing Unit (GPGPU) and Intel's Xeon Phi, in order to get around the constraints of power and frequency. The hybrid nature of such systems presents a major challenge for software developers, in achieving the desired performance. Applications need to be constructed with multiple levels of parallelization along with hybrid communication regimes in order to exploit the power of such systems. The Ensemble Empirical Model Decomposition (EEMD) method has been applied to signal processing on nonlinear and non-stationary data. Due to the ensemble nature of the algorithm and the geographical decomposition of the problem, we have developed a parallel version of the EEMD method with 4-level parallelization, from the grid decomposition level, to time-series level and to the ensemble level using MPI and OpenMP. The parallel EEMD (PEEMD) is being used to analyze Hurricane Sandy (2012) for better understanding of the multiple scale processes that may have impacted Sandy's movement, intensification and formation. In this presentation, we summarize our experiences with the implementation of the PEEMD focusing on the programmability and usability of different processors and accelerators for multiscale analysis for Hurricane Sandy.

  12. Beyond the pseudo-time-dependent approach: chemical models of dense core precursors

    NASA Astrophysics Data System (ADS)

    Hassel, G. E.; Herbst, E.; Bergin, E. A.

    2010-06-01

    Context. Chemical models of dense cloud cores often utilize the so-called pseudo-time-dependent approximation, in which the physical conditions are held fixed and uniform as the chemistry occurs. In this approximation, the initial abundances chosen, which are totally atomic in nature except for molecular hydrogen, are artificial. A more detailed approach to the chemistry of dense cold cores should include the physical evolution during their early stages of formation. Aims: Our major goal is to investigate the initial synthesis of molecular ices and gas-phase molecules as cold molecular gas begins to form behind a shock in the diffuse interstellar medium. The abundances calculated as the conditions evolve can then be utilized as reasonable initial conditions for a theory of the chemistry of dense cores. Methods: Hydrodynamic shock-wave simulations of the early stages of cold core formation are used to determine the time-dependent physical conditions for a gas-grain chemical network. We follow the cold post-shock molecular evolution of ices and gas-phase molecules as the visual extinction increases with time to AV ≈ 3. (Note that instead of an equal sign, the approximately equal sign should remain.) At higher extinction, self-gravity becomes important. Results: As the newly condensed gas enters its cool post-shock phase, a large amount of CO is produced in the gas. As the CO forms, water ice is produced on grains, while accretion of CO produces CO ice. The production of CO2 ice from CO occurs via several surface mechanisms, while the production of CH4 ice is slowed by gas-phase conversion of C into CO.

  13. An approach to model reactor core nodalization for deterministic safety analysis

    NASA Astrophysics Data System (ADS)

    Salim, Mohd Faiz; Samsudin, Mohd Rafie; Mamat @ Ibrahim, Mohd Rizal; Roslan, Ridha; Sadri, Abd Aziz; Farid, Mohd Fairus Abd

    2016-01-01

    Adopting good nodalization strategy is essential to produce an accurate and high quality input model for Deterministic Safety Analysis (DSA) using System Thermal-Hydraulic (SYS-TH) computer code. The purpose of such analysis is to demonstrate the compliance against regulatory requirements and to verify the behavior of the reactor during normal and accident conditions as it was originally designed. Numerous studies in the past have been devoted to the development of the nodalization strategy for small research reactor (e.g. 250kW) up to the bigger research reactor (e.g. 30MW). As such, this paper aims to discuss the state-of-arts thermal hydraulics channel to be employed in the nodalization for RTP-TRIGA Research Reactor specifically for the reactor core. At present, the required thermal-hydraulic parameters for reactor core, such as core geometrical data (length, coolant flow area, hydraulic diameters, and axial power profile) and material properties (including the UZrH1.6, stainless steel clad, graphite reflector) have been collected, analyzed and consolidated in the Reference Database of RTP using standardized methodology, mainly derived from the available technical documentations. Based on the available information in the database, assumptions made on the nodalization approach and calculations performed will be discussed and presented. The development and identification of the thermal hydraulics channel for the reactor core will be implemented during the SYS-TH calculation using RELAP5-3D® computer code. This activity presented in this paper is part of the development of overall nodalization description for RTP-TRIGA Research Reactor under the IAEA Norwegian Extra-Budgetary Programme (NOKEBP) mentoring project on Expertise Development through the Analysis of Reactor Thermal-Hydraulics for Malaysia, denoted as EARTH-M.

  14. A moist aquaplanet variant of the Held-Suarez test for atmospheric model dynamical cores

    NASA Astrophysics Data System (ADS)

    Thatcher, Diana R.; Jablonowski, Christiane

    2016-04-01

    A moist idealized test case (MITC) for atmospheric model dynamical cores is presented. The MITC is based on the Held-Suarez (HS) test that was developed for dry simulations on "a flat Earth" and replaces the full physical parameterization package with a Newtonian temperature relaxation and Rayleigh damping of the low-level winds. This new variant of the HS test includes moisture and thereby sheds light on the nonlinear dynamics-physics moisture feedbacks without the complexity of full-physics parameterization packages. In particular, it adds simplified moist processes to the HS forcing to model large-scale condensation, boundary-layer mixing, and the exchange of latent and sensible heat between the atmospheric surface and an ocean-covered planet. Using a variety of dynamical cores of the National Center for Atmospheric Research (NCAR)'s Community Atmosphere Model (CAM), this paper demonstrates that the inclusion of the moist idealized physics package leads to climatic states that closely resemble aquaplanet simulations with complex physical parameterizations. This establishes that the MITC approach generates reasonable atmospheric circulations and can be used for a broad range of scientific investigations. This paper provides examples of two application areas. First, the test case reveals the characteristics of the physics-dynamics coupling technique and reproduces coupling issues seen in full-physics simulations. In particular, it is shown that sudden adjustments of the prognostic fields due to moist physics tendencies can trigger undesirable large-scale gravity waves, which can be remedied by a more gradual application of the physical forcing. Second, the moist idealized test case can be used to intercompare dynamical cores. These examples demonstrate the versatility of the MITC approach and suggestions are made for further application areas. The new moist variant of the HS test can be considered a test case of intermediate complexity.

  15. Modelling of Equilibrium Between Mantle and Core: Refractory, Volatile, and Highly Siderophile Elements

    NASA Technical Reports Server (NTRS)

    Righter, K.; Danielson, L.; Pando, K.; Shofner, G.; Lee, C. -T.

    2013-01-01

    Siderophile elements have been used to constrain conditions of core formation and differentiation for the Earth, Mars and other differentiated bodies [1]. Recent models for the Earth have concluded that the mantle and core did not fully equilibrate and the siderophile element contents of the mantle can only be explained under conditions where the oxygen fugacity changes from low to high during accretion and the mantle and core do not fully equilibrate [2,3]. However these conclusions go against several physical and chemical constraints. First, calculations suggest that even with the composition of accreting material changing from reduced to oxidized over time, the fO2 defined by metal-silicate equilibrium does not change substantially, only by approximately 1 logfO2 unit [4]. An increase of more than 2 logfO2 units in mantle oxidation are required in models of [2,3]. Secondly, calculations also show that metallic impacting material will become deformed and sheared during accretion to a large body, such that it becomes emulsified to a fine scale that allows equilibrium at nearly all conditions except for possibly the length scale for giant impacts [5] (contrary to conclusions of [6]). Using new data for D(Mo) metal/silicate at high pressures, together with updated partitioning expressions for many other elements, we will show that metal-silicate equilibrium across a long span of Earth s accretion history may explain the concentrations of many siderophile elements in Earth's mantle. The modeling includes refractory elements Ni, Co, Mo, and W, as well as highly siderophile elements Au, Pd and Pt, and volatile elements Cd, In, Bi, Sb, Ge and As.

  16. A moist aquaplanet variant of the Held–Suarez test for atmospheric model dynamical cores

    SciTech Connect

    Thatcher, Diana R.; Jablonowski, Christiane

    2016-01-01

    A moist idealized test case (MITC) for atmospheric model dynamical cores is presented. The MITC is based on the Held–Suarez (HS) test that was developed for dry simulations on “a flat Earth” and replaces the full physical parameterization package with a Newtonian temperature relaxation and Rayleigh damping of the low-level winds. This new variant of the HS test includes moisture and thereby sheds light on the nonlinear dynamics–physics moisture feedbacks without the complexity of full-physics parameterization packages. In particular, it adds simplified moist processes to the HS forcing to model large-scale condensation, boundary-layer mixing, and the exchange of latent and sensible heat between the atmospheric surface and an ocean-covered planet. Using a variety of dynamical cores of the National Center for Atmospheric Research (NCAR)'s Community Atmosphere Model (CAM), this paper demonstrates that the inclusion of the moist idealized physics package leads to climatic states that closely resemble aquaplanet simulations with complex physical parameterizations. This establishes that the MITC approach generates reasonable atmospheric circulations and can be used for a broad range of scientific investigations. This paper provides examples of two application areas. First, the test case reveals the characteristics of the physics–dynamics coupling technique and reproduces coupling issues seen in full-physics simulations. In particular, it is shown that sudden adjustments of the prognostic fields due to moist physics tendencies can trigger undesirable large-scale gravity waves, which can be remedied by a more gradual application of the physical forcing. Second, the moist idealized test case can be used to intercompare dynamical cores. These examples demonstrate the versatility of the MITC approach and suggestions are made for further application areas. The new moist variant of the HS test can be considered a test case of intermediate complexity.

  17. A moist aquaplanet variant of the Held–Suarez test for atmospheric model dynamical cores

    DOE PAGESBeta

    Thatcher, Diana R.; Jablonowski, Christiane

    2016-04-04

    A moist idealized test case (MITC) for atmospheric model dynamical cores is presented. The MITC is based on the Held–Suarez (HS) test that was developed for dry simulations on “a flat Earth” and replaces the full physical parameterization package with a Newtonian temperature relaxation and Rayleigh damping of the low-level winds. This new variant of the HS test includes moisture and thereby sheds light on the nonlinear dynamics–physics moisture feedbacks without the complexity of full-physics parameterization packages. In particular, it adds simplified moist processes to the HS forcing to model large-scale condensation, boundary-layer mixing, and the exchange of latent and sensible heat betweenmore » the atmospheric surface and an ocean-covered planet. Using a variety of dynamical cores of the National Center for Atmospheric Research (NCAR)'s Community Atmosphere Model (CAM), this paper demonstrates that the inclusion of the moist idealized physics package leads to climatic states that closely resemble aquaplanet simulations with complex physical parameterizations. This establishes that the MITC approach generates reasonable atmospheric circulations and can be used for a broad range of scientific investigations. This paper provides examples of two application areas. First, the test case reveals the characteristics of the physics–dynamics coupling technique and reproduces coupling issues seen in full-physics simulations. In particular, it is shown that sudden adjustments of the prognostic fields due to moist physics tendencies can trigger undesirable large-scale gravity waves, which can be remedied by a more gradual application of the physical forcing. Second, the moist idealized test case can be used to intercompare dynamical cores. These examples demonstrate the versatility of the MITC approach and suggestions are made for further application areas. The new moist variant of the HS test can be considered a test case of intermediate complexity.« less

  18. A moist aquaplanet variant of the Held-Suarez test for atmospheric model dynamical cores

    NASA Astrophysics Data System (ADS)

    Thatcher, D. R.; Jablonowski, C.

    2015-09-01

    A moist idealized test case (MITC) for atmospheric model dynamical cores is presented. The MITC is based on the Held-Suarez (HS) test that was developed for dry simulations on a flat Earth and replaces the full physical parameterization package with a Newtonian temperature relaxation and Rayleigh damping of the low-level winds. This new variant of the HS test includes moisture and thereby sheds light on the non-linear dynamics-physics moisture feedbacks without the complexity of full physics parameterization packages. In particular, it adds simplified moist processes to the HS forcing to model large-scale condensation, boundary layer mixing, and the exchange of latent and sensible heat between the atmospheric surface and an ocean-covered planet. Using a variety of dynamical cores of NCAR's Community Atmosphere Model (CAM), this paper demonstrates that the inclusion of the moist idealized physics package leads to climatic states that closely resemble aquaplanet simulations with complex physical parameterizations. This establishes that the MITC approach generates reasonable atmospheric circulations and can be used for a broad range of scientific investigations. This paper provides examples of two application areas. First, the test case reveals the characteristics of the physics-dynamics coupling technique and reproduces coupling issues seen in full-physics simulations. In particular, it is shown that sudden adjustments of the prognostic fields due to moist physics tendencies can trigger undesirable large-scale gravity waves, which can be remedied by a more gradual application of the physical forcing. Second, the moist idealized test case can be used to intercompare dynamical cores. These examples demonstrate the versatility of the MITC approach and suggestions are made for further application areas. The new moist variant of the HS test can be considered a test case of intermediate complexity.

  19. A moist aquaplanet variant of the Held–Suarez test for atmospheric model dynamical cores

    DOE PAGESBeta

    Thatcher, Diana R.; Jablonowski, Christiane

    2016-04-04

    A moist idealized test case (MITC) for atmospheric model dynamical cores is presented. The MITC is based on the Held–Suarez (HS) test that was developed for dry simulations on “a flat Earth” and replaces the full physical parameterization package with a Newtonian temperature relaxation and Rayleigh damping of the low-level winds. This new variant of the HS test includes moisture and thereby sheds light on the nonlinear dynamics–physics moisture feedbacks without the complexity of full-physics parameterization packages. In particular, it adds simplified moist processes to the HS forcing to model large-scale condensation, boundary-layer mixing, and the exchange of latent and sensible heat betweenmore » the atmospheric surface and an ocean-covered planet. Using a variety of dynamical cores of the National Center for Atmospheric Research (NCAR)'s Community Atmosphere Model (CAM), this paper demonstrates that the inclusion of the moist idealized physics package leads to climatic states that closely resemble aquaplanet simulations with complex physical parameterizations. This establishes that the MITC approach generates reasonable atmospheric circulations and can be used for a broad range of scientific investigations. This paper provides examples of two application areas. First, the test case reveals the characteristics of the physics–dynamics coupling technique and reproduces coupling issues seen in full-physics simulations. In particular, it is shown that sudden adjustments of the prognostic fields due to moist physics tendencies can trigger undesirable large-scale gravity waves, which can be remedied by a more gradual application of the physical forcing. Second, the moist idealized test case can be used to intercompare dynamical cores. These examples demonstrate the versatility of the MITC approach and suggestions are made for further application areas. Furthermore, the new moist variant of the HS test can be considered a test case of intermediate

  20. Long Josepshon Junction in a Resonant Cavity

    NASA Astrophysics Data System (ADS)

    Tornes, Ivan

    2005-03-01

    We present a model for an underdamped long Josephson junction coupled to a single-mode electromagnetic cavity, and carry out numerical calculations using this model in various regimes. The coupling may occur through either the electric or the magnetic field of the cavity mode. When a current is injected into the junction, we find that the time-averaged voltage exhibits self-induced resonant steps due to coupling between the current in the junction and the electric field of the cavity mode. These steps are similar to those observed and calculated in small Josephson junctions. When a soliton is present in the junction (corresponding to a quantum of magnetic flux parallel to the junction plates), the SIRS's disappear if the electric field in the cavity is spatially uniform. If the cavity mode has a spatially varying electric field, there is a strong coupling between the soliton and the cavity mode. This coupling causes the soliton to become phase-locked to the cavity mode, and produces step-like anomalies on the soliton branch of the IV characteristics. If the coupling is strong enough, the frequency of the cavity mode is greatly red-shifted from its uncoupled value. We present simple geometrical arguments and a simple analytical model which account for this behavior. This work was supported by NSF grant DMR04-13395.

  1. Improved models of stellar core collapse and still no explosions: what is missing?

    PubMed

    Buras, R; Rampp, M; Janka, H-Th; Kifonidis, K

    2003-06-20

    Two-dimensional hydrodynamic simulations of stellar core collapse are presented which for the first time were performed by solving the Boltzmann equation for the neutrino transport including a state-of-the-art description of neutrino interactions. Stellar rotation is also taken into account. Although convection develops below the neutrinosphere and in the neutrino-heated region behind the supernova shock, the models do not explode. This suggests missing physics, possibly with respect to the nuclear equation of state and weak interactions in the subnuclear regime. However, it might also indicate a fundamental problem with the neutrino-driven explosion mechanism. PMID:12857181

  2. No-Core Shell Model Calculations in Light Nuclei with Three-Nucleon Forces

    SciTech Connect

    Barrett, B R; Vary, J P; Nogga, A; Navratil, P; Ormand, W E

    2004-01-08

    The ab initio No-Core Shell Model (NCSM) has recently been expanded to include nucleon-nucleon (NN) and three-nucleon (3N) interactions at the three-body cluster level. Here it is used to predict binding energies and spectra of p-shell nuclei based on realistic NN and 3N interactions. It is shown that 3N force (3NF) properties can be studied in these nuclear systems. First results show that interactions based on chiral perturbation theory lead to a realistic description of {sup 6}Li.

  3. Jacobi no-core shell model for p-shell nuclei

    NASA Astrophysics Data System (ADS)

    Liebig, S.; Meißner, U.-G.; Nogga, A.

    2016-04-01

    We introduce an algorithm to obtain coefficients of fractional parentage for light p-shell nuclei. The coefficients enable one to use Jacobi coordinates in no-core shell model calculations separating off the center-of-mass motion. Fully antisymmetrized basis states are given together with recoupling coefficients that allow one to apply two- and three-nucleon operators. As an example, we study the dependence on the harmonic oscillator frequency of 3H, 4He, 6He, 6Li and 7Li and extract their binding and excitation energies. The coefficients will be made openly accessible as HDF5 data files.

  4. No-Core Shell Model for 48-Ca, 48-Sc and 48-Ti

    SciTech Connect

    Popescu, S; Stoica, S; Vary, J P; Navratil, P

    2004-10-26

    The authors report the first no-core shell model results for {sup 48}Ca, {sup 48}Sc and {sup 48}Ti with derived and modified two-body Hamiltonians. We use an oscillator basis with a limited {bar h}{Omega} range around 40/A{sup 1/3} = 11 MeV and a limited model space up to 1 {bar h}{Omega}. No single-particle energies are used. They find that the charge dependence of the bulk binding energy of eight A = 48 nuclei is reasonably described with an effective Hamiltonian derived from the CD-Bonn interaction while there is an overall underbinding by about 0.4 MeV/nucleon. However, resulting spectra exhibit deficiencies that are anticipated due to: (1) basis space limitations and/or the absence of effective many-body interactions; and, (2) the absence of genuine three-nucleon interactions. They introduce phenomenological modifications to obtain fits to total binding and low-lying spectra. The resulting no-core shell model opens a path for applications to experiments such as the double-beta ({beta}{beta}) decay process.

  5. Modeling Stress Strain Relationships and Predicting Failure Probabilities For Graphite Core Components

    SciTech Connect

    Duffy, Stephen

    2013-09-09

    This project will implement inelastic constitutive models that will yield the requisite stress-strain information necessary for graphite component design. Accurate knowledge of stress states (both elastic and inelastic) is required to assess how close a nuclear core component is to failure. Strain states are needed to assess deformations in order to ascertain serviceability issues relating to failure, e.g., whether too much shrinkage has taken place for the core to function properly. Failure probabilities, as opposed to safety factors, are required in order to capture the bariability in failure strength in tensile regimes. The current stress state is used to predict the probability of failure. Stochastic failure models will be developed that can accommodate possible material anisotropy. This work will also model material damage (i.e., degradation of mechanical properties) due to radiation exposure. The team will design tools for components fabricated from nuclear graphite. These tools must readily interact with finite element software--in particular, COMSOL, the software algorithm currently being utilized by the Idaho National Laboratory. For the eleastic response of graphite, the team will adopt anisotropic stress-strain relationships available in COMSO. Data from the literature will be utilized to characterize the appropriate elastic material constants.

  6. No-Core Shell Model for A = 47 and A = 49

    SciTech Connect

    Vary, J P; Negoita, A G; Stoica, S

    2006-11-13

    We apply the no-core shell model to the nuclear structure of odd-mass nuclei straddling {sup 48}Ca. Starting with the NN interaction, that fits two-body scattering and bound state data, we evaluate the nuclear properties of A = 47 and A = 49 nuclei while preserving all the underlying symmetries. Due to model space limitations and the absence of three-body interactions, we incorporate phenomenological interaction terms determined by fits to A = 48 nuclei in a previous effort. Our modified Hamiltonian produces reasonable spectra for these odd-mass nuclei. In addition to the differences in single-particle basis states, the absence of a single-particle Hamiltonian in our no-core approach complicates comparisons with valence effective NN interactions. We focus on purely off-diagonal two-body matrix elements since they are not affected by ambiguities in the different roles for one-body potentials and we compare selected sets of fp-shell matrix elements of our initial and modified Hamiltonians in the harmonic oscillator basis with those of a recent model fp-shell interaction, the GXPF1 interaction of Honma et al. While some significant differences emerge from these comparisons, there is an overall reasonably good correlation between our off-diagonal matrix elements and those of GXPF1.

  7. Multi-core CPU or GPU-accelerated Multiscale Modeling for Biomolecular Complexes

    PubMed Central

    Liao, Tao; Zhang, Yongjie; Kekenes-Huskey, Peter M.; Cheng, Yuhui; Michailova, Anushka; McCulloch, Andrew D.; Holst, Michael; McCammon, J. Andrew

    2013-01-01

    Multi-scale modeling plays an important role in understanding the structure and biological functionalities of large biomolecular complexes. In this paper, we present an efficient computational framework to construct multi-scale models from atomic resolution data in the Protein Data Bank (PDB), which is accelerated by multi-core CPU and programmable Graphics Processing Units (GPU). A multi-level summation of Gaus-sian kernel functions is employed to generate implicit models for biomolecules. The coefficients in the summation are designed as functions of the structure indices, which specify the structures at a certain level and enable a local resolution control on the biomolecular surface. A method called neighboring search is adopted to locate the grid points close to the expected biomolecular surface, and reduce the number of grids to be analyzed. For a specific grid point, a KD-tree or bounding volume hierarchy is applied to search for the atoms contributing to its density computation, and faraway atoms are ignored due to the decay of Gaussian kernel functions. In addition to density map construction, three modes are also employed and compared during mesh generation and quality improvement to generate high quality tetrahedral meshes: CPU sequential, multi-core CPU parallel and GPU parallel. We have applied our algorithm to several large proteins and obtained good results. PMID:24352481

  8. A plastic indentation model for sandwich beams with metallic foam cores

    NASA Astrophysics Data System (ADS)

    Xie, Zhong-You; Yu, Ji-Lin; Zheng, Zhi-Jun

    2011-12-01

    Light weight high performance sandwich composite structures have been used extensively in various load bearing applications. Experiments have shown that the indentation significantly reduces the load bearing capacity of sandwiched beams. In this paper, the indentation behavior of foam core sandwich beams without considering the globally axial and flexural deformation was analyzed using the principle of virtual velocities. A concisely theoretical solution of loading capacity and denting profile was presented. The denting load was found to be proportional to the square root of the denting depth. A finite element model was established to verify the prediction of the model. The load-indentation curves and the profiles of the dented zone predicted by theoretical model and numerical simulation are in good agreement.

  9. A simple model for solute-solvent separation through nanopores based on core-softened potentials

    NASA Astrophysics Data System (ADS)

    de Vasconcelos, Cláudia K. B.; Batista, Ronaldo J. C.; da Rocha Régis, McGlennon; Manhabosco, Taíse M.; de Oliveira, Alan B.

    2016-07-01

    We propose an effective model for solute separation from fluids through reverse osmosis based on core-softened potentials. Such potentials have been used to investigate anomalous fluids in several situations under a great variety of approaches. Due to their simplicity, computational simulations become faster and mathematical treatments are possible. Our model aims to mimic water desalination through nano-membranes through reverse osmosis, for which we have found reasonable qualitative results when confronted against all-atoms simulations found in the literature. The purpose of this work is not to replace any fully atomistic simulation at this stage, but instead to pave the first steps towards coarse-grained models for water desalination processes. This may help to approach problems in larger scales, in size and time, and perhaps make analytical theories more viable.

  10. Inference of ICF Implosion Core Mix using Experimental Data and Theoretical Mix Modeling

    SciTech Connect

    Welser-Sherrill, L; Haynes, D A; Mancini, R C; Cooley, J H; Tommasini, R; Golovkin, I E; Sherrill, M E; Haan, S W

    2008-04-30

    The mixing between fuel and shell materials in Inertial Confinement Fusion (ICF) implosion cores is a current topic of interest. The goal of this work was to design direct-drive ICF experiments which have varying levels of mix, and subsequently to extract information on mixing directly from the experimental data using spectroscopic techniques. The experimental design was accomplished using hydrodynamic simulations in conjunction with Haan's saturation model, which was used to predict the mix levels of candidate experimental configurations. These theoretical predictions were then compared to the mixing information which was extracted from the experimental data, and it was found that Haan's mix model performed well in predicting trends in the width of the mix layer. With these results, we have contributed to an assessment of the range of validity and predictive capability of the Haan saturation model, as well as increased our confidence in the methods used to extract mixing information from experimental data.

  11. The high density phase of the k-NN hard core lattice gas model

    NASA Astrophysics Data System (ADS)

    Nath, Trisha; Rajesh, R.

    2016-07-01

    The k-NN hard core lattice gas model on a square lattice, in which the first k next nearest neighbor sites of a particle are excluded from being occupied by another particle, is the lattice version of the hard disc model in two dimensional continuum. It has been conjectured that the lattice model, like its continuum counterpart, will show multiple entropy-driven transitions with increasing density if the high density phase has columnar or striped order. Here, we determine the nature of the phase at full packing for k up to 820 302 . We show that there are only eighteen values of k, all less than k  =  4134, that show columnar order, while the others show solid-like sublattice order.

  12. Inference of ICF implosion core mix using experimental data and theoretical mix modeling

    SciTech Connect

    Sherrill, Leslie Welser; Haynes, Donald A; Cooley, James H; Sherrill, Manolo E; Mancini, Roberto C; Tommasini, Riccardo; Golovkin, Igor E; Haan, Steven W

    2009-01-01

    The mixing between fuel and shell materials in Inertial Confinement Fusion (lCF) implosion cores is a current topic of interest. The goal of this work was to design direct-drive ICF experiments which have varying levels of mix, and subsequently to extract information on mixing directly from the experimental data using spectroscopic techniques. The experimental design was accomplished using hydrodynamic simulations in conjunction with Haan's saturation model, which was used to predict the mix levels of candidate experimental configurations. These theoretical predictions were then compared to the mixing information which was extracted from the experimental data, and it was found that Haan's mix model predicted trends in the width of the mix layer as a function of initial shell thickness. These results contribute to an assessment of the range of validity and predictive capability of the Haan saturation model, as well as increasing confidence in the methods used to extract mixing information from experimental data.

  13. Simulating HFIR Core Thermal Hydraulics Using 3D-2D Model Coupling

    SciTech Connect

    Travis, Adam R; Freels, James D; Ekici, Kivanc

    2013-01-01

    A model utilizing interdimensional variable coupling is presented for simulating the thermal hydraulic interactions of the High Flux Isotope Reactor (HFIR) core at Oak Ridge National Laboratory (ORNL). The model s domain consists of a single, explicitly represented three-dimensional fuel plate and a simplified two-dimensional coolant channel slice. In simplifying the coolant channel, and thus the number of mesh points in which the Navier-Stokes equations must be solved, the computational cost and solution time are both greatly reduced. In order for the reduced-dimension coolant channel to interact with the explicitly represented fuel plate, however, interdimensional variable coupling must be enacted along all shared boundaries. The primary focus of this paper is in detailing the collection, storage, passage, and application of variables across this interdimensional interface. Comparisons are made showing the general speed-up associated with this simplified coupled model.

  14. Molecular series-tunneling junctions.

    PubMed

    Liao, Kung-Ching; Hsu, Liang-Yan; Bowers, Carleen M; Rabitz, Herschel; Whitesides, George M

    2015-05-13

    Charge transport through junctions consisting of insulating molecular units is a quantum phenomenon that cannot be described adequately by classical circuit laws. This paper explores tunneling current densities in self-assembled monolayer (SAM)-based junctions with the structure Ag(TS)/O2C-R1-R2-H//Ga2O3/EGaIn, where Ag(TS) is template-stripped silver and EGaIn is the eutectic alloy of gallium and indium; R1 and R2 refer to two classes of insulating molecular units-(CH2)n and (C6H4)m-that are connected in series and have different tunneling decay constants in the Simmons equation. These junctions can be analyzed as a form of series-tunneling junctions based on the observation that permuting the order of R1 and R2 in the junction does not alter the overall rate of charge transport. By using the Ag/O2C interface, this system decouples the highest occupied molecular orbital (HOMO, which is localized on the carboxylate group) from strong interactions with the R1 and R2 units. The differences in rates of tunneling are thus determined by the electronic structure of the groups R1 and R2; these differences are not influenced by the order of R1 and R2 in the SAM. In an electrical potential model that rationalizes this observation, R1 and R2 contribute independently to the height of the barrier. This model explicitly assumes that contributions to rates of tunneling from the Ag(TS)/O2C and H//Ga2O3 interfaces are constant across the series examined. The current density of these series-tunneling junctions can be described by J(V) = J0(V) exp(-β1d1 - β2d2), where J(V) is the current density (A/cm(2)) at applied voltage V and βi and di are the parameters describing the attenuation of the tunneling current through a rectangular tunneling barrier, with width d and a height related to the attenuation factor β. PMID:25871745

  15. Selective vulnerability of motor neurons and dissociation of pre- and post-synaptic pathology at the neuromuscular junction in mouse models of spinal muscular atrophy.

    PubMed

    Murray, Lyndsay M; Comley, Laura H; Thomson, Derek; Parkinson, Nick; Talbot, Kevin; Gillingwater, Thomas H

    2008-04-01

    Proximal spinal muscular atrophy (SMA) is a common autosomal recessive childhood form of motor neuron disease. Previous studies have highlighted nerve- and muscle-specific events in SMA, including atrophy of muscle fibres and post-synaptic motor endplates, loss of lower motor neuron cell bodies and denervation of neuromuscular junctions caused by loss of pre-synaptic inputs. Here we have undertaken a detailed morphological investigation of neuromuscular synaptic pathology in the Smn-/-;SMN2 and Smn-/-;SMN2;Delta7 mouse models of SMA. We show that neuromuscular junctions in the transversus abdominis (TVA), levator auris longus (LAL) and lumbrical muscles were disrupted in both mouse models. Pre-synaptic inputs were lost and abnormal accumulations of neurofilament were present, even in early/mid-symptomatic animals in the most severely affected muscle groups. Neuromuscular pathology was more extensive in the postural TVA muscle compared with the fast-twitch LAL and lumbrical muscles. Pre-synaptic pathology in Smn-/-;SMN2;Delta7 mice was reduced compared with Smn-/-;SMN2 mice at late-symptomatic time-points, although post-synaptic pathology was equally severe. We demonstrate that shrinkage of motor endplates does not correlate with loss of motor nerve terminals, signifying that one can occur in the absence of the other. We also demonstrate selective vulnerability of a subpopulation of motor neurons in the caudal muscle band of the LAL. Paralysis with botulinum toxin resulted in less terminal sprouting and ectopic synapse formation in the caudal band compared with the rostral band, suggesting that motor units conforming to a Fast Synapsing (FaSyn) phenotype are likely to be more vulnerable than those with a Delayed Synapsing (DeSyn) phenotype. PMID:18065780

  16. Neuromuscular junction immaturity and muscle atrophy are hallmarks of the ColQ-deficient mouse, a model of congenital myasthenic syndrome with acetylcholinesterase deficiency.

    PubMed

    Sigoillot, Séverine M; Bourgeois, Francine; Karmouch, Jennifer; Molgó, Jordi; Dobbertin, Alexandre; Chevalier, Catherine; Houlgatte, Rémi; Léger, Jean; Legay, Claire

    2016-06-01

    The collagen ColQ anchors acetylcholinesterase (AChE) in the synaptic cleft of the neuromuscular junction (NMJ). It also binds MuSK and perlecan/dystroglycan, 2 signaling platforms of the postsynaptic domain. Mutations in ColQ cause a congenital myasthenic syndrome (CMS) with AChE deficiency. Because the absence of AChE does not fully explain the complexity of the syndrome and there is no curative treatment for the disease, we explored additional potential targets of ColQ by conducting a large genetic screening of ColQ-deficient mice, a model for CMS with AChE deficiency, and analyzed their NMJ and muscle phenotypes. We demonstrated that ColQ controls the development and the maturation of the postsynaptic domain by regulating synaptic gene expression. Notably, ColQ deficiency leads to an up-regulation of the 5 subunits of the nicotinic acetylcholine receptor (AChR), leading to mixed mature and immature AChRs at the NMJ of adult mice. ColQ also regulates the expression of extracellular matrix (ECM) components. However, whereas the ECM mRNAs were down-regulated in vitro, compensation seemed to occur in vivo to maintain normal levels of these mRNAs. Finally, ColQ deficiency leads to a general atrophic phenotype and hypoplasia that affect fast muscles. This study points to new specific hallmarks for this CMS.-Sigoillot, S. M., Bourgeois, F., Karmouch, J., Molgó, J., Dobbertin, A., Chevalier, C., Houlgatte, R., Léger, J., Legay, C. Neuromuscular junction immaturity and muscle atrophy are hallmarks of the ColQ-deficient mouse, a model of congenital myasthenic syndrome with acetylcholinesterase deficiency. PMID:26993635

  17. Junctional Adhesion Molecule A Promotes Epithelial Tight Junction Assembly to Augment Lung Barrier Function

    PubMed Central

    Mitchell, Leslie A.; Ward, Christina; Kwon, Mike; Mitchell, Patrick O.; Quintero, David A.; Nusrat, Asma; Parkos, Charles A.; Koval, Michael

    2016-01-01

    Epithelial barrier function is maintained by tight junction proteins that control paracellular fluid flux. Among these proteins is junctional adhesion molecule A (JAM-A), an Ig fold transmembrane protein. To assess JAM-A function in the lung, we depleted JAM-A in primary alveolar epithelial cells using shRNA. In cultured cells, loss of JAM-A caused an approximately 30% decrease in transepithelial resistance, decreased expression of the tight junction scaffold protein zonula occludens 1, and disrupted junctional localization of the structural transmembrane protein claudin-18. Consistent with findings in other organs, loss of JAM-A decreased β1 integrin expression and impaired filamentous actin formation. Using a model of mild systemic endoxotemia induced by i.p. injection of lipopolysaccharide, we report that JAM-A−/− mice showed increased susceptibility to pulmonary edema. On injury, the enhanced susceptibility of JAM-A−/− mice to edema correlated with increased, transient disruption of claudin-18, zonula occludens 1, and zonula occludens 2 localization to lung tight junctions in situ along with a delay in up-regulation of claudin-4. In contrast, wild-type mice showed no change in lung tight junction morphologic features in response to mild systemic endotoxemia. These findings support a key role of JAM-A in promoting tight junction homeostasis and lung barrier function by coordinating interactions among claudins, the tight junction scaffold, and the cytoskeleton. PMID:25438062

  18. Advanced Test Reactor Core Modeling Update Project Annual Report for Fiscal Year 2012

    SciTech Connect

    David W. Nigg, Principal Investigator; Kevin A. Steuhm, Project Manager

    2012-09-01

    Legacy computational reactor physics software tools and protocols currently used for support of Advanced Test Reactor (ATR) core fuel management and safety assurance, and to some extent, experiment management, are inconsistent with the state of modern nuclear engineering practice, and are difficult, if not impossible, to properly verify and validate (V&V) according to modern standards. Furthermore, the legacy staff knowledge required for application of these tools and protocols from the 1960s and 1970s is rapidly being lost due to staff turnover and retirements. In late 2009, the Idaho National Laboratory (INL) initiated a focused effort, the ATR Core Modeling Update Project, to address this situation through the introduction of modern high-fidelity computational software and protocols. This aggressive computational and experimental campaign will have a broad strategic impact on the operation of the ATR, both in terms of improved computational efficiency and accuracy for support of ongoing DOE programs as well as in terms of national and international recognition of the ATR National Scientific User Facility (NSUF). The ATR Core Modeling Update Project, targeted for full implementation in phase with the next anticipated ATR Core Internals Changeout (CIC) in the 2014-2015 time frame, began during the last quarter of Fiscal Year 2009, and has just completed its third full year. Key accomplishments so far have encompassed both computational as well as experimental work. A new suite of stochastic and deterministic transport theory based reactor physics codes and their supporting nuclear data libraries (HELIOS, KENO6/SCALE, NEWT/SCALE, ATTILA, and an extended implementation of MCNP5) has been installed at the INL under various licensing arrangements. Corresponding models of the ATR and ATRC are now operational with all five codes, demonstrating the basic feasibility of the new code packages for their intended purpose. Of particular importance, a set of as-run core

  19. Towards self-consistent modelling of the Martian dichotomy: Coupled models of simultaneous core and crust formation

    NASA Astrophysics Data System (ADS)

    Keller, T.; Golabek, G. J.; Gerya, T.; Connolly, J.

    2009-12-01

    One of the most striking surface features on Mars is the crustal dichotomy. It is the oldest geological features on Mars and was formed more than 4.1 Ga ago by either exogenic or endogenic processes (e.g. Keller and Tackley, 2009). In order to find an internal origin of the crustal dichotomy, located within a maximum of 400 Ma of planetary differentiation, the thermal state of the planet resulting from core formation needs to be considered. It was suggested that a primordial crust with up to 45 km thickness can be formed already during the Martian core formation (Norman, 1999). Therefore we suggest that the sinking of iron diapirs delivered by pre-differentiated impactors induced impact- and shear heating-related temperature anomalies in the mantle that fostered the formation of early Martian crust. In this study, we examine parameter sets that will likely cause an onset of hemispherical low-degree mantle convection directly after, and coupled to, an already hemispherical core formation. To test this hypothesis we use a numerical model to simulate the formation of the Martian iron core, while peridotite melting is enabled to track melting caused by shear and radioactive heating. We perform 2D simulations using the spherical-Cartesian code I2ELVIS (Gerya and Yuen, 2007). It combines finite differences on a fully staggered rectangular Eulerian grid with Lagrangian marker-in-cell technique. In our model setup, the planet is surrounded by a low viscosity, massless fluid (“sticky air”) to simulate a free surface. We apply a temperature- and stress-dependent viscoplastic rheology inside a Mars-sized planet. Radioactive and shear-heating as well as consumption of latent heat by silicate melting are taken into account. The depth of neutral buoyancy of silicate melt with respect to solid silicates is determined by the difference in compressibility of the liquid and solid phase. To self-consistently simulate the silicate phase changes expected inside a Mars-sized body

  20. Deficiency of transcription factor Brn4 disrupts cochlear gap junction plaques in a model of DFN3 non-syndromic deafness.

    PubMed

    Kidokoro, Yoshinobu; Karasawa, Keiko; Minowa, Osamu; Sugitani, Yoshinobu; Noda, Tetsuo; Ikeda, Katsuhisa; Kamiya, Kazusaku

    2014-01-01

    Brn4, which encodes a POU transcription factor, is the gene responsible for DFN3, an X chromosome-linked, non-syndromic type of hearing loss. Brn4-deficient mice have a low endocochlear potential (EP), hearing loss, and ultrastructural alterations in spiral ligament fibrocytes, however the molecular pathology through which Brn4 deficiency causes low EP is still unclear. Mutations in the Gjb2 and Gjb6 genes encoding the gap junction proteins connexin26 (Cx26) and connexin30 (Cx30) genes, respectively, which encode gap junction proteins and are expressed in cochlear fibrocytes and non-sensory epithelial cells (i.e., cochlear supporting cells) to maintain the proper EP, are responsible for hereditary sensorineural deafness. It has been hypothesized that the gap junction in the cochlea provides an intercellular passage by which K+ is transported to maintain the EP at the high level necessary for sensory hair cell excitation. Here we analyzed the formation of gap junction plaques in cochlear supporting cells of Brn4-deficient mice at different stages by confocal microscopy and three-dimensional graphic reconstructions. Gap junctions from control mice, which are composed mainly of Cx26 and Cx30, formed linear plaques along the cell-cell junction sites with adjacent cells. These plaques formed pentagonal or hexagonal outlines of the normal inner sulcus cells and border cells. Gap junction plaques in Brn4-deficient mice did not, however, show the normal linear structure but instead formed small spots around the cell-cell junction sites. Gap junction lengths were significantly shorter, and the level of Cx26 and Cx30 was significantly reduced in Brn4-deficient mice compared with littermate controls. Thus the Brn4 mutation affected the assembly and localization of gap junction proteins at the cell borders of cochlear supporting cells, suggesting that Brn4 substantially contributes to cochlear gap junction properties to maintain the proper EP in cochleae, similar to connexin

  1. Chirality effect in disordered graphene ribbon junctions

    NASA Astrophysics Data System (ADS)

    Long, Wen

    2012-05-01

    We investigate the influence of edge chirality on the electronic transport in clean or disordered graphene ribbon junctions. By using the tight-binding model and the Landauer-Büttiker formalism, the junction conductance is obtained. In the clean sample, the zero-magnetic-field junction conductance is strongly chirality-dependent in both unipolar and bipolar ribbons, whereas the high-magnetic-field conductance is either chirality-independent in the unipolar or chirality-dependent in the bipolar ribbon. Furthermore, we study the disordered sample in the presence of magnetic field and find that the junction conductance is always chirality-insensitive for both unipolar and bipolar ribbons with adequate disorders. In addition, the disorder-induced conductance plateaus can exist in all chiral bipolar ribbons provided the disorder strength is moderate. These results suggest that we can neglect the effect of edge chirality in fabricating electronic devices based on the magnetotransport in a disordered graphene ribbon.

  2. Exploring the Membrane Potential of Simple Dual-Membrane Systems as Models for Gap-Junction Channels.

    PubMed

    Escalona, Yerko; Garate, Jose A; Araya-Secchi, Raul; Huynh, Tien; Zhou, Ruhong; Perez-Acle, Tomas

    2016-06-21

    The conductance of ion channels can be modulated by a transmembrane potential difference, due to alterations on ion-mobility and also by changes in the pore structure. Despite the vast knowledge regarding the influence of voltage on transport properties of ion channels, little attention has been paid to describe, with atomic detail, the modulation of ionic transport in gap-junction channels (GJCs). Hence, molecular dynamics simulations were performed to explore the conductance of simple dual-membrane systems that account for the very basic features of GJCs. In doing so, we studied the influence of different charge distributions in the channel surface on these idealized systems under external electric fields, paying attention to the behavior of the electrostatic potential, ion density, ion currents, and equilibrium properties. Our results demonstrate that the incorporation of a charge distribution akin GJCs decreased anionic currents, favoring the transport of cationic species. Moreover, a thermodynamic characterization of ionic transport in these systems demonstrate the existence of a kinetic barrier that hinders anionic currents, reinforcing the role played by the internal arrangement of charges in GJCs. Overall, our results provide insights at the atomic scale on the effects of charge distributions over ionic transport, constituting a step forward into a better understanding of GJCs. PMID:27332126

  3. Paired octamer rings of retinoschisin suggest a junctional model for cell-cell adhesion in the retina.

    PubMed

    Tolun, Gökhan; Vijayasarathy, Camasamudram; Huang, Rick; Zeng, Yong; Li, Yan; Steven, Alasdair C; Sieving, Paul A; Heymann, J Bernard

    2016-05-10

    Retinoschisin (RS1) is involved in cell-cell junctions in the retina, but is unique among known cell-adhesion proteins in that it is a soluble secreted protein. Loss-of-function mutations in RS1 lead to early vision impairment in young males, called X-linked retinoschisis. The disease is characterized by separation of inner retinal layers and disruption of synaptic signaling. Using cryo-electron microscopy, we report the structure at 4.1 Å, revealing double octamer rings not observed before. Each subunit is composed of a discoidin domain and a small N-terminal (RS1) domain. The RS1 domains occupy the centers of the rings, but are not required for ring formation and are less clearly defined, suggesting mobility. We determined the structure of the discoidin rings, consistent with known intramolecular and intermolecular disulfides. The interfaces internal to and between rings feature residues implicated in X-linked retinoschisis, indicating the importance of correct assembly. Based on this structure, we propose that RS1 couples neighboring membranes together through octamer-octamer contacts, perhaps modulated by interactions with other membrane components. PMID:27114531

  4. Excimer laser activation of ultra-shallow junctions in doped Si: Modeling, experiments and real time process monitoring

    NASA Astrophysics Data System (ADS)

    Semmar, Nadjib; Darif, Mohamed; Millon, Eric; Petit, Agnès; Etienne, Hasnaa; Delaporte, Philippe

    2012-07-01

    This work concerns the ALDIP (Laser Activation of Doping agents Implanted by Plasma immersion) project that was a successful collaboration with Ion Beam Services (IBS) corporation, the "Lasers, Plasmas and Photonic Processes" (LP3) laboratory and the GREMI laboratory. The aim of this work is to control the melted thickness (i.e. junction thickness in the range 10-100 nm) by the Real Time Reflectivity (TRR) monitoring during the Laser Thermal Processing (LTP). The LTP is achieved by using a KrF laser beam (248 nm, 27 ns) with a homogeneous 'Top-Hat' space distribution to induce a selective melting and the resolidification of the doped Si:B samples on few nanometers. This recrystallization is conducted here after the pre-amorphisation process resulting from the ionic implantation of Si (PIII IBS implanter). Thus, all the studied samples are partially amorphized and boron doped. TRR method allows the accurate evaluation of the melting threshold, the duration of the melting phase, and the maximum melted thickness. Obtained results versus laser fluence are shown in the new case of under vacuum treatment. In order to calibrate the TRR method (to determine the intensity and the profile of the TRR signal versus the melting depth), we have used the secondary ion mass spectrometry (TOF-SIMS) analysis. This technique gives the doping agents profile versus the depth before and after LTP and confirms also the melting kinetics from TRR results.

  5. Modeling light-induced charge transfer dynamics across a metal-molecule-metal junction: bridging classical electrodynamics and quantum dynamics.

    PubMed

    Hu, Zixuan; Ratner, Mark A; Seideman, Tamar

    2014-12-14

    We develop a numerical approach for simulating light-induced charge transport dynamics across a metal-molecule-metal conductance junction. The finite-difference time-domain method is used to simulate the plasmonic response of the metal structures. The Huygens subgridding technique, as adapted to Lorentz media, is used to bridge the vastly disparate length scales of the plasmonic metal electrodes and the molecular system, maintaining accuracy. The charge and current densities calculated with classical electrodynamics are transformed to an electronic wavefunction, which is then propagated through the molecular linker via the Heisenberg equations of motion. We focus mainly on development of the theory and exemplify our approach by a numerical illustration of a simple system consisting of two silver cylinders bridged by a three-site molecular linker. The electronic subsystem exhibits fascinating light driven dynamics, wherein the charge density oscillates at the driving optical frequency, exhibiting also the natural system timescales, and a resonance phenomenon leads to strong conductance enhancement. PMID:25494729

  6. Modeling light-induced charge transfer dynamics across a metal-molecule-metal junction: Bridging classical electrodynamics and quantum dynamics

    NASA Astrophysics Data System (ADS)

    Hu, Zixuan; Ratner, Mark A.; Seideman, Tamar

    2014-12-01

    We develop a numerical approach for simulating light-induced charge transport dynamics across a metal-molecule-metal conductance junction. The finite-difference time-domain method is used to simulate the plasmonic response of the metal structures. The Huygens subgridding technique, as adapted to Lorentz media, is used to bridge the vastly disparate length scales of the plasmonic metal electrodes and the molecular system, maintaining accuracy. The charge and current densities calculated with classical electrodynamics are transformed to an electronic wavefunction, which is then propagated through the molecular linker via the Heisenberg equations of motion. We focus mainly on development of the theory and exemplify our approach by a numerical illustration of a simple system consisting of two silver cylinders bridged by a three-site molecular linker. The electronic subsystem exhibits fascinating light driven dynamics, wherein the charge density oscillates at the driving optical frequency, exhibiting also the natural system timescales, and a resonance phenomenon leads to strong conductance enhancement.

  7. Paired octamer rings of retinoschisin suggest a junctional model for cell–cell adhesion in the retina

    PubMed Central

    Tolun, Gökhan; Vijayasarathy, Camasamudram; Huang, Rick; Zeng, Yong; Li, Yan; Steven, Alasdair C.; Sieving, Paul A.

    2016-01-01

    Retinoschisin (RS1) is involved in cell–cell junctions in the retina, but is unique among known cell-adhesion proteins in that it is a soluble secreted protein. Loss-of-function mutations in RS1 lead to early vision impairment in young males, called X-linked retinoschisis. The disease is characterized by separation of inner retinal layers and disruption of synaptic signaling. Using cryo-electron microscopy, we report the structure at 4.1 Å, revealing double octamer rings not observed before. Each subunit is composed of a discoidin domain and a small N-terminal (RS1) domain. The RS1 domains occupy the centers of the rings, but are not required for ring formation and are less clearly defined, suggesting mobility. We determined the structure of the discoidin rings, consistent with known intramolecular and intermolecular disulfides. The interfaces internal to and between rings feature residues implicated in X-linked retinoschisis, indicating the importance of correct assembly. Based on this structure, we propose that RS1 couples neighboring membranes together through octamer–octamer contacts, perhaps modulated by interactions with other membrane components. PMID:27114531

  8. Modeling light-induced charge transfer dynamics across a metal-molecule-metal junction: Bridging classical electrodynamics and quantum dynamics

    SciTech Connect

    Hu, Zixuan; Ratner, Mark A.; Seideman, Tamar

    2014-12-14

    We develop a numerical approach for simulating light-induced charge transport dynamics across a metal-molecule-metal conductance junction. The finite-difference time-domain method is used to simulate the plasmonic response of the metal structures. The Huygens subgridding technique, as adapted to Lorentz media, is used to bridge the vastly disparate length scales of the plasmonic metal electrodes and the molecular system, maintaining accuracy. The charge and current densities calculated with classical electrodynamics are transformed to an electronic wavefunction, which is then propagated through the molecular linker via the Heisenberg equations of motion. We focus mainly on development of the theory and exemplify our approach by a numerical illustration of a simple system consisting of two silver cylinders bridged by a three-site molecular linker. The electronic subsystem exhibits fascinating light driven dynamics, wherein the charge density oscillates at the driving optical frequency, exhibiting also the natural system timescales, and a resonance phenomenon leads to strong conductance enhancement.

  9. NON-EQUILIBRIUM CHEMISTRY OF DYNAMICALLY EVOLVING PRESTELLAR CORES. I. BASIC MAGNETIC AND NON-MAGNETIC MODELS AND PARAMETER STUDIES

    SciTech Connect

    Tassis, Konstantinos; Willacy, Karen; Yorke, Harold W.; Turner, Neal J.

    2012-07-01

    We combine dynamical and non-equilibrium chemical modeling of evolving prestellar molecular cloud cores and investigate the evolution of molecular abundances in the contracting core. We model both magnetic cores, with varying degrees of initial magnetic support, and non-magnetic cores, with varying collapse delay times. We explore, through a parameter study, the competing effects of various model parameters in the evolving molecular abundances, including the elemental C/O ratio, the temperature, and the cosmic-ray ionization rate. We find that different models show their largest quantitative differences at the center of the core, whereas the outer layers, which evolve slower, have abundances which are severely degenerate among different dynamical models. There is a large range of possible abundance values for different models at a fixed evolutionary stage (central density), which demonstrates the large potential of chemical differentiation in prestellar cores. However, degeneracies among different models, compounded with uncertainties induced by other model parameters, make it difficult to discriminate among dynamical models. To address these difficulties, we identify abundance ratios between particular molecules, the measurement of which would have maximal potential for discrimination among the different models examined here. In particular, we find that the ratios between NH{sub 3} and CO, NH{sub 2} and CO, and NH{sub 3} and HCO{sup +} are sensitive to the evolutionary timescale, and that the ratio between HCN and OH is sensitive to the C/O ratio. Finally, we demonstrate that measurements of the central deviation (central depletion or enhancement) of abundances of certain molecules are good indicators of the dynamics of the core.

  10. A core stochastic population projection model for Florida manatees (Trichechus manatus latirostris)

    USGS Publications Warehouse

    Runge, M.C.; Sanders-Reed, C.A.; Fonnesbeck, C.J.

    2007-01-01

    probability of extinction is low, the model predicts that current and emerging threats are likely to result in a long-term decline in the statewide population and a change in the regional distribution of manatees. Analyses of sensitivity and variance contribution highlight the importance of reducing uncertainty in some life-history parameters, particularly adult survival, temporal variance of adult survival, and long-term warm-water capacity. This core biological model is expected to evolve over time, as better information becomes available about manatees and their habitat, and as new assessment needs arise. We anticipate that this core model will be customized for other state and federal assessments in the near future.

  11. A Core Stochastic Population Projection Model for Florida Manatees (Trichechus manatus latirostris)

    USGS Publications Warehouse

    Runge, Michael C.; Sanders-Reed, Carol A.; Fonnesbeck, Christopher J.

    2007-01-01

    probability of extinction is low, the model predicts that current and emerging threats are likely to result in a long-term decline in the statewide population and a change in the regional distribution of manatees. Analyses of sensitivity and variance contribution highlight the importance of reducing uncertainty in some life-history parameters, particularly adult survival, temporal variance of adult survival, and long-term warm-water capacity. This core biological model is expected to evolve over time, as better information becomes available about manatees and their habitat, and as new assessment needs arise. We anticipate that this core model will be customized for other state and federal assessments in the near future.

  12. Thermodynamics and the hydrophobic effect in a core-softened model and comparison with experiments

    NASA Astrophysics Data System (ADS)

    Huš, Matej; Urbic, Tomaz

    2014-08-01

    A simple and computationally inexpensive core-softened model, originally proposed by Franzese [G. Franzese, J. Mol. Liq. 136, 267 (2007), 10.1016/j.molliq.2007.08.021], was adopted to show that it exhibits properties of waterlike fluid and hydrophobic effect. The potential used between particles is spherically symmetric with two characteristic lengths. Thermodynamics of nonpolar solvation were modeled as an insertion of a modified Lennard-Jones particle. It was investigated how the anomalous predictions of the model as well as the nonpolar solvation compare with the experimental data for water anomalies and the temperature dependence of noble gases hydration. It was shown that the model qualitatively follows the same trends as water. The model is able to reproduce waterlike anomalous properties (density maximum, heat capacity minimum, isothermal compressibility, etc.) and hydrophobic effect (minimum solubility for nonpolar solutes near ambient conditions, increased solubility of larger noble gases, etc.). It is argued that the model yields similar results as more complex and computationally expensive models.

  13. Emergence of cluster structures and collectivity within a no-core shell-model framework

    NASA Astrophysics Data System (ADS)

    Launey, K. D.; Dreyfuss, A. C.; Draayer, J. P.; Dytrych, T.; Baker, R.

    2014-12-01

    An innovative symmetry-guided concept, which capitalizes on partial as well as exact symmetries that underpin the structure of nuclei, is discussed. Within this framework, ab initio applications of the theory to light nuclei reveal the origin of collective modes and the emergence a simple orderly pattern from first principles. This provides a strategy for determining the nature of bound states of nuclei in terms of a relatively small fraction of the complete shell-model space, which, in turn, can be used to explore ultra-large model spaces for a description of alpha-cluster and highly deformed structures together with the associated rotations. We find that by using only a fraction of the model space extended far beyond current no-core shell-model limits and a long-range interaction that respects the symmetries in play, the outcome reproduces characteristic features of the low-lying 0+ states in 12 C (including the elusive Hoyle state and its 2+ excitation) and agrees with ab initio results in smaller spaces. This is achieved by selecting those particle configurations and components of the interaction found to be foremost responsible for the primary physics governing clustering phenomena and large spatial deformation in the ground-state and Hoyle-state rotational bands of 12 C. For these states, we offer a novel perspective emerging out of no-core shell-model considerations, including a discussion of associated nuclear deformation, matter radii, and density distribution. The framework we find is also extensible to negative-parity states (e.g., the 3-1 state in 12C) and beyond, namely, to the low-lying 0+ states of 8Be as well as the ground-state rotational band of Ne, Mg, and Si isotopes. The findings inform key features of the nuclear interaction and point to a new insight into the formation of highly-organized simple patterns in nuclear dynamics.

  14. Two-dimensional Core-collapse Supernova Models with Multi-dimensional Transport

    NASA Astrophysics Data System (ADS)

    Dolence, Joshua C.; Burrows, Adam; Zhang, Weiqun

    2015-02-01

    We present new two-dimensional (2D) axisymmetric neutrino radiation/hydrodynamic models of core-collapse supernova (CCSN) cores. We use the CASTRO code, which incorporates truly multi-dimensional, multi-group, flux-limited diffusion (MGFLD) neutrino transport, including all relevant {O}(v/c) terms. Our main motivation for carrying out this study is to compare with recent 2D models produced by other groups who have obtained explosions for some progenitor stars and with recent 2D VULCAN results that did not incorporate {O}(v/c) terms. We follow the evolution of 12, 15, 20, and 25 solar-mass progenitors to approximately 600 ms after bounce and do not obtain an explosion in any of these models. Though the reason for the qualitative disagreement among the groups engaged in CCSN modeling remains unclear, we speculate that the simplifying "ray-by-ray" approach employed by all other groups may be compromising their results. We show that "ray-by-ray" calculations greatly exaggerate the angular and temporal variations of the neutrino fluxes, which we argue are better captured by our multi-dimensional MGFLD approach. On the other hand, our 2D models also make approximations, making it difficult to draw definitive conclusions concerning the root of the differences between groups. We discuss some of the diagnostics often employed in the analyses of CCSN simulations and highlight the intimate relationship between the various explosion conditions that have been proposed. Finally, we explore the ingredients that may be missing in current calculations that may be important in reproducing the properties of the average CCSNe, should the delayed neutrino-heating mechanism be the correct mechanism of explosion.

  15. Proposed Core Competencies and Empirical Validation Procedure in Competency Modeling: Confirmation and Classification.

    PubMed

    Baczyńska, Anna K; Rowiński, Tomasz; Cybis, Natalia

    2016-01-01

    Competency models provide insight into key skills which are common to many positions in an organization. Moreover, there is a range of competencies that is used by many companies. Researchers have developed core competency terminology to underline their cross-organizational value. The article presents a theoretical model of core competencies consisting of two main higher-order competencies called performance and entrepreneurship. Each of them consists of three elements: the performance competency includes cooperation, organization of work and goal orientation, while entrepreneurship includes innovativeness, calculated risk-taking and pro-activeness. However, there is lack of empirical validation of competency concepts in organizations and this would seem crucial for obtaining reliable results from organizational research. We propose a two-step empirical validation procedure: (1) confirmation factor analysis, and (2) classification of employees. The sample consisted of 636 respondents (M = 44.5; SD = 15.1). Participants were administered a questionnaire developed for the study purpose. The reliability, measured by Cronbach's alpha, ranged from 0.60 to 0.83 for six scales. Next, we tested the model using a confirmatory factor analysis. The two separate, single models of performance and entrepreneurial orientations fit quite well to the data, while a complex model based on the two single concepts needs further research. In the classification of employees based on the two higher order competencies we obtained four main groups of employees. Their profiles relate to those found in the literature, including so-called niche finders and top performers. Some proposal for organizations is discussed. PMID:27014111

  16. TWO-DIMENSIONAL CORE-COLLAPSE SUPERNOVA MODELS WITH MULTI-DIMENSIONAL TRANSPORT

    SciTech Connect

    Dolence, Joshua C.; Burrows, Adam; Zhang, Weiqun E-mail: burrows@astro.princeton.edu

    2015-02-10

    We present new two-dimensional (2D) axisymmetric neutrino radiation/hydrodynamic models of core-collapse supernova (CCSN) cores. We use the CASTRO code, which incorporates truly multi-dimensional, multi-group, flux-limited diffusion (MGFLD) neutrino transport, including all relevant O(v/c) terms. Our main motivation for carrying out this study is to compare with recent 2D models produced by other groups who have obtained explosions for some progenitor stars and with recent 2D VULCAN results that did not incorporate O(v/c) terms. We follow the evolution of 12, 15, 20, and 25 solar-mass progenitors to approximately 600 ms after bounce and do not obtain an explosion in any of these models. Though the reason for the qualitative disagreement among the groups engaged in CCSN modeling remains unclear, we speculate that the simplifying ''ray-by-ray'' approach employed by all other groups may be compromising their results. We show that ''ray-by-ray'' calculations greatly exaggerate the angular and temporal variations of the neutrino fluxes, which we argue are better captured by our multi-dimensional MGFLD approach. On the other hand, our 2D models also make approximations, making it difficult to draw definitive conclusions concerning the root of the differences between groups. We discuss some of the diagnostics often employed in the analyses of CCSN simulations and highlight the intimate relationship between the various explosion conditions that have been proposed. Finally, we explore the ingredients that may be missing in current calculations that may be important in reproducing the properties of the average CCSNe, should the delayed neutrino-heating mechanism be the correct mechanism of explosion.

  17. Proposed Core Competencies and Empirical Validation Procedure in Competency Modeling: Confirmation and Classification

    PubMed Central

    Baczyńska, Anna K.; Rowiński, Tomasz; Cybis, Natalia

    2016-01-01

    Competency models provide insight into key skills which are common to many positions in an organization. Moreover, there is a range of competencies that is used by many companies. Researchers have developed core competency terminology to underline their cross-organizational value. The article presents a theoretical model of core competencies consisting of two main higher-order competencies called performance and entrepreneurship. Each of them consists of three elements: the performance competency includes cooperation, organization of work and goal orientation, while entrepreneurship includes innovativeness, calculated risk-taking and pro-activeness. However, there is lack of empirical validation of competency concepts in organizations and this would seem crucial for obtaining reliable results from organizational research. We propose a two-step empirical validation procedure: (1) confirmation factor analysis, and (2) classification of employees. The sample consisted of 636 respondents (M = 44.5; SD = 15.1). Participants were administered a questionnaire developed for the study purpose. The reliability, measured by Cronbach’s alpha, ranged from 0.60 to 0.83 for six scales. Next, we tested the model using a confirmatory factor analysis. The two separate, single models of performance and entrepreneurial orientations fit quite well to the data, while a complex model based on the two single concepts needs further research. In the classification of employees based on the two higher order competencies we obtained four main groups of employees. Their profiles relate to those found in the literature, including so-called niche finders and top performers. Some proposal for organizations is discussed. PMID:27014111

  18. Evaluating the Efficiency of a Multi-core Aware Multi-objective Optimization Tool for Calibrating the SWAT Model

    SciTech Connect

    Zhang, X.; Izaurralde, R. C.; Zong, Z.; Zhao, K.; Thomson, A. M.

    2012-08-20

    The efficiency of calibrating physically-based complex hydrologic models is a major concern in the application of those models to understand and manage natural and human activities that affect watershed systems. In this study, we developed a multi-core aware multi-objective evolutionary optimization algorithm (MAMEOA) to improve the efficiency of calibrating a worldwide used watershed model (Soil and Water Assessment Tool (SWAT)). The test results show that MAMEOA can save about 1-9%, 26-51%, and 39-56% time consumed by calibrating SWAT as compared with sequential method by using dual-core, quad-core, and eight-core machines, respectively. Potential and limitations of MAMEOA for calibrating SWAT are discussed. MAMEOA is open source software.

  19. Different Paths to Core Pathology: The Equifinal Model of the Schizophrenia Syndrome.

    PubMed

    Green, Isobel W; Glausier, Jill R

    2016-05-01

    Schizophrenia is a clinically heterogeneous disorder that is perhaps more accurately characterized as "the schizophrenia syndrome." This clinical heterogeneity is reflected in the heterogeneous neurobiological presentations associated with the illness. Moreover, even highly specific neural aberrations that are associated with distinct symptoms of schizophrenia are linked to a wide range of risk factors. As such, any individual with schizophrenia likely has a particular set of risk factors that interact and converge to cross the disease threshold, forming a particular etiology that ultimately generates a core pathophysiology. This core pathophysiology may then produce 1 or more symptoms of schizophrenia, leading to common symptoms across individuals in spite of disparate etiologies. As such, the schizophrenia syndrome can be considered as anequifinalentity: a state of dysfunction that can arise from different upstream etiologies. Moreover, schizophrenia etiologies are multifactorial and can involve the interactive effects of a broad range of genetic, environmental, and developmental risk factors. Through a consideration of how disparate etiologies, caused by different sets of risk factors, converge on the same net dysfunction, this paper aims to model the equifinal nature of schizophrenia symptoms. To demonstrate the equifinal model, we discuss how maternal infection and adolescent cannabis use, 2 recognized schizophrenia risk factors, may interact with other genetic, environmental, and/or developmental risk factors to cause the conserved clinical presentation of impaired working memory. PMID:26392629

  20. Core-Shell Model of Folding-Unfolding Transitions (UFT) in Proteins

    NASA Astrophysics Data System (ADS)

    Aroutiounian, Svetlana

    2008-03-01

    There are ˜10^N conformations for a protein of length N to sort out randomly in search of lowest free energy state. Can protein folding be simple and fast? Core-shell model introduces principles, proposes mechanisms and scores residues of fast, reversible UFT in protein. According to it, during UFT the realm of intra-residual interactions leads the residue motion. The scaffold of hydrophilic residues forms external shell of unstructured, tube-like protein in unfolded state, just as the hydrophobic residues form internal scaffold -- core, of the protein in folded state. As UFT proceeds, residue slides into lowest-score position permitted by its structure. Model accounts for experimentally observed features of UFT. It is based on three principles: 1) During UFT protein is virtual - its features or structure are inferred only statistically and with limited precision; 2) Mechanism of UFT memory is not longitudinal, but transverse; 3) Native design overrides specific features of residues - the alphabet of amino acids assumes an intrinsic score-function. Per-residue mechanism of UFT is proposed and score-function is described. Difference graphs of transitional score-function and average genome-wide abundance index show that our score-function is the order parameter of UFT in protein and by virtue of being it, reveals transitional key residues. It echoes the multiple-tier and funnel concepts of FEL perspective. Monte Carlo simulations of UFT in myoglobin illustrate the idea.

  1. Steady flows at the top of earth's core derived from geomagnetic field models

    NASA Technical Reports Server (NTRS)

    Voorhies, Coerte V.

    1986-01-01

    Select models of the main geomagnetic field and its secular variation are extrapolated to the base of an insulating mantle and used to estimate the adjacent fluid motion of a perfectly conducting outer core. The assumption of steady motion provides formally unique solutions and is tested along with that of no upwelling. The hypothesis of no upwelling is found to be substantially worse than that of steady motion. Although the actual motion is not thought to be steady, the large-scale secular variation at the top of the core can be adequately described by a large-scale, combined toroidal-poloidal circulation which is steady for intervals of at least a decade or two. The derived flows include a bulk westward drift but are complicated by superimposed jets, gyres, and surface divergence indicative of vigorous vertical motion at depth. The circulation pattern and key global properties including rms speed, upwelling, and westward drift are found to be fairly insensitive to variations in modeling parameters.

  2. Zonal Flow Velocimetry using Acoustic Modes in Experimental Models of a Planetary Core

    NASA Astrophysics Data System (ADS)

    Adams, M. M.; Mautino, A. R.; Stone, D.; Triana, S. A.; Lekic, V.; Lathrop, D. P.

    2015-12-01

    Rotating hydromagnetic experiments can serve as models of planetary cores, matching some of the dimensionless parameters relevant to planets. One challenge with such experiments is determining the flows present. The opacity of the fluids used in these experiments (e.g. liquid sodium) prevents direct flow visualization techniques from being employed. One method allowing determination of zonal flows in such experiments is acoustic mode velocimetry. In this technique, the rotational splittings of acoustic mode spectra are used to infer the azimuthal velocity profile of the flow. Here we present the use of this technique to study flows in experimental models of the Earth's core. Most of these results were obtained in a 60 cm diameter spherical Couette device, with a 20 cm diameter inner sphere, and using nitrogen gas as the working fluid. Turbulent flow is driven in the system via differential rotation of the outer shell and inner sphere. Acoustic modes are excited in the fluid volume using a speaker, and microphones are used to measure the frequencies and rotational splittings of the modes. We compare the observed splittings with those predicted by theory as a way of validating the method, and infer mean flows from these observations. We also present some preliminary results of acoustic studies in the 3 m diameter liquid sodium spherical Couette experiment. Finally, we discuss future prospects for this experimental technique.

  3. Doped semiconductor nanocrystal junctions

    NASA Astrophysics Data System (ADS)

    Borowik, Ł.; Nguyen-Tran, T.; Roca i Cabarrocas, P.; Mélin, T.

    2013-11-01

    Semiconductor junctions are the basis of electronic and photovoltaic devices. Here, we investigate junctions formed from highly doped (ND≈1020-1021cm-3) silicon nanocrystals (NCs) in the 2-50 nm size range, using Kelvin probe force microscopy experiments with single charge sensitivity. We show that the charge transfer from doped NCs towards a two-dimensional layer experimentally follows a simple phenomenological law, corresponding to formation of an interface dipole linearly increasing with the NC diameter. This feature leads to analytically predictable junction properties down to quantum size regimes: NC depletion width independent of the NC size and varying as ND-1/3, and depleted charge linearly increasing with the NC diameter and varying as ND1/3. We thus establish a "nanocrystal counterpart" of conventional semiconductor planar junctions, here however valid in regimes of strong electrostatic and quantum confinements.

  4. Tight Junction Proteins in Human Schwann Cell Autotypic Junctions

    PubMed Central

    Alanne, Maria H.; Pummi, Kati; Heape, Anthony M.; Grènman, Reidar; Peltonen, Juha; Peltonen, Sirkku

    2009-01-01

    Tight junctions (TJs) form physical barriers in various tissues and regulate paracellular transport of ions, water, and molecules. Myelinating Schwann cells form highly organized structures, including compact myelin, nodes of Ranvier, paranodal regions, Schmidt-Lanterman incisures, periaxonal cytoplasmic collars, and mesaxons. Autotypic TJs are formed in non-compacted myelin compartments between adjacent membrane lamellae of the same Schwann cell. Using indirect immunofluorescence and RT-PCR, we analyzed the expression of adherens junction (E-cadherin) and TJ [claudins, zonula occludens (ZO)-1, occludin] components in human peripheral nerve endoneurium, showing clear differences with published rodent profiles. Adult nerve paranodal regions contained E-cadherin, claudin-1, claudin-2, and ZO-1. Schmidt-Lanterman incisures contained E-cadherin, claudin-1, claudin-2, claudin-3, claudin-5, ZO-1, and occludin. Mesaxons contained E-cadherin, claudin-1, claudin-2, claudin-3, ZO-1, and occludin. None of the proteins studied were associated with nodal inter-Schwann cell junctions. Fetal nerve expression of claudin-1, claudin-3, ZO-1, and occludin was predominantly punctate, with a mesaxonal labeling pattern, but paranodal (ZO-1, claudin-3) and Schmidt-Lanterman incisure (claudins-1 and -3) expression profiles typical of compact myelin were visible by gestational week 37. The clear differences observed between human and published rodent nerve profiles emphasize the importance of human studies when translating the results of animal models to human diseases. (J Histochem Cytochem 57:523–529, 2009) PMID:19153196

  5. Using archaeomagnetic field models to constrain the physics of the core: robustness and preferred locations of reversed flux patches

    NASA Astrophysics Data System (ADS)

    Terra-Nova, Filipe; Amit, Hagay; Hartmann, Gelvam A.; Trindade, Ricardo I. F.

    2016-06-01

    Archaeomagnetic field models cover longer timescales than historical models and may therefore resolve the motion of geomagnetic features on the core-mantle boundary (CMB) in a more meaningful statistical sense. Here we perform a detailed appraisal of archaeomagnetic field models to infer some aspects of the physics of the outer core. We characterize and compare the identification and tracking of reversed flux patches (RFPs) in order to assess the RFPs robustness. We find similar behaviour within a family of models but differences among different families, suggesting that modelling strategy is more influential than data set. Similarities involve recurrent positions of RFPs, but no preferred direction of motion is found. The tracking of normal flux patches (NFPs) shows similar qualitative behaviour confirming that RFPs identification and tracking is not strongly biased by their relative weakness. We also compare the tracking of RFPs with that of the historical field model gufm1 and with seismic anomalies of the lowermost mantle to explore the possibility that RFPs have preferred locations prescribed by lower mantle lateral heterogeneity. The archaeomagnetic field model that most resembles the historical field is interpreted in terms of core dynamics and core-mantle thermal interactions. This model exhibits correlation between RFPs and low seismic shear velocity in co-latitude and a shift in longitude. These results shed light on core processes, in particular we infer toroidal field lines with azimuthal orientation below the CMB and large fluid upwelling structures with a width of about 80° (Africa) and 110° (Pacific) at the top of the core. Finally, similar preferred locations of RFPs in the past 9 kyr and 3 kyr of the same archaeomagnetic field model suggests that a 3 kyr period is sufficiently long to reliably detect mantle control on core dynamics. This allows estimating an upper bound of 220 - 310 km for the magnetic boundary layer thickness below the CMB.

  6. Effective Operators Within the Ab Initio No-Core Shell Model

    SciTech Connect

    Stetcu, I; Barrett, B R; Navratil, P; Vary, J P

    2004-11-30

    We implement an effective operator formalism for general one- and two-body operators, obtaining results consistent with the no-core shell model (NCSM) wave functions. The Argonne V8' nucleon-nucleon potential was used in order to obtain realistic wave functions for {sup 4}He, {sup 6}Li and {sup 12}C. In the NCSM formalism, we compute electromagnetic properties using the two-body cluster approximation for the effective operators and obtain results which are sensitive to the range of the bare operator. To illuminate the dependence on the range, we employ a Gaussian two-body operator of variable range, finding weak renormalization of long range operators (e.g., quadrupole) in a fixed model space. This is understood in terms of the two-body cluster approximation which accounts mainly for short-range correlations. Consequently, short range operators, such as the relative kinetic energy, will be well renormalized in the two-body cluster approximation.

  7. Network-element view information model for an optical burst core switch

    NASA Astrophysics Data System (ADS)

    Kan, Chao; Balt, Halt; Michel, Stephane R.; Verchere, Dominique G.

    2001-10-01

    To natively support the bursty IP datagrams over all-optical Wavelength Division Multiplexing (WDM) networks, the Optical Burst Switching (OBS) WDM network has been proposed as a suitable architecture for future optical Internet backbone networks. However, managing the OBS network will be complicated due to the scale of the networks and the correlation between different technology layers. This paper presents an information model for the OBS core node, from the network-element view, to describe the management information flows between the optical burst layer and the traditional WDM transport layer, and how to model them using various Managed Objects (MOs). We also provide the structure of Management Information Base (MIB) used in SNMP management interface for managing the parameters identified at different layers.

  8. Gas Core Reactor Numerical Simulation Using a Coupled MHD-MCNP Model

    NASA Technical Reports Server (NTRS)

    Kazeminezhad, F.; Anghaie, S.

    2008-01-01

    Analysis is provided in this report of using two head-on magnetohydrodynamic (MHD) shocks to achieve supercritical nuclear fission in an axially elongated cylinder filled with UF4 gas as an energy source for deep space missions. The motivation for each aspect of the design is explained and supported by theory and numerical simulations. A subsequent report will provide detail on relevant experimental work to validate the concept. Here the focus is on the theory of and simulations for the proposed gas core reactor conceptual design from the onset of shock generations to the supercritical state achieved when the shocks collide. The MHD model is coupled to a standard nuclear code (MCNP) to observe the neutron flux and fission power attributed to the supercritical state brought about by the shock collisions. Throughout the modeling, realistic parameters are used for the initial ambient gaseous state and currents to ensure a resulting supercritical state upon shock collisions.

  9. Symmetry-Adapted No-Core Shell Model for Light Nuclei

    NASA Astrophysics Data System (ADS)

    Launey, K. D.; Dytrych, T.; Draayer, J. P.; Tobin, G. K.; Ferriss, M. C.; Langr, D.; Dreyfuss, A. C.; Maris, P.; Vary, J. P.; Bahri, C.

    2014-09-01

    We present results for p-shell nuclei based on the ab initio symmetry-adapted no-core shell model that utilizes an SU(3) coupling scheme. Details given for 12C are reflective of similar results found for 6Li, 8B, 8Be, and 16O, all of which exhibit a strong preference for large quadrupole deformations and a narrow set of intrinsic spin values. The outcome suggests that a small subspace of symmetry-adapted configurations can very closely approximate the exact solutions. The symmetry patterns unveiled in these results are, in turn, employed to explore ultra-large model spaces for 12C, in particular to study the elusive Hoyle state, as well as for 8Be and sd-shell nuclei including Ne and Mg.

  10. Mean-field dynamic criticality and geometric transition in the Gaussian core model

    NASA Astrophysics Data System (ADS)

    Coslovich, Daniele; Ikeda, Atsushi; Miyazaki, Kunimasa

    2016-04-01

    We use molecular dynamics simulations to investigate dynamic heterogeneities and the potential energy landscape of the Gaussian core model (GCM). Despite the nearly Gaussian statistics of particles' displacements, the GCM exhibits giant dynamic heterogeneities close to the dynamic transition temperature. The divergence of the four-point susceptibility is quantitatively well described by the inhomogeneous version of the mode-coupling theory. Furthermore, the potential energy landscape of the GCM is characterized by large energy barriers, as expected from the lack of activated, hopping dynamics, and display features compatible with a geometric transition. These observations demonstrate that all major features of mean-field dynamic criticality can be observed in a physically sound, three-dimensional model.

  11. Mean-field dynamic criticality and geometric transition in the Gaussian core model.

    PubMed

    Coslovich, Daniele; Ikeda, Atsushi; Miyazaki, Kunimasa

    2016-04-01

    We use molecular dynamics simulations to investigate dynamic heterogeneities and the potential energy landscape of the Gaussian core model (GCM). Despite the nearly Gaussian statistics of particles' displacements, the GCM exhibits giant dynamic heterogeneities close to the dynamic transition temperature. The divergence of the four-point susceptibility is quantitatively well described by the inhomogeneous version of the mode-coupling theory. Furthermore, the potential energy landscape of the GCM is characterized by large energy barriers, as expected from the lack of activated, hopping dynamics, and display features compatible with a geometric transition. These observations demonstrate that all major features of mean-field dynamic criticality can be observed in a physically sound, three-dimensional model. PMID:27176347

  12. Preservice Secondary Teachers' Conceptions from a Mathematical Modeling Activity and Connections to the Common Core State Standards

    ERIC Educational Resources Information Center

    Stohlmann, Micah; Maiorca, Cathrine; Olson, Travis A.

    2015-01-01

    Mathematical modeling is an essential integrated piece of the Common Core State Standards. However, researchers have shown that mathematical modeling activities can be difficult for teachers to implement. Teachers are more likely to implement mathematical modeling activities if they have their own successful experiences with such activities. This…

  13. Quantum junction solar cells.

    PubMed

    Tang, Jiang; Liu, Huan; Zhitomirsky, David; Hoogland, Sjoerd; Wang, Xihua; Furukawa, Melissa; Levina, Larissa; Sargent, Edward H

    2012-09-12

    Colloidal quantum dot solids combine convenient solution-processing with quantum size effect tuning, offering avenues to high-efficiency multijunction cells based on a single materials synthesis and processing platform. The highest-performing colloidal quantum dot rectifying devices reported to date have relied on a junction between a quantum-tuned absorber and a bulk material (e.g., TiO(2)); however, quantum tuning of the absorber then requires complete redesign of the bulk acceptor, compromising the benefits of facile quantum tuning. Here we report rectifying junctions constructed entirely using inherently band-aligned quantum-tuned materials. Realizing these quantum junction diodes relied upon the creation of an n-type quantum dot solid having a clean bandgap. We combine stable, chemically compatible, high-performance n-type and p-type materials to create the first quantum junction solar cells. We present a family of photovoltaic devices having widely tuned bandgaps of 0.6-1.6 eV that excel where conventional quantum-to-bulk devices fail to perform. Devices having optimal single-junction bandgaps exhibit certified AM1.5 solar power conversion efficiencies of 5.4%. Control over doping in quantum solids, and the successful integration of these materials to form stable quantum junctions, offers a powerful new degree of freedom to colloidal quantum dot optoelectronics. PMID:22881834

  14. Thermodynamic properties of Fe-S alloys from molecular dynamics modeling: Implications for the lunar fluid core

    NASA Astrophysics Data System (ADS)

    Kuskov, Oleg L.; Belashchenko, David K.

    2016-09-01

    Density and sound velocity of Fe-S liquids for the P-T parameters of the lunar core have not been constrained well. From the analysis of seismic wave travel time, Weber et al. (2011) proposed that the lunar core is composed of iron alloyed with ⩽6 wt% of light elements, such as S. A controversial issue in models of planetary core composition concerns whether Fe-S liquids under high pressure - temperature conditions provide sound velocity and density data, which match the seismic model. Here we report the results of molecular dynamics (MD) simulations of iron-sulfur alloys based on Embedded Atom Model (EAM). The results of calculations include caloric, thermal and elastic properties of Fe-S alloys at concentrations of sulfur 0-18 at.%, temperatures up to 2500 K and pressures up to 14 GPa. The effect of sulfur on the elastic properties of Fe-rich melts is most evident in the notably decreased density with added S content. In the MD simulation, the density and bulk modulus KT of liquid Fe-S decrease with increasing sulfur content, while the bulk modulus KS decreases as a whole but has some fluctuations with increasing sulfur content. The sound velocity increases with increasing pressure, but depends weakly on temperature and the concentration of sulfur. For a fluid Fe-S core of the Moon (∼5 GPa/2000 K) with 6-16 at.% S (3.5-10 wt%), the sound velocity and density may be estimated at the level of 4000 m s-1 and 6.25-7.0 g cm-3. Comparison of thermodynamic calculations with the results of interpretation of seismic observations shows good agreement of P-wave velocities in the liquid outer core, while the core density does not match the seismic models. At such concentrations of sulfur and a density by 20-35% higher than the model seismic density, a radius for the fluid outer core should be less than about 330 km found by Weber et al. because at the specified mass and moment of inertia values of the Moon an increase of the core density leads to a decrease of the core

  15. Entangled Cross-Linked Fibres for an Application as Core Material for Sandwich Structures - Part II: Analytical Model

    NASA Astrophysics Data System (ADS)

    Mezeix, L.; Poquillon, D.; Bouvet, C.

    2016-02-01

    Entangled cross-linked carbon, aramid and glass fibres were recently produced by epoxy spraying for an application as core material for sandwich panel. The Young's moduli in compression and tension have been previously measured and briefly summarized in this paper. To optimize the core structure, modelling of these properties has been achieved in the present paper. The cross-link fibres have a random orientation and the stiffness of the epoxy joint is modelled by a torsion spring. A parallel model is chosen for homogenisation. It was found that the experimentally estimated stiffness of these materials fits fairly well with the modelled ones.

  16. Modeling the Submillimeter Dust Continuum Emission from Nearby Low Mass Star Forming Cores

    NASA Astrophysics Data System (ADS)

    Shirley, Y. L.; Young, C. H.; Evans, N. J., II; Rawlings, J. M. C.

    2001-12-01

    Current theories of a low mass star formation predict the evolution of the density distribution, n({r}, t), temperature distribution, T({r}, t), and the velocity field ,{v}({r}, t), of the envelope of protostellar cores with time. Optically thin dust emission at submillimeter wavelengths provides a powerful diagnostic to constrain the envelope density and temperature structure. In this study, thirty-nine low mass cores were mapped with SCUBA at 850 and 450 μ m on the JCMT during sixteen nights between January 1998 and February 2000. The sources were selected from the earliest phases (pre-T Tauri) in the proposed evolutionary scheme for low mass protostars (6 Pre-protostellar Cores (PPCs), 15 Class 0, 18 Class I) with luminosities indicative of low mass star formation (Lbol < 50 Lsun) and with distances less than 450 pc. High signal-to-noise maps allowed azimuthally averaged radial profiling out to 60 arcseconds from the continuum centroid. The similarities and differences in the submillimeter continuum emission properties of the envelopes of PPCs, Class 0, and Class I sources on 103 to 104 AU scales are summarized. We have modeled the normalized radial intensity distributions and spectral energy distributions (SED) for sixteen sources from the SCUBA survey (3 PPCs, 7 Class 0, and 6 Class I) using a one dimensional radiative transfer code (Egan, Leung, & Spagna 1988) with internal heating from a central protostar (Class 0 and I objects) and external heating from the interstellar radiation field (all objects) to calculate the dust temperature distribution. Power law, Bonnor-Ebert, Shu inside-out collapse, and Plummer density distributions were tested to match the observed normalized radial profiles and observed SED simultaneously. Realistic beam profiles and chopping were used to simulate the observations. We find Bonnor-Ebert spheres with central densities of 105 to 106 cm-3 reproduce the PPC radial profiles while power law models (n(r) ~ r-p, p = 1.1 - 2

  17. An Iron-Rain Model for Core Formation on Asteroid 4 Vesta

    NASA Technical Reports Server (NTRS)

    Kiefer, Walter S.; Mittlefehldt, David W.

    2016-01-01

    Asteroid 4 Vesta is differentiated into a crust, mantle, and core, as demonstrated by studies of the eucrite and diogenite meteorites and by data from NASA's Dawn spacecraft. Most models for the differentiation and thermal evolution of Vesta assume that the metal phase completely melts within 20 degrees of the eutectic temperature, well before the onset of silicate melting. In such a model, core formation initially happens by Darcy flow, but this is an inefficient process for liquid metal and solid silicate. However, the likely chemical composition of Vesta, similar to H chondrites with perhaps some CM or CV chondrite, has 13-16 weight percent S. For such compositions, metal-sulfide melting will not be complete until a temperature of at least 1350 degrees Centigrade. The silicate solidus for Vesta's composition is between 1100 and 1150 degrees Centigrade, and thus metal and silicate melting must have substantially overlapped in time on Vesta. In this chemically and physically more likely view of Vesta's evolution, metal sulfide drops will sink by Stokes flow through the partially molten silicate magma ocean in a process that can be envisioned as "iron rain". Measurements of eucrites show that moderately siderophile elements such as Ni, Mo, and W reached chemical equilibrium between the metal and silicate phases, which is an important test for any Vesta differentiation model. The equilibration time is a function of the initial metal grain size, which we take to be 25-45 microns based on recent measurements of H6 chondrites. For these sizes and reasonable silicate magma viscosities, equilibration occurs after a fall distance of just a few meters through the magma ocean. Although metal drops may grow in size by merger with other drops, which increases their settling velocities and decreases the total core formation time, the short equilibration distance ensures that the moderately siderophile elements will reach chemical equilibrium between metal and silicate before

  18. Geoacoustic model at the DH-1 long-core site in the Korean continental margin of the East Sea

    NASA Astrophysics Data System (ADS)

    Ryang, Woo Hun; Kim, Seong Pil

    2014-05-01

    A long core of 23.6 m was acquired at the DH-1 site (37°36.651'N and 129°19.709'E) in the Korean continental margin of the western East Sea. The core site is located near the Donghae City and the water depth is 357.8 m deep. The long-core sediment was recovered using the Portable Remotely Operated Drill (PROD), a fully contained drilling system, remotely operated at the seafloor. The recovered core sediments were analyzed for physical, sedimentological, and geoacoustic properties mostly at 10~30 cm intervals. Based on the long-core data with subbottom and air-gun profiles at the DH-1 core site, a geoacoustic model was firstly reconstructed including water mass. The geoacoustic model comprises 7 geoacoustic units of the core sediments, based on the measurements of 125 P-wave velocities and 121 attenuations. The P-wave speed was compensated to in situ depth below the sea floor using the Hamilton method. The geoacoustic model DH-1 probably contributes for reconstruction of geoacoustic models reflecting vertical and lateral variability of acoustic properties in the Korean continental margin of the western East Sea. Keywords: long core, geoacoustic model, East Sea, continental margin, P-wave speed Acknowledgements: This research was supported by Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (2010-0025733) and by the Ministry of Knowledge Economy through the grant of Marine Geology and Geophysical Mapping Project (GP2010-013).

  19. Modeling cumulus convection with a one-dimensional updraft core model

    NASA Technical Reports Server (NTRS)

    Ridout, James A.

    1990-01-01

    A model developed for use in satellite rainfall retrievals and possibly useful in other areas of research such as in the development of cloud microphysical schemes or in the study of acid rain, is described. This model is unique in that it models explicitly only a small region about the central axis of the updraft, thus avoiding large errors that may occur by averaging variables across the entire updraft. Comparison of the model output with two 3D cloud model simulations proved to be ideal for utilization in the development of this model due to the small wind shear in these cases and to the significant difference in atmospheric stability in the soundings that were used.

  20. MUTILS - a set of efficient modeling tools for multi-core CPUs implemented in MEX

    NASA Astrophysics Data System (ADS)

    Krotkiewski, Marcin; Dabrowski, Marcin

    2013-04-01

    The need for computational performance is common in scientific applications, and in particular in numerical simulations, where high resolution models require efficient processing of large amounts of data. Especi