Science.gov

Sample records for coupled cluster singles

  1. Coupled cluster Green function: Model involving single and double excitations

    NASA Astrophysics Data System (ADS)

    Bhaskaran-Nair, Kiran; Kowalski, Karol; Shelton, William A.

    2016-04-01

    In this paper, we report on the development of a parallel implementation of the coupled-cluster (CC) Green function formulation (GFCC) employing single and double excitations in the cluster operator (GFCCSD). A key aspect of this work is the determination of the frequency dependent self-energy, Σ(ω). The detailed description of the underlying algorithm is provided, including approximations used that preserve the pole structure of the full GFCCSD method, thereby reducing the computational costs while maintaining an accurate character of methodology. Furthermore, for systems with strong local correlation, our formulation reveals a diagonally dominate block structure where as the non-local correlation increases, the block size increases proportionally. To demonstrate the accuracy of our approach, several examples including calculations of ionization potentials for benchmark systems are presented and compared against experiment.

  2. Coupled cluster Green function: Model involving single and double excitations.

    PubMed

    Bhaskaran-Nair, Kiran; Kowalski, Karol; Shelton, William A

    2016-04-14

    In this paper, we report on the development of a parallel implementation of the coupled-cluster (CC) Green function formulation (GFCC) employing single and double excitations in the cluster operator (GFCCSD). A key aspect of this work is the determination of the frequency dependent self-energy, Σ(ω). The detailed description of the underlying algorithm is provided, including approximations used that preserve the pole structure of the full GFCCSD method, thereby reducing the computational costs while maintaining an accurate character of methodology. Furthermore, for systems with strong local correlation, our formulation reveals a diagonally dominate block structure where as the non-local correlation increases, the block size increases proportionally. To demonstrate the accuracy of our approach, several examples including calculations of ionization potentials for benchmark systems are presented and compared against experiment. PMID:27083702

  3. Locally Renormalized Coupled-Cluster Equations for Singly and Doubly Excited Clusters

    SciTech Connect

    Kowalski, Karol

    2006-07-10

    The Numerator-Denominator Connected (NDC) Expansion for the Coupled-Cluster (CC) method [K. Kowalski, P. Piecuch, J. Chem. Phys. 122 (2005) 074107], is used to construct a new set of stationary conditions for approximate coupled-cluster approaches. Several CC approximations based on models involving singles and doubles (CCSD) as well as singles, doubles, and triples (CCSDT) are developed and discussed in the context of ground-state applications. The resulting locally-renormalized CCSD (LR-CCSD) and CCSDT (LR-CCSDT) equations are shown to regularize the expressions for the cluster amplitudes in the challenging situations that occur when the orbital energy differences approach zero. Affordable schemes for handling the local denominators (all-holes-Jn coupling), that naturally appear in locally renormalized formalisms, are also discussed.

  4. Alternative single-reference coupled cluster approaches for multireference problems: The simpler, the better

    NASA Astrophysics Data System (ADS)

    Evangelista, Francesco A.

    2011-06-01

    We report a general implementation of alternative formulations of single-reference coupled cluster theory (extended, unitary, and variational) with arbitrary-order truncation of the cluster operator. These methods are applied to compute the energy of Ne and the equilibrium properties of HF and C2. Potential energy curves for the dissociation of HF and the BeH2 model computed with the extended, variational, and unitary coupled cluster approaches are compared to those obtained from the multireference coupled cluster approach of Mukherjee et al. [J. Chem. Phys. 110, 6171 (1999)] and the internally contracted multireference coupled cluster approach [F. A. Evangelista and J. Gauss, J. Chem. Phys. 134, 114102 (2011), 10.1063/1.3559149]. In the case of Ne, HF, and C2, the alternative coupled cluster approaches yield almost identical bond length, harmonic vibrational frequency, and anharmonic constant, which are more accurate than those from traditional coupled cluster theory. For potential energy curves, the alternative coupled cluster methods are found to be more accurate than traditional coupled cluster theory, but are three to ten times less accurate than multireference coupled cluster approaches. The most challenging benchmark, the BeH2 model, highlights the strong dependence of the alternative coupled cluster theories on the choice of the Fermi vacuum. When evaluated by the accuracy to cost ratio, the alternative coupled cluster methods are not competitive with respect to traditional CC theory, in other words, the simplest theory is found to be the most effective one.

  5. Full coupled cluster singles, doubles and triples model for the description of electron correlation

    SciTech Connect

    Hoffmann, M.R.

    1984-10-01

    Equations for the determination of the cluster coefficients in a full coupled cluster theory involving single, double and triple cluster operators with respect to an independent particle reference, expressible as a single determinant of spin-orbitals, are derived. The resulting wave operator is full, or untruncated, consistant with the choice of cluster operator truncation and the requirements of the connected cluster theorem. A time-independent diagrammatic approach, based on second quantization and the Wick theorem, is employed. Final equations are presented that avoid the construction of rank three intermediary tensors. The model is seen to be a computationally viable, size-extensive, high-level description of electron correlation in small polyatomic molecules.

  6. Coupled dynamic analysis of a single gimbal control moment gyro cluster integrated with an isolation system

    NASA Astrophysics Data System (ADS)

    Luo, Qing; Li, Dongxu; Jiang, Jianping

    2014-01-01

    Control moment gyros (CMGs) are widely used as actuators for attitude control in spacecraft. However, micro-vibrations produced by CMGs will degrade the pointing performance of high-sensitivity instruments on-board the spacecraft. This paper addresses dynamic modelling and performs an analysis on the micro-vibration isolation for a single gimbal CMG (SGCMG) cluster. First, an analytical model was developed to describe both the coupled SGCMG cluster and the multi-axis isolation system that can express the dynamic outputs. This analytical model accurately reflects the mass and inertia properties, the gyroscopic effects and flexible modes of the coupled system, which can be generalized for isolation applications of SGCMG clusters. Second, the analytical model was validated using MSC.NASTRAN software based on the finite element technique. The dynamic characteristics of the coupled system are affected by the mass distribution and the gyroscopic effects of the SGCMGs. The gyroscopic effects produced by the rotary flywheel will stiffen or soften several of the structural modes of the coupled system. In addition, the gyroscopic effect of each SGCMG can interact with or counteract that of others, which induce vibration modes coupled together. Finally, the performance of the passive isolation was analysed. It was demonstrated that the gyroscopic effects should be considered in isolation studies on SGCMG clusters; otherwise, the isolation performance will be underestimated if they are ignored.

  7. Multiple solutions of the single-reference coupled-cluster equations. II. Alternative reference states

    SciTech Connect

    Jankowski, K.; Kowalski, K.; Jankowski, P.

    1995-03-05

    Single-reference coupled-cluster (SR-CC) methods parametrized with respect to four alternative reference-state configurations and orbital sets are applied to the simple H4 model system in which the degree of quasi-degeneracy of the electronic states can be varied in a wide range. Both the ground state and 10 excited states are considered with the aim of numerically studying the attainability and properties of multiple solutions of the system of nonlinear equations for the cluster amplitudes. Comparisons of up to four alternative descriptions of a given state in terms of various solutions of the SR-CC equations are made. It is found that for some excited states different parametrizations yield very close results and that the classification of the solutions into standard and nonstandard ones may not be straightforward. 15 refs., 12 tabs.

  8. Density-fitted singles and doubles coupled cluster on graphics processing units

    SciTech Connect

    Sherrill, David; Sumpter, Bobby G; DePrince, III, A. Eugene

    2014-01-01

    We adapt an algorithm for singles and doubles coupled cluster (CCSD) that uses density fitting (DF) or Cholesky decomposition (CD) in the construction and contraction of all electron repulsion integrals (ERI s) for use on heterogeneous compute nodes consisting of a multicore CPU and at least one graphics processing unit (GPU). The use of approximate 3-index ERI s ameliorates two of the major difficulties in designing scientific algorithms for GPU s: (i) the extremely limited global memory on the devices and (ii) the overhead associated with data motion across the PCI bus. For the benzene trimer described by an aug-cc-pVDZ basis set, the use of a single NVIDIA Tesla C2070 (Fermi) GPU accelerates a CD-CCSD computation by a factor of 2.1, relative to the multicore CPU-only algorithm that uses 6 highly efficient Intel core i7-3930K CPU cores. The use of two Fermis provides an acceleration of 2.89, which is comparable to that observed when using a single NVIDIA Kepler K20c GPU (2.73).

  9. Solving the Independent-Particle Model via Nonunitary Transformation Based on Variational Coupled Cluster Singles.

    PubMed

    Noga, Jozef; Šimunek, Ján

    2010-09-14

    We propose an alternative new approach to obtain the Slater determinant ground state solution within an independent-particle approximation using the exponential ansatz for the wave function (Thouless theorem) and exact treatment in terms of variational coupled cluster singles. Although the resulting nonlinear equations formally represent nonterminating expansions, these can be reformulated to finite expansions in terms of the density matrix correction. The latter can be exactly calculated using a very simple recurrence relation within the occupied-occupied block, while the complementary occupied-virtual and virtual-virtual blocks are related and trivially obtained by subsequent matrix multiplications involving the amplitudes of the single-excitation operator. The density matrix is naturally idempotent in any step of the iterative procedure. Blocks of the density matrix are without any further change, apart from the sign, used in the orbital transformation matrix. The latter is not a unitary one, hence leading to nonorthogonal and unnormalized molecular orbitals. These are, however, biorthogonal and can be easily orthonormalized per blocks, if needed in the post-SCF calculations. Formulation is diagonalization free, and the implementation can be easily parallelized. Finally, the formulation provides a challenging way to the solution with "a priori" localized orbitals, a way toward a linear scaling algorithm. PMID:26616071

  10. Development and Application of Single-Referenced Perturbation and Coupled-Cluster Theories for Excited Electronic States

    NASA Technical Reports Server (NTRS)

    Lee, Timothy J.; Langhoff, Stephen R. (Technical Monitor)

    1997-01-01

    Recent work on the development of single-reference perturbation theories for the study of excited electronic states will be discussed. The utility of these methods will be demonstrated by comparison to linear-response coupled-cluster excitation energies. Results for some halogen molecules of interest in stratospheric chemistry will be presented.

  11. A hierarchy of local coupled cluster singles and doubles response methods for ionization potentials

    NASA Astrophysics Data System (ADS)

    Wälz, Gero; Usvyat, Denis; Korona, Tatiana; Schütz, Martin

    2016-02-01

    We present a hierarchy of local coupled cluster (CC) linear response (LR) methods to calculate ionization potentials (IPs), i.e., excited states with one electron annihilated relative to a ground state reference. The time-dependent perturbation operator V(t), as well as the operators related to the first-order (with respect to V(t)) amplitudes and multipliers, thus are not number conserving and have half-integer particle rank m. Apart from calculating IPs of neutral molecules, the method offers also the possibility to study ground and excited states of neutral radicals as ionized states of closed-shell anions. It turns out that for comparable accuracy IPs require a higher-order treatment than excitation energies; an IP-CC LR method corresponding to CC2 LR or the algebraic diagrammatic construction scheme through second order performs rather poorly. We therefore systematically extended the order with respect to the fluctuation potential of the IP-CC2 LR Jacobian up to IP-CCSD LR, keeping the excitation space of the first-order (with respect to V(t)) cluster operator restricted to the m = /1 2 ⊕ /3 2 subspace and the accuracy of the zero-order (ground-state) amplitudes at the level of CC2 or MP2. For the more expensive diagrams beyond the IP-CC2 LR Jacobian, we employ local approximations. The implemented methods are capable of treating large molecular systems with hundred atoms or more.

  12. Mapping of single-site magnetic anisotropy tensors in weakly coupled spin clusters by torque magnetometry.

    PubMed

    Rigamonti, Luca; Cornia, Andrea; Nava, Andrea; Perfetti, Mauro; Boulon, Marie-Emmanuelle; Barra, Anne-Laure; Zhong, Xiaoliang; Park, Kyungwha; Sessoli, Roberta

    2014-08-28

    Single-crystal torque magnetometry performed on weakly-coupled polynuclear systems provides access to a complete description of single-site anisotropy tensors. Variable-temperature, variable-field torque magnetometry was used to investigate triiron(III) complex [Fe3La(tea)2(dpm)6] (Fe3La), a lanthanum(III)-centred variant of tetrairon(III) single molecule magnets (Fe4) (H3tea = triethanolamine, Hdpm = dipivaloylmethane). Due to the presence of the diamagnetic lanthanoid, magnetic interactions among iron(III) ions (si = 5/2) are very weak (<0.1 cm(−1)) and the magnetic response of Fe3La is predominantly determined by single-site anisotropies. The local anisotropy tensors were found to have Di > 0 and to be quasi-axial with |Ei/Di| ~ 0.05. Their hard axes form an angle of approximately 70° with the threefold molecular axis, which therefore corresponds to an easy magnetic direction for the molecule. The resulting picture was supported by a High Frequency EPR investigation and by DFT calculations. Our study confirms that the array of peripheral iron(III) centres provides substantially noncollinear anisotropy contributions to the ground state of Fe4 complexes, which are of current interest in molecular magnetism and spintronics. PMID:25014192

  13. Communication: Acceleration of coupled cluster singles and doubles via orbital-weighted least-squares tensor hypercontraction

    SciTech Connect

    Parrish, Robert M.; Sherrill, C. David; Hohenstein, Edward G.; Kokkila, Sara I. L.; Martínez, Todd J.

    2014-05-14

    We apply orbital-weighted least-squares tensor hypercontraction decomposition of the electron repulsion integrals to accelerate the coupled cluster singles and doubles (CCSD) method. Using accurate and flexible low-rank factorizations of the electron repulsion integral tensor, we are able to reduce the scaling of the most vexing particle-particle ladder term in CCSD from O(N{sup 6}) to O(N{sup 5}), with remarkably low error. Combined with a T{sub 1}-transformed Hamiltonian, this leads to substantial practical accelerations against an optimized density-fitted CCSD implementation.

  14. Linear Response Coupled Cluster Singles and Doubles Approach with Modified Spectral Resolution of the Similarity Transformed Hamiltonian

    SciTech Connect

    Kowalski, Karol; Hammond, Jeffrey R.; De Jong, Wibe A.

    2007-10-28

    This paper discusses practical scheme of correcting the linear response coupled cluster with singles and doubles (LR-CCSD) equations by shifting their poles, corresponding to the equation-of-motion CCSD (EOMCCSD) excitation energies, through adding the no-iterative corrections due to triples to the EOMCCSD excitation energies. A simple criterion is derived for the excited states to be corrected in the spectral resolution of similarity transformed Hamiltonian on the CCSD level. Benchmark calculations were performed to compare the accuracies of static and dynamic polarizabilities obtained in the way with the CC3 and CCSDT counterparts.

  15. A noniterative asymmetric triple excitation correction for the density-fitted coupled-cluster singles and doubles method: Preliminary applications.

    PubMed

    Bozkaya, Uğur

    2016-04-14

    An efficient implementation of the asymmetric triples correction for the coupled-cluster singles and doubles [ΛCCSD(T)] method [S. A. Kucharski and R. J. Bartlett, J. Chem. Phys. 108, 5243 (1998); T. D. Crawford and J. F. Stanton, Int. J. Quantum Chem. 70, 601 (1998)] with the density-fitting [DF-ΛCCSD(T)] approach is presented. The computational time for the DF-ΛCCSD(T) method is compared with that of ΛCCSD(T). Our results demonstrate that the DF-ΛCCSD(T) method provide substantially lower computational costs than ΛCCSD(T). Further application results show that the ΛCCSD(T) and DF-ΛCCSD(T) methods are very beneficial for the study of single bond breaking problems as well as noncovalent interactions and transition states. We conclude that ΛCCSD(T) and DF-ΛCCSD(T) are very promising for the study of challenging chemical systems, where the coupled-cluster singles and doubles with perturbative triples method fails. PMID:27083709

  16. A noniterative asymmetric triple excitation correction for the density-fitted coupled-cluster singles and doubles method: Preliminary applications

    NASA Astrophysics Data System (ADS)

    Bozkaya, Uǧur

    2016-04-01

    An efficient implementation of the asymmetric triples correction for the coupled-cluster singles and doubles [ΛCCSD(T)] method [S. A. Kucharski and R. J. Bartlett, J. Chem. Phys. 108, 5243 (1998); T. D. Crawford and J. F. Stanton, Int. J. Quantum Chem. 70, 601 (1998)] with the density-fitting [DF-ΛCCSD(T)] approach is presented. The computational time for the DF-ΛCCSD(T) method is compared with that of ΛCCSD(T). Our results demonstrate that the DF-ΛCCSD(T) method provide substantially lower computational costs than ΛCCSD(T). Further application results show that the ΛCCSD(T) and DF-ΛCCSD(T) methods are very beneficial for the study of single bond breaking problems as well as noncovalent interactions and transition states. We conclude that ΛCCSD(T) and DF-ΛCCSD(T) are very promising for the study of challenging chemical systems, where the coupled-cluster singles and doubles with perturbative triples method fails.

  17. The linked singles and doubles model: An approximate theory of electron correlation based on the coupled-cluster ansatz

    NASA Astrophysics Data System (ADS)

    Cullen, John M.; Zerner, Michael C.

    1982-10-01

    From the diagrammatic construction of the full coupled-cluster theory of all single and double excitations, a linearized theory, a direct configuration interaction theory (CISD), a CEPA-like theory, and a linked singles and doubles (LSD) theory are separated. These theories are then compared with one another, with the results from full fourth-order perturbation theory, and with exact results when available. The LSD model, corresponding to the removal of unlinked terms of the CISD, and its spin adapted version, appear most accurate in Pariser-Parr-Pople studies where the exact numbers are known. Examples within the localized bond model are given indicating that this model is also the most successful of those examined in generating not only the basis set correlation, but the necessary delocalization and polarization required to correct for the zeroth-order local description.

  18. Experimental synchronization of chaos in a large ring of mutually coupled single-transistor oscillators: Phase, amplitude, and clustering effects

    SciTech Connect

    Minati, Ludovico E-mail: ludovico.minati@unitn.it

    2014-12-01

    In this paper, experimental evidence of multiple synchronization phenomena in a large (n = 30) ring of chaotic oscillators is presented. Each node consists of an elementary circuit, generating spikes of irregular amplitude and comprising one bipolar junction transistor, one capacitor, two inductors, and one biasing resistor. The nodes are mutually coupled to their neighbours via additional variable resistors. As coupling resistance is decreased, phase synchronization followed by complete synchronization is observed, and onset of synchronization is associated with partial synchronization, i.e., emergence of communities (clusters). While component tolerances affect community structure, the general synchronization properties are maintained across three prototypes and in numerical simulations. The clusters are destroyed by adding long distance connections with distant notes, but are otherwise relatively stable with respect to structural connectivity changes. The study provides evidence that several fundamental synchronization phenomena can be reliably observed in a network of elementary single-transistor oscillators, demonstrating their generative potential and opening way to potential applications of this undemanding setup in experimental modelling of the relationship between network structure, synchronization, and dynamical properties.

  19. Assessment of low-scaling approximations to the equation of motion coupled-cluster singles and doubles equations

    SciTech Connect

    Goings, Joshua J.; Li, Xiaosong; Caricato, Marco; Frisch, Michael J.

    2014-10-28

    Methods for fast and reliable computation of electronic excitation energies are in short supply, and little is known about their systematic performance. This work reports a comparison of several low-scaling approximations to the equation of motion coupled cluster singles and doubles (EOM–CCSD) and linear-response coupled cluster singles and doubles (LR–CCSD) equations with other single reference methods for computing the vertical electronic transition energies of 11 small organic molecules. The methods, including second order equation-of-motion many-body perturbation theory (EOM–MBPT2) and its partitioned variant, are compared to several valence and Rydberg singlet states. We find that the EOM–MBPT2 method was rarely more than a tenth of an eV from EOM–CCSD calculated energies, yet demonstrates a performance gain of nearly 30%. The partitioned equation-of-motion approach, P–EOM–MBPT2, which is an order of magnitude faster than EOM–CCSD, outperforms the CIS(D) and CC2 in the description of Rydberg states. CC2, on the other hand, excels at describing valence states where P–EOM–MBPT2 does not. The difference between the CC2 and P–EOM–MBPT2 can ultimately be traced back to how each method approximates EOM–CCSD and LR–CCSD. The results suggest that CC2 and P–EOM–MBPT2 are complementary: CC2 is best suited for the description of valence states while P–EOM–MBPT2 proves to be a superior O(N{sup 5}) method for the description of Rydberg states.

  20. Quartic scaling second-order approximate coupled cluster singles and doubles via tensor hypercontraction: THC-CC2

    NASA Astrophysics Data System (ADS)

    Hohenstein, Edward G.; Kokkila, Sara I. L.; Parrish, Robert M.; Martínez, Todd J.

    2013-03-01

    The second-order approximate coupled cluster singles and doubles method (CC2) is a valuable tool in electronic structure theory. Although the density fitting approximation has been successful in extending CC2 to larger molecules, it cannot address the steep O(N^5) scaling with the number of basis functions, N. Here, we introduce the tensor hypercontraction (THC) approximation to CC2 (THC-CC2), which reduces the scaling to O(N^4) and the storage requirements to O(N^2). We present an algorithm to efficiently evaluate the THC-CC2 correlation energy and demonstrate its quartic scaling. This implementation of THC-CC2 uses a grid-based least-squares THC (LS-THC) approximation to the density-fitted electron repulsion integrals. The accuracy of the CC2 correlation energy under these approximations is shown to be suitable for most practical applications.

  1. Analytic energy gradients for the coupled-cluster singles and doubles method with the density-fitting approximation.

    PubMed

    Bozkaya, Uğur; Sherrill, C David

    2016-05-01

    An efficient implementation is presented for analytic gradients of the coupled-cluster singles and doubles (CCSD) method with the density-fitting approximation, denoted DF-CCSD. Frozen core terms are also included. When applied to a set of alkanes, the DF-CCSD analytic gradients are significantly accelerated compared to conventional CCSD for larger molecules. The efficiency of our DF-CCSD algorithm arises from the acceleration of several different terms, which are designated as the "gradient terms": computation of particle density matrices (PDMs), generalized Fock-matrix (GFM), solution of the Z-vector equation, formation of the relaxed PDMs and GFM, back-transformation of PDMs and GFM to the atomic orbital (AO) basis, and evaluation of gradients in the AO basis. For the largest member of the alkane set (C10H22), the computational times for the gradient terms (with the cc-pVTZ basis set) are 2582.6 (CCSD) and 310.7 (DF-CCSD) min, respectively, a speed up of more than 8-folds. For gradient related terms, the DF approach avoids the usage of four-index electron repulsion integrals. Based on our previous study [U. Bozkaya, J. Chem. Phys. 141, 124108 (2014)], our formalism completely avoids construction or storage of the 4-index two-particle density matrix (TPDM), using instead 2- and 3-index TPDMs. The DF approach introduces negligible errors for equilibrium bond lengths and harmonic vibrational frequencies. PMID:27155621

  2. Analytic energy gradients for the coupled-cluster singles and doubles method with the density-fitting approximation

    NASA Astrophysics Data System (ADS)

    Bozkaya, Uǧur; Sherrill, C. David

    2016-05-01

    An efficient implementation is presented for analytic gradients of the coupled-cluster singles and doubles (CCSD) method with the density-fitting approximation, denoted DF-CCSD. Frozen core terms are also included. When applied to a set of alkanes, the DF-CCSD analytic gradients are significantly accelerated compared to conventional CCSD for larger molecules. The efficiency of our DF-CCSD algorithm arises from the acceleration of several different terms, which are designated as the "gradient terms": computation of particle density matrices (PDMs), generalized Fock-matrix (GFM), solution of the Z-vector equation, formation of the relaxed PDMs and GFM, back-transformation of PDMs and GFM to the atomic orbital (AO) basis, and evaluation of gradients in the AO basis. For the largest member of the alkane set (C10H22), the computational times for the gradient terms (with the cc-pVTZ basis set) are 2582.6 (CCSD) and 310.7 (DF-CCSD) min, respectively, a speed up of more than 8-folds. For gradient related terms, the DF approach avoids the usage of four-index electron repulsion integrals. Based on our previous study [U. Bozkaya, J. Chem. Phys. 141, 124108 (2014)], our formalism completely avoids construction or storage of the 4-index two-particle density matrix (TPDM), using instead 2- and 3-index TPDMs. The DF approach introduces negligible errors for equilibrium bond lengths and harmonic vibrational frequencies.

  3. Second-order perturbation corrections to singles and doubles coupled-cluster methods: General theory and application to the valence optimized doubles model

    NASA Astrophysics Data System (ADS)

    Gwaltney, Steven R.; Sherrill, C. David; Head-Gordon, Martin; Krylov, Anna I.

    2000-09-01

    We present a general perturbative method for correcting a singles and doubles coupled-cluster energy. The coupled-cluster wave function is used to define a similarity-transformed Hamiltonian, which is partitioned into a zeroth-order part that the reference problem solves exactly plus a first-order perturbation. Standard perturbation theory through second-order provides the leading correction. Applied to the valence optimized doubles (VOD) approximation to the full-valence complete active space self-consistent field method, the second-order correction, which we call (2), captures dynamical correlation effects through external single, double, and semi-internal triple and quadruple substitutions. A factorization approximation reduces the cost of the quadruple substitutions to only sixth order in the size of the molecule. A series of numerical tests are presented showing that VOD(2) is stable and well-behaved provided that the VOD reference is also stable. The second-order correction is also general to standard unwindowed coupled-cluster energies such as the coupled-cluster singles and doubles (CCSD) method itself, and the equations presented here fully define the corresponding CCSD(2) energy.

  4. Coupled Cluster Methods in Lattice Gauge Theory

    NASA Astrophysics Data System (ADS)

    Watson, Nicholas Jay

    Available from UMI in association with The British Library. Requires signed TDF. The many body coupled cluster method is applied to Hamiltonian pure lattice gauge theories. The vacuum wavefunction is written as the exponential of a single sum over the lattice of clusters of gauge invariant operators at fixed relative orientation and separation, generating excitations of the bare vacuum. The basic approximation scheme involves a truncation according to geometrical size on the lattice of the clusters in the wavefunction. For a wavefunction including clusters up to a given size, all larger clusters generated in the Schrodinger equation are discarded. The general formalism is first given, including that for excited states. Two possible procedures for discarding clusters are considered. The first involves discarding clusters describing excitations of the bare vacuum which are larger than those in the given wavefunction. The second involves rearranging the clusters so that they describe fluctuations of the gauge invariant excitations about their self-consistently calculated expectation values, and then discarding fluctuations larger then those in the given wavefunction. The coupled cluster method is applied to the Z_2 and Su(2) models in 2 + 1D. For the Z_2 model, the first procedure gives poor results, while the second gives wavefunctions which explicitly display a phase transition with critical couplings in good agreement with those obtained by other methods. For the SU(2) model, the first procedure also gives poor results, while the second gives vacuum wavefunctions valid at all couplings. The general properties of the wavefunctions at weak coupling are discussed. Approximations with clusters spanning up to four plaquettes are considered. Excited states are calculated, yielding mass gaps with fair scaling properties. Insight is obtained into the form of the wavefunctions at all couplings.

  5. Diagrammatic Vibrational Coupled-Cluster

    NASA Astrophysics Data System (ADS)

    Faucheaux, Jacob A.; Hirata, So

    2015-06-01

    A diagrammatic vibrational coupled-cluster method for calculation of zero-point energies and an equation-of-motion coupled-cluster method for calculation of anharmonic vibrational frequencies are developed. The methods, which we refer to as XVCC and EOM-XVCC respectively, rely on the size-extensive vibrational self-consistient field (XVSCF) method for reference wave functions. The methods retain the efficiency advantages of XVSCF making them suitable for applications to large molecules and solids, while they are numerically shown to accurately predict zero-point energies and frequencies of small molecules as well. In particular, EOM-XVCC is shown to perform well for modes which undergo Fermi resonance where traditional perturbative methods fail. Rules for the systematic generation and interpretation of the XVCC and EOM-XVCC diagrams to any order are presented.

  6. Pair extended coupled cluster doubles

    SciTech Connect

    Henderson, Thomas M.; Scuseria, Gustavo E.; Bulik, Ireneusz W.

    2015-06-07

    The accurate and efficient description of strongly correlated systems remains an important challenge for computational methods. Doubly occupied configuration interaction (DOCI), in which all electrons are paired and no correlations which break these pairs are permitted, can in many cases provide an accurate account of strong correlations, albeit at combinatorial computational cost. Recently, there has been significant interest in a method we refer to as pair coupled cluster doubles (pCCD), a variant of coupled cluster doubles in which the electrons are paired. This is simply because pCCD provides energies nearly identical to those of DOCI, but at mean-field computational cost (disregarding the cost of the two-electron integral transformation). Here, we introduce the more complete pair extended coupled cluster doubles (pECCD) approach which, like pCCD, has mean-field cost and reproduces DOCI energetically. We show that unlike pCCD, pECCD also reproduces the DOCI wave function with high accuracy. Moreover, pECCD yields sensible albeit inexact results even for attractive interactions where pCCD breaks down.

  7. Calculation of two-photon absorption strengths with the approximate coupled cluster singles and doubles model CC2 using the resolution-of-identity approximation.

    PubMed

    Friese, Daniel H; Hättig, Christof; Ruud, Kenneth

    2012-01-21

    An implementation of two-photon absorption matrix elements using the approximate second-order coupled-cluster singles and doubles model CC2 is presented. In this implementation we use the resolution-of-the-identity approximation for the two-electron repulsion integrals to reduce the computational cost. To avoid storage of large arrays we introduce in addition a numerical Laplace transformation of orbital energy denominators for the response of the doubles amplitudes. The error due to the numerical Laplace transformation is found to be negligible. Using this new implementation, we performed a series of benchmark calculations on substituted benzene and azobenzene derivatives to get reference values for TD-DFT results. We show that results obtained with the Coulomb-attenuated B3LYP functional are in reasonable agreement with the coupled-cluster results, whereas other density functionals which do not have a long-range correction give considerably less accurate results. Applications to the AF240 dye molecule and a weakly bound molecular tweezer complex demonstrate that this new RI-CC2 implementation allows for the first time to compute two-photon absorption cross sections with a correlated wave function method for molecules with more than 70 atoms and to apply this method for benchmarking TD-DFT calculations on molecules which are of particular relevance for experimental studies of two-photon absorption. PMID:22130199

  8. An efficient formulation and implementation of the analytic energy gradient method to the single and double excitation coupled-cluster wave function - Application to Cl2O2

    NASA Technical Reports Server (NTRS)

    Rendell, Alistair P.; Lee, Timothy J.

    1991-01-01

    The analytic energy gradient for the single and double excitation coupled-cluster (CCSD) wave function has been reformulated and implemented in a new set of programs. The reformulated set of gradient equations have a smaller computational cost than any previously published. The iterative solution of the linear equations and the construction of the effective density matrices are fully vectorized, being based on matrix multiplications. The new method has been used to investigate the Cl2O2 molecule, which has recently been postulated as an important intermediate in the destruction of ozone in the stratosphere. In addition to reporting computational timings, the CCSD equilibrium geometries, harmonic vibrational frequencies, infrared intensities, and relative energetics of three isomers of Cl2O2 are presented.

  9. Singlet-paired coupled cluster theory for open shells.

    PubMed

    Gomez, John A; Henderson, Thomas M; Scuseria, Gustavo E

    2016-06-28

    Restricted single-reference coupled cluster theory truncated to single and double excitations accurately describes weakly correlated systems, but often breaks down in the presence of static or strong correlation. Good coupled cluster energies in the presence of degeneracies can be obtained by using a symmetry-broken reference, such as unrestricted Hartree-Fock, but at the cost of good quantum numbers. A large body of work has shown that modifying the coupled cluster ansatz allows for the treatment of strong correlation within a single-reference, symmetry-adapted framework. The recently introduced singlet-paired coupled cluster doubles (CCD0) method is one such model, which recovers correct behavior for strong correlation without requiring symmetry breaking in the reference. Here, we extend singlet-paired coupled cluster for application to open shells via restricted open-shell singlet-paired coupled cluster singles and doubles (ROCCSD0). The ROCCSD0 approach retains the benefits of standard coupled cluster theory and recovers correct behavior for strongly correlated, open-shell systems using a spin-preserving ROHF reference. PMID:27369507

  10. Single System Image Cluster Management

    Energy Science and Technology Software Center (ESTSC)

    2004-02-13

    Cluster computing has quickly proven itself to be a capable workhorse for a wide variety of production computing tasks; however, setting up and maintaining a cluster still requires significantly more effort than administrating just a single machine. As computing hardware descreases in price and cluster sizes grow, it is becoming increasingly important to manage clusters cleverly so that a system administration effort can "scale" as well. To ease the task of mananging many machines, administratorsmore » often deploy an environment that is homogeneous across all nodes of a cluster, and maintain a snapshot of the filesystem as a 'master image'. However due to operational, behavioral, and physical constraints, many nodes often require numerous deviations from the master image in order to operate as desired.« less

  11. An energy decomposition analysis for intermolecular interactions from an absolutely localized molecular orbital reference at the coupled-cluster singles and doubles level

    SciTech Connect

    Azar, R. Julian; Head-Gordon, Martin

    2012-01-14

    We propose a wave function-based method for the decomposition of intermolecular interaction energies into chemically-intuitive components, isolating both mean-field- and explicit correlation-level contributions. We begin by solving the locally-projected self-consistent field for molecular interactions equations for a molecular complex, obtaining an intramolecularly polarized reference of self-consistently optimized, absolutely-localized molecular orbitals (ALMOs), determined with the constraint that each fragment MO be composed only of atomic basis functions belonging to its own fragment. As explicit inter-electronic correlation is integral to an accurate description of weak forces underlying intermolecular interaction potentials, namely, coordinated fluctuations in weakly interacting electronic densities, we add dynamical correlation to the ALMO polarized reference at the coupled-cluster singles and doubles level, accounting for explicit dispersion and charge-transfer effects, which map naturally onto the cluster operator. We demonstrate the stability of energy components with basis set extension, follow the hydrogen bond-breaking coordinate in the C{sub s}-symmetry water dimer, decompose the interaction energies of dispersion-bound rare gas dimers and other van der Waals complexes, and examine charge transfer-dominated donor-acceptor interactions in borane adducts. We compare our results with high-level calculations and experiment when possible.

  12. Seniority zero pair coupled cluster doubles theory

    SciTech Connect

    Stein, Tamar; Henderson, Thomas M.; Scuseria, Gustavo E.

    2014-06-07

    Coupled cluster theory with single and double excitations accurately describes weak electron correlation but is known to fail in cases of strong static correlation. Fascinatingly, however, pair coupled cluster doubles (p-CCD), a simplified version of the theory limited to pair excitations that preserve the seniority of the reference determinant (i.e., the number of unpaired electrons), has mean field computational cost and is an excellent approximation to the full configuration interaction (FCI) of the paired space provided that the orbital basis defining the pairing scheme is adequately optimized. In previous work, we have shown that optimization of the pairing scheme in the seniority zero FCI leads to a very accurate description of static correlation. The same conclusion extends to p-CCD if the orbitals are optimized to make the p-CCD energy stationary. We here demonstrate these results with numerous examples. We also explore the contributions of different seniority sectors to the coupled cluster doubles (CCD) correlation energy using different orbital bases. We consider both Hartree-Fock and Brueckner orbitals, and the role of orbital localization. We show how one can pair the orbitals so that the role of the Brueckner orbitals at the CCD level is retained at the p-CCD level. Moreover, we explore ways of extending CCD to accurately describe strongly correlated systems.

  13. Coupled-cluster calculations of nucleonic matter

    NASA Astrophysics Data System (ADS)

    Hagen, G.; Papenbrock, T.; Ekström, A.; Wendt, K. A.; Baardsen, G.; Gandolfi, S.; Hjorth-Jensen, M.; Horowitz, C. J.

    2014-01-01

    Background: The equation of state (EoS) of nucleonic matter is central for the understanding of bulk nuclear properties, the physics of neutron star crusts, and the energy release in supernova explosions. Because nuclear matter exhibits a finely tuned saturation point, its EoS also constrains nuclear interactions. Purpose: This work presents coupled-cluster calculations of infinite nucleonic matter using modern interactions from chiral effective field theory (EFT). It assesses the role of correlations beyond particle-particle and hole-hole ladders, and the role of three-nucleon forces (3NFs) in nuclear matter calculations with chiral interactions. Methods: This work employs the optimized nucleon-nucleon (NN) potential NNLOopt at next-to-next-to leading order, and presents coupled-cluster computations of the EoS for symmetric nuclear matter and neutron matter. The coupled-cluster method employs up to selected triples clusters and the single-particle space consists of a momentum-space lattice. We compare our results with benchmark calculations and control finite-size effects and shell oscillations via twist-averaged boundary conditions. Results: We provide several benchmarks to validate the formalism and show that our results exhibit a good convergence toward the thermodynamic limit. Our calculations agree well with recent coupled-cluster results based on a partial wave expansion and particle-particle and hole-hole ladders. For neutron matter at low densities, and for simple potential models, our calculations agree with results from quantum Monte Carlo computations. While neutron matter with interactions from chiral EFT is perturbative, symmetric nuclear matter requires nonperturbative approaches. Correlations beyond the standard particle-particle ladder approximation yield non-negligible contributions. The saturation point of symmetric nuclear matter is sensitive to the employed 3NFs and the employed regularization scheme. 3NFs with nonlocal cutoffs exhibit a

  14. Analytic evaluation of energy gradients for the singles and doubles coupled cluster method including perturbative triple excitations: Theory and applications to FOOF and Cr2

    NASA Astrophysics Data System (ADS)

    Scuseria, Gustavo E.

    1991-01-01

    The analytic energy gradient for the singles and doubles coupled cluster method including a perturbative correction due to triple excitations [CCSD(T)] is formulated and computationally implemented. Encouraged by the recent success in reproducing the experimental equilibrium structure and vibrational frequencies of ozone, the new CCSD(T) gradient method is tested with two other ``difficult'' quantum chemistry problems: FOOF and Cr2. With the largest basis set employed in this work [triple zeta plus two sets of polarization functions (TZ2Pf)] at the CCSD(T) level of theory, the predictions for the O-O and O-F bond lengths in FOOF are 1.218 and 1.589 Å, respectively. These figures are in good agreement with the experimental values 1.216 and 1.575 Å. Based on CCSD calculations with even larger basis sets, it is concluded that the error of 0.014 Å in the O-F bond length at the TZ2Pf/CCSD(T) level of theory is due to the remaining basis set deficiency. On the other hand, the CCSD(T) prediction for the equilibrium bond length of Cr2 (1.604 Å), obtained with a large (10s8p3d2f1g) basis set capable of achieving the Hartree-Fock limit, is still 0.075 Å shorter than experiment, clearly indicating the importance of higher than connected triple excitations in a single-reference treatment of this particular problem.

  15. Toward open-shell nuclei with coupled-cluster theory

    SciTech Connect

    Jansen, G. R.; Hjorth-Jensen, M.; Hagen, G.; Papenbrock, T.

    2011-05-15

    We develop a method based on equation-of-motion coupled-cluster theory to describe properties of open-shell nuclei with A{+-}2 nucleons outside a closed shell. We perform proof-of-principle calculations for the ground states of the helium isotopes {sup 3-6}He and the first excited 2{sup +} state in {sup 6}He. The comparison with exact results from matrix diagonalization in small model spaces demonstrates the accuracy of the coupled-cluster methods. Three-particle-one-hole excitations of {sup 4}He play an important role for the accurate description of {sup 6}He. For the open-shell nucleus {sup 6}He, the computational cost of the method is comparable with the coupled-cluster singles-and-doubles approximation while its accuracy is similar to the coupled-cluster with singles, doubles, and triples excitations.

  16. Equation-of-motion coupled cluster perturbation theory revisited

    SciTech Connect

    Eriksen, Janus J. Jørgensen, Poul; Olsen, Jeppe; Gauss, Jürgen

    2014-05-07

    The equation-of-motion coupled cluster (EOM-CC) framework has been used for deriving a novel series of perturbative corrections to the coupled cluster singles and doubles energy that formally converges towards the full configuration interaction energy limit. The series is based on a Møller-Plesset partitioning of the Hamiltonian and thus size extensive at any order in the perturbation, thereby remedying the major deficiency inherent to previous perturbation series based on the EOM-CC ansatz.

  17. Complex-scaled equation-of-motion coupled-cluster method with single and double substitutions for autoionizing excited states: Theory, implementation, and examples

    SciTech Connect

    Bravaya, Ksenia B.; Zuev, Dmitry; Epifanovsky, Evgeny; Krylov, Anna I.

    2013-03-28

    Theory and implementation of complex-scaled variant of equation-of-motion coupled-cluster method for excitation energies with single and double substitutions (EOM-EE-CCSD) is presented. The complex-scaling formalism extends the EOM-EE-CCSD model to resonance states, i.e., excited states that are metastable with respect to electron ejection. The method is applied to Feshbach resonances in atomic systems (He, H{sup -}, and Be). The dependence of the results on one-electron basis set is quantified and analyzed. Energy decomposition and wave function analysis reveal that the origin of the dependence is in electron correlation, which is essential for the lifetime of Feshbach resonances. It is found that one-electron basis should be sufficiently flexible to describe radial and angular electron correlation in a balanced fashion and at different values of the scaling parameter, {theta}. Standard basis sets that are optimized for not-complex-scaled calculations ({theta} = 0) are not sufficiently flexible to describe the {theta}-dependence of the wave functions even when heavily augmented by additional sets.

  18. Third-order Douglas-Kroll Relativistic Coupled-Cluster Theory through Connected Single, Double, Triple, and Quadruple Substitutions: Applications to Diatomic and Triatomic Hydrides

    SciTech Connect

    Hirata, So; Yanai, Takeshi; De Jong, Wibe A.; Nakajima, Takahito; Hirao, Kimihiko

    2004-02-15

    Coupled-cluster methods including through and up to the connected single, double, triple, and quadruple substitutions (CCSD, CCSDT, and CCSDTQ) have been automatically derived and implemented for sequential and parallel executions for use in conjunction with a one-component third-order Douglas-Kroll (DK3) approximation for relativistic corrections. A combination of the converging electron-correlation methods, the accurate relativistic reference wave functions, and the use of systematic basis sets tailored to the relativistic approximation has been shown to predict the experimental singlet-triplet separations within 0.02 eV (0.5 kcal/mol) for five triatomic hydrides (CH2, NH2+, SiH2, PH2+, and AsH2+), the experimental bond lengths within 0.002 angstroms, rotational constants within 0.02 cm-1, vibration-rotation constants within 0.01 cm-1, centrifugal distortion constants within 2 %, harmonic vibration frequencies within 9 cm-1 (0.4 %), anharmonic vibrational constants within 2 cm-1, and dissociation energies within 0.03 eV (0.8 kcal/mol) for twenty diatomic hydrides (BH, CH, NH, OH, FH, AlH, SiH, PH, SH, ClH, GaH, GeH, AsH, SeH, BrH, InH, SnH, SbH, TeH, and IH) containing main-group elements across the second through fifth periods of the periodic table. In these calculations, spin-orbit effects on dissociation energies, which were assumed to be additive, were estimated from the measured spin-orbit coupling constants of atoms and diatomic molecules, and an electronic energy in the complete-basis-set, complete-electron-correlation limit has been extrapolated by the formula which was in turn based on the exponential-Gaussian extrapolation formula of the basis set dependence.

  19. Ab initio Bogoliubov coupled cluster theory

    NASA Astrophysics Data System (ADS)

    Signoracci, Angelo; Hagen, Gaute; Duguet, Thomas

    2014-09-01

    Coupled cluster (CC) theory has become a standard method in nuclear theory for realistic ab initio calculations of medium mass nuclei, but remains limited by its requirement of a Slater determinant reference state which reasonably approximates the nuclear system of interest. Extensions of the method, such as equation-of-motion CC, permit the calculation of nuclei with one or two nucleons added or removed from a doubly magic core, yet still only a few dozen nuclei are accessible with modern computational restrictions. In order to extend the applicability of ab initio methods to open-shell systems, the superfluid nature of nuclei must be taken into account. By utilizing Bogoliubov algebra and employing spontaneous symmetry breaking with respect to particle number conservation, superfluid systems can be treated by a single reference state. An ab initio theory to include correlations on top of a Bogoliubov reference state has been developed in the guise of standard CC theory. The formalism and first results of this Bogoliubov coupled cluster theory will be presented to demonstrate the applicability of the method.

  20. Multi-level coupled cluster theory

    SciTech Connect

    Myhre, Rolf H.; Koch, Henrik; Sánchez de Merás, Alfredo M. J.

    2014-12-14

    We present a general formalism where different levels of coupled cluster theory can be applied to different parts of the molecular system. The system is partitioned into subsystems by Cholesky decomposition of the one-electron Hartree-Fock density matrix. In this way the system can be divided across chemical bonds without discontinuities arising. The coupled cluster wave function is defined in terms of cluster operators for each part and these are determined from a set of coupled equations. The total wave function fulfills the Pauli-principle across all borders and levels of electron correlation. We develop the associated response theory for this multi-level coupled cluster theory and present proof of principle applications. The formalism is an essential tool in order to obtain size-intensive complexity in the calculation of local molecular properties.

  1. Third-order Douglas-Kroll relativistic coupled-cluster theory through connected single, double, triple, and quadruple substitutions: Applications to diatomic and triatomic hydrides

    NASA Astrophysics Data System (ADS)

    Hirata, So; Yanai, Takeshi; de Jong, Wibe A.; Nakajima, Takahito; Hirao, Kimihiko

    2004-02-01

    Coupled-cluster methods including through and up to the connected single, double, triple, and quadruple substitutions have been derived and implemented automatically for sequential and parallel executions by an algebraic and symbolic manipulation program TCE (TENSOR CONTRACTION ENGINE) for use in conjunction with a one-component third-order Douglas-Kroll approximation for relativistic corrections. A combination of the converging electron-correlation methods, the accurate relativistic reference wave functions, and the use of systematic basis sets tailored to the relativistic approximation has been shown to predict the experimental singlet-triplet separations within 0.02 eV (0.5 kcal/mol) for five triatomic hydrides (CH2, NH2+, SiH2, PH2+, and AsH2+), the experimental bond lengths (re or r0) within 0.002 Å, rotational constants (Be or B0) within 0.02 cm-1, vibration-rotation constants (αe) within 0.01 cm-1, centrifugal distortion constants (De) within 2%, harmonic vibration frequencies (ωe) within 8 cm-1 (0.4%), anharmonic vibrational constants (xωe) within 2 cm-1, and dissociation energies (D00) within 0.02 eV (0.4 kcal/mol) for twenty diatomic hydrides (BH, CH, NH, OH, FH, AlH, SiH, PH, SH, ClH, GaH, GeH, AsH, SeH, BrH, InH, SnH, SbH, TeH, and IH) containing main-group elements across the second through fifth rows of the periodic table. In these calculations, spin-orbit effects on dissociation energies, which were assumed to be additive, were estimated from the measured spin-orbit coupling constants of atoms and diatomic molecules, and an electronic energy in the complete-basis-set, complete-electron-correlation limit has been extrapolated in two ways to verify the robustness of the results: One assuming Gaussian-exponential dependence of total energies on double through quadruple ζ basis sets and the other assuming n-3 dependence of correlation energies on double through quintuple ζ basis sets.

  2. Combining coupled cluster and perturbation theory

    NASA Astrophysics Data System (ADS)

    Nooijen, Marcel

    1999-12-01

    Single reference coupled cluster (CC) singles and doubles theory is combined with low-order perturbation theory (PT) to treat ground state electron correlation. Two variants of the general scheme are discussed that differ in the type of amplitudes that are approximated perturbatively and which are treated to infinite order. The combined CC/PT methods to include ground state correlation are merged with equation-of-motion (EOM) and similarity transformed EOM methods to describe excitation spectra of the highly correlated s-tetrazine, MnO4- and Ni(CO)4 systems. It is shown that the computationally efficient CC/PT schemes can reproduce full CCSD results even if perturbation theory by itself is a very poor approximation, as is the case for many transition metal compounds. In a second test CC/PT is applied to determine ground state equilibrium molecular structures and harmonic vibrational frequencies for a set of small molecules. Using either variant of CC/PT, full CCSD geometries are easily recovered, while vibrational frequencies can be more sensitive to details of the approximation.

  3. Coupled-cluster computations of atomic nuclei.

    PubMed

    Hagen, G; Papenbrock, T; Hjorth-Jensen, M; Dean, D J

    2014-09-01

    In the past decade, coupled-cluster theory has seen a renaissance in nuclear physics, with computations of neutron-rich and medium-mass nuclei. The method is efficient for nuclei with product-state references, and it describes many aspects of weakly bound and unbound nuclei. This report reviews the technical and conceptual developments of this method in nuclear physics, and the results of coupled-cluster calculations for nucleonic matter, and for exotic isotopes of helium, oxygen, calcium, and some of their neighbors. PMID:25222372

  4. Coarse-Grained Clustering Dynamics of Heterogeneously Coupled Neurons.

    PubMed

    Moon, Sung Joon; Cook, Katherine A; Rajendran, Karthikeyan; Kevrekidis, Ioannis G; Cisternas, Jaime; Laing, Carlo R

    2015-12-01

    The formation of oscillating phase clusters in a network of identical Hodgkin-Huxley neurons is studied, along with their dynamic behavior. The neurons are synaptically coupled in an all-to-all manner, yet the synaptic coupling characteristic time is heterogeneous across the connections. In a network of N neurons where this heterogeneity is characterized by a prescribed random variable, the oscillatory single-cluster state can transition-through [Formula: see text] (possibly perturbed) period-doubling and subsequent bifurcations-to a variety of multiple-cluster states. The clustering dynamic behavior is computationally studied both at the detailed and the coarse-grained levels, and a numerical approach that can enable studying the coarse-grained dynamics in a network of arbitrarily large size is suggested. Among a number of cluster states formed, double clusters, composed of nearly equal sub-network sizes are seen to be stable; interestingly, the heterogeneity parameter in each of the double-cluster components tends to be consistent with the random variable over the entire network: Given a double-cluster state, permuting the dynamical variables of the neurons can lead to a combinatorially large number of different, yet similar "fine" states that appear practically identical at the coarse-grained level. For weak heterogeneity we find that correlations rapidly develop, within each cluster, between the neuron's "identity" (its own value of the heterogeneity parameter) and its dynamical state. For single- and double-cluster states we demonstrate an effective coarse-graining approach that uses the Polynomial Chaos expansion to succinctly describe the dynamics by these quickly established "identity-state" correlations. This coarse-graining approach is utilized, within the equation-free framework, to perform efficient computations of the neuron ensemble dynamics. PMID:26458901

  5. Photoionization cross section by Stieltjes imaging applied to coupled cluster Lanczos pseudo-spectra

    NASA Astrophysics Data System (ADS)

    Cukras, Janusz; Coriani, Sonia; Decleva, Piero; Christiansen, Ove; Norman, Patrick

    2013-09-01

    A recently implemented asymmetric Lanczos algorithm for computing (complex) linear response functions within the coupled cluster singles (CCS), coupled cluster singles and iterative approximate doubles (CC2), and coupled cluster singles and doubles (CCSD) is coupled to a Stieltjes imaging technique in order to describe the photoionization cross section of atoms and molecules, in the spirit of a similar procedure recently proposed by Averbukh and co-workers within the Algebraic Diagrammatic Construction approach. Pilot results are reported for the atoms He, Ne, and Ar and for the molecules H2, H2O, NH3, HF, CO, and CO2.

  6. Photoionization cross section by Stieltjes imaging applied to coupled cluster Lanczos pseudo-spectra

    SciTech Connect

    Cukras, Janusz; Coriani, Sonia; Decleva, Piero; Christiansen, Ove; Norman, Patrick

    2013-09-07

    A recently implemented asymmetric Lanczos algorithm for computing (complex) linear response functions within the coupled cluster singles (CCS), coupled cluster singles and iterative approximate doubles (CC2), and coupled cluster singles and doubles (CCSD) is coupled to a Stieltjes imaging technique in order to describe the photoionization cross section of atoms and molecules, in the spirit of a similar procedure recently proposed by Averbukh and co-workers within the Algebraic Diagrammatic Construction approach. Pilot results are reported for the atoms He, Ne, and Ar and for the molecules H{sub 2}, H{sub 2}O, NH{sub 3}, HF, CO, and CO{sub 2}.

  7. Seniority-based coupled cluster theory

    SciTech Connect

    Henderson, Thomas M.; Scuseria, Gustavo E.; Bulik, Ireneusz W.; Stein, Tamar

    2014-12-28

    Doubly occupied configuration interaction (DOCI) with optimized orbitals often accurately describes strong correlations while working in a Hilbert space much smaller than that needed for full configuration interaction. However, the scaling of such calculations remains combinatorial with system size. Pair coupled cluster doubles (pCCD) is very successful in reproducing DOCI energetically, but can do so with low polynomial scaling (N{sup 3}, disregarding the two-electron integral transformation from atomic to molecular orbitals). We show here several examples illustrating the success of pCCD in reproducing both the DOCI energy and wave function and show how this success frequently comes about. What DOCI and pCCD lack are an effective treatment of dynamic correlations, which we here add by including higher-seniority cluster amplitudes which are excluded from pCCD. This frozen pair coupled cluster approach is comparable in cost to traditional closed-shell coupled cluster methods with results that are competitive for weakly correlated systems and often superior for the description of strongly correlated systems.

  8. Seniority-based coupled cluster theory

    NASA Astrophysics Data System (ADS)

    Henderson, Thomas M.; Bulik, Ireneusz W.; Stein, Tamar; Scuseria, Gustavo E.

    2014-12-01

    Doubly occupied configuration interaction (DOCI) with optimized orbitals often accurately describes strong correlations while working in a Hilbert space much smaller than that needed for full configuration interaction. However, the scaling of such calculations remains combinatorial with system size. Pair coupled cluster doubles (pCCD) is very successful in reproducing DOCI energetically, but can do so with low polynomial scaling (N3, disregarding the two-electron integral transformation from atomic to molecular orbitals). We show here several examples illustrating the success of pCCD in reproducing both the DOCI energy and wave function and show how this success frequently comes about. What DOCI and pCCD lack are an effective treatment of dynamic correlations, which we here add by including higher-seniority cluster amplitudes which are excluded from pCCD. This frozen pair coupled cluster approach is comparable in cost to traditional closed-shell coupled cluster methods with results that are competitive for weakly correlated systems and often superior for the description of strongly correlated systems.

  9. Which Ab Initio Wave Function Methods Are Adequate for Quantitative Calculations of the Energies of Biradicals? The Performance of Coupled-Cluster and Multi-Reference Methods Along a Single-Bond Dissociation Coordinate

    SciTech Connect

    Yang, Ke; Jalan, Amrit; Green, William H.; Truhlar, Donald G.

    2013-01-08

    We examine the accuracy of single-reference and multireference correlated wave function methods for predicting accurate energies and potential energy curves of biradicals. The biradicals considered are intermediate species along the bond dissociation coordinates for breaking the F-F bond in F2, the O-O bond in H2O2, and the C-C bond in CH3CH3. We apply a host of single-reference and multireference approximations in a consistent way to the same cases to provide a better assessment of their relative accuracies than was previously possible. The most accurate method studied is coupled cluster theory with all connected excitations through quadruples, CCSDTQ. Without explicit quadruple excitations, the most accurate potential energy curves are obtained by the single-reference RCCSDt method, followed, in order of decreasing accuracy, by UCCSDT, RCCSDT, UCCSDt, seven multireference methods, including perturbation theory, configuration interaction, and coupled-cluster methods (with MRCI+Q being the best and Mk-MR-CCSD the least accurate), four CCSD(T) methods, and then CCSD.

  10. Communication: A simplified coupled-cluster Lagrangian for polarizable embedding.

    PubMed

    Krause, Katharina; Klopper, Wim

    2016-01-28

    A simplified coupled-cluster Lagrangian, which is linear in the Lagrangian multipliers, is proposed for the coupled-cluster treatment of a quantum mechanical system in a polarizable environment. In the simplified approach, the amplitude equations are decoupled from the Lagrangian multipliers and the energy obtained from the projected coupled-cluster equation corresponds to a stationary point of the Lagrangian. PMID:26827193

  11. A coupled-cluster study of photodetachment cross sections of closed-shell anions

    SciTech Connect

    Cukras, Janusz; Decleva, Piero; Coriani, Sonia

    2014-11-07

    We investigate the performance of Stieltjes Imaging applied to Lanczos pseudo-spectra generated at the coupled cluster singles and doubles, coupled cluster singles and approximate iterative doubles and coupled cluster singles levels of theory in modeling the photodetachment cross sections of the closed shell anions H{sup −}, Li{sup −}, Na{sup −}, F{sup −}, Cl{sup −}, and OH{sup −}. The accurate description of double excitations is found to play a much more important role than in the case of photoionization of neutral species.

  12. Computation of expectation values from vibrational coupled-cluster at the two-mode coupling level

    NASA Astrophysics Data System (ADS)

    Zoccante, Alberto; Seidler, Peter; Christiansen, Ove

    2011-04-01

    In this work we show how the vibrational coupled-cluster method at the two-mode coupling level can be used to calculate zero-point vibrational averages of properties. A technique is presented, where any expectation value can be calculated using a single set of Lagrangian multipliers computed solving iteratively a single linear set of equations. Sample calculations are presented which show that the resulting algorithm scales only with the third power of the number of modes, therefore making large systems accessible. Moreover, we present applications to water, pyrrole, and para-nitroaniline.

  13. Nonlocal correlations induced by Hund's coupling: A cluster DMFT study

    NASA Astrophysics Data System (ADS)

    Nomura, Yusuke; Sakai, Shiro; Arita, Ryotaro

    2015-06-01

    We study spatial correlation effects in multiorbital systems, especially in a paramagnetic metallic state subject to Hund's coupling. We apply a cluster extension of the dynamical mean-field theory (DMFT) to the three-orbital Hubbard model away from half filling, where previous single-site DMFT studies revealed that local correlation effects caused by Hund's coupling bring about unusual strongly correlated metallic behaviors. We find that Hund's coupling significantly affects the nonlocal correlations too; it strongly modulates the electron distribution in the momentum space so as to make a momentum region almost half filled and hence strongly correlated. It leads to an anomalous electronic state distinct both from the Fermi liquid and the Mott insulator. We identify the mechanism of the anomalous state with the intersite ferromagnetic correlations induced by Hund's coupling.

  14. Approximating electronically excited states with equation-of-motion linear coupled-cluster theory

    SciTech Connect

    Byrd, Jason N. Rishi, Varun; Perera, Ajith; Bartlett, Rodney J.

    2015-10-28

    A new perturbative approach to canonical equation-of-motion coupled-cluster theory is presented using coupled-cluster perturbation theory. A second-order Møller-Plesset partitioning of the Hamiltonian is used to obtain the well known equation-of-motion many-body perturbation theory equations and two new equation-of-motion methods based on the linear coupled-cluster doubles and linear coupled-cluster singles and doubles wavefunctions. These new methods are benchmarked against very accurate theoretical and experimental spectra from 25 small organic molecules. It is found that the proposed methods have excellent agreement with canonical equation-of-motion coupled-cluster singles and doubles state for state orderings and relative excited state energies as well as acceptable quantitative agreement for absolute excitation energies compared with the best estimate theory and experimental spectra.

  15. Ab initio quantum dynamics using coupled-cluster.

    PubMed

    Kvaal, Simen

    2012-05-21

    The curse of dimensionality (COD) limits the current state-of-the-art ab initio propagation methods for non-relativistic quantum mechanics to relatively few particles. For stationary structure calculations, the coupled-cluster (CC) method overcomes the COD in the sense that the method scales polynomially with the number of particles while still being size-consistent and extensive. We generalize the CC method to the time domain while allowing the single-particle functions to vary in an adaptive fashion as well, thereby creating a highly flexible, polynomially scaling approximation to the time-dependent Schrödinger equation. The method inherits size-consistency and extensivity from the CC method. The method is dubbed orbital-adaptive time-dependent coupled-cluster, and is a hierarchy of approximations to the now standard multi-configurational time-dependent Hartree method for fermions. A numerical experiment is also given. PMID:22612082

  16. Communication: A reduced-space algorithm for the solution of the complex linear response equations used in coupled cluster damped response theory

    NASA Astrophysics Data System (ADS)

    Kauczor, Joanna; Norman, Patrick; Christiansen, Ove; Coriani, Sonia

    2013-12-01

    We present a reduced-space algorithm for solving the complex (damped) linear response equations required to compute the complex linear response function for the hierarchy of methods: coupled cluster singles, coupled cluster singles and iterative approximate doubles, and coupled cluster singles and doubles. The solver is the keystone element for the development of damped coupled cluster response methods for linear and nonlinear effects in resonant frequency regions.

  17. Optimized coordinates in vibrational coupled cluster calculations

    SciTech Connect

    Thomsen, Bo; Christiansen, Ove; Yagi, Kiyoshi

    2014-04-21

    The use of variationally optimized coordinates, which minimize the vibrational self-consistent field (VSCF) ground state energy with respect to orthogonal transformations of the coordinates, has recently been shown to improve the convergence of vibrational configuration interaction (VCI) towards the exact full VCI [K. Yagi, M. Keçeli, and S. Hirata, J. Chem. Phys. 137, 204118 (2012)]. The present paper proposes an incorporation of optimized coordinates into the vibrational coupled cluster (VCC), which has in the past been shown to outperform VCI in approximate calculations where similar restricted state spaces are employed in VCI and VCC. An embarrassingly parallel algorithm for variational optimization of coordinates for VSCF is implemented and the resulting coordinates and potentials are introduced into a VCC program. The performance of VCC in optimized coordinates (denoted oc-VCC) is examined through pilot applications to water, formaldehyde, and a series of water clusters (dimer, trimer, and hexamer) by comparing the calculated vibrational energy levels with those of the conventional VCC in normal coordinates and VCI in optimized coordinates. For water clusters, in particular, oc-VCC is found to gain orders of magnitude improvement in the accuracy, exemplifying that the combination of optimized coordinates localized to each monomer with the size-extensive VCC wave function provides a supreme description of systems consisting of weakly interacting sub-systems.

  18. Explicitly correlated coupled-cluster theory with Brueckner orbitals.

    PubMed

    Tew, David P

    2016-08-21

    Brueckner orbitals are the optimal orbitals for use in F12 explicitly correlated coupled-cluster (CC) treatments. A novel approach, Brueckner coupled-cluster doubles with perturbative triples BCCD(T)(F12*) is presented that avoids the expensive re-evaluation of F12 integrals throughout the orbital optimisation and includes a newly derived basis set correction to the Brueckner reference energy. The generalisation of F12 theory to arbitrary non-Hartree-Fock references and to Fock operators that include scalar relativistic effects is also presented. The performance of the new Brueckner F12 method is assessed for a test set of 50 open- and closed-shell reactions and for the ionisation potentials and electron affinities (EAs) of the first-row transition metal atoms. Benchmark basis set limit coupled-cluster singles, doubles and perturbative triples (CCSD(T)) and BCCD(T) values are reported for all energies in the test sets. BCCD(T)(F12*) performs systematically better than CCSD(T)(F12*) for electron affinities where orbital relaxation effects are significant. PMID:27544083

  19. Developments in stochastic coupled cluster theory: The initiator approximation and application to the uniform electron gas.

    PubMed

    Spencer, James S; Thom, Alex J W

    2016-02-28

    We describe further details of the stochastic coupled cluster method and a diagnostic of such calculations, the shoulder height, akin to the plateau found in full configuration interaction quantum Monte Carlo. We describe an initiator modification to stochastic coupled cluster theory and show that initiator calculations can at times be extrapolated to the unbiased limit. We apply this method to the 3D 14-electron uniform electron gas and present complete basis set limit values of the coupled cluster singles and doubles (CCSD) and previously unattainable coupled cluster singles and doubles with perturbative triples (CCSDT) correlation energies for up to r(s) = 2, showing a requirement to include triple excitations to accurately calculate energies at high densities. PMID:26931682

  20. Explicitly correlated ring-coupled-cluster-doubles theory

    NASA Astrophysics Data System (ADS)

    Hehn, Anna-Sophia; Tew, David P.; Klopper, Wim

    2015-05-01

    The connection between the random-phase approximation and the ring-coupled-cluster-doubles method bridges the gap between density-functional and wave-function theories and the importance of the random-phase approximation lies in both its broad applicability and this linking role in electronic-structure theory. In this contribution, we present an explicitly correlated approach to the random-phase approximation, based on the direct ring-coupled-cluster-doubles ansatz, which overcomes the problem of slow basis-set convergence, inherent to the random-phase approximation. Benchmark results for a test set of 106 molecules and a selection of 10 organic complexes from the S22 test set demonstrate that convergence to within 99% of the basis-set limit is reached for triple-zeta basis sets for atomisation energies, while quadruple-zeta basis sets are required for interaction energies. Corrections due to single excitations into the complementary auxiliary space reduce the basis-set incompleteness error by one order of magnitude, while contributions due to the coupling of conventional and geminal amplitudes are in general negligible. We find that a non-iterative explicitly correlated correction to first order in perturbation theory exhibits the best ratio of accuracy to computational cost.

  1. Explicitly correlated ring-coupled-cluster-doubles theory.

    PubMed

    Hehn, Anna-Sophia; Tew, David P; Klopper, Wim

    2015-05-21

    The connection between the random-phase approximation and the ring-coupled-cluster-doubles method bridges the gap between density-functional and wave-function theories and the importance of the random-phase approximation lies in both its broad applicability and this linking role in electronic-structure theory. In this contribution, we present an explicitly correlated approach to the random-phase approximation, based on the direct ring-coupled-cluster-doubles ansatz, which overcomes the problem of slow basis-set convergence, inherent to the random-phase approximation. Benchmark results for a test set of 106 molecules and a selection of 10 organic complexes from the S22 test set demonstrate that convergence to within 99% of the basis-set limit is reached for triple-zeta basis sets for atomisation energies, while quadruple-zeta basis sets are required for interaction energies. Corrections due to single excitations into the complementary auxiliary space reduce the basis-set incompleteness error by one order of magnitude, while contributions due to the coupling of conventional and geminal amplitudes are in general negligible. We find that a non-iterative explicitly correlated correction to first order in perturbation theory exhibits the best ratio of accuracy to computational cost. PMID:26001446

  2. Explicitly correlated ring-coupled-cluster-doubles theory

    SciTech Connect

    Hehn, Anna-Sophia; Klopper, Wim; Tew, David P.

    2015-05-21

    The connection between the random-phase approximation and the ring-coupled-cluster-doubles method bridges the gap between density-functional and wave-function theories and the importance of the random-phase approximation lies in both its broad applicability and this linking role in electronic-structure theory. In this contribution, we present an explicitly correlated approach to the random-phase approximation, based on the direct ring-coupled-cluster-doubles ansatz, which overcomes the problem of slow basis-set convergence, inherent to the random-phase approximation. Benchmark results for a test set of 106 molecules and a selection of 10 organic complexes from the S22 test set demonstrate that convergence to within 99% of the basis-set limit is reached for triple-zeta basis sets for atomisation energies, while quadruple-zeta basis sets are required for interaction energies. Corrections due to single excitations into the complementary auxiliary space reduce the basis-set incompleteness error by one order of magnitude, while contributions due to the coupling of conventional and geminal amplitudes are in general negligible. We find that a non-iterative explicitly correlated correction to first order in perturbation theory exhibits the best ratio of accuracy to computational cost.

  3. Cluster synchronization induced by one-node clusters in networks with asymmetric negative couplings

    SciTech Connect

    Zhang, Jianbao; Ma, Zhongjun; Zhang, Gang

    2013-12-15

    This paper deals with the problem of cluster synchronization in networks with asymmetric negative couplings. By decomposing the coupling matrix into three matrices, and employing Lyapunov function method, sufficient conditions are derived for cluster synchronization. The conditions show that the couplings of multi-node clusters from one-node clusters have beneficial effects on cluster synchronization. Based on the effects of the one-node clusters, an effective and universal control scheme is put forward for the first time. The obtained results may help us better understand the relation between cluster synchronization and cluster structures of the networks. The validity of the control scheme is confirmed through two numerical simulations, in a network with no cluster structure and in a scale-free network.

  4. Circuit electromechanics with single photon strong coupling

    SciTech Connect

    Xue, Zheng-Yuan Yang, Li-Na; Zhou, Jian

    2015-07-13

    In circuit electromechanics, the coupling strength is usually very small. Here, replacing the capacitor in circuit electromechanics by a superconducting flux qubit, we show that the coupling among the qubit and the two resonators can induce effective electromechanical coupling which can attain the strong coupling regime at the single photon level with feasible experimental parameters. We use dispersive couplings among two resonators and the qubit while the qubit is also driven by an external classical field. These couplings form a three-wave mixing configuration among the three elements where the qubit degree of freedom can be adiabatically eliminated, and thus results in the enhanced coupling between the two resonators. Therefore, our work constitutes the first step towards studying quantum nonlinear effect in circuit electromechanics.

  5. Ab-Initio Coupled-Cluster Study of {sup 16}O

    SciTech Connect

    Wloch, M.; Gour, J.R.; Kowalski, K.; Piecuch, P.; Dean, D.J.; Hjorth-Jensen, M.; Papenbrock, T.

    2005-06-03

    We report converged results for the ground and excited states and matter density of {sup 16}O using realistic two-body nucleon-nucleon interactions and coupled-cluster methods and algorithms developed in quantum chemistry. Most of the binding is obtained with the coupled-cluster singles and doubles approach. Additional binding due to three-body clusters (triples) is minimal. The coupled-cluster method with singles and doubles provides a good description of the matter density, charge radius, charge form factor, and excited states of a one-particle, one-hole nature, but it cannot describe the first-excited 0{sup +} state. Incorporation of triples has no effect on the latter finding.

  6. Multireference coupled-cluster approaches to excited states

    NASA Astrophysics Data System (ADS)

    Paldus, Josef; Li, Xiangzhu

    2015-01-01

    We review our recent work on multireference (MR) coupled-cluster (CC) methodology, namely (i) the idea of external corrections that are essential for the so-called reduced MR (RMR) CCSD and RMR-CCSD(T) methods at the single-reference (SR) level and for (N,M)-CCSD at the MR level, and (ii) the concept of the so-called C-conditions for the internal cluster amplitudes at the genuine MR CC state universal (SU) level. The latter concept enables the use of general model spaces (GMSs) while preserving the intermediate normalization and can be employed in any MR CC method that is based on the SU cluster Ansatz of Jeziorski and Monkhorst, including state-selective (SS) approaches, such as the Mukherjee MkCCSD and Brillouin-Wigner BW-CC methods. The performance of the RMR-CCSD(T), GMS-SU-CCSD, GMS-MkCCSD, and (N,M)-CCSD approaches is illustrated on a few typical examples.

  7. Coupled cluster algorithms for networks of shared memory parallel processors

    NASA Astrophysics Data System (ADS)

    Bentz, Jonathan L.; Olson, Ryan M.; Gordon, Mark S.; Schmidt, Michael W.; Kendall, Ricky A.

    2007-05-01

    As the popularity of using SMP systems as the building blocks for high performance supercomputers increases, so too increases the need for applications that can utilize the multiple levels of parallelism available in clusters of SMPs. This paper presents a dual-layer distributed algorithm, using both shared-memory and distributed-memory techniques to parallelize a very important algorithm (often called the "gold standard") used in computational chemistry, the single and double excitation coupled cluster method with perturbative triples, i.e. CCSD(T). The algorithm is presented within the framework of the GAMESS [M.W. Schmidt, K.K. Baldridge, J.A. Boatz, S.T. Elbert, M.S. Gordon, J.J. Jensen, S. Koseki, N. Matsunaga, K.A. Nguyen, S. Su, T.L. Windus, M. Dupuis, J.A. Montgomery, General atomic and molecular electronic structure system, J. Comput. Chem. 14 (1993) 1347-1363]. (General Atomic and Molecular Electronic Structure System) program suite and the Distributed Data Interface [M.W. Schmidt, G.D. Fletcher, B.M. Bode, M.S. Gordon, The distributed data interface in GAMESS, Comput. Phys. Comm. 128 (2000) 190]. (DDI), however, the essential features of the algorithm (data distribution, load-balancing and communication overhead) can be applied to more general computational problems. Timing and performance data for our dual-level algorithm is presented on several large-scale clusters of SMPs.

  8. Delay-induced cluster patterns in coupled Cayley tree networks

    NASA Astrophysics Data System (ADS)

    Singh, A.; Jalan, S.

    2013-07-01

    We study effects of delay in diffusively coupled logistic maps on the Cayley tree networks. We find that smaller coupling values exhibit sensitiveness to value of delay, and lead to different cluster patterns of self-organized and driven types. Whereas larger coupling strengths exhibit robustness against change in delay values, and lead to stable driven clusters comprising nodes from last generation of the Cayley tree. Furthermore, introduction of delay exhibits suppression as well as enhancement of synchronization depending upon coupling strength values. To the end we discuss the importance of results to understand conflicts and cooperations observed in family business.

  9. Mutual Coupling for each Channel of Cluster Radioactivity

    NASA Astrophysics Data System (ADS)

    Huang, Yin; Zhang, Hong Fei

    2013-11-01

    Every kinds of cluster radioactivities have different radioactive features depending on their emitted clusters and daughters nuclei. Thus each decay process can be treated as a radioactive channel, and the channels can be coupled to each other. Therefore some channels are abated or strengthen due to the coupling effects. Here we attempt to find out a way to evaluate the influence of each channel, and then introduce a physical quantity Mi to express this effect.

  10. Single photons from dissipation in coupled cavities

    NASA Astrophysics Data System (ADS)

    Flayac, H.; Savona, V.

    2016-07-01

    We propose a single-photon source based on a pair of weakly nonlinear optical cavities subject to a one-directional dissipative coupling. When both cavities are driven by mutually coherent fields, sub-Poissonian light is generated in the target cavity even when the nonlinear energy per photon is much smaller than the dissipation rate. The sub-Poissonian character of the field holds over a delay measured by the inverse photon lifetime, as in the conventional photon blockade, thus allowing single-photon emission under pulsed excitation. We discuss a possible implementation of the dissipative coupling relevant to photonic platforms.

  11. Cluster synchronization modes in an ensemble of coupled chaotic oscillators

    NASA Astrophysics Data System (ADS)

    Belykh, Vladimir N.; Belykh, Igor V.; Mosekilde, Erik

    2001-03-01

    Considering systems of diffusively coupled identical chaotic oscillators, an effective method to determine the possible states of cluster synchronization and ensure their stability is presented. The method, which may find applications in communication engineering and other fields of science and technology, is illustrated through concrete examples of coupled biological cell models.

  12. Clustering in delay-coupled smooth and relaxational chemical oscillators

    NASA Astrophysics Data System (ADS)

    Blaha, Karen; Lehnert, Judith; Keane, Andrew; Dahms, Thomas; Hövel, Philipp; Schöll, Eckehard; Hudson, John L.

    2013-12-01

    We investigate cluster synchronization in networks of nonlinear systems with time-delayed coupling. Using a generic model for a system close to the Hopf bifurcation, we predict the order of appearance of different cluster states and their corresponding common frequencies depending upon coupling delay. We may tune the delay time in order to ensure the existence and stability of a specific cluster state. We qualitatively and quantitatively confirm these results in experiments with chemical oscillators. The experiments also exhibit strongly nonlinear relaxation oscillations as we increase the voltage, i.e., go further away from the Hopf bifurcation. In this regime, we find secondary cluster states with delay-dependent phase lags. These cluster states appear in addition to primary states with delay-independent phase lags observed near the Hopf bifurcation. Extending the theory on Hopf normal-form oscillators, we are able to account for realistic interaction functions, yielding good agreement with experimental findings.

  13. Combined coupled-cluster and many-body perturbation theories

    NASA Astrophysics Data System (ADS)

    Hirata, So; Fan, Peng-Dong; Auer, Alexander A.; Nooijen, Marcel; Piecuch, Piotr

    2004-12-01

    Various approximations combining coupled-cluster (CC) and many-body perturbation theories have been derived and implemented into the parallel execution programs that take into account the spin, spatial (real Abelian), and permutation symmetries and that are applicable to closed- and open-shell molecules. The implemented models range from the CCSD(T), CCSD[T], CCSD(2)T, CCSD(2)TQ, and CCSDT(2)Q methods to the completely renormalized (CR) CCSD(T) and CCSD[T] approaches, where CCSD (CCSDT) stands for the CC method with connected single and double (single, double, and triple) cluster operators, and subscripted or parenthesized 2, T, and Q indicate the perturbation order or the excitation ranks of the cluster operators included in the corrections. The derivation and computer implementation have been automated by the algebraic and symbolic manipulation program TENSOR CONTRACTION ENGINE (TCE). The TCE-synthesized subroutines generate the tensors with the highest excitation rank in a blockwise manner so that they need not be stored in their entirety, while enabling the efficient reuse of other precalculated intermediate tensors defined by prioritizing the memory optimization as well as operation minimization. Consequently, the overall storage requirements for the corrections due to connected triple and quadruple cluster operators scale as O(n4) and O(n6), respectively (n being a measure of the system size). For systems with modest multireference character of their wave functions, we found that the order of accuracy is CCSD

  14. NonIterative Corrections to Equation-of-Motion Coupled-Cluster Excited State Energies Based on the Reduced Method of Moments of coupled cluster equation

    SciTech Connect

    Kowalski, Karol; Valiev, Marat

    2008-05-27

    A new formalism closely related to the Method of Moment of Coupled-Cluster equations (MMCC) is obtained by embedding approximate coupled cluster (CC) or equation-of-motion CC (EOMCC) formalism into the formalism which uses cluster or excitation operators defined by excitation operators of higher rank with respect to a given approximation. Non-iterative corrections due to triples to the CC / EOMCC with singles and doubles (CCSD / EOMCCSD) reveal structural similarities to the CCSD(T) corrections for the ground state. Linked to our QM/MM module in NWChem this new algorithm is used to study the excited-state potential surfaces of C1₂O molecule in gas-phase and CC1₄ solution.

  15. Analytic evaluation of the nonadiabatic coupling vector between excited states using equation-of-motion coupled-cluster theory

    NASA Astrophysics Data System (ADS)

    Tajti, Attila; Szalay, Péter G.

    2009-09-01

    Theory and implementation for evaluation of the nonadiabatic coupling vector between excited electronic states described by equation-of-motion excitation energy coupled-cluster singles and doubles (EOMEE-CCSD) method is presented. Problems arising from the non-Hermitian nature of the theory are discussed in detail. The performance of the new approach is demonstrated by the nice agreement of the nonadiabatic coupling curves for LiH obtained at the EOMEE-CCSD and MR-CISD levels. Using the tools developed we also present a computational procedure to evaluate the interstate coupling constants used in vibronic coupling theories. As an application of this part of the implementation we present simulation of the electronic absorption spectrum of the pyrazine molecule within the linear vibronic coupling model.

  16. Note: Excited State Studies of Ozone using State-Specific Multireference Coupled Cluster Methods

    SciTech Connect

    Bhaskaran-Nair, Kiran; Kowalski, Karol

    2012-12-07

    Vertical excitation energies obtained with state-specific multi-reference coupled cluster (MRCC) methods are reported for the ozone molecule. Using state-specific MRCC non-iterative methods with singles, doubles, and non-iterative triples (MRCCSD(T)) we obtain 4.40 eV for the challenging doubly excited 21A1 state when using a reliable model space. This estimate is in good agreement with experiment (4.5 eV). We also compare our MRCC results with the excitation energies obtained with high-order equation-of-motion coupled cluster methods

  17. Report of a Workshop on Parallelization of Coupled Cluster Methods

    SciTech Connect

    Rodney J. Bartlett Erik Deumens

    2008-05-08

    The benchmark, ab initio quantum mechanical methods for molecular structure and spectra are now recognized to be coupled-cluster theory. To benefit from the transiiton to tera- and petascale computers, such coupled-cluster methods must be created to run in a scalable fashion. This Workshop, held as a aprt of the 48th annual Sanibel meeting, at St. Simns, Island, GA, addressed that issue. Representatives of all the principal scientific groups who are addressing this topic were in attendance, to exchange information about the problem and to identify what needs to be done in the future. This report summarized the conclusions of the workshop.

  18. ClusterSculptor: Software for Expert-Steered Classification of Single Particle Mass Spectra

    SciTech Connect

    Zelenyuk, Alla; Imre, Dan G.; Nam, Eun Ju; Han, Yiping; Mueller, Klaus

    2008-08-01

    To take full advantage of the vast amount of highly detailed data acquired by single particle mass spectrometers requires that the data be organized according to some rules that have the potential to be insightful. Most commonly statistical tools are used to cluster the individual particle mass spectra on the basis of their similarity. Cluster analysis is a powerful strategy for the exploration of high-dimensional data in the absence of a-priori hypotheses or data classification models, and the results of cluster analysis can then be used to form such models. More often than not, when examining the data clustering results we find that many clusters contain particles of different types and that many particles of one type end up in a number of separate clusters. Our experience with cluster analysis shows that we have a vast amount of non-compiled knowledge and intuition that should be brought to bear in this effort. We will present new software we call ClusterSculptor that provides comprehensive and intuitive framework to aid scientists in data classification. ClusterSculptor uses k-means as the overall clustering engine, but allows tuning its parameters interactively, based on a non-distorted compact visual presentation of the inherent characteristics of the data in high-dimensional space. ClusterSculptor provides all the tools necessary for a high-dimensional activity we call cluster sculpting. ClusterSculptor is designed to be coupled to SpectraMiner, our data mining and visualization software package. The data are first visualized with SpectraMiner and identified problems are exported to ClusterSculptor, where the user steers the reclassification and recombination of clusters of tens of thousands particle mass spectra in real-time. The resulting sculpted clusters can be then imported back into SpectraMiner. Here we will greatly improved single particle chemical speciation in an example of application of this new tool to a number of particle types of atmospheric

  19. Panic evacuation of single pedestrians and couples

    NASA Astrophysics Data System (ADS)

    Frank, G. A.; Dorso, C. O.

    2016-02-01

    Understanding the timing requirements for evacuation of people has focused primarily on independent pedestrians rather than pedestrians emotionally connected. However, the main statistical effects observed in crowds, the so-called “faster is slower”, “clever is not always better” and the “low visibility enhancement”, cannot explain the overall behavior of a crowd during an evacuation process when correlated pedestrians due to, for example feelings, are present. Our research addresses this issue and examines the statistical behavior of a mixture of individuals and couples during a (panic) escaping process. We found that the attractive feeling among couples plays an important role in the time delays during the evacuation of a single exit room.

  20. Coupled-Cluster Dynamic Polarizabilities Including Triple Excitations

    SciTech Connect

    Hammond, Jeffrey R.; De Jong, Wibe A.; Kowalski, Karol

    2008-06-10

    Dynamic polarizabilities for open- and closed-shell molecules were obtained using coupled-cluster (CC) linear response theory with full treatment of singles, doubles and triples (CCSDT-LR) with large basis sets utilizing the NWChem software suite. Using four approximate CC methods in conjunction with augmented cc-pVNZ basis sets, we are able to evaluate the convergence in both many-electron and one-electron spaces. For systems with primarily dynamic correlation, the results for CC3 and CCSDT are almost indistinguishable. For systems with more static correlation, the PS(T) approximation [J. Chem. Phs. 127, 164105 (2007) performs better that CC3. Additionally, the PS(T) approach separates the triples contribution to the poles of the response function from the triples amplitudes themselves, and demonstrates that the latter are less important than originally thought Lastly, our results show that the choice of reference (ROHF versus UHF) can have a significant impact on the accuracy of polarizabilities for open-shell systems.

  1. Coupled-cluster based basis sets for valence correlation calculations

    NASA Astrophysics Data System (ADS)

    Claudino, Daniel; Gargano, Ricardo; Bartlett, Rodney J.

    2016-03-01

    Novel basis sets are generated that target the description of valence correlation in atoms H through Ar. The new contraction coefficients are obtained according to the Atomic Natural Orbital (ANO) procedure from CCSD(T) (coupled-cluster singles and doubles with perturbative triples correction) density matrices starting from the primitive functions of Dunning et al. [J. Chem. Phys. 90, 1007 (1989); ibid. 98, 1358 (1993); ibid. 100, 2975 (1993)] (correlation consistent polarized valence X-tuple zeta, cc-pVXZ). The exponents of the primitive Gaussian functions are subject to uniform scaling in order to ensure satisfaction of the virial theorem for the corresponding atoms. These new sets, named ANO-VT-XZ (Atomic Natural Orbital Virial Theorem X-tuple Zeta), have the same number of contracted functions as their cc-pVXZ counterparts in each subshell. The performance of these basis sets is assessed by the evaluation of the contraction errors in four distinct computations: correlation energies in atoms, probing the density in different regions of space via (-3 ≤ n ≤ 3) in atoms, correlation energies in diatomic molecules, and the quality of fitting potential energy curves as measured by spectroscopic constants. All energy calculations with ANO-VT-QZ have contraction errors within "chemical accuracy" of 1 kcal/mol, which is not true for cc-pVQZ, suggesting some improvement compared to the correlation consistent series of Dunning and co-workers.

  2. Coupled-cluster based basis sets for valence correlation calculations.

    PubMed

    Claudino, Daniel; Gargano, Ricardo; Bartlett, Rodney J

    2016-03-14

    Novel basis sets are generated that target the description of valence correlation in atoms H through Ar. The new contraction coefficients are obtained according to the Atomic Natural Orbital (ANO) procedure from CCSD(T) (coupled-cluster singles and doubles with perturbative triples correction) density matrices starting from the primitive functions of Dunning et al. [J. Chem. Phys. 90, 1007 (1989); ibid. 98, 1358 (1993); ibid. 100, 2975 (1993)] (correlation consistent polarized valence X-tuple zeta, cc-pVXZ). The exponents of the primitive Gaussian functions are subject to uniform scaling in order to ensure satisfaction of the virial theorem for the corresponding atoms. These new sets, named ANO-VT-XZ (Atomic Natural Orbital Virial Theorem X-tuple Zeta), have the same number of contracted functions as their cc-pVXZ counterparts in each subshell. The performance of these basis sets is assessed by the evaluation of the contraction errors in four distinct computations: correlation energies in atoms, probing the density in different regions of space via ⟨r(n)⟩ (-3 ≤ n ≤ 3) in atoms, correlation energies in diatomic molecules, and the quality of fitting potential energy curves as measured by spectroscopic constants. All energy calculations with ANO-VT-QZ have contraction errors within "chemical accuracy" of 1 kcal/mol, which is not true for cc-pVQZ, suggesting some improvement compared to the correlation consistent series of Dunning and co-workers. PMID:26979680

  3. Coupled cluster calculations on TiO2 nanoclusters

    SciTech Connect

    Berardo, Enrico; Hu, Hanshi; Kowalski, Karol; Zwijnenburg, Martijn A.

    2013-08-14

    The excitation energies of the four lowest-lying singlet excited states of the TiO2 Ti2O4 and Ti3O6 clusters are calculated by a variety of different Equation-of-Motion Coupled Cluster (EOM-CC) approaches in order to obtain benchmark values for the optical excitations of titanium dioxide clusters. More specifically we investigate what is the effect of the inclusion of triple excitations "triples" in the (EOM-)CC scheme on the calculated excited states of those clusters. While for the monomer and dimer the inclusion of triples causes only a rigid shift in the excitation energies, in the case of the trimer the crossing of the interested states is observed. Coupled cluster approaches where triples are treated perturbatively were found to offer no advantage over EOM-CCSD, whereas the active-space methods (EOM-CCSDt(II/I)) proved to yield results very close to the full EOM-CCSDT, but at a much lower computational cost.

  4. High performance organic photovoltaics with plasmonic-coupled metal nanoparticle clusters.

    PubMed

    Park, Hyung Il; Lee, Seunghoon; Lee, Ju Min; Nam, Soo Ah; Jeon, Taewoo; Han, Sang Woo; Kim, Sang Ouk

    2014-10-28

    Performance enhancement of organic photovoltaics using plasmonic nanoparticles has been limited without interparticle plasmon coupling. We demonstrate high performance organic photovoltaics employing gold nanoparticle clusters with controlled morphology as a plasmonic component. Near-field coupling at the interparticle gaps of nanoparticle clusters gives rise to strong enhancement in localized electromagnetic field, which led to the significant improvement of exciton generation and dissociation in the active layer of organic solar cells. A power conversion efficiency of 9.48% is attained by employing gold nanoparticle clusters at the bottom of the organic active layer. This is one of the highest efficiency values reported thus far for the single active layer organic photovoltaics. PMID:25299878

  5. Motion of clusters of weakly coupled two-dimensional cavity solitons

    SciTech Connect

    Rosanov, N. N. Fedorov, S. V.; Shatsev, A. N.

    2006-04-15

    An analysis of clusters of weakly coupled two-dimensional spatial optical solitons in a large-aperture class A laser with a saturable absorber is developed. The symmetries that control the transverse motion of the clusters are described. Numerical solutions of the governing generalized complex Ginzburg-Landau equation demonstrate the existence of four types of clusters of weakly coupled cavity solitons that correspond to symmetries of transverse intensity distributions and energy flows: (1) stationary (with two mirror symmetry axes), (2) rotating about a stationary center of mass (invariant under rotation), (3) translating without rotation (with a single mirror symmetry axis), and (4) asymmetric ones rotating about a center of mass that moves around a circle (with equal periods of rotation and circular motion)

  6. Computation of Spectroscopic Factors with the Coupled-Cluster Method

    SciTech Connect

    Jensen, O.; Hagen, Gaute; Papenbrock, T.; Dean, David Jarvis; Vaagen, J. S.

    2010-01-01

    We present a calculation of spectroscopic factors within coupled-cluster theory. Our derivation of algebraic equations for the one-body overlap functions are based on coupled-cluster equation-of-motion solutions for the ground and excited states of the doubly magic nucleus with mass number A and the odd-mass neighbor with mass A-1. As a proof-of-principle calculation, we consider ^{16}O and the odd neighbors ^{15}O and ^{15}N, and compute the spectroscopic factor for nucleon removal from ^{16}O. We employ a renormalized low-momentum interaction of the V_{low-k} type derived from a chiral interaction at next-to-next-to-next-to-leading order. We study the sensitivity of our results by variation of the momentum cutoff, and then discuss the treatment of the center of mass.

  7. Coupling between {alpha}-condensed states and normal cluster states

    SciTech Connect

    Itagaki, N.; Kokalova, Tz.; Ito, M.; Kimura, M.; Oertzen, W. von

    2008-03-15

    We have studied the {alpha}-condensed states of {sup 16}O and {sup 20}Ne based on a microscopic {alpha}-cluster model. This was performed by introducing a Monte Carlo technique for the description of the THSR (Tohsaki Horiuchi Schuck Roepke) wave function, which is called the ''virtual THSR'' wave function. Earlier microscopic calculations pointed out the possibility of the existence of four-{alpha}-cluster condensed states. Here, in addition to studying the four-{alpha} case, we also studied the case of five-{alpha} particles, for which the states are shown to be stable around the threshold energy even after taking into account the coupling effect between normal cluster states with {sup 16}O+{alpha} configurations.

  8. Communication: Application of state-specific multireference coupled cluster methods to core-level excitations

    SciTech Connect

    Brabec, Jiri; Bhaskaran-Nair, Kiran; Govind, Niranjan; Pittner, Jiri; Kowalski, Karol

    2012-11-07

    The concept of the model space underlying multireference coupled-cluster (MRCC) formulations is a powerful tool to deal with complex correlation effects for various electronic states. Here, we demonstrate that iterative state-specific MRCC methods (SS-MRCC) based on properly defined model spaces can be used to describe core-level excited states even when canonical Hartree-Fock orbitals are utilized. We show that the SS-MRCC models with single and double excitations (SSMRCCSD) are comparable in accuracy to high-level single reference equation-of-motion coupled cluster (EOMCC) formalism. We also demonstrate that the SS-MRCC methods are capable of providing high accuracy results without experiencing numerical problems of the EOMCC methods.

  9. Orbital spaces in the divide-expand-consolidate coupled cluster method

    NASA Astrophysics Data System (ADS)

    Ettenhuber, Patrick; Baudin, Pablo; Kjærgaard, Thomas; Jørgensen, Poul; Kristensen, Kasper

    2016-04-01

    The theoretical foundation for solving coupled cluster singles and doubles (CCSD) amplitude equations to a desired precision in terms of independent fragment calculations using restricted local orbital spaces is reinvestigated with focus on the individual error sources. Four different error sources are identified theoretically and numerically and it is demonstrated that, for practical purposes, local orbital spaces for CCSD calculations can be identified from calculations at the MP2 level. The development establishes a solid theoretical foundation for local CCSD calculations for the independent fragments, and thus for divide-expand-consolidate coupled cluster calculations for large molecular systems with rigorous error control. Based on this theoretical foundation, we have developed an algorithm for determining the orbital spaces needed for obtaining the single fragment energies to a requested precision and numerically demonstrated the robustness and precision of this algorithm.

  10. Multireference state-specific coupled-cluster methods. State-of-the-art and perspectives.

    PubMed

    Ivanov, Vladimir V; Lyakh, Dmitry I; Adamowicz, Ludwik

    2009-04-14

    This work reviews the state-specific multireference coupled-cluster (CC) approaches which have been developed as approximate methods for performing high-level quantum mechanical calculations on quasidegenerate ground and excited states of atomic and molecular systems. The term "quasidegenerate" refers to a state that cannot be described even in the first approximation by a single-determinant wavefunction (a Slater determinant), but requires two or more determinants for this purpose. The main challenge with applying the coupled-cluster theory to such states is in describing the electron correlation effects in the wavefunctions representing these states in a manner that is size-extensive, yet accurate and simple enough so the method can be routinely applied to small and medium-size molecular systems. We are describing how this can be accomplished within a theory that focuses on only one state of the system in a single CC calculation (the state-specific theory). PMID:19325966

  11. Adiabatic transfer of coherences in a cluster of coupled nuclear spins

    SciTech Connect

    Lee, Jae-Seung; Cardwell, Kate E.; Khitrin, A. K.

    2005-12-15

    It is experimentally demonstrated that quantum coherences can be efficiently transferred using adiabatic energy-level crossing. In a cluster of six dipolar-coupled proton spins of benzene, oriented by a liquid-crystalline matrix, a single-quantum coherence between one pair of states has been adiabatically transferred to another pair of states, and the superposition survived even after ten successive energy-level crossings.

  12. Equivalence of particle-particle random phase approximation correlation energy and ladder-coupled-cluster doubles.

    PubMed

    Peng, Degao; Steinmann, Stephan N; van Aggelen, Helen; Yang, Weitao

    2013-09-14

    The recent proposal to determine the (exact) correlation energy based on pairing matrix fluctuations by van Aggelen et al. ["Exchange-correlation energy from pairing matrix fluctuation and the particle-particle random phase approximation," preprint arXiv:1306.4957 (2013)] revived the interest in the simplest approximation along this path: the particle-particle random phase approximation (pp-RPA). In this paper, we present an analytical connection and numerical demonstrations of the equivalence of the correlation energy from pp-RPA and ladder-coupled-cluster doubles. These two theories reduce to identical algebraic matrix equations and correlation energy expressions. The numerical examples illustrate that the correlation energy missed by pp-RPA in comparison with coupled-cluster singles and doubles is largely canceled out when considering reaction energies. This theoretical connection will be beneficial to design density functionals with strong ties to coupled-cluster theories and to study molecular properties at the pp-RPA level relying on well established coupled cluster techniques. PMID:24050333

  13. Communication: X-ray absorption spectra and core-ionization potentials within a core-valence separated coupled cluster framework

    NASA Astrophysics Data System (ADS)

    Coriani, Sonia; Koch, Henrik

    2015-11-01

    We present a simple scheme to compute X-ray absorption spectra (e.g., near-edge absorption fine structure) and core ionisation energies within coupled cluster linear response theory. The approach exploits the so-called core-valence separation to effectively reduce the excitation space to processes involving at least one core orbital, and it can be easily implemented within any pre-existing coupled cluster code for low energy states. We further develop a perturbation correction that incorporates the effect of the excluded part of the excitation space. The correction is shown to be highly accurate. Test results are presented for a set of molecular systems for which well converged results in full space could be generated at the coupled cluster singles and doubles level of theory only, but the scheme is straightforwardly generalizable to all members of the coupled cluster hierarchy of approximations, including CC3.

  14. Ferromagnetic spin coupling in the chromium dimer cation: Measurements by photodissociation spectroscopy combined with coupled-cluster calculations

    SciTech Connect

    Egashira, Kazuhiro; Yamada, Yurika; Kita, Yukiumi; Tachikawa, Masanori

    2015-02-07

    The magnetic coupling of the chromium dimer cation, Cr{sub 2}{sup +}, has been an outstanding problem for decades. An optical absorption spectrum of Cr{sub 2}{sup +} has been obtained by photodissociation spectroscopy in the photon-energy range from 2.0 to 5.0 eV. Besides, calculations have been performed by the equation-of-motion coupled-cluster singles and doubles method for vertical excitation of the species. Their coincidence supports our assignment that the ground electronic state exhibits a ferromagnetic spin coupling, which is contrary to those of neutral and negatively charged dimers, Cr{sub 2} and Cr{sub 2}{sup −}, in their lowest spin states.

  15. Approaching Phosphorescence Lifetimes in Solution: The Two-Component Polarizable-Embedding Approximate Coupled-Cluster Method.

    PubMed

    Krause, Katharina; Bauer, Mirko; Klopper, Wim

    2016-06-14

    Theoretical description of phosphorescence lifetimes in the condensed phase requires a method that takes into account both spin-orbit coupling and solvent-solute interactions. To obtain such a method, we have coupled our recently developed two-component coupled-cluster method with singles and approximated doubles to a polarizable environment. With this new method, we investigate how different solvents effect the electronic phosphorescence energies and lifetimes of 4H-pyran-4-thione. PMID:27158835

  16. Slicing and dicing globular clusters: dynamically evolved single stellar populations

    NASA Astrophysics Data System (ADS)

    Sippel, Anna C.; Hurley, Jarrod R.

    2016-04-01

    We utilize direct N-body models of globular clusters including stellar evolution to calculate magnitudes for each star in the Hubble Space Telescope Advanced Camera for Surveys 555, 606 and 814 filters. This enables us to analyse the colour of dynamically evolved single stellar populations over time in colour-magnitude diagrams of both, resolved and integrated globular clusters. We find that the change of integrated cluster colour is driven predominantly by the colour of the brightest stars available and hence by stellar evolution, but not by the removal of low-mass stars. We show that even in mass-segregated clusters, different stellar populations are distributed over the entire cluster. This implies that evolved stars also exist within and outside the half-mass radius.

  17. Mode couplings and resonance instabilities in dust clusters.

    PubMed

    Qiao, Ke; Kong, Jie; Oeveren, Eric Van; Matthews, Lorin S; Hyde, Truell W

    2013-10-01

    The normal modes for three to seven particle two-dimensional (2D) dust clusters in a complex plasma are investigated using an N-body simulation. The ion wakefield downstream of each particle is shown to induce coupling between horizontal and vertical modes. The rules of mode coupling are investigated by classifying the mode eigenvectors employing the Bessel and trigonometric functions indexed by order integers (m, n). It is shown that coupling only occurs between two modes with the same m and that horizontal modes having a higher shear contribution exhibit weaker coupling. Three types of resonances are shown to occur when two coupled modes have the same frequency. Discrete instabilities caused by both the first and third type of resonances are verified and instabilities caused by the third type of resonance are found to induce melting. The melting procedure is observed to go through a two-step process with the solid-liquid transition closely obeying the Lindemann criterion. PMID:24229289

  18. Coupled-Cluster Theory for Molecular Structure and Spectra: The Challenges Posed By Molecules and the Coupled-Cluster Solutions

    NASA Astrophysics Data System (ADS)

    Bartlett, Rodney

    2008-04-01

    Coupled-cluster (CC) theory derives from the ansatz that the n-particle wavefunction is |ψ>=exp(T)|0>, where T is an excitation operator with |0> some choice of mean-field wavefunction. That is sufficient to obtain energies. But to obtain anything else, we use the CC functional, E=<0|(!+λ)exp(-T)Hexp(T)|0>, whose left and right hand eigenvectors provide energies and associated density matrices for the treatment of properties in CC theory. The introduction of λ makes it possible to obtain the ˜3N forces associated with N atoms in the same time as the energy itself. This is essential information for indentifying the critical points on a potential energy surface and their associated Hessians, for either the prediction of vibrational spectra or to characterize a saddle point (transition state) for a reaction. A generalization of the functional to φ(k) =<0|L(k) exp(-T)Hexp(T)R(k)|0>, provides excitation energies, φ(k) along with excited state left- and right-hand wavefunctions, Finally, with the response functions obtained from these left- and right-hand eigenfunctions, used in closed form, higher-order properties like NMR coupling constants are obtained. In this way, coupled-cluster theory provides a method that addresses all the properties of interest for molecules and their interactions. This development will be the topic of our contribution. For details please see, R. J. Bartlett and M Musial, ``Coupled-cluster theory in quantum chemistry'', Revs. of Modern Phys. 79, 291-352 (2007).

  19. Predictive coupled-cluster isomer orderings for some SinCm (m, n ≤ 12) clusters: A pragmatic comparison between DFT and complete basis limit coupled-cluster benchmarks.

    PubMed

    Byrd, Jason N; Lutz, Jesse J; Jin, Yifan; Ranasinghe, Duminda S; Montgomery, John A; Perera, Ajith; Duan, Xiaofeng F; Burggraf, Larry W; Sanders, Beverly A; Bartlett, Rodney J

    2016-07-14

    The accurate determination of the preferred Si12C12 isomer is important to guide experimental efforts directed towards synthesizing SiC nano-wires and related polymer structures which are anticipated to be highly efficient exciton materials for the opto-electronic devices. In order to definitively identify preferred isomeric structures for silicon carbon nano-clusters, highly accurate geometries, energies, and harmonic zero point energies have been computed using coupled-cluster theory with systematic extrapolation to the complete basis limit for set of silicon carbon clusters ranging in size from SiC3 to Si12C12. It is found that post-MBPT(2) correlation energy plays a significant role in obtaining converged relative isomer energies, suggesting that predictions using low rung density functional methods will not have adequate accuracy. Utilizing the best composite coupled-cluster energy that is still computationally feasible, entailing a 3-4 SCF and coupled-cluster theory with singles and doubles extrapolation with triple-ζ (T) correlation, the closo Si12C12 isomer is identified to be the preferred isomer in the support of previous calculations [X. F. Duan and L. W. Burggraf, J. Chem. Phys. 142, 034303 (2015)]. Additionally we have investigated more pragmatic approaches to obtaining accurate silicon carbide isomer energies, including the use of frozen natural orbital coupled-cluster theory and several rungs of standard and double-hybrid density functional theory. Frozen natural orbitals as a way to compute post-MBPT(2) correlation energy are found to be an excellent balance between efficiency and accuracy. PMID:27421410

  20. Predictive coupled-cluster isomer orderings for some SinCm (m, n ≤ 12) clusters: A pragmatic comparison between DFT and complete basis limit coupled-cluster benchmarks

    NASA Astrophysics Data System (ADS)

    Byrd, Jason N.; Lutz, Jesse J.; Jin, Yifan; Ranasinghe, Duminda S.; Montgomery, John A.; Perera, Ajith; Duan, Xiaofeng F.; Burggraf, Larry W.; Sanders, Beverly A.; Bartlett, Rodney J.

    2016-07-01

    The accurate determination of the preferred Si12C12 isomer is important to guide experimental efforts directed towards synthesizing SiC nano-wires and related polymer structures which are anticipated to be highly efficient exciton materials for the opto-electronic devices. In order to definitively identify preferred isomeric structures for silicon carbon nano-clusters, highly accurate geometries, energies, and harmonic zero point energies have been computed using coupled-cluster theory with systematic extrapolation to the complete basis limit for set of silicon carbon clusters ranging in size from SiC3 to Si12C12. It is found that post-MBPT(2) correlation energy plays a significant role in obtaining converged relative isomer energies, suggesting that predictions using low rung density functional methods will not have adequate accuracy. Utilizing the best composite coupled-cluster energy that is still computationally feasible, entailing a 3-4 SCF and coupled-cluster theory with singles and doubles extrapolation with triple-ζ (T) correlation, the closo Si12C12 isomer is identified to be the preferred isomer in the support of previous calculations [X. F. Duan and L. W. Burggraf, J. Chem. Phys. 142, 034303 (2015)]. Additionally we have investigated more pragmatic approaches to obtaining accurate silicon carbide isomer energies, including the use of frozen natural orbital coupled-cluster theory and several rungs of standard and double-hybrid density functional theory. Frozen natural orbitals as a way to compute post-MBPT(2) correlation energy are found to be an excellent balance between efficiency and accuracy.

  1. Polarizabilities and first hyperpolarizabilities of HF, Ne, and BH from full configuration interaction and coupled cluster calculations

    NASA Astrophysics Data System (ADS)

    Larsen, Helena; Olsen, Jeppe; Hättig, Christof; Jørgensen, Poul; Christiansen, Ove; Gauss, Jürgen

    1999-08-01

    Static and frequency-dependent polarizabilities and first hyperpolarizabilities have been calculated for HF and Ne using full configuration interaction (FCI) and a hierarchy of coupled cluster models: coupled cluster singles (CCS), an approximate coupled cluster singles and doubles model (CC2), coupled cluster singles and doubles (CCSD), an approximate coupled cluster singles, doubles, and triples model (CC3), and coupled cluster singles, doubles, and triples (CCSDT). A previous study of BH concerning FCI benchmarking has been extended to include CC3 and static CCSDT values. Systematic improvements of the polarizabilities and the hyperpolarizabilities are found going from CCS to CCSD and from CCSD to CC3 or CCSDT. Little or no improvement of the polarizabilities and no improvement of the hyperpolarizabilities are seen when going from CCS to CC2. The CCSD results represent a significant improvement over CCS and CC2 but are again surpassed by the CC3 results which agree very well with the FCI values. The relative error for the static polarizability at the CC3 level is 0.11% for Ne and, respectively, 0.16% and 0.20% for αxx and αzz of HF. For βzzz and βzxx the errors are 0.50% and 1.7%, respectively. Only in the challenging case of BH does CCSDT improve the CC3 values. The dispersion for the polarizabilities and hyperpolarizabilities is predicted with increasing accuracy in the CCS-CC2-CCSD-CC3 sequence as expected from the increasing accuracy of the electronic excitation energies. For all molecules the effect of orbital relaxation has been investigated for the static properties. The inclusion of orbital relaxation gives results that are somewhat different from the unrelaxed results but are in general no improvement.

  2. Simulation of circularly polarized luminescence spectra using coupled cluster theory

    SciTech Connect

    McAlexander, Harley R.; Crawford, T. Daniel

    2015-04-21

    We report the first computations of circularly polarized luminescence (CPL) rotatory strengths at the equation-of-motion coupled cluster singles and doubles (EOM-CCSD) level of theory. Using a test set of eight chiral ketones, we compare both dipole and rotatory strengths for absorption (electronic circular dichroism) and emission to the results from time-dependent density-functional theory (TD-DFT) and available experimental data for both valence and Rydberg transitions. For two of the compounds, we obtained optimized geometries of the lowest several excited states using both EOM-CCSD and TD-DFT and determined that structures and EOM-CCSD transition properties obtained with each structure were sufficiently similar that TD-DFT optimizations were acceptable for the remaining test cases. Agreement between EOM-CCSD and the Becke three-parameter exchange function and Lee-Yang-Parr correlation functional (B3LYP) corrected using the Coulomb attenuating method (CAM-B3LYP) is typically good for most of the transitions, though agreement with the uncorrected B3LYP functional is significantly worse for all reported properties. The choice of length vs. velocity representation of the electric dipole operator has little impact on the EOM-CCSD transition strengths for nearly all of the states we examined. For a pair of closely related β, γ-enones, (1R)-7-methylenebicyclo[2.2.1]heptan-2-one and (1S)-2-methylenebicyclo[2.2.1]heptan-7-one, we find that EOM-CCSD and CAM-B3LYP agree with the energetic ordering of the two possible excited-state conformations, resulting in good agreement with experimental rotatory strengths in both absorption and emission, whereas B3LYP yields a qualitatively incorrect result for the CPL signal of (1S)-2-methylenebicyclo[2.2.1]heptan-7-one. Finally, we predict that one of the compounds considered here, trans-bicyclo[3.3.0]octane-3,7-dione, is unique in that it exhibits an achiral ground state and a chiral first excited state, leading to a strong CPL

  3. High-accuracy coupled cluster calculations of atomic properties

    SciTech Connect

    Borschevsky, A.; Yakobi, H.; Eliav, E.; Kaldor, U.

    2015-01-22

    The four-component Fock-space coupled cluster and intermediate Hamiltonian methods are implemented to evaluate atomic properties. The latter include the spectra of nobelium and lawrencium (elements 102 and 103) in the range 20000-30000 cm{sup −1}, the polarizabilities of elements 112-114 and 118, required for estimating their adsorption enthalpies on surfaces used to separate them in accelerators, and the nuclear quadrupole moments of some heavy atoms. The calculations on superheavy elements are supported by the very good agreement with experiment obtained for the lighter homologues.

  4. Time-dependent coupled-cluster method for atomic nuclei

    SciTech Connect

    Pigg, David A; Hagen, Gaute; Nam, Hai Ah; Papenbrock, Thomas F

    2012-01-01

    We study time-dependent coupled-cluster theory in the framework of nuclear physics. Based on Kvaal's bi-variational formulation of this method [S. Kvaal, arXiv:1201.5548], we explicitly demonstrate that observables that commute with the Hamiltonian are conserved under time evolution. We explore the role of the energy and of the similarity-transformed Hamiltonian under real and imaginary time evolution and relate the latter to similarity renormalization group transformations. Proof-of-principle computations of He-4 and O-16 in small model spaces, and computations of the Lipkin model illustrate the capabilities of the method

  5. Communication: Improved pair approximations in local coupled-cluster methods

    SciTech Connect

    Schwilk, Max; Werner, Hans-Joachim; Usvyat, Denis

    2015-03-28

    In local coupled cluster treatments the electron pairs can be classified according to the magnitude of their energy contributions or distances into strong, close, weak, and distant pairs. Different approximations are introduced for the latter three classes. In this communication, an improved simplified treatment of close and weak pairs is proposed, which is based on long-range cancellations of individually slowly decaying contributions in the amplitude equations. Benchmark calculations for correlation, reaction, and activation energies demonstrate that these approximations work extremely well, while pair approximations based on local second-order Møller-Plesset theory can lead to errors that are 1-2 orders of magnitude larger.

  6. Coupled-cluster theory for atoms and molecules in strong magnetic fields.

    PubMed

    Stopkowicz, Stella; Gauss, Jürgen; Lange, Kai K; Tellgren, Erik I; Helgaker, Trygve

    2015-08-21

    An implementation of coupled-cluster (CC) theory to treat atoms and molecules in finite magnetic fields is presented. The main challenges for the implementation stem from the magnetic-field dependence in the Hamiltonian, or, more precisely, the appearance of the angular momentum operator, due to which the wave function becomes complex and which introduces a gauge-origin dependence. For this reason, an implementation of a complex CC code is required together with the use of gauge-including atomic orbitals to ensure gauge-origin independence. Results of coupled-cluster singles-doubles-perturbative-triples (CCSD(T)) calculations are presented for atoms and molecules with a focus on the dependence of correlation and binding energies on the magnetic field. PMID:26298118

  7. Comparing Effects of Cluster-Coupled Patterns on Opinion Dynamics

    NASA Astrophysics Data System (ADS)

    Liu, Yun; Si, Xia-Meng; Zhang, Yan-Chao

    2012-07-01

    Community structure is another important feature besides small-world and scale-free property of complex networks. Communities can be coupled through specific fixed links between nodes, or occasional encounter behavior. We introduce a model for opinion evolution with multiple cluster-coupled patterns, in which the interconnectivity denotes the coupled degree of communities by fixed links, and encounter frequency controls the coupled degree of communities by encounter behaviors. Considering the complicated cognitive system of people, the CODA (continuous opinions and discrete actions) update rules are used to mimic how people update their decisions after interacting with someone. It is shown that, large interconnectivity and encounter frequency both can promote consensus, reduce competition between communities and propagate some opinion successfully across the whole population. Encounter frequency is better than interconnectivity at facilitating the consensus of decisions. When the degree of social cohesion is same, small interconnectivity has better effects on lessening the competence between communities than small encounter frequency does, while large encounter frequency can make the greater degree of agreement across the whole populations than large interconnectivity can.

  8. Nonlinear mode coupling and vibrational energy transfer in Yukawa clusters

    NASA Astrophysics Data System (ADS)

    Qiao, Ke; Kong, Jie; Matthews, Lorin; Hyde, Truell

    2015-11-01

    Nonlinear mode coupling and the subsequent vibrational energy transfer that results is an important topic in chemical physics research, ranging from small molecules consisting of several atoms to macromolecules such as those found in proteins and DNA. Nonlinear mode coupling is recognized as the mechanism leading to ergodicity, which is a foundational tenet of statistical mechanics. Over the past two decades, Yukawa systems of particles such as those found in complex plasma, have been shown to be an effective model across a large number of physical systems. In this research, nonlinear mode coupling in Yukawa clusters consisting of 3-10 particles is examined via numerical simulation of the vibrational energy transfer between modes starting from an initial excited state. The relationship between the energy transfer process and the internal resonance between modes having a specified frequency ratio and the temporal evolution of the system to a state of equal energy across all modes, i.e., the state of ergodicity, will be discussed. Support from the NSF and the DOE (award numbers PHY-1262031 and PHY-1414523) is gratefully acknowledged.

  9. Phage cluster relationships identified through single gene analysis

    PubMed Central

    2013-01-01

    Background Phylogenetic comparison of bacteriophages requires whole genome approaches such as dotplot analysis, genome pairwise maps, and gene content analysis. Currently mycobacteriophages, a highly studied phage group, are categorized into related clusters based on the comparative analysis of whole genome sequences. With the recent explosion of phage isolation, a simple method for phage cluster prediction would facilitate analysis of crude or complex samples without whole genome isolation and sequencing. The hypothesis of this study was that mycobacteriophage-cluster prediction is possible using comparison of a single, ubiquitous, semi-conserved gene. Tape Measure Protein (TMP) was selected to test the hypothesis because it is typically the longest gene in mycobacteriophage genomes and because regions within the TMP gene are conserved. Results A single gene, TMP, identified the known Mycobacteriophage clusters and subclusters using a Gepard dotplot comparison or a phylogenetic tree constructed from global alignment and maximum likelihood comparisons. Gepard analysis of 247 mycobacteriophage TMP sequences appropriately recovered 98.8% of the subcluster assignments that were made by whole-genome comparison. Subcluster-specific primers within TMP allow for PCR determination of the mycobacteriophage subcluster from DNA samples. Using the single-gene comparison approach for siphovirus coliphages, phage groupings by TMP comparison reflected relationships observed in a whole genome dotplot comparison and confirm the potential utility of this approach to another widely studied group of phages. Conclusions TMP sequence comparison and PCR results support the hypothesis that a single gene can be used for distinguishing phage cluster and subcluster assignments. TMP single-gene analysis can quickly and accurately aid in mycobacteriophage classification. PMID:23777341

  10. Single & Multiple Stellar Populations in Globular Clusters: Chemical Tagging, Photometric Sequences, and Dynamics

    NASA Astrophysics Data System (ADS)

    Piotto, Giampaolo

    2015-08-01

    The discovery of multiple stellar populations in globular clusters has revolutionized our view of these objects one thought to be simple, single population stellar systems. Different star formation scenarios have been proposed in order to account for the photometric and spectroscopic properties of the different populations hosted by the single cluster, and some of them imply that the original cluster should have been much more massive than it is now, with a significant fraction of the original stars lost into the environment (Galaxy halo or bulge). Because of this, globular clusters become relevant not only as tracers of the general process of galaxy halo formation, but also possible incubators of most (all?) halo stars.In my talk I will briefly summarize the basic observational facts that made the community at large to accept the idea of population multiplicity.I will also present the newest results coming from an extensive, multi-wavelength astrometric and photometric survey, which includes UV data from ACS and WFC3/HST of close to half of the Milky Way globular clusters. The increasing number of spectroscopic surveys of stars in globular clusters, coupled with the capability of (UV) photometry to distinguish different populations has largely increased our capability to trace the basic chemical properties of the many populations within a single cluster.I will present a census of the presence of multiple populations in GCs, their chemical tagging, radial distribution, and kinematics.Possible correlations of multiple populations characterizing quantities with the main cluster parameters will also be presented. Implications on multiple stellar populations formation will be discussed as well as the still open issues.

  11. Cluster analysis of WIBS single particle bioaerosol data

    NASA Astrophysics Data System (ADS)

    Robinson, N. H.; Allan, J. D.; Huffman, J. A.; Kaye, P. H.; Foot, V. E.; Gallagher, M.

    2012-09-01

    Hierarchical agglomerative cluster analysis was performed on single-particle multi-spatial datasets comprising optical diameter, asymmetry and three different fluorescence measurements, gathered using two dual Waveband Integrated Bioaerosol Sensor (WIBS). The technique is demonstrated on measurements of various fluorescent and non-fluorescent polystyrene latex spheres (PSL) before being applied to two separate contemporaneous ambient WIBS datasets recorded in a forest site in Colorado, USA as part of the BEACHON-RoMBAS project. Cluster analysis results between both datasets are consistent. Clusters are tentatively interpreted by comparison of concentration time series and cluster average measurement values to the published literature (of which there is a paucity) to represent: non-fluorescent accumulation mode aerosol; bacterial agglomerates; and fungal spores. To our knowledge, this is the first time cluster analysis has been applied to long term online PBAP measurements. The novel application of this clustering technique provides a means for routinely reducing WIBS data to discrete concentration time series which are more easily interpretable, without the need for any a priori assumptions concerning the expected aerosol types. It can reduce the level of subjectivity compared to the more standard analysis approaches, which are typically performed by simple inspection of various ensemble data products. It also has the advantage of potentially resolving less populous or subtly different particle types. This technique is likely to become more robust in the future as fluorescence-based aerosol instrumentation measurement precision, dynamic range and the number of available metrics is improved.

  12. Matrix elements in the coupled-cluster approach - With application to low-lying states in Li

    NASA Technical Reports Server (NTRS)

    Martensson-Pendrill, Ann-Marie; Ynnerman, Anders

    1990-01-01

    A procedure is suggested for evaluating matrix elements of an operator between wavefunctions in the coupled-cluster form. The use of the exponential ansatz leads to compact exponential expressions also for matrix elements. Algorithms are developed for summing all effects of one-particle clusters and certain chains of two-particle clusters (containing the well-known random-phase approximation as a subset). The treatment of one-particle perturbations in single valence states is investigated in detail. As examples the oscillator strength for the 2s-2p transition in Li as well as the hyperfine structure for the two states are studied and compared to earlier work.

  13. Higher-order diagrammatic vibrational coupled-cluster theory

    NASA Astrophysics Data System (ADS)

    Faucheaux, Jacob A.; Hirata, So

    2015-10-01

    Diagrammatically size-consistent and basis-set-free vibrational coupled-cluster (XVCC) theory for both zero-point energies and transition frequencies of a molecule, the latter through the equation-of-motion (EOM) formalism, is defined for an nth-order Taylor-series potential energy surface (PES). Quantum-field-theoretical tools (the rules of normal-ordered second quantization and Feynman-Goldstone diagrams) for deriving their working equations are established. The equations of XVCC and EOM-XVCC including up to the mth-order excitation operators are derived and implemented with the aid of computer algebra in the range of 1 ≤ m ≤ 8. Algorithm optimizations known as strength reduction, intermediate reuse, and factorization are carried out before code generation, reducing the cost scaling of the mth-order XVCC and EOM-XVCC in an nth-order Taylor-series PES (m ≥ n) to the optimal value of O(Nm+⌊n/2⌋), where N is the number of modes. The calculated zero-point energies and frequencies of fundamentals, overtones, and combinations as well as Fermi-resonant modes display rapid and nearly monotonic convergence with m towards the exact values for the PES. The theory with the same excitation rank as the truncation order of the Taylor-series PES (m = n) seems to strike the best cost-accuracy balance, achieving the accuracy of a few tenths of cm-1 for transitions involving (m - 3) modes and of a few cm-1 for those involving (m - 2) modes. The relationships between XVCC and the vibrational coupled-cluster theories of Prasad and coworkers and of Christiansen and coworkers as well as the size-extensive vibrational self-consistent-field and many-body perturbation theories are also elucidated.

  14. Higher-order diagrammatic vibrational coupled-cluster theory.

    PubMed

    Faucheaux, Jacob A; Hirata, So

    2015-10-01

    Diagrammatically size-consistent and basis-set-free vibrational coupled-cluster (XVCC) theory for both zero-point energies and transition frequencies of a molecule, the latter through the equation-of-motion (EOM) formalism, is defined for an nth-order Taylor-series potential energy surface (PES). Quantum-field-theoretical tools (the rules of normal-ordered second quantization and Feynman-Goldstone diagrams) for deriving their working equations are established. The equations of XVCC and EOM-XVCC including up to the mth-order excitation operators are derived and implemented with the aid of computer algebra in the range of 1 ≤ m ≤ 8. Algorithm optimizations known as strength reduction, intermediate reuse, and factorization are carried out before code generation, reducing the cost scaling of the mth-order XVCC and EOM-XVCC in an nth-order Taylor-series PES (m ≥ n) to the optimal value of O(N(m+⌊n/2⌋)), where N is the number of modes. The calculated zero-point energies and frequencies of fundamentals, overtones, and combinations as well as Fermi-resonant modes display rapid and nearly monotonic convergence with m towards the exact values for the PES. The theory with the same excitation rank as the truncation order of the Taylor-series PES (m = n) seems to strike the best cost-accuracy balance, achieving the accuracy of a few tenths of cm(-1) for transitions involving (m - 3) modes and of a few cm(-1) for those involving (m - 2) modes. The relationships between XVCC and the vibrational coupled-cluster theories of Prasad and coworkers and of Christiansen and coworkers as well as the size-extensive vibrational self-consistent-field and many-body perturbation theories are also elucidated. PMID:26450290

  15. Equation of motion coupled cluster methods for electron attachment and ionization potential in polyacenes

    NASA Astrophysics Data System (ADS)

    Bhaskaran-Nair, Kiran; Kowalski, Karol; Jarrell, Mark; Moreno, Juana; Shelton, William A.

    2015-11-01

    Polyacenes have attracted considerable attention due to their various applications in organic optoelectronic materials. This study focuses on linear polyacenes and their electron affinity (EA) and ionization potential (IP) properties. We have employed our recent implementation of EA/IP equation of motion coupled cluster singles and doubles (EA/IP-EOMCCSD) methods which are accurate, computationally efficient and are capable of treating large systems employing reasonable basis sets size. The EA/IP results obtained for naphthalene, anthracene, tetracene, pentacene, hexacene and heptacene are in a good agreement with experiment. Comparison between quality of excitation energies obtained from IP-EOMCCSD and EE-EOMCCSD formalisms were also studied.

  16. Relativistic Coupled-Cluster Theory of Atomic Parity Nonconservation: Application to {sup 137}Ba{sup +}

    SciTech Connect

    Sahoo, Bijaya K.; Chaudhuri, Rajat; Das, B. P.; Mukherjee, Debashis

    2006-04-28

    We report the result of our ab initio calculation of the 6s{sup 2}S{sub 1/2}{yields}5d{sup 2}D{sub 3/2} parity nonconserving electric dipole transition amplitude in {sup 137}Ba{sup +} based on relativistic coupled-cluster theory. Considering single, double, and partial triple excitations, we have achieved an accuracy of less than 1%. If the accuracy of our calculation can be matched by the proposed parity nonconservation experiment in Ba{sup +} for the above transition, then the combination of the two results would provide an independent nonaccelerator test of the standard model of particle physics.

  17. Comparison of coupled-cluster methods which include the effects of connected triple excitations

    NASA Technical Reports Server (NTRS)

    Scuseria, Gustavo E.; Lee, Timothy J.

    1990-01-01

    The 'coupled cluster single, double, and triple' (CCSDT) excitation model has been used to ascertain electron correlation energies for 14 different molecules representing a variety of chemical bonds, in conjunction with several methods of this type 'CCSDT-x', which include only an approximate treatment of connected triple excitations; these methods encompass CCSDT-1a, -1b, -2, -3, and -4, as well as the novel CCSD(T). While all methods treat the effects of connected triple excitations iteratively, CCSD(T) approaches then perturbationally. For the 14 molecules considered, the CCSD(T) method's average error relative to CCSDT is substantially lower than any of the CCSDT-x methods.

  18. Optimization of the Coupled Cluster Implementation in NWChem on Petascale Parallel Architectures

    SciTech Connect

    Anisimov, Victor; Bauer, Gregory H.; Chadalavada, Kalyana; Olson, Ryan M.; Glenski, Joseph W.; Kramer, William T.; Apra, Edoardo; Kowalski, Karol

    2014-09-04

    Coupled cluster singles and doubles (CCSD) algorithm has been optimized in NWChem software package. This modification alleviated the communication bottleneck and provided from 2- to 5-fold speedup in the CCSD iteration time depending on the problem size and available memory. Sustained 0.60 petaflop/sec performance on CCSD(T) calculation has been obtained on NCSA Blue Waters. This number included all stages of the calculation from initialization till termination, iterative computation of single and double excitations, and perturbative accounting for triple excitations. In the section of perturbative triples alone, the computation maintained 1.18 petaflop/sec performance level. CCSD computations have been performed on Guanine-Cytosine deoxydinucleotide monophosphate (GC-dDMP) to probe the conformational energy difference in DNA single strand in A- and B-conformations. The computation revealed significant discrepancy between CCSD and classical force fields in prediction of relative energy of A- and B-conformations of GC-dDMP.

  19. Communication: The performance of non-iterative coupled cluster quadruples models.

    PubMed

    Eriksen, Janus J; Matthews, Devin A; Jørgensen, Poul; Gauss, Jürgen

    2015-07-28

    We compare the numerical performance of various non-iterative coupled cluster (CC) quadruples models. The results collectively show how approaches that attempt to correct the CC singles and doubles energy for the combined effect of triple and quadruple excitations all fail at recovering the correlation energy of the full CC singles, doubles, triples, and quadruples (CCSDTQ) model to within sufficient accuracy. Such a level of accuracy is only achieved by models that make corrections to the full CC singles, doubles, and triples (CCSDT) energy for the isolated effect of quadruple excitations of which the CCSDT(Q-3) and CCSDT(Q-4) models of the Lagrangian-based CCSDT(Q-n) perturbation series are found to outperform alternative models that add either of the established [Q] and (Q) corrections to the CCSDT energy. PMID:26233096

  20. Coupled Cluster Evaluation of the Stability of Atmospheric Acid-Base Clusters with up to 10 Molecules.

    PubMed

    Myllys, Nanna; Elm, Jonas; Halonen, Roope; Kurtén, Theo; Vehkamäki, Hanna

    2016-02-01

    We investigate the utilization of the domain local pair natural orbital coupled cluster (DLPNO-CCSD(T)) method for calculating binding energies of atmospherical molecular clusters. Applied to small complexes of atmospherical relevance we find that the DLPNO method significantly reduces the scatter in the binding energy, which is commonly present in DFT calculations. For medium sized clusters consisting of sulfuric acid and bases the DLPNO method yields a systematic underestimation of the binding energy compared to canonical coupled cluster results. The errors in the DFT binding energies appear to be more random, while the systematic nature of the DLPNO results allows the establishment of a scaling factor, to better mimic the canonical coupled cluster calculations. Based on the trends identified for the small and medium sized systems, we further extend the application of the DLPNO method to large acid - base clusters consisting of up to 10 molecules, which have previously been out of reach with accurate coupled cluster methods. Using the Atmospheric Cluster Dynamics Code (ACDC) we compare the sulfuric acid dimer formation based on the new DLPNO binding energies with previously published RI-CC2/aug-cc-pV(T+d)Z results. We also compare the simulated sulfuric acid dimer concentration as a function of the base concentration with measurement data from the CLOUD chamber and flow tube experiments. The DLPNO method, even after scaling, underpredicts the dimer concentration significantly. Reasons for this are discussed. PMID:26771121

  1. Efficient optical coupling into a single plasmonic nanostructure using a fiber-coupled microspherical cavity

    NASA Astrophysics Data System (ADS)

    Takashima, Hideaki; Kitajima, Kazutaka; Tanaka, Yoshito; Fujiwara, Hideki; Sasaki, Keiji

    2014-02-01

    Toward complete coupling between propagating light (PL) and a single localized-surface-plasmon (LSP) nanostructure, we propose a tapered-fiber-coupled microspherical cavity system combining an Au-coated probe tip. This system possesses the unique characteristic of precise adjustability for the fiber-cavity coupling rate and the cavity-plasmon coupling rate, which is indispensable for achieving the critical coupling conditions. We successfully demonstrate the 93% PL coupling into the LSP antenna with an effective area of a 58 nm circle, exceeding the diffraction limit.

  2. Spherical coupled-cluster theory for open-shell nuclei

    NASA Astrophysics Data System (ADS)

    Jansen, G. R.

    2013-08-01

    Background: A microscopic description of nuclei is important to understand the nuclear shell model from fundamental principles. This is difficult to achieve for more than the lightest nuclei without an effective approximation scheme.Purpose: Define and evaluate an approximation scheme that can be used to study nuclei that are described as two particles attached to a closed (sub-)shell nucleus.Methods: The equation-of-motion coupled-cluster formalism has been used to obtain ground- and excited-state energies. This method is based on the diagonalization of a non-Hermitian matrix obtained from a similarity transformation of the many-body nuclear Hamiltonian. A chiral interaction at the next-to-next-to-next-to leading order (N3LO) using a cutoff at 500 MeV was used.Results: The ground-state energies of 6Li and 6He were in good agreement with a no-core shell-model calculation using the same interaction. Several excited states were also produced with overall good agreement. Only the Jπ=3+ excited state in 6Li showed a sizable deviation. The ground-state energies of 18O, 18F, and 18Ne were converged but underbound compared to experiment. Moreover, the calculated spectra were converged and comparable to both experiment and shell-model studies in this region. Some excited states in 18O were high or missing in the spectrum. It was also shown that the wave function for both ground and excited states separates into an intrinsic part and a Gaussian for the center-of-mass coordinate. Spurious center-of-mass excitations are clearly identified.Conclusions: Results are converged with respect to the size of the model space and the method can be used to describe nuclear states with simple structure. Especially the ground-state energies were very close to what has been achieved by exact diagonalization. To obtain a closer match with experimental data, effects of three-nucleon forces, the scattering continuum, as well as additional configurations in the coupled-cluster approximations

  3. Cluster analysis of WIBS single-particle bioaerosol data

    NASA Astrophysics Data System (ADS)

    Robinson, N. H.; Allan, J. D.; Huffman, J. A.; Kaye, P. H.; Foot, V. E.; Gallagher, M.

    2013-02-01

    Hierarchical agglomerative cluster analysis was performed on single-particle multi-spatial data sets comprising optical diameter, asymmetry and three different fluorescence measurements, gathered using two dual Wideband Integrated Bioaerosol Sensors (WIBSs). The technique is demonstrated on measurements of various fluorescent and non-fluorescent polystyrene latex spheres (PSL) before being applied to two separate contemporaneous ambient WIBS data sets recorded in a forest site in Colorado, USA, as part of the BEACHON-RoMBAS project. Cluster analysis results between both data sets are consistent. Clusters are tentatively interpreted by comparison of concentration time series and cluster average measurement values to the published literature (of which there is a paucity) to represent the following: non-fluorescent accumulation mode aerosol; bacterial agglomerates; and fungal spores. To our knowledge, this is the first time cluster analysis has been applied to long-term online primary biological aerosol particle (PBAP) measurements. The novel application of this clustering technique provides a means for routinely reducing WIBS data to discrete concentration time series which are more easily interpretable, without the need for any a priori assumptions concerning the expected aerosol types. It can reduce the level of subjectivity compared to the more standard analysis approaches, which are typically performed by simple inspection of various ensemble data products. It also has the advantage of potentially resolving less populous or subtly different particle types. This technique is likely to become more robust in the future as fluorescence-based aerosol instrumentation measurement precision, dynamic range and the number of available metrics are improved.

  4. Learning-rate-dependent clustering and self-development in a network of coupled phase oscillators

    NASA Astrophysics Data System (ADS)

    Niyogi, Ritwik K.; English, L. Q.

    2009-12-01

    We investigate the role of the learning rate in a Kuramoto Model of coupled phase oscillators in which the coupling coefficients dynamically vary according to a Hebbian learning rule. According to the Hebbian theory, a synapse between two neurons is strengthened if they are simultaneously coactive. Two stable synchronized clusters in antiphase emerge when the learning rate is larger than a critical value. In such a fast learning scenario, the network eventually constructs itself into an all-to-all coupled structure, regardless of initial conditions in connectivity. In contrast, when learning is slower than this critical value, only a single synchronized cluster can develop. Extending our analysis, we explore whether self-development of neuronal networks can be achieved through an interaction between spontaneous neural synchronization and Hebbian learning. We find that self-development of such neural systems is impossible if learning is too slow. Finally, we demonstrate that similar to the acquisition and consolidation of long-term memory, this network is capable of generating and remembering stable patterns.

  5. Local Correlation Calculations Using Standard and Renormalized Coupled-Cluster Methods

    NASA Astrophysics Data System (ADS)

    Piecuch, Piotr; Li, Wei; Gour, Jeffrey

    2009-03-01

    Local correlation variants of the coupled-cluster (CC) theory with singles and doubles (CCSD) and CC methods with singles, doubles, and non-iterative triples, including CCSD(T) and the completely renormalized CR-CC(2,3) approach, are developed. The main idea of the resulting CIM-CCSD, CIM-CCSD(T), and CIM-CR-CC(2,3) methods is the realization of the fact that the total correlation energy of a large system can be obtained as a sum of contributions from the occupied orthonormal localized molecular orbitals and their respective occupied and unoccupied orbital domains. The CIM-CCSD, CIM-CCSD(T), and CIM-CR-CC(2,3) algorithms are characterized by the linear scaling of the total CPU time with the system size and embarrassing parallelism. By comparing the results of the canonical and CIM-CC calculations for normal alkanes and water clusters, it is demonstrated that the CIM-CCSD, CIM-CCSD(T), and CIM-CR-CC(2,3) approaches recover the corresponding canonical CC correlation energies to within 0.1 % or so, while offering savings in the computer effort by orders of magnitude. By examining the dissociation of dodecane into C11H23 and CH3 and several lowest-energy structures of the (H2O)n clusters, it is shown that the CIM-CC methods accurately reproduce the relative energetics of the corresponding canonical CC calculations.

  6. Holograms for laser diode: Single mode optical fiber coupling

    NASA Technical Reports Server (NTRS)

    Fuhr, P. L.

    1982-01-01

    The low coupling efficiency of semiconductor laser emissions into a single mode optical fibers place a severe restriction on their use. Associated with these conventional optical coupling techniques are stringent alignment sensitivities. Using holographic elements, the coupling efficiency may be increased and the alignment sensitivity greatly reduced. Both conventional and computer methods used in the generation of the holographic couplers are described and diagrammed. The reconstruction geometries used are shown to be somewhat restrictive but substantially less rigid than their conventional optical counterparts. Single and double hologram techniques are examined concerning their respective ease of fabrication and relative merits.

  7. Toward enabling large-scale open-shell equation-of-motion coupled cluster calculations: triplet states of β-carotene

    SciTech Connect

    Hu, Hanshi; Bhaskaran-Nair, Kiran; Apra, Edoardo; Govind, Niranjan; Kowalski, Karol

    2014-10-02

    In this paper we discuss the application of novel parallel implementation of the coupled cluster (CC) and equation-of-motion coupled cluster methods (EOMCC) in calculations of excitation energies of triplet states in beta-carotene. Calculated excitation energies are compared with experimental data, where available. We also provide a detailed description of the new parallel algorithms for iterative CC and EOMCC models involving single and doubles excitations.

  8. Single to quadruple quantum dots with tunable tunnel couplings

    SciTech Connect

    Takakura, T.; Noiri, A.; Obata, T.; Yoneda, J.; Yoshida, K.; Otsuka, T.; Tarucha, S.

    2014-03-17

    We prepare a gate-defined quadruple quantum dot to study the gate-tunability of single to quadruple quantum dots with finite inter-dot tunnel couplings. The measured charging energies of various double dots suggest that the dot size is governed by the gate geometry. For the triple and quadruple dots, we study the gate-tunable inter-dot tunnel couplings. For the triple dot, we find that the effective tunnel coupling between side dots significantly depends on the alignment of the center dot potential. These results imply that the present quadruple dot has a gate performance relevant for implementing spin-based four-qubits with controllable exchange couplings.

  9. Characterizing a nonclassical carbene with coupled cluster methods: cyclobutylidene.

    PubMed

    Wang, Xiao; Agarwal, Jay; Schaefer Iii, Henry F

    2016-09-21

    Carbenes represent a special class of reactive compounds that possess a lone pair of electrons on a carbon atom. Among the myriad examples of carbenes in the literature, cyclobutylidene stands out as a unique nonclassical compound that includes transannular interaction between opposing C1 and C3 carbon atoms within a four-membered ring. On its lowest potential energy surface (X[combining tilde](1)A'), cyclobutylidene quickly rearranges, following three reaction paths: (i) 1,2-H migration; (ii) 1,2-C migration; and, (iii) 1,3-H migration. Herein, this reactivity is examined with high-level coupled-cluster methods [up to CCSDT(Q)]. At this level of theory, combined with extrapolation techniques to obtain energies at the complete basis set (CBS) limit, the long-standing disparity between theoretical and experimental results is resolved. Specifically, cyclobutylidene is predicted to prefer 1,2-C migration rather than 1,2-H migration. Rate constants for the three reaction paths are obtained from canonical variational transition state theory (CVT) and yield reasonable agreement with existing experimental results. Further characterization of cyclobutylidene is also reported: the singlet-triplet gap (ΔES-T) is found to be -9.3 kcal mol(-1) at the CCSDT(Q)/CBS level of theory, and anharmonic vibrational frequencies are determined with second-order vibrational perturbation theory (VPT2). PMID:27539444

  10. Description of spin–orbit coupling in excited states with two-component methods based on approximate coupled-cluster theory

    SciTech Connect

    Krause, Katharina; Klopper, Wim

    2015-03-14

    A generalization of the approximated coupled-cluster singles and doubles method and the algebraic diagrammatic construction scheme up to second order to two-component spinors obtained from a relativistic Hartree–Fock calculation is reported. Computational results for zero-field splittings of atoms and monoatomic cations, triplet lifetimes of two organic molecules, and the spin-forbidden part of the UV/Vis absorption spectrum of tris(ethylenediamine)cobalt(III) are presented.

  11. Noniterative Multireference Coupled Cluster Methods on Heterogeneous CPU-GPU Systems

    SciTech Connect

    Bhaskaran-Nair, Kiran; Ma, Wenjing; Krishnamoorthy, Sriram; Villa, Oreste; van Dam, Hubertus JJ; Apra, Edoardo; Kowalski, Karol

    2013-04-09

    A novel parallel algorithm for non-iterative multireference coupled cluster (MRCC) theories, which merges recently introduced reference-level parallelism (RLP) [K. Bhaskaran-Nair, J.Brabec, E. Aprà, H.J.J. van Dam, J. Pittner, K. Kowalski, J. Chem. Phys. 137, 094112 (2012)] with the possibility of accelerating numerical calculations using graphics processing unit (GPU) is presented. We discuss the performance of this algorithm on the example of the MRCCSD(T) method (iterative singles and doubles and perturbative triples), where the corrections due to triples are added to the diagonal elements of the MRCCSD (iterative singles and doubles) effective Hamiltonian matrix. The performance of the combined RLP/GPU algorithm is illustrated on the example of the Brillouin-Wigner (BW) and Mukherjee (Mk) state-specific MRCCSD(T) formulations.

  12. Dynamic Polarizabilities of Polyaromatic Hydrocarbons Using Coupled-Cluster Linear Response Theory

    SciTech Connect

    Hammond, Jeffrey R.; Kowalski, Karol; De Jong, Wibe A.

    2007-10-14

    Coupled-cluster theory with single and double excitations (CCSD) is applied to the calculation of optical properties of large polyaromatic hydrocarbons. Dipole polarizabilities are reported for benzene, pyrene, and the oligoacenes sequence n=2-6. Dynamic polarizabilities were calculated on polyacences as large asa pentacene for a single frequency and for benzene and pyrene at many frequencies. The basis set effect was studied for benzene using a variety of basis sets in the Pople and Dunning families up to aug-cc-pVQZ and the Sadlej p VTZ basis, which was used exclusively for the largest molecules. Optimized geometries were evaluated for some of the compounds using HF, B3LYP, PBE0, MP2 and CCSD to understand the role of bond-length-alteration (BLA). Finally, the polarizability results ere compared to four common density-functionals (B3LYP, BLYP, PBE0, PBE).

  13. Relativistic coupled cluster study of diatomic compounds of Hg, Cn, and Fl

    SciTech Connect

    Borschevsky, A.; Pershina, V.; Eliav, E.; Kaldor, U.

    2014-08-28

    The structure and energetics of eight diatomic heavy-atom molecules are presented. These include the species MAu, M{sub 2}, and MHg, with M standing for the Hg, Cn (element 112), and Fl (element 114) atoms. The infinite-order relativistic 2-component Hamiltonian, known to closely reproduce 4-component results at lower computational cost, is used as framework. High-accuracy treatment of correlation is achieved by using the coupled cluster scheme with single, double, and perturbative triple excitations in large converged basis sets. The calculated interatomic separation and bond energy of Hg{sub 2}, the only compound with known experimental data, are in good agreement with measurements. The binding of Fl to Au is stronger than that of Cn, predicting stronger adsorption on gold surfaces. The bond in the M{sub 2} species is strongest for Fl{sub 2}, being of chemical nature; weaker bonds appear in Cn{sub 2} and Hg{sub 2}, which are bound by van der Waals interactions, with the former bound more strongly due to the smaller van der Waals radius. The same set of calculations was also performed using the relativistic density functional theory approach, in order to test the performance of the latter for these weakly bound systems with respect to the more accurate coupled cluster calculations. It was found that for the MAu species the B3LYP functional provides better agreement with the coupled cluster results than the B88/P86 functional. However, for the M{sub 2} and the MHg molecules, B3LYP tends to underestimate the binding energies.

  14. Relativistic coupled cluster study of diatomic compounds of Hg, Cn, and Fl.

    PubMed

    Borschevsky, A; Pershina, V; Eliav, E; Kaldor, U

    2014-08-28

    The structure and energetics of eight diatomic heavy-atom molecules are presented. These include the species MAu, M2, and MHg, with M standing for the Hg, Cn (element 112), and Fl (element 114) atoms. The infinite-order relativistic 2-component Hamiltonian, known to closely reproduce 4-component results at lower computational cost, is used as framework. High-accuracy treatment of correlation is achieved by using the coupled cluster scheme with single, double, and perturbative triple excitations in large converged basis sets. The calculated interatomic separation and bond energy of Hg2, the only compound with known experimental data, are in good agreement with measurements. The binding of Fl to Au is stronger than that of Cn, predicting stronger adsorption on gold surfaces. The bond in the M2 species is strongest for Fl2, being of chemical nature; weaker bonds appear in Cn2 and Hg2, which are bound by van der Waals interactions, with the former bound more strongly due to the smaller van der Waals radius. The same set of calculations was also performed using the relativistic density functional theory approach, in order to test the performance of the latter for these weakly bound systems with respect to the more accurate coupled cluster calculations. It was found that for the MAu species the B3LYP functional provides better agreement with the coupled cluster results than the B88/P86 functional. However, for the M2 and the MHg molecules, B3LYP tends to underestimate the binding energies. PMID:25173008

  15. Self-assembly of mixed-valence Co(II/III) and Ni(II) clusters: azide-bridged 1D single chain coordination polymers comprised of tetranuclear units, tetranuclear Co(II/III) complexes, ferromagnetically coupled azide-bridged tetranuclear, and hexanuclear Ni(II) complexes: synthesis, structural, and magnetic properties.

    PubMed

    Tandon, Santokh S; Bunge, Scott D; Rakosi, Robert; Xu, Zhiqiang; Thompson, Laurence K

    2009-09-01

    One-pot reactions between 2,6-diformyl-4-methylphenol (DFMP) and 2-aminoethanol (AE) in the presence of cobalt(II) salts [Co(ClO4)2, CoCl2, Co(CH3CO2)2, Co(NO3)2] and sodium azide result in the self-assembly of novel one-dimensional single chain mixed-valence cobalt coordination polymers {[Co2(II)Co2(III) (HL)2(OCH3)2(N3)3]ClO(4).5H2O.CH3OH}n (1), {[Co2(II)Co2(III) (HL)2(OCH3)2(N3)3]Cl.H2O}n (2) in which tetra-cobalt cationic units are bridged by symmetrical 1,3-azides, forming single chains; mixed valence neutral tetranuclear clusters [Co2(II)Co2(III) (HL)2(OCH3)2(N3)4]CH3OH.2H2O (3), [Co2(II)Co2(III)(HL)2(OCH3)2(N3)2(CH3CO2)2].2CH3OH.2H2O (4), and the cationic cluster [Co2(II) Co2(III) (HL)2(OCH3)2(CH3OH)2(N3)2](NO3)2 (5). In all these reactions, H3L, the potentially pentadentate (N2O3), trianionic double Schiff base ligand 2,6-bis[(2-hydroxy-ethylimino)-methyl]-4-methylphenol is formed. The reaction between DFMP and AE in the presence of nickel(ii) salts and sodium azide in methanol-water mixture results in the self-assembly of ferromagnetically coupled hexanuclear complexes [Ni6(H2L)2(HL-1)2(H2O)2(N3)6](ClO4)(2).2CH3OH (6), and [Ni6(H2L)2(HL-1)2(CH3OH)2(N3)6](BF4)2 (7), involving double (H3L) and single (H2L-1) Schiff base ligands, and a neutral tetranuclear complex [Ni4(H2L)2(OCH3)2(CH3CO2)2(N3)2] (8) with only double Schiff-base (H3L). In these complexes, the nature of the anion and the reaction conditions seem to play an important role in directing the formation of tetranuclear, hexanuclear or polymeric clusters. All complexes involve divacant double cubane-type cores containing three to four different types of bridging ligands (phenoxy, azido, methoxy/alkoxy, and acetate). Variable temperature magnetic properties of these spin coupled clusters have been investigated and magneto-structural correlations have been established. PMID:19672499

  16. Communication: Spin densities within a unitary group based spin-adapted open-shell coupled-cluster theory: Analytic evaluation of isotropic hyperfine-coupling constants for the combinatoric open-shell coupled-cluster scheme

    SciTech Connect

    Datta, Dipayan Gauss, Jürgen

    2015-07-07

    We report analytical calculations of isotropic hyperfine-coupling constants in radicals using a spin-adapted open-shell coupled-cluster theory, namely, the unitary group based combinatoric open-shell coupled-cluster (COSCC) approach within the singles and doubles approximation. A scheme for the evaluation of the one-particle spin-density matrix required in these calculations is outlined within the spin-free formulation of the COSCC approach. In this scheme, the one-particle spin-density matrix for an open-shell state with spin S and M{sub S} = + S is expressed in terms of the one- and two-particle spin-free (charge) density matrices obtained from the Lagrangian formulation that is used for calculating the analytic first derivatives of the energy. Benchmark calculations are presented for NO, NCO, CH{sub 2}CN, and two conjugated π-radicals, viz., allyl and 1-pyrrolyl in order to demonstrate the performance of the proposed scheme.

  17. Ab initio Bogoliubov coupled cluster theory for open-shell nuclei

    SciTech Connect

    Signoracci, Angelo J.; Duguet, Thomas; Hagen, Gaute; Jansen, G. R.

    2015-06-29

    Background: Ab initio many-body methods have been developed over the past 10 yr to address closed-shell nuclei up to mass A≈130 on the basis of realistic two- and three-nucleon interactions. A current frontier relates to the extension of those many-body methods to the description of open-shell nuclei. Several routes to address open-shell nuclei are currently under investigation, including ideas that exploit spontaneous symmetry breaking. Purpose: Singly open-shell nuclei can be efficiently described via the sole breaking of U(1) gauge symmetry associated with particle-number conservation as a way to account for their superfluid character. While this route was recently followed within the framework of self-consistent Green's function theory, the goal of the present work is to formulate a similar extension within the framework of coupled cluster theory. Methods: We formulate and apply Bogoliubov coupled cluster (BCC) theory, which consists of representing the exact ground-state wave function of the system as the exponential of a quasiparticle excitation cluster operator acting on a Bogoliubov reference state. Equations for the ground-state energy and the cluster amplitudes are derived at the singles and doubles level (BCCSD) both algebraically and diagrammatically. The formalism includes three-nucleon forces at the normal-ordered two-body level. The first BCC code is implemented in m scheme, which will permit the treatment of doubly open-shell nuclei via the further breaking of SU(2) symmetry associated with angular momentum conservation. Results: Proof-of-principle calculations in an Nmax=6 spherical harmonic oscillator basis for 16,18O and 18Ne in the BCCD approximation are in good agreement with standard coupled cluster results with the same chiral two-nucleon interaction, while 20O and 20Mg display underbinding relative to experiment. The breaking of U(1) symmetry, monitored by computing the variance

  18. Ab initio Bogoliubov coupled cluster theory for open-shell nuclei

    DOE PAGESBeta

    Signoracci, Angelo J.; Duguet, Thomas; Hagen, Gaute; Jansen, G. R.

    2015-06-29

    Background: Ab initio many-body methods have been developed over the past 10 yr to address closed-shell nuclei up to mass A≈130 on the basis of realistic two- and three-nucleon interactions. A current frontier relates to the extension of those many-body methods to the description of open-shell nuclei. Several routes to address open-shell nuclei are currently under investigation, including ideas that exploit spontaneous symmetry breaking. Purpose: Singly open-shell nuclei can be efficiently described via the sole breaking of U(1) gauge symmetry associated with particle-number conservation as a way to account for their superfluid character. While this route was recently followed withinmore » the framework of self-consistent Green's function theory, the goal of the present work is to formulate a similar extension within the framework of coupled cluster theory. Methods: We formulate and apply Bogoliubov coupled cluster (BCC) theory, which consists of representing the exact ground-state wave function of the system as the exponential of a quasiparticle excitation cluster operator acting on a Bogoliubov reference state. Equations for the ground-state energy and the cluster amplitudes are derived at the singles and doubles level (BCCSD) both algebraically and diagrammatically. The formalism includes three-nucleon forces at the normal-ordered two-body level. The first BCC code is implemented in m scheme, which will permit the treatment of doubly open-shell nuclei via the further breaking of SU(2) symmetry associated with angular momentum conservation. Results: Proof-of-principle calculations in an Nmax=6 spherical harmonic oscillator basis for 16,18O and 18Ne in the BCCD approximation are in good agreement with standard coupled cluster results with the same chiral two-nucleon interaction, while 20O and 20Mg display underbinding relative to experiment. The breaking of U(1) symmetry, monitored by computing the variance associated with the particle-number operator, is

  19. Electrochemical Single-Molecule Transistors with Optimized Gate Coupling.

    PubMed

    Osorio, Henrry M; Catarelli, Samantha; Cea, Pilar; Gluyas, Josef B G; Hartl, František; Higgins, Simon J; Leary, Edmund; Low, Paul J; Martín, Santiago; Nichols, Richard J; Tory, Joanne; Ulstrup, Jens; Vezzoli, Andrea; Milan, David C; Zeng, Qiang

    2015-11-18

    Electrochemical gating at the single molecule level of viologen molecular bridges in ionic liquids is examined. Contrary to previous data recorded in aqueous electrolytes, a clear and sharp peak in the single molecule conductance versus electrochemical potential data is obtained in ionic liquids. These data are rationalized in terms of a two-step electrochemical model for charge transport across the redox bridge. In this model the gate coupling in the ionic liquid is found to be fully effective with a modeled gate coupling parameter, ξ, of unity. This compares to a much lower gate coupling parameter of 0.2 for the equivalent aqueous gating system. This study shows that ionic liquids are far more effective media for gating the conductance of single molecules than either solid-state three-terminal platforms created using nanolithography, or aqueous media. PMID:26488257

  20. Analytical Energy Gradients for Excited-State Coupled-Cluster Methods

    NASA Astrophysics Data System (ADS)

    Wladyslawski, Mark; Nooijen, Marcel

    The equation-of-motion coupled-cluster (EOM-CC) and similarity transformed equation-of-motion coupled-cluster (STEOM-CC) methods have been firmly established as accurate and routinely applicable extensions of single-reference coupled-cluster theory to describe electronically excited states. An overview of these methods is provided, with emphasis on the many-body similarity transform concept that is the key to a rationalization of their accuracy. The main topic of the paper is the derivation of analytical energy gradients for such non-variational electronic structure approaches, with an ultimate focus on obtaining their detailed algebraic working equations. A general theoretical framework using Lagrange's method of undetermined multipliers is presented, and the method is applied to formulate the EOM-CC and STEOM-CC gradients in abstract operator terms, following the previous work in [P.G. Szalay, Int. J. Quantum Chem. 55 (1995) 151] and [S.R. Gwaltney, R.J. Bartlett, M. Nooijen, J. Chem. Phys. 111 (1999) 58]. Moreover, the systematics of the Lagrange multiplier approach is suitable for automation by computer, enabling the derivation of the detailed derivative equations through a standardized and direct procedure. To this end, we have developed the SMART (Symbolic Manipulation and Regrouping of Tensors) package of automated symbolic algebra routines, written in the Mathematica programming language. The SMART toolkit provides the means to expand, differentiate, and simplify equations by manipulation of the detailed algebraic tensor expressions directly. The Lagrangian multiplier formulation establishes a uniform strategy to perform the automated derivation in a standardized manner: A Lagrange multiplier functional is constructed from the explicit algebraic equations that define the energy in the electronic method; the energy functional is then made fully variational with respect to all of its parameters, and the symbolic differentiations directly yield the explicit

  1. Communication: multireference equation of motion coupled cluster: a transform and diagonalize approach to electronic structure.

    PubMed

    Nooijen, Marcel; Demel, Ondřej; Datta, Dipayan; Kong, Liguo; Shamasundar, K R; Lotrich, V; Huntington, Lee M; Neese, Frank

    2014-02-28

    The novel multireference equation-of-motion coupled-cluster (MREOM-CC) approaches provide versatile and accurate access to a large number of electronic states. The methods proceed by a sequence of many-body similarity transformations and a subsequent diagonalization of the transformed Hamiltonian over a compact subspace. The transformed Hamiltonian is a connected entity and preserves spin- and spatial symmetry properties of the original Hamiltonian, but is no longer Hermitean. The final diagonalization spaces are defined in terms of a complete active space (CAS) and limited excitations (1h, 1p, 2h, …) out of the CAS. The methods are invariant to rotations of orbitals within their respective subspaces (inactive, active, external). Applications to first row transition metal atoms (Cr, Mn, and Fe) are presented yielding results for up to 524 electronic states (for Cr) with an rms error compared to experiment of about 0.05 eV. The accuracy of the MREOM family of methods is closely related to its favorable extensivity properties as illustrated by calculations on the O2-O2 dimer. The computational costs of the transformation steps in MREOM are comparable to those of closed-shell Coupled Cluster Singles and Doubles (CCSD) approach. PMID:24588141

  2. Communication: Multireference equation of motion coupled cluster: A transform and diagonalize approach to electronic structure

    SciTech Connect

    Nooijen, Marcel; Huntington, Lee M.; Demel, Ondřej; Datta, Dipayan; Kong, Liguo; Shamasundar, K. R.; Lotrich, V.; Neese, Frank

    2014-02-28

    The novel multireference equation-of-motion coupled-cluster (MREOM-CC) approaches provide versatile and accurate access to a large number of electronic states. The methods proceed by a sequence of many-body similarity transformations and a subsequent diagonalization of the transformed Hamiltonian over a compact subspace. The transformed Hamiltonian is a connected entity and preserves spin- and spatial symmetry properties of the original Hamiltonian, but is no longer Hermitean. The final diagonalization spaces are defined in terms of a complete active space (CAS) and limited excitations (1h, 1p, 2h, …) out of the CAS. The methods are invariant to rotations of orbitals within their respective subspaces (inactive, active, external). Applications to first row transition metal atoms (Cr, Mn, and Fe) are presented yielding results for up to 524 electronic states (for Cr) with an rms error compared to experiment of about 0.05 eV. The accuracy of the MREOM family of methods is closely related to its favorable extensivity properties as illustrated by calculations on the O{sub 2}–O{sub 2} dimer. The computational costs of the transformation steps in MREOM are comparable to those of closed-shell Coupled Cluster Singles and Doubles (CCSD) approach.

  3. Equation-of-motion coupled-cluster method for doubly ionized states with spin-orbit coupling.

    PubMed

    Wang, Zhifan; Hu, Shu; Wang, Fan; Guo, Jingwei

    2015-04-14

    In this work, we report implementation of the equation-of-motion coupled-cluster method for doubly ionized states (EOM-DIP-CC) with spin-orbit coupling (SOC) using a closed-shell reference. Double ionization potentials (DIPs) are calculated in the space spanned by 2h and 3h1p determinants with the EOM-DIP-CC approach at the CC singles and doubles level (CCSD). Time-reversal symmetry together with spatial symmetry is exploited to reduce computational effort. To circumvent the problem of unstable dianion references when diffuse basis functions are included, nuclear charges are scaled. Effect of this stabilization potential on DIPs is estimated based on results from calculations using a small basis set without diffuse basis functions. DIPs and excitation energies of some low-lying states for a series of open-shell atoms and molecules containing heavy elements with two unpaired electrons have been calculated with the EOM-DIP-CCSD approach. Results show that this approach is able to afford a reliable description on SOC splitting. Furthermore, the EOM-DIP-CCSD approach is shown to provide reasonable excitation energies for systems with a dianion reference when diffuse basis functions are not employed. PMID:25877564

  4. Equation-of-motion coupled-cluster method for doubly ionized states with spin-orbit coupling

    SciTech Connect

    Wang, Zhifan; Hu, Shu; Guo, Jingwei; Wang, Fan

    2015-04-14

    In this work, we report implementation of the equation-of-motion coupled-cluster method for doubly ionized states (EOM-DIP-CC) with spin-orbit coupling (SOC) using a closed-shell reference. Double ionization potentials (DIPs) are calculated in the space spanned by 2h and 3h1p determinants with the EOM-DIP-CC approach at the CC singles and doubles level (CCSD). Time-reversal symmetry together with spatial symmetry is exploited to reduce computational effort. To circumvent the problem of unstable dianion references when diffuse basis functions are included, nuclear charges are scaled. Effect of this stabilization potential on DIPs is estimated based on results from calculations using a small basis set without diffuse basis functions. DIPs and excitation energies of some low-lying states for a series of open-shell atoms and molecules containing heavy elements with two unpaired electrons have been calculated with the EOM-DIP-CCSD approach. Results show that this approach is able to afford a reliable description on SOC splitting. Furthermore, the EOM-DIP-CCSD approach is shown to provide reasonable excitation energies for systems with a dianion reference when diffuse basis functions are not employed.

  5. A state-specific partially internally contracted multireference coupled cluster approach.

    PubMed

    Datta, Dipayan; Kong, Liguo; Nooijen, Marcel

    2011-06-01

    A state-specific partially internally contracted multireference coupled cluster approach is presented for general complete active spaces with arbitrary number of active electrons. The dominant dynamical correlation is included via an exponential parametrization of internally contracted cluster operators ( ̂T) which excite electrons from a multideterminantal reference function. The remaining dynamical correlation and relaxation effects are included via a diagonalization of the transformed Hamiltonian ̅Ĥ =e(- ̂T)Ĥe( ̂T) in the multireference configuration interaction singles space in an uncontracted fashion. A new set of residual equations for determining the internally contracted cluster amplitudes is proposed. The second quantized matrix elements of ̅Ĥ , expressed using the extended normal ordering of Kutzelnigg and Mukherjee, are used as the residual equations without projection onto the excited configurations. These residual equations, referred to as the many-body residuals, do not have any near-singularity and thus, should allow one to solve all the amplitudes without discarding any. There are some relatively minor remaining convergence issues that may arise from an attempt to solve all the amplitudes and an initial analysis is provided in this paper. Applications to the bond-stretching potential energy surfaces for N(2), CO, and the low-lying electronic states of C(2) indicate clear improvements of the results using the many-body residuals over the conventional projected residual equations. PMID:21663353

  6. A state-specific partially internally contracted multireference coupled cluster approach

    NASA Astrophysics Data System (ADS)

    Datta, Dipayan; Kong, Liguo; Nooijen, Marcel

    2011-06-01

    A state-specific partially internally contracted multireference coupled cluster approach is presented for general complete active spaces with arbitrary number of active electrons. The dominant dynamical correlation is included via an exponential parametrization of internally contracted cluster operators (hat{T}) which excite electrons from a multideterminantal reference function. The remaining dynamical correlation and relaxation effects are included via a diagonalization of the transformed Hamiltonian {{hat{overline{H}}=e^{-hat{T}}hat{H}e^{hat{T}}}} in the multireference configuration interaction singles space in an uncontracted fashion. A new set of residual equations for determining the internally contracted cluster amplitudes is proposed. The second quantized matrix elements of {{hat{overline{H}}}}, expressed using the extended normal ordering of Kutzelnigg and Mukherjee, are used as the residual equations without projection onto the excited configurations. These residual equations, referred to as the many-body residuals, do not have any near-singularity and thus, should allow one to solve all the amplitudes without discarding any. There are some relatively minor remaining convergence issues that may arise from an attempt to solve all the amplitudes and an initial analysis is provided in this paper. Applications to the bond-stretching potential energy surfaces for N2, CO, and the low-lying electronic states of C2 indicate clear improvements of the results using the many-body residuals over the conventional projected residual equations.

  7. Strong Single-Photon Coupling in Superconducting Quantum Magnetomechanics

    NASA Astrophysics Data System (ADS)

    Via, Guillem; Kirchmair, Gerhard; Romero-Isart, Oriol

    2015-04-01

    We show that the inductive coupling between the quantum mechanical motion of a superconducting microcantilever and a flux-dependent microwave quantum circuit can attain the strong single-photon nanomechanical coupling regime with feasible experimental parameters. We propose to use a superconducting strip, which is in the Meissner state, at the tip of a cantilever. A pickup coil collects the flux generated by the sheet currents induced by an external quadrupole magnetic field centered at the strip location. The position-dependent magnetic response of the superconducting strip, enhanced by both diamagnetism and demagnetizing effects, leads to a strong magnetomechanical coupling to quantum circuits.

  8. Development of New Open-Shell Perturbation and Coupled-Cluster Theories Based on Symmetric Spin Orbitals

    NASA Technical Reports Server (NTRS)

    Lee, Timothy J.; Arnold, James O. (Technical Monitor)

    1994-01-01

    A new spin orbital basis is employed in the development of efficient open-shell coupled-cluster and perturbation theories that are based on a restricted Hartree-Fock (RHF) reference function. The spin orbital basis differs from the standard one in the spin functions that are associated with the singly occupied spatial orbital. The occupied orbital (in the spin orbital basis) is assigned the delta(+) = 1/square root of 2(alpha+Beta) spin function while the unoccupied orbital is assigned the delta(-) = 1/square root of 2(alpha-Beta) spin function. The doubly occupied and unoccupied orbitals (in the reference function) are assigned the standard alpha and Beta spin functions. The coupled-cluster and perturbation theory wave functions based on this set of "symmetric spin orbitals" exhibit much more symmetry than those based on the standard spin orbital basis. This, together with interacting space arguments, leads to a dramatic reduction in the computational cost for both coupled-cluster and perturbation theory. Additionally, perturbation theory based on "symmetric spin orbitals" obeys Brillouin's theorem provided that spin and spatial excitations are both considered. Other properties of the coupled-cluster and perturbation theory wave functions and models will be discussed.

  9. Atomization energies from coupled-cluster calculations augmented with explicitly-correlated perturbation theory.

    SciTech Connect

    Klopper, W.; Ruscic, B.; Tew, D. P.; Bischoff, F. A.; Wolfsegger, S.; Chemical Sciences and Engineering Division; Univ. Karlsruhe

    2008-11-17

    The atomization energies of the 105 molecules in the test set of Bakowies [D. Bakowies, J. Chem. Phys. 127 (2007) 084105] have been computed with an estimated standard deviation (from the values compiled in the Active Thermochemical Tables) of {+-}0.1 kJ/mol per valence electron in the molecule. Equilibrium geometries and harmonic vibrational frequencies were calculated at the all-electron CCSD(T)/cc-pCVTZ level, that is, at the level of coupled-cluster theory with singles, doubles and non-iterative triples in a correlation-consistent polarized core-valence triple-zeta basis. Single-point energy calculations were performed at the all-electron CCSD(T) level in a correlation-consistent polarized core-valence quadruple-zeta basis (cc-pCVQZ), and several corrections were added: (i) a correction for the basis-set truncation error, obtained from second-order perturbation theory using Slater-type geminals (MP2-F12 theory), (ii) a correction for the effect of anharmonicity on the zero-point vibrational energy, (iii) a relativistic correction, (iv) a correction for the difference between the full CCSDT model (coupled-cluster theory with singles, doubles and triples) and the CCSD(T) approximation, and (v) a correction for connected quadruple excitations obtained from CCSDT(Q) calculations. The correction for the basis-set truncation error was obtained from MP2-F12 calculations by scaling the MP2 basis-set truncation error by an empirically optimized 'interference factor' of f{sub int} = 0.78. The reference values from the Active Thermochemical Tables for 73 molecules in the test set, the equilibrium geometries, the harmonic vibrational frequencies, and all of the energy corrections represent valuable data for performance assessments of additivity schemes that will be developed in the future, in which the basis-set truncation error will be calculated at the level of coupled-cluster theory using Slater-type geminals (CC-F12 theory). Such a scheme will be free of empirical

  10. Single molecule detection using charge-coupled device array technology

    SciTech Connect

    Denton, M.B.

    1992-07-29

    A technique for the detection of single fluorescent chromophores in a flowing stream is under development. This capability is an integral facet of a rapid DNA sequencing scheme currently being developed by Los Alamos National Laboratory. In previous investigations, the detection sensitivity was limited by the background Raman emission from the water solvent. A detection scheme based on a novel mode of operating a Charge-Coupled Device (CCD) is being developed which should greatly enhance the discrimination between fluorescence from a single molecule and the background Raman scattering from the solvent. Register shifts between rows in the CCD are synchronized with the sample flow velocity so that fluorescence from a single molecule is collected in a single moving charge packet occupying an area approaching that of a single pixel while the background is spread evenly among a large number of pixels. Feasibility calculations indicate that single molecule detection should be achieved with an excellent signal-to-noise ratio.

  11. High-brightness fiber-coupled single emitter arrays

    NASA Astrophysics Data System (ADS)

    Heinemann, Stefan; Regaard, Boris; Schmidt, Torsten; Lewis, Ben

    2009-02-01

    Commercial high power fiber coupled diode lasers reach power levels of 200W from a 0.2mm fiber, NA=0.2. 2D fiber coupled single emitter (SE) arrays are described delivering 500W from a 0.2mm fiber. The beam quality of standard 90μm single emitter (SE) is 6mm*mrad (slow axis) and 0.7mm*mrad (fast axis) including errors from fast axis lensing. 3 SEs (24) can be arranged in slow axis (fast axis) to fill the aperture for coupling into a 0.2mm fiber, NA=0.2. For high efficiency, beam shaping optics are avoided. A lens array for slow axis collimation and a focusing optic complete the fiber coupled module. 44 SEs' are arranged as a 2D array, polarization multiplexed and coupled into a 0.2mm fiber, NA=0.2. 62% optical to optical and 75% coupling efficiency are achieved, close to the modeled coupling efficiency of 80%. Alignment tolerances in the system do account for additional losses. Precise manufacturing processes are essential. The SEs on submounts are soldered in one reflow process to a common heatsink and FAC-lensing station automatically aligns the lens based on image processing ensuring minimum total lensing errors (focusing and pointing) of each SE to <15% of total spot size. Tighter tolerances during SE mounting, improved fast axis collimation and a redesigned coupling optic will increase the coupling efficiency to 80% resulting in 410W linear polarized output from the 0.2mm fiber, NA=0.2. Polarization (800W) and dense wavelength multiplexing (1.4kW) open the door to kilowatt level.

  12. Equations of explicitly-correlated coupled-cluster methods.

    PubMed

    Shiozaki, Toru; Kamiya, Muneaki; Hirata, So; Valeev, Edward F

    2008-06-21

    The tensor contraction expressions defining a variety of high-rank coupled-cluster energies and wave functions that include the interelectronic distances (r(12)) explicitly (CC-R12) have been derived with the aid of a newly-developed computerized symbolic algebra smith. Efficient computational sequences to perform these tensor contractions have also been suggested, defining intermediate tensors-some reusable-as a sum of binary tensor contractions. smith can elucidate the index permutation symmetry of intermediate tensors that arise from a Slater-determinant expectation value of any number of excitation, deexcitation and other general second-quantized operators. smith also automates additional algebraic transformation steps specific to R12 methods, i.e. the identification and isolation of the special intermediates that need to be evaluated analytically and the resolution-of-the-identity insertion to facilitate high-dimensional molecular integral computation. The tensor contraction expressions defining the CC-R12 methods including through the connected quadruple excitation operator (CCSDTQ-R12) have been documented and efficient computational sequences have been suggested not just for the ground state but also for excited states via the equation-of-motion formalism (EOM-CC-R12) and for the so-called Lambda equation (Lambda-CC-R12) of the CC analytical gradient theory. Additional equations (the geminal amplitude equation) arise in CC-R12 that need to be solved to determine the coefficients multiplying the r(12)-dependent factors. The operation cost of solving the geminal amplitude equations of rank-k CC-R12 and EOM-CC-R12 (right-hand side) scales as O(n(6)) (k = 2) or O(n(7)) (k > or = 3) with the number of orbitals n and is surpassed by the cost of solving the usual amplitude equations O(n(2k+2)). While the complexity of the geminal amplitude equations of Lambda- and EOM-CC-R12 (left-hand side) nominally scales as O(n(2k+2)), it is less than that of the other O(n(2k

  13. Waveguide-Coupled Superconducting Nanowire Single-Photon Detectors

    NASA Technical Reports Server (NTRS)

    Beyer, Andrew D.; Briggs, Ryan M.; Marsili, Francesco; Cohen, Justin D.; Meenehan, Sean M.; Painter, Oskar J.; Shaw, Matthew D.

    2015-01-01

    We have demonstrated WSi-based superconducting nanowire single-photon detectors coupled to SiNx waveguides with integrated ring resonators. This photonics platform enables the implementation of robust and efficient photon-counting detectors with fine spectral resolution near 1550 nm.

  14. Implementation of High-Order Multireference Coupled-Cluster Methods on Intel Many Integrated Core Architecture.

    PubMed

    Aprà, E; Kowalski, K

    2016-03-01

    In this paper we discuss the implementation of multireference coupled-cluster formalism with singles, doubles, and noniterative triples (MRCCSD(T)), which is capable of taking advantage of the processing power of the Intel Xeon Phi coprocessor. We discuss the integration of two levels of parallelism underlying the MRCCSD(T) implementation with computational kernels designed to offload the computationally intensive parts of the MRCCSD(T) formalism to Intel Xeon Phi coprocessors. Special attention is given to the enhancement of the parallel performance by task reordering that has improved load balancing in the noniterative part of the MRCCSD(T) calculations. We also discuss aspects regarding efficient optimization and vectorization strategies. PMID:26808463

  15. Connected triple excitations in coupled-cluster calculations of hyperpolarizabilities: Neon

    NASA Technical Reports Server (NTRS)

    Rice, Julia E.; Scuseria, Gustavo E.; Lee, Timothy J.; Taylor, Peter R.; Almloef, Jan

    1992-01-01

    We have calculated the second hyperpolarizability gamma of neon using the CCSD(T) method. The accuracy of the CCSD(T) approach has been established by explicit comparison with the single, double and triple excitation coupled-cluster (CCSDT) method using extended basis sets that are known to be adequate for the description of gamma. Our best estimate for gamma(sub 0) of 110 +/- 3 a.u. is in good agreement with other recent theoretical values and with Shelton's recent experimental estimate of 108 +/- 2 a.u. Comparison of the MP2 and CCSD(T) hyperpolarizability values indicates that MP2 gives a very good description of the electron correlation contribution to gamma(sub 0). We have combined MP2 frequency-dependent corrections with the CCSD(T) gamma(sub 0) to yield values of gamma(-2 omega;omega,omega,0) and gamma(exp K)(-omega;omega,0,0).

  16. Equation of motion coupled cluster methods for electron attachment and ionization potential in polyacenes

    SciTech Connect

    Bhaskaran-Nair, Kiran; Kowalski, Karol; Jarrell, Mark; Moreno, Juana; Shelton, William A.

    2015-11-05

    Polyacenes have attracted considerable attention due to their use in organic based optoelectronic materials. Polyacenes are polycyclic aromatic hydrocarbons composed of fused benzene rings. Key to understanding and design of new functional materials is an understanding of their excited state properties starting with their electron affinity (EA) and ionization potential (IP). We have developed a highly accurate and com- putationally e*fficient EA/IP equation of motion coupled cluster singles and doubles (EA/IP-EOMCCSD) method that is capable of treating large systems and large basis set. In this study we employ the EA/IP-EOMCCSD method to calculate the electron affinity and ionization potential of naphthalene, anthracene, tetracene, pentacene, hex- acene and heptacene. We have compared our results with other previous theoretical studies and experimental data. Our EA/IP results are in very good agreement with experiment and when compared with the other theoretical investigations our results represent the most accurate calculations as compared to experiment.

  17. Active-Space Coupled-Cluster Study of Electronic States of Be₃

    SciTech Connect

    Kowalski, Karol; Hirata, So; Wloch, M W.; Piecuch, Piotr; Windus, Theresa L.

    2005-08-15

    An automated implementation of the active-space coupled-cluster (CC) and equation-of-motion (EOM) CC methods with all singles and doubles, and triples defined via active orbitals (CCSDt, EOMCCSDt) employing Tensor Contraction Engine (TCE), is reported. The TCE-generated CCSDt/ codes are parallel and applicable to closed-and open-shell references. The effectiveness of the new code in describing electronic quasi-degeneracies is illustrated by the CCSDt / EOMCCSDt) calculations for the challenging Be₃system, which is characterized by a large number of low-lying excited states dominated by two-electron transitions and significant high order correlation effects in the ground electronic state. Different strategies for defining triple excitation s within the CCSDt / EOMCCSDt) approach are discussed.

  18. Ruprecht 106: The First Single Population Globular Cluster?

    NASA Astrophysics Data System (ADS)

    Villanova, S.; Geisler, D.; Carraro, G.; Moni Bidin, C.; Muñoz, C.

    2013-12-01

    All old Galactic globular clusters (GCs) studied in detail to date host at least two generations of stars, where the second is formed from gas polluted by processed material produced by massive stars of the first. This process can happen if the initial mass of the cluster exceeds a threshold above which ejecta are retained and a second generation is formed. A determination of this mass threshold is mandatory in order to understand how GCs form. We analyzed nine red giant branch stars belonging to the cluster Ruprecht 106. Targets were observed with the UVES@VLT2 spectrograph. Spectra cover a wide range and allowed us to measure abundances for light (O, Na, Mg, Al), α (Si, Ca, Ti), iron-peak (Sc, V, Cr, Mn, Fe, Co, Ni, Cu, Zn), and neutron-capture (Y, Zr, Ba, La, Ce, Pr, Nd, Sm, Eu, Dy, Pb) elements. Based on these abundances, we show that Ruprecht 106 is the first convincing example of a single-population GC (i.e., a true simple stellar population), although the sample is relatively small. This result is supported also by an independent photometric test and by the horizontal branch morphology and the dynamical state. It is old (~12 Gyr) and, at odds with other GCs, has no α-enhancement. The material it formed from was contaminated by both s- and r-process elements. The abundance pattern points toward an extragalactic origin. Its present-day mass (M = 104.83 M ⊙) can be assumed as a strong lower limit for the initial mass threshold below which no second generation is formed. Clearly, its initial mass must have been significantly greater, but we have no current constraints on the amount of mass loss during its evolution.

  19. Ruprecht 106: The first single population globular cluster?

    SciTech Connect

    Villanova, S.; Geisler, D.; Muñoz, C.; Carraro, G.; Moni Bidin, C.

    2013-12-01

    All old Galactic globular clusters (GCs) studied in detail to date host at least two generations of stars, where the second is formed from gas polluted by processed material produced by massive stars of the first. This process can happen if the initial mass of the cluster exceeds a threshold above which ejecta are retained and a second generation is formed. A determination of this mass threshold is mandatory in order to understand how GCs form. We analyzed nine red giant branch stars belonging to the cluster Ruprecht 106. Targets were observed with the UVES@VLT2 spectrograph. Spectra cover a wide range and allowed us to measure abundances for light (O, Na, Mg, Al), α (Si, Ca, Ti), iron-peak (Sc, V, Cr, Mn, Fe, Co, Ni, Cu, Zn), and neutron-capture (Y, Zr, Ba, La, Ce, Pr, Nd, Sm, Eu, Dy, Pb) elements. Based on these abundances, we show that Ruprecht 106 is the first convincing example of a single-population GC (i.e., a true simple stellar population), although the sample is relatively small. This result is supported also by an independent photometric test and by the horizontal branch morphology and the dynamical state. It is old (∼12 Gyr) and, at odds with other GCs, has no α-enhancement. The material it formed from was contaminated by both s- and r-process elements. The abundance pattern points toward an extragalactic origin. Its present-day mass (M = 10{sup 4.83} M {sub ☉}) can be assumed as a strong lower limit for the initial mass threshold below which no second generation is formed. Clearly, its initial mass must have been significantly greater, but we have no current constraints on the amount of mass loss during its evolution.

  20. A partial coupling power of single mode fiber fusion

    NASA Astrophysics Data System (ADS)

    Saktioto, Toto; Ali, Jalil; Rahman, Rosly Abdul; Fadhali, Mohammed; Zainal, Jasman

    2008-01-01

    Coupled fibers are successfully fabricated by injecting hydrogen flow at 1bar and fused slightly by unstable torch flame in the range of 800-1350°C. Optical parameters may vary significantly over wide range physical properties. Coupling coefficient and refractive index are estimated from the experimental result of the coupling ratio distribution from 1% to 75%. The change of structural and geometrical fiber affects the normalized frequency (V) even for single mode fibers. Coupling ratio as a function of coupling coefficient and separation of fiber axis changes with respect to V at coupling region. V is derived from radius, wavelength and refractive index parameters. Parametric variations are performed on the left and right hand side of the coupling region. At the center of the coupling region V is assumed constant. A partial power is modeled and derived using V, normalized lateral phase constant (u), and normalized lateral attenuation constant, (w) through the second kind of modified Bessel function of the l order, which obeys the normal mode, LP 01 and normalized propagation constant (b). Total power is maintained constant in order to comply with the energy conservation law. The power is integrated through V, u and w over the pulling length range of 7500-9500 μm for 1-D where radial and angle directions are ignored. The core radius of fiber significantly affects V and power partially at coupling region rather than wavelength and refractive index of core and cladding. This model has power phenomena in transmission and reflection for industrial application of coupled fibers.

  1. Cluster Consensus of Nonlinearly Coupled Multi-Agent Systems in Directed Graphs

    NASA Astrophysics Data System (ADS)

    Lu, Xiao-Qing; Francis, Austin; Chen, Shi-Hua

    2010-05-01

    We investigate the cluster consensus problem in directed networks of nonlinearly coupled multi-agent systems by using pinning control. Depending on the community structure generated by the group partition of the underlying digraph, various clusters can be made coherently independent by applying feedback injections to a fraction of the agents. Sufficient conditions for cluster consensus are obtained using algebraic graph theory and matrix theory and some simulations results are included to illustrate the method.

  2. Dynamic mechanisms of generation of oscillatory cluster patterns in a globally coupled chemical system

    NASA Astrophysics Data System (ADS)

    Rotstein, Horacio G.; Wu, Hui

    2012-09-01

    We use simulations and dynamical systems tools to investigate the mechanisms of generation of phase-locked and localized oscillatory cluster patterns in a globally coupled Oregonator model where the activator receives global feedback from the inhibitor, mimicking experimental results observed in the photosensitive Belousov-Zhabotinsky reaction. A homogeneous two-cluster system (two clusters with equal cluster size) displays antiphase patterns. Heterogenous two-cluster systems (two clusters with different sizes) display both phase-locked and localized patterns depending on the parameter values. In a localized pattern the oscillation amplitude of the largest cluster is roughly an order of magnitude smaller than the oscillation amplitude of the smaller cluster, reflecting the effect of self-inhibition exerted by the global feedback term. The transition from phase-locked to localized cluster patterns occurs as the intensity of global feedback increases. Three qualitatively different basic mechanisms, described previously for a globally coupled FitzHugh-Nagumo model, are involved in the generation of the observed patterns. The swing-and-release mechanism is related to the canard phenomenon (canard explosion of limit cycles) in relaxation oscillators. The hold-and-release and hold-and-escape mechanisms are related to the release and escape mechanisms in synaptically connected neural models. The methods we use can be extended to the investigation of oscillatory chemical reactions with other types of non-local coupling.

  3. Dynamic mechanisms of generation of oscillatory cluster patterns in a globally coupled chemical system.

    PubMed

    Rotstein, Horacio G; Wu, Hui

    2012-09-14

    We use simulations and dynamical systems tools to investigate the mechanisms of generation of phase-locked and localized oscillatory cluster patterns in a globally coupled Oregonator model where the activator receives global feedback from the inhibitor, mimicking experimental results observed in the photosensitive Belousov-Zhabotinsky reaction. A homogeneous two-cluster system (two clusters with equal cluster size) displays antiphase patterns. Heterogenous two-cluster systems (two clusters with different sizes) display both phase-locked and localized patterns depending on the parameter values. In a localized pattern the oscillation amplitude of the largest cluster is roughly an order of magnitude smaller than the oscillation amplitude of the smaller cluster, reflecting the effect of self-inhibition exerted by the global feedback term. The transition from phase-locked to localized cluster patterns occurs as the intensity of global feedback increases. Three qualitatively different basic mechanisms, described previously for a globally coupled FitzHugh-Nagumo model, are involved in the generation of the observed patterns. The swing-and-release mechanism is related to the canard phenomenon (canard explosion of limit cycles) in relaxation oscillators. The hold-and-release and hold-and-escape mechanisms are related to the release and escape mechanisms in synaptically connected neural models. The methods we use can be extended to the investigation of oscillatory chemical reactions with other types of non-local coupling. PMID:22979891

  4. Clustering and phase synchronization in populations of coupled phase oscillators

    NASA Astrophysics Data System (ADS)

    Cascallares, Guadalupe; Gleiser, Pablo M.

    2015-10-01

    In many species daily rhythms are endogenously generated by groups of coupled neurons that play the role of a circadian pacemaker. The adaptation of the circadian clock to environmental and seasonal changes has been proposed to be regulated by a dual oscillator system. In order to gain insight into this model, we analyzed the synchronization properties of two fully coupled groups of Kuramoto oscillators. Each group has an internal coupling parameter and the interaction between the two groups can be controlled by two parameters allowing for symmetric or non-symmetric coupling. We show that even for such a simple model counterintuitive behaviours take place, such as a global decrease in synchrony when the coupling between the groups is increased. Through a detailed analysis of the local synchronization processes we explain this behaviour.

  5. Symmetry broken and restored coupled-cluster theory: I. Rotational symmetry and angular momentum

    NASA Astrophysics Data System (ADS)

    Duguet, T.

    2015-02-01

    We extend coupled-cluster (CC) theory performed on top of a Slater determinant breaking rotational symmetry to allow for the exact restoration of the angular momentum at any truncation order. The main objective relates to the description of near-degenerate finite quantum systems with an open-shell character. As such, the newly developed many-body formalism offers a wealth of potential applications and further extensions dedicated to the ab initio description of, e.g., doubly open-shell atomic nuclei and molecule dissociation. The formalism, which encompasses both single-reference CC theory and projected Hartree-Fock theory as particular cases, permits the computation of usual sets of connected diagrams while consistently incorporating static correlations through the highly non-perturbative restoration of rotational symmetry. Interestingly, the yrast spectroscopy of the system, i.e. the lowest energy associated with each angular momentum, is accessed within a single calculation. A key difficulty presently overcome relates to the necessity to handle generalized energy and norm kernels for which naturally terminating CC expansions could be eventually obtained. The present work focuses on SU(2) but can be extended to any (locally) compact Lie group and to discrete groups, such as most point groups. In particular, the formalism will be soon generalized to U(1) symmetry associated with particle number conservation. This is relevant to Bogoliubov CC theory that was recently applied to singly open-shell nuclei.

  6. Cluster synchronization of starlike networks with normalized Laplacian coupling: master stability function approach

    NASA Astrophysics Data System (ADS)

    Kuptsov, Pavel V.; Kuptsova, Anna V.

    2016-04-01

    A generalized model of star-like network is suggested that takes into account non-additive coupling and nonlinear transformation of coupling variables. For this model a method of analysis of synchronized cluster stability is developed. Using this method three star-like networks based on Ikeda, predator-prey and Hénon maps are studied.

  7. Communication: A Jastrow factor coupled cluster theory for weak and strong electron correlation

    SciTech Connect

    Neuscamman, Eric

    2013-11-14

    We present a Jastrow-factor-inspired variant of coupled cluster theory that accurately describes both weak and strong electron correlation. Compatibility with quantum Monte Carlo allows for variational energy evaluations and an antisymmetric geminal power reference, two features not present in traditional coupled cluster that facilitate a nearly exact description of the strong electron correlations in minimal-basis N{sub 2} bond breaking. In double-ζ treatments of the HF and H{sub 2}O bond dissociations, where both weak and strong correlations are important, this polynomial cost method proves more accurate than either traditional coupled cluster or complete active space perturbation theory. These preliminary successes suggest a deep connection between the ways in which cluster operators and Jastrow factors encode correlation.

  8. Pinning cluster synchronization in an array of coupled neural networks under event-based mechanism.

    PubMed

    Li, Lulu; Ho, Daniel W C; Cao, Jinde; Lu, Jianquan

    2016-04-01

    Cluster synchronization is a typical collective behavior in coupled dynamical systems, where the synchronization occurs within one group, while there is no synchronization among different groups. In this paper, under event-based mechanism, pinning cluster synchronization in an array of coupled neural networks is studied. A new event-triggered sampled-data transmission strategy, where only local and event-triggering states are utilized to update the broadcasting state of each agent, is proposed to realize cluster synchronization of the coupled neural networks. Furthermore, a self-triggered pinning cluster synchronization algorithm is proposed, and a set of iterative procedures is given to compute the event-triggered time instants. Hence, this will reduce the computational load significantly. Finally, an example is given to demonstrate the effectiveness of the theoretical results. PMID:26829603

  9. A universal state-selective approach to multireference coupled-cluster non-iterative corrections

    NASA Astrophysics Data System (ADS)

    Kowalski, Karol

    2011-05-01

    A new form of the asymmetric energy functional for multireference coupled cluster (MRCC) theories is discussed from the point of view of an energy expansion in a quasidegenerate situation. The resulting expansion for the exact electronic energy can be used to define the non-iterative corrections to approximate MRCC approaches. In particular, we show that in the proposed framework the essential part of dynamic correlation can be encapsulated in the so-called correlation Hamiltonian, which in analogy to the effective Hamiltonian, is defined in the model space (M_0). The proper parametrization of the exact/trial wavefunctions leads to the cancellation of the overlap-type numerators and to a connected form of the correlation Hamiltonian and size-extensive energies. Within this parametrization, when the trial wavefunctions are determined without invoking a specific form of the MRCC sufficiency conditions, the ensuing correction can be universally applied to any type of the approximate MRCC method. The analogies with other MRCC triples corrections to MRCC theories with singles and doubles (MRCCSD) are outlined. In particular, we discuss the approach, which in analogy to the Λ-Mk-MRCCSD(T) method [F. A. Evangelista, E. Prochnow, J. Gauss, H. F. Schaefer III, J. Chem. Phys. 132, 074107 (2010)], introduces an approximate form of the triply-excited clusters into the effective and correlation Hamiltonians. Since the discussed corrections can be calculated as a sum of independent reference-related contributions, possible parallel algorithms are also outlined.

  10. Modal Coupling of Single Photon Emitters Within Nanofiber Waveguides.

    PubMed

    Gaio, Michele; Moffa, Maria; Castro-Lopez, Marta; Pisignano, Dario; Camposeo, Andrea; Sapienza, Riccardo

    2016-06-28

    Nanoscale generation of individual photons in confined geometries is an exciting research field aiming at exploiting localized electromagnetic fields for light manipulation. One of the outstanding challenges of photonic systems combining emitters with nanostructured media is the selective channelling of photons emitted by embedded sources into specific optical modes and their transport at distant locations in integrated systems. Here, we show that soft-matter nanofibers, electrospun with embedded emitters, combine subwavelength field localization and large broadband near-field coupling with low propagation losses. By momentum spectroscopy, we quantify the modal coupling efficiency identifying the regime of single-mode coupling. These nanofibers do not rely on resonant interactions, making them ideal for room-temperature operation, and offer a scalable platform for future quantum information technology. PMID:27203403

  11. Modal Coupling of Single Photon Emitters Within Nanofiber Waveguides

    PubMed Central

    2016-01-01

    Nanoscale generation of individual photons in confined geometries is an exciting research field aiming at exploiting localized electromagnetic fields for light manipulation. One of the outstanding challenges of photonic systems combining emitters with nanostructured media is the selective channelling of photons emitted by embedded sources into specific optical modes and their transport at distant locations in integrated systems. Here, we show that soft-matter nanofibers, electrospun with embedded emitters, combine subwavelength field localization and large broadband near-field coupling with low propagation losses. By momentum spectroscopy, we quantify the modal coupling efficiency identifying the regime of single-mode coupling. These nanofibers do not rely on resonant interactions, making them ideal for room-temperature operation, and offer a scalable platform for future quantum information technology. PMID:27203403

  12. Coupled resonator filter with single-layer acoustic coupler.

    PubMed

    Jamneala, Tiberiu; Small, Martha; Ruby, Rich; Larson, John D

    2008-10-01

    We discuss the operation of novel coupled-resonator filters with single-layer acoustic couplers. Our analysis employs the physical Mason model for acoustic resonators. Their simpler fabrication process is counterbalanced by the high acoustic attenuation of suitable coupler materials. At high levels of attenuation, both the phase and the acoustic impedance must be treated as complex quantities to accurately predict the filter insertion loss. We demonstrate that the typically poor near-band rejection of coupled resonator filters can be improved at the die level by connecting a small capacitance between the input and output of the filter to produce a pair of tunable transmission minima. We make use of these theoretical findings to fabricate coupled resonators filters operating at 2.45 GHz. PMID:18986880

  13. Photon pair source via two coupling single quantum emitters

    NASA Astrophysics Data System (ADS)

    Peng, Yong-Gang; Zheng, Yu-Jun

    2015-10-01

    We study the two coupling two-level single molecules driven by an external field as a photon pair source. The probability of emitting two photons, P2, is employed to describe the photon pair source quality in a short time, and the correlation coefficient RAB is employed to describe the photon pair source quality in a long time limit. The results demonstrate that the coupling single quantum emitters can be considered as a stable photon pair source. Project supported by the National Natural Science Foundation of China (Grand Nos. 91021009, 21073110, and 11374191), the Natural Science Foundation of Shandong Province, China (Grant No. ZR2013AQ020), the Postdoctoral Science Foundation of China (Grant No. 2013M531584), the Doctoral Program of Higher Education of China (Grant Nos. 20130131110005 and 20130131120006), and the Taishan Scholarship Project of Shandong Province, China.

  14. Development of the Multicomponent Coupled-Cluster Theory for Investigation of Multiexcitonic Interactions.

    PubMed

    Ellis, Benjamin H; Aggarwal, Somil; Chakraborty, Arindam

    2016-01-12

    Multicomponent systems are defined as chemical systems that require a quantum mechanical description of two or more different types of particles. Non-Born-Oppenheimer electron-nuclear interactions in molecules, electron-hole interactions in electronically excited nanoparticles, and electron-positron interactions are examples of physical systems that require a multicomponent quantum mechanical formalism. The central challenge in the theoretical treatment of multicomponent systems is capturing the many-body correlation effects that exist not only between particles of identical types (electron-electron) but also between particles of different types (electron-nuclear and electron-hole). In this work, the development and implementation of multicomponent coupled-cluster (mcCC) theory for treating particle-particle correlation in multicomponent systems are presented. This method provides a balanced treatment of many-particle correlation effects in a general multicomponent system while maintaining a size-consistent and size-extensive formalism. The coupled-cluster ansatz presented here is an extension of the electronic structure CCSD formulation for multicomponent systems and is defined as |ΨmcCC⟩ = eT1I+T2I+T1II+T2II+T11I,II+T12I,II+T21I,II+T22I,II|0I0II⟩. The cluster amplitudes in the mcCC wave function were obtained by projecting the mcCC Schrödinger equation onto a direct product space of singly and doubly excited states of type I and II particles and then solving the resulting mcCC equations iteratively. These equations were derived using an automated application of the generalized Wick’s theorem and were implemented using a computer-assisted source code generation approach. The applicability of the mcCC method was demonstrated by calculating ground state energies of multicomponent Hooke's atom and positronium hydride systems as well as by calculating exciton and biexciton binding energies in multiexcitonic systems. For each case, the mcCC results were

  15. Spin-orbit couplings within the equation-of-motion coupled-cluster framework: Theory, implementation, and benchmark calculations

    NASA Astrophysics Data System (ADS)

    Epifanovsky, Evgeny; Klein, Kerstin; Stopkowicz, Stella; Gauss, Jürgen; Krylov, Anna I.

    2015-08-01

    We present a formalism and an implementation for calculating spin-orbit couplings (SOCs) within the EOM-CCSD (equation-of-motion coupled-cluster with single and double substitutions) approach. The following variants of EOM-CCSD are considered: EOM-CCSD for excitation energies (EOM-EE-CCSD), EOM-CCSD with spin-flip (EOM-SF-CCSD), EOM-CCSD for ionization potentials (EOM-IP-CCSD) and electron attachment (EOM-EA-CCSD). We employ a perturbative approach in which the SOCs are computed as matrix elements of the respective part of the Breit-Pauli Hamiltonian using zeroth-order non-relativistic wave functions. We follow the expectation-value approach rather than the response-theory formulation for property calculations. Both the full two-electron treatment and the mean-field approximation (a partial account of the two-electron contributions) have been implemented and benchmarked using several small molecules containing elements up to the fourth row of the periodic table. The benchmark results show the excellent performance of the perturbative treatment and the mean-field approximation. When used with an appropriate basis set, the errors with respect to experiment are below 5% for the considered examples. The findings regarding basis-set requirements are in agreement with previous studies. The impact of different correlation treatment in zeroth-order wave functions is analyzed. Overall, the EOM-IP-CCSD, EOM-EA-CCSD, EOM-EE-CCSD, and EOM-SF-CCSD wave functions yield SOCs that agree well with each other (and with the experimental values when available). Using an EOM-CCSD approach that provides a more balanced description of the target states yields more accurate results.

  16. Spin-orbit couplings within the equation-of-motion coupled-cluster framework: Theory, implementation, and benchmark calculations.

    PubMed

    Epifanovsky, Evgeny; Klein, Kerstin; Stopkowicz, Stella; Gauss, Jürgen; Krylov, Anna I

    2015-08-14

    We present a formalism and an implementation for calculating spin-orbit couplings (SOCs) within the EOM-CCSD (equation-of-motion coupled-cluster with single and double substitutions) approach. The following variants of EOM-CCSD are considered: EOM-CCSD for excitation energies (EOM-EE-CCSD), EOM-CCSD with spin-flip (EOM-SF-CCSD), EOM-CCSD for ionization potentials (EOM-IP-CCSD) and electron attachment (EOM-EA-CCSD). We employ a perturbative approach in which the SOCs are computed as matrix elements of the respective part of the Breit-Pauli Hamiltonian using zeroth-order non-relativistic wave functions. We follow the expectation-value approach rather than the response-theory formulation for property calculations. Both the full two-electron treatment and the mean-field approximation (a partial account of the two-electron contributions) have been implemented and benchmarked using several small molecules containing elements up to the fourth row of the periodic table. The benchmark results show the excellent performance of the perturbative treatment and the mean-field approximation. When used with an appropriate basis set, the errors with respect to experiment are below 5% for the considered examples. The findings regarding basis-set requirements are in agreement with previous studies. The impact of different correlation treatment in zeroth-order wave functions is analyzed. Overall, the EOM-IP-CCSD, EOM-EA-CCSD, EOM-EE-CCSD, and EOM-SF-CCSD wave functions yield SOCs that agree well with each other (and with the experimental values when available). Using an EOM-CCSD approach that provides a more balanced description of the target states yields more accurate results. PMID:26277122

  17. Spin-orbit couplings within the equation-of-motion coupled-cluster framework: Theory, implementation, and benchmark calculations

    SciTech Connect

    Epifanovsky, Evgeny; Klein, Kerstin; Gauss, Jürgen; Stopkowicz, Stella; Krylov, Anna I.

    2015-08-14

    We present a formalism and an implementation for calculating spin-orbit couplings (SOCs) within the EOM-CCSD (equation-of-motion coupled-cluster with single and double substitutions) approach. The following variants of EOM-CCSD are considered: EOM-CCSD for excitation energies (EOM-EE-CCSD), EOM-CCSD with spin-flip (EOM-SF-CCSD), EOM-CCSD for ionization potentials (EOM-IP-CCSD) and electron attachment (EOM-EA-CCSD). We employ a perturbative approach in which the SOCs are computed as matrix elements of the respective part of the Breit-Pauli Hamiltonian using zeroth-order non-relativistic wave functions. We follow the expectation-value approach rather than the response-theory formulation for property calculations. Both the full two-electron treatment and the mean-field approximation (a partial account of the two-electron contributions) have been implemented and benchmarked using several small molecules containing elements up to the fourth row of the periodic table. The benchmark results show the excellent performance of the perturbative treatment and the mean-field approximation. When used with an appropriate basis set, the errors with respect to experiment are below 5% for the considered examples. The findings regarding basis-set requirements are in agreement with previous studies. The impact of different correlation treatment in zeroth-order wave functions is analyzed. Overall, the EOM-IP-CCSD, EOM-EA-CCSD, EOM-EE-CCSD, and EOM-SF-CCSD wave functions yield SOCs that agree well with each other (and with the experimental values when available). Using an EOM-CCSD approach that provides a more balanced description of the target states yields more accurate results.

  18. Spin-orbit coupling effects in gold clusters: The case of Au13

    NASA Astrophysics Data System (ADS)

    Flores, Mauricio A.; Menéndez-Proupin, Eduardo

    2016-05-01

    Non relativistic description of the chemical bonding for heavy atom systems is unrealistic. However, only few relativistic DFT calculations have been reported for gold clusters. In this work, we investigate the effect of the spin-orbit coupling in the structure, relative stability and HOMO-LUMO gap of the lowest-lying isomers of neutral Au13 clusters. Our results show that spin-orbit coupling increases the energy gap between 2D and 3D isomers and a relativistic bond contraction appears. Moreover, the relative energy of some isomers change when the spin-orbit coupling is included.

  19. Quantum tunneling of two coupled single-molecular magnets

    NASA Astrophysics Data System (ADS)

    Hu, Jianming; Chen, Zhide; Shen, Shunqing

    2003-03-01

    Jian-Ming Hu, Zhi-De Chen and Shun-Qing Shen Department of Physics, The University of Hong Kong Pokfulam Road, Hong Kong December 02, 2002 Very recently a supramolecular dimer of two single-molecule magnets (SMM) was reported to be synthesized successfully. Two single-molecule magnets are coupled antiferromagnetically to form a supramolecule dimer. We study the coupling effect and tunneling process by the numerical exact diagonalization method. The sweeping rate effect in the derivatives of hysteresis loops has been quantitatively investigated using the modified Landau-Zener model. In addiction we find that exchange coupling between the two SMMs provides a biased field to expel the tunneling between SMMs to two new resonant points via an intermediate state, and direct tunneling is prohibited. The model parameters are calculated for the dimer based on the tunneling process. The outcome indicates that the coupling effect will not change the parameters of each SMM too much at all. This work is supported by a CRCG grant of The University of Hong Kong.

  20. High electronic couplings of single mesitylene molecular junctions.

    PubMed

    Komoto, Yuki; Fujii, Shintaro; Nishino, Tomoaki; Kiguchi, Manabu

    2015-01-01

    We report on an experimental analysis of the charge transport properties of single mesitylene (1,3,5-trimethylbenzene) molecular junctions. The electronic conductance and the current-voltage characteristics of mesitylene molecules wired into Au electrodes were measured by a scanning tunnelling microscopy-based break-junction method at room temperature in a liquid environment. We found the molecular junctions exhibited two distinct conductance states with high conductance values of ca. 10(-1) G 0 and of more than 10(-3) G 0 (G 0 = 2e (2)/h) in the electronic conductance measurements. We further performed a statistical analysis of the current-voltage characteristics of the molecular junctions in the two states. Within a single channel resonant tunnelling model, we obtained electronic couplings in the molecular junctions by fitting the current-voltage characteristics to the single channel model. The origin of the high conductance was attributed to experimentally obtained large electronic couplings of the direct π-bonded molecular junctions (ca. 0.15 eV). Based on analysis of the stretch length of the molecular junctions and the large electronic couplings obtained from the I-V analysis, we proposed two structural models, in which (i) mesitylene binds to the Au electrode perpendicular to the charge transport direction and (ii) mesitylene has tilted from the perpendicular orientation. PMID:26732978

  1. High electronic couplings of single mesitylene molecular junctions

    PubMed Central

    Komoto, Yuki; Nishino, Tomoaki; Kiguchi, Manabu

    2015-01-01

    Summary We report on an experimental analysis of the charge transport properties of single mesitylene (1,3,5-trimethylbenzene) molecular junctions. The electronic conductance and the current–voltage characteristics of mesitylene molecules wired into Au electrodes were measured by a scanning tunnelling microscopy-based break-junction method at room temperature in a liquid environment. We found the molecular junctions exhibited two distinct conductance states with high conductance values of ca. 10−1 G 0 and of more than 10−3 G 0 (G 0 = 2e 2/h) in the electronic conductance measurements. We further performed a statistical analysis of the current–voltage characteristics of the molecular junctions in the two states. Within a single channel resonant tunnelling model, we obtained electronic couplings in the molecular junctions by fitting the current–voltage characteristics to the single channel model. The origin of the high conductance was attributed to experimentally obtained large electronic couplings of the direct π-bonded molecular junctions (ca. 0.15 eV). Based on analysis of the stretch length of the molecular junctions and the large electronic couplings obtained from the I–V analysis, we proposed two structural models, in which (i) mesitylene binds to the Au electrode perpendicular to the charge transport direction and (ii) mesitylene has tilted from the perpendicular orientation. PMID:26732978

  2. Local Correlation Calculations Using Standard and Renormalized Coupled-Cluster Methods

    NASA Astrophysics Data System (ADS)

    Li, Wei; Piecuch, Piotr; Gour, Jeffrey R.

    2009-03-01

    This article discusses our recent effort toward the extension of the linear scaling local correlation approach, termed 'cluster-in-molecule' and abbreviated as CIM [S. Li, J. Ma, and Y. Jiang, J. Comput. Chem. 23, 237 (2002); S. Li, J. Shen, W. Li, and Y. Jiang, J. Chem. Phys. 125, 074109 (2006)], to the coupled-cluster (CC) theory with singles and doubles (CCSD) and CC methods with singles, doubles, and non-iterative triples, including the standard CCSD(T) approach and the completely renormalized CR-CC(2,3) scheme [P. Piecuch and M. Włoch, J. Chem. Phys. 123, 224105 (2005); P. Piecuch, M. Włoch, J. R. Gour, and A. Kinal, Chem. Phys. Lett. 418, 467 (2006)]. As in the earlier CIM work that dealt with the second-order many-body perturbation theory and CC doubles approach, the main idea of the CIM-CCSD, CIM-CCSD(T), and CIM-CR-CC(2,3) methods is the realization of the fact that the total correlation energy of a large system can be obtained as a sum of contributions from the occupied orthonormal localized molecular orbitals and their respective occupied and unoccupied orbital domains. The CIM-CCSD, CIM-CCSD(T), and CIM-CR-CC(2,3) methods pursued in this work are characterized by high computational efficiency in both the CIM and CC parts, enabling calculations for much larger systems than previously possible. This is achieved by combining the natural linear scaling and embarrassing parallelism of the CIM ansatz with the vectorized CC codes that rely on recursively generated intermediates and fast matrix multiplication routines. By comparing the results of the canonical and CIM-CC calculations for normal alkanes and water clusters, it is demonstrated that the CIM-CCSD, CIM-CCSD(T), and CIM-CR-CC(2,3) approaches recover the corresponding canonical CC correlation energies to within 0.1% or so, while offering linear scaling of the computer costs with the system size and savings in the computer effort by orders of magnitude. By examining the dissociation of dodecane into C

  3. Coupled-cluster representation of Green function employing modified spectral resolutions of similarity transformed Hamiltonians

    SciTech Connect

    Kowalski, K.; Bhaskaran-Nair, K.; Shelton, W. A.

    2014-09-07

    In this paper we discuss a new formalism for producing an analytic coupled-cluster (CC) Green's function for an N-electron system by shifting the poles of similarity transformed Hamiltonians represented in N - 1 and N + 1 electron Hilbert spaces. Simple criteria are derived for the states in N - 1 and N + 1 electron spaces that are then corrected in the spectral resolution of the corresponding matrix representations of the similarity transformed Hamiltonian. The accurate description of excited state processes within a Green's function formalism would be of significant importance to a number of scientific communities ranging from physics and chemistry to engineering and the biological sciences. This is because the Green's function methodology provides a direct path for not only calculating properties whose underlying origins come from coupled many-body interactions but also provides a straightforward path for calculating electron transport, response, and correlation functions that allows for a direct link with experiment. Finally, as a special case of this general formulation, we discuss the application of this technique for Green's function defined by the CC with singles and doubles representation of the ground-state wave function.

  4. Coupled-cluster representation of Green function employing modified spectral resolutions of similarity transformed Hamiltonians

    SciTech Connect

    Kowalski, K. Bhaskaran-Nair, K.; Shelton, W. A.

    2014-09-07

    In this paper we discuss a new formalism for producing an analytic coupled-cluster (CC) Green's function for an N-electron system by shifting the poles of similarity transformed Hamiltonians represented in N − 1 and N + 1 electron Hilbert spaces. Simple criteria are derived for the states in N − 1 and N + 1 electron spaces that are then corrected in the spectral resolution of the corresponding matrix representations of the similarity transformed Hamiltonian. The accurate description of excited state processes within a Green's function formalism would be of significant importance to a number of scientific communities ranging from physics and chemistry to engineering and the biological sciences. This is because the Green's function methodology provides a direct path for not only calculating properties whose underlying origins come from coupled many-body interactions but also provides a straightforward path for calculating electron transport, response, and correlation functions that allows for a direct link with experiment. As a special case of this general formulation, we discuss the application of this technique for Green's function defined by the CC with singles and doubles representation of the ground-state wave function.

  5. Speeding up equation of motion coupled cluster theory with the chain of spheres approximation

    NASA Astrophysics Data System (ADS)

    Dutta, Achintya Kumar; Neese, Frank; Izsák, Róbert

    2016-01-01

    In the present paper, the chain of spheres exchange (COSX) approximation is applied to the highest scaling terms in the equation of motion (EOM) coupled cluster equations with single and double excitations, in particular, the terms involving integrals with four virtual labels. It is found that even the acceleration of this single term yields significant computational gains without compromising the desired accuracy of the method. For an excitation energy calculation on a cluster of five water molecules using 585 basis functions, the four virtual term is 9.4 times faster using COSX with a loose grid than using the canonical implementation, which yields a 2.6 fold acceleration for the whole of the EOM calculation. For electron attachment calculations, the four virtual term is 15 times and the total EOM calculation is 10 times faster than the canonical calculation for the same system. The accuracy of the new method was tested using Thiel's test set for excited states using the same settings and the maximum absolute deviation over the whole test set was found to be 12.945 cm-1 (59 μHartree) for excitation energies and 6.799 cm-1 (31 μHartree) for electron attachments. Using MP2 amplitudes for the ground state in combination with the parallel evaluation of the full EOM equations in the manner discussed in this paper enabled us to perform calculations for large systems. Electron affinity values for the two lowest states of a Zn protoporphyrine model compound (224 correlated electrons and 1120 basis functions) were obtained in 3 days 19 h using 4 cores of a Xeon E5-2670 processor allocating 10 GB memory per core. Calculating the lowest two excitation energies for trans-retinal (114 correlated electrons and 539 basis functions) took 1 day 21 h using eight cores of the same processor and identical memory allocation per core.

  6. Speeding up equation of motion coupled cluster theory with the chain of spheres approximation.

    PubMed

    Dutta, Achintya Kumar; Neese, Frank; Izsák, Róbert

    2016-01-21

    In the present paper, the chain of spheres exchange (COSX) approximation is applied to the highest scaling terms in the equation of motion (EOM) coupled cluster equations with single and double excitations, in particular, the terms involving integrals with four virtual labels. It is found that even the acceleration of this single term yields significant computational gains without compromising the desired accuracy of the method. For an excitation energy calculation on a cluster of five water molecules using 585 basis functions, the four virtual term is 9.4 times faster using COSX with a loose grid than using the canonical implementation, which yields a 2.6 fold acceleration for the whole of the EOM calculation. For electron attachment calculations, the four virtual term is 15 times and the total EOM calculation is 10 times faster than the canonical calculation for the same system. The accuracy of the new method was tested using Thiel's test set for excited states using the same settings and the maximum absolute deviation over the whole test set was found to be 12.945 cm(-1) (59 μHartree) for excitation energies and 6.799 cm(-1) (31 μHartree) for electron attachments. Using MP2 amplitudes for the ground state in combination with the parallel evaluation of the full EOM equations in the manner discussed in this paper enabled us to perform calculations for large systems. Electron affinity values for the two lowest states of a Zn protoporphyrine model compound (224 correlated electrons and 1120 basis functions) were obtained in 3 days 19 h using 4 cores of a Xeon E5-2670 processor allocating 10 GB memory per core. Calculating the lowest two excitation energies for trans-retinal (114 correlated electrons and 539 basis functions) took 1 day 21 h using eight cores of the same processor and identical memory allocation per core. PMID:26801015

  7. Parallelization of the Wolff single-cluster algorithm.

    PubMed

    Kaupuzs, J; Rimsāns, J; Melnik, R V N

    2010-02-01

    A parallel [open multiprocessing (OpenMP)] implementation of the Wolff single-cluster algorithm has been developed and tested for the three-dimensional (3D) Ising model. The developed procedure is generalizable to other lattice spin models and its effectiveness depends on the specific application at hand. The applicability of the developed methodology is discussed in the context of the applications, where a sophisticated shuffling scheme is used to generate pseudorandom numbers of high quality, and an iterative method is applied to find the critical temperature of the 3D Ising model with a great accuracy. For the lattice with linear size L=1024, we have reached the speedup about 1.79 times on two processors and about 2.67 times on four processors, as compared to the serial code. According to our estimation, the speedup about three times on four processors is reachable for the O(n) models with n> or =2. Furthermore, the application of the developed OpenMP code allows us to simulate larger lattices due to greater operative (shared) memory available. PMID:20365669

  8. Single Nucleotide Polymorphism Clustering in Systemic Autoimmune Diseases

    PubMed Central

    Charlon, Thomas; Bossini-Castillo, Lara; Carmona, F. David; Di Cara, Alessandro; Wojcik, Jérôme; Voloshynovskiy, Sviatoslav

    2016-01-01

    Systemic Autoimmune Diseases, a group of chronic inflammatory conditions, have variable symptoms and difficult diagnosis. In order to reclassify them based on genetic markers rather than clinical criteria, we performed clustering of Single Nucleotide Polymorphisms. However naive approaches tend to group patients primarily by their geographic origin. To reduce this “ancestry signal”, we developed SNPClust, a method to select large sources of ancestry-independent genetic variations from all variations detected by Principal Component Analysis. Applied to a Systemic Lupus Erythematosus case control dataset, SNPClust successfully reduced the ancestry signal. Results were compared with association studies between the cases and controls without or with reference population stratification correction methods. SNPClust amplified the disease discriminating signal and the ratio of significant associations outside the HLA locus was greater compared to population stratification correction methods. SNPClust will enable the use of ancestry-independent genetic information in the reclassification of Systemic Autoimmune Diseases. SNPClust is available as an R package and demonstrated on the public Human Genome Diversity Project dataset at https://github.com/ThomasChln/snpclust. PMID:27490238

  9. Single Nucleotide Polymorphism Clustering in Systemic Autoimmune Diseases.

    PubMed

    Charlon, Thomas; Martínez-Bueno, Manuel; Bossini-Castillo, Lara; Carmona, F David; Di Cara, Alessandro; Wojcik, Jérôme; Voloshynovskiy, Sviatoslav; Martín, Javier; Alarcón-Riquelme, Marta E

    2016-01-01

    Systemic Autoimmune Diseases, a group of chronic inflammatory conditions, have variable symptoms and difficult diagnosis. In order to reclassify them based on genetic markers rather than clinical criteria, we performed clustering of Single Nucleotide Polymorphisms. However naive approaches tend to group patients primarily by their geographic origin. To reduce this "ancestry signal", we developed SNPClust, a method to select large sources of ancestry-independent genetic variations from all variations detected by Principal Component Analysis. Applied to a Systemic Lupus Erythematosus case control dataset, SNPClust successfully reduced the ancestry signal. Results were compared with association studies between the cases and controls without or with reference population stratification correction methods. SNPClust amplified the disease discriminating signal and the ratio of significant associations outside the HLA locus was greater compared to population stratification correction methods. SNPClust will enable the use of ancestry-independent genetic information in the reclassification of Systemic Autoimmune Diseases. SNPClust is available as an R package and demonstrated on the public Human Genome Diversity Project dataset at https://github.com/ThomasChln/snpclust. PMID:27490238

  10. Tapered fiber coupling of single photons emitted by a deterministically positioned single nitrogen vacancy center

    SciTech Connect

    Liebermeister, Lars Petersen, Fabian; Münchow, Asmus v.; Burchardt, Daniel; Hermelbracht, Juliane; Tashima, Toshiyuki; Schell, Andreas W.; Benson, Oliver; Meinhardt, Thomas; Krueger, Anke; Stiebeiner, Ariane; Rauschenbeutel, Arno; Weinfurter, Harald; Weber, Markus

    2014-01-20

    A diamond nano-crystal hosting a single nitrogen vacancy (NV) center is optically selected with a confocal scanning microscope and positioned deterministically onto the subwavelength-diameter waist of a tapered optical fiber (TOF) with the help of an atomic force microscope. Based on this nano-manipulation technique, we experimentally demonstrate the evanescent coupling of single fluorescence photons emitted by a single NV-center to the guided mode of the TOF. By comparing photon count rates of the fiber-guided and the free-space modes and with the help of numerical finite-difference time domain simulations, we determine a lower and upper bound for the coupling efficiency of (9.5 ± 0.6)% and (10.4 ± 0.7)%, respectively. Our results are a promising starting point for future integration of single photon sources into photonic quantum networks and applications in quantum information science.

  11. Two- and four-component relativistic generalized-active-space coupled cluster method: implementation and application to BiH.

    PubMed

    Sørensen, Lasse K; Olsen, Jeppe; Fleig, Timo

    2011-06-01

    A string-based coupled-cluster method of general excitation rank and with optimal scaling which accounts for special relativity within the four-component framework is presented. The method opens the way for the treatment of multi-reference problems through an active-space inspired single-reference based state-selective expansion of the model space. The evaluation of the coupled-cluster vector function is implemented by considering contractions of elementary second-quantized operators without setting up the amplitude equations explicitly. The capabilities of the new method are demonstrated in application to the electronic ground state of the bismuth monohydride molecule. In these calculations simulated multi-reference expansions with both doubles and triples excitations into the external space as well as the regular coupled-cluster hierarchy up to full quadruples excitations are compared. The importance of atomic outer core-correlation for obtaining accurate results is shown. Comparison to the non-relativistic framework is performed throughout to illustrate the additional work of the transition to the four-component relativistic framework both in implementation and application. Furthermore, an evaluation of the highest order scaling for general-order expansions is presented. PMID:21663339

  12. Polynomial similarity transformation theory: A smooth interpolation between coupled cluster doubles and projected BCS applied to the reduced BCS Hamiltonian

    NASA Astrophysics Data System (ADS)

    Degroote, Matthias; Henderson, Thomas M.; Zhao, Jinmo; Dukelsky, Jorge; Scuseria, Gustavo E.

    2016-03-01

    We present a similarity transformation theory based on a polynomial form of a particle-hole pair excitation operator. In the weakly correlated limit, this polynomial becomes an exponential, leading to coupled cluster doubles. In the opposite strongly correlated limit, the polynomial becomes an extended Bessel expansion and yields the projected BCS wave function. In between, we interpolate using a single parameter. The effective Hamiltonian is non-Hermitian and this polynomial similarity transformation theory follows the philosophy of traditional coupled cluster, left projecting the transformed Hamiltonian onto subspaces of the Hilbert space in which the wave function variance is forced to be zero. Similarly, the interpolation parameter is obtained through minimizing the next residual in the projective hierarchy. We rationalize and demonstrate how and why coupled cluster doubles is ill suited to the strongly correlated limit, whereas the Bessel expansion remains well behaved. The model provides accurate wave functions with energy errors that in its best variant are smaller than 1% across all interaction strengths. The numerical cost is polynomial in system size and the theory can be straightforwardly applied to any realistic Hamiltonian.

  13. Tunable magnetoresistance in an asymmetrically coupled single-molecule junction.

    PubMed

    Warner, Ben; El Hallak, Fadi; Prüser, Henning; Sharp, John; Persson, Mats; Fisher, Andrew J; Hirjibehedin, Cyrus F

    2015-03-01

    Phenomena that are highly sensitive to magnetic fields can be exploited in sensors and non-volatile memories. The scaling of such phenomena down to the single-molecule level may enable novel spintronic devices. Here, we report magnetoresistance in a single-molecule junction arising from negative differential resistance that shifts in a magnetic field at a rate two orders of magnitude larger than Zeeman shifts. This sensitivity to the magnetic field produces two voltage-tunable forms of magnetoresistance, which can be selected via the applied bias. The negative differential resistance is caused by transient charging of an iron phthalocyanine (FePc) molecule on a single layer of copper nitride (Cu2N) on a Cu(001) surface, and occurs at voltages corresponding to the alignment of sharp resonances in the filled and empty molecular states with the Cu(001) Fermi energy. An asymmetric voltage-divider effect enhances the apparent voltage shift of the negative differential resistance with magnetic field, which inherently is on the scale of the Zeeman energy. These results illustrate the impact that asymmetric coupling to metallic electrodes can have on transport through molecules, and highlight how this coupling can be used to develop molecular spintronic applications. PMID:25622229

  14. Coupling single quantum dots to plasmonic nanocones: optical properties.

    PubMed

    Meixner, Alfred J; Jäger, Regina; Jäger, Sebastian; Bräuer, Annika; Scherzinger, Kerstin; Fulmes, Julia; Krockhaus, Sven zur Oven; Gollmer, Dominik A; Kern, Dieter P; Fleischer, Monika

    2015-01-01

    Coupling a single quantum emitter, such as a fluorescent molecule or a quantum dot (QD), to a plasmonic nanostructure is an important issue in nano-optics and nano-spectroscopy, relevant for a wide range of applications, including tip-enhanced near-field optical microscopy, plasmon enhanced molecular sensing and spectroscopy, and nanophotonic amplifiers or nanolasers, to mention only a few. While the field enhancement of a sharp nanoantenna increasing the excitation rate of a very closely positioned single molecule or QD has been well investigated, the detailed physical mechanisms involved in the emission of a photon from such a system are, by far, less investigated. In one of our ongoing research projects, we try to address these issues by constructing and spectroscopically analysing geometrically simple hybrid heterostructures consisting of sharp gold cones with single quantum dots attached to the very tip apex. An important goal of this work is to tune the longitudinal plasmon resonance by adjusting the cones' geometry to the emission maximum of the core-shell CdSe/ZnS QDs at nominally 650 nm. Luminescence spectra of the bare cones, pure QDs and hybrid systems were distinguished successfully. In the next steps we will further investigate, experimentally and theoretically, the optical properties of the coupled systems in more detail, such as the fluorescence spectra, blinking statistics, and the current results on the fluorescence lifetimes, and compare them with uncoupled QDs to obtain a clearer picture of the radiative and non-radiative processes. PMID:26404008

  15. Preparation of cluster states with endohedral fullerenes in single-walled carbon nanotubes

    NASA Astrophysics Data System (ADS)

    Hu, Y. M.; Chen, C. Y.; Yang, W. L.; Feng, M.

    2012-05-01

    We propose two scalable methods for generation of cluster states with arrays of endohedral fullerenes 15N@C60 residing in single-walled carbon nanotubes (SWCNTs) using direct and indirect methods, respectively. The direct method makes use of a series of controlled-phase flip (CPF) gates by electron spin resonance pulses of selective frequencies and durations, where the CPF gates are realized by magnetic-dipole couplings between the electron spins of the nearest-neighbour fullerenes in SWCNTs. The indirect method resorts to auxiliary mobile electron as the flying qubit, which transfers quantum information from one site to another. This greatly releases the requirements for the distance between fullerenes in SWCNTs. The decoherence effect and experimental feasibility are also discussed based on currently available technology.

  16. Laser to single-mode-fiber coupling: A laboratory guide

    NASA Technical Reports Server (NTRS)

    Ladany, I.

    1992-01-01

    All the information necessary to achieve reasonably efficient coupling of semiconductor lasers to single mode fibers is collected from the literature, reworked when necessary, and presented in a mostly tabular form. Formulas for determining the laser waist radius and the fiber mode radius are given. Imaging relations connecting these values with the object and image distances are given for three types of lenses: ball, hemisphere, and Gradient Index (GRIN). Sources for these lenses are indicated, and a brief discussion is given about ways of reducing feedback effects.

  17. Carrier doping and interlayer coupling in HTSC single crystals

    SciTech Connect

    Kishio, K.; Shimoyama, J.; Kimura, T.; Kotaka, Y.; Kitazawa, K.; Yamafuji, K.; Li, Q.; Suenaga, M.

    1994-09-01

    Experimental results of the effect of carrier doping on the irreversibility lines in (La,Sr){sub 2}CuO{sub 4{minus}{delta}} and Bi{sub 2}Sr{sub 2}CaCu{sub 2}O{sub 8 + {delta}} single crystals are summarized. As a function of Sr or oxygen contents, systematic and dramatic widening of the irreversible regions in the B {minus} T phase diagram was observed in both systems. The present study suggests the critical importance of carrier concentration which directly affects the interlayer coupling strength and dimensionality of the flux line lattice in all the layered HTSC compounds as a universal feature.

  18. Near-Edge X-ray Absorption Fine Structure within Multilevel Coupled Cluster Theory.

    PubMed

    Myhre, Rolf H; Coriani, Sonia; Koch, Henrik

    2016-06-14

    Core excited states are challenging to calculate, mainly because they are embedded in a manifold of high-energy valence-excited states. However, their locality makes their determination ideal for local correlation methods. In this paper, we demonstrate the performance of multilevel coupled cluster theory in computing core spectra both within the core-valence separated and the asymmetric Lanczos implementations of coupled cluster linear response theory. We also propose a visualization tool to analyze the excitations using the difference between the ground-state and excited-state electron densities. PMID:27182829

  19. Current rectification in a single molecule diode: the role of electrode coupling

    NASA Astrophysics Data System (ADS)

    Sherif, Siya; Rubio-Bollinger, Gabino; Pinilla-Cienfuegos, Elena; Coronado, Eugenio; Cuevas, Juan Carlos; Agraït, Nicolás

    2015-07-01

    We demonstrate large rectification ratios (\\gt 100) in single-molecule junctions based on a metal-oxide cluster (polyoxometalate), using a scanning tunneling microscope (STM) both at ambient conditions and at low temperature. These rectification ratios are the largest ever observed in a single-molecule junction, and in addition these junctions sustain current densities larger than 105 A cm-2. By following the variation of the I-V characteristics with tip-molecule separation we demonstrate unambiguously that rectification is due to asymmetric coupling to the electrodes of a molecule with an asymmetric level structure. This mechanism can be implemented in other type of molecular junctions using both organic and inorganic molecules and provides a simple strategy for the rational design of molecular diodes.

  20. Current rectification in a single molecule diode: the role of electrode coupling.

    PubMed

    Sherif, Siya; Rubio-Bollinger, Gabino; Pinilla-Cienfuegos, Elena; Coronado, Eugenio; Cuevas, Juan Carlos; Agraït, Nicolás

    2015-07-24

    We demonstrate large rectification ratios (> 100) in single-molecule junctions based on a metal-oxide cluster (polyoxometalate), using a scanning tunneling microscope (STM) both at ambient conditions and at low temperature. These rectification ratios are the largest ever observed in a single-molecule junction, and in addition these junctions sustain current densities larger than 10(5) A cm(-2). By following the variation of the I-V characteristics with tip-molecule separation we demonstrate unambiguously that rectification is due to asymmetric coupling to the electrodes of a molecule with an asymmetric level structure. This mechanism can be implemented in other type of molecular junctions using both organic and inorganic molecules and provides a simple strategy for the rational design of molecular diodes. PMID:26133791

  1. Single charge detection in capacitively coupled integrated single electron transistors based on single-walled carbon nanotubes

    NASA Astrophysics Data System (ADS)

    Zhou, Xin; Ishibashi, Koji

    2012-09-01

    Single charge detection is demonstrated in the capacitively coupled integrated single electron transistors (SETs) in single-walled carbon nanotubes (SWCNTs) quantum dots. Two SETs are fabricated based on two different SWCNTs aligned in parallel, by taking advantage of the aligned growth of SWCNTs and subsequent transfer-printed techniques. In order to make both two SETs be capacitively coupled, a metal finger is fabricated on the top of them. The charge sensing is proved by the response of a detector current in one SWCNT-SET when the number of electrons in the other SWCNT-SET is changed by sweeping the corresponding gate voltages. In this integrated device, shifts of Coulomb oscillation peaks due to the single electron event are also observed.

  2. Analytic gradients for coupled-cluster energies that include noniterative connected triple excitations - Application to cis- and trans-HONO

    NASA Technical Reports Server (NTRS)

    Lee, Timothy J.; Rendell, Alistair P.

    1991-01-01

    An efficient formulation of the analytic energy gradient for the single and double excitation coupled-cluster method that includes a perturbational estimate of the effects of connected triple excitations is presented. The formulation has a small computational cost, and the algebraic manipulations may be applied generally to the analytic gradient of Moller-Plesset perturbation theory energies. The new formulation has been implemented in an efficient set of programs that utilize highly vectorized algorithms and has been used to investigate the equilibrium structures, harmonic vibrational frequencies, IR intensities, and energy separation of cis- and trans-HONO.

  3. Relativistic coupled-cluster calculations of parity nonconservation in Ba{sup +} by the sum-over-states approach

    SciTech Connect

    Gopakumar, Geetha; Das, Bhanu Pratap; Chaudhuri, R. K.; Mukherjee, D.; Hirao, K.

    2007-01-07

    The authors present the results of their calculation for the parity nonconserving 5p{sup 6}6s{sub 1/2}{yields}5p{sup 6}5d{sub 3/2} transition in Ba{sup +} using the relativistic coupled-cluster theory in the singles, doubles, and partial triples approximation. The contributions from the leading intermediate states are explicitly considered. It is found that the largest contribution comes from the |5p{sup 6}6p{sub 1/2}> state. Their results are in reasonable agreement with other calculations.

  4. Hybrid Coupled Cluster and Molecular Dynamics Approach: Application to the Excitation Spectrum of Cytosine in the Native DNA Environment

    SciTech Connect

    Valiev, Marat; Kowalski, Karol

    2006-12-07

    Evolution of the excited state energies of cytosine base in the native DNA environment was investigated using hybrid coupled cluster and classical molecular dynamics approach. The time averaged excitation energies obtained with the variant of the completely renormalized equation-of-motion with singles, doubles, and non-iterative triples approach that includes a bulk of the correlation effects for excited states, are compared with the analogous calculations in the gas phase. Significant blue shifts for the two lowest singlet excitation energies can be observed as a result of interaction of the quantum system with surrounding environment.

  5. The excited states of K3 cluster: The molecular symmetry adapted non-adiabatic coupling terms and diabatic Hamiltonian matrix

    NASA Astrophysics Data System (ADS)

    Mukherjee, Saikat; Adhikari, Satrajit

    2014-08-01

    We calculate the adiabatic potential energy surfaces (PESs) and the non-adiabatic coupling terms (NACTs) for the excited electronic states of K3 cluster by MRCI approach using MOLPRO. The NACTs are adapted with molecular symmetry to assign appropriate IREPs so that the elements of the Hamiltonian matrix are totally symmetric. We incorporate those NACTs into three-state adiabatic-to-diabatic transformation (ADT) equations to obtain ADT angles for constructing continuous, single-valued, smooth and symmetric diabatic Hamiltonian matrix, where its elements are fitted with analytic functions. Finally, we demonstrate that the dressed diabatic and adiabatic-via-dressed diabatic PECs show prominent topological effect over dressed adiabatic curves.

  6. Vibronic coupling in molecular crystals: A Franck-Condon Herzberg-Teller model of H-aggregate fluorescence based on quantum chemical cluster calculations.

    PubMed

    Wykes, M; Parambil, R; Beljonne, D; Gierschner, J

    2015-09-21

    Here, we present a general approach to treating vibronic coupling in molecular crystals based on atomistic simulations of large clusters. Such clusters comprise model aggregates treated at the quantum chemical level embedded within a realistic environment treated at the molecular mechanics level. As we calculate ground and excited state equilibrium geometries and vibrational modes of model aggregates, our approach is able to capture effects arising from coupling to intermolecular degrees of freedom, absent from existing models relying on geometries and normal modes of single molecules. Using the geometries and vibrational modes of clusters, we are able to simulate the fluorescence spectra of aggregates for which the lowest excited state bears negligible oscillator strength (as is the case, e.g., ideal H-aggregates) by including both Franck-Condon (FC) and Herzberg-Teller (HT) vibronic transitions. The latter terms allow the adiabatic excited state of the cluster to couple with vibrations in a perturbative fashion via derivatives of the transition dipole moment along nuclear coordinates. While vibronic coupling simulations employing FC and HT terms are well established for single-molecules, to our knowledge this is the first time they are applied to molecular aggregates. Here, we apply this approach to the simulation of the low-temperature fluorescence spectrum of para-distyrylbenzene single-crystal H-aggregates and draw comparisons with coarse-grained Frenkel-Holstein approaches previously extensively applied to such systems. PMID:26395696

  7. Vibronic coupling in molecular crystals: A Franck-Condon Herzberg-Teller model of H-aggregate fluorescence based on quantum chemical cluster calculations

    NASA Astrophysics Data System (ADS)

    Wykes, M.; Parambil, R.; Beljonne, D.; Gierschner, J.

    2015-09-01

    Here, we present a general approach to treating vibronic coupling in molecular crystals based on atomistic simulations of large clusters. Such clusters comprise model aggregates treated at the quantum chemical level embedded within a realistic environment treated at the molecular mechanics level. As we calculate ground and excited state equilibrium geometries and vibrational modes of model aggregates, our approach is able to capture effects arising from coupling to intermolecular degrees of freedom, absent from existing models relying on geometries and normal modes of single molecules. Using the geometries and vibrational modes of clusters, we are able to simulate the fluorescence spectra of aggregates for which the lowest excited state bears negligible oscillator strength (as is the case, e.g., ideal H-aggregates) by including both Franck-Condon (FC) and Herzberg-Teller (HT) vibronic transitions. The latter terms allow the adiabatic excited state of the cluster to couple with vibrations in a perturbative fashion via derivatives of the transition dipole moment along nuclear coordinates. While vibronic coupling simulations employing FC and HT terms are well established for single-molecules, to our knowledge this is the first time they are applied to molecular aggregates. Here, we apply this approach to the simulation of the low-temperature fluorescence spectrum of para-distyrylbenzene single-crystal H-aggregates and draw comparisons with coarse-grained Frenkel-Holstein approaches previously extensively applied to such systems.

  8. Vibronic coupling in molecular crystals: A Franck-Condon Herzberg-Teller model of H-aggregate fluorescence based on quantum chemical cluster calculations

    SciTech Connect

    Wykes, M. Parambil, R.; Gierschner, J.; Beljonne, D.

    2015-09-21

    Here, we present a general approach to treating vibronic coupling in molecular crystals based on atomistic simulations of large clusters. Such clusters comprise model aggregates treated at the quantum chemical level embedded within a realistic environment treated at the molecular mechanics level. As we calculate ground and excited state equilibrium geometries and vibrational modes of model aggregates, our approach is able to capture effects arising from coupling to intermolecular degrees of freedom, absent from existing models relying on geometries and normal modes of single molecules. Using the geometries and vibrational modes of clusters, we are able to simulate the fluorescence spectra of aggregates for which the lowest excited state bears negligible oscillator strength (as is the case, e.g., ideal H-aggregates) by including both Franck-Condon (FC) and Herzberg-Teller (HT) vibronic transitions. The latter terms allow the adiabatic excited state of the cluster to couple with vibrations in a perturbative fashion via derivatives of the transition dipole moment along nuclear coordinates. While vibronic coupling simulations employing FC and HT terms are well established for single-molecules, to our knowledge this is the first time they are applied to molecular aggregates. Here, we apply this approach to the simulation of the low-temperature fluorescence spectrum of para-distyrylbenzene single-crystal H-aggregates and draw comparisons with coarse-grained Frenkel-Holstein approaches previously extensively applied to such systems.

  9. Is near-``spectroscopic accuracy'' possible for heavy atoms and coupled cluster theory? An investigation of the first ionization potentials of the atoms Ga-Kr

    NASA Astrophysics Data System (ADS)

    DeYonker, Nathan J.; Peterson, Kirk A.

    2013-04-01

    Recent developments in ab initio coupled cluster (CC) theory and correlation consistent basis sets have ushered in an era of unprecedented accuracy when studying the spectroscopy and thermodynamics of molecules containing main group elements. These same developments have recently seen application to heavier inorganic or transition metal-containing species. The present work benchmarks conventional single reference coupled cluster theory (up to full configuration interaction for valence electron correlation and coupled cluster with up to full pentuple excitations (CCSDTQP) for core-valence correlation) and explicitly correlated coupled cluster methods [CC with single, double, and perturbative triple substitutions (CCSD(T)-F12)] for the atomic ionization potentials of the six 4p elements (Ga-Kr), a property with experimental error bars no greater than a few cm-1. When second-order spin orbit coupling effects are included, a composite methodology based on CCSD(T) calculations yielded a mean signed error of just -0.039 kcal mol-1 and a mean unsigned error of 0.043 kcal mol-1. Inclusion of post-CCSD(T) correlation corrections reduced both of these values to -0.008 kcal mol-1 and 0.025 kcal mol-1, respectively, with the latter corresponding to an average error of just 9 cm-1. The maximum signed error in the latter scheme was just -0.043 kcal mol-1 (15 cm-1).

  10. Three coupled qubits in a single superconducting quantum circuit

    NASA Astrophysics Data System (ADS)

    Chand, Madhavi; Kundu, Suman; Nehra, N.; Raj, Cosmic; Roy, Tanay; Ranadive, A.; Patankar, Meghan P.; Vijay, R.

    We propose a new design for a 3-qubit system in the 3D circuit QED architecture. Our design exploits the geometrical symmetry of a single superconducting circuit with three degrees of freedom to generate three coupled qubits. However, only one of these is strongly coupled to the environment while the other two are protected from the Purcell effect. Nevertheless, all three qubits can be measured using the standard dispersive technique. We will present preliminary data on this circuit showing evidence of three distinct qubits that retain the essential properties of a 3D transmon, namely insensitivity to charge noise, sufficient anharmonicity and good coherence times. We will also characterize the coupling of the three qubits to each other, to the environment and to a neighboring transmon qubit. Finally, we will compare our design to previous multi-qubit circuits and discuss possible applications in quantum computing and quantum simulations. Funding: Department of Atomic Energy, Govt. of India; Department of Science and Technology, Govt. of India.

  11. Is It Possible To Obtain Coupled Cluster Quality Energies at near Density Functional Theory Cost? Domain-Based Local Pair Natural Orbital Coupled Cluster vs Modern Density Functional Theory.

    PubMed

    Liakos, Dimitrios G; Neese, Frank

    2015-09-01

    The recently developed domain-based local pair natural orbital coupled cluster theory with single, double, and perturbative triple excitations (DLPNO-CCSD(T)) delivers results that are closely approaching those of the parent canonical coupled cluster method at a small fraction of the computational cost. A recent extended benchmark study established that, depending on the three main truncation thresholds, it is possible to approach the canonical CCSD(T) results within 1 kJ (default setting, TightPNO), 1 kcal/mol (default setting, NormalPNO), and 2-3 kcal (default setting, LoosePNO). Although thresholds for calculations with TightPNO are 2-4 times slower than those based on NormalPNO thresholds, they are still many orders of magnitude faster than canonical CCSD(T) calculations, even for small and medium sized molecules where there is little locality. The computational effort for the coupled cluster step scales nearly linearly with system size. Since, in many instances, the coupled cluster step in DLPNO-CCSD(T) is cheaper or at least not much more expensive than the preceding Hartree-Fock calculation, it is useful to compare the method against modern density functional theory (DFT), which requires an effort comparable to that of Hartree-Fock theory (at least if Hartree-Fock exchange is part of the functional definition). Double hybrid density functionals (DHDF's) even require a MP2-like step. The purpose of this article is to evaluate the cost vs accuracy ratio of DLPNO-CCSD(T) against modern DFT (including the PBE, B3LYP, M06-2X, B2PLYP, and B2GP-PLYP functionals and, where applicable, their van der Waals corrected counterparts). To eliminate any possible bias in favor of DLPNO-CCSD(T), we have chosen established benchmark sets that were specifically proposed for evaluating DFT functionals. It is demonstrated that DLPNO-CCSD(T) with any of the three default thresholds is more accurate than any of the DFT functionals. Furthermore, using the aug-cc-pVTZ basis set and

  12. An efficient and near linear scaling pair natural orbital based local coupled cluster method

    NASA Astrophysics Data System (ADS)

    Riplinger, Christoph; Neese, Frank

    2013-01-01

    In previous publications, it was shown that an efficient local coupled cluster method with single- and double excitations can be based on the concept of pair natural orbitals (PNOs) [F. Neese, A. Hansen, and D. G. Liakos, J. Chem. Phys. 131, 064103 (2009), 10.1063/1.3173827]. The resulting local pair natural orbital-coupled-cluster single double (LPNO-CCSD) method has since been proven to be highly reliable and efficient. For large molecules, the number of amplitudes to be determined is reduced by a factor of 105-106 relative to a canonical CCSD calculation on the same system with the same basis set. In the original method, the PNOs were expanded in the set of canonical virtual orbitals and single excitations were not truncated. This led to a number of fifth order scaling steps that eventually rendered the method computationally expensive for large molecules (e.g., >100 atoms). In the present work, these limitations are overcome by a complete redesign of the LPNO-CCSD method. The new method is based on the combination of the concepts of PNOs and projected atomic orbitals (PAOs). Thus, each PNO is expanded in a set of PAOs that in turn belong to a given electron pair specific domain. In this way, it is possible to fully exploit locality while maintaining the extremely high compactness of the original LPNO-CCSD wavefunction. No terms are dropped from the CCSD equations and domains are chosen conservatively. The correlation energy loss due to the domains remains below <0.05%, which implies typically 15-20 but occasionally up to 30 atoms per domain on average. The new method has been given the acronym DLPNO-CCSD ("domain based LPNO-CCSD"). The method is nearly linear scaling with respect to system size. The original LPNO-CCSD method had three adjustable truncation thresholds that were chosen conservatively and do not need to be changed for actual applications. In the present treatment, no additional truncation parameters have been introduced. Any additional truncation

  13. Entangled states decoherence in coupled molecular spin clusters

    NASA Astrophysics Data System (ADS)

    Troiani, Filippo; Szallas, Attila; Bellini, Valerio; Affronte, Marco

    2010-03-01

    Localized electron spins in solid-state systems are widely investigated as potential building blocks of quantum devices and computers. While most efforts in the field have been focused on semiconductor low-dimensional structures, molecular antiferromagnets were recently recognized as alternative implementations of effective few-level spin systems. Heterometallic, Cr-based spin rings behave as effective spin-1/2 systems at low temperature and show long decoherence times [1]; besides, they can be chemically linked and magnetically coupled in a controllable fascion [2]. Here, we theoretically investigate the decoherence of the Bell states in such ring dimers, resulting from hyperfine interactions with nuclear spins. Based on a microscopic description of the molecules [3], we simulate the effect of inhomogeneous broadening, spectral diffusion and electron-nuclear entanglement on the electron-spin coherence, estimating the role of the different nuclei (and of possible chemical substitutions), as well as the effect of simple spin-echo sequences. References: [1] F. Troiani, et al., Phys. Rev. Lett. 94, 207208 (2005). [2] G. A. Timco, S: Carretta, F. Troiani et al., Nature Nanotech. 4, 173 (2009). [3] F. Troiani, V. Bellini, and M. Affronte, Phys. Rev. B 77, 054428 (2008).

  14. Assessment of the accuracy of coupled cluster perturbation theory for open-shell systems. I. Triples expansions.

    PubMed

    Eriksen, Janus J; Matthews, Devin A; Jørgensen, Poul; Gauss, Jürgen

    2016-05-21

    The accuracy at which total energies of open-shell atoms and organic radicals may be calculated is assessed for selected coupled cluster perturbative triples expansions, all of which augment the coupled cluster singles and doubles (CCSD) energy by a non-iterative correction for the effect of triple excitations. Namely, the second- through sixth-order models of the recently proposed CCSD(T-n) triples series [J. J. Eriksen et al., J. Chem. Phys. 140, 064108 (2014)] are compared to the acclaimed CCSD(T) model for both unrestricted as well as restricted open-shell Hartree-Fock (UHF/ROHF) reference determinants. By comparing UHF- and ROHF-based statistical results for a test set of 18 modest-sized open-shell species with comparable RHF-based results, no behavioral differences are observed for the higher-order models of the CCSD(T-n) series in their correlated descriptions of closed- and open-shell species. In particular, we find that the convergence rate throughout the series towards the coupled cluster singles, doubles, and triples (CCSDT) solution is identical for the two cases. For the CCSD(T) model, on the other hand, not only its numerical consistency, but also its established, yet fortuitous cancellation of errors breaks down in the transition from closed- to open-shell systems. The higher-order CCSD(T-n) models (orders n > 3) thus offer a consistent and significant improvement in accuracy relative to CCSDT over the CCSD(T) model, equally for RHF, UHF, and ROHF reference determinants, albeit at an increased computational cost. PMID:27208931

  15. Assessment of the accuracy of coupled cluster perturbation theory for open-shell systems. I. Triples expansions

    NASA Astrophysics Data System (ADS)

    Eriksen, Janus J.; Matthews, Devin A.; Jørgensen, Poul; Gauss, Jürgen

    2016-05-01

    The accuracy at which total energies of open-shell atoms and organic radicals may be calculated is assessed for selected coupled cluster perturbative triples expansions, all of which augment the coupled cluster singles and doubles (CCSD) energy by a non-iterative correction for the effect of triple excitations. Namely, the second- through sixth-order models of the recently proposed CCSD(T-n) triples series [J. J. Eriksen et al., J. Chem. Phys. 140, 064108 (2014)] are compared to the acclaimed CCSD(T) model for both unrestricted as well as restricted open-shell Hartree-Fock (UHF/ROHF) reference determinants. By comparing UHF- and ROHF-based statistical results for a test set of 18 modest-sized open-shell species with comparable RHF-based results, no behavioral differences are observed for the higher-order models of the CCSD(T-n) series in their correlated descriptions of closed- and open-shell species. In particular, we find that the convergence rate throughout the series towards the coupled cluster singles, doubles, and triples (CCSDT) solution is identical for the two cases. For the CCSD(T) model, on the other hand, not only its numerical consistency, but also its established, yet fortuitous cancellation of errors breaks down in the transition from closed- to open-shell systems. The higher-order CCSD(T-n) models (orders n > 3) thus offer a consistent and significant improvement in accuracy relative to CCSDT over the CCSD(T) model, equally for RHF, UHF, and ROHF reference determinants, albeit at an increased computational cost.

  16. Gradients for the partitioned equation-of-motion coupled-cluster method

    SciTech Connect

    Gwaltney, S.R.; Bartlett, R.J.

    1996-12-31

    The Equation-of-Motion Coupled-Cluster method restricted to singles and doubles (EOM-CCSD) is a highly accurate method for calculating excited states of molecules. Errors of 0.1 to 0.3 eV are typical for excitation energies. But a major drawback is that EOM-CCSD is an iterative n{sup 6} method, and for large cases the cost can be prohibitive. For a partitioned EOM-CCSD calculation, the doubles-doubles block of the H matrix is replaced with Ho. Combined with truncating the H matrix at second order (i.e. basing the excited state calculation on a MBPT(2) ground state), the partitioning technique creates an iterative n{sup 5} method for excited states, the P-EOM-MBPT(2) method. In this poster we will present the theory and examples of P-EOM-MBPT(2) gradient calculations. The gradients provide an inexpensive way to look at potential energy surfaces of excited states of molecules.

  17. A universal state-selective approach to multireference coupled-cluster non-iterative corrections

    SciTech Connect

    Kowalski, Karol

    2011-05-21

    A new form of the asymmetric energy functional for the multireference coupled cluster (MRCC) theories is discussed from the point of view of an energy expansion in quasidegenerate situation. The resulting expansion for the exact electronic energy can be used to define the non-iterative corrections to approximate MRCC approaches. In particular, we show that in the proposed framework the essential part of dynamic correlation can be encapsulated in the so-called correlation Hamiltonian, which in analogy to the effective Hamiltonian, is defined in the model space (M0). When the trail wavefunction (wavefunctions) is determined without invoking a specific form of the MRCC sufficiency conditions, the ensuing correction can be universally applied to any type of the approximate MRCC method employing the same excitation manifold. We also discuss several strategies of normalizing trial wavefunctions, which significantly simplify the algebraic structure of the correction. The analogies with other MRCC triples corrections to MRCC theories with singles and doubles are outlined. Possible parallel algorithms for the non-iterative corrections are alsodiscussed.

  18. Perturbative treatment of triple excitations in internally contracted multireference coupled cluster theory

    NASA Astrophysics Data System (ADS)

    Hanauer, Matthias; Köhn, Andreas

    2012-05-01

    Internally contracted multireference coupled cluster (ic-MRCC) methods with perturbative treatment of triple excitations are formulated based on Dyall's definition of a zeroth-order Hamiltonian. The iterative models ic-MRCCSDT-1, ic-MRCC3, and their variants ic-MRCCSD(T), ic-MRCC(3) which determine the energy correction from triples by a non-iterative step are consistent in the single-reference limit with CCSDT-1a, CC3, CCSD(T), and CC(3), respectively. Numerical tests on the potential energy surfaces of BeH2, H2O, and N2 as well as on the structure and harmonic vibrational frequencies of the ozone molecule show that these methods account very well for higher order correlation effects. The ic-MRCCSD(T) method is further applied to the geometry optimization and harmonic frequencies of the symmetric vibrational modes of the binuclear transition metal oxide Ni2O2, to the singlet-triplet splittings of o-, m-, and p-benzyne and to a ring-opening reaction of an azirine compound with the molecular formula C6H7NO. The size of the active spaces used in this study ranges from CAS(2,2) to CAS(8,8). Comparisons of results based on differently sized active spaces indicate that the ic-MRCCSD(T) method provides a highly accurate and efficient treatment of both static and dynamic electron correlation in connection with minimal active spaces.

  19. Perturbative approximation to hybrid equation of motion coupled cluster/effective fragment potential method

    SciTech Connect

    Ghosh, Debashree

    2014-03-07

    Hybrid quantum mechanics/molecular mechanics (QM/MM) methods provide an attractive way to closely retain the accuracy of the QM method with the favorable computational scaling of the MM method. Therefore, it is not surprising that QM/MM methods are being increasingly used for large chemical/biological systems. Hybrid equation of motion coupled cluster singles doubles/effective fragment potential (EOM-CCSD/EFP) methods have been developed over the last few years to understand the effect of solvents and other condensed phases on the electronic spectra of chromophores. However, the computational cost of this approach is still dominated by the steep scaling of the EOM-CCSD method. In this work, we propose and implement perturbative approximations to the EOM-CCSD method in this hybrid scheme to reduce the cost of EOM-CCSD/EFP. The timings and accuracy of this hybrid approach is tested for calculation of ionization energies, excitation energies, and electron affinities of microsolvated nucleic acid bases (thymine and cytosine), phenol, and phenolate.

  20. Multireference linearized coupled cluster theory for strongly correlated systems using matrix product states.

    PubMed

    Sharma, Sandeep; Alavi, Ali

    2015-09-14

    We propose a multireference linearized coupled cluster theory using matrix product states (MPSs-LCC) which provides remarkably accurate ground-state energies, at a computational cost that has the same scaling as multireference configuration interaction singles and doubles, for a wide variety of electronic Hamiltonians. These range from first-row dimers at equilibrium and stretched geometries to highly multireference systems such as the chromium dimer and lattice models such as periodic two-dimensional 1-band and 3-band Hubbard models. The MPS-LCC theory shows a speed up of several orders of magnitude over the usual Density Matrix Renormalization Group (DMRG) algorithm while delivering energies in excellent agreement with converged DMRG calculations. Also, in all the benchmark calculations presented here, MPS-LCC outperformed the commonly used multi-reference quantum chemistry methods in some cases giving energies in excess of an order of magnitude more accurate. As a size-extensive method that can treat large active spaces, MPS-LCC opens up the use of multireference quantum chemical techniques in strongly correlated ab initio Hamiltonians, including two- and three-dimensional solids. PMID:26374008

  1. Parallel implementation of multireference coupled-cluster theories based on the reference-level parallelism

    SciTech Connect

    Brabec, Jiri; Pittner, Jiri; van Dam, Hubertus JJ; Apra, Edoardo; Kowalski, Karol

    2012-02-01

    A novel algorithm for implementing general type of multireference coupled-cluster (MRCC) theory based on the Jeziorski-Monkhorst exponential Ansatz [B. Jeziorski, H.J. Monkhorst, Phys. Rev. A 24, 1668 (1981)] is introduced. The proposed algorithm utilizes processor groups to calculate the equations for the MRCC amplitudes. In the basic formulation each processor group constructs the equations related to a specific subset of references. By flexible choice of processor groups and subset of reference-specific sufficiency conditions designated to a given group one can assure optimum utilization of available computing resources. The performance of this algorithm is illustrated on the examples of the Brillouin-Wigner and Mukherjee MRCC methods with singles and doubles (BW-MRCCSD and Mk-MRCCSD). A significant improvement in scalability and in reduction of time to solution is reported with respect to recently reported parallel implementation of the BW-MRCCSD formalism [J.Brabec, H.J.J. van Dam, K. Kowalski, J. Pittner, Chem. Phys. Lett. 514, 347 (2011)].

  2. Multireference linearized coupled cluster theory for strongly correlated systems using matrix product states

    SciTech Connect

    Sharma, Sandeep; Alavi, Ali

    2015-09-14

    We propose a multireference linearized coupled cluster theory using matrix product states (MPSs-LCC) which provides remarkably accurate ground-state energies, at a computational cost that has the same scaling as multireference configuration interaction singles and doubles, for a wide variety of electronic Hamiltonians. These range from first-row dimers at equilibrium and stretched geometries to highly multireference systems such as the chromium dimer and lattice models such as periodic two-dimensional 1-band and 3-band Hubbard models. The MPS-LCC theory shows a speed up of several orders of magnitude over the usual Density Matrix Renormalization Group (DMRG) algorithm while delivering energies in excellent agreement with converged DMRG calculations. Also, in all the benchmark calculations presented here, MPS-LCC outperformed the commonly used multi-reference quantum chemistry methods in some cases giving energies in excess of an order of magnitude more accurate. As a size-extensive method that can treat large active spaces, MPS-LCC opens up the use of multireference quantum chemical techniques in strongly correlated ab initio Hamiltonians, including two- and three-dimensional solids.

  3. Iterative universal state selective correction for the Brillouin-Wigner multireference coupled-cluster theory.

    PubMed

    Banik, Subrata; Ravichandran, Lalitha; Brabec, Jiří; Hubač, Ivan; Kowalski, Karol; Pittner, Jiří

    2015-03-21

    As a further development of the previously introduced a posteriori Universal State-Selective (USS) corrections [K. Kowalski, J. Chem. Phys. 134, 194107 (2011); J. Brabec et al., ibid. 136, 124102 (2012)], we suggest an iterative form of the USS correction by means of correcting effective Hamiltonian matrix elements. We also formulate USS corrections via the left Bloch equations. The convergence of the USS corrections with excitation level towards the full configuration interaction (FCI) limit is also investigated. Various forms of the USS and simplified diagonal USS corrections at the singles and doubles and perturbative triple levels are numerically assessed on several model systems and on the ozone and tetramethyleneethane molecules. It is shown that the iterative USS correction can successfully replace the previously developed a posteriori Brillouin-Wigner coupled cluster size-extensivity correction, while it is not sensitive to intruder states and performs well also in other cases when the a posteriori one fails, like, e.g., for the asymmetric vibration mode of ozone. PMID:25796230

  4. Perturbative approximation to hybrid equation of motion coupled cluster/effective fragment potential method.

    PubMed

    Ghosh, Debashree

    2014-03-01

    Hybrid quantum mechanics/molecular mechanics (QM/MM) methods provide an attractive way to closely retain the accuracy of the QM method with the favorable computational scaling of the MM method. Therefore, it is not surprising that QM/MM methods are being increasingly used for large chemical/biological systems. Hybrid equation of motion coupled cluster singles doubles/effective fragment potential (EOM-CCSD/EFP) methods have been developed over the last few years to understand the effect of solvents and other condensed phases on the electronic spectra of chromophores. However, the computational cost of this approach is still dominated by the steep scaling of the EOM-CCSD method. In this work, we propose and implement perturbative approximations to the EOM-CCSD method in this hybrid scheme to reduce the cost of EOM-CCSD/EFP. The timings and accuracy of this hybrid approach is tested for calculation of ionization energies, excitation energies, and electron affinities of microsolvated nucleic acid bases (thymine and cytosine), phenol, and phenolate. PMID:24606347

  5. Symmetry breaking in O4(+): An application of the Brueckner coupled-cluster method

    NASA Technical Reports Server (NTRS)

    Barnes, Leslie A.; Lindh, Roland

    1994-01-01

    A recent calculation of the antisymmetric stretch frequency for the rectangular structure of quartet O4(+) using the singles and doubles quadratic configuration interaction method with a perturbational estimate of connected triple excitations (QCISD(T)) method gave a value of 3710 cm(exp -1). This anomalous frequency is shown to be a consequence of symmetry breaking effects, which occur even though the QCISD(T) solution derived from a delocalized SCF reference function lies energetically well below the two localized (symmetry-broken) solutions at the equilibrium geometry. The symmetry breaking is almost eliminated at the CCSD level of theory, but the small remaining symmetry breaking effects are magnified at the CCSD(T) level of theory so that the antisymmetric stretch frequency is still significantly in error. The use of the Brueckner coupled cluster method, however, leads to a symmetrical solution which is free of symmetry breaking effects, with an antisymmetric stretch frequency of 1322 cm(exp -1), in good agreement with our earlier calculations using the complete active space self consistent field/complete active space state interaction (CASSCF/CASSI) method.

  6. Origin-independent two-photon circular dichroism calculations in coupled cluster theory.

    PubMed

    Friese, Daniel H; Hättig, Christof; Rizzo, Antonio

    2016-05-21

    We present the first origin-independent approach for the treatment of two-photon circular dichroism (TPCD) using coupled cluster methods. The approach is assessed concerning its behavior on the choice of the basis set and different coupled cluster methods. We also provide a comparison of results from CC2 with those from density functional theory using the CAM-B3LYP functional. Concerning the basis set we note that in most cases an augmented triple zeta basis or a doubly augmented double zeta basis is needed for reasonably converged results. In the comparison of different coupled cluster methods results from CCSD, CC3 and CC2 have been found to be quite similar in most cases, while CCS results differ remarkably from the results at the higher levels. However, this proof-of-principle study also shows that further benchmarking of DFT and CC2 against accurate coupled cluster reference values (e.g. CCSD or CC3) is needed. PMID:27140590

  7. Coupled cluster expansions for the massive Schwinger model in the lattice Hamiltonian formalism

    SciTech Connect

    Fang, Xi-Yan; Schutte, D.; Wethkamp, V.; Wichmann, A.

    2001-07-01

    The coupled cluster method is used to study the lattice massive Schwinger model with staggered fermions. The vacuum energy and mass gaps are calculated. Good agreement is found between these calculations, the exact results in the continuum limit, and the results obtained by other approximation methods.

  8. Protonation and Proton-Coupled Electron Transfer at S-Ligated [4Fe-4S] Clusters

    PubMed Central

    Morris, Wesley D.; Darcy, Julia W.; Mayer, James M.

    2015-01-01

    Biological [Fe-S] clusters are increasingly recognized to undergo proton-coupled electron transfer (PCET), but the site of protonation, mechanism, and role for PCET remains largely unknown. Here we explore this reactivity with synthetic model clusters. Protonation of the arylthiolate-ligated [4Fe-4S] cluster [Fe4S4(SAr)4]2- (1, SAr = S-2,4-6-(iPr)3C6H2) leads to thiol dissociation, reversibly forming [Fe4S4(SAr)3L]1- (2) + ArSH (L = solvent, and/or conjugate base). Solutions of 2 + ArSH react with the nitroxyl radical TEMPO to give [Fe4S4(SAr)4]1- (1ox) and TEMPOH. This reaction involves PCET coupled to thiolate association and may proceed via the unobserved protonated cluster [Fe4S4(SAr)3(HSAr)]1-(1-H). Similar reactions with this and related clusters proceed comparably. An understanding of the PCET thermochemistry of this cluster system has been developed, encompassing three different redox levels and two protonation states. PMID:25965413

  9. Protonation and Proton-Coupled Electron Transfer at S-Ligated [4Fe-4S] Clusters.

    PubMed

    Saouma, Caroline T; Morris, Wesley D; Darcy, Julia W; Mayer, James M

    2015-06-15

    Biological [Fe-S] clusters are increasingly recognized to undergo proton-coupled electron transfer (PCET), but the site of protonation, mechanism, and role for PCET remains largely unknown. Here we explore this reactivity with synthetic model clusters. Protonation of the arylthiolate-ligated [4Fe-4S] cluster [Fe4 S4 (SAr)4 ](2-) (1, SAr=S-2,4-6-(iPr)3 C6 H2 ) leads to thiol dissociation, reversibly forming [Fe4 S4 (SAr)3 L](1-) (2) and ArSH (L=solvent, and/or conjugate base). Solutions of 2+ArSH react with the nitroxyl radical TEMPO to give [Fe4 S4 (SAr)4 ](1-) (1ox ) and TEMPOH. This reaction involves PCET coupled to thiolate association and may proceed via the unobserved protonated cluster [Fe4 S4 (SAr)3 (HSAr)](1-) (1-H). Similar reactions with this and related clusters proceed comparably. An understanding of the PCET thermochemistry of this cluster system has been developed, encompassing three different redox levels and two protonation states. PMID:25965413

  10. Spin-Orbit Coupling Effects in AumPtn Clusters (m + n = 4).

    PubMed

    Moreno, Norberto; Ferraro, Franklin; Flórez, Elizabeth; Hadad, C Z; Restrepo, Albeiro

    2016-03-17

    A study of AumPtn(m + n = 4) clusters with and without spin-orbit (SO) coupling using scalar relativistic (SR) and two component methods with the ZORA Hamiltonian was carried out. We employed the PW91 functional in conjunction with the all-electron TZ2P basis set. This paper offers a detailed analysis of the SO effects on the cluster geometries, on the LUMO-HOMO gap, on the charge distribution, and on the relative energies for each relativistic method. In general, SO coupling led to an energetic rearrangement of the species, to changes in geometries and structural preferences, to changes in the structural identity of the global minimum for the Au3Pt, AuPt3 and Pt4 cases, and to a reduction of relative energies among the clusters, an effect that appears stronger as the amount of Pt increases. PMID:26894819

  11. Experimental observation of chimera and cluster states in a minimal globally coupled network

    NASA Astrophysics Data System (ADS)

    Hart, Joseph D.; Bansal, Kanika; Murphy, Thomas E.; Roy, Rajarshi

    2016-09-01

    A "chimera state" is a dynamical pattern that occurs in a network of coupled identical oscillators when the symmetry of the oscillator population is broken into synchronous and asynchronous parts. We report the experimental observation of chimera and cluster states in a network of four globally coupled chaotic opto-electronic oscillators. This is the minimal network that can support chimera states, and our study provides new insight into the fundamental mechanisms underlying their formation. We use a unified approach to determine the stability of all the observed partially synchronous patterns, highlighting the close relationship between chimera and cluster states as belonging to the broader phenomenon of partial synchronization. Our approach is general in terms of network size and connectivity. We also find that chimera states often appear in regions of multistability between global, cluster, and desynchronized states.

  12. Study on Cluster Formation of Poly 2-HYDROXYETHYL Methacrylate Functionalized Single-Walled Carbon Nanotubes

    NASA Astrophysics Data System (ADS)

    Ashok Kumar, Nanjundan; Kim, Sung Hun; Kim, Jong Tae; Lim, Kwon Taek; Jeong, Yeon Tae

    Cluster-like network structures of single-walled carbon nanotubes (SWNTs) were synthesized by chemical grafting poly 2-hydroxyethyl methacrylate (polyHEMA) to the sidewalls of SWNTs. Acid chloride-functionalized tubes were coupled with commercially available HEMA monomer, which was in turn polymerized using a radical initiator. Fourier transform infrared spectroscopy and X-ray photoelectron spectroscopy were used to identify the surface changes on the nanocomposites. Microscopic observations of the nanotube complexes by field emission scanning electron microscopy (FE-SEM) show that the tubes were dispersed and formed cluster-like network, branched structures with less bundling, thus, strongly suggesting a firm coating of the polymer on nanotube walls. The coating was further confirmed by transmission electron microscopy. The thermal properties of the nanotube complex as studied by thermal gravimetric analysis (TGA) revealed that coating enhanced stability of the complex, when compared to that of bulk polyHEMA and pristine SWNTs. The nanotube complexes showed excellent suspension stability when dispersed in organic solvent.

  13. Magnetization reversal of a single cobalt cluster using a RF field pulse

    NASA Astrophysics Data System (ADS)

    Tamion, A.; Raufast, C.; Bonet, E.; Dupuis, V.; Fournier, T.; Crozes, T.; Bernstein, E.; Wernsdorfer, W.

    2010-05-01

    Technological improvements require the understanding of dynamical magnetization reversal processes at the nanosecond time scales. In this paper, we present the first magnetization reversal measurements performed on a single cobalt cluster (counting only a thousand of spins), using the micro-superconducting quantum interference device (SQUID) technique by applying a constant magnetic field combined with a radio-frequency (RF) field pulse. First of all, we present the different technical steps necessary to detect the magnetic reversals at low temperature ( T=35 mK) of a well-defined nanoparticle prepared by low energy clusters beam deposition (LECBD). We previously showed that the three-dimensional (3D)-switching Stoner-Wohlfarth astroid represents the magnetic anisotropy of the nanoparticle. Then, an improved device coupled with a gold stripe line, allow us to reverse such macrospin, using a RF pulse. A qualitative understanding of the magnetization reversal by non-linear resonance has been obtained with the Landau-Lifschitz-Gilbert (LLG) equation.

  14. A Ferromagnetic Salicylaldoximate/Azide Mn(II)2Mn(III)6 Cluster with an S = 17 Ground State and a Single-Molecule-Magnet Response.

    PubMed

    Vicente, R; El Fallah, M S; Casanovas, B; Font-Bardia, M; Escuer, A

    2016-06-20

    One new Mn(II)2Mn(III)6 cluster exhibiting an S = 17 spin ground state and single-molecule-magnet properties has been designed linking Mn(III)3-salicylaldoximate triangles and tetracoordinated Mn(II) cations by means of end-on azido bridges. The ferromagnetic coupling has been rationalized as a function of their structural parameters. PMID:27227379

  15. Mobile clusters of single board computers: an option for providing resources to student projects and researchers.

    PubMed

    Baun, Christian

    2016-01-01

    Clusters usually consist of servers, workstations or personal computers as nodes. But especially for academic purposes like student projects or scientific projects, the cost for purchase and operation can be a challenge. Single board computers cannot compete with the performance or energy-efficiency of higher-value systems, but they are an option to build inexpensive cluster systems. Because of the compact design and modest energy consumption, it is possible to build clusters of single board computers in a way that they are mobile and can be easily transported by the users. This paper describes the construction of such a cluster, useful applications and the performance of the single nodes. Furthermore, the clusters' performance and energy-efficiency is analyzed by executing the High Performance Linpack benchmark with a different number of nodes and different proportion of the systems total main memory utilized. PMID:27064532

  16. Linear-Scaling Coupled Cluster with Perturbative Triple Excitations: The Divide-Expand-Consolidate CCSD(T) Model.

    PubMed

    Eriksen, Janus J; Baudin, Pablo; Ettenhuber, Patrick; Kristensen, Kasper; Kjærgaard, Thomas; Jørgensen, Poul

    2015-07-14

    We propose a reformulation of the traditional (T) triples correction to the coupled cluster singles and doubles (CCSD) energy in terms of local Hartree-Fock (HF) orbitals such that its structural form aligns with our recently developed linear-scaling divide-expand-consolidate (DEC) coupled cluster family of local correlation methods. In a DEC-CCSD(T) calculation, a basis of local occupied and virtual HF orbitals is used to partition the correlated calculation on the full system into a number of independent atomic fragment and pair fragment calculations, each performed within a truncated set of the complete orbital space. In return, this leads to a massively parallel algorithm for the evaluation of the DEC-CCSD(T) correlation energy, which formally scales linearly with the size of the full system and has a tunable precision with respect to a conventional CCSD(T) calculation via a single energy-based input threshold. The theoretical developments are supported by proof of concept DEC-CCSD(T) calculations on a series of medium-sized molecular systems. PMID:26575735

  17. The Effect of Approximating Some Molecular Integrals in Coupled-Cluster Calculations: Fundamental Frequencies and Rovibrational Spectroscopic Constants of Cyclopropenylidene

    NASA Technical Reports Server (NTRS)

    Lee, Timothy J.; Dateo, Christopher E.

    2005-01-01

    The singles and doubles coupled-cluster method that includes a perturbational estimate of connected triple excitations, denoted CCSD(T), has been used, in conjunction with approximate integral techniques, to compute highly accurate rovibrational spectroscopic constants of cyclopropenylidene, C3H2. The approximate integral technique was proposed in 1994 by Rendell and Lee in order to avoid disk storage and input/output bottlenecks, and today it will also significantly aid in the development of algorithms for distributed memory, massively parallel computer architectures. It is shown in this study that use of approximate integrals does not impact the accuracy of CCSD(T) calculations. In addition, the most accurate spectroscopic data yet for C3H2 is presented based on a CCSD(T)/cc-pVQZ quartic force field that is modified to include the effects of core-valence electron correlation. Cyclopropenylidene is of great astronomical and astrobiological interest because it is the smallest aromatic ringed compound to be positively identified in the interstellar medium, and is thus involved in the prebiotic processing of carbon and hydrogen. The singles and doubles coupled-cluster method that includes a perturbational estimate of

  18. Benchmarking the completely renormalised equation-of-motion coupled-cluster approaches for vertical excitation energies

    NASA Astrophysics Data System (ADS)

    Piecuch, Piotr; Hansen, Jared A.; Ajala, Adeayo O.

    2015-10-01

    The vertical excitation energies for a comprehensive test set of about 150 singlet excited states of 28 medium-sized organic molecules computed using two variants of the completely renormalised (CR) equation-of-motion (EOM) coupled-cluster (CC) method with singles, doubles, and non-iterative triples, abbreviated as δ-CR-EOMCCSD(T), and the analogous two variants of the newer, left-eigenstate δ-CR-EOMCC(2,3) approach are benchmarked against the previously published CASPT2, CC3, and EOMCCSDT-3 results, as well as the suggested theoretical best estimate (TBE) values. The δ-CR-EOMCC approaches are also used to identify and characterise about 50 additional excited states, including several states having substantial two-electron excitation components, which have not been found in the previous work and which can be used in future benchmark studies. It is demonstrated that the non-iterative triples corrections to the EOMCCSD excitation energies defining the relatively inexpensive, single-reference, black-box δ-CR-EOMCC approaches provide significant improvements in the EOMCCSD data, while closely matching the results of the iterative and considerably more expensive CC3 and EOMCCSDT-3 calculations and their CASPT2 and TBE counterparts. It is also shown that the δ-CR-EOMCC methods, especially δ-CR-EOMCC(2,3), are capable of bringing the results of the CC3 and EOMCCSDT-3 calculations to a closer agreement with the CASPT2 and TBE data, demonstrating the utility of the cost-effective δ-CR-EOMCC methods in applications involving molecular electronic spectra. We show that there may exist a relationship between the magnitude of the triples corrections defining δ-CR-EOMCC approaches and the reduced excitation level diagnostic resulting from EOMCCSD.

  19. Benchmarking the completely renormalised equation-of-motion coupled-cluster approaches for vertical excitation energies

    DOE PAGESBeta

    Piecuch, Piotr; Hansen, Jared A.; Ajala, Adeayo O.

    2015-09-15

    When vertical energies are excited for a comprehensive test set of about 150 singlet excited states of 28 medium-sized organic molecules computed using two variants of the completely renormalised (CR) equation-of-motion (EOM) coupled-cluster (CC) method with singles, doubles, and non-iterative triples, abbreviated as δ-CR-EOMCCSD(T), and the analogous two variants of the newer, left-eigenstate δ-CR-EOMCC(2,3) approach are benchmarked against the previously published CASPT2, CC3, and EOMCCSDT-3 results, as well as the suggested theoretical best estimate (TBE) values. The δ-CR-EOMCC approaches are also used to identify and characterise about 50 additional excited states, including several states having substantial two-electron excitation components, whichmore » have not been found in the previous work and which can be used in future benchmark studies. We demonstrated that the non-iterative triples corrections to the EOMCCSD excitation energies defining the relatively inexpensive, single-reference, black-box δ-CR-EOMCC approaches provide significant improvements in the EOMCCSD data, while closely matching the results of the iterative and considerably more expensive CC3 and EOMCCSDT-3 calculations and their CASPT2 and TBE counterparts. It is also shown that the δ-CR-EOMCC methods, especially δ-CR-EOMCC(2,3), are capable of bringing the results of the CC3 and EOMCCSDT-3 calculations to a closer agreement with the CASPT2 and TBE data, demonstrating the utility of the cost-effective δ-CR-EOMCC methods in applications involving molecular electronic spectra. Finally, we show that there may exist a relationship between the magnitude of the triples corrections defining δ-CR-EOMCC approaches and the reduced excitation level diagnostic resulting from EOMCCSD.« less

  20. A view on coupled cluster perturbation theory using a bivariational Lagrangian formulation.

    PubMed

    Kristensen, Kasper; Eriksen, Janus J; Matthews, Devin A; Olsen, Jeppe; Jørgensen, Poul

    2016-02-14

    We consider two distinct coupled cluster (CC) perturbation series that both expand the difference between the energies of the CCSD (CC with single and double excitations) and CCSDT (CC with single, double, and triple excitations) models in orders of the Møller-Plesset fluctuation potential. We initially introduce the E-CCSD(T-n) series, in which the CCSD amplitude equations are satisfied at the expansion point, and compare it to the recently developed CCSD(T-n) series [J. J. Eriksen et al., J. Chem. Phys. 140, 064108 (2014)], in which not only the CCSD amplitude, but also the CCSD multiplier equations are satisfied at the expansion point. The computational scaling is similar for the two series, and both are term-wise size extensive with a formal convergence towards the CCSDT target energy. However, the two series are different, and the CCSD(T-n) series is found to exhibit a more rapid convergence up through the series, which we trace back to the fact that more information at the expansion point is utilized than for the E-CCSD(T-n) series. The present analysis can be generalized to any perturbation expansion representing the difference between a parent CC model and a higher-level target CC model. In general, we demonstrate that, whenever the parent parameters depend upon the perturbation operator, a perturbation expansion of the CC energy (where only parent amplitudes are used) differs from a perturbation expansion of the CC Lagrangian (where both parent amplitudes and parent multipliers are used). For the latter case, the bivariational Lagrangian formulation becomes more than a convenient mathematical tool, since it facilitates a different and faster convergent perturbation series than the simpler energy-based expansion. PMID:26874478

  1. Benchmarking the completely renormalised equation-of-motion coupled-cluster approaches for vertical excitation energies

    SciTech Connect

    Piecuch, Piotr; Hansen, Jared A.; Ajala, Adeayo O.

    2015-09-15

    When vertical energies are excited for a comprehensive test set of about 150 singlet excited states of 28 medium-sized organic molecules computed using two variants of the completely renormalised (CR) equation-of-motion (EOM) coupled-cluster (CC) method with singles, doubles, and non-iterative triples, abbreviated as δ-CR-EOMCCSD(T), and the analogous two variants of the newer, left-eigenstate δ-CR-EOMCC(2,3) approach are benchmarked against the previously published CASPT2, CC3, and EOMCCSDT-3 results, as well as the suggested theoretical best estimate (TBE) values. The δ-CR-EOMCC approaches are also used to identify and characterise about 50 additional excited states, including several states having substantial two-electron excitation components, which have not been found in the previous work and which can be used in future benchmark studies. We demonstrated that the non-iterative triples corrections to the EOMCCSD excitation energies defining the relatively inexpensive, single-reference, black-box δ-CR-EOMCC approaches provide significant improvements in the EOMCCSD data, while closely matching the results of the iterative and considerably more expensive CC3 and EOMCCSDT-3 calculations and their CASPT2 and TBE counterparts. It is also shown that the δ-CR-EOMCC methods, especially δ-CR-EOMCC(2,3), are capable of bringing the results of the CC3 and EOMCCSDT-3 calculations to a closer agreement with the CASPT2 and TBE data, demonstrating the utility of the cost-effective δ-CR-EOMCC methods in applications involving molecular electronic spectra. Finally, we show that there may exist a relationship between the magnitude of the triples corrections defining δ-CR-EOMCC approaches and the reduced excitation level diagnostic resulting from EOMCCSD.

  2. Carbon X-ray absorption spectra of fluoroethenes and acetone: a study at the coupled cluster, density functional, and static-exchange levels of theory.

    PubMed

    Fransson, Thomas; Coriani, Sonia; Christiansen, Ove; Norman, Patrick

    2013-03-28

    Near carbon K-edge X-ray absorption fine structure spectra of a series of fluorine-substituted ethenes and acetone have been studied using coupled cluster and density functional theory (DFT) polarization propagator methods, as well as the static-exchange (STEX) approach. With the complex polarization propagator (CPP) implemented in coupled cluster theory, relaxation effects following the excitation of core electrons are accounted for in terms of electron correlation, enabling a systematic convergence of these effects with respect to electron excitations in the cluster operator. Coupled cluster results have been used as benchmarks for the assessment of propagator methods in DFT as well as the state-specific static-exchange approach. Calculations on ethene and 1,1-difluoroethene illustrate the possibility of using nonrelativistic coupled cluster singles and doubles (CCSD) with additional effects of electron correlation and relativity added as scalar shifts in energetics. It has been demonstrated that CPP spectra obtained with coupled cluster singles and approximate doubles (CC2), CCSD, and DFT (with a Coulomb attenuated exchange-correlation functional) yield excellent predictions of chemical shifts for vinylfluoride, 1,1-difluoroethene, trifluoroethene, as well as good spectral features for acetone in the case of CCSD and DFT. Following this, CPP-DFT is considered to be a viable option for the calculation of X-ray absorption spectra of larger π-conjugated systems, and CC2 is deemed applicable for chemical shifts but not for studies of fine structure features. The CCSD method as well as the more approximate CC2 method are shown to yield spectral features relating to π∗-resonances in good agreement with experiment, not only for the aforementioned molecules but also for ethene, cis-1,2-difluoroethene, and tetrafluoroethene. The STEX approach is shown to underestimate π∗-peak separations due to spectral compressions, a characteristic which is inherent to this

  3. Renormalized coupled-cluster methods exploiting left eigenstates of the similarity-transformed Hamiltonian

    NASA Astrophysics Data System (ADS)

    Piecuch, Piotr; Włoch, Marta

    2005-12-01

    Completely renormalized (CR) coupled-cluster (CC) approaches, such as CR-CCSD(T), in which one corrects the standard CC singles and doubles (CCSD) energy for the effects of triply (T) and other higher-than-doubly excited clusters [K. Kowalski and P. Piecuch, J. Chem. Phys. 113, 18 (2000)], are reformulated in terms of the left eigenstates ⟨Φ∣L of the similarity-transformed Hamiltonian of CC theory. The resulting CR-CCSD(T)L or CR-CC(2,3) and other CR-CCL methods are derived from the new biorthogonal form of the method of moments of CC equations (MMCC) in which, in analogy to the original MMCC theory, one focuses on the noniterative corrections to standard CC energies that recover the exact, full configuration-interaction energies. One of the advantages of the biorthogonal MMCC theory, which will be further analyzed and extended to excited states in a separate paper, is a rigorous size extensivity of the basic ground-state CR-CCL approximations that result from it, which was slightly violated by the original CR-CCSD(T) and CR-CCSD(TQ) approaches. This includes the CR-CCSD(T)L or CR-CC(2,3) method discussed in this paper, in which one corrects the CCSD energy by the relatively inexpensive noniterative correction due to triples. Test calculations for bond breaking in HF, F2, and H2O indicate that the noniterative CR-CCSD(T)L or CR-CC(2,3) approximation is very competitive with the standard CCSD(T) theory for nondegenerate closed-shell states, while being practically as accurate as the full CC approach with singles, doubles, and triples in the bond-breaking region. Calculations of the activation enthalpy for the thermal isomerizations of cyclopropane involving the trimethylene biradical as a transition state show that the noniterative CR-CCSD(T)L approximation is capable of providing activation enthalpies which perfectly agree with experiment.

  4. A Comparison of Single Sample and Bootstrap Methods to Assess Mediation in Cluster Randomized Trials

    ERIC Educational Resources Information Center

    Pituch, Keenan A.; Stapleton, Laura M.; Kang, Joo Youn

    2006-01-01

    A Monte Carlo study examined the statistical performance of single sample and bootstrap methods that can be used to test and form confidence interval estimates of indirect effects in two cluster randomized experimental designs. The designs were similar in that they featured random assignment of clusters to one of two treatment conditions and…

  5. Electrical coupling of isolated cardiomyocyte clusters grown on aligned conductive nanofibrous meshes for their synchronized beating.

    PubMed

    Hsiao, Chun-Wen; Bai, Meng-Yi; Chang, Yen; Chung, Min-Fan; Lee, Ting-Yin; Wu, Cheng-Tse; Maiti, Barnali; Liao, Zi-Xian; Li, Ren-Ke; Sung, Hsing-Wen

    2013-01-01

    Myocardial infarction is often associated with abnormalities in electrical function due to a massive loss of functioning cardiomyocytes. This work develops a mesh, consisting of aligned composite nanofibers of polyaniline (PANI) and poly(lactic-co-glycolic acid) (PLGA), as an electrically active scaffold for coordinating the beatings of the cultured cardiomyocytes synchronously. Following doping by HCl, the electrospun fibers could be transformed into a conductive form carrying positive charges, which could then attract negatively charged adhesive proteins (i.e. fibronectin and laminin) and enhance cell adhesion. During incubation, the adhered cardiomyocytes became associated with each other and formed isolated cell clusters; the cells within each cluster elongated and aligned their morphology along the major axis of the fibrous mesh. After culture, expression of the gap-junction protein connexin 43 was clearly observed intercellularly in isolated clusters. All of the cardiomyocytes within each cluster beat synchronously, implying that the coupling between the cells was fully developed. Additionally, the beating rates among these isolated cell clusters could be synchronized via an electrical stimulation designed to imitate that generated in a native heart. Importantly, improving the impaired heart function depends on electrical coupling between the engrafted cells and the host myocardium to ensure their synchronized beating. PMID:23164424

  6. Biorthogonal moment expansions in coupled-cluster theory: Review of key concepts and merging the renormalized and active-space coupled-cluster methods

    NASA Astrophysics Data System (ADS)

    Shen, Jun; Piecuch, Piotr

    2012-06-01

    After reviewing recent progress in the area of the development of coupled-cluster (CC) methods for quasi-degenerate electronic states that are characterized by stronger non-dynamical correlation effects, including new generations of single- and multi-reference approaches that can handle bond breaking and excited states dominated by many-electron transitions, and after discussing the key elements of the left-eigenstate completely renormalized (CR) CC and equation-of-motion (EOM) CC methods, and the underlying biorthogonal method of moments of CC (MMCC) equations [P. Piecuch, M. Włoch, J. Chem. Phys. 123 (2005) 224105; P. Piecuch, M. Włoch, J.R. Gour, A. Kinal, Chem. Phys. Lett. 418 (2006) 467; M. Włoch, M.D. Lodriguito, P. Piecuch, J.R. Gour, Mol. Phys. 104 (2006) 2149], it is argued that it is beneficial to merge the CR-CC/EOMCC and active-space CC/EOMCC [P. Piecuch, Mol. Phys. 108 (2010) 2987, and references therein] theories into a single formalism. In order to accomplish this goal, the biorthogonal MMCC theory, which provides compact many-body expansions for the differences between the full configuration interaction and CC or, in the case of excited states, EOMCC energies, obtained using conventional truncation schemes in the cluster operator T and excitation operator Rμ, is generalized, so that one can correct the CC/EOMCC energies obtained with arbitrary truncations in T and Rμ for the selected many-electron correlation effects of interest. The resulting moment expansions, defining the new, Flexible MMCC (Flex-MMCC) formalism, and the ensuing CC(P; Q) hierarchy, proposed in the present work, enable one to correct energies obtained in the active-space CC and EOMCC calculations, in which one selects higher many-body components of T and Rμ via active orbitals and which recover much of the relevant non-dynamical and some dynamical electron correlation effects in applications involving potential energy surfaces (PESs) along bond breaking coordinates, for the

  7. General active space commutator-based coupled cluster theory of general excitation rank for electronically excited states: Implementation and application to ScH

    NASA Astrophysics Data System (ADS)

    Hubert, Mickaël; Olsen, Jeppe; Loras, Jessica; Fleig, Timo

    2013-11-01

    We present a new implementation of general excitation rank coupled cluster theory for electronically excited states based on the single-reference multi-reference formalism. The method may include active-space selected and/or general higher excitations by means of the general active space concept. It may employ molecular integrals over the four-component Lévy-Leblond Hamiltonian or the relativistic spin-orbit-free four-component Hamiltonian of Dyall. In an initial application to ground- and excited states of the scandium monohydride molecule we report spectroscopic constants using basis sets of up to quadruple-zeta quality and up to full iterative triple excitations in the cluster operators. Effects due to spin-orbit interaction are evaluated using two-component multi-reference configuration interaction for assessing the accuracy of the coupled cluster results.

  8. General active space commutator-based coupled cluster theory of general excitation rank for electronically excited states: Implementation and application to ScH

    SciTech Connect

    Hubert, Mickaël; Loras, Jessica; Fleig, Timo; Olsen, Jeppe

    2013-11-21

    We present a new implementation of general excitation rank coupled cluster theory for electronically excited states based on the single-reference multi-reference formalism. The method may include active-space selected and/or general higher excitations by means of the general active space concept. It may employ molecular integrals over the four-component Lévy-Leblond Hamiltonian or the relativistic spin-orbit-free four-component Hamiltonian of Dyall. In an initial application to ground- and excited states of the scandium monohydride molecule we report spectroscopic constants using basis sets of up to quadruple-zeta quality and up to full iterative triple excitations in the cluster operators. Effects due to spin-orbit interaction are evaluated using two-component multi-reference configuration interaction for assessing the accuracy of the coupled cluster results.

  9. Tracking single particles motion in shaken wet powder clusters

    NASA Astrophysics Data System (ADS)

    Wenzl, Jennifer; Auernhammer, Guenter K.; Gilson, Laurent

    In many industrial branches wet granulate powders, where the particles are connected via an additional binding liquid, are widely used. Amply investigated were model systems, where the binding liquid is homogeneously distributed, i.e. building a connecting capillary network. In contrast wet granulate model systems with an inhomogeneous liquid distribution have been rarely in focus of research. In this work a model system for wet powders was developed, which is suitable for 3D imaging with confocal microscopy. Fluorescent silica particles were immersed in a mixture of two immiscible liquids, one continuous and one binding liquid. In detail a wet powder cluster, where the binding liquid formed droplets was studied in 3D. During applying a mechanical load the motion of the powder particles and the binding liquid droplets was followed. Deformation of the binding liquid droplets led to an increase of its surface area and energy. When the droplet relaxed to an energetically more favored shape upon further cluster deformation, the sudden release of the stored surface energy led to complex powder particle and droplet motions. The model system illustrated the complex dynamics upon shaking, and showed that the binding liquid dominated the cluster dynamics on a local scale.

  10. A comparative study of single reference correlation methods of the coupled-pair type

    NASA Astrophysics Data System (ADS)

    Wennmohs, Frank; Neese, Frank

    2008-01-01

    Several variants of coupled electron pair type approximations are compared with respect to their accuracy in the prediction of bond distances, harmonic vibrational frequencies and anharmonic corrections for a range of closed-shell diatomic molecules. In the first part of the paper the coupled-electron pair (CEPA) methods (CEPA/1,2,3) are discussed. Extensions of these methods allow the derivation of the correlation energy from the stationarization of a correlation energy functional (CPF/1,2,3 methods). All methods are formulated as diagonally dressed configuration-interaction with single- and double-excitations (CISD) eigenvalue problems. Averaging the diagonal shifts of the CPF methods in various ways lead to the ACPF and AQCC methods. Several small modifications of the shifts for the single excitations are proposed that enhance the stability of the methods (NCPF/1,2,3, NCEPA/1,2,3, NACPF). The reduced shifts are justified by linear response arguments. The implementation of the methods for a closed-shell ground state is described. In the application part, we first tested the size-consistency, exactness for two-electron systems and unitary invariance of the methods. Extensive numerical studies with polarized quadruple- ζ basis sets are employed to test the accuracy of the coupled pair approaches relative to the more elaborate quadratic CI (QCISD) and coupled-cluster (CCSD and CCSD(T)) approaches. Not surprisingly, the CCSD(T) method is the most accurate approach on average. However, the proposed NCPF/1 variant led to even smaller average errors for bond distances (˜0.2 pm relative to ˜0.3 pm for CCSD(T)) while predicting still accurate harmonic frequencies (av. Error ˜25 cm -1 for NCPF/1, ˜8 cm -1 for CCSD(T) and ˜45 cm -1 for CCSD). All coupled pair methods are more accurate than present day DFT approaches (BP86, B3LYP). The exception is the recently proposed double-hybrid B2PLYP functional that approaches the coupled pair performance. Some more difficult

  11. A Single Gene Cluster for Chalcomycins and Aldgamycins: Genetic Basis for Bifurcation of Their Biosynthesis.

    PubMed

    Tang, Xiao-Long; Dai, Ping; Gao, Hao; Wang, Chuan-Xi; Chen, Guo-Dong; Hong, Kui; Hu, Dan; Yao, Xin-Sheng

    2016-07-01

    Aldgamycins are 16-membered macrolide antibiotics with a rare branched-chain sugar d-aldgarose or decarboxylated d-aldgarose at C-5. In our efforts to clone the gene cluster for aldgamycins from a marine-derived Streptomyces sp. HK-2006-1 capable of producing both aldgamycins and chalcomycins, we found that both are biosynthesized from a single gene cluster. Whole-genome sequencing combined with gene disruption established the entire gene cluster of aldgamycins: nine new genes are incorporated with the previously identified chalcomycin gene cluster. Functional analysis of these genes revealed that almDI/almDII, (encoding α/β subunits of pyruvate dehydrogenase) triggers the biosynthesis of aldgamycins, whereas almCI (encoding an oxidoreductase) initiates chalcomycins biosynthesis. This is the first report that aldgamycins and chalcomycins are derived from a single gene cluster and of the genetic basis for bifurcation in their biosynthesis. PMID:27191535

  12. Single Photon Scattering Properties in Coupled-Resonator Waveguide Coupling with a Nanocavity Interacting with an External Mirror

    NASA Astrophysics Data System (ADS)

    Mu-Tian, Cheng; Wei-Wei, Zong; Gen-Long, Ye; Xiao-San, Ma; Jia-Yan, Zhang; Bing, Wang

    2016-06-01

    We investigate theoretically single photon transport properties in coupled-resonator waveguide coupling with a nanocavity interacting with an external mirror. By using the discrete coordinates approach, transmission and reflection amplitudes of the propagating single photon in the waveguide are obtained. The influence of the coupling strength between the nanocavity and the external mirror on the single photon scattering spectra is discussed. We also extend the results to the waveguide with linear and quadratic form dispersion relations. Supported by the National Natural Science Foundation of China under Grant Nos. 11105001 and 61472282, the Anhui Provincial Natural Science Foundation under Grant Nos. 1408085QA22, 1608085MA09, and 1508085MF129.

  13. A Projector-Embedding Approach for Multiscale Coupled-Cluster Calculations Applied to Citrate Synthase.

    PubMed

    Bennie, Simon J; van der Kamp, Marc W; Pennifold, Robert C R; Stella, Martina; Manby, Frederick R; Mulholland, Adrian J

    2016-06-14

    Projector-based embedding has recently emerged as a robust multiscale method for the calculation of various electronic molecular properties. We present the coupling of projector embedding with quantum mechanics/molecular mechanics modeling and apply it for the first time to an enzyme-catalyzed reaction. Using projector-based embedding, we combine coupled-cluster theory, density-functional theory (DFT), and molecular mechanics to compute energies for the proton abstraction from acetyl-coenzyme A by citrate synthase. By embedding correlated ab initio methods in DFT we eliminate functional sensitivity and obtain high-accuracy profiles in a procedure that is straightforward to apply. PMID:27159381

  14. Sizeable Kane-Mele-like spin orbit coupling in graphene decorated with iridium clusters

    NASA Astrophysics Data System (ADS)

    Qin, Yuyuan; Wang, Siqi; Wang, Rui; Bu, Haijun; Wang, Xuefeng; Wang, Xinran; Song, Fengqi; Wang, Baigeng; Wang, Guanghou

    2016-05-01

    The spin-orbit coupling strength of graphene can be enhanced by depositing iridium nanoclusters. Weak localization is intensely suppressed near zero fields after the cluster deposition, rather than changing to weak anti-localization. Fitting the magnetoresistance gives the spin relaxation time, which increases by two orders with the application of a back gate. The spin relaxation time is found to be proportional to the electronic elastic scattering time, demonstrating the Elliot-Yafet spin relaxation mechanism. A sizeable Kane-Mele-like coupling strength of over 5.5 meV is determined by extrapolating the temperature dependence to zero.

  15. Benchmarking density-functional theory calculations of NMR shielding constants and spin-rotation constants using accurate coupled-cluster calculations

    NASA Astrophysics Data System (ADS)

    Teale, Andrew M.; Lutnæs, Ola B.; Helgaker, Trygve; Tozer, David J.; Gauss, Jürgen

    2013-01-01

    Accurate sets of benchmark nuclear-magnetic-resonance shielding constants and spin-rotation constants are calculated using coupled-cluster singles-doubles (CCSD) theory and coupled-cluster singles-doubles-perturbative-triples [CCSD(T)] theory, in a variety of basis sets consisting of (rotational) London atomic orbitals. The accuracy of the calculated coupled-cluster constants is established by a careful comparison with experimental data, taking into account zero-point vibrational corrections. Coupled-cluster basis-set convergence is analyzed and extrapolation techniques are employed to estimate basis-set-limit quantities, thereby establishing an accurate benchmark data set. Together with the set provided for rotational g-tensors and magnetizabilities in our previous work [O. B. Lutnæs, A. M. Teale, T. Helgaker, D. J. Tozer, K. Ruud, and J. Gauss, J. Chem. Phys. 131, 144104 (2009)], 10.1063/1.3242081, it provides a substantial source of consistently calculated high-accuracy data on second-order magnetic response properties. The utility of this benchmark data set is demonstrated by examining a wide variety of Kohn-Sham exchange-correlation functionals for the calculation of these properties. None of the existing approximate functionals provide an accuracy competitive with that provided by CCSD or CCSD(T) theory. The need for a careful consideration of vibrational effects is clearly illustrated. Finally, the pure coupled-cluster results are compared with the results of Kohn-Sham calculations constrained to give the same electronic density. Routes to future improvements are discussed in light of this comparison.

  16. Coupled-cluster theory for atoms and molecules in strong magnetic fields

    SciTech Connect

    Stopkowicz, Stella Lange, Kai K.; Tellgren, Erik I.; Helgaker, Trygve; Gauss, Jürgen

    2015-08-21

    An implementation of coupled-cluster (CC) theory to treat atoms and molecules in finite magnetic fields is presented. The main challenges for the implementation stem from the magnetic-field dependence in the Hamiltonian, or, more precisely, the appearance of the angular momentum operator, due to which the wave function becomes complex and which introduces a gauge-origin dependence. For this reason, an implementation of a complex CC code is required together with the use of gauge-including atomic orbitals to ensure gauge-origin independence. Results of coupled-cluster singles–doubles–perturbative-triples (CCSD(T)) calculations are presented for atoms and molecules with a focus on the dependence of correlation and binding energies on the magnetic field.

  17. Generation of strongly coupled Xe cluster nanoplasmas by low intensive soft x-ray laser irradiation

    SciTech Connect

    Namba, S.; Hasegawa, N.; Kishimoto, M.; Nishikino, M.; Kawachi, T.

    2012-07-11

    A seeding gas jet including Xe clusters was irradiated with a laser-driven plasma soft x-ray laser pulse ({lambda}=13.9 nm, {approx}7 ps, {<=}5 Multiplication-Sign 10{sup 9} W/cm{sup 2}), where the laser photon energy is high enough to ionize 4d core electrons. In order to clarify how the innershell ionization followed by the Auger electron emission is affected under the intense laser irradiation, the electron energy distribution was measured. Photoelectron spectra showed that the peak position attributed to 4d hole shifted to lower energy and the spectral width was broadened with increasing cluster size. Moreover, the energy distribution exhibited that a strongly coupled cluster nanoplasma with several eV was generated.

  18. A coupled-cluster analysis of the photoelectron spectrum of FeCl3

    SciTech Connect

    Watts, John D.; Dupuis, Michel

    2005-08-10

    Coupled-cluster calculations including effects of connected triple excitations have been performed on the ground state of and several electronic states of FeCl3. The vertical electron detachment energies closely correspond to the band energies of the photoelectron spectrum recently obtained by Yang et al. [Yang et al. J. chem. Phys., 119, 8311 (2003).], and thus provide a possible assignment of the spectrum.

  19. Communication: Coupled-cluster interpretation of the photoelectron spectrum of Au{sub 3}{sup −}

    SciTech Connect

    Bauman, Nicholas P.; Piecuch, Piotr; Hansen, Jared A.; Ehara, Masahiro

    2014-09-14

    We use the scalar relativistic ionized equation-of-motion coupled-cluster approaches, correlating valence and semi-core electrons and including up to 3-hole-2-particle terms in the ionizing operator, to investigate the photoelectron spectrum of Au{sub 3}{sup −}. We provide an accurate assignment of peaks and shoulders in the experimental photoelectron spectrum of Au{sub 3}{sup −} for the first time.

  20. Multisublevel Magnetoquantum Conductance in Single and Coupled Double Quantum Wires

    SciTech Connect

    Lyo, Sungkwun Ken; Huang, Danhong

    2001-09-15

    We study the ballistic and diffusive magnetoquantum transport using a typical quantum point contact geometry for single and tunnel-coupled double wires that are wide (less than or similar to1 mum) in one perpendicular direction with densely populated sublevels and extremely confined in the other perpendicular (i.e., growth) direction. A general analytic solution to the Boltzmann equation is presented for multisublevel elastic scattering at low temperatures. The solution is employed to study interesting magnetic-field dependent behavior of the conductance such as a large enhancement and quantum oscillations of the conductance for various structures and field orientations. These phenomena originate from the following field-induced properties: magnetic confinement, displacement of the initial- and final-state wave functions for scattering, variation of the Fermi velocities, mass enhancement, depopulation of the sublevels and anticrossing (in double quantum wires). The magnetoconductance is strikingly different in long diffusive (or rough. dirty) wires from the quantized conductance in short ballistic (or clean) wires. Numerical results obtained for the rectangular confinement potentials in the growth direction are satisfactorily interpreted in terms of the analytic solutions based on harmonic confinement potentials. Some of the predicted features of the field-dependent diffusive and quantized conductances are consistent with recent data from GaAs/AlxGa1-xAs double quantum wires.

  1. Direct Photonic-Plasmonic Coupling and Routing in Single Nanowires

    SciTech Connect

    Yan, Rouxue; Pausauskie, Peter; Huang, Jiaxing; Yang, Piedong

    2009-10-20

    Metallic nanoscale structures are capable of supporting surface plasmon polaritons (SPPs), propagating collective electron oscillations with tight spatial confinement at the metal surface. SPPs represent one of the most promising structures to beat the diffraction limit imposed by conventional dielectric optics. Ag nano wires have drawn increasing research attention due to 2D sub-100 nm mode confinement and lower losses as compared with fabricated metal structures. However, rational and versatile integration of Ag nanowires with other active and passive optical components, as well as Ag nanowire based optical routing networks, has yet to be achieved. Here, we demonstrate that SPPs can be excited simply by contacting a silver nanowire with a SnO2 nanoribbon that serves both as an unpolarized light source and a dielectric waveguide. The efficient coupling makes it possible to measure the propagation-distance-dependent waveguide spectra and frequency-dependent propagation length on a single Ag nanowire. Furthermore, we have demonstrated prototypical photonic-plasmonic routing devices, which are essential for incorporating low-loss Ag nanowire waveguides as practical components into high-capacity photonic circuits.

  2. The exchange coupling in Cr3On (n = 0-3) clusters.

    PubMed

    Janssens, Ewald; Hou, Xin Juan; Neukermans, Sven; Wang, Xin; Silverans, Roger E; Lievens, Peter; Nguyen, Minh Tho

    2007-05-24

    The structures of neutral and cationic Cr3On0,+ (n = 0-3) clusters are calculated with density functional theory employing the BLYP and BP86 functionals. Gas-phase CrnOm clusters are produced by laser vaporization and characterized with time-of-flight mass spectrometry. The ionization energies of Cr3On (n = 0-2) are determined with threshold photoionization spectroscopy using tunable laser light in the 4.5-5.60 eV range. On the basis of a comparison between experimental and calculated ionization energies, ground-state structures were assigned. The influence of sequential addition of oxygen on the exchange coupling between the chromium atoms is investigated providing evidence for enhanced ferromagnetic coupling of chromium atoms in both the neutral and cationic Cr3On0,+ clusters. This evidence of superexchange interaction through oxygen extends earlier ideas to control the magnetic interactions in the chromium dimer via chemical reactions with oxygen toward larger chromium clusters. PMID:17474720

  3. Modeling Neurovascular Coupling from Clustered Parameter Sets for Multimodal EEG-NIRS

    PubMed Central

    Talukdar, M. Tanveer; Frost, H. Robert; Diamond, Solomon G.

    2015-01-01

    Despite significant improvements in neuroimaging technologies and analysis methods, the fundamental relationship between local changes in cerebral hemodynamics and the underlying neural activity remains largely unknown. In this study, a data driven approach is proposed for modeling this neurovascular coupling relationship from simultaneously acquired electroencephalographic (EEG) and near-infrared spectroscopic (NIRS) data. The approach uses gamma transfer functions to map EEG spectral envelopes that reflect time-varying power variations in neural rhythms to hemodynamics measured with NIRS during median nerve stimulation. The approach is evaluated first with simulated EEG-NIRS data and then by applying the method to experimental EEG-NIRS data measured from 3 human subjects. Results from the experimental data indicate that the neurovascular coupling relationship can be modeled using multiple sets of gamma transfer functions. By applying cluster analysis, statistically significant parameter sets were found to predict NIRS hemodynamics from EEG spectral envelopes. All subjects were found to have significant clustered parameters (P < 0.05) for EEG-NIRS data fitted using gamma transfer functions. These results suggest that the use of gamma transfer functions followed by cluster analysis of the resulting parameter sets may provide insights into neurovascular coupling in human neuroimaging data. PMID:26089979

  4. Coupled electrophysiological recording and single cell transcriptome analyses revealed molecular mechanisms underlying neuronal maturation.

    PubMed

    Chen, Xiaoying; Zhang, Kunshan; Zhou, Liqiang; Gao, Xinpei; Wang, Junbang; Yao, Yinan; He, Fei; Luo, Yuping; Yu, Yongchun; Li, Siguang; Cheng, Liming; Sun, Yi E

    2016-03-01

    The mammalian brain is heterogeneous, containing billions of neurons and trillions of synapses forming various neural circuitries, through which sense, movement, thought, and emotion arise. The cellular heterogeneity of the brain has made it difficult to study the molecular logic of neural circuitry wiring, pruning, activation, and plasticity, until recently, transcriptome analyses with single cell resolution makes decoding of gene regulatory networks underlying aforementioned circuitry properties possible. Here we report success in performing both electrophysiological and whole-genome transcriptome analyses on single human neurons in culture. Using Weighted Gene Coexpression Network Analyses (WGCNA), we identified gene clusters highly correlated with neuronal maturation judged by electrophysiological characteristics. A tight link between neuronal maturation and genes involved in ubiquitination and mitochondrial function was revealed. Moreover, we identified a list of candidate genes, which could potentially serve as biomarkers for neuronal maturation. Coupled electrophysiological recording and single cell transcriptome analysis will serve as powerful tools in the future to unveil molecular logics for neural circuitry functions. PMID:26883038

  5. Coupled motion of Xe clusters and quantum vortices in He nanodroplets

    NASA Astrophysics Data System (ADS)

    Jones, Curtis F.; Bernando, Charles; Tanyag, Rico Mayro P.; Bacellar, Camila; Ferguson, Ken R.; Gomez, Luis F.; Anielski, Denis; Belkacem, Ali; Boll, Rebecca; Bozek, John; Carron, Sebastian; Cryan, James; Englert, Lars; Epp, Sascha W.; Erk, Benjamin; Foucar, Lutz; Hartmann, Robert; Neumark, Daniel M.; Rolles, Daniel; Rudenko, Artem; Siefermann, Katrin R.; Weise, Fabian; Rudek, Benedikt; Sturm, Felix P.; Ullrich, Joachim; Bostedt, Christoph; Gessner, Oliver; Vilesov, Andrey F.

    2016-05-01

    Single He nanodroplets doped with Xe atoms are studied via ultrafast coherent x-ray diffraction imaging. The diffraction images show that rotating He nanodroplets about 200 nm in diameter contain a small number of symmetrically arranged quantum vortices decorated with Xe clusters. Unexpected large distances of the vortices from the droplet center (≈0.7 -0.8 droplet radii) are explained by a significant contribution of the Xe dopants to the total angular momentum of the droplets and a stabilization of widely spaced vortex configurations by the trapped Xe clusters.

  6. In Situ Characterization of Bak Clusters Responsible for Cell Death Using Single Molecule Localization Microscopy

    PubMed Central

    Nasu, Yusuke; Benke, Alexander; Arakawa, Satoko; Yoshida, Go J.; Kawamura, Genki; Manley, Suliana; Shimizu, Shigeomi; Ozawa, Takeaki

    2016-01-01

    Apoptosis plays a pivotal role in development and tissue homeostasis in multicellular organisms. Clustering of Bak proteins on the mitochondrial outer membrane is responsible for the induction of apoptosis by evoking a release of pro-apoptotic proteins from mitochondria into cytosol. However, how the protein cluster permeabilizes the mitochondrial membrane remains unclear because elucidation of the cluster characteristics such as size and protein density has been hampered by the diffraction-limited resolution of light microscopy. Here, we describe an approach to quantitatively characterize Bak clusters in situ based on single molecule localization. We showed that Bak proteins form densely packed clusters at the nanoscale on mitochondria during apoptosis. Quantitative analysis based on the localization of each Bak protein revealed that the density of Bak protein is uniform among clusters although the cluster size is highly heterogeneous. Our approach provides unprecedented information on the size and protein density of Bak clusters possibly critical for the permeabilization and is applicable for the analysis of different cluster formations. PMID:27293178

  7. Adsorption of a single gold or silver atom on vanadium oxide clusters.

    PubMed

    Ding, Xun-Lei; Wang, Dan; Li, Rui-Jie; Liao, Heng-Lu; Zhang, Yan; Zhang, Hua-Yong

    2016-03-30

    The bonding properties between a single atom and its support have a close relationship with the stability and reactivity of single-atom catalysts. As a model system, the structural and electronic properties of bimetallic oxide clusters MV3Oy(q) (M = Au or Ag, q = 0, ±1, and y = 6-8) are systematically studied using density functional theory. The single noble metal atom Au or Ag tends to be adsorbed on the periphery of the V oxide clusters. Au prefers V sites for oxygen-poor clusters and O sites for oxygen-rich clusters, while Ag prefers O sites for most cases. According to natural population analysis, Au may possess positive or negative charges in the bimetallic oxide clusters, while Ag usually possesses positive charges. The bonding between Au and V has relatively high covalent character according to the bond order analysis. This work may provide some clues for understanding the bonding properties of single noble metal atoms on the support in practical single-atom catalysts, and serve as a starting point for further theoretical studies on the reaction mechanisms of related catalytic systems. PMID:26984782

  8. Explicitly correlated equation-of-motion coupled-cluster methods for excited and electron-attached states.

    PubMed

    Bokhan, Denis; Ten-No, Seiichiro

    2010-11-28

    Based on the linearly approximated F12 coupled cluster singles and doubles [CCSD(F12)] model, equation-of-motion [EOM-CCSD(F12)] methods for electron affinities (EAs) and excitation energies (EEs) have been formulated and implemented. Extended electron-attachment and excitation operators are introduced for balanced descriptions of both neutral and electron-attached (or excited) states. In our implementation the cusp conditions are used for the definition of extended electron-attachment (excitation) operators. It is shown that EA-EOM-CCSD(F12) provides vertical electron affinities accurate to 0.1 eV compared to those in the complete basis set limit. Numerical tests conducted on a selection of small molecules have also shown notable improvement in Rydberg excitation energies compared to valence ones by the use of correlation factors. PMID:21133437

  9. Coupled-Cluster Theory Employing Approximate Integrals: An Approach to Avoid the Input/Output and Storage Bottlenecks

    NASA Technical Reports Server (NTRS)

    Rendell, Alistair P.; Lee, Timothy J.

    1994-01-01

    By representing orbital products in an expansion basis, certain classes of two-electron integrals are approximated for use in CCSD(T) calculations (singles and doubles coupled-cluster plus a perturbational estimate of the effects of connected triple excitations). This leads to a very large reduction in disk storage and input/output requirements, with usually only a modest increase in computational effort. The new procedure will allow very large CCSD(T) calculations to be undertaken, limited only by available processor time. Using the molecular basis as the expansion basis, explicit numerical comparisons of equilibrium geometries, harmonic frequencies, and energy differences indicate that the error due to the use of approximate integrals is less than the error associated with truncation of the molecular basis set.

  10. Inducing Transient Charge State of a Single Water Cluster on Cu(111) Surface.

    PubMed

    Guo, Yang; Ding, Zijing; Sun, Lihuan; Li, Jianmei; Meng, Sheng; Lu, Xinghua

    2016-04-26

    The hydrated electron on solid surface is a crucial species to interfacial chemistry. We present a joint low-temperature scanning tunneling microscopy and density functional theory investigation to explore the existence of a transient hydrated electron state induced by injecting tunneling electrons into a single water nonamer cluster on Cu(111) surface. The directional diffusion of water cluster under the Coulomb repulsive potential has been observed as evidence for the emergence of the transient hydrated electron. A critical structure transformation in water cluster for the emergence of hydrated electron has been identified. A charging mechanism has been proposed based on density functional theory calculation and scanning tunneling microscope results. PMID:27007702

  11. Communities of solutions in single solution clusters of a random K -satisfiability formula

    NASA Astrophysics Data System (ADS)

    Zhou, Haijun; Ma, Hui

    2009-12-01

    The solution space of a K -satisfiability (K-SAT) formula is a collection of solution clusters, each of which contains all the solutions that are mutually reachable through a sequence of single-spin flips. Knowledge of the statistical property of solution clusters is valuable for a complete understanding of the solution space structure and the computational complexity of the random K-SAT problem. This paper explores single solution clusters of random 3- and 4-SAT formulas through unbiased and biased random-walk processes and the replica-symmetric cavity method of statistical physics. We find that the giant connected component of the solution space has already formed many different communities when the constraint density of the formula is still lower than the solution space clustering transition point. Solutions of the same community are more similar with each other and more densely connected with each other than with the other solutions. The entropy density of a solution community is calculated using belief propagation and is found to be different for different communities of the same cluster. When the constraint density is beyond the clustering transition point, the same behavior is observed for the solution clusters reached by several stochastic search algorithms. Taking together, the results of this work suggest a refined picture on the evolution of the solution space structure of the random K-SAT problem; they may also be helpful for designing heuristic algorithms.

  12. Communities of solutions in single solution clusters of a random K-satisfiability formula.

    PubMed

    Zhou, Haijun; Ma, Hui

    2009-12-01

    The solution space of a K-satisfiability (K-SAT) formula is a collection of solution clusters, each of which contains all the solutions that are mutually reachable through a sequence of single-spin flips. Knowledge of the statistical property of solution clusters is valuable for a complete understanding of the solution space structure and the computational complexity of the random K-SAT problem. This paper explores single solution clusters of random 3- and 4-SAT formulas through unbiased and biased random-walk processes and the replica-symmetric cavity method of statistical physics. We find that the giant connected component of the solution space has already formed many different communities when the constraint density of the formula is still lower than the solution space clustering transition point. Solutions of the same community are more similar with each other and more densely connected with each other than with the other solutions. The entropy density of a solution community is calculated using belief propagation and is found to be different for different communities of the same cluster. When the constraint density is beyond the clustering transition point, the same behavior is observed for the solution clusters reached by several stochastic search algorithms. Taking together, the results of this work suggest a refined picture on the evolution of the solution space structure of the random K-SAT problem; they may also be helpful for designing heuristic algorithms. PMID:20365232

  13. The evolution of lineage-specific clusters of single nucleotide substitutions in the human genome.

    PubMed

    Xu, Ke; Wang, Jianrong; Elango, Navin; Yi, Soojin V

    2013-10-01

    Genomic regions harboring large numbers of human-specific single nucleotide substitutions are of significant interest since they are potential genomic foci underlying the evolution of human-specific traits as well as human adaptive evolution. Previous studies aimed to identify such regions either used pre-defined genomic locations such as coding sequences and conserved genomic elements or employed sliding window methods. Such approaches may miss clusters of substitutions occurring in regions other than those pre-defined locations, or not be able to distinguish human-specific clusters of substitutions from regions of generally high substitution rates. Here, we conduct a 'maximal segment' analysis to scan the whole human genome to identify clusters of human-specific substitutions that occurred since the divergence of the human and the chimpanzee genomes. This method can identify species-specific clusters of substitutions while not relying on pre-defined regions. We thus identify thousands of clusters of human-specific single nucleotide substitutions. The evolution of such clusters is driven by a combination of several different evolutionary processes including increased regional mutation rate, recombination-associated processes, and positive selection. These newly identified regions of human-specific substitution clusters include large numbers of previously identified human accelerated regions, and exhibit significant enrichments of genes involved in several developmental processes. Our study provides a useful tool to study the evolution of the human genome. PMID:23770436

  14. Inactive excitations in Mukherjee's state-specific multireference coupled cluster theory treated with internal contraction: Development and applications

    NASA Astrophysics Data System (ADS)

    Das, Sanghamitra; Pathak, Shubhrodeep; Datta, Dipayan; Mukherjee, Debashis

    2012-04-01

    One generic difficulty of most state-specific many-body formalisms using the Jeziorski-Monkhorst ansatz: ψ = ∑μexp (Tμ)|ϕμ⟩cμ for the wave-operators is the large number of redundant cluster amplitudes. The number of cluster amplitudes up to a given rank is many more in number compared to the dimension of the Hilbert Space spanned by the virtual functions of up to the same rank of excitations. At the same time, all inactive excitations - though linearly independent - are far too numerous. It is well known from the success of the contracted multi-reference configuration interaction (MRCI(SD)) that, at least for the inactive double excitations, their model space dependence (μ-dependence) is weak. Considerable simplifications can thus be obtained by using a partially internally contracted description, which uses the physically appealing approximation of taking the inactive excitations Ti to be independent of the model space labels (μ-independent). We propose and implement in this paper such a formalism with internal contractions for inactive excitations (ICI) within Mukherjee's state-specific multi-reference coupled cluster theory (SS-MRCC) framework (referred to from now on as the ICI-SS-MRCC). To the extent the μ-independence of Ti is valid, we expect the ICI-SS-MRCC to retain the conceptual advantages of size-extensivity yet using a drastically reduced number of cluster amplitudes without sacrificing accuracy. Moreover, greater coupling is achieved between the virtual functions reached by inactive excitations as a result of the internal contraction while retaining the original coupling term for the μ-dependent excitations akin to the parent theory. Another major advantage of the ICI-SS-MRCC, unlike the other analogous internally contracted theories, such as IC-MRCISD, CASPT2, or MRMP2, is that it can use relaxed coefficients for the model functions. However, at the same time it employs projection manifolds for the virtuals obtained from inactive n hole

  15. The general-model-space state-universal coupled-cluster method exemplified by the LiH molecule

    NASA Astrophysics Data System (ADS)

    Li, Xiangzhu; Paldus, Josef

    2003-09-01

    The salient features of the recently introduced general-model-space (GMS) state-universal (SU) coupled-cluster (CC) method are illustrated on the case of the LiH molecule. Describing the breaking of the Li-H bond by relying on an open-shell-type GMS reveals the importance of the connectivity conditions (C conditions), which represent a crucial new ingredient of the GMS SU CC theory. Only when we properly account for these C conditions can we uniquely represent the full configuration interaction (FCI) wave functions in terms of the multireference SU exponential cluster ansatz and recover the FCI energies via the GMS SU CC method, assuming that all the relevant clusters at a given level of the theory are considered. Drawing on various GMSs, we compute the potential energy curves for three 1Σ+, two 3Σ+, three 1Π, and three 3Π states, using the GMS SU CC method truncated at the singly- and doubly-excited level (GMS SU CCSD), as well as the externally corrected (N,M)-CCSD method that exploits the NR-CISD wave functions as the external source of higher-than-pair clusters in the MR SU CCSD method. In all cases we obtain excellent results: For Σ+ states, the maximum difference between the FCI and various SU CCSD energies is about 0.5 millihartree. These errors are further reduced when we employ the (N,M)-CCSD methods. For the Π states, the deviations of the SU CCSD energies relative to FCI amount to at most a few hundreds of a millihartree. We also report on the size-extensivity tests and the exactness of the formalism for two-electron systems.

  16. Higher-Order Equation-of-Motion Coupled-Cluster Methods

    SciTech Connect

    Hirata, So

    2004-07-01

    The equation-of-motion coupled-cluster (EOM-CC) methods with cluster and linear excitation operators truncated after double, triple, or quadruple excitation level (EOM-CCSD, EOM-CCSDT, and EOM-CCSDTQ) for excitation energies, excited-state dipole moments, and transition moments, and also related Λ equation solvers for coupled-cluster (CC) methods through and up to connected quadruple excitation (CCSD, CCSDT, and CCSDTQ) have been implemented into programs that execute in parallel, taking advantage of spin, spatial (real Abelian), and permutation symmetries simultaneously and fully (within the spin-orbital formalisms). This has been achieved by virtue of the new implementation paradigm of using an algebraic and symbolic manipulation program that automated the formula derivation and implementation altogether. The EOM-CC methods and CC Λ equations introduce a new class of second quantized ansatz with a de-excitation operator ( ), an arbitrary number of excitation operators ( ), and a physical (e.g., the Hamiltonian) operator ( ), the tensor contraction expressions of which can be performed in the order of or at the minimal peak operation cost. Any intermediate tensor resulting from either contraction order is shown to have at most six groups of permutable indices, which finding is used to guide the computer-synthesized programs to fully exploit the permutation symmetry of any tensor to minimize the arithmetic and memory costs.

  17. Revisiting the bound on axion-photon coupling from globular clusters.

    PubMed

    Ayala, Adrian; Domínguez, Inma; Giannotti, Maurizio; Mirizzi, Alessandro; Straniero, Oscar

    2014-11-01

    We derive a strong bound on the axion-photon coupling g(aγ) from the analysis of a sample of 39 Galactic Globular Clusters. As recognized long ago, the R parameter, i.e., the number ratio of stars in horizontal over red giant branch of old stellar clusters, would be reduced by the axion production from photon conversions occurring in stellar cores. In this regard, we have compared the measured R with state-of-the-art stellar models obtained under different assumptions for g(aγ). We show that the estimated value of g(aγ) substantially depends on the adopted He mass fraction Y, an effect often neglected in previous investigations. Taking as a benchmark for our study the most recent determinations of the He abundance in H ii regions with O/H in the same range of the Galactic Globular Clusters, we obtain an upper bound g(aγ)<0.66×10(-10)  GeV(-1) at 95% confidence level. This result significantly improves the constraints from previous analyses and is currently the strongest limit on the axion-photon coupling in a wide mass range. PMID:25415896

  18. Internally contracted multireference coupled-cluster theory in a multistate framework

    NASA Astrophysics Data System (ADS)

    Aoto, Yuri Alexandre; Köhn, Andreas

    2016-02-01

    The internally contracted multireference coupled cluster (icMRCC) theory is reexamined in a multistate framework. The new derivation starts from the Bloch equations employing a wave operator similar to the one originally employed by Jeziorski and Monkhorst [Phys. Rev. A 24, 1668 (1981)], but allows for a multideterminantal model-space basis. The resulting working equations are a generalization of state-universal multireference coupled-cluster (SU-MRCC) theory. In the case of truncated cluster operators, energies and wave functions depend on the choice of the model-space basis. It is shown that the state-specific solutions of the original icMRCC theory exactly diagonalize the effective Hamiltonian of the multistate theory and thus decouple the multistate equations. While this in principle means that icMRCC is a multistate theory, we find that truncated icMRCC theory still shows minor artifacts close to avoided crossings, which can be removed by considering a true multistate ansatz. The results also shed new light on the orbital variance of the original SU-MRCC theory.

  19. Hydrodynamical simulations of coupled and uncoupled quintessence models - II. Galaxy clusters

    NASA Astrophysics Data System (ADS)

    Carlesi, Edoardo; Knebe, Alexander; Lewis, Geraint F.; Yepes, Gustavo

    2014-04-01

    We study the z = 0 properties of clusters (and large groups) of galaxies within the context of interacting and non-interacting quintessence cosmological models, using a series of adiabatic SPH simulations. Initially, we examine the average properties of groups and clusters, quantifying their differences in ΛCold Dark Matter (ΛCDM), uncoupled Dark Energy (uDE) and coupled Dark Energy (cDE) cosmologies. In particular, we focus upon radial profiles of the gas density, temperature and pressure, and we also investigate how the standard hydrodynamic equilibrium hypothesis holds in quintessence cosmologies. While we are able to confirm previous results about the distribution of baryons, we also find that the main discrepancy (with differences up to 20 per cent) can be seen in cluster pressure profiles. We then switch attention to individual structures, mapping each halo in quintessence cosmology to its ΛCDM counterpart. We are able to identify a series of small correlations between the coupling in the dark sector and halo spin, triaxiality and virialization ratio. When looking at spin and virialization of dark matter haloes, we find a weak (5 per cent) but systematic deviation in fifth force scenarios from ΛCDM.

  20. Single scale cluster expansions with applications to many Boson and unbounded spin systems

    NASA Astrophysics Data System (ADS)

    Lohmann, Martin

    2015-06-01

    We develop a cluster expansion to show exponential decay of correlations for quite general single scale spin systems, as they arise in lattice quantum field theory and discretized functional integral representations for observables of quantum statistical mechanics. We apply our results to the small field approximation to the coherent state correlation functions of the grand canonical Bose gas at negative chemical potential, constructed by Balaban et al. [Ann. Henri Poincaré 11, 151-350 (2010c)], and to N component unbounded spin systems with repulsive two body interaction and massive, possibly complex, covariance. Our cluster expansion is derived by a single application of the Brydges-Kennedy-Abdesselam-Rivasseau interpolation formula.

  1. Single scale cluster expansions with applications to many Boson and unbounded spin systems

    SciTech Connect

    Lohmann, Martin

    2015-06-15

    We develop a cluster expansion to show exponential decay of correlations for quite general single scale spin systems, as they arise in lattice quantum field theory and discretized functional integral representations for observables of quantum statistical mechanics. We apply our results to the small field approximation to the coherent state correlation functions of the grand canonical Bose gas at negative chemical potential, constructed by Balaban et al. [Ann. Henri Poincaré 11, 151–350 (2010c)], and to N component unbounded spin systems with repulsive two body interaction and massive, possibly complex, covariance. Our cluster expansion is derived by a single application of the Brydges-Kennedy-Abdesselam-Rivasseau interpolation formula.

  2. Geometry-dependent lifetime of Interatomic coulombic decay using equation-of-motion coupled cluster method

    SciTech Connect

    Ghosh, Aryya; Vaval, Nayana

    2014-12-21

    Electronically excited atom or molecule in an environment can relax via transferring its excess energy to the neighboring atoms or molecules. The process is called Interatomic or Intermolecular coulombic decay (ICD). The ICD is a fast decay process in environment. Generally, the ICD mechanism predominates in weakly bound clusters. In this paper, we have applied the complex absorbing potential approach/equation-of-motion coupled cluster (CAP/EOMCCSD) method which is a combination of CAP and EOMCC approach to study the lifetime of ICD at various geometries of the molecules. We have applied this method to calculate the lifetime of ICD in Ne-X; X = Ne, Mg, Ar, systems. We compare our results with other theoretical and experimental results available in literature.

  3. Single-Electron Transmetalation: An Enabling Technology for Secondary Alkylboron Cross-Coupling

    PubMed Central

    Primer, David N.; Karakaya, Idris; Tellis, John C.; Molander, Gary A.

    2015-01-01

    Single-electron-mediated alkyl transfer affords a novel mechanism for transmetalation, enabling cross-coupling under mild conditions. Here, general conditions are reported for cross-coupling of secondary alkyltrifluoroborates with an array of aryl bromides mediated by an Ir photoredox catalyst and a Ni cross-coupling catalyst. PMID:25650892

  4. Coupled cluster calculations of mean excitation energies of the noble gas atoms He, Ne and Ar and of the H2 molecule

    NASA Astrophysics Data System (ADS)

    Sauer, Stephan P. A.; Haq, Inam Ul; Sabin, John R.; Oddershede, Jens; Christiansen, Ove; Coriani, Sonia

    2014-03-01

    Using an asymmetric Lanczos chain algorithm for the calculation of the coupled cluster linear response functions at the coupled cluster singles and doubles (CCSD) and coupled cluster singles and approximate iterative doubles (CC2) levels of approximation, we have calculated the mean excitation energies of the noble gases He, Ne and Ar, and of the hydrogen molecule (H2). Convergence with respect to the one-electron basis set was investigated in detail for families of correlation-consistent basis sets including both augmentation and core-valence functions. We find that the electron correlation effects at the CCSD level change the mean excitation energies obtained at the uncorrelated Hartree-Fock level by about 1%. For the two-electron systems He and H2, our CCSD results (for a Lanczos chain length equal to the full excitation space), I0 = 42.28 eV (helium) and I0 = 19.62 eV (H2), correspond to full configuration interaction results and are therefore the exact, non-relativistic theoretical values for the mean excitation energy of these two systems within the Bethe theory for the chosen basis set and, in the case of H2, at the experimental equilibrium geometry.

  5. Formulation and implementation of a unitary group adapted state universal multi-reference coupled cluster (UGA-SUMRCC) theory: Excited and ionized state energies

    NASA Astrophysics Data System (ADS)

    Sen, Sangita; Shee, Avijit; Mukherjee, Debashis

    2012-08-01

    The traditional state universal multi-reference coupled cluster (SUMRCC) theory uses the Jeziorski-Monkhorst (JM) based Ansatz of the wave operator: Ω = ∑μΩμ|ϕμ⟩⟨ϕμ|, where Ωμ = exp (Tμ) is the cluster representation of the component of Ω inducing virtual excitations from the model function ϕμ. In the first formulations, ϕμs were chosen to be single determinants and Tμs were defined in terms of spinorbitals. This leads to spin-contamination for the non-singlet cases. In this paper, we propose and implement an explicitly spin-free realization of the SUMRCC theory. This method uses spin-free unitary generators in defining the cluster operators, {Tμ}, which even at singles-doubles truncation, generates non-commuting cluster operators. We propose the use of normal-ordered exponential parameterization for Ω:∑μ{exp (Tμ)}|ϕμ⟩⟨ϕμ|, where {} denotes the normal ordering with respect to a common closed shell vacuum which makes the "direct term" of the SUMRCC equations terminate at the quartic power. We choose our model functions {ϕμ} as unitary group adapted (UGA) Gel'fand states which is why we call our theory UGA-SUMRCC. In the spirit of the original SUMRCC, we choose exactly the right number of linearly independent cluster operators in {Tμ} such that no redundancies in the virtual functions lbrace χ _μ ^lrbrace are involved. Using example applications for electron detached/attached and h-p excited states relative to a closed shell ground state we discuss how to choose the most compact and non-redundant cluster operators. Although there exists a more elaborate spin-adapted JM-like ansatz of Datta and Mukherjee (known as combinatoric open-shell CC (COS-CC), its working equations are more complex. Results are compared with those from COS-CC, equation of motion coupled cluster methods, restricted open-shell Hartree-Fock coupled cluster, and full configuration interaction. We observe that our results are more accurate with respect to

  6. Finite temperature vibronic spectra of harmonic surfaces: a time-dependent coupled cluster approach

    NASA Astrophysics Data System (ADS)

    Sridhar Reddy, Ch.; Durga Prasad, M.

    2015-10-01

    An algorithm to compute vibronic spectra of harmonic surfaces including Dushinsky rotation and Hertzberg-Teller terms is described. The method, inspired by thermo field dynamics, maps the thermal density matrix onto the vacuum state and uses the time-dependent coupled cluster ansatz to propagate it in time. In the Franck-Condon approximation where the dipole matrix elements are taken to be constants, this reduces to the auto correlation function of the new vacuum. In the Hertzberg-Teller approximation, the full time evolution operator is needed. This too is governed by a closed set of equations. The theoretical development is presented along with an application to anthracene.

  7. Reduced-cost sparsity-exploiting algorithm for solving coupled-cluster equations.

    PubMed

    Brabec, Jiri; Yang, Chao; Epifanovsky, Evgeny; Krylov, Anna I; Ng, Esmond

    2016-05-01

    We present an algorithm for reducing the computational work involved in coupled-cluster (CC) calculations by sparsifying the amplitude correction within a CC amplitude update procedure. We provide a theoretical justification for this approach, which is based on the convergence theory of inexact Newton iterations. We demonstrate by numerical examples that, in the simplest case of the CCD equations, we can sparsify the amplitude correction by setting, on average, roughly 90% nonzero elements to zeros without a major effect on the convergence of the inexact Newton iterations. PMID:26804120

  8. Coupled-cluster theory computation of the nuclear electric dipole polarizability

    NASA Astrophysics Data System (ADS)

    Bacca, Sonia; Miorelli, Mirko; Barnea, Nir; Hagen, Gaute; Orlandini, Giuseppina; Papenbrock, Thomas

    2016-03-01

    The electric dipole polarizability αD is strongly correlated with the size of atomic nuclei. It informs us about the neutron equation of state and links atomic nuclei to neutron stars. In recent years, scattering experiments have been used to determine the dipole polarizability in 208Pb, 120Sn and 68Ni. Combining the Lorentz integral transform with the coupled-cluster method allows us to perform ab initio computations of αD for medium mass nuclei. In Ref. we predicted the polarizability for 48Ca and presently we are investigating heavier systems such as 68Ni and 90Zn.

  9. Coupled-cluster interpretation of the photoelectron spectrum of Ag3 (.).

    PubMed

    Bauman, Nicholas P; Hansen, Jared A; Piecuch, Piotr

    2016-08-28

    We use the scalar relativistic ionized equation-of-motion coupled-cluster (IP-EOMCC) approaches to investigate the photoelectron spectrum of Ag3 (-), examining the effects of basis set, number of correlated electrons, level of applied theory including up to 3-hole-2-particle terms, and geometry relaxation. By employing an IP-EOMCC-based extrapolation scheme, we are able to provide an accurate interpretation and complete assignment of peaks and other key features in the experimentally observed spectra, including electron binding energies as high as about 6.5 eV. PMID:27586921

  10. What Is A Globular Cluster? Discovery Of An Old, Massive, Star Cluster With A Single Stellar Population

    NASA Astrophysics Data System (ADS)

    Geisler, Douglas; Villanova, S.

    2012-05-01

    Globular Clusters (GCs), long considered as ideal Single Stellar Populations, are now known to harbor a wide variety of chemical inhomogeneities. In particular, Carretta et al. (2009) showed that all GCs studied to date have at least a spread (or anticorrelation) in the light-elements O and Na. Indeed, they suggest a new definition of a GC as a cluster which exhibits such an anticorrelation, with the implication that all GCs, at least those above a certain mass limit, must posses this characteristic. The explanation is that GCs had at least two epochs of star formation and thus two generations of stars, where the second was formed from gas polluted by processed material produced by massive stars of the first. This multiplicity can only happen if the initial cluster mass exceeds a threshold above which stellar ejecta are retained and eventually a second generation is formed. A determination of this mass-threshold is mandatory in order to understand how GCs form. However, no convincing case of a single population GC has so far been found. We present a detailed abundance analysis of a large sample of stars from the ''GC" Ruprecht 106 observed with UVES@VLT2. We show that Ruprecht 106 is the first convincing example of a true single population ''GC". It is old (12 Gyrs) and, at odds with other GCs, has no alpha-element enhancement and a much lower C+N+O content. The abundance pattern points toward an extragalactic origin. Its present day mass can be assumed as a lower limit for the initial mass threshold below which no second generation is formed.

  11. Nested Variant of the Method of Moments of Coupled Cluster Equations for Vertical Excitation Energies and Excited-state Potential Energy Surfaces

    SciTech Connect

    Kowalski, Karol

    2009-05-21

    In this article we discuss a problem of proper balancing of the non-iterative corrections to the ground- and excited-state energies obtained with approximate coupled cluster (CC) and Equation-of-Motion CC (EOMCC) approaches. It is demonstrated that for a class of excited states dominated by single excitations and for states with medium doubly excited component the newly introduced embedded variant of the Method of Moments of Coupled Cluster equations provides mathematically rigorous way of balancing the ground- and excited-state correlation effects. The resulting noniterative methodology accounting for the effect of triples (Em-EOMCCSD(T)) is tested using its parallel implementation on the systems for which iterative CC/EOMCC calculations with full inclusion of triply excited configurations or their most important subset is numerically feasible.

  12. Cooperative lifetime reduction of single acene molecules attached to the surface of neon clusters

    NASA Astrophysics Data System (ADS)

    Müller, Markus; Izadnia, Sharareh; Vlaming, Sebastiaan M.; Eisfeld, Alexander; LaForge, Aaron; Stienkemeier, Frank

    2015-09-01

    Tetracene and pentacene molecules attached to the surface of neon clusters have been spectroscopically investigated. The fluorescence spectra indicate that the molecules are immobilized on the surface and, to a large extent, do not form complexes. By varying the number of attached molecules, laser power, or neon cluster size, we find a systematic fluorescence lifetime reduction up to a factor of 20 indicating a cooperative coupling in our system. For averaged intermolecular distances greater than 33 Å, we attribute the reduction in fluorescence lifetime to Dicke superradiance, while for smaller intermolecular distances, nonradiative decay mechanisms cause additional lifetime reduction.

  13. Higher-order equation-of-motion coupled-cluster methods for electron attachment

    NASA Astrophysics Data System (ADS)

    Kamiya, Muneaki; Hirata, So

    2007-04-01

    High-order equation-of-motion coupled-cluster methods for electron attachment (EA-EOM-CC) have been implemented with the aid of the symbolic algebra program TCE into parallel computer programs. Two types of size-extensive truncation have been applied to the electron-attachment and cluster excitation operators: (1) the electron-attachment operator truncated after the 2p-1h, 3p-2h, or 4p-3h level in combination with the cluster excitation operator after doubles, triples, or quadruples, respectively, defining EA-EOM-CCSD, EA-EOM-CCSDT, or EA-EOM-CCSDTQ; (2) the combination of up to the 3p-2h electron-attachment operator and up to the double cluster excitation operator [EA-EOM-CCSD(3p-2h)] or up to 4p-3h and triples [EA-EOM-CCSDT(4p-3h)]. These methods, capable of handling electron attachment to open-shell molecules, have been applied to the electron affinities of NH and C2, the excitation energies of CH, and the spectroscopic constants of all these molecules with the errors due to basis sets of finite sizes removed by extrapolation. The differences in the electron affinities or excitation energies between EA-EOM-CCSD and experiment are frequently in excess of 2eV for these molecules, which have severe multideterminant wave functions. Including higher-order operators, the EA-EOM-CC methods predict these quantities accurate to within 0.01eV of experimental values. In particular, the 3p-2h electron-attachment and triple cluster excitation operators are significant for achieving this accuracy.

  14. Higher-order equation-of-motion coupled-cluster methods for electron attachment.

    PubMed

    Kamiya, Muneaki; Hirata, So

    2007-04-01

    High-order equation-of-motion coupled-cluster methods for electron attachment (EA-EOM-CC) have been implemented with the aid of the symbolic algebra program TCE into parallel computer programs. Two types of size-extensive truncation have been applied to the electron-attachment and cluster excitation operators: (1) the electron-attachment operator truncated after the 2p-1h, 3p-2h, or 4p-3h level in combination with the cluster excitation operator after doubles, triples, or quadruples, respectively, defining EA-EOM-CCSD, EA-EOM-CCSDT, or EA-EOM-CCSDTQ; (2) the combination of up to the 3p-2h electron-attachment operator and up to the double cluster excitation operator [EA-EOM-CCSD(3p-2h)] or up to 4p-3h and triples [EA-EOM-CCSDT(4p-3h)]. These methods, capable of handling electron attachment to open-shell molecules, have been applied to the electron affinities of NH and C2, the excitation energies of CH, and the spectroscopic constants of all these molecules with the errors due to basis sets of finite sizes removed by extrapolation. The differences in the electron affinities or excitation energies between EA-EOM-CCSD and experiment are frequently in excess of 2 eV for these molecules, which have severe multideterminant wave functions. Including higher-order operators, the EA-EOM-CC methods predict these quantities accurate to within 0.01 eV of experimental values. In particular, the 3p-2h electron-attachment and triple cluster excitation operators are significant for achieving this accuracy. PMID:17430021

  15. Communication: Relativistic Fock-space coupled cluster study of small building blocks of larger uranium complexes

    SciTech Connect

    Tecmer, Paweł Visscher, Lucas; Severo Pereira Gomes, André; Knecht, Stefan

    2014-07-28

    We present a study of the electronic structure of the [UO{sub 2}]{sup +}, [UO{sub 2}]{sup 2} {sup +}, [UO{sub 2}]{sup 3} {sup +}, NUO, [NUO]{sup +}, [NUO]{sup 2} {sup +}, [NUN]{sup −}, NUN, and [NUN]{sup +} molecules with the intermediate Hamiltonian Fock-space coupled cluster method. The accuracy of mean-field approaches based on the eXact-2-Component Hamiltonian to incorporate spin–orbit coupling and Gaunt interactions are compared to results obtained with the Dirac–Coulomb Hamiltonian. Furthermore, we assess the reliability of calculations employing approximate density functionals in describing electronic spectra and quantities useful in rationalizing Uranium (VI) species reactivity (hardness, electronegativity, and electrophilicity)

  16. Comparison of the quadratic configuration interaction and coupled cluster approaches to electron correlation including the effect of triple excitations

    NASA Technical Reports Server (NTRS)

    Taylor, Peter R.; Lee, Timothy J.; Rendell, Alistair P.

    1990-01-01

    The recently proposed quadratic configuration interaction (QCI) method is compared with the more rigorous coupled cluster (CC) approach for a variety of chemical systems. Some of these systems are well represented by a single-determinant reference function and others are not. The finite order singles and doubles correlation energy, the perturbational triples correlation energy, and a recently devised diagnostic for estimating the importance of multireference effects are considered. The spectroscopic constants of CuH, the equilibrium structure of cis-(NO)2 and the binding energies of Be3, Be4, Mg3, and Mg4 were calculated using both approaches. The diagnostic for estimating multireference character clearly demonstrates that the QCI method becomes less satisfactory than the CC approach as non-dynamical correlation becomes more important, in agreement with a perturbational analysis of the two methods and the numerical estimates of the triple excitation energies they yield. The results for CuH show that the differences between the two methods become more apparent as the chemical systems under investigation becomes more multireference in nature and the QCI results consequently become less reliable. Nonetheless, when the system of interest is dominated by a single reference determinant both QCI and CC give very similar results.

  17. Sub-10 nm nano-gap device for single-cluster transport measurements

    SciTech Connect

    Rousseau, J. Morel, R.; Vila, L.; Brenac, A.; Marty, A.; Notin, L.; Beigné, C.

    2014-02-17

    We present a versatile procedure for the fabrication of single electron transistor (SET) devices with nanometer-sized clusters and embedded back gate electrode. The process uses sputtering gas-aggregation for the growth of clusters and e-beam lithography with double angle shadow-edge deposition to obtain electrodes separated by nano-gaps with width below 10 nm. The nano-gap width is easily controlled only by geometrical factors such as deposited thin film thickness and evaporation angles. The usefulness of this technique is demonstrated by measuring the SET behavior of a device with a 4 nm cobalt cluster embedded in alumina, where the Coulomb blockade and incremental cluster charging can be readily identified without resorting to the differential conductivity.

  18. The effects of unsteady aerodynamics on single and clustered parachute systems

    SciTech Connect

    Waye, D.E.; Johnson, D.W.

    1989-01-01

    A study was performed to evaluate the performance of equivalent drag area single parachute systems and cluster parachute systems during the early inflation and initial deceleration phase. Analytical work showed that the cluster system could exhibit better performance during this unsteady aerodynamic phase due to a significant decrease in the apparent mass of air influenced by the parachutes. Two test programs have been performed in support of these assumptions. The first compared systems with parachute drag areas of approximately 750 ft/sup 2/ and a payload of 2400 lbs. The cluster system exhibited increased performance and less susceptibility to parachute collapse due to wake recontact. The second series compared systems with parachute drag areas of approximately 260 ft/sup 2/ with a payload of 800 lbs. The advantages of the cluster system were less apparent but performance was moderately improved. 4 refs., 7 figs.

  19. Efficient single-mode photon-coupling device utilizing a nanofiber tip.

    PubMed

    Chonan, Sho; Kato, Shinya; Aoki, Takao

    2014-01-01

    Single-photon sources are important elements in quantum optics and quantum information science. It is crucial that such sources be able to couple photons emitted from a single quantum emitter to a single propagating mode, preferably to the guided mode of a single-mode optical fiber, with high efficiency. Various photonic devices have been successfully demonstrated to efficiently couple photons from an emitter to a single mode of a cavity or a waveguide. However, efficient coupling of these devices to optical fibers is sometimes challenging. Here we show that up to 38% of photons from an emitter can be directly coupled to a single-mode optical fiber by utilizing the flat tip of a silica nanofiber. With the aid of a metallic mirror, the efficiency can be increased to 76%. The use of a silicon waveguide further increases the efficiency to 87%. This simple device can be applied to various quantum emitters. PMID:24759303

  20. Linear coupled-cluster method. II. Analysis of local exchange-correlation potentials in beryllium and its isoelectronic series

    NASA Astrophysics Data System (ADS)

    Shankar, S.; Narasimhan, P. T.

    1984-01-01

    The Slater Xα method and its local-potential modifications are examined with reference to the many-electron exchange-correlation effects in the beryllium atom and its isoelectronic series. The linear coupled-cluster method and a hierarchy of approximations to it are employed for this purpose. The role of the exchange parameter α in providing an accurate description of the exchange-correlation effects is analyzed in the light of the electron-gas model. It is found that for Be atoms an α value of 0.768, that which causes the local potential to mimic the Hartree-Fock potential, is the best suited reference state for many-body calculations. The impact of the.α variation on the exchange-correlation corrections in the Be isoelectronic series is assessed. With increase in the nuclear charge Z, exchange-correlation corrections favor the use of α values closer to 23, the Gaspar-Kohn-Sham limit, in the Xα model. The instabilities in the cluster equations induced by ringdiagram terms are also noted. The futility of using gradient corrections to the Xα model to account for exchange-correlation effects is brought out in the calculations. It is found that a simple scaling of the electron-gas potential results in excellent single-particle reference states for many-body calculations.

  1. Cluster VS. Single-Spin ALGORITHMS—WHICH are More Efficient?

    NASA Astrophysics Data System (ADS)

    Ito, N.; Kohring, G. A.

    A comparison between single-cluster and single-spin algorithms is made for the Ising model in 2 and 3 dimensions. We compare the amount of computer time needed to achieve a given level of statistical accuracy, rather than the speed in terms of site updates per second or the dynamical critical exponents. Our main result is that the cluster algorithms become more efficient when the system size, Ld, exceeds, L~70-300 for d=2 and l~80-200 for d=3. The exact value of the crossover is dependent upon the computer being used. The lower end of the crossover range is typical of workstations while the higher end is typical of vector computers. Hence, even for workstations, the system sizes needed for efficient use of the cluster algorithm is relatively large.

  2. Ab Initio Coupled-Cluster Approach to Nuclear Structure with Modern Nucleon-Nucleon Interactions

    SciTech Connect

    Hagen, Gaute; Papenbrock, T.; Dean, David Jarvis; Hjorth-Jensen, M.

    2010-01-01

    We perform coupled-cluster calculations for the doubly magic nuclei ^{4}He, ^{16}O, and ^{40,48}Ca for neutron-rich isotopes of oxygen and fluorine, and employ "bare" and secondary renormalized nucleon-nucleon interactions. For the nucleon-nucleon interaction from chiral effective field theory at order next-to-next-to-next-to leading order, we find that the coupled-cluster approximation including triples corrections binds nuclei within 0.4 MeV per nucleon compared to data. We employ interactions from a resolution-scale dependent similarity renormalization group transformation and assess the validity of power-counting estimates in medium-mass nuclei. We find that the missing contributions due to three-nucleon forces are consistent with these estimates. For the unitary correlator model potential, we find a slow convergence with respect to increasing the size of the model space. For the G-matrix approach, we find a weak dependence of ground-state energies on the starting energy combined with a rather slow convergence with respect to increasing model spaces. We also analyze the center-of-mass problem and present a practical and efficient solution.

  3. Correlated R-matrix theory of electron scattering: A coupled-cluster approach

    NASA Astrophysics Data System (ADS)

    Sur, Chiranjib; Pradhan, Anil; Sadayappan, P.

    2007-06-01

    Study of electron scattering from heavy atoms/ions not only demands high speed computing machines but also improved theoretical descriptions of the relativistic and correlation effects for the target atoms/ions as well. We will give an outline of the coupled-cluster R-matrix (CCRM) theory to incorporate the effect of electron correlation through coupled-cluster theory (CCT), the size extensive and one of the most accurate many body theories which is equivalant to an all-order many-body perturbation theory (MBPT). General theoretical formulation of CCRM and the computational implementation using the high level Mathematica style language compiler known as Tensor Contraction Engine (TCE) will be presented. Electronic structure calculations using CCT involve large collections of tensor contractions (generalized matrix multiplications). TCE searches for an optimal implementation of these tensor contraction expressions and generates high performance FORTRAN code for CCT. We will also comment on the interfacing of TCE generated code with the Breit-Pauli R-matrix code to make a next generation CCRM software package. This theoretical formulation and the new sets of codes can be used to study electron scattering / photoionization in heavy atomic systems where relativistic and electron correlation effects are very important.

  4. A systematic approach to vertically excited states of ethylene using configuration interaction and coupled cluster techniques

    SciTech Connect

    Feller, David Peterson, Kirk A.; Davidson, Ernest R.

    2014-09-14

    A systematic sequence of configuration interaction and coupled cluster calculations were used to describe selected low-lying singlet and triplet vertically excited states of ethylene with the goal of approaching the all electron, full configuration interaction/complete basis set limit. Included among these is the notoriously difficult, mixed valence/Rydberg {sup 1}B{sub 1u} V state. Techniques included complete active space and iterative natural orbital configuration interaction with large reference spaces which led to variational spaces of 1.8 × 10{sup 9} parameters. Care was taken to avoid unintentionally biasing the results due to the widely recognized sensitivity of the V state to the details of the calculation. The lowest vertical and adiabatic ionization potentials to the {sup 2}B{sub 3u} and {sup 2}B{sub 3} states were also determined. In addition, the heat of formation of twisted ethylene {sup 3}A{sub 1} was obtained from large basis set coupled cluster theory calculations including corrections for core/valence, scalar relativistic and higher order correlation recovery.

  5. Relativistic coupled-cluster calculation of the electron-nucleus scalar-pseudoscalar interaction constant Ws in YbF

    NASA Astrophysics Data System (ADS)

    Sunaga, A.; Abe, M.; Hada, M.; Das, B. P.

    2016-04-01

    The scalar-pseudoscalar (S-PS) interaction, which has been predicted between the electrons and nuclei of atoms and molecules, violates parity- (P -) and time- (T -) reversal symmetries. The electric dipole moment of the electron (eEDM) and the S-PS interaction together give rise to an energy shift in paramagnetic polar molecules, which in principle can be measured. The determination of the S-PS interaction constant, ks ,A, for an atom A could be a sensitive probe of physics beyond the standard model. The upper limit for it can be obtained by combining the results of the measured energy shift mentioned above and the accurate quantum chemical calculation of the S-PS coefficient, Ws ,A. In this work, we use a method based on the four-component relativistic coupled-cluster singles and doubles (RCCSD) method to calculate this coefficient for YbF, one of the most promising candidates for the search of the eEDM and the S-PS interaction. We obtain Ws ,Yb=-40.5 (kHz ) with an estimated error of less than 10% for YbF. We also calculate the effective electric field (Eeff), the molecular dipole moment, and the parallel component of the hyperfine coupling constant (A∥) by the RCCSD method. The discrepancies in the results of these calculations with those of accurate measurements are used to estimate the accuracy of our calculation of Ws ,Yb.

  6. Detection of single unit activity from the rat vagus using cluster analysis of principal components.

    PubMed

    Horn, Charles C; Friedman, Mark I

    2003-01-30

    In vivo recordings from subdiaphragmatic vagal afferent nerves generally lack the resolution to distinguish single unit activity. Several methods for data acquisition and analysis were combined to produce a high degree of reliability in recording electrophysiological signals from gastrointestinal and hepatic afferent fibers in the rat. Recordings with low noise were achieved by paralysis of the respiratory muscles and by pinning the nerve to a recording platform. Single unit activity was isolated using principal component (PC) analysis and cluster cutting of data in multi-dimensional space (1-3 PCs). Cluster assignments were determined by a semi-automated approach using the k-means algorithm. The accuracy of single unit classification was assessed by checking inter-spike intervals (ISIs) to determine the length of the refractory period, and by cross-correlation analysis to assess whether single units were mistakenly split into more than one cluster. These analyses produced up to four isolated single units from each nerve filament (a bundle of nerve fibers), and typically it was possible to further increase yield by recording from several nerve filaments simultaneously using an array of electrodes. PMID:12573473

  7. Novel Application of Cluster Analysis to Transport Data in Single Molecule Break Junctions

    NASA Astrophysics Data System (ADS)

    Wu, Ben; Ivie, Jeffrey; Johnson, Tyler; Himmelhuber, Roland; Monti, Oliver

    Single molecule based devices represent the ultimate limit in device design, but uncovering the major factors that determine energy level alignment in single molecule junctions and their effect on the charge transport properties of single molecules is still a major challenge. Analysis of break junction data using a novel density based hierarchical clustering algorithm reveals the deep structure of the highly stochastic data that will help hypothesis-driven elucidation of some of the key parameters for quantum transport. The strength of this approach is its scale-invariance and the identification of nested structure that may be overlooked by standard data analysis techniques. The statistical relevance of identified clusters can be gauged using a density based validation index. Arnold and Mabel Beckman Foundation.

  8. Clustered quantum dots in single GaN islands formed at threading dislocations

    NASA Astrophysics Data System (ADS)

    Schmidt, Gordon; Veit, Peter; Berger, Christoph; Bertram, Frank; Dadgar, Armin; Strittmatter, André; Christen, Jürgen

    2016-05-01

    We give direct evidence of distinct quantum dot states clustered but also spatially separated in single GaN islands. Resulting from GaN layer growth on top of AlN, the islands are predominantly formed in close vicinity to threading dislocation bundles. Detailed analysis of the inner optical and structural properties, performed by nanoscale cathodoluminescence, reveals various sharp quantum dot emission lines from different regions in an otherwise continuous island. Thickness fluctuations found within these islands are made responsible for the clustering of quantum dot states.

  9. Cyclic single-molecule magnets: from the odd-numbered heptanuclear to a dimer of heptanuclear dysprosium clusters.

    PubMed

    Tian, Haiquan; Bao, Song-Song; Zheng, Li-Min

    2016-02-01

    A heptanuclear and a dimer of heptanuclear dysprosium clusters (Dy7 and Dy14) have been successfully synthesized by ingenious coalescence of the single and double pyrazinyl hydrazone as well as phosphonate ligands. The complexes feature the largest odd-numbered cyclic lanthanide clusters reported thus far. Both exhibit single molecule magnet behaviors at low temperature. PMID:26728975

  10. Characterization of a Single Genomic Locus Encoding the Clustered Protocadherin Receptor Diversity in Xenopus tropicalis

    PubMed Central

    Etlioglu, Hakki E.; Sun, Wei; Huang, Zengjin; Chen, Wei; Schmucker, Dietmar

    2016-01-01

    Clustered protocadherins (cPcdhs) constitute the largest subgroup of the cadherin superfamily, and in mammals are grouped into clusters of α-, β-, and γ-types. Tens of tandemly arranged paralogous Pcdh genes of the Pcdh clusters generate a substantial diversity of receptor isoforms. cPcdhs are known to have important roles in neuronal development, and genetic alterations of cPcdhs have been found to be associated with several neurological diseases. Here, we present a first characterization of cPcdhs in Xenopus tropicalis. We determined and annotated all cPcdh isoforms, revealing that they are present in a single chromosomal locus. We validated a total of 96 isoforms, which we show are organized in three distinct clusters. The X. tropicalis cPcdh locus is composed of one α- and two distinct γ-Pcdh clusters (pcdh-γ1 and pcdh-γ2). Bioinformatics analyses assisted by genomic BAC clone sequencing showed that the X. tropicalis α- and γ-Pcdhs are conserved at the cluster level, but, unlike mammals, X. tropicalis does not contain a β-Pcdh cluster. In contrast, the number of γ-Pcdh isoforms has expanded, possibly due to lineage-specific gene duplications. Interestingly, the number of X. tropicalis α-Pcdhs is identical between X. tropicalis and mouse. Moreover, we find highly conserved as well as novel promoter elements potentially involved in regulating the cluster-specific expression of cPcdh isoforms. This study provides important information for the understanding of the evolutionary history of cPcdh genes and future mechanistic studies. It provides an annotated X. tropicalis cPcdh genomic map and a first molecular characterization essential for functional and comparative studies. PMID:27261006

  11. Characterization of a Single Genomic Locus Encoding the Clustered Protocadherin Receptor Diversity in Xenopus tropicalis.

    PubMed

    Etlioglu, Hakki E; Sun, Wei; Huang, Zengjin; Chen, Wei; Schmucker, Dietmar

    2016-01-01

    Clustered protocadherins (cPcdhs) constitute the largest subgroup of the cadherin superfamily, and in mammals are grouped into clusters of α-, β-, and γ-types. Tens of tandemly arranged paralogous Pcdh genes of the Pcdh clusters generate a substantial diversity of receptor isoforms. cPcdhs are known to have important roles in neuronal development, and genetic alterations of cPcdhs have been found to be associated with several neurological diseases. Here, we present a first characterization of cPcdhs in Xenopus tropicalis We determined and annotated all cPcdh isoforms, revealing that they are present in a single chromosomal locus. We validated a total of 96 isoforms, which we show are organized in three distinct clusters. The X. tropicalis cPcdh locus is composed of one α- and two distinct γ-Pcdh clusters (pcdh-γ1 and pcdh-γ2). Bioinformatics analyses assisted by genomic BAC clone sequencing showed that the X. tropicalis α- and γ-Pcdhs are conserved at the cluster level, but, unlike mammals, X. tropicalis does not contain a β-Pcdh cluster. In contrast, the number of γ-Pcdh isoforms has expanded, possibly due to lineage-specific gene duplications. Interestingly, the number of X. tropicalis α-Pcdhs is identical between X. tropicalis and mouse. Moreover, we find highly conserved as well as novel promoter elements potentially involved in regulating the cluster-specific expression of cPcdh isoforms. This study provides important information for the understanding of the evolutionary history of cPcdh genes and future mechanistic studies. It provides an annotated X. tropicalis cPcdh genomic map and a first molecular characterization essential for functional and comparative studies. PMID:27261006

  12. Molecular response properties in equation of motion coupled cluster theory: A time-dependent perspective

    NASA Astrophysics Data System (ADS)

    Coriani, Sonia; Pawłowski, Filip; Olsen, Jeppe; Jørgensen, Poul

    2016-01-01

    Molecular response properties for ground and excited states and for transitions between these states are defined by solving the time-dependent Schrödinger equation for a molecular system in a field of a time-periodic perturbation. In equation of motion coupled cluster (EOM-CC) theory, molecular response properties are commonly obtained by replacing, in configuration interaction (CI) molecular response property expressions, the energies and eigenstates of the CI eigenvalue equation with the energies and eigenstates of the EOM-CC eigenvalue equation. We show here that EOM-CC molecular response properties are identical to the molecular response properties that are obtained in the coupled cluster-configuration interaction (CC-CI) model, where the time-dependent Schrödinger equation is solved using an exponential (coupled cluster) parametrization to describe the unperturbed system and a linear (configuration interaction) parametrization to describe the time evolution of the unperturbed system. The equivalence between EOM-CC and CC-CI molecular response properties only holds when the CI molecular response property expressions—from which the EOM-CC expressions are derived—are determined using projection and not using the variational principle. In a previous article [F. Pawłowski, J. Olsen, and P. Jørgensen, J. Chem. Phys. 142, 114109 (2015)], it was stated that the equivalence between EOM-CC and CC-CI molecular response properties only held for a linear response function, whereas quadratic and higher order response functions were mistakenly said to differ in the two approaches. Proving the general equivalence between EOM-CC and CC-CI molecular response properties is a challenging task, that is undertaken in this article. Proving this equivalence not only corrects the previous incorrect statement but also first and foremost leads to a new, time-dependent, perspective for understanding the basic assumptions on which the EOM-CC molecular response property expressions

  13. Molecular response properties in equation of motion coupled cluster theory: A time-dependent perspective.

    PubMed

    Coriani, Sonia; Pawłowski, Filip; Olsen, Jeppe; Jørgensen, Poul

    2016-01-14

    Molecular response properties for ground and excited states and for transitions between these states are defined by solving the time-dependent Schrödinger equation for a molecular system in a field of a time-periodic perturbation. In equation of motion coupled cluster (EOM-CC) theory, molecular response properties are commonly obtained by replacing, in configuration interaction (CI) molecular response property expressions, the energies and eigenstates of the CI eigenvalue equation with the energies and eigenstates of the EOM-CC eigenvalue equation. We show here that EOM-CC molecular response properties are identical to the molecular response properties that are obtained in the coupled cluster-configuration interaction (CC-CI) model, where the time-dependent Schrödinger equation is solved using an exponential (coupled cluster) parametrization to describe the unperturbed system and a linear (configuration interaction) parametrization to describe the time evolution of the unperturbed system. The equivalence between EOM-CC and CC-CI molecular response properties only holds when the CI molecular response property expressions-from which the EOM-CC expressions are derived-are determined using projection and not using the variational principle. In a previous article [F. Pawłowski, J. Olsen, and P. Jørgensen, J. Chem. Phys. 142, 114109 (2015)], it was stated that the equivalence between EOM-CC and CC-CI molecular response properties only held for a linear response function, whereas quadratic and higher order response functions were mistakenly said to differ in the two approaches. Proving the general equivalence between EOM-CC and CC-CI molecular response properties is a challenging task, that is undertaken in this article. Proving this equivalence not only corrects the previous incorrect statement but also first and foremost leads to a new, time-dependent, perspective for understanding the basic assumptions on which the EOM-CC molecular response property expressions are

  14. Coupling of DBR tapered diode laser radiation into a single-mode-fiber at high powers

    NASA Astrophysics Data System (ADS)

    Jedrzejczyk, D.; Asbahr, P.; Pulka, M.; Eppich, B.; Paschke, K.

    2014-03-01

    In this work, we investigate experimentally coupling of diode laser radiation into a single-mode-fiber (SMF) at high optical power. In particular, nearly diffraction-limited, single-frequency continuous wave (CW) radiation around 1064 nm generated by a distributed Bragg reflector (DBR) tapered diode laser is coupled in a bench-top experiment into an SMF with a core diameter of approx. 6 μm. Misalignment tolerances for efficient SMF coupling are determined through two-dimensional coupling efficiency scans, conducted for an attenuated diode laser beam. The coupling efficiency and the laser beam properties behind the SMF are investigated in dependence on the optical power in front of the SMF. A maximum power ex fiber of 3.5 W at a coupling efficiency of 65 % is reached.

  15. Rotationally induced magnetic chirality in clusters of single-domain permalloy islands and gapped nanorings

    NASA Astrophysics Data System (ADS)

    Zhang, Sheng; Li, Jie; Bartell, Jason; Lammert, Paul; Crespi, Vincent; Schiffer, Peter

    2011-03-01

    We have studied magnetic moment configurations of clusters of single-domain ferromagnetic islands in different geometries. The magnetic moments of these clusters are imaged by MFM after rotational demagnetization, following our previous protocols. We observed that two types of the clusters showed a significant imbalance of their two-fold degenerate ground states after demagnetization, and this inequality is correlated to the rotational direction of the demagnetization. A similar imbalance was also found in nano-scale rings with a small gap: the chirality of their magnetic state can be precisely controlled by the rotational direction during demagnetization. We acknowledge the financial support from DOE and Army Research Office. We are grateful to Prof. Chris Leighton and Mike Erickson for assistance with sample preparation.

  16. The spin-free analogue of Mukherjee's state-specific multireference coupled cluster theory

    NASA Astrophysics Data System (ADS)

    Datta, Dipayan; Mukherjee, Debashis

    2011-02-01

    In this paper, we develop a rigorously spin-adapted version of Mukherjee's state-specific multireference coupled cluster theory (SS-MRCC, also known as Mk-MRCC) [U. S. Mahapatra, B. Datta, and D. Mukherjee, J. Chem. Phys. 110, 6171 (1999)] for reference spaces comprising open-shell configurations. The principal features of our approach are as follows: (1) The wave operator Ω is written as Ω = ∑μΩμ|ϕμ>cμ, where {ϕμ} is the set of configuration state functions spanning a complete active space. (2) In contrast to the Jeziorski-Monkhorst Ansatz in spin-orbital basis, we write Ωμ as a power series expansion of cluster operators Rμ defined in terms of spin-free unitary generators. (3) The operators Rμ are either closed-shell-like n hole-n particle excitations (denoted as Tμ) or they involve valence (active) destruction operators (denoted as Sμ); these latter type of operators can have active-active scatterings, which can also carry the same active orbital labels (such Sμ's are called to have spectator excitations). (4) To simulate multiple excitations involving powers of cluster operators, we allow the Sμ's carrying the same active orbital labels to contract among themselves. (5) We exclude Sμ's with direct spectator scatterings. (6) Most crucially, the factors associated with contracted composites are chosen as the inverse of the number of ways the Sμ's can be joined among one another leading to the same excitation. The factors introduced in (6) have been called the automorphic factors by us. One principal thrust of this paper is to show that the use of the automorphic factors imparts a remarkable simplicity to the final amplitude equations: the equations consist of terms that are at most quartic in cluster amplitudes, barring only a few. In close analogy to the Mk-MRCC theory, the inherent linear dependence of the cluster amplitudes leading to redundancy is resolved by invoking sufficiency conditions, which are exact spin-free analogues of the

  17. Investigating the Correspondence Between Transcriptomic and Proteomic Expression Profiles Using Coupled Cluster Models.

    SciTech Connect

    Rogers, Simon; Girolami, Mark; Kolch, Walter; Waters, Katrina M.; Liu, Tao; Thrall, Brian D.; Wiley, H. S.

    2008-12-01

    Modern transcriptomics and proteomics enable us to survey the expression of RNAs and proteins at large scales. While these data are usually generated and analysed separately, there is an increasing interest in comparing and co-analysing transcriptome and proteome expression data. A major open question is whether transcriptome and proteome expression is linked and how it is coordinated. Results: Here we have developed a probabilistic clustering model that permits analysis of the links between transcriptomic and proteomic profiles in a sensible and flexible manner. Our coupled mixture model defines a prior probability distribution over the component to which a protein profile should be assigned conditioned on which component the associated mRNA profile belongs to. By providing probabilistic assignments this approach sits between the two extremes of concatenating the data on the assumption that mRNA and protein clusters would have a one-to-one relationship, and independent clustering where the mRNA profile provides no information on the protein profile and vice-versa. We apply this approach to a large dataset of quantitative transcriptomic and proteomic expression data obtained from a human breast epithelial cell line (HMEC) stimulated by epidermal growth factor (EGF) over a series of timepoints corresponding to one cell cycle. The results reveal a complex relationship between transcriptome and proteome with most mRNA clusters linked to at least two protein clusters, and vice versa. A more detailed analysis incorporating information on gene function from the gene ontology database shows that a high correlation of mRNA and protein expression is limited to the components of some molecular machines, such as the ribosome, cell adhesion complexes and the TCP-1 chaperonin involved in protein folding. Conclusions: The dynamic regulation of the transcriptome and proteome in mammalian cells in response to an acute mitogenic stimulus appears largely independent with very little

  18. Massively parallel implementations of coupled-cluster methods for electron spin resonance spectra. I. Isotropic hyperfine coupling tensors in large radicals

    NASA Astrophysics Data System (ADS)

    Verma, Prakash; Perera, Ajith; Morales, Jorge A.

    2013-11-01

    Coupled cluster (CC) methods provide highly accurate predictions of molecular properties, but their high computational cost has precluded their routine application to large systems. Fortunately, recent computational developments in the ACES III program by the Bartlett group [the OED/ERD atomic integral package, the super instruction processor, and the super instruction architecture language] permit overcoming that limitation by providing a framework for massively parallel CC implementations. In that scheme, we are further extending those parallel CC efforts to systematically predict the three main electron spin resonance (ESR) tensors (A-, g-, and D-tensors) to be reported in a series of papers. In this paper inaugurating that series, we report our new ACES III parallel capabilities that calculate isotropic hyperfine coupling constants in 38 neutral, cationic, and anionic radicals that include the 11B, 17O, 9Be, 19F, 1H, 13C, 35Cl, 33S,14N, 31P, and 67Zn nuclei. Present parallel calculations are conducted at the Hartree-Fock (HF), second-order many-body perturbation theory [MBPT(2)], CC singles and doubles (CCSD), and CCSD with perturbative triples [CCSD(T)] levels using Roos augmented double- and triple-zeta atomic natural orbitals basis sets. HF results consistently overestimate isotropic hyperfine coupling constants. However, inclusion of electron correlation effects in the simplest way via MBPT(2) provides significant improvements in the predictions, but not without occasional failures. In contrast, CCSD results are consistently in very good agreement with experimental results. Inclusion of perturbative triples to CCSD via CCSD(T) leads to small improvements in the predictions, which might not compensate for the extra computational effort at a non-iterative N7-scaling in CCSD(T). The importance of these accurate computations of isotropic hyperfine coupling constants to elucidate experimental ESR spectra, to interpret spin-density distributions, and to

  19. Massively parallel implementations of coupled-cluster methods for electron spin resonance spectra. I. Isotropic hyperfine coupling tensors in large radicals

    SciTech Connect

    Verma, Prakash; Morales, Jorge A.; Perera, Ajith

    2013-11-07

    Coupled cluster (CC) methods provide highly accurate predictions of molecular properties, but their high computational cost has precluded their routine application to large systems. Fortunately, recent computational developments in the ACES III program by the Bartlett group [the OED/ERD atomic integral package, the super instruction processor, and the super instruction architecture language] permit overcoming that limitation by providing a framework for massively parallel CC implementations. In that scheme, we are further extending those parallel CC efforts to systematically predict the three main electron spin resonance (ESR) tensors (A-, g-, and D-tensors) to be reported in a series of papers. In this paper inaugurating that series, we report our new ACES III parallel capabilities that calculate isotropic hyperfine coupling constants in 38 neutral, cationic, and anionic radicals that include the {sup 11}B, {sup 17}O, {sup 9}Be, {sup 19}F, {sup 1}H, {sup 13}C, {sup 35}Cl, {sup 33}S,{sup 14}N, {sup 31}P, and {sup 67}Zn nuclei. Present parallel calculations are conducted at the Hartree-Fock (HF), second-order many-body perturbation theory [MBPT(2)], CC singles and doubles (CCSD), and CCSD with perturbative triples [CCSD(T)] levels using Roos augmented double- and triple-zeta atomic natural orbitals basis sets. HF results consistently overestimate isotropic hyperfine coupling constants. However, inclusion of electron correlation effects in the simplest way via MBPT(2) provides significant improvements in the predictions, but not without occasional failures. In contrast, CCSD results are consistently in very good agreement with experimental results. Inclusion of perturbative triples to CCSD via CCSD(T) leads to small improvements in the predictions, which might not compensate for the extra computational effort at a non-iterative N{sup 7}-scaling in CCSD(T). The importance of these accurate computations of isotropic hyperfine coupling constants to elucidate

  20. Improving the implementation of tailored expectant management in subfertile couples: protocol for a cluster randomized trial

    PubMed Central

    2013-01-01

    Background Prognostic models in reproductive medicine can help to identify subfertile couples who would benefit from fertility treatment. Expectant management in couples with a good chance of natural conception, i.e., tailored expectant management (TEM), prevents unnecessary treatment and is therefore recommended in international fertility guidelines. However, current implementation is not optimal, leaving room for improvement. Based on barriers and facilitators for TEM that were recently identified among professionals and subfertile couples, we have developed a multifaceted implementation strategy. The goal of this study is to assess the effects of this implementation strategy on the guideline adherence on TEM. Methods/design In a cluster randomized trial, 25 clinics and their allied practitioners units will be randomized between the multifaceted implementation strategy and care as usual. Randomization will be stratified for in vitro fertilization (IVF) facilities (full licensed, intermediate/no IVF facilities). The effect of the implementation strategy, i.e., the percentage guideline adherence on TEM, will be evaluated by pre- and post-randomization data collection. Furthermore, there will be a process and cost evaluation of the strategy. The implementation strategy will focus on subfertile couples and their care providers i.e., general practitioners (GPs), fertility doctors, and gynecologists. The implementation strategy addresses three levels: patient level: education materials in the form of a patient information leaflet and a website; professional level: audit and feedback, educational outreach visit, communication training, and access to a digital version of the prognostic model of Hunault on a website; organizational level: providing a protocol based on the guideline. The primary outcome will be the percentage guideline adherence on TEM. Additional outcome measures will be treatment-, patient-, and process-related outcome measures. Discussion This study

  1. Comparison of complete model space quasidegenerate many-body perturbation theory for LiH with multireference coupled cluster method

    NASA Astrophysics Data System (ADS)

    Wang, Xiao-Chuan; Freed, Karl F.

    1989-09-01

    The relative efficacy of using low order trucations with large reference space vs high order methods with small reference space is tested by comparing quasidegenerate many-body perturbation theory (QDMBPT) calculations of potential curves for the five lowest electronic states of LiH with the multireference coupled cluster calculations of Ben-Shlomo and Kaldor [J. Chem. Phys. 89, 956 (1988)]. The infinite order coupled cluster calculations use two configurational reference spaces involving the 2σ, 3σ, and 1π orbitals, while the QDMBPT computations are truncated at either second or third orders and employ the full active reference space formed either from the 2σ, 3σ, and 1π or from the 2σ, 3σ, 4σ, and 1π orbitals. This gives us the opportunity of testing the dependence of QDMBPT computations on the size of reference space, the available freedom in choosing valence orbitals and orbital energies, and the order of truncation. Second order, four valence orbital space QDMBPT calculations provide good agreement with the repulsive portion of the coupled cluster potentials, but yield a separated atom limit that is too high and that therefore distorts the remainder of the potential. Third order improves the separated atom limit considerably, providing good agreement with the coupled cluster calculations. The ``full chemical'' five orbital reference space, on the other hand, yields very good agreement with coupled cluster potentials when using only the simpler second order QDMBPT calculations, and third order corrections in this case are very small but generally improve agreement with coupled cluster potentials. The five orbital reference space calculations are quite insensitive to a wide range of different choices of valence orbitals and orbital energies, demonstrating a robustness to the QDMBPT formalism used.

  2. Equation-of-motion coupled cluster method for the description of the high spin excited states.

    PubMed

    Musiał, Monika; Lupa, Łukasz; Kucharski, Stanisław A

    2016-04-21

    The equation-of-motion (EOM) coupled cluster (CC) approach in the version applicable for the excitation energy(EE) calculations has been formulated for high spin components. The EE-EOM-CC scheme based on the restricted Hartree-Fock reference and standard amplitude equations as used in the Davidson diagonalization procedure yields the singlet states. The triplet and higher spin components require separate amplitude equations. In the case of quintets, the relevant equations are much simpler and easier to solve. Out of 26 diagrammatic terms contributing to the R1 and R2 singlet equations in the case of quintets, only R2 operator survives with 5 diagrammatic terms present. In addition all terms engaging three body elements of the similarity transformed Hamiltonian disappear. This indicates a substantial simplification of the theory. The implemented method has been applied to the pilot study of the excited states of the C2 molecule and quintet states of C and Si atoms. PMID:27389207

  3. Equation-of-motion coupled cluster method for high spin double electron attachment calculations

    SciTech Connect

    Musiał, Monika Lupa, Łukasz; Kucharski, Stanisław A.

    2014-03-21

    The new formulation of the equation-of-motion (EOM) coupled cluster (CC) approach applicable to the calculations of the double electron attachment (DEA) states for the high spin components is proposed. The new EOM equations are derived for the high spin triplet and quintet states. In both cases the new equations are easier to solve but the substantial simplification is observed in the case of quintets. Out of 21 diagrammatic terms contributing to the standard DEA-EOM-CCSDT equations for the R{sub 2} and R{sub 3} amplitudes only four terms survive contributing to the R{sub 3} part. The implemented method has been applied to the calculations of the excited states (singlets, triplets, and quintets) energies of the carbon and silicon atoms and potential energy curves for selected states of the Na{sub 2} (triplets) and B{sub 2} (quintets) molecules.

  4. Coupled-cluster method: A lattice-path-based subsystem approximation scheme for quantum lattice models

    SciTech Connect

    Bishop, R. F.; Li, P. H. Y.

    2011-04-15

    An approximation hierarchy, called the lattice-path-based subsystem (LPSUBm) approximation scheme, is described for the coupled-cluster method (CCM). It is applicable to systems defined on a regular spatial lattice. We then apply it to two well-studied prototypical (spin-(1/2) Heisenberg antiferromagnetic) spin-lattice models, namely, the XXZ and the XY models on the square lattice in two dimensions. Results are obtained in each case for the ground-state energy, the ground-state sublattice magnetization, and the quantum critical point. They are all in good agreement with those from such alternative methods as spin-wave theory, series expansions, quantum Monte Carlo methods, and the CCM using the alternative lattice-animal-based subsystem (LSUBm) and the distance-based subsystem (DSUBm) schemes. Each of the three CCM schemes (LSUBm, DSUBm, and LPSUBm) for use with systems defined on a regular spatial lattice is shown to have its own advantages in particular applications.

  5. Synergy between pair coupled cluster doubles and pair density functional theory

    SciTech Connect

    Garza, Alejandro J.; Bulik, Ireneusz W.; Henderson, Thomas M.; Scuseria, Gustavo E.

    2015-01-28

    Pair coupled cluster doubles (pCCD) has been recently studied as a method capable of accounting for static correlation with low polynomial cost. We present three combinations of pCCD with Kohn–Sham functionals of the density and on-top pair density (the probability of finding two electrons on top of each other) to add dynamic correlation to pCCD without double counting. With a negligible increase in computational cost, these pCCD+DFT blends greatly improve upon pCCD in the description of typical problems where static and dynamic correlations are both important. We argue that—as a black-box method with low scaling, size-extensivity, size-consistency, and a simple quasidiagonal two-particle density matrix—pCCD is an excellent match for pair density functionals in this type of fusion of multireference wavefunctions with DFT.

  6. Coupled-cluster method: A lattice-path-based subsystem approximation scheme for quantum lattice models

    NASA Astrophysics Data System (ADS)

    Bishop, R. F.; Li, P. H. Y.

    2011-04-01

    An approximation hierarchy, called the lattice-path-based subsystem (LPSUBm) approximation scheme, is described for the coupled-cluster method (CCM). It is applicable to systems defined on a regular spatial lattice. We then apply it to two well-studied prototypical (spin-(1)/(2) Heisenberg antiferromagnetic) spin-lattice models, namely, the XXZ and the XY models on the square lattice in two dimensions. Results are obtained in each case for the ground-state energy, the ground-state sublattice magnetization, and the quantum critical point. They are all in good agreement with those from such alternative methods as spin-wave theory, series expansions, quantum Monte Carlo methods, and the CCM using the alternative lattice-animal-based subsystem (LSUBm) and the distance-based subsystem (DSUBm) schemes. Each of the three CCM schemes (LSUBm, DSUBm, and LPSUBm) for use with systems defined on a regular spatial lattice is shown to have its own advantages in particular applications.

  7. The ground-state potential energy curve of the radium dimer from relativistic coupled cluster calculations

    NASA Astrophysics Data System (ADS)

    Teodoro, Tiago Quevedo; Haiduke, Roberto Luiz Andrade; Dammalapati, Umakanth; Knoop, Steven; Visscher, Lucas

    2015-08-01

    The potential energy curve for the ground-state of radium dimer (Ra2) is provided by means of atomic and molecular relativistic coupled cluster calculations. The short-range part of this curve is defined by an equilibrium bond length of 5.324 Å, a dissociation energy of 897 cm-1, and a harmonic vibrational frequency of 20.5 cm-1. The asymptotic behavior at large interatomic distances is characterized by the van der Waals coefficients C6 = 5.090 × 103, C8 = 6.978 × 105, and C10 = 8.786 × 107 atomic units. The two regions are matched in an analytical potential to provide a convenient representation for use in further calculations, for instance, to model cold collisions between radium atoms. This might become relevant in future experiments on ultracold, optically trapped, radioactive radium atoms that are used to search for a permanent electric dipole moment.

  8. Elastic Proton Scattering of Medium Mass Nuclei from Coupled-Cluster Theory

    SciTech Connect

    Hagen, G.; MichelN.,

    2012-01-01

    Using coupled-cluster theory and interactions from chiral effective field theory, we compute overlap functions for transfer and scattering of low-energy protons on the target nucleus 40Ca. Effects of three-nucleon forces are included phenomenologically as in-medium two-nucleon interactions. Using known asymptotic forms for one-nucleon overlap functions we derive a simple and intuitive way of computing scattering observables such as elastic scattering phase shifts and cross sections. As a first application and proof of principle, we compute phase shifts and differential interaction cross sections at energies of 9.6 and 12.44 MeV and compare with experimental data. Our computed diffraction minima are in fair agreement with experimental results, while we tend to overestimate the cross sections at large scattering angles.

  9. Equation-of-motion coupled cluster method for the description of the high spin excited states

    NASA Astrophysics Data System (ADS)

    Musiał, Monika; Lupa, Łukasz; Kucharski, Stanisław A.

    2016-04-01

    The equation-of-motion (EOM) coupled cluster (CC) approach in the version applicable for the excitation energy (EE) calculations has been formulated for high spin components. The EE-EOM-CC scheme based on the restricted Hartree-Fock reference and standard amplitude equations as used in the Davidson diagonalization procedure yields the singlet states. The triplet and higher spin components require separate amplitude equations. In the case of quintets, the relevant equations are much simpler and easier to solve. Out of 26 diagrammatic terms contributing to the R1 and R2 singlet equations in the case of quintets, only R2 operator survives with 5 diagrammatic terms present. In addition all terms engaging three body elements of the similarity transformed Hamiltonian disappear. This indicates a substantial simplification of the theory. The implemented method has been applied to the pilot study of the excited states of the C2 molecule and quintet states of C and Si atoms.

  10. Actinide chemistry using singlet-paired coupled cluster and its combinations with density functionals.

    PubMed

    Garza, Alejandro J; Sousa Alencar, Ana G; Scuseria, Gustavo E

    2015-12-28

    Singlet-paired coupled cluster doubles (CCD0) is a simplification of CCD that relinquishes a fraction of dynamic correlation in order to be able to describe static correlation. Combinations of CCD0 with density functionals that recover specifically the dynamic correlation missing in the former have also been developed recently. Here, we assess the accuracy of CCD0 and CCD0+DFT (and variants of these using Brueckner orbitals) as compared to well-established quantum chemical methods for describing ground-state properties of singlet actinide molecules. The f(0) actinyl series (UO2(2+), NpO2(3+), PuO2(4+)), the isoelectronic NUN, and thorium (ThO, ThO(2+)) and nobelium (NoO, NoO2) oxides are studied. PMID:26723650

  11. Relativistic coupled-cluster calculations of {sup 20}Ne, {sup 40}Ar, {sup 84}Kr, and {sup 129}Xe: Correlation energies and dipole polarizabilities

    SciTech Connect

    Mani, B. K.; Angom, D.; Latha, K. V. P.

    2009-12-15

    We have carried out a detailed and systematic study of the correlation energies of inert gas atoms Ne, Ar, Kr, and Xe using relativistic many-body perturbation theory and relativistic coupled-cluster theory. In the relativistic coupled-cluster calculations, we implement perturbative triples and include these in the correlation energy calculations. We then calculate the dipole polarizability of the ground states using perturbed coupled-cluster theory.

  12. Specific incorporation of chalcogenide bridge atoms in molybdenum/tungsten-iron-sulfur single cubane clusters.

    PubMed

    Majumdar, Amit; Holm, R H

    2011-11-01

    An extensive series of heterometal-iron-sulfur single cubane-type clusters with core oxidation levels [MFe(3)S(3)Q](3+,2+) (M = Mo, W; Q = S, Se) has been prepared by means of a new method of cluster self-assembly. The procedure utilizes the assembly system [((t)Bu(3)tach)M(VI)S(3)]/FeCl(2)/Na(2)Q/NaSR in acetonitrile/THF and affords product clusters in 30-50% yield. The trisulfido precursor acts as a template, binding Fe(II) under reducing conditions and supplying the MS(3) unit of the product. The system leads to specific incorporation of a μ(3)-chalcogenide from an external source (Na(2)Q) and affords the products [((t)Bu(3)tach)MFe(3)S(3)QL(3)](0/1-) (L = Cl(-), RS(-)), among which are the first MFe(3)S(3)Se clusters prepared. Some 16 clusters have been prepared, 13 of which have been characterized by X-ray structure determinations including the incomplete cubane [((t)Bu(3)tach)MoFe(2)S(3)Cl(2)(μ(2)-SPh)], a possible trapped intermediate in the assembly process. Comparisons of structural and electronic features of clusters differing only in atom Q at one cubane vertex are provided. In comparative pairs of complexes differing only in Q, placement of one selenide atom in the core increases core volumes by about 2% over the Q = S case, sets the order Q = Se > S in Fe-Q bond lengths and Q = S > Se in Fe-Q-Fe bond angles, causes small positive shifts in redox potentials, and has an essentially nil effect on (57)Fe isomer shifts. Iron mean oxidation states and charge distributions are assigned to most clusters from isomer shifts. ((t)Bu(3)tach = 1,3,5-tert-butyl-1,3,5-triazacyclohexane). PMID:21985054

  13. Incorporating a completely renormalized coupled cluster approach into a composite method for thermodynamic properties and reaction paths

    SciTech Connect

    Nedd, Sean; DeYonker, Nathan; Wilson, Angela; Piecuch, Piotr; Gordon, Mark

    2012-04-12

    The correlation consistent composite approach (ccCA), using the S4 complete basis set two-point extrapolation scheme (ccCA-S4), has been modified to incorporate the left-eigenstate completely renormalized coupled cluster method, including singles, doubles, and non-iterative triples (CR-CC(2,3)) as the highest level component. The new ccCA-CC(2,3) method predicts thermodynamic properties with an accuracy that is similar to that of the original ccCA-S4 method. At the same time, the inclusion of the single-reference CR-CC(2,3) approach provides a ccCA scheme that can correctly treat reaction pathways that contain certain classes of multi-reference species such as diradicals, which would normally need to be treated by more computationally demanding multi-reference methods. The new ccCA-CC(2,3) method produces a mean absolute deviation of 1.7 kcal/mol for predicted heats of formation at 298 K, based on calibration with the G2/97 set of 148 molecules, which is comparable to that of 1.0 kcal/mol obtained using the ccCA-S4 method, while significantly improving the performance of the ccCA-S4 approach in calculations involving more demanding radical and diradical species. Both the ccCA-CC(2,3) and ccCA-S4 composite methods are used to characterize the conrotatory and disrotatory isomerization pathways of bicyclo[1.1.0]butane to trans-1,3-butadiene, for which conventional coupled cluster methods, such as the CCSD(T) approach used in the ccCA-S4 model and, in consequence, the ccCA-S4 method itself might fail by incorrectly placing the disrotatory pathway below the conrotatory one. The ccCA-CC(2,3) scheme provides correct pathway ordering while providing an accurate description of the activation and reaction energies characterizing the lowest-energy conrotatory pathway. The ccCA-CC(2,3) method is thus a viable method for the analyses of reaction mechanisms that have significant multi-reference character, and presents a generally less computationally intensive alternative to

  14. Structure of Low-Lying Excited States of Guanine in DNA and Solution: Combined Molecular Mechanics and High-Level Coupled Cluster Studies

    DOE PAGESBeta

    Kowalski, Karol; Valiev, Marat

    2007-01-01

    High-level ab-initio equation-of-motion coupled-cluster methods with singles, doubles, and noniterative triples are used, in conjunction with the combined quantum mechanical molecular mechanics approach, to investigate the structure of low-lying excited states of the guanine base in DNA and solvated environments. Our results indicate that while the excitation energy of the first excited state is barely changed compared to its gas-phase counterpart, the excitation energy of the second excited state is blue-shifted by 0.24 eV.

  15. A coupled cluster and Møller-Plesset perturbation theory study of the pressure induced phase transition in the LiH crystal

    SciTech Connect

    Grüneis, Andreas

    2015-09-14

    We employ Hartree–Fock, second-order Møller-Plesset perturbation, coupled cluster singles and doubles (CCSD) as well as CCSD plus perturbative triples (CCSD(T)) theory to study the pressure induced transition from the rocksalt to the cesium chloride crystal structure in LiH. We show that the calculated transition pressure converges rapidly in this series of increasingly accurate many-electron wave function based theories. Using CCSD(T) theory, we predict a transition pressure for the structural phase transition in the LiH crystal of 340 GPa. Furthermore, we investigate the potential energy surface for this transition in the parameter space of the Buerger path.

  16. Application of relativistic coupled-cluster theory to heavy atomic systems with strongly interacting configurations: Hyperfine interactions in {sup 207}Pb{sup +}

    SciTech Connect

    Sahoo, Bijaya K.; Chaudhuri, Rajat K.; Das, B.P.; Merlitz, Holger; Mukherjee, Debashis

    2005-09-15

    We report the results of our calculations of the magnetic dipole hyperfine constants for the ground and low-lying excited states of Pb{sup +} using the relativistic coupled-cluster theory. The spectacular role of correlation effects particularly for the 6p{sub 3/2} state is highlighted. The relative importance of core polarization and pair correlation effects have been studied and the result obtained for the ground state is different from that of Ba{sup +}, which has a single s valence electron.

  17. Single photon transport in two waveguides chirally coupled by a quantum emitter.

    PubMed

    Cheng, Mu-Tian; Ma, Xiao-San; Zhang, Jia-Yan; Wang, Bing

    2016-08-22

    We investigate single photon transport in two waveguides coupled to a two-level quantum emitter (QE). With the deduced analytical scattering amplitudes, we show that under condition of the chiral coupling between the QE and the photon in the two waveguides, the QE can play the role of ideal quantum router to redirect a single photon incident from one waveguide into the other waveguide with a probability of 100% in the ideal condition. The influences of cross coupling between two waveguides and dissipations on the routing are also shown. PMID:27557274

  18. Growth of single-layer boron nitride dome-shaped nanostructures catalysed by iron clusters.

    PubMed

    Torre, A La; Åhlgren, E H; Fay, M W; Ben Romdhane, F; Skowron, S T; Parmenter, C; Davies, A J; Jouhannaud, J; Pourroy, G; Khlobystov, A N; Brown, P D; Besley, E; Banhart, F

    2016-08-11

    We report on the growth and formation of single-layer boron nitride dome-shaped nanostructures mediated by small iron clusters located on flakes of hexagonal boron nitride. The nanostructures were synthesized in situ at high temperature inside a transmission electron microscope while the e-beam was blanked. The formation process, typically originating at defective step-edges on the boron nitride support, was investigated using a combination of transmission electron microscopy, electron energy loss spectroscopy and computational modelling. Computational modelling showed that the domes exhibit a nanotube-like structure with flat circular caps and that their stability was comparable to that of a single boron nitride layer. PMID:27486917

  19. Emergent properties of nuclei from ab initio coupled-cluster calculations

    NASA Astrophysics Data System (ADS)

    Hagen, G.; Hjorth-Jensen, M.; Jansen, G. R.; Papenbrock, T.

    2016-06-01

    Emergent properties such as nuclear saturation and deformation, and the effects on shell structure due to the proximity of the scattering continuum and particle decay channels are fascinating phenomena in atomic nuclei. In recent years, ab initio approaches to nuclei have taken the first steps towards tackling the computational challenge of describing these phenomena from Hamiltonians with microscopic degrees of freedom. This endeavor is now possible due to ideas from effective field theories, novel optimization strategies for nuclear interactions, ab initio methods exhibiting a soft scaling with mass number, and ever-increasing computational power. This paper reviews some of the recent accomplishments. We also present new results. The recently optimized chiral interaction NNLO{}{{sat}} is shown to provide an accurate description of both charge radii and binding energies in selected light- and medium-mass nuclei up to 56Ni. We derive an efficient scheme for including continuum effects in coupled-cluster computations of nuclei based on chiral nucleon–nucleon and three-nucleon forces, and present new results for unbound states in the neutron-rich isotopes of oxygen and calcium. The coupling to the continuum impacts the energies of the {J}π =1/{2}-,3/{2}-,7/{2}-,3/{2}+ states in {}{17,23,25}O, and—contrary to naive shell-model expectations—the level ordering of the {J}π =3/{2}+,5/{2}+,9/{2}+ states in {}{53,55,61}Ca. ).

  20. Assisted reproduction in a cohort of same-sex male couples and single men.

    PubMed

    Grover, Stephanie A; Shmorgun, Ziva; Moskovtsev, Sergey I; Baratz, Ari; Librach, Clifford L

    2013-08-01

    To date, there is limited published data on same-sex male couples and single men using assisted reproduction treatment to build their families. The objective of this retrospective study was to better understand treatment considerations and outcomes for this population when using assisted reproduction treatment. A total of 37 same-sex male couples and eight single men (seven homosexual and one heterosexual) who attended the CReATe Fertility Centre for assisted reproduction services were studied. There was a 21-fold increase in the number of same-sex male couples and single men undergoing assisted reproduction treatment since 2003. The mean age was 46years (24-58). Twenty-eight couples (76%) chose to use spermatozoa from both partners to fertilize their donated oocytes. Most men (32 same-sex male couples and seven single men; 87%) obtained oocytes from an anonymous donor, whereas five couples and one single man (13%) had a known donor. Anonymous donors who were open to be contacted by the child after the age of 18 were selected by 67% of patients. Of all 25 deliveries, eight (32%) were sets of twins. All of the twins were half genetic siblings. PMID:23768615

  1. Fluctuating single sp2 carbon clusters at single hotspots of silver nanoparticle dimers investigated by surface-enhanced resonance Raman scattering

    NASA Astrophysics Data System (ADS)

    Itoh, Tamitake; Yamamoto, Yuko S.; Biju, Vasudevanpillai; Tamaru, Hiroharu; Wakida, Shin-ichi

    2015-12-01

    We evaluate spectral changes in surface enhanced resonance Raman scattering (SERRS) of near-single dye molecules in hotspots of single Ag nanoparticle (NP) dimers. During the laser excitation, surface enhance florescence (SEF) of dye disappeared and the number of SERRS lines decreased until finally ca. two lines remained around 1600 and 1350 cm-1, those are evidence of G and D lines of single sp2 carbon clusters. Analysis of the G and D line intensity ratios reveals the temporal fluctuation in the crystallite size of the clusters within several angstroms; whereas, broadening and splitting in the lines enable us for identifying directly the dynamics of various defects in the clusters. This analysis reveals that the detailed fluctuations of single sp2 carbon clusters, which would be impossible to gain with other microscopic methods.

  2. First principles calculations of the structure and V L-edge X-ray absorption spectra of V2O5 using local pair natural orbital coupled cluster theory and spin-orbit coupled configuration interaction approaches.

    PubMed

    Maganas, Dimitrios; Roemelt, Michael; Hävecker, Michael; Trunschke, Annette; Knop-Gericke, Axel; Schlögl, Robert; Neese, Frank

    2013-05-21

    A detailed study of the electronic and geometric structure of V2O5 and its X-ray spectroscopic properties is presented. Cluster models of increasing size were constructed in order to represent the surface and the bulk environment of V2O5. The models were terminated with hydrogen atoms at the edges or embedded in a Madelung field. The structure and interlayer binding energies were studied with dispersion-corrected local, hybrid and double hybrid density functional theory as well as the local pair natural orbital coupled cluster method (LPNO-CCSD). Convergence of the results with respect to cluster size was achieved by extending the model to up to 20 vanadium centers. The O K-edge and the V L2,3-edge NEXAFS spectra of V2O5 were calculated on the basis of the newly developed Restricted Open shell Configuration Interaction with Singles (DFT-ROCIS) method. In this study the applicability of the method is extended to the field of solid-state catalysis. For the first time excellent agreement between theoretically predicted and experimentally measured vanadium L-edge NEXAFS spectra of V2O5 was achieved. At the same time the agreement between experimental and theoretical oxygen K-edge spectra is also excellent. Importantly, the intensity distribution between the oxygen K-edge and vanadium L-edge spectra is correctly reproduced, thus indicating that the covalency of the metal-ligand bonds is correctly described by the calculations. The origin of the spectral features is discussed in terms of the electronic structure using both quasi-atomic jj coupling and molecular LS coupling schemes. The effects of the bulk environment driven by weak interlayer interactions were also studied, demonstrating that large clusters are important in order to correctly calculate core level absorption spectra in solids. PMID:23575467

  3. Generation of intense and cold beam of Pt-Ag bi-element cluster ions having single-composition

    NASA Astrophysics Data System (ADS)

    Yasumatsu, H.

    2011-07-01

    An intense beam of bi-element Pt-Ag cluster ions with a single atomic-composition has been gained toward development of new-functional materials of the clusters fixed on a solid surface. Mass production of the bi-element cluster ions has been achieved by operating dual magnetron-sputtering devices independently in a gas aggregation cell, and the ions having a single composition are filtered out by passing through a quadrupole mass filter. The kinetic energies of the cluster ions have been reduced by collision with cold helium in order for low-energy cluster-impact deposition of the clusters on the surface. The cooling process was examined further by means of molecular-dynamics simulation.

  4. Relativistic equation-of-motion coupled-cluster method using open-shell reference wavefunction: Application to ionization potential.

    PubMed

    Pathak, Himadri; Sasmal, Sudip; Nayak, Malaya K; Vaval, Nayana; Pal, Sourav

    2016-08-21

    The open-shell reference relativistic equation-of-motion coupled-cluster method within its four-component description is successfully implemented with the consideration of single- and double- excitation approximations using the Dirac-Coulomb Hamiltonian. At the first attempt, the implemented method is employed to calculate ionization potential value of heavy atomic (Ag, Cs, Au, Fr, and Lr) and molecular (HgH and PbF) systems, where the effect of relativity does really matter to obtain highly accurate results. Not only the relativistic effect but also the effect of electron correlation is crucial in these heavy atomic and molecular systems. To justify the fact, we have taken two further approximations in the four-component relativistic equation-of-motion framework to quantify how the effect of electron correlation plays a role in the calculated values at different levels of theory. All these calculated results are compared with the available experimental data as well as with other theoretically calculated values to judge the extent of accuracy obtained in our calculations. PMID:27544090

  5. Single-Quantum Coherence Filter for Strongly Coupled Spin Systems for Localized 1H NMR Spectroscopy

    NASA Astrophysics Data System (ADS)

    Trabesinger, Andreas H.; Mueller, D. Christoph; Boesiger, Peter

    2000-08-01

    A pulse sequence for localized in vivo1H NMR spectroscopy is presented, which selectively filters single-quantum coherence built up by strongly coupled spin systems. Uncoupled and weakly coupled spin systems do not contribute to the signal output. Analytical calculations using a product operator description of the strongly coupled AB spin system as well as in vitro tests demonstrate that the proposed filter produces a signal output for a strongly coupled AB spin system, whereas the resonances of a weakly coupled AX spin system and of uncoupled spins are widely suppressed. As a potential application, the detection of the strongly coupled AA‧BB‧ spin system of taurine at 1.5 T is discussed.

  6. Using Clustered Climate Regimes to Analyze and Compare Predictions from Fully Coupled General Circulation Models

    SciTech Connect

    Hoffman, Forrest M; Hargrove, William Walter; Erickson III, David J; Oglesby, Robert J

    2005-01-01

    Changes in Earth's climate in response to atmospheric greenhouse gas buildup impact the health of terrestrial ecosystems and the hydrologic cycle. The environmental conditions influential to plant and animal life are often mapped as ecoregions, which are land areas having similar combinations of environmental characteristics. This idea is extended to establish regions of similarity with respect to climatic characteristics that evolve through time using a quantitative statistical clustering technique called Multivariate Spatio-Temporal Clustering (MSTC). MSTC was applied to the monthly time series output from a fully coupled general circulation model (GCM) called the Parallel Climate Model (PCM). Results from an ensemble of five 99-yr Business-As-Usual (BAU) transient simulations from 2000 to 2098 were analyzed. MSTC establishes an exhaustive set of recurring climate regimes that form a 'skeleton' through the 'observations' (model output) throughout the occupied portion of the climate phase space formed by the characteristics being considered. MSTC facilitates direct comparison of ensemble members and ensemble and temporal averages since the derived climate regimes provide a basis for comparison. Moreover, by mapping all land cells to discrete climate states, the dynamic behavior of any part of the system can be studied by its time-varying sequence of climate state occupancy. MSTC is a powerful tool for model developers and environmental decision makers who wish to understand long, complex time series predictions of models. Strong predicted interannual trends were revealed in this analysis, including an increase in global desertification; a decrease in the cold, dry high-latitude conditions typical of North American and Asian winters; and significant warming in Antarctica and western Greenland.

  7. Electron correlation in the interacting quantum atoms partition via coupled-cluster lagrangian densities.

    PubMed

    Holguín-Gallego, Fernando José; Chávez-Calvillo, Rodrigo; García-Revilla, Marco; Francisco, Evelio; Pendás, Ángel Martín; Rocha-Rinza, Tomás

    2016-07-15

    The electronic energy partition established by the Interacting Quantum Atoms (IQA) approach is an important method of wavefunction analyses which has yielded valuable insights about different phenomena in physical chemistry. Most of the IQA applications have relied upon approximations, which do not include either dynamical correlation (DC) such as Hartree-Fock (HF) or external DC like CASSCF theory. Recently, DC was included in the IQA method by means of HF/Coupled-Cluster (CC) transition densities (Chávez-Calvillo et al., Comput. Theory Chem. 2015, 1053, 90). Despite the potential utility of this approach, it has a few drawbacks, for example, it is not consistent with the calculation of CC properties different from the total electronic energy. To improve this situation, we have implemented the IQA energy partition based on CC Lagrangian one- and two-electron orbital density matrices. The development presented in this article is tested and illustrated with the H2 , LiH, H2 O, H2 S, N2 , and CO molecules for which the IQA results obtained under the consideration of (i) the CC Lagrangian, (ii) HF/CC transition densities, and (iii) HF are critically analyzed and compared. Additionally, the effect of the DC in the different components of the electronic energy in the formation of the T-shaped (H2 )2 van der Waals cluster and the bimolecular nucleophilic substitution between F(-) and CH3 F is examined. We anticipate that the approach put forward in this article will provide new understandings on subjects in physical chemistry wherein DC plays a crucial role like molecular interactions along with chemical bonding and reactivity. © 2016 Wiley Periodicals, Inc. PMID:27237084

  8. Identification of twinned gas phase clusters by single-shot scattering with intense soft x-ray pulses

    NASA Astrophysics Data System (ADS)

    Rupp, D.; Adolph, M.; Gorkhover, T.; Schorb, S.; Wolter, D.; Hartmann, R.; Kimmel, N.; Reich, C.; Feigl, T.; de Castro, A. R. B.; Treusch, R.; Strüder, L.; Möller, T.; Bostedt, C.

    2012-05-01

    Scattering experiments on xenon nanoclusters with high-intensity soft x-ray laser pulses from the Free-Electron LASer in Hamburg (FLASH) are performed to investigate different cluster morphologies in the gas phase. Three different types of scattering patterns can be identified. The most frequent pattern of concentric rings reflects the event of a single spherical cluster in focus. Fine interference rings similar to Newton rings appear when two clusters are illuminated at μm distance, revealing three-dimensional information about the location of the clusters. Between 10 and 30% of all hits show a previously unknown twin cluster configuration with two clusters in direct contact. Simulations of scattering patterns for twin clusters with different sizes of the two particles, degree of fusion and orientation in space allow us to explain all the observed patterns.

  9. Inversed Vernier effect based single-mode laser emission in coupled microdisks

    PubMed Central

    Li, Meng; Zhang, Nan; Wang, Kaiyang; Li, Jiankai; Xiao, Shumin; Song, Qinghai

    2015-01-01

    Recently, on-chip single-mode laser emissions in coupled microdisks have attracted considerable research attention due to their wide applications. While most of single-mode lasers in coupled microdisks or microrings have been qualitatively explained by either Vernier effect or inversed Vernier effect, none of them have been experimentally confirmed. Here, we studied the mechanism of single-mode laser operation in coupled microdisks. We found that the mode numbers had been significantly reduced to nearly single-mode within a large pumping power range from threshold to gain saturation. The detail laser spectra showed that the largest gain and the first lasing peak were mainly generated by one disk and the laser intensity was proportional to the wavelength detuning of two set of modes. The corresponding theoretical analysis showed that the experimental observations were dominated by internal coupling within one cavity, which was similar to the recently explored inversed Vernier effect in two coupled microrings. We believe our finding will be important for understanding the previous experimental findings and the development of on-chip single-mode laser. PMID:26330218

  10. Application of a convergent, composite coupled cluster approach to bound state, adiabatic electron affinities in atoms and small molecules.

    PubMed

    Feller, David

    2016-01-01

    Benchmark quality adiabatic electron affinities for a collection of atoms and small molecules were obtained with the Feller-Peterson-Dixon composite coupled cluster theory method. Prior applications of this method demonstrated its ability to accurately predict atomization energies/heats of formation for more than 170 molecules. In the current work, the 1-particle expansion involved very large correlation consistent basis sets, ranging up to aug-cc-pV9Z (aug-cc-pV10Z for H and H2), with the goal of minimizing the residual basis set truncation error that must otherwise be approximated with extrapolation formulas. The n-particle expansion begins with coupled cluster calculations through iterative single and double excitations plus a quasiperturbative treatment of "connected" triple excitations (CCSD(T)) pushed to the complete basis set limit followed by CCSDT, CCSDTQ, or CCSDTQ5 corrections. Due to the small size of the systems examined here, it was possible in many cases to extend the n-particle expansion to the full configuration interaction wave function limit. Additional, smaller corrections associated with core/valence correlation, scalar relativity, anharmonic zero point vibrational energies, and non-adiabatic effects were also included. The overall root mean square (RMS) deviation was 0.005 eV (0.12 kcal/mol). This level of agreement was comparable to what was found with molecular heats of formation. A 95% confidence level corresponds to roughly twice the RMS value or 0.01 eV. While the atomic electron affinities are known experimentally to high accuracy, the molecular values are less certain. This contributes to the difficulty of gauging the accuracy of the theoretical results. A limited number of electron affinities were determined with the explicitly correlated CCSD(T)-F12b method. After extending the VnZ-F12 orbital basis sets with additional diffuse functions, the F12b method was found to accurately reproduce the best F/F(-) value obtained with standard

  11. Application of a convergent, composite coupled cluster approach to bound state, adiabatic electron affinities in atoms and small molecules

    NASA Astrophysics Data System (ADS)

    Feller, David

    2016-01-01

    Benchmark quality adiabatic electron affinities for a collection of atoms and small molecules were obtained with the Feller-Peterson-Dixon composite coupled cluster theory method. Prior applications of this method demonstrated its ability to accurately predict atomization energies/heats of formation for more than 170 molecules. In the current work, the 1-particle expansion involved very large correlation consistent basis sets, ranging up to aug-cc-pV9Z (aug-cc-pV10Z for H and H2), with the goal of minimizing the residual basis set truncation error that must otherwise be approximated with extrapolation formulas. The n-particle expansion begins with coupled cluster calculations through iterative single and double excitations plus a quasiperturbative treatment of "connected" triple excitations (CCSD(T)) pushed to the complete basis set limit followed by CCSDT, CCSDTQ, or CCSDTQ5 corrections. Due to the small size of the systems examined here, it was possible in many cases to extend the n-particle expansion to the full configuration interaction wave function limit. Additional, smaller corrections associated with core/valence correlation, scalar relativity, anharmonic zero point vibrational energies, and non-adiabatic effects were also included. The overall root mean square (RMS) deviation was 0.005 eV (0.12 kcal/mol). This level of agreement was comparable to what was found with molecular heats of formation. A 95% confidence level corresponds to roughly twice the RMS value or 0.01 eV. While the atomic electron affinities are known experimentally to high accuracy, the molecular values are less certain. This contributes to the difficulty of gauging the accuracy of the theoretical results. A limited number of electron affinities were determined with the explicitly correlated CCSD(T)-F12b method. After extending the VnZ-F12 orbital basis sets with additional diffuse functions, the F12b method was found to accurately reproduce the best F/F- value obtained with standard

  12. An empirical demonstration of the problem of cluster dissimilarity from different clustering methods in a single sample.

    PubMed

    Saltstone, R; Fraboni, M

    1990-11-01

    This study utilized the four most commonly employed clustering techniques (CLINK, SLINK, UPGMA, and Ward's) to illustrate the dissimilarity of cluster group membership (based upon short-form MMPI scale scores and a measure of alcohol dependency) between partitions in a sample of 113 impaired driving offenders. Results, examined with the Rand index of cluster comparison, demonstrated that cluster group membership can be so different between alternative clustering methods as to equal chance assignment. Cautions are given with regard to the use of cluster analysis for other than exploratory work. In particular, psychologists are cautioned against attempting to use cluster analysis based upon personality inventory scores (which can never be wholly reliable or discrete) for patient classification. PMID:2286695

  13. Higher-Order Equation-of-Motion Coupled-Cluster Methods for Ionization Processes

    SciTech Connect

    Kamiya, Muneaki; Hirata, So

    2006-08-21

    Compact algebraic equations defining the equation-of-motion coupled-cluster (EOM-CC) methods for ionization potentials (IP-EOM-CC) have been derived and computer implemented by virtue of a symbolic algebra system largely automating these processes. Models with connected cluster excitation operators truncated after double, triple, or quadruple level and with linear ionization operators truncated after two-hole-one-particle (2h1p), three-hole-two-particle (3h2p), or four-hole-three-particle (4h3p) level (abbreviated as IP-EOM-CCSD, CCSDT, and CCSDTQ, respectively) have been realized into parallel algorithms taking advantage of spin, spatial, and permutation symmetries with optimal size dependence of the computational costs. They are based on spin-orbital formalisms and can describe both {alpha} and {beta} and ionizations from open-shell (doublet, triplet, etc.) reference states into ionized states with various spin magnetic quantum numbers. The application of these methods to Koopmans and satellite ionizations of N{sub 2} and CO (with the ambiguity due to finite basis sets eliminated by extrapolation) has shown that IP-EOM-CCSD frequently accounts for orbital relaxation inadequately and displays errors exceeding a couple of eV. However, these errors can be systematically reduced to tenths or even hundredths of an eV by IP-EOM-CCSDT or CCSDTQ. Comparison of spectroscopic parameters of the FH{sup +} and NH{sup +} radicals between IP-EOM-CC and experiments has also underscored the importance of higher-order IP-EOM-CC treatments. For instance, the harmonic frequencies of the {tilde A} {sup 2}{Sigma}{sup -} state of NH{sup +}+ are predicted to be 1285, 1723, and 1705 cm{sup -1} by IP-EOM-CCSD, CCSDT, and CCSDTQ, respectively, as compared to the observed value of 1707 cm{sup -1}. The small adiabatic energy separation (observed 0.04 eV) between the {tilde X} {sup 2}II and {tilde a} {sup 4}{sigma}{sup -} states of NH{sup +} also requires IP-EOM-CCSDTQ for a quantitative

  14. Basis set limit electronic excitation energies, ionization potentials, and electron affinities for the 3d transition metal atoms: Coupled cluster and multireference methods

    NASA Astrophysics Data System (ADS)

    Balabanov, Nikolai B.; Peterson, Kirk A.

    2006-08-01

    Recently developed correlation consistent basis sets for the first row transition metal elements Sc-Zn have been utilized to determine complete basis set (CBS) scalar relativistic electron affinities, ionization potentials, and 4s23dn -2-4s1dn -1 electronic excitation energies with single reference coupled cluster methods [CCSD(T), CCSDT, and CCSDTQ] and multireference configuration interaction with three reference spaces: 3d4s, 3d4s4p, and 3d4s4p3d'. The theoretical values calculated with the highest order coupled cluster techniques at the CBS limit, including extrapolations to full configuration interaction, are well within 1kcal/mol of the corresponding experimental data. For the early transition metal elements (Sc-Mn) the internally contracted multireference averaged coupled pair functional method yielded excellent agreement with experiment; however, the atomic properties for the late transition metals (Mn-Zn) proved to be much more difficult to describe with this level of theory, even with the largest reference function of the present work.

  15. Emergent properties of nuclei from ab initio coupled-cluster calculations

    DOE PAGESBeta

    Hagen, G.; Hjorth-Jensen, M.; Jansen, G. R.; Papenbrock, T.

    2016-05-17

    Emergent properties such as nuclear saturation and deformation, and the effects on shell structure due to the proximity of the scattering continuum and particle decay channels are fascinating phenomena in atomic nuclei. In recent years, ab initio approaches to nuclei have taken the first steps towards tackling the computational challenge of describing these phenomena from Hamiltonians with microscopic degrees of freedom. Our endeavor is now possible due to ideas from effective field theories, novel optimization strategies for nuclear interactions, ab initio methods exhibiting a soft scaling with mass number, and ever-increasing computational power. We review some of the recent accomplishments. We also present new results. The recently optimized chiral interaction NNLOmore » $${}_{{\\rm{sat}}}$$ is shown to provide an accurate description of both charge radii and binding energies in selected light- and medium-mass nuclei up to 56Ni. We derive an efficient scheme for including continuum effects in coupled-cluster computations of nuclei based on chiral nucleon–nucleon and three-nucleon forces, and present new results for unbound states in the neutron-rich isotopes of oxygen and calcium. Finally, the coupling to the continuum impacts the energies of the $${J}^{\\pi }=1/{2}^{-},3/{2}^{-},7/{2}^{-},3/{2}^{+}$$ states in $${}^{\\mathrm{17,23,25}}$$O, and—contrary to naive shell-model expectations—the level ordering of the $${J}^{\\pi }=3/{2}^{+},5/{2}^{+},9/{2}^{+}$$ states in $${}^{\\mathrm{53,55,61}}$$Ca.« less

  16. Controllable single-photon transport between remote coupled-cavity arrays

    NASA Astrophysics Data System (ADS)

    Qin, Wei; Nori, Franco

    2016-03-01

    We develop an approach for controllable single-photon transport between two remote one-dimensional coupled-cavity arrays, used as quantum registers, mediated by an additional one-dimensional coupled-cavity array, acting as a quantum channel. A single two-level atom located inside one cavity of the intermediate channel is used to control the long-range coherent quantum coupling between two remote registers, thereby functioning as a quantum switch. With a time-independent perturbative treatment, we find that the leakage of quantum information can in principle be made arbitrarily small. Furthermore, our method can be extended to realize a quantum router in multiregister quantum networks, where single-photons can be either stored in one of the registers or transported to another on demand. These results are confirmed by numerical simulations.

  17. Single pin BWR benchmark problem for coupled Monte Carlo - Thermal hydraulics analysis

    SciTech Connect

    Ivanov, A.; Sanchez, V.; Hoogenboom, J. E.

    2012-07-01

    As part of the European NURISP research project, a single pin BWR benchmark problem was defined. The aim of this initiative is to test the coupling strategies between Monte Carlo and subchannel codes developed by different project participants. In this paper the results obtained by the Delft Univ. of Technology and Karlsruhe Inst. of Technology will be presented. The benchmark problem was simulated with the following coupled codes: TRIPOLI-SUBCHANFLOW, MCNP-FLICA, MCNP-SUBCHANFLOW, and KENO-SUBCHANFLOW. (authors)

  18. Correspondence between physical states and solutions to the coupled-cluster equations

    SciTech Connect

    Jankowski, K.; Kowalski, K; Grabowski, I.; Monkhorst, H.J.

    1999-12-01

    To discuss the usefulness of the entries of the complete set of solutions to approximate coupled-cluster (CC) equations for the description of the states of many-electron systems, one has to be able to establish a correspondence between the states and solutions. The authors have explored four methods of finding links between the states (represented for the model by the full configuration interaction wave functions and energies) and solutions to the CC equations. Numerical studies for the P4 model, which belongs to the simplest realistic many-electron model systems, show that the states-solutions correspondence pattern strongly depends on the method employed. Only for a few states all methods considered have assigned the same solutions. Among these states are those that are energetically the closest to the reference determinants. For the remaining states the assignment is not unique and the accuracy of description depends on the physical features considered. The article is concluded with a comparison of the present results and results of the most recent studies on the structure of the complete sets of solutions to the CC equations with the findings and intuitions being the content of the work by Zivkovic and Monkhorst (J Math Phys 1978, 19, 1007).

  19. The ground-state potential energy curve of the radium dimer from relativistic coupled cluster calculations.

    PubMed

    Teodoro, Tiago Quevedo; Haiduke, Roberto Luiz Andrade; Dammalapati, Umakanth; Knoop, Steven; Visscher, Lucas

    2015-08-28

    The potential energy curve for the ground-state of radium dimer (Ra2) is provided by means of atomic and molecular relativistic coupled cluster calculations. The short-range part of this curve is defined by an equilibrium bond length of 5.324 Å, a dissociation energy of 897 cm(-1), and a harmonic vibrational frequency of 20.5 cm(-1). The asymptotic behavior at large interatomic distances is characterized by the van der Waals coefficients C6 = 5.090 × 10(3), C8 = 6.978 × 10(5), and C10 = 8.786 × 10(7) atomic units. The two regions are matched in an analytical potential to provide a convenient representation for use in further calculations, for instance, to model cold collisions between radium atoms. This might become relevant in future experiments on ultracold, optically trapped, radioactive radium atoms that are used to search for a permanent electric dipole moment. PMID:26328843

  20. Tensor decomposition techniques in the solution of vibrational coupled cluster response theory eigenvalue equations

    NASA Astrophysics Data System (ADS)

    Godtliebsen, Ian H.; Hansen, Mads Bøttger; Christiansen, Ove

    2015-01-01

    We show how the eigenvalue equations of vibrational coupled cluster response theory can be solved using a subspace projection method with Davidson update, where basis vectors are stacked tensors decomposed into canonical (CP, Candecomp/Parafac) form. In each update step, new vectors are first orthogonalized to old vectors, followed by a tensor decomposition to a prescribed threshold TCP. The algorithm can provide excitation energies and eigenvectors of similar accuracy as a full vector approach and with only a very modest increase in the number of vectors required for convergence. The algorithm is illustrated with sample calculations for formaldehyde, 1,2,5-thiadiazole, and water. Analysis of the formaldehyde and thiadiazole calculations illustrate a number of interesting features of the algorithm. For example, the tensor decomposition threshold is optimally put to rather loose values, such as TCP = 10-2. With such thresholds for the tensor decompositions, the original eigenvalue equations can still be solved accurately. It is thus possible to directly calculate vibrational wave functions in tensor decomposed format.

  1. Development and applications of a unitary group adapted state specific multi-reference coupled cluster theory with internally contracted treatment of inactive double excitations

    NASA Astrophysics Data System (ADS)

    Sinha, Debalina; Maitra, Rahul; Mukherjee, Debashis

    2012-09-01

    Any multi-reference coupled cluster (MRCC) development based on the Jeziorski-Monkhorst (JM) multi-exponential ansatz for the wave-operator Ω suffers from spin-contamination problem for non-singlet states. We have very recently proposed a spin-free unitary group adapted (UGA) analogue of the JM ansatz, where the cluster operators are defined in terms of spin-free unitary generators and a normal ordered, rather than ordinary, exponential parametrization of Ω is used. A consequence of the latter choice is the emergence of the "direct term" of the MRCC equations that terminates at exactly the quartic power of the cluster amplitudes. Our UGA-MRCC ansatz has been utilized to generate both the spin-free state specific (SS) and the state universal MRCC formalisms. It is well-known that the SSMRCC theory requires suitable sufficiency conditions to resolve the redundancy of the cluster amplitudes. In this paper, we propose an alternative variant of the UGA-SSMRCC theory, where the sufficiency conditions are used for all cluster operators containing active orbitals and the single excitations with inactive orbitals, while the inactive double excitations are assumed to be independent of the model functions they act upon. The working equations for the inactive double excitations are thus derived in an internally contracted (IC) manner in the sense that the matrix elements entering the MRCC equations involve excitations from an entire combination of the model functions. We call this theory as UGA-ICID-MRCC, where ICID is the acronym for "Internally Contracted treatment of Inactive Double excitations." Since the number of such excitations are the most numerous, choosing them to be independent of the model functions will lead to very significant reduction in the number of cluster amplitudes for large active spaces, and is worth exploring. Moreover, unlike for the excitations involving active orbitals, where there is inadequate coupling between the model and the virtual functions

  2. Mie-resonance-coupled total broadband transmission through a single subwavelength aperture

    NASA Astrophysics Data System (ADS)

    Sheng Guo, Yun; Zhou, Ji; Wen Lan, Chu; Ya Wu, Hong; Bi, Ke

    2014-05-01

    Using strongly localized electromagnetic fields and efficiently coupled Mie resonances of two high-permittivity low-loss ceramic particles located at either side of a metallic aperture, we demonstrate total broadband transmission of microwaves, requiring no specific polarization, through a single subwavelength aperture. With radius 17 times smaller than the resonance wavelength, coupling efficiency is enhanced 12- and 300-fold over that attained for resonator-aperture and aperture-only couplings. The proposed approach can be tuned from microwave to optical bands to realize total transmissions.

  3. Surface acoustic wave regulated single photon emission from a coupled quantum dot-nanocavity system

    NASA Astrophysics Data System (ADS)

    Weiß, M.; Kapfinger, S.; Reichert, T.; Finley, J. J.; Wixforth, A.; Kaniber, M.; Krenner, H. J.

    2016-07-01

    A coupled quantum dot-nanocavity system in the weak coupling regime of cavity-quantumelectrodynamics is dynamically tuned in and out of resonance by the coherent elastic field of a fSAW ≃ 800 MHz surface acoustic wave. When the system is brought to resonance by the sound wave, light-matter interaction is strongly increased by the Purcell effect. This leads to a precisely timed single photon emission as confirmed by the second order photon correlation function, g(2). All relevant frequencies of our experiment are faithfully identified in the Fourier transform of g(2), demonstrating high fidelity regulation of the stream of single photons emitted by the system.

  4. Application of Coupled-Cluster Methods to the Prediction and Interpretation of the Spectra of Molecules of Interest in Atmospheric Chemistry

    NASA Technical Reports Server (NTRS)

    Lee, Timothy J.; Arnold, James O. (Technical Monitor)

    1994-01-01

    The quality of fundamental vibrational frequencies determined using the CCSD(T) method (singles and doubles coupled-cluster theory plus a perturbational estimate of the effects of connected triple excitations) is shown to be very good, usually predicting band centers to within +/-8/cm. This approach is applied to several molecules of interest in atmospheric chemistry, including HNO, NO2(+), H2CO, and HOCl. The HNO molecule displays a large and unusual anharmonicity in the H-N stretch. For the calculation of ultraviolet (UV) spectra, the linear response CCSD (LRCCSD) approach (which is equivalent to EOM-CCSD) has been shown to yield vertical excitation energies that are accurate to approximately 0.1 eV for singly excited electronic states. This method together with more approximate methods is used to examine the UV spectra of several molecules important in stratospheric chemistry, including HOCl, Cl2O, ClOOCl, ClOOH, and HOOH.

  5. Enhancement of multiphoton emission from single CdSe quantum dots coupled to gold films.

    PubMed

    LeBlanc, Sharonda J; McClanahan, Mason R; Jones, Marcus; Moyer, Patrick J

    2013-04-10

    Single molecule time-resolved fluorescence spectroscopy of CdSe/ZnS core-shell quantum dots (QDs) localized near a rough gold thin film demonstrates significant enhancement of multiphoton emission while at the same time showing a decrease in single photon emission. A rigorous analysis of time-resolved photon correlation spectroscopy and fluorescence lifetime data on single quantum dots at room temperature reveals an increase in radiative recombination rate of multiexcitons that is much higher than expected and, perhaps more significantly, is not correlated with concomitant increases in single exciton recombination rates. We believe that these results confirm a stronger coupling of multiexcitons to plasmon modes via a coupling to plasmon multipole modes. PMID:23510412

  6. Clustering method for counting passengers getting in a bus with single camera

    NASA Astrophysics Data System (ADS)

    Yang, Tao; Zhang, Yanning; Shao, Dapei; Li, Ying

    2010-03-01

    Automatic counting of passengers is very important for both business and security applications. We present a single-camera-based vision system that is able to count passengers in a highly crowded situation at the entrance of a traffic bus. The unique characteristics of the proposed system include, First, a novel feature-point-tracking- and online clustering-based passenger counting framework, which performs much better than those of background-modeling-and foreground-blob-tracking-based methods. Second, a simple and highly accurate clustering algorithm is developed that projects the high-dimensional feature point trajectories into a 2-D feature space by their appearance and disappearance times and counts the number of people through online clustering. Finally, all test video sequences in the experiment are captured from a real traffic bus in Shanghai, China. The results show that the system can process two 320×240 video sequences at a frame rate of 25 fps simultaneously, and can count passengers reliably in various difficult scenarios with complex interaction and occlusion among people. The method achieves high accuracy rates up to 96.5%.

  7. Nanopore integrated with Au clusters formed under electron beam irradiation for single molecule analysis

    NASA Astrophysics Data System (ADS)

    Choi, Seong Soo; Park, Myoung Jin; Han, Chul Hee; Kim, Sung In; Yoo, Jung Ho; Park, Kyung Jin; Park, Nam Kyou; Kim, Yong-Sang

    2016-02-01

    Recently the single molecules such as protein and deoxyribonucleic acid (DNA) have been successfully characterized using a solidstate nanopore with an electrical detection technique. However, the optical plasmonic nanopore has yet to be fabricated. The optical detection technique can be better utilized as next generation ultrafast geneome sequencing devices due to the possible utilization of the current optical technique for genome sequencing. In this report, we have investigated the Au nanopore formation under the electron beam irradiation on an Au aperture. The circular-type nanoopening with ~ 5 nm diameter on the diffused membrane is fabricated by using 2 keV electron beam irradiation by using field emission scanning electron microscopy (FESEM). We found the Au cluster on the periphery of the drilled aperture under a 2 keV electron beam irradiation. Immediately right after electron beam irradiation, no Au cluster and no Au crystal lattice structure on the diffused plane are observed. However, after the sample was kept for ~ 6 months under a room environment, the Au clusters are found on the diffused membrane and the Au crystal lattice structures on the diffused membrane are also found using high resolution transmission electron microscopy. These phenomena can be attributed to Ostwald ripening. In addition, the Au nano-hole on the 40 nm thick Au membrane was also drilled by using 200 keV scanning transmission electron microscopy.

  8. Benchmark calculations on the nuclear quadrupole-coupling parameters for open-shell molecules using non-relativistic and scalar-relativistic coupled-cluster methods

    SciTech Connect

    Cheng, Lan

    2015-08-14

    Quantum-chemical computations of nuclear quadrupole-coupling parameters for 24 open-shell states of small molecules based on non-relativistic and spin-free exact two-component (SFX2C) relativistic equation-of-motion coupled-cluster (EOM-CC) as well as spin-orbital-based restricted open-shell Hartree-Fock coupled-cluster (ROHF-CC) methods are reported. Relativistic effects, the performance of the EOM-CC and ROHF-CC methods for treating electron correlation, as well as basis-set convergence have been carefully analyzed. Consideration of relativistic effects is necessary for accurate calculations on systems containing third-row (K-Kr) and heavier elements, as expected, and the SFX2C approach is shown to be a useful cost-effective option here. Further, it is demonstrated that the EOM-CC methods constitute flexible and accurate alternatives to the ROHF-CC methods in the calculations of nuclear quadrupole-coupling parameters for open-shell states.

  9. Strong Coupling between a Trapped Single Atom and an All-Fiber Cavity.

    PubMed

    Kato, Shinya; Aoki, Takao

    2015-08-28

    We demonstrate an all-fiber cavity quantum electrodynamics system with a trapped single atom in the strong coupling regime. We use a nanofiber Fabry-Perot cavity, that is, an optical nanofiber sandwiched by two fiber-Bragg-grating mirrors. Measurements of the cavity transmission spectrum with a single atom in a state-insensitive nanofiber trap clearly reveal the vacuum Rabi splitting. PMID:26371652

  10. Sparse maps--A systematic infrastructure for reduced-scaling electronic structure methods. II. Linear scaling domain based pair natural orbital coupled cluster theory.

    PubMed

    Riplinger, Christoph; Pinski, Peter; Becker, Ute; Valeev, Edward F; Neese, Frank

    2016-01-14

    Domain based local pair natural orbital coupled cluster theory with single-, double-, and perturbative triple excitations (DLPNO-CCSD(T)) is a highly efficient local correlation method. It is known to be accurate and robust and can be used in a black box fashion in order to obtain coupled cluster quality total energies for large molecules with several hundred atoms. While previous implementations showed near linear scaling up to a few hundred atoms, several nonlinear scaling steps limited the applicability of the method for very large systems. In this work, these limitations are overcome and a linear scaling DLPNO-CCSD(T) method for closed shell systems is reported. The new implementation is based on the concept of sparse maps that was introduced in Part I of this series [P. Pinski, C. Riplinger, E. F. Valeev, and F. Neese, J. Chem. Phys. 143, 034108 (2015)]. Using the sparse map infrastructure, all essential computational steps (integral transformation and storage, initial guess, pair natural orbital construction, amplitude iterations, triples correction) are achieved in a linear scaling fashion. In addition, a number of additional algorithmic improvements are reported that lead to significant speedups of the method. The new, linear-scaling DLPNO-CCSD(T) implementation typically is 7 times faster than the previous implementation and consumes 4 times less disk space for large three-dimensional systems. For linear systems, the performance gains and memory savings are substantially larger. Calculations with more than 20 000 basis functions and 1000 atoms are reported in this work. In all cases, the time required for the coupled cluster step is comparable to or lower than for the preceding Hartree-Fock calculation, even if this is carried out with the efficient resolution-of-the-identity and chain-of-spheres approximations. The new implementation even reduces the error in absolute correlation energies by about a factor of two, compared to the already accurate

  11. Sparse maps—A systematic infrastructure for reduced-scaling electronic structure methods. II. Linear scaling domain based pair natural orbital coupled cluster theory

    NASA Astrophysics Data System (ADS)

    Riplinger, Christoph; Pinski, Peter; Becker, Ute; Valeev, Edward F.; Neese, Frank

    2016-01-01

    Domain based local pair natural orbital coupled cluster theory with single-, double-, and perturbative triple excitations (DLPNO-CCSD(T)) is a highly efficient local correlation method. It is known to be accurate and robust and can be used in a black box fashion in order to obtain coupled cluster quality total energies for large molecules with several hundred atoms. While previous implementations showed near linear scaling up to a few hundred atoms, several nonlinear scaling steps limited the applicability of the method for very large systems. In this work, these limitations are overcome and a linear scaling DLPNO-CCSD(T) method for closed shell systems is reported. The new implementation is based on the concept of sparse maps that was introduced in Part I of this series [P. Pinski, C. Riplinger, E. F. Valeev, and F. Neese, J. Chem. Phys. 143, 034108 (2015)]. Using the sparse map infrastructure, all essential computational steps (integral transformation and storage, initial guess, pair natural orbital construction, amplitude iterations, triples correction) are achieved in a linear scaling fashion. In addition, a number of additional algorithmic improvements are reported that lead to significant speedups of the method. The new, linear-scaling DLPNO-CCSD(T) implementation typically is 7 times faster than the previous implementation and consumes 4 times less disk space for large three-dimensional systems. For linear systems, the performance gains and memory savings are substantially larger. Calculations with more than 20 000 basis functions and 1000 atoms are reported in this work. In all cases, the time required for the coupled cluster step is comparable to or lower than for the preceding Hartree-Fock calculation, even if this is carried out with the efficient resolution-of-the-identity and chain-of-spheres approximations. The new implementation even reduces the error in absolute correlation energies by about a factor of two, compared to the already accurate previous

  12. A Multi-State Single-Molecule Switch Actuated by Rotation of an Encapsulated Cluster within a Fullerene Cage

    SciTech Connect

    Huang, Tian; Zhao, Jin; Feng, Min; Popov, Alexey A.; Yang, Shangfeng; Dunsch, Lothar; Petek, Hrvoje

    2012-11-12

    We demonstrate a single-molecule switch based on tunneling electron-driven rotation of a triangular Sc₃N cluster within an icosahedral C 80 fullerene cage among three pairs of enantiomorphic configura-tions. Scanning tunneling microscopy imaging of switching within single molecules and electronic structure theory identify the conformational isomers and their isomerization pathways. Bias-dependent actionspectra and modeling identify the antisymmetric stretch vibration of Sc 3N cluster to be the gateway for energy transfer from the tunneling electrons to the cluster rotation. Hierarchical switching of conductivity through the internal cluster motion among multiple stationary states while maintaining a constant shape, is advantageous for the integration of endohedral fullerene-based single-molecule memory and logic devices into parallel molecular computing arc.

  13. Single molecule detection using charge-coupled device array technology. Technical progress report

    SciTech Connect

    Denton, M.B.

    1992-07-29

    A technique for the detection of single fluorescent chromophores in a flowing stream is under development. This capability is an integral facet of a rapid DNA sequencing scheme currently being developed by Los Alamos National Laboratory. In previous investigations, the detection sensitivity was limited by the background Raman emission from the water solvent. A detection scheme based on a novel mode of operating a Charge-Coupled Device (CCD) is being developed which should greatly enhance the discrimination between fluorescence from a single molecule and the background Raman scattering from the solvent. Register shifts between rows in the CCD are synchronized with the sample flow velocity so that fluorescence from a single molecule is collected in a single moving charge packet occupying an area approaching that of a single pixel while the background is spread evenly among a large number of pixels. Feasibility calculations indicate that single molecule detection should be achieved with an excellent signal-to-noise ratio.

  14. Accurate dipole polarizabilities for water clusters n=2-12 at the coupled-cluster level of theory and benchmarking of various density functionals.

    SciTech Connect

    Hammond, J.; Govind, N.; Kowalski, K.; Autschbach, J.; Xantheas, S.; PNNL; Univ. of Buffalo

    2009-12-07

    The static dipole polarizabilities of water clusters (2 {le} N {le} 12) are determined at the coupled-cluster level of theory (CCSD). For the dipole polarizability of the water monomer it was determined that the role of the basis set is more important than that of electron correlation and that the basis set augmentation converges with two sets of diffuse functions. The CCSD results are used to benchmark a variety of density functionals while the performance of several families of basis sets (Dunning, Pople, and Sadlej) in producing accurate values for the polarizabilities was also examined. The Sadlej family of basis sets was found to produce accurate results when compared to the ones obtained with the much larger Dunning basis sets. It was furthermore determined that the PBE0 density functional with the aug-cc-pVDZ basis set produces overall remarkably accurate polarizabilities at a moderate computational cost.

  15. Study of interatomic Coulombic decay of Ne(H2O)n (n = 1,3) clusters using equation-of-motion coupled-cluster method

    NASA Astrophysics Data System (ADS)

    Ghosh, Aryya; Pal, Sourav; Vaval, Nayana

    2013-08-01

    Interatomic Coulombic decay (ICD) is an efficient and ultrafast radiationless decay mechanism which can be initiated by removal of an electron from the inner-valence shell of an atom or molecule. Generally, the ICD mechanism is prevailed in weakly bound clusters. A very promising approach, known as CAP/EOM-CC, consists of the combination of complex absorbing potential (CAP) with the equation-of-motion coupled-cluster (EOM-CC) method, is applied for the first time to study the nature of the ICD mechanism. We have applied this technique to determine the lifetime of an auto-ionized, inner-valence excited state of the NeH2O, Ne(H2O)2, and Ne(H2O)3 systems. The lifetime is found to be very short and decreases significantly with the number of neighboring water molecules.

  16. Three-cluster breakup in deuteron-deuteron collisions: Single-scattering approximation

    NASA Astrophysics Data System (ADS)

    Deltuva, A.; Fonseca, A. C.

    2016-04-01

    We present results for the three-cluster breakup in deuteron-deuteron collisions at 130 and 270 MeV deuteron beam energy. The breakup amplitude is calculated using the first term in the Neumann series expansion of the corresponding exact four-nucleon equations. In analogy with nucleon-deuteron breakup where an equivalent approximation is compared with exact calculations, we expect this single-scattering approximation to provide a rough estimation of three-body breakup observables in quasifree configurations. We predict the nucleon-deuteron and deuteron-deuteron three-cluster breakup cross sections to be of a comparable size and thereby question the reliability of the recent experimental data [A. Ramazani-Moghaddam-Arani, Ph.D. thesis, University of Groningen, 2009; A. Ramazani-Moghaddam-Arani et al., EPJ Web Conf. 3, 04012 (2010), 10.1051/epjconf/20100304012], which are smaller by about three orders of magnitude. We also show that an equivalent single-scattering approximation provides a reasonable description of deuteron-deuteron elastic scattering at forward-scattering angles.

  17. Single-molecule strong coupling at room temperature in plasmonic nanocavities.

    PubMed

    Chikkaraddy, Rohit; de Nijs, Bart; Benz, Felix; Barrow, Steven J; Scherman, Oren A; Rosta, Edina; Demetriadou, Angela; Fox, Peter; Hess, Ortwin; Baumberg, Jeremy J

    2016-07-01

    Photon emitters placed in an optical cavity experience an environment that changes how they are coupled to the surrounding light field. In the weak-coupling regime, the extraction of light from the emitter is enhanced. But more profound effects emerge when single-emitter strong coupling occurs: mixed states are produced that are part light, part matter1, 2, forming building blocks for quantum information systems and for ultralow-power switches and lasers. Such cavity quantum electrodynamics has until now been the preserve of low temperatures and complicated fabrication methods, compromising its use. Here, by scaling the cavity volume to less than 40 cubic nanometres and using host–guest chemistry to align one to ten protectively isolated methylene-blue molecules, we reach the strong-coupling regime at room temperature and in ambient conditions. Dispersion curves from more than 50 such plasmonic nanocavities display characteristic light–matter mixing, with Rabi frequencies of 300 millielectronvolts for ten methylene-blue molecules, decreasing to 90 millielectronvolts for single molecules—matching quantitative models. Statistical analysis of vibrational spectroscopy time series and dark-field scattering spectra provides evidence of single-molecule strong coupling. This dressing of molecules with light can modify photochemistry, opening up the exploration of complex natural processes such as photosynthesis and the possibility of manipulating chemical bonds. PMID:27296227

  18. Single-molecule strong coupling at room temperature in plasmonic nanocavities

    NASA Astrophysics Data System (ADS)

    Chikkaraddy, Rohit; de Nijs, Bart; Benz, Felix; Barrow, Steven J.; Scherman, Oren A.; Rosta, Edina; Demetriadou, Angela; Fox, Peter; Hess, Ortwin; Baumberg, Jeremy J.

    2016-07-01

    Photon emitters placed in an optical cavity experience an environment that changes how they are coupled to the surrounding light field. In the weak-coupling regime, the extraction of light from the emitter is enhanced. But more profound effects emerge when single-emitter strong coupling occurs: mixed states are produced that are part light, part matter, forming building blocks for quantum information systems and for ultralow-power switches and lasers. Such cavity quantum electrodynamics has until now been the preserve of low temperatures and complicated fabrication methods, compromising its use. Here, by scaling the cavity volume to less than 40 cubic nanometres and using host–guest chemistry to align one to ten protectively isolated methylene-blue molecules, we reach the strong-coupling regime at room temperature and in ambient conditions. Dispersion curves from more than 50 such plasmonic nanocavities display characteristic light–matter mixing, with Rabi frequencies of 300 millielectronvolts for ten methylene-blue molecules, decreasing to 90 millielectronvolts for single molecules—matching quantitative models. Statistical analysis of vibrational spectroscopy time series and dark-field scattering spectra provides evidence of single-molecule strong coupling. This dressing of molecules with light can modify photochemistry, opening up the exploration of complex natural processes such as photosynthesis and the possibility of manipulating chemical bonds.

  19. In-situ coupling between kinase activities and protein dynamics within single focal adhesions

    PubMed Central

    Wu, Yiqian; Zhang, Kaiwen; Seong, Jihye; Fan, Jason; Chien, Shu; Wang, Yingxiao; Lu, Shaoying

    2016-01-01

    The dynamic activation of oncogenic kinases and regulation of focal adhesions (FAs) are crucial molecular events modulating cell adhesion in cancer metastasis. However, it remains unclear how these events are temporally coordinated at single FA sites. Therefore, we targeted fluorescence resonance energy transfer (FRET)-based biosensors toward subcellular FAs to report local molecular events during cancer cell adhesion. Employing single FA tracking and cross-correlation analysis, we quantified the dynamic coupling characteristics between biochemical kinase activities and structural FA within single FAs. We show that kinase activations and FA assembly are strongly and sequentially correlated, with the concurrent FA assembly and Src activation leading focal adhesion kinase (FAK) activation by 42.6 ± 12.6 sec. Strikingly, the temporal coupling between kinase activation and individual FA assembly reflects the fate of FAs at later stages. The FAs with a tight coupling tend to grow and mature, while the less coupled FAs likely disassemble. During FA disassembly, however, kinase activations lead the disassembly, with FAK being activated earlier than Src. Therefore, by integrating subcellularly targeted FRET biosensors and computational analysis, our study reveals intricate interplays between Src and FAK in regulating the dynamic life of single FAs in cancer cells. PMID:27383747

  20. In-situ coupling between kinase activities and protein dynamics within single focal adhesions.

    PubMed

    Wu, Yiqian; Zhang, Kaiwen; Seong, Jihye; Fan, Jason; Chien, Shu; Wang, Yingxiao; Lu, Shaoying

    2016-01-01

    The dynamic activation of oncogenic kinases and regulation of focal adhesions (FAs) are crucial molecular events modulating cell adhesion in cancer metastasis. However, it remains unclear how these events are temporally coordinated at single FA sites. Therefore, we targeted fluorescence resonance energy transfer (FRET)-based biosensors toward subcellular FAs to report local molecular events during cancer cell adhesion. Employing single FA tracking and cross-correlation analysis, we quantified the dynamic coupling characteristics between biochemical kinase activities and structural FA within single FAs. We show that kinase activations and FA assembly are strongly and sequentially correlated, with the concurrent FA assembly and Src activation leading focal adhesion kinase (FAK) activation by 42.6 ± 12.6 sec. Strikingly, the temporal coupling between kinase activation and individual FA assembly reflects the fate of FAs at later stages. The FAs with a tight coupling tend to grow and mature, while the less coupled FAs likely disassemble. During FA disassembly, however, kinase activations lead the disassembly, with FAK being activated earlier than Src. Therefore, by integrating subcellularly targeted FRET biosensors and computational analysis, our study reveals intricate interplays between Src and FAK in regulating the dynamic life of single FAs in cancer cells. PMID:27383747

  1. Quantum Stirling heat engine and refrigerator with single and coupled spin systems

    NASA Astrophysics Data System (ADS)

    Huang, Xiao-Li; Niu, Xin-Ya; Xiu, Xiao-Ming; Yi, Xue-Xi

    2014-02-01

    We study the reversible quantum Stirling cycle with a single spin or two coupled spins as the working substance. With the single spin as the working substance, we find that under certain conditions the reversed cycle of a heat engine is NOT a refrigerator, this feature holds true for a Stirling heat engine with an ion trapped in a shallow potential as its working substance. The efficiency of quantum Stirling heat engine can be higher than the efficiency of the Carnot engine, but the performance coefficient of the quantum Stirling refrigerator is always lower than its classical counterpart. With two coupled spins as the working substance, we find that a heat engine can turn to a refrigerator due to the increasing of the coupling constant, this can be explained by the properties of the isothermal line in the magnetic field-entropy plane.

  2. QUANTUM INFORMATION. Coherent coupling of a single spin to microwave cavity photons.

    PubMed

    Viennot, J J; Dartiailh, M C; Cottet, A; Kontos, T

    2015-07-24

    Electron spins and photons are complementary quantum-mechanical objects that can be used to carry, manipulate, and transform quantum information. To combine these resources, it is desirable to achieve the coherent coupling of a single spin to photons stored in a superconducting resonator. Using a circuit design based on a nanoscale spin valve, we coherently hybridize the individual spin and charge states of a double quantum dot while preserving spin coherence. This scheme allows us to achieve spin-photon coupling up to the megahertz range at the single-spin level. The cooperativity is found to reach 2.3, and the spin coherence time is about 60 nanoseconds. We thereby demonstrate a mesoscopic device suitable for nondestructive spin readout and distant spin coupling. PMID:26206930

  3. Efficient single photon source based on μ-fibre-coupled tunable microcavity

    PubMed Central

    Lee, Chang-Min; Lim, Hee-Jin; Schneider, Christian; Maier, Sebastian; Höfling, Sven; Kamp, Martin; Lee, Yong-Hee

    2015-01-01

    Efficient and fast on-demand single photon sources have been sought after as critical components of quantum information science. We report an efficient and tunable single photon source based on an InAs quantum dot (QD) embedded in a photonic crystal cavity coupled with a highly curved μ-fibre. Exploiting evanescent coupling between the μ-fibre and the cavity, a high collection efficiency of 23% and Purcell-enhanced spontaneous emissions are observed. In our scheme, the spectral position of a resonance can be tuned by as much as 1.5 nm by adjusting the contact position of the μ-fibre, which increases the spectral coupling probability between the QD and the cavity mode. Taking advantage of the high photon count rate and the tunability, the collection efficiencies and the decay rates are systematically investigated as a function of the QD–cavity detuning. PMID:26391607

  4. Efficient single photon source based on μ-fibre-coupled tunable microcavity.

    PubMed

    Lee, Chang-Min; Lim, Hee-Jin; Schneider, Christian; Maier, Sebastian; Höfling, Sven; Kamp, Martin; Lee, Yong-Hee

    2015-01-01

    Efficient and fast on-demand single photon sources have been sought after as critical components of quantum information science. We report an efficient and tunable single photon source based on an InAs quantum dot (QD) embedded in a photonic crystal cavity coupled with a highly curved μ-fibre. Exploiting evanescent coupling between the μ-fibre and the cavity, a high collection efficiency of 23% and Purcell-enhanced spontaneous emissions are observed. In our scheme, the spectral position of a resonance can be tuned by as much as 1.5 nm by adjusting the contact position of the μ-fibre, which increases the spectral coupling probability between the QD and the cavity mode. Taking advantage of the high photon count rate and the tunability, the collection efficiencies and the decay rates are systematically investigated as a function of the QD-cavity detuning. PMID:26391607

  5. Comparing Chemistry to Outcome: The Development of a Chemical Distance Metric, Coupled with Clustering and Hierarchal Visualization Applied to Macromolecular Crystallography

    PubMed Central

    Bruno, Andrew E.; Ruby, Amanda M.; Luft, Joseph R.; Grant, Thomas D.; Seetharaman, Jayaraman; Montelione, Gaetano T.; Hunt, John F.; Snell, Edward H.

    2014-01-01

    Many bioscience fields employ high-throughput methods to screen multiple biochemical conditions. The analysis of these becomes tedious without a degree of automation. Crystallization, a rate limiting step in biological X-ray crystallography, is one of these fields. Screening of multiple potential crystallization conditions (cocktails) is the most effective method of probing a proteins phase diagram and guiding crystallization but the interpretation of results can be time-consuming. To aid this empirical approach a cocktail distance coefficient was developed to quantitatively compare macromolecule crystallization conditions and outcome. These coefficients were evaluated against an existing similarity metric developed for crystallization, the C6 metric, using both virtual crystallization screens and by comparison of two related 1,536-cocktail high-throughput crystallization screens. Hierarchical clustering was employed to visualize one of these screens and the crystallization results from an exopolyphosphatase-related protein from Bacteroides fragilis, (BfR192) overlaid on this clustering. This demonstrated a strong correlation between certain chemically related clusters and crystal lead conditions. While this analysis was not used to guide the initial crystallization optimization, it led to the re-evaluation of unexplained peaks in the electron density map of the protein and to the insertion and correct placement of sodium, potassium and phosphate atoms in the structure. With these in place, the resulting structure of the putative active site demonstrated features consistent with active sites of other phosphatases which are involved in binding the phosphoryl moieties of nucleotide triphosphates. The new distance coefficient, CDcoeff, appears to be robust in this application, and coupled with hierarchical clustering and the overlay of crystallization outcome, reveals information of biological relevance. While tested with a single example the potential applications

  6. Single-mode quantum cascade lasers employing a candy-cane shaped monolithic coupled cavity

    NASA Astrophysics Data System (ADS)

    Liu, Peter Q.; Sladek, Kamil; Wang, Xiaojun; Fan, Jen-Yu; Gmachl, Claire F.

    2011-12-01

    We demonstrate single-mode quantum cascade lasers emitting at ˜4.5 μm by employing a monolithic "candy-cane" shaped coupled-cavity consisting of a straight section connecting at one end to a spiral section. The fabrication process is identical to those for simple Fabry-Perot-type ridge lasers. Continuously tunable single-mode emission across ˜8 cm-1 with side mode suppression ratio up to ˜25 dB and a single-mode operating current range of more than 70% above the threshold current is achieved when the lasers are operated in pulsed-mode from 80 K to 155 K.

  7. Increasing single mode power of 1.3-μm VCSELs by output coupling optimization.

    PubMed

    Mereuta, A; Caliman, A; Sirbu, A; Iakovlev, V; Mickovic, Z; Suruceanu, G; Kapon, E

    2015-05-01

    We report on the single mode emission power enhancement of 1.3-μm VCSELs by adjusting the reflectivity of the top GaAs-based DBR for output coupling optimization using selective removal of Bragg reflector layers. Devices with record single mode power of 6.8-mW at room temperature and 2.8-mW at 80°C, with more than 30 dB single mode suppression ratio, have been obtained. PMID:25969185

  8. Organic Single-Crystal Light-Emitting Transistor Coupling with Optical Feedback Resonators

    PubMed Central

    Bisri, Satria Zulkarnaen; Sawabe, Kosuke; Imakawa, Masaki; Maruyama, Kenichi; Yamao, Takeshi; Hotta, Shu; Iwasa, Yoshihiro; Takenobu, Taishi

    2012-01-01

    Organic light-emitting transistors (OLETs) are of great research interest because they combine the advantage of the active channel of a transistor that can control the luminescence of an in-situ light-emitting diode in the same device. Here we report a novel single-crystal OLET (SCLET) that is coupled with single crystal optical feedback resonators. The combination of single-crystal waveguides with native Fabry-Perot cavities, formed by parallel crystal edges, drastically lowers the threshold energy for spectral narrowing and non-linear intensity enhancement. We apply this structure to SCLETs and demonstrate the first fabrication of a SCLET with the optical feedback resonators. PMID:23248748

  9. Novel spot size converter for coupling standard single mode fibers to SOI waveguides

    NASA Astrophysics Data System (ADS)

    Sisto, Marco Michele; Fisette, Bruno; Paultre, Jacques-Edmond; Paquet, Alex; Desroches, Yan

    2016-03-01

    We have designed and numerically simulated a novel spot size converter for coupling standard single mode fibers with 10.4μm mode field diameter to 500nm × 220nm SOI waveguides. Simulations based on the eigenmode expansion method show a coupling loss of 0.4dB at 1550nm for the TE mode at perfect alignment. The alignment tolerance on the plane normal to the fiber axis is evaluated at +/-2.2μm for <=1dB excess loss, which is comparable to the alignment tolerance between two butt-coupled standard single mode fibers. The converter is based on a cross-like arrangement of SiOxNy waveguides immersed in a 12μm-thick SiO2 cladding region deposited on top of the SOI chip. The waveguides are designed to collectively support a single degenerate mode for TE and TM polarizations. This guided mode features a large overlap to the LP01 mode of standard telecom fibers. Along the spot size converter length (450μm), the mode is first gradually confined in a single SiOxNy waveguide by tapering its width. Then, the mode is adiabatically coupled to a SOI waveguide underneath the structure through a SOI inverted taper. The shapes of SiOxNy and SOI tapers are optimized to minimize coupling loss and structure length, and to ensure adiabatic mode evolution along the structure, thus improving the design robustness to fabrication process errors. A tolerance analysis based on conservative microfabrication capabilities suggests that coupling loss penalty from fabrication errors can be maintained below 0.3dB. The proposed spot size converter is fully compliant to industry standard microfabrication processes available at INO.

  10. Assessment of the accuracy of coupled cluster perturbation theory for open-shell systems. II. Quadruples expansions

    NASA Astrophysics Data System (ADS)

    Eriksen, Janus J.; Matthews, Devin A.; Jørgensen, Poul; Gauss, Jürgen

    2016-05-01

    We extend our assessment of the potential of perturbative coupled cluster (CC) expansions for a test set of open-shell atoms and organic radicals to the description of quadruple excitations. Namely, the second- through sixth-order models of the recently proposed CCSDT(Q-n) quadruples series [J. J. Eriksen et al., J. Chem. Phys. 140, 064108 (2014)] are compared to the prominent CCSDT(Q) and ΛCCSDT(Q) models. From a comparison of the models in terms of their recovery of total CC singles, doubles, triples, and quadruples (CCSDTQ) energies, we find that the performance of the CCSDT(Q-n) models is independent of the reference used (unrestricted or restricted (open-shell) Hartree-Fock), in contrast to the CCSDT(Q) and ΛCCSDT(Q) models, for which the accuracy is strongly dependent on the spin of the molecular ground state. By further comparing the ability of the models to recover relative CCSDTQ total atomization energies, the discrepancy between them is found to be even more pronounced, stressing how a balanced description of both closed- and open-shell species—as found in the CCSDT(Q-n) models—is indeed of paramount importance if any perturbative CC model is to be of chemical relevance for high-accuracy applications. In particular, the third-order CCSDT(Q-3) model is found to offer an encouraging alternative to the existing choices of quadruples models used in modern computational thermochemistry, since the model is still only of moderate cost, albeit markedly more costly than, e.g., the CCSDT(Q) and ΛCCSDT(Q) models.

  11. Assessment of the accuracy of coupled cluster perturbation theory for open-shell systems. II. Quadruples expansions.

    PubMed

    Eriksen, Janus J; Matthews, Devin A; Jørgensen, Poul; Gauss, Jürgen

    2016-05-21

    We extend our assessment of the potential of perturbative coupled cluster (CC) expansions for a test set of open-shell atoms and organic radicals to the description of quadruple excitations. Namely, the second- through sixth-order models of the recently proposed CCSDT(Q-n) quadruples series [J. J. Eriksen et al., J. Chem. Phys. 140, 064108 (2014)] are compared to the prominent CCSDT(Q) and ΛCCSDT(Q) models. From a comparison of the models in terms of their recovery of total CC singles, doubles, triples, and quadruples (CCSDTQ) energies, we find that the performance of the CCSDT(Q-n) models is independent of the reference used (unrestricted or restricted (open-shell) Hartree-Fock), in contrast to the CCSDT(Q) and ΛCCSDT(Q) models, for which the accuracy is strongly dependent on the spin of the molecular ground state. By further comparing the ability of the models to recover relative CCSDTQ total atomization energies, the discrepancy between them is found to be even more pronounced, stressing how a balanced description of both closed- and open-shell species-as found in the CCSDT(Q-n) models-is indeed of paramount importance if any perturbative CC model is to be of chemical relevance for high-accuracy applications. In particular, the third-order CCSDT(Q-3) model is found to offer an encouraging alternative to the existing choices of quadruples models used in modern computational thermochemistry, since the model is still only of moderate cost, albeit markedly more costly than, e.g., the CCSDT(Q) and ΛCCSDT(Q) models. PMID:27208932

  12. Self-aligned deterministic coupling of single quantum emitter to nanofocused plasmonic modes

    PubMed Central

    Gong, Su-Hyun; Kim, Je-Hyung; Ko, Young-Ho; Rodriguez, Christophe; Shin, Jonghwa; Lee, Yong-Hee; Dang, Le Si; Zhang, Xiang; Cho, Yong-Hoon

    2015-01-01

    The quantum plasmonics field has emerged and been growing increasingly, including study of single emitter–light coupling using plasmonic system and scalable quantum plasmonic circuit. This offers opportunity for the quantum control of light with compact device footprint. However, coupling of a single emitter to highly localized plasmonic mode with nanoscale precision remains an important challenge. Today, the spatial overlap between metallic structure and single emitter mostly relies either on chance or on advanced nanopositioning control. Here, we demonstrate deterministic coupling between three-dimensionally nanofocused plasmonic modes and single quantum dots (QDs) without any positioning for single QDs. By depositing a thin silver layer on a site-controlled pyramid QD wafer, three-dimensional plasmonic nanofocusing on each QD at the pyramid apex is geometrically achieved through the silver-coated pyramid facets. Enhancement of the QD spontaneous emission rate as high as 22 ± 16 is measured for all processed QDs emitting over ∼150-meV spectral range. This approach could apply to high fabrication yield on-chip devices for wide application fields, e.g., high-efficiency light-emitting devices and quantum information processing. PMID:25870303

  13. Single surface beyond Born-Oppenheimer equation for a three-state model Hamiltonian of Na3 cluster.

    PubMed

    Kumar Paul, Amit; Sardar, Subhankar; Sarkar, Biplab; Adhikari, Satrajit

    2009-09-28

    When a set of three states is coupled with each other but shows negligibly weak interaction with other states of the Hilbert space, these states form a sub-Hilbert space. In case of such subspace [J. Chem. Phys. 124, 074101 (2006)], (a) the adiabatic-diabatic transformation (ADT) condition, nablaA + tauA = 0 [Chem. Phys. Lett. 35, 112 (1975)], provides the explicit forms of the nonadiabatic coupling (NAC) elements in terms of electronic basis function angles, namely, the ADT angles, and (b) those NAC terms satisfy the so-called curl conditions [Chem. Phys. Lett. 35, 112 (1975)], which ensure the removal of the NAC elements [could be singular also at specific point(s) or along a seam in the configuration space] during the ADT to bring the diabatic representation of the nuclear Schrodinger equation with a smooth functional form of coupling elements among the electronic states. Since the diabatic to adiabatic representation of the Hamiltonian is related through the same unitary transformation (nablaA + tauA = 0), it could be quite interesting to explore the nature of the nonadiabatic coupling terms starting from a diabatic Hamiltonian and, thereafter, to formulate the extended Born-Oppenheimer (EBO) equation for those adiabatic states transformed from diabatic ones. We consider a three-state diabatic potential matrix constructed for the excited states of Na(3) cluster [J. Chem. Phys. 88, 6068 (1988)] at the pseudo-Jahn-Teller model situation, which can reproduce experimentally measured vibrationally resolved absorption lines [Surf. Sci. 156, 770 (1985)] with appropriate choice of coupling parameters, analytically calculate the nonadiabatic coupling elements along with their curls, and numerically evaluate the ADT angles to explore the nature of its nonadiabaticity. While formulating the single surface beyond the BO equation, our theoretical derivation demonstrates that the existence of zero curls of the NAC terms is a necessity. Indeed, when the energy gap between the

  14. Examining the ground and first excited states of methyl peroxy radical with high-level coupled-cluster theory

    NASA Astrophysics Data System (ADS)

    Copan, Andreas V.; Schaefer, Henry F., III; Agarwal, Jay

    2015-10-01

    Peroxy radicals (RO2) are intermediates in fuel combustion, where they engage in efficiency-limiting autoignition reactions. They also participate in atmospheric chemistry leading to the formation of unwanted tropospheric ozone. Advances in spectroscopic techniques have allowed for the possibility of employing the lowest (?) electronic transition of RO2 as a tool to selectively monitor these species, enabling accurate kinetic values to be obtained. Herein, high-level ab initio methods are employed to systematically refine spectroscopic predictions for the methyl peroxy radical (CH3O2), one of the most abundant peroxy radicals in the atmosphere. In particular, vibrationally corrected geometries and anharmonic vibrational frequencies for both the ground (?) and first excited (?) state are predicted using coupled-cluster theory with up to perturbative triples [CCSD(T)] and large atomic natural orbital basis sets. Equation-of-motion coupled-cluster theory is utilised to compute vertical ? transition properties; a radiative lifetime of 4.7 ms is suggested for the excited state. Finally, we predict the adiabatic excitation energy (T0) via systematic extrapolation to the complete basis limit of coupled-cluster with up to full quadruples (CCSDTQ). After accounting for several approximations, and including an anharmonic zero-point vibrational energy correction, we match experiment for this transition to within 9 cm-1. Dedicated to Professor Sourav Pal.

  15. Assessment of the CCSD and CCSD(T) Coupled-Cluster Methods in Calculating Heats of Formation for Zn Complexes

    NASA Astrophysics Data System (ADS)

    Weaver, Michael N.; Yang, Yue; Merz, Kenneth M.

    2009-08-01

    Heats of formation were calculated using coupled-cluster methods for a series of zinc complexes. The calculated values were evaluated against previously conducted computational studies using density functional methods as well as experimental values. Heats of formation for nine neutral ZnXn complexes [X = -Zn, -H, -O, -F2, -S, -Cl, -Cl2, -CH3, (-CH3)2] were determined at the CCSD and CCSD(T) levels using the 6-31G** and TZVP basis sets as well as the LANL2DZ-6-31G** (LACVP**) and LANL2DZ-TZVP hybrid basis sets. The CCSD(T)/6-31G** level of theory was found to predict the heat of formation for the nonalkyl Zn complexes most accurately. The alkyl Zn species were problematic in that none of the methods that were tested accurately predicted the heat of formation for these complexes. In instances where experimental geometric parameters were available, these were most accurately predicted by the CCSD/6-31G** level of theory; going to CCSD(T) did not improve agreement with the experimental values. Coupled-cluster methods did not offer a systemic improvement over DFT calculations for a given functional/basis set combination. With the exceptions of ZnH and ZnF2, there are multiple density functionals that outperform coupled-cluster calculations with the 6-31G** basis set.

  16. A new scheme for perturbative triples correction to (0,1) sector of Fock space multi-reference coupled cluster method: Theory, implementation, and examples

    NASA Astrophysics Data System (ADS)

    Dutta, Achintya Kumar; Vaval, Nayana; Pal, Sourav

    2015-01-01

    We propose a new elegant strategy to implement third order triples correction in the light of many-body perturbation theory to the Fock space multi-reference coupled cluster method for the ionization problem. The computational scaling as well as the storage requirement is of key concerns in any many-body calculations. Our proposed approach scales as N6 does not require the storage of triples amplitudes and gives superior agreement over all the previous attempts made. This approach is capable of calculating multiple roots in a single calculation in contrast to the inclusion of perturbative triples in the equation of motion variant of the coupled cluster theory, where each root needs to be computed in a state-specific way and requires both the left and right state vectors together. The performance of the newly implemented scheme is tested by applying to methylene, boron nitride (B2N) anion, nitrogen, water, carbon monoxide, acetylene, formaldehyde, and thymine monomer, a DNA base.

  17. A new scheme for perturbative triples correction to (0,1) sector of Fock space multi-reference coupled cluster method: Theory, implementation, and examples

    SciTech Connect

    Dutta, Achintya Kumar E-mail: s.pal@ncl.res.in; Vaval, Nayana; Pal, Sourav E-mail: s.pal@ncl.res.in

    2015-01-28

    We propose a new elegant strategy to implement third order triples correction in the light of many-body perturbation theory to the Fock space multi-reference coupled cluster method for the ionization problem. The computational scaling as well as the storage requirement is of key concerns in any many-body calculations. Our proposed approach scales as N{sup 6} does not require the storage of triples amplitudes and gives superior agreement over all the previous attempts made. This approach is capable of calculating multiple roots in a single calculation in contrast to the inclusion of perturbative triples in the equation of motion variant of the coupled cluster theory, where each root needs to be computed in a state-specific way and requires both the left and right state vectors together. The performance of the newly implemented scheme is tested by applying to methylene, boron nitride (B{sub 2}N) anion, nitrogen, water, carbon monoxide, acetylene, formaldehyde, and thymine monomer, a DNA base.

  18. A benchmark study of molecular structure by experimental and theoretical methods: Equilibrium structure of uracil from gas-phase electron diffraction data and coupled-cluster calculations

    NASA Astrophysics Data System (ADS)

    Vogt, Natalja; Khaikin, Leonid S.; Grikina, Olga E.; Rykov, Anatolii N.

    2013-10-01

    The equilibrium structure of uracil, one of the nucleobases, which build nucleic acids, has been determined for the first time by the gas-phase electron diffraction (GED) method. The necessary rovibrational corrections to the experimental internuclear distances have been calculated with quadratic and cubic force constants in the MP2(all)/cc-pVTZ approximation. For the first time, the equilibrium structure has been optimized by the very time-consuming coupled-cluster method with single and double excitations and perturbative treatment of connected triples using the correlation-consistent polarized weighted core-valence triple-zeta basis set with all electrons being correlated (CCSD(T)(all)/cc-pwCVTZ). The optimized structural parameters have been corrected for the diffuse-function effects and extrapolated to the higher basis set (cc-pwCVQZ) using results of MP2 computations (named as best ab initio structure). The GED equilibrium structure remarkably agrees with the best ab initio one as well as with that one derived from microwave (MW) rotational constants by Puzzarini and Barone. Thus, it has been revealed that the precise experiment and coupled-cluster calculations yield the same results when accurate vibrational corrections (including anharmonic ones) are considered in the experimental structural analysis. Moreover, it has been shown that the equilibrium structure derived from the GED data, being in general of one order less accurate than that determined from the MW rotational constants, is still reliable and accurate.

  19. Direct fiber-coupled single photon source based on a photonic crystal waveguide

    SciTech Connect

    Ahn, Byeong-Hyeon Lee, Chang-Min; Lim, Hee-Jin; Schlereth, Thomas W.; Kamp, Martin; Höfling, Sven; Lee, Yong-Hee

    2015-08-24

    A single photon source plays a key role in quantum applications such as quantum computers and quantum communications. Epitaxially grown quantum dots are one of the promising platforms to implement a good single photon source. However, it is challenging to realize an efficient single photon source based on semiconductor materials due to their high refractive index. Here we demonstrate a direct fiber coupled single photon source with high collection efficiency by employing a photonic crystal (PhC) waveguide and a tapered micro-fiber. To confirm the single photon nature, the second-order correlation function g{sup (2)}(τ) is measured with a Hanbury Brown-Twiss setup. The measured g{sup (2)}(0) value is 0.15, and we can estimate 24% direct collection efficiency from a quantum dot to the fiber.

  20. Chances and limits of single-station seismic event clustering by unsupervised pattern recognition

    NASA Astrophysics Data System (ADS)

    Sick, Benjamin; Guggenmos, Matthias; Joswig, Manfred

    2015-06-01

    Automatic classification of local seismic events which are only recorded at single stations poses great challenges because of weak hypocentre constraints. This study investigates how single-station event clusters relate to geographic hypocentre regions and common source processes. Typical applications arise in local seismic networks where reliable ground truth by a dense temporal network precedes or follows a sparse (permanent) installation. The seismic signals for this study comprise a 3-month subset from a field campaign to map subduction below northern Chile (PISCO '94). Due to favourable ground noise conditions in the Atacama desert, the data set contains an abundance of shallow and deeper earthquakes, and many quarry explosions. Often event signatures overlap, posing a challenge to any signal processing scheme. Pattern recognition must work on reduced seismograms to restrict parameter dimensionality. Continuous parameter extraction based on noise-adapted spectrograms was chosen instead of discrete representation by, for example, amplitudes, onset times or spectral ratios to ensure consideration of potentially hidden features. Visualization of the derived feature vectors for human inspection and template matching algorithms was hereby possible. Because event classes shall comprise earthquake regions regardless of magnitude, clustering based on amplitudes is prevented by proper normalization of feature vectors. Principal component analysis is applied to further reduce the number of features used to train a self-organizing map (SOM). The SOM will topologically arrange prototypes of each event class in a 2-D map. Overcoming the restrictions of this black-box approach, the arranged prototypes could be transformed back to spectrograms to allow for visualization and interpretation of event classes. The final step relates prototypes to ground-truth information, confirming the potential of automated, coarse-grain hypocentre clustering based on single

  1. Spectroscopic changes during a single turnover of biotin synthase: destruction of a [2Fe-2S] cluster accompanies sulfur insertion.

    PubMed

    Ugulava, N B; Sacanell, C J; Jarrett, J T

    2001-07-27

    Biotin synthase catalyzes the insertion of a sulfur atom between the saturated C6 and C9 carbons of dethiobiotin. Catalysis requires AdoMet and flavodoxin and generates 5'-deoxyadenosine and methionine, suggesting that biotin synthase is an AdoMet-dependent radical enzyme. Biotin synthase (BioB) is aerobically purified as a dimer of 38.4 kDa monomers that contains 1-1.5 [2Fe-2S](2+) clusters per monomer and can be reconstituted with exogenous iron, sulfide, and reductants to contain up to two [4Fe-4S] clusters per monomer. The iron-sulfur clusters may play a dual role in biotin synthase: a reduced iron-sulfur cluster is probably involved in radical generation by mediating the reductive cleavage of AdoMet, while recent in vitro labeling studies suggest that an iron-sulfur cluster also serves as the immediate source of sulfur for the biotin thioether ring. Consistent with this dual role for iron-sulfur clusters in biotin synthase, we have found that the protein is stable, containing one [2Fe-2S](2+) cluster and one [4Fe-4S](2+) cluster per monomer. In the present study, we demonstrate that this mixed cluster state is essential for optimal activity. We follow changes in the Fe and S content and UV/visible and EPR spectra of the enzyme during a single turnover and conclude that during catalysis the [4Fe-4S](2+) cluster is preserved while the [2Fe-2S](2+) cluster is destroyed. We propose a mechanism for incorporation of sulfur into dethiobiotin in which a sulfur atom is oxidatively extracted from the [2Fe-2S](2+) cluster. PMID:11444982

  2. Ultrafast superconducting single-photon detector with a reduced active area coupled to a tapered lensed single-mode fiber

    NASA Astrophysics Data System (ADS)

    Sidorova, Maria V.; Divochiy, Alexander V.; Vakhtomin, Yury B.; Smirnov, Konstantin V.

    2015-01-01

    This paper presents an ultrafast niobium nitride (NbN) superconducting single-photon detector (SSPD) with an active area of 3×3 μm2 that offers better timing performance metrics than the previous SSPD with an active area of 7×7 μm2. The improved SSPD demonstrates a record timing jitter (<25 ps), an ultrashort recovery time (<2 ns), an extremely low dark count rate, and a high detection efficiency in a wide spectral range from visible part to near infrared. The record parameters were obtained due to the development of a new technique providing effective optical coupling between a detector with a reduced active area and a standard single-mode telecommunication fiber. The advantages of the new approach are experimentally confirmed by taking electro-optical measurements.

  3. Single-photon transport through an atomic chain coupled to a one-dimensional nanophotonic waveguide

    NASA Astrophysics Data System (ADS)

    Liao, Zeyang; Zeng, Xiaodong; Zhu, Shi-Yao; Zubairy, M. Suhail

    2015-08-01

    We study the dynamics of a single-photon pulse traveling through a linear atomic chain coupled to a one-dimensional (1D) single mode photonic waveguide. We derive a time-dependent dynamical theory for this collective many-body system which allows us to study the real time evolution of the photon transport and the atomic excitations. Our analytical result is consistent with previous numerical calculations when there is only one atom. For an atomic chain, the collective interaction between the atoms mediated by the waveguide mode can significantly change the dynamics of the system. The reflectivity of a photon can be tuned by changing the ratio of coupling strength and the photon linewidth or by changing the number of atoms in the chain. The reflectivity of a single-photon pulse with finite bandwidth can even approach 100 % . The spectrum of the reflected and transmitted photon can also be significantly different from the single-atom case. Many interesting physical phenomena can occur in this system such as the photonic band-gap effects, quantum entanglement generation, Fano-like interference, and superradiant effects. For engineering, this system may serve as a single-photon frequency filter, single-photon modulation, and may find important applications in quantum information.

  4. An automatic measure for classifying clusters of suspected spikes into single cells versus multiunits

    NASA Astrophysics Data System (ADS)

    Tankus, Ariel; Yeshurun, Yehezkel; Fried, Itzhak

    2009-10-01

    While automatic spike sorting has been investigated for decades, little attention has been allotted to consistent evaluation criteria that will automatically determine whether a cluster of spikes represents the activity of a single cell or a multiunit. Consequently, the main tool for evaluation has remained visual inspection by a human. This paper quantifies the visual inspection process. The results are well-defined criteria for evaluation, which are mainly based on visual features of the spike waveform, and an automatic adaptive algorithm that learns the classification by a given human and can apply similar visual characteristics for classification of new data. To evaluate the suggested criteria, we recorded the activity of 1652 units (single cells and multiunits) from the cerebrum of 12 human patients undergoing evaluation for epilepsy surgery requiring implantation of chronic intracranial depth electrodes. The proposed method performed similar to human classifiers and obtained significantly higher accuracy than two existing methods (three variants of each). Evaluation on two synthetic datasets is also provided. The criteria are suggested as a standard for evaluation of the quality of separation that will allow comparison between different studies. The proposed algorithm is suitable for real-time operation and as such may allow brain-computer interfaces to treat single cells differently than multiunits.

  5. An automatic measure for classifying clusters of suspected spikes into single cells versus multiunits

    PubMed Central

    Tankus, Ariel; Yeshurun, Yehezkel; Fried, Itzhak

    2010-01-01

    While automatic spike sorting has been investigated for decades, little attention has been allotted to consistent evaluation criteria that will automatically determine whether a cluster of spikes represents the activity of a single cell or a multiunit. Consequently, the main tool for evaluation has remained visual inspection by a human. This paper quantifies the visual inspection process. The results are well-defined criteria for evaluation, which are mainly based on visual features of the spike waveform, and an automatic adaptive algorithm that learns the classification by a given human and can apply similar visual characteristics for classification of new data. To evaluate the suggested criteria, we recorded the activity of 1652 units (single cells and multiunits) from the cerebrum of 12 human patients undergoing evaluation for epilepsy surgery requiring implantation of chronic intracranial depth electrodes. The proposed method performed similar to human classifiers and obtained significantly higher accuracy than two existing methods (three variants of each). Evaluation on two synthetic datasets is also provided. The criteria are suggested as a standard for evaluation of the quality of separation that will allow comparison between different studies. The proposed algorithm is suitable for real-time operation and as such may allow brain–computer interfaces to treat single cells differently than multiunits. PMID:19667458

  6. Probing hybridization of a single energy level coupled to superconducting leads

    NASA Astrophysics Data System (ADS)

    van Zanten, D. M. T.; Balestro, F.; Courtois, H.; Winkelmann, C. B.

    2015-11-01

    Electron transport through a quantum dot coupled to superconducting leads shows a sharp conductance onset when a quantum dot orbital level crosses the superconducting coherence peak of one lead. We study superconducting single electron transistors in the weak coupling limit by connecting individual gold nanoparticles with aluminum leads formed by electromigration. We show that the transport features close to the conductance onset threshold can be accurately described by the quantum dot levels' hybridization with the leads, which is strongly enhanced by the divergent density of states at the superconducting gap edge. This highlights the importance of electron cotunneling effects in spectroscopies with superconducting probes.

  7. Interest of using piezoelectric single crystals with high electromechanical coupling factor in Coriolis Vibrating Gyros

    NASA Astrophysics Data System (ADS)

    Parent, A.; Masson, S.; Le Traon, O.

    2005-09-01

    In piezoelectric Coriolis Vibrating Gyros piezoelectricity is both used to excite the in plane reference vibration and to detect the out of plane vibration induced by an input angular rate. Quartz crystal is used because of its good mechanical properties (e.g. high quality factor... ). In this paper, the opportunity of using new piezoelectric crystals with high electromechanical coupling factor is studied. An analytical model of a piezoelectric beam CVG has been established in the case of high piezoelectric coupling. This model predicts an improvement by a factor 50 of the gyro resolution by using the ferroelectric single crystal PMN-0.34PT instead of quartz.

  8. Tunable double transparency windows induced by single subradiant element in coupled graphene plasmonic nanostructure

    NASA Astrophysics Data System (ADS)

    Hu, Cheng; Wang, Lingling; Lin, Qi; Zhai, Xiang; Ma, Xiaoying; Han, Tao; Du, Jiang

    2016-05-01

    We present the coupling-induced transparency (CIT) effect by employing the localized surface plasmon mode supported by a periodic array of graphene nanoribbons destructively interfering with the quasiguided mode supported by a single-layer graphene sheet. It is found that the resonance strength and linewidth are strongly dependent on the coupling distance. It is also shown that the degeneracy between the symmetric and antisymmetric quasiguided modes is lifted owing to the oblique incidence, resulting in the double CIT effect with an ultrahigh figure of merit (FOM) (as high as 271), which may provide potential applications in dynamic optical switching and biochemical sensing.

  9. Single-parameter spin-pumping in driven metallic rings with spin-orbit coupling

    SciTech Connect

    Ramos, J. P.; Apel, V. M.; Foa Torres, L. E. F.; Orellana, P. A.

    2014-03-28

    We consider the generation of a pure spin-current at zero bias voltage with a single time-dependent potential. To such end we study a device made of a mesoscopic ring connected to electrodes and clarify the interplay between a magnetic flux, spin-orbit coupling, and non-adiabatic driving in the production of a spin and electrical current. By using Floquet theory, we show that the generated spin to charge current ratio can be controlled by tuning the spin-orbit coupling.

  10. Body Composition Indices and Single and Clustered Cardiovascular Disease Risk Factors in Adolescents: Providing Clinical-Based Cut-Points.

    PubMed

    Gracia-Marco, Luis; Moreno, Luis A; Ruiz, Jonatan R; Ortega, Francisco B; de Moraes, Augusto César Ferreira; Gottrand, Frederic; Roccaldo, Romana; Marcos, Ascensión; Gómez-Martínez, Sonia; Dallongeville, Jean; Kafatos, Anthony; Molnar, Denes; Bueno, Gloria; de Henauw, Stefaan; Widhalm, Kurt; Wells, Jonathan C

    2016-01-01

    The aims of the present study in adolescents were 1) to examine how various body composition-screening tests relate to single and clustered cardiovascular disease (CVD) risk factors, 2) to examine how lean mass and body fatness (independently of each other) relate to clustered CVD risk factors, and 3) to calculate specific thresholds for body composition indices associated with an unhealthier clustered CVD risk. We measured 1089 European adolescents (46.7% boys, 12.5-17.49years) in 2006-2007. CVD risk factors included: systolic blood pressure, maximum oxygen uptake, homeostasis model assessment, C-reactive protein (n=748), total cholesterol/high density lipoprotein cholesterol and triglycerides. Body composition indices included: height, body mass index (BMI), lean mass, the sum of four skinfolds, central/peripheral skinfolds, waist circumference (WC), waist-to-height ratio (WHtR) and waist-to-hip ratio (WHR). Most body composition indices are associated with single CVD risk factors. The sum of four skinfolds, WHtR, BMI, WC and lean mass are strong and positively associated with clustered CVD risk. Interestingly, lean mass is positively associated with clustered CVD risk independently of body fatness in girls. Moderate and highly accurate thresholds for the sum of four skinfolds, WHtR, BMI, WC and lean mass are associated with an unhealthier clustered CVD risk (all AUC>0.773). In conclusion, our results support an association between most of the assessed body composition indices and single and clustered CVD risk factors. In addition, lean mass (independent of body fatness) is positively associated with clustered CVD risk in girls, which is a novel finding that helps to understand why an index such as BMI is a good index of CVD risk but a bad index of adiposity. Moderate to highly accurate thresholds for body composition indices associated with a healthier clustered CVD risk were found. Further studies with a longitudinal design are needed to confirm these findings

  11. Quantum interference and correlations in single dopants and exchange-coupled dopants in silicon

    NASA Astrophysics Data System (ADS)

    Salfi, Joe

    2015-03-01

    Quantum electronics exploiting the highly coherent states of single dopants in silicon invariably requires interactions between states and interfaces, and inter-dopant coupling by exchange interactions. We have developed a low temperature STM scheme for spatially resolved single-electron transport in a device-like environment, providing the first wave-function measurements of single donors and exchange-coupled acceptors in silicon. For single donors, we directly observed valley quantum interference due to linear superpositions of the valleys, and found that valley degrees of freedom are highly robust to the symmetry-breaking perturbation of nearby (3 nm) surfaces. For exchange-coupled acceptors, we measured the singlet-triplet splitting, and from the spatial tunneling probability, extracted enough information about the 2-body wavefunction amplitudes to determine the entanglement entropy, a measure of the quantum inseparability (quantum correlations) generated by the interactions between indistinguishable particles. Entanglement entropy of the J=3/2 holes was found to increase with increasing dopant distance, as Coulomb interactions overcome tunneling, coherently localizing spin towards a Heitler-London singlet, mimicing S=1/2 particles. In the future these capabilities will be exploited to peer into the inner workings of few-dopant quantum devices and shed new light on multi-dopant correlated states, engineered atom-by-atom. Work done collaboratively with J. A. Mol, R. Rahman, G. Klimeck, M. Y. Simmons, L. C. L. Hollenberg, and S. Rogge. Primary financial support from the ARC.

  12. A cyano-bridged single-molecule magnet: slow magnetic relaxation in a trigonal prismatic MnMo(6)(CN)(18) cluster.

    PubMed

    Sokol, Jennifer J; Hee, Allan G; Long, Jeffrey R

    2002-07-01

    We report the synthesis of the first well-documented example of a cyano-bridged single-molecule magnet. An assembly reaction parallel to that employed in producing the trigonal prismatic [(Me(3)tacn)(6)MnCr(6)(CN)(18)](2+) (Me(3)tacn = N,N',N"-trimethyl-1,4,7-triazacyclononane) cluster affords K[(Me(3)tacn)(6)MnMo(6)(CN)(18)](ClO(4))(3) (1), containing an analogous molybdenum(III)-substituted cluster. Fits to the DC magnetic susceptibility and magnetization data for 1 show that the MnMo(6) cluster possesses weak antiferromagnetic coupling (J = -6.7 cm(-1)), leading to an S = (13)/(2) ground state with significantly enhanced magnetic anisotropy (D = -0.33 cm(-1) and E = -0.018 cm(-1)). Consistent with these results, AC magnetic susceptibility measurements show the molecule to exhibit slow magnetic relaxation indicative of a single-molecule magnet with an energy barrier of 10 cm(-1) for spin reversal. PMID:12083909

  13. Polymer taper bridge for silicon waveguide to single mode waveguide coupling

    NASA Astrophysics Data System (ADS)

    Kruse, Kevin; Middlebrook, Christopher T.

    2016-03-01

    Coupling of optical power from high-density silicon waveguides to silica optical fibers for signal routing can incur high losses and often requires complex end-face preparation/processing. Novel coupling device taper structures are proposed for low coupling loss between silicon photonic waveguides and single mode fibers are proposed and devices are fabricated and measured in terms of performance. Theoretical mode conversion models for waveguide tapers are derived for optimal device structure design and performance. Commercially viable vertical and multi-layer taper designs using polymer waveguide materials are proposed as innovative, cost-efficient, and mass-manufacturable optical coupling devices. The coupling efficiency for both designs is determined to evaluate optimal device dimensions and alignment tolerances with both silicon rib waveguides and silicon nanowire waveguides. Propagation loss as a function of waveguide roughness and metallic loss are determined and correlated to waveguide dimensions to obtain total insertion loss for the proposed taper designs. Multi-layer tapers on gold-sputtered substrates are fabricated through photolithography as proof-of-concept devices and evaluated for device loss optimization. Tapered waveguide coupling loss with Si WGs (2.74 dB) was experimentally measured with high correlation to theoretical results.

  14. The study of Renner-Teller excited states with equation of motion coupled-cluster theory

    NASA Astrophysics Data System (ADS)

    Brown, Shawn Thomas

    The Renner-Teller (R-T) effect causes splitting in the bending potential of linear molecules with degenerate electronic states and greatly complicates experimental spectra. Traditional SCF procedures fail to describe most of these R-T electronic excited states because they suffer from the so-called variational collapse. To avoid the difficulty involved in applying multi-reference methods to these systems, we make use of the equation of motion coupled cluster method (EOM-CC). The EOM-CC method utilizes the ground state CC wave function to obtain electronic excited state energies, therefore it does not suffer from variational collapse. So in an effort to find a straightforward and accurate method for application to these special cases, we employed EOM-CC in the examination of several triatomic electronic excited states. In the first work included, EOM-CCSD was used to produce the bending potentials of the first seven electronic excited states of CS2 in order to resolve definitively some discrepancies between experiment and theory. The geometry of the B~1 B2 state was found to be severely bent and to be the lower R-T component of the 1Δu state. The second work involves determining the energetics, harmonic vibrational frequencies, equilibrium geometries and dipole moments of the ground and first triplet excited state of CCO. In order to compute the antisymmetric bending frequency, EOM-CCSD was needed. The Renner parameter, ɛ, and average harmonic bending frequency, ω2, were computed via EOM- CCSD and agreed well with experiment. Based on this agreement, similar analysis was performed on the SiSiO molecule in the third work presented. Comparison of a number of properties amongst CCO, SiCO, CSiO, SiSiO were discussed. CSiO was found to have an aberrantly large ɛ value. Since the trend in the bending frequency appears to follow expectation, ɛ seems to be a value dependent on the electronic structure. It is shown through these three examples that EOM-CCSD is indeed a

  15. A molecular ruler based on plasmon coupling of single gold andsilver nanoparticles

    SciTech Connect

    Sonnichsen, Carsten; Reinhard, Bjorn M.; Liphardt, Jan; Alivisatos, A. Paul

    2005-05-22

    Molecular rulers based on Foerster Resonance Energy Transfer (FRET) that report conformational changes and intramolecular distances of single biomolecules have helped to understand important biological processes. However, these rulers suffer from low and fluctuating signal intensities from single dyes and limited observation time due to photobleaching. The plasmon resonance in noble metal particles has been suggested as an alternative probe to overcome the limitations of organic fluorophores and the coupling of plasmons in nearby particles has been exploited to detect particle aggregation by a distinct color change in bulk experiments. Here we demonstrate that plasmon coupling can be used to monitor distances between single pairs of gold and silver nanoparticles. We use this effect to follow the directed assembly of gold and silver nanoparticle dimers in real time and to study the time dynamics of single DNA hybridization events. These ''plasmon rulers'' allowed us to continuously monitor separations of up to 70 nm for more than 3000 seconds. Single molecule in vitro studies of biological processes previously inaccessible with fluorescence based molecular rulers are enabled with plasmon rulers with extended time and distance range.

  16. Interplay of Tensor Correlations and Vibrational Coupling for Nuclear Single-Particle States

    SciTech Connect

    Colo, Gianluca; Bortignon, Pier Francesco; Sagawa, Hiroyuki

    2009-08-26

    In this contribution we introduce, for the first time, a fully microscopic approach to particle-vibration coupling (PVC) based on the use of the Skyrme effective interactions. The capability of these forces to describe single-particle states in atomic nuclei, is a longstanding issue; it is certainly clear that the fragmentation of the single-particle strength lies beyond any mean field framework. After describing the formalism on which our microscopic approach is based, we discuss few preliminary results for {sup 40}Ca and {sup 208}Pb. Some perspectives are presented.

  17. Approaching the strong coupling limit in single plasmonic nanorods interacting with J-aggregates

    PubMed Central

    Zengin, Gülis; Johansson, Göran; Johansson, Peter; Antosiewicz, Tomasz J.; Käll, Mikael; Shegai, Timur

    2013-01-01

    We studied scattering and extinction of individual silver nanorods coupled to the J-aggregate form of the cyanine dye TDBC as a function of plasmon – exciton detuning. The measured single particle spectra exhibited a strongly suppressed scattering and extinction rate at wavelengths corresponding to the J-aggregate absorption band, signaling strong interaction between the localized surface plasmon of the metal core and the exciton of the surrounding molecular shell. In the context of strong coupling theory, the observed “transparency dips” correspond to an average vacuum Rabi splitting of the order of 100 meV, which approaches the plasmon dephasing rate and, thereby, the strong coupling limit for the smallest investigated particles. These findings could pave the way towards ultra-strong light-matter interaction on the nanoscale and active plasmonic devices operating at room temperature. PMID:24166360

  18. Single-electron transmetalation in organoboron cross-coupling by photoredox/nickel dual catalysis

    PubMed Central

    Tellis, John C.; Primer, David N.; Molander, Gary A.

    2015-01-01

    The routine application of Csp3-hybridized nucleophiles in cross-coupling reactions remains an unsolved challenge in organic chemistry. The sluggish transmetalation rates observed for the preferred organoboron reagents in such transformations are a consequence of the two-electron mechanism underlying the standard catalytic approach. We describe a mechanistically distinct single-electron transfer-based strategy for the activation of organoboron reagents toward transmetalation that exhibits complementary reactivity patterns. Application of an iridium photoredox catalyst in tandem with a nickel catalyst effects the cross-coupling of potassium alkoxyalkyl- and benzyltrifluoroborates with an array of aryl bromides under exceptionally mild conditions (visible light, ambient temperature, no strong base). The transformation has been extended to the asymmetric and stereoconvergent cross-coupling of a secondary benzyltrifluoroborate. PMID:24903560

  19. Far off-resonant coupling between photonic crystal microcavity and single quantum dot with resonant excitation

    SciTech Connect

    Banihashemi, Mehdi; Ahmadi, Vahid; Nakamura, Tatsuya; Kojima, Takanori; Kojima, Kazunobu; Noda, Susumu

    2013-12-16

    In this paper, we experimentally demonstrate that with sub-nanowatt coherent s-shell excitation of a single InAs quantum dot, off-resonant coupling of 4.1 nm is possible between L3 photonic crystal microcavity and the quantum dot at 50 K. This resonant excitation reduces strongly the effect of surrounding charges to quantum dot, multiexciton complexes and pure dephasing. It seems that this far off-resonant coupling is the result of increased number of acoustical phonons due to high operating temperature of 50 K. The 4.1 nm detuning is the largest amount for this kind of coupling.

  20. Coupled processes in single fractures, double fractures and fractured porous media

    SciTech Connect

    Tsang, C.F.

    1986-12-01

    The emplacement of a nuclear waste repository in a fractured porous medium provides a heat source of large dimensions over an extended period of time. It also creates a large cavity in the rock mass, changing significantly the stress field. Such major changes induce various coupled thermohydraulic, hydromechanic and hydrochemical transport processes in the environment around a nuclear waste repository. The present paper gives, first, a general overview of the coupled processes involving thermal, mechanical, hydrological and chemical effects. Then investigations of a number of specific coupled processes are described in the context of fluid flow and transport in a single fracture, two intersecting fractures and a fractured porous medium near a nuclear waste repository. The results are presented and discussed.

  1. Coupled finite element simulation and optimization of single- and multi-stage sheet-forming processes

    NASA Astrophysics Data System (ADS)

    Tamasco, Cynthia M.; Rais-Rohani, Masoud; Buijk, Arjaan

    2013-03-01

    This article presents the development and application of a coupled finite element simulation and optimization framework that can be used for design and analysis of sheet-forming processes of varying complexity. The entire forming process from blank gripping and deep drawing to tool release and springback is modelled. The dies, holders, punch and workpiece are modelled with friction, temperature, holder force and punch speed controlled in the process simulation. Both single- and multi-stage sheet-forming processes are investigated. Process simulation is coupled with a nonlinear gradient-based optimization approach for optimizing single or multiple design objectives with imposed sheet-forming response constraints. A MATLAB program is developed and used for data-flow management between process simulation and optimization codes. Thinning, springback, damage and forming limit diagram are used to define failure in the forming process design optimization. Design sensitivity analysis and optimization results of the example problems are presented and discussed.

  2. Double and single pion photoproduction within a dynamical coupled-channels model

    DOE PAGESBeta

    Hiroyuki Kamano; Julia-Diaz, Bruno; Lee, T. -S. H.; Matsuyama, Akihiko; Sato, Toru

    2009-12-16

    Within a dynamical coupled-channels model which has already been fixed from analyzing the data of the πN → πN and γN → πN reactions, we present the predicted double pion photoproduction cross sections up to the second resonance region, W < 1.7 GeV. The roles played by the different mechanisms within our model in determining both the single and double pion photoproduction reactions are analyzed, focusing on the effects due to the direct γN → ππN mechanism, the interplay between the resonant and non-resonant amplitudes, and the coupled-channels effects. As a result, the model parameters which can be determined mostmore » effectively in the combined studies of both the single and double pion photoproduction data are identified for future studies.« less

  3. Charge noise, spin-orbit coupling, and dephasing of single-spin qubits

    SciTech Connect

    Bermeister, Adam; Keith, Daniel; Culcer, Dimitrie

    2014-11-10

    Quantum dot quantum computing architectures rely on systems in which inversion symmetry is broken, and spin-orbit coupling is present, causing even single-spin qubits to be susceptible to charge noise. We derive an effective Hamiltonian for the combined action of noise and spin-orbit coupling on a single-spin qubit, identify the mechanisms behind dephasing, and estimate the free induction decay dephasing times T{sub 2}{sup *} for common materials such as Si and GaAs. Dephasing is driven by noise matrix elements that cause relative fluctuations between orbital levels, which are dominated by screened whole charge defects and unscreened dipole defects in the substrate. Dephasing times T{sub 2}{sup *} differ markedly between materials and can be enhanced by increasing gate fields, choosing materials with weak spin-orbit, making dots narrower, or using accumulation dots.

  4. Synchronization of coupled single-electron circuits based on nanoparticles and tunneling junctions

    NASA Astrophysics Data System (ADS)

    Cervera, Javier; Manzanares, José A.; Mafé, Salvador

    2009-04-01

    We explore theoretically the synchronization properties of a device composed of coupled single-electron circuits whose building blocks are nanoparticles interconnected with tunneling junctions. Elementary nanoscillators can be achieved by a single-electron tunneling cell where the relaxation oscillation is induced by the tunneling. We develop a model to describe the synchronization of the nanoscillators and present sample calculations to demonstrate that the idea is feasible and could readily find applications. Instead of considering a particular system, we analyze the general properties of the device making use of an ideal model that emphasizes the essential characteristics of the concept. We define an order parameter for the system as a whole and demonstrate phase synchronization for sufficiently high values of the coupling resistance.

  5. A coupled cluster and Møller-Plesset perturbation theory study of the pressure induced phase transition in the LiH crystal.

    PubMed

    Grüneis, Andreas

    2015-09-14

    We employ Hartree-Fock, second-order Møller-Plesset perturbation, coupled cluster singles and doubles (CCSD) as well as CCSD plus perturbative triples (CCSD(T)) theory to study the pressure induced transition from the rocksalt to the cesium chloride crystal structure in LiH. We show that the calculated transition pressure converges rapidly in this series of increasingly accurate many-electron wave function based theories. Using CCSD(T) theory, we predict a transition pressure for the structural phase transition in the LiH crystal of 340 GPa. Furthermore, we investigate the potential energy surface for this transition in the parameter space of the Buerger path. PMID:26374010

  6. Frequency-dependent nonlinear optical properties with explicitly correlated coupled-cluster response theory using the CCSD(R12) model.

    PubMed

    Neiss, Christian; Hättig, Christof

    2007-04-21

    Response theory up to infinite order is combined with the explicitly correlated coupled-cluster singles and doubles model including linear-r(12) corrections, CCSD(R12). The additional terms introduced by the linear-r(12) contributions, not present in the conventional CCSD calculation, are derived and discussed with respect to the extra costs required for their evaluation. An implementation is presented up to the cubic response function for one-electron perturbations, i.e., up to frequency-dependent second hyperpolarizabilities. As first applications the authors computed the electronic polarizabilities and second hyperpolarizabilities of BH, N(2), and formaldehyde and show that the improvement in the one-electron basis set convergence known from the R12 method for ground state energies is retained for higher-order optical properties. Frequency-dependent results are presented for the second hyperpolarizability of N(2). PMID:17461608

  7. Calculation of P,T-odd interaction constant of PbF using Z-vector method in the relativistic coupled-cluster framework.

    PubMed

    Sasmal, Sudip; Pathak, Himadri; Nayak, Malaya K; Vaval, Nayana; Pal, Sourav

    2015-08-28

    The effective electric field experienced by the unpaired electron in the ground state of PbF, which is a potential candidate in the search of electron electric dipole moment due to some special characteristics, is calculated using Z-vector method in the coupled cluster single- and double- excitation approximation with four component Dirac spinor. This is an important quantity to set the upper bound limit of the electron electric dipole moment. Further, we have calculated molecular dipole moment and parallel magnetic hyperfine structure constant (A‖) of (207)Pb in PbF to test the accuracy of the wavefunction obtained in the Z-vector method. The outcome of our calculations clearly suggests that the core electrons have significant contribution to the "atom in compound" properties. PMID:26328830

  8. Relativistic coupled cluster (RCC) computation of the electric dipole moment enhancement factor of francium due to the violation of time reversal symmetry.

    PubMed

    Mukherjee, Debashis; Sahoo, B K; Nataraj, H S; Das, B P

    2009-11-12

    A relativistic many-body theory for the electric dipole moment (EDM) of paramagnetic atoms arising from the electric dipole moment of the electron is presented and implemented. The relativistic coupled-cluster method with single and double excitations (RCCSD) using the Dirac-Coulomb Hamiltonian and a weak parity and time reversal violating interaction to the first-order of perturbation has been employed to obtain the EDM enhancement factor for the ground state of the Fr atom due to the intrinsic EDM of the electron. The trends of different correlation effects and the leading contributions from different physical states are discussed. Our results in combination with that of the Fr EDM experiment that is currently in progress possess the potential to probe the validity of the standard model (SM) of elementary particle physics. PMID:19795824

  9. Relativistic Coupled Cluster (RCC) Computation of the Electric Dipole Moment Enhancement Factor of Francium Due to the Violation of Time Reversal Symmetry

    NASA Astrophysics Data System (ADS)

    Mukherjee, Debashis; Sahoo, B. K.; Nataraj, H. S.; Das, B. P.

    2009-10-01

    A relativistic many-body theory for the electric dipole moment (EDM) of paramagnetic atoms arising from the electric dipole moment of the electron is presented and implemented. The relativistic coupled-cluster method with single and double excitations (RCCSD) using the Dirac-Coulomb Hamiltonian and a weak parity and time reversal violating interaction to the first-order of perturbation has been employed to obtain the EDM enhancement factor for the ground state of the Fr atom due to the intrinsic EDM of the electron. The trends of different correlation effects and the leading contributions from different physical states are discussed. Our results in combination with that of the Fr EDM experiment that is currently in progress possess the potential to probe the validity of the standard model (SM) of elementary particle physics.

  10. Dynamical transitions in large systems of mean field-coupled Landau-Stuart oscillators: Extensive chaos and cluster states

    SciTech Connect

    Ku, Wai Lim; Girvan, Michelle; Ott, Edward

    2015-12-15

    In this paper, we study dynamical systems in which a large number N of identical Landau-Stuart oscillators are globally coupled via a mean-field. Previously, it has been observed that this type of system can exhibit a variety of different dynamical behaviors. These behaviors include time periodic cluster states in which each oscillator is in one of a small number of groups for which all oscillators in each group have the same state which is different from group to group, as well as a behavior in which all oscillators have different states and the macroscopic dynamics of the mean field is chaotic. We argue that this second type of behavior is “extensive” in the sense that the chaotic attractor in the full phase space of the system has a fractal dimension that scales linearly with N and that the number of positive Lyapunov exponents of the attractor also scales linearly with N. An important focus of this paper is the transition between cluster states and extensive chaos as the system is subjected to slow adiabatic parameter change. We observe discontinuous transitions between the cluster states (which correspond to low dimensional dynamics) and the extensively chaotic states. Furthermore, examining the cluster state, as the system approaches the discontinuous transition to extensive chaos, we find that the oscillator population distribution between the clusters continually evolves so that the cluster state is always marginally stable. This behavior is used to reveal the mechanism of the discontinuous transition. We also apply the Kaplan-Yorke formula to study the fractal structure of the extensively chaotic attractors.

  11. A novel method to estimate the impact parameter on a drift cell by using the information of single ionization clusters

    NASA Astrophysics Data System (ADS)

    Signorelli, G.; D`Onofrio, A.; Venturini, M.

    2016-07-01

    Measuring the time of each ionization cluster in drift chambers has been proposed to improve the single hit resolution, especially for very low mass tracking systems. Ad hoc formulae have been developed to combine the information from the single clusters. We show that the problem falls in a wide category of problems that can be solved with an algorithm called Maximum Possible Spacing (MPS) which has been demonstrated to find the optimal estimator. We show that the MPS approach is applicable and gives the expected results. Its application in a real tracking device, namely the MEG II cylindrical drift chamber, is discussed.

  12. Online Coupling of Flow-Field Flow Fractionation and Single Particle Inductively Coupled Plasma-Mass Spectrometry: Characterization of Nanoparticle Surface Coating Thickness and Aggregation State

    EPA Science Inventory

    Surface coating thickness and aggregation state have strong influence on the environmental fate, transport, and toxicity of engineered nanomaterials. In this study, flow-field flow fractionation coupled on-line with single particle inductively coupled plasma-mass spectrometry i...

  13. Fiber Grating Coupled Light Source Capable of Tunable, Single Frequency Operation

    NASA Technical Reports Server (NTRS)

    Krainak, Michael A. (Inventor); Duerksen, Gary L. (Inventor)

    2001-01-01

    Fiber Bragg grating coupled light sources can achieve tunable single-frequency (single axial and lateral spatial mode) operation by correcting for a quadratic phase variation in the lateral dimension using an aperture stop. The output of a quasi-monochromatic light source such as a Fabry Perot laser diode is astigmatic. As a consequence of the astigmatism, coupling geometries that accommodate the transverse numerical aperture of the laser are defocused in the lateral dimension, even for apsherical optics. The mismatch produces the quadratic phase variation in the feedback along the lateral axis at the facet of the laser that excites lateral modes of higher order than the TM(sub 00). Because the instability entails excitation of higher order lateral submodes, single frequency operation also is accomplished by using fiber Bragg gratings whose bandwidth is narrower than the submode spacing. This technique is particularly pertinent to the use of lensed fiber gratings in lieu of discrete coupling optics. Stable device operation requires overall phase match between the fed-back signal and the laser output. The fiber Bragg grating acts as a phase-preserving mirror when the Bragg condition is met precisely. The phase-match condition is maintained throughout the fiber tuning range by matching the Fabry-Perot axial mode wavelength to the passband center wavelength of the Bragg grating.

  14. Addition by subtraction in coupled cluster theory. II. Equation-of-motion coupled cluster method for excited, ionized, and electron-attached states based on the nCC ground state wave function

    NASA Astrophysics Data System (ADS)

    Musiał, Monika; Bartlett, Rodney J.

    2007-07-01

    New iterative double and triple excitation corrections to the equation-of-motion coupled cluster (EOM-CC) based upon the recently developed nCC methods [Bartlett and Musiał, J. Chem. Phys. 125, 204105-1 (2006)] are applied to excitation energies (EEs), ionization potentials (IPs), and electron affinities (EAs). The methods have been tested by the evaluation of the vertical EEs, IPs, and EAs for Ne, BH, CH2, H2O, N2, C2, CH+, CO, and C2H4 compared to full configuration interaction, EOM-CCSD, EOM-CCSDT, and experimental data.

  15. Cotunneling signatures of spin-electric coupling in frustrated triangular single-molecule magnets

    NASA Astrophysics Data System (ADS)

    Nossa, Javier; Canali, Carlo

    2013-03-01

    The ground state (GS) of frustrated (antiferromagnetic) triangular single-molecule magnets is characterized by two total-spin S = 1 /2 doublets with opposite chirality. According to a group theory analysis [M. Trif et al., Phys. Rev. Lett. 101, 217201 (2008)] an external electric field can efficiently couple these two chiral spin states, even when the spin-orbit interaction (SOI) is absent. The strength of this coupling, d, is determined by an off-diagonal matrix element of the dipole operator, which can be calculated by ab-initio methods [M. F. Islam et al., Phys. Rev. B 82, 155446 (2010)]. In this work we propose that Coulomb-blockade transport experiments in the cotunneling regime can provide a direct way to determine the spin-electric coupling strength. Indeed, an electric field generates a d-dependent splitting of the GS manifold, which can be detected in the inelastic cotunneling conductance. Our theoretical analysis is supported by master-equation calculations of quantum transport in the cotunneling regime. We employ a Hubbard-model approach to elucidate the relationship between the Hubbard parameters t and U, and the spin-electric coupling constant d . This allows us to predict the regime in which the coupling constant d can be extracted from experiment.

  16. Single- and coupled-channel radial inverse scattering with supersymmetric transformations

    NASA Astrophysics Data System (ADS)

    Baye, Daniel; Sparenberg, Jean-Marc; Pupasov-Maksimov, Andrey M.; Samsonov, Boris F.

    2014-06-01

    The present status of the three-dimensional inverse-scattering method with supersymmetric transformations is reviewed for the coupled-channel case. We first revisit in a pedagogical way the single-channel case, where the supersymmetric approach is shown to provide a complete, efficient and elegant solution to the inverse-scattering problem for the radial Schrödinger equation with short-range interactions. A special emphasis is put on the differences between conservative and non-conservative transformations, i.e. transformations that do or do not conserve the behaviour of solutions of the radial Schrödinger equation at the origin. In particular, we show that for the zero initial potential, a non-conservative transformation is always equivalent to a pair of conservative transformations. These single-channel results are illustrated on the inversion of the neutron-proton triplet eigenphase shifts for the S- and D-waves. We then summarize and extend our previous works on the coupled-channel case, i.e. on systems of coupled radial Schrödinger equations, and stress remaining difficulties and open questions of this problem by putting it in perspective with the single-channel case. We mostly concentrate on two-channel examples to illustrate general principles while keeping mathematics as simple as possible. In particular, we discuss the important difference between the equal-threshold and different-threshold problems. For equal thresholds, conservative transformations can provide non-diagonal Jost and scattering matrices. Iterations of such transformations in the two-channel case are studied and shown to lead to practical algorithms for inversion. A convenient particular technique where the mixing parameter can be fitted without modifying the eigenphases is developed with iterations of pairs of conjugate transformations. This technique is applied to the neutron-proton triplet S-D scattering matrix, for which exactly-solvable matrix potential models are constructed. For

  17. Nuclear-driven electron spin rotations in a coupled silicon quantum dot and single donor system

    NASA Astrophysics Data System (ADS)

    Harvey-Collard, Patrick; Jacobson, Noah Tobias; Rudolph, Martin; Ten Eyck, Gregory A.; Wendt, Joel R.; Pluym, Tammy; Lilly, Michael P.; Pioro-Ladrière, Michel; Carroll, Malcolm S.

    Single donors in silicon are very good qubits. However, a central challenge is to couple them to one another. To achieve this, many proposals rely on using a nearby quantum dot (QD) to mediate an interaction. In this work, we demonstrate the coherent coupling of electron spins between a single 31P donor and an enriched 28Si metal-oxide-semiconductor few-electron QD. We show that the electron-nuclear spin interaction can drive coherent rotations between singlet and triplet electron spin states. Moreover, we are able to tune electrically the exchange interaction between the QD and donor electrons. The combination of single-nucleus-driven rotations and voltage-tunable exchange provides all elements for future all-electrical control of a spin qubit, and requires only a single dot and no additional magnetic field gradients. This work was performed, in part, at the Center for Integrated Nanotechnologies, an Office of Science User Facility operated for the U.S. Department of Energy (DOE) Office of Science. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. DOE's National Nuclear Security Administration under Contract DE-AC04-94AL85000.

  18. Ultrafast Room-Temperature Single Photon Emission from Quantum Dots Coupled to Plasmonic Nanocavities.

    PubMed

    Hoang, Thang B; Akselrod, Gleb M; Mikkelsen, Maiken H

    2016-01-13

    Efficient and bright single photon sources at room temperature are critical components for quantum information systems such as quantum key distribution, quantum state teleportation, and quantum computation. However, the intrinsic radiative lifetime of quantum emitters is typically ∼10 ns, which severely limits the maximum single photon emission rate and thus entanglement rates. Here, we demonstrate the regime of ultrafast spontaneous emission (∼10 ps) from a single quantum emitter coupled to a plasmonic nanocavity at room temperature. The nanocavity integrated with a single colloidal semiconductor quantum dot produces a 540-fold decrease in the emission lifetime and a simultaneous 1900-fold increase in the total emission intensity. At the same time, the nanocavity acts as a highly efficient optical antenna directing the emission into a single lobe normal to the surface. This plasmonic platform is a versatile geometry into which a variety of other quantum emitters, such as crystal color centers, can be integrated for directional, room-temperature single photon emission rates exceeding 80 GHz. PMID:26606001

  19. Reconfigurable task-dependent functional coupling modes cluster around a core functional architecture

    PubMed Central

    Krienen, Fenna M.; Yeo, B. T. Thomas; Buckner, Randy L.

    2014-01-01

    Functional coupling across distributed brain regions varies across task contexts, yet there are stable features. To better understand the range and central tendencies of network configurations, coupling patterns were explored using functional MRI (fMRI) across 14 distinct continuously performed task states ranging from passive fixation to increasingly demanding classification tasks. Mean global correlation profiles across the cortex ranged from 0.69 to 0.82 between task states. Network configurations from both passive fixation and classification tasks similarly predicted task coactivation patterns estimated from meta-analysis of the literature. Thus, even across markedly different task states, central tendencies dominate the coupling configurations. Beyond these shared components, distinct task states displayed significant differences in coupling patterns in response to their varied demands. One possibility is that anatomical connectivity provides constraints that act as attractors pulling network configurations towards a limited number of robust states. Reconfigurable coupling modes emerge as significant modifications to a core functional architecture. PMID:25180304

  20. Chimera and phase-cluster states in populations of coupled chemical oscillators

    NASA Astrophysics Data System (ADS)

    Tinsley, Mark R.; Nkomo, Simbarashe; Showalter, Kenneth

    2012-09-01

    Populations of coupled oscillators may exhibit two coexisting subpopulations, one with synchronized oscillations and the other with unsynchronized oscillations, even though all of the oscillators are coupled to each other in an equivalent manner. This phenomenon, discovered about ten years ago in theoretical studies, was then further characterized and named the chimera state after the Greek mythological creature made up of different animals. The highly counterintuitive coexistence of coherent and incoherent oscillations in populations of identical oscillators, each with an equivalent coupling structure, inspired great interest and a flurry of theoretical activity. Here we report on experimental studies of chimera states and their relation to other synchronization states in populations of coupled chemical oscillators. Our experiments with coupled Belousov-Zhabotinsky oscillators and corresponding simulations reveal chimera behaviour that differs significantly from the behaviour found in theoretical studies of phase-oscillator models.

  1. Communication: Two-component ring-coupled-cluster computation of the correlation energy in the random-phase approximation

    SciTech Connect

    Krause, Katharina; Klopper, Wim

    2013-11-21

    Within the framework of density-functional theory, the correlation energy is computed in the random-phase approximation (RPA) using spinors obtained from a two-component relativistic Kohn–Sham calculation accounting for spin–orbit interactions. Ring-coupled-cluster equations are solved to obtain the two-component RPA correlation energy. Results are presented for the hydrides of the halogens Br, I, and At as well as of the coinage metals Cu, Ag, and Au, based on two-component relativistic exact-decoupling Kohn–Sham calculations.

  2. Communication: Two-component ring-coupled-cluster computation of the correlation energy in the random-phase approximation

    NASA Astrophysics Data System (ADS)

    Krause, Katharina; Klopper, Wim

    2013-11-01

    Within the framework of density-functional theory, the correlation energy is computed in the random-phase approximation (RPA) using spinors obtained from a two-component relativistic Kohn-Sham calculation accounting for spin-orbit interactions. Ring-coupled-cluster equations are solved to obtain the two-component RPA correlation energy. Results are presented for the hydrides of the halogens Br, I, and At as well as of the coinage metals Cu, Ag, and Au, based on two-component relativistic exact-decoupling Kohn-Sham calculations.

  3. Electrical coupling in ensembles of nonexcitable cells: modeling the spatial map of single cell potentials.

    PubMed

    Cervera, Javier; Manzanares, Jose Antonio; Mafe, Salvador

    2015-02-19

    We analyze the coupling of model nonexcitable (non-neural) cells assuming that the cell membrane potential is the basic individual property. We obtain this potential on the basis of the inward and outward rectifying voltage-gated channels characteristic of cell membranes. We concentrate on the electrical coupling of a cell ensemble rather than on the biochemical and mechanical characteristics of the individual cells, obtain the map of single cell potentials using simple assumptions, and suggest procedures to collectively modify this spatial map. The response of the cell ensemble to an external perturbation and the consequences of cell isolation, heterogeneity, and ensemble size are also analyzed. The results suggest that simple coupling mechanisms can be significant for the biophysical chemistry of model biomolecular ensembles. In particular, the spatiotemporal map of single cell potentials should be relevant for the uptake and distribution of charged nanoparticles over model cell ensembles and the collective properties of droplet networks incorporating protein ion channels inserted in lipid bilayers. PMID:25622192

  4. Quantum Yield of Single Surface Plasmons Generated by a Quantum Dot Coupled with a Silver Nanowire.

    PubMed

    Li, Qiang; Wei, Hong; Xu, Hongxing

    2015-12-01

    The interactions between surface plasmons (SPs) in metal nanostructures and excitons in quantum emitters (QEs) lead to many interesting phenomena and potential applications that are strongly dependent on the quantum yield of SPs. The difficulty in distinguishing all the possible exciton recombination channels hinders the experimental determination of SP quantum yield. Here, we experimentally measured for the first time the quantum yield of single SPs generated by the exciton-plasmon coupling in a system composed of a single quantum dot and a silver nanowire (NW). By utilizing the SP guiding property of the NW, the decay rates of all the exciton recombination channels, i.e., direct free space radiation channel, SP generation channel, and nonradiative damping channel, are quantitatively obtained. It is determined that the optimum emitter-NW coupling distance for the largest SP quantum yield is about 10 nm, resulting from the different distance-dependent decay rates of the three channels. These results are important for manipulating the coupling between plasmonic nanostructures and QEs and developing on-chip quantum plasmonic devices for potential nanophotonic and quantum information applications. PMID:26583200

  5. Digital DC-Reconstruction of AC-Coupled Electrophysiological Signals with a Single Inverting Filter

    PubMed Central

    Schmid, Ramun; Leber, Remo; Schmid, Hans-Jakob; Generali, Gianluca

    2016-01-01

    Since the introduction of digital electrocardiographs, high-pass filters have been necessary for successful analog-to-digital conversion with a reasonable amplitude resolution. On the other hand, such high-pass filters may distort the diagnostically significant ST-segment of the ECG, which can result in a misleading diagnosis. We present an inverting filter that successfully undoes the effects of a 0.05 Hz single pole high-pass filter. The inverting filter has been tested on more than 1600 clinical ECGs with one-minute durations and produces a negligible mean RMS-error of 3.1*10−8 LSB. Alternative, less strong inverting filters have also been tested, as have different applications of the filters with respect to rounding of the signals after filtering. A design scheme for the alternative inverting filters has been suggested, based on the maximum strength of the filter. With the use of the suggested filters, it is possible to recover the original DC-coupled ECGs from AC-coupled ECGs, at least when a 0.05 Hz first order digital single pole high-pass filter is used for the AC-coupling. PMID:26938769

  6. Properties Data for Adhesion and Surface Chemistry of Aluminum: Sapphire-Aluminum, Single-Crystal Couple

    NASA Technical Reports Server (NTRS)

    Miyoshi, Kazuhisa; Pohlchuck, Bobby; Whitle, Neville C.; Hector, Louis G., Jr.; Adams, Jim

    1998-01-01

    An investigation was conducted to examine the adhesion and surface chemistry of single-crystal aluminum in contact with single-crystal sapphire (alumina). Pull-off force (adhesion) measurements were conducted under loads of 0. I to I mN in a vacuum of 10(exp -1) to 10(exp -9) Pa (approx. 10(exp -10) to 10(exp -11) torr) at room temperature. An Auger electron spectroscopy analyzer incorporated directly into an adhesion-measuring vacuum system was primarily used to define the chemical nature of the surfaces before and after adhesion measurements. The surfaces were cleaned by argon ion sputtering. With a clean aluminum-clean -sapphire couple the mean value and standard deviation of pull-off forces required to separate the surfaces were 3015 and 298 micro-N, respectively. With a contaminated aluminum-clean sapphire couple these values were 231 and 241 micro-N. The presence of a contaminant film on the aluminum surface reduced adhesion by a factor of 13. Therefore, surfaces cleanliness, particularly aluminum cleanliness, played an important role in the adhesion of the aluminum-sapphire couples. Pressures on the order of 10(exp -8) to 10(exp -9) Pa (approx. 10(exp -10) to 10(exp -11) torr) maintained a clean aluminum surface for only a short time (less then 1 hr) but maintained a clean sapphire surface, once it was achieved, for a much longer time.

  7. Construction of diabatic Hamiltonian matrix from ab initio calculated molecular symmetry adapted nonadiabatic coupling terms and nuclear dynamics for the excited states of Na3 cluster.

    PubMed

    Mukherjee, Saikat; Bandyopadhyay, Sudip; Paul, Amit Kumar; Adhikari, Satrajit

    2013-04-25

    We present the molecular symmetry (MS) adapted treatment of nonadiabatic coupling terms (NACTs) for the excited electronic states (2(2)E' and 1(2)A1') of Na3 cluster, where the adiabatic potential energy surfaces (PESs) and the NACTs are calculated at the MRCI level by using an ab initio quantum chemistry package (MOLPRO). The signs of the NACTs at each point of the configuration space (CS) are determined by employing appropriate irreducible representations (IREPs) arising due to MS group, and such terms are incorporated into the adiabatic to diabatic transformation (ADT) equations to obtain the ADT angles. Since those sign corrected NACTs and the corresponding ADT angles demonstrate the validity of curl condition for the existence of three-state (2(2)E' and 1(2)A1') sub-Hilbert space, it becomes possible to construct the continuous, single-valued, symmetric, and smooth 3 × 3 diabatic Hamiltonian matrix. Finally, nuclear dynamics has been carried out on such diabatic surfaces to explore whether our MS-based treatment of diabatization can reproduce the pattern of the experimental spectrum for system B of Na3 cluster. PMID:23521047

  8. Traceable calibration of a fibre-coupled superconducting nano-wire single photon detector using characterized synchrotron radiation

    NASA Astrophysics Data System (ADS)

    Müller, Ingmar; Klein, Roman M.; Werner, Lutz

    2014-12-01

    Radiometric calibrations of fibre-coupled single photon detectors are experiencing growing demand, especially at the telecommunication wavelengths. In this paper, the radiometric calibration of a fibre-coupled superconducting nano-wire single photon detector at the telecom wavelength 1.55 µm by means of well-characterized synchrotron radiation is described. This substitution method is based on the unique properties of synchrotron radiation and the Metrology Light Source, the dedicated electron storage ring of the Physikalisch-Technische Bundesanstalt, and is suitable for fibre-coupled single photon detectors. The Metrology Light Source is used as a light source with a high dynamic range of the radiant power to bridge the radiometric gap occurring in the transition from radiant power measurements and the counting of photons with single photon detectors. Very low uncertainties below 2% have been achieved in the measurement of the detection efficiency of a fibre-coupled superconducting nano-wire single photon detector.

  9. Tunable, continuous-wave single-resonant optical parametric oscillator with output coupling for resonant wave

    NASA Astrophysics Data System (ADS)

    Xiong-Hua, Zheng; Bao-Fu, Zhang; Zhong-Xing, Jiao; Biao, Wang

    2016-01-01

    We present a continuous-wave singly-resonant optical parametric oscillator with 1.5% output coupling of the resonant signal wave, based on an angle-polished MgO-doped periodically poled lithium niobate (MgO:PPLN), pumped by a commercial Nd:YVO4 laser at 1064 nm. The output-coupled optical parametric oscillator delivers a maximum total output power of 4.19 W with 42.8% extraction efficiency, across a tuning range of 1717 nm in the near- and mid-infrared region. This indicates improvements of 1.87 W in output power, 19.1% in extraction efficiency and 213 nm in tuning range extension in comparison with the optical parametric oscillator with no output coupling, while at the expense of increasing the oscillation threshold by a factor of ˜ 2. Moreover, it is confirmed that the finite output coupling also contributes to the reduction of the thermal effects in crystal. Project supported by the National Natural Science Foundation of China (Grant Nos. 61308056, 11204044, 11232015, and 11072271), the Research Fund for the Doctoral Program of Higher Education of China (Grant Nos. 20120171110005 and 20130171130003), the Fundamental Research Funds for the Central Universities of China (Grant No. 14lgpy07), and the Opening Project of Science and Technology on Reliability Physics and Application Technology of Electronic Component Laboratory, China (Grant No. ZHD201203).

  10. Single-polaron properties for double-well electron-phonon coupling

    NASA Astrophysics Data System (ADS)

    Adolphs, Clemens; Berciu, Mona

    2014-03-01

    We introduce a new model to describe electron-phonon coupling in systems such as one-dimensional intercalated chains or two-dimensional CuO2 planes, where symmetry dictates that the linear coupling term vanishes. We show that, under certain conditions, an additional charge carrier dynamically changes the local lattice potential from a harmonic well into a double well. We use the Momentum Average approximation to study the properties of this model in the single-polaron limit. A detailed analysis reveals that despite some qualitative similarities to the linear Holstein model, a renormalized Holstein model cannot account for all of the physics of the double-well model. We thank NSERC and QMI for financial support.

  11. Exact Computation of Probability Landscape of Stochastic Networks of Single Input and Coupled Toggle Switch Modules

    PubMed Central

    Terebus, Anna; Cao, Youfang; Liang, Jie

    2016-01-01

    Gene regulatory networks depict the interactions between genes, proteins, and other components of the cell. These interactions often are stochastic that can influence behavior of the cells. Discrete Chemical Master Equation (dCME) provides a general framework for understanding the stochastic nature of these networks. However solving dCME is challenging due to the enormous state space, one effective approach is to study the behavior of individual modules of the stochastic network. Here we used the finite buffer dCME method and directly calculated the exact steady state probability landscape for the two stochastic networks of Single Input and Coupled Toggle Switch Modules. The first example is a switch network consisting of three genes, and the second example is a double switching network consisting of four coupled genes. Our results show complex switching behavior of these networks can be quantified. PMID:25571172

  12. Strong coupling and stimulated emission in single parabolic quantum well microcavity for terahertz cascade

    SciTech Connect

    Tzimis, A.; Savvidis, P. G.; Trifonov, A. V.; Ignatiev, I. V.; Christmann, G.; Tsintzos, S. I.; Hatzopoulos, Z.; Kavokin, A. V.

    2015-09-07

    We report observation of strong light-matter coupling in an AlGaAs microcavity (MC) with an embedded single parabolic quantum well. The parabolic potential is achieved by varying aluminum concentration along the growth direction providing equally spaced energy levels, as confirmed by Brewster angle reflectivity from a reference sample without MC. It acts as an active region of the structure which potentially allows cascaded emission of terahertz (THz) light. Spectrally and time resolved pump-probe spectroscopy reveals characteristic quantum beats whose frequencies range from 0.9 to 4.5 THz, corresponding to energy separation between relevant excitonic levels. The structure exhibits strong stimulated nonlinear emission with simultaneous transition to weak coupling regime. The present study highlights the potential of such devices for creating cascaded relaxation of bosons, which could be utilized for THz emission.

  13. DISCOVERY OF A POSSIBLY SINGLE BLUE SUPERGIANT STAR IN THE INTRA-CLUSTER REGION OF VIRGO CLUSTER OF GALAXIES

    SciTech Connect

    Ohyama, Youichi; Hota, Ananda

    2013-04-20

    IC 3418 is a dwarf irregular galaxy falling into the Virgo cluster, and a 17 kpc long trail is seen behind the galaxy, which is considered to have formed due to ram pressure stripping. The trail contains compact knots and diffuse blobs of ultraviolet and blue optical emission and, thus, it is a clear site of recent star formation but in an unusual environment, surrounded by a million degree intra-cluster medium. We report on our optical spectroscopy of a compact source in the trail, SDSS J122952.66+112227.8, and show that the optical spectrum is dominated by emission from a massive blue supergiant star. If confirmed, our report would mark the farthest star with spectroscopic observation. We interpret that a massive O-type star formed in situ in the trail has evolved recently out of the main sequence into this blue supergiant phase, and now lacks any detectable spectral sign of its associated H II region. We argue that turbulence within the ram pressure striped gaseous trail may play a dominant role for the star formation within such trails.

  14. Four-electron deoxygenative reductive coupling of carbon monoxide at a single metal site

    NASA Astrophysics Data System (ADS)

    Buss, Joshua A.; Agapie, Theodor

    2016-01-01

    Carbon dioxide is the ultimate source of the fossil fuels that are both central to modern life and problematic: their use increases atmospheric levels of greenhouse gases, and their availability is geopolitically constrained. Using carbon dioxide as a feedstock to produce synthetic fuels might, in principle, alleviate these concerns. Although many homogeneous and heterogeneous catalysts convert carbon dioxide to carbon monoxide, further deoxygenative coupling of carbon monoxide to generate useful multicarbon products is challenging. Molybdenum and vanadium nitrogenases are capable of converting carbon monoxide into hydrocarbons under mild conditions, using discrete electron and proton sources. Electrocatalytic reduction of carbon monoxide on copper catalysts also uses a combination of electrons and protons, while the industrial Fischer-Tropsch process uses dihydrogen as a combined source of electrons and electrophiles for carbon monoxide coupling at high temperatures and pressures. However, these enzymatic and heterogeneous systems are difficult to probe mechanistically. Molecular catalysts have been studied extensively to investigate the elementary steps by which carbon monoxide is deoxygenated and coupled, but a single metal site that can efficiently induce the required scission of carbon-oxygen bonds and generate carbon-carbon bonds has not yet been documented. Here we describe a molybdenum compound, supported by a terphenyl-diphosphine ligand, that activates and cleaves the strong carbon-oxygen bond of carbon monoxide, enacts carbon-carbon coupling, and spontaneously dissociates the resulting fragment. This complex four-electron transformation is enabled by the terphenyl-diphosphine ligand, which acts as an electron reservoir and exhibits the coordinative flexibility needed to stabilize the different intermediates involved in the overall reaction sequence. We anticipate that these design elements might help in the development of efficient catalysts for

  15. Four-electron deoxygenative reductive coupling of carbon monoxide at a single metal site.

    PubMed

    Buss, Joshua A; Agapie, Theodor

    2016-01-01

    Carbon dioxide is the ultimate source of the fossil fuels that are both central to modern life and problematic: their use increases atmospheric levels of greenhouse gases, and their availability is geopolitically constrained. Using carbon dioxide as a feedstock to produce synthetic fuels might, in principle, alleviate these concerns. Although many homogeneous and heterogeneous catalysts convert carbon dioxide to carbon monoxide, further deoxygenative coupling of carbon monoxide to generate useful multicarbon products is challenging. Molybdenum and vanadium nitrogenases are capable of converting carbon monoxide into hydrocarbons under mild conditions, using discrete electron and proton sources. Electrocatalytic reduction of carbon monoxide on copper catalysts also uses a combination of electrons and protons, while the industrial Fischer-Tropsch process uses dihydrogen as a combined source of electrons and electrophiles for carbon monoxide coupling at high temperatures and pressures. However, these enzymatic and heterogeneous systems are difficult to probe mechanistically. Molecular catalysts have been studied extensively to investigate the elementary steps by which carbon monoxide is deoxygenated and coupled, but a single metal site that can efficiently induce the required scission of carbon-oxygen bonds and generate carbon-carbon bonds has not yet been documented. Here we describe a molybdenum compound, supported by a terphenyl-diphosphine ligand, that activates and cleaves the strong carbon-oxygen bond of carbon monoxide, enacts carbon-carbon coupling, and spontaneously dissociates the resulting fragment. This complex four-electron transformation is enabled by the terphenyl-diphosphine ligand, which acts as an electron reservoir and exhibits the coordinative flexibility needed to stabilize the different intermediates involved in the overall reaction sequence. We anticipate that these design elements might help in the development of efficient catalysts for

  16. A study on synaptic coupling between single orofacial mechanoreceptors and human masseter muscle.

    PubMed

    Türker, Kemal S; Johnsen, Skjalg E; Sowman, Paul F; Trulsson, Mats

    2006-04-01

    The connection between individual orofacial mechanoreceptive afferents and the motoneurones that innervate jaw muscles is not well established. For example, although electrical and mechanical stimulation of orofacial afferents in bulk evokes responses in the jaw closers, whether similar responses can be evoked in the jaw muscles from the discharge of type identified single orofacial mechanoreceptive afferents is not known. Using tungsten microelectrodes, we have recorded from 28 afferents in the inferior alveolar nerve and 21 afferents in the lingual nerve of human volunteers. We have used discharges of single orofacial afferents as the triggers and the electromyogram (EMG) of the masseter as the source to generate spike-triggered averaged records to illustrate time-based EMG modulation by the nerve discharge. We have then used cross correlation analysis to quantify the coupling. Furthermore, we have also used coherence analysis to study frequency-based relationship between the nerve spike trains and the EMG. The discharge patterns of the skin and mucosa receptors around the lip and the gingiva generated significant modulation in EMGs with a success rate of 40% for both cross correlation and coherence analyses. The discharge patterns of the periodontal mechanoreceptors (PMRs) generated more coupling with a success rate of 70% for cross correlation and about 35% for coherence analyses. Finally, the discharges of the tongue receptors displayed significant coupling with the jaw muscle motoneurones with a success rate of about 40% for both analyses. Significant modulation of the jaw muscles by single orofacial receptors suggests that they play important roles in controlling the jaw muscle activity so that mastication and speech functions are executed successfully. PMID:16328261

  17. Convergent close-coupling calculations of helium single ionization by antiproton impact

    SciTech Connect

    Abdurakhmanov, I. B.; Kadyrov, A. S.; Fursa, D. V.; Bray, I.; Stelbovics, A. T.

    2011-12-15

    We apply the fully quantum-mechanical convergent close-coupling method to the calculation of antiproton scattering on the ground state of helium. The helium target is treated as a three-body Coulomb system using frozen-core and multiconfiguration approximations. The electron-electron correlation of the target is fully treated in both cases. Though both calculations yield generally good agreement with experiment for the total ionization cross sections, the multiconfiguration results are substantially higher at the lower energies than the frozen-core ones. Calculated longitudinal ejected electron and recoil-ion momentum distributions for the single ionization of helium are in good agreement with the experiment.

  18. Self-referenced characterization of space–time couplings in near-single-cycle laser pulses

    NASA Astrophysics Data System (ADS)

    Witting, T.; Austin, D. R.; Barillot, T.; Greening, D.; Matia-Hernando, P.; Walke, D.; Marangos, J. P.; Tisch, J. W. G.

    2016-05-01

    We report on the characterization of space-time couplings in high energy sub-2-cycle 770nm laser pulses using a self-referencing single-shot method. Using spatially-encoded arrangement filter-based spectral phase interferometry for direct electric fi?eld reconstruction (SEA-F-SPIDER) we characterize few-cycle pulses with a wave-front rotation of 2.8x?10^11 rev/sec (1.38 mrad per half-cycle) and pulses with pulse front tilts ranging from to -0.33 fs/um to -3.03 fs/um.

  19. Self-referenced characterization of space-time couplings in near-single-cycle laser pulses.

    PubMed

    Witting, T; Austin, D R; Barillot, T; Greening, D; Matia-Hernando, P; Walke, D; Marangos, J P; Tisch, J W G

    2016-05-15

    We report on the characterization of space-time couplings in high-energy sub-2-cycle 770 nm laser pulses using a self-referencing single-frame method. Using spatially encoded arrangement filter-based spectral phase interferometry for direct electric field reconstruction, we characterize few-cycle pulses with a wavefront rotation of 2.8×1011  rev/s (1.38 mrad per half-cycle) and pulses with pulse front tilts ranging from -0.33  fs/μm to -3.03  fs/μm in the focus. PMID:27177008

  20. Coupled-cavity terahertz quantum cascade lasers for single mode operation

    SciTech Connect

    Li, H. Manceau, J. M.; Andronico, A.; Jagtap, V.; Sirtori, C.; Barbieri, S.; Li, L. H.; Linfield, E. H.; Davies, A. G.

    2014-06-16

    We demonstrate the operation of coupled-cavity terahertz frequency quantum-cascade lasers composed of two sub-cavities separated by an air gap realized by optical lithography and dry etching. This geometry allows stable, single mode operation with typical side mode suppression ratios in the 30–40 dB range. We employ a transfer matrix method to model the mode selection mechanism. The obtained results are in good agreement with the measurements and allow prediction of the operating frequency.

  1. Coupled cluster investigation on the thermochemistry of dimethyl sulphide, dimethyl disulphide and their dissociation products: the problem of the enthalpy of formation of atomic sulphur

    NASA Astrophysics Data System (ADS)

    Denis, Pablo A.

    2014-04-01

    By means of coupled cluster theory and correlation consistent basis sets we investigated the thermochemistry of dimethyl sulphide (DMS), dimethyl disulphide (DMDS) and four closely related sulphur-containing molecules: CH3SS, CH3S, CH3SH and CH3CH2SH. For the four closed-shell molecules studied, their enthalpies of formation (EOFs) were derived using bomb calorimetry. We found that the deviation of the EOF with respect to experiment was 0.96, 0.65, 1.24 and 1.29 kcal/mol, for CH3SH, CH3CH2SH, DMS and DMDS, respectively, when ΔHf,0 = 65.6 kcal/mol was utilised (JANAF value). However, if the recently proposed ΔHf,0 = 66.2 kcal/mol was used to estimate EOF, the errors dropped to 0.36, 0.05, 0.64 and 0.09 kcal/mol, respectively. In contrast, for the CH3SS radical, a better agreement with experiment was obtained if the 65.6 kcal/mol value was used. To compare with experiment avoiding the problem of the ΔHf,0 (S), we determined the CH3-S and CH3-SS bond dissociation energies (BDEs) in CH3S and CH3SS. At the coupled cluster with singles doubles and perturbative triples correction level of theory, these values are 48.0 and 71.4 kcal/mol, respectively. The latter BDEs are 1.5 and 1.2 kcal/mol larger than the experimental values. The agreement can be considered to be acceptable if we take into consideration that these two radicals present important challenges when determining their EOFs. It is our hope that this work stimulates new studies which help elucidate the problem of the EOF of atomic sulphur.

  2. Work life and mental well-being: single and coupled employed mothers in Southern Europe and Scandinavia.

    PubMed

    Bull, Torill

    2009-09-01

    Many European mothers, single and coupled, combine work outside the home and family life. The effects of this on their mental well-being may vary depending on the level of support available from the State's welfare system, since welfare may buffer working mothers from some of the stress that can arise from trying to manage significant responsibilities on the job and at home. Welfare may be especially important for single working mothers, for whom the burden of multiple roles may be even heavier. The present study assessed levels and predictors of well-being of single and coupled employed mothers in Greece, Portugal and Spain, where welfare support is relatively limited. Results were compared to a parallel study with data from Denmark, Norway and Sweden, where welfare support is relatively comprehensive. Coupled mothers in Scandinavia had significantly lower financial hardship, longer education, higher life satisfaction, more enriching jobs, practical support, financial support and social participation than coupled mothers in the Southern European sample. On the other hand, the Scandinavian coupled mothers had higher levels of work family conflict than coupled mothers in Southern Europe. Single mothers in Scandinavia, compared to single mothers in Southern Europe, had significantly longer education, higher life satisfaction and positive affect, more enriching jobs, confidant support, practical support, financial support and social participation. Level of job stress was the same for all mother groups. All groups differed significantly from each other in level of financial hardship, with Scandinavian coupled mothers being best off, followed by Scandinavian single mothers, Southern European coupled mothers, and Southern European single mothers. The regional differences suggest that single motherhood per se need not be a risk factor for poorer well-being, and that welfare policies may have a protective effect for the mental well-being of single mothers. PMID:19773296

  3. The early phases of galaxy clusters formation in IR: coupling hydrodynamical simulations with GRASIL-3D

    NASA Astrophysics Data System (ADS)

    Granato, Gian Luigi; Ragone-Figueroa, Cinthia; Domínguez-Tenreiro, Rosa; Obreja, Aura; Borgani, Stefano; De Lucia, Gabriella; Murante, Giuseppe

    2015-06-01

    We compute and study the infrared and sub-mm properties of high-redshift (z ≳ 1) simulated clusters and protoclusters. The results of a large set of hydrodynamical zoom-in simulations including active galactic nuclei (AGN) feedback, have been treated with the recently developed radiative transfer code GRASIL-3D, which accounts for the effect of dust reprocessing in an arbitrary geometry. Here, we have slightly generalized the code to adapt it to the present purpose. Then we have post-processed boxes of physical size 2 Mpc encompassing each of the 24 most massive clusters identified at z = 0, at several redshifts between 0.5 and 3, producing IR and sub-mm mock images of these regions and spectral energy distributions (SEDs) of the radiation coming out from them. While this field is in its infancy from the observational point of view, rapid development is expected in the near future thanks to observations performed in the far-IR and sub-mm bands. Notably, we find that in this spectral regime our prediction are little affected by the assumption required by this post-processing, and the emission is mostly powered by star formation (SF) rather than accretion on to super massive black hole (SMBH). The comparison with the little observational information currently available, highlights that the simulated cluster regions never attain the impressive star formation rates suggested by these observations. This problem becomes more intriguing taking into account that the brightest cluster galaxies (BCGs) in the same simulations turn out to be too massive. It seems that the interplay between the feedback schemes and the star formation model should be revised, possibly incorporating a positive feedback mode.

  4. Electromechanical properties of high coupling single crystals under large electric drive and uniaxial compression.

    PubMed

    Amin, Ahmed

    2005-10-01

    This work investigates the 33-mode electromechanical response of relaxor-ferroelectric lead magnesium niobate-lead titanate (PMN-PT) single crystals when driven with large fields approximately 0.4 MV/m under a combined direct current (DC) field and mechanical bias similar to those used in the design of sound projectors. It demonstrates that the remarkable small signal length extensional coupling (k33 > 0.90) and other electromechanical properties of morphotropic PMN-PT single crystals prevail under large drive. The observed k33 roll-off at 42 MPa compressive stress is analyzed in terms of the recent structural data and the high-order Devonshire theory of possible ferroelectric-ferroelectric transition trajectories. PMID:16382615

  5. The earth-coupled heat pump: Utilizing innovative technology in single family rehabilitation strategies

    SciTech Connect

    Not Available

    1989-11-01

    The study examines the feasibility of incorporating the use of earth-coupled heat pump technology in single-family housing rehabilitation projects, based on energy conservation attributes and financial considerations. Following evaluation of a theoretical model which indicated that installations of the heat pumps were feasible, the heat pumps were tested under actual conditions in five single family housing units which were part of the Urban Homesteading Program, and were matched with comparable units which did not receive special treatment. Energy consumption information was collected for all units for twelve months. Variables were identified, and the data was analyzed for individual housing units and compared with the results predicted by the theoretical model to determine the practicality of incorporating such technology in large scale rehabilitation projects. 14 refs., 14 figs., 3 tabs.

  6. High-efficiency optical coupling single-sideband modulation for OFDM-RoF-PON systems

    NASA Astrophysics Data System (ADS)

    Xue, Xuwei; Ji, Wei; Kang, Zhaoyuan; Huang, Kangrui; Li, Xiao

    2015-12-01

    We report on an OFDM-RoF-PON system based on novel optical coupling single-sideband (O-SSB) modulation for one wavelength carrying one baseband and two radio frequency (RF) signals. The impact of nonlinear distortion consisting of harmonic distortion (HD) and intermodulation distortion (IMD) in this system is theoretically investigated. Transmission over 0 km and 40 km of standard single mode fiber is successfully demonstrated and it is indicated that modulation index 0.6 is more adapted to O-SSB modulation. The error vector magnitude (EVM) of system based on O-SSB modulation after transmission over 40 km is <0.1. For O-SSB modulation, bit error rate (BER) after 40 km transmission is below forward error correction (FEC) limit of 10-3.

  7. Interferometric coupling of the Keck telescopes with single-mode fibers.

    PubMed

    Perrin, G; Woillez, J; Lai, O; Guérin, J; Kotani, T; Wizinowich, P L; Le Mignant, D; Hrynevych, M; Gathright, J; Léna, P; Chaffee, F; Vergnole, S; Delage, L; Reynaud, F; Adamson, A J; Berthod, C; Brient, B; Collin, C; Crétenet, J; Dauny, F; Deléglise, C; Fédou, P; Goeltzenlichter, T; Guyon, O; Hulin, R; Marlot, C; Marteaud, M; Melse, B-T; Nishikawa, J; Reess, J-M; Ridgway, S T; Rigaut, F; Roth, K; Tokunaga, A T; Ziegler, D

    2006-01-13

    Here we report successful interferometric coupling of two large telescopes with single-mode fibers. Interference fringes were obtained in the 2- to 2.3-micrometer wavelength range on the star 107 Herculis by using the two Keck 10-meter telescopes, each feeding their common interferometric focus with 300 meters of single-mode fibers. This experiment demonstrates the potential of fibers for future kilometric arrays of telescopes and is the first step toward the 'OHANA (Optical Hawaiian Array for Nanoradian Astronomy) interferometer at the Mauna Kea observatory in Hawaii. It opens the way to sensitive optical imagers with resolutions below 1 milli-arc second. Our experimental setup can be directly extended to large telescopes separated by many hundreds of meters. PMID:16410516

  8. Analytic first derivatives for a spin-adapted open-shell coupled cluster theory: Evaluation of first-order electrical properties

    SciTech Connect

    Datta, Dipayan Gauss, Jürgen

    2014-09-14

    An analytic scheme is presented for the evaluation of first derivatives of the energy for a unitary group based spin-adapted coupled cluster (CC) theory, namely, the combinatoric open-shell CC (COSCC) approach within the singles and doubles approximation. The widely used Lagrange multiplier approach is employed for the derivation of an analytical expression for the first derivative of the energy, which in combination with the well-established density-matrix formulation, is used for the computation of first-order electrical properties. Derivations of the spin-adapted lambda equations for determining the Lagrange multipliers and the expressions for the spin-free effective density matrices for the COSCC approach are presented. Orbital-relaxation effects due to the electric-field perturbation are treated via the Z-vector technique. We present calculations of the dipole moments for a number of doublet radicals in their ground states using restricted open-shell Hartree-Fock (ROHF) and quasi-restricted HF (QRHF) orbitals in order to demonstrate the applicability of our analytic scheme for computing energy derivatives. We also report calculations of the chlorine electric-field gradients and nuclear quadrupole-coupling constants for the CCl, CH{sub 2}Cl, ClO{sub 2}, and SiCl radicals.

  9. QMRA for Drinking Water: 2. The Effect of Pathogen Clustering in Single-Hit Dose-Response Models.

    PubMed

    Nilsen, Vegard; Wyller, John

    2016-01-01

    Spatial and/or temporal clustering of pathogens will invalidate the commonly used assumption of Poisson-distributed pathogen counts (doses) in quantitative microbial risk assessment. In this work, the theoretically predicted effect of spatial clustering in conventional "single-hit" dose-response models is investigated by employing the stuttering Poisson distribution, a very general family of count distributions that naturally models pathogen clustering and contains the Poisson and negative binomial distributions as special cases. The analysis is facilitated by formulating the dose-response models in terms of probability generating functions. It is shown formally that the theoretical single-hit risk obtained with a stuttering Poisson distribution is lower than that obtained with a Poisson distribution, assuming identical mean doses. A similar result holds for mixed Poisson distributions. Numerical examples indicate that the theoretical single-hit risk is fairly insensitive to moderate clustering, though the effect tends to be more pronounced for low mean doses. Furthermore, using Jensen's inequality, an upper bound on risk is derived that tends to better approximate the exact theoretical single-hit risk for highly overdispersed dose distributions. The bound holds with any dose distribution (characterized by its mean and zero inflation index) and any conditional dose-response model that is concave in the dose variable. Its application is exemplified with published data from Norovirus feeding trials, for which some of the administered doses were prepared from an inoculum of aggregated viruses. The potential implications of clustering for dose-response assessment as well as practical risk characterization are discussed. PMID:26812258

  10. Single-Molecule-Magnet Behavior in a [2 × 2] Grid Dy(III)4 Cluster and a Dysprosium-Doped Y(III)4 Cluster.

    PubMed

    Guo, Peng-Hu; Liu, Jiang; Wu, Zi-Hao; Yan, Hua; Chen, Yan-Cong; Jia, Jian-Hua; Tong, Ming-Liang

    2015-08-17

    Thanks to the MeCN hydrolysis in situ reaction, a [2 × 2] square grid Dy(III)4 cluster based on a polypyridyl triazolate ligand, [Dy4(OH)2(bpt)4(NO3)4(OAc)2] (1), was separated successfully and characterized through single-crystal X-ray diffraction and SQUID magnetometry. The frequency-dependent signals in the out-of-phase component of the susceptibility associated with slow relaxation of the magnetization confirmed that complex 1 displays single-molecule magnet (SMM) behavior. Two distinct slow magnetic relaxation processes, with effective energy barriers Ueff1 = 93 cm(-1) for fast relaxation and Ueff2 = 143 cm(-1) for slow relaxation observed under a zero direct-current field, are mainly attributed to the origin of single-ion behavior, which can be further acknowledged by the magnetic investigation of a dysprosium-doped yttrium cluster. Besides, it should be noted that complex 1 represents so far the highest energy barrier among the pure Dy(III)4 SMMs. PMID:26247713

  11. COUPLING

    DOEpatents

    Hawke, B.C.

    1963-02-26

    This patent relates to a releasable coupling connecting a control rod to a control rod drive. This remotely operable coupling mechanism can connect two elements which are laterally and angviarly misaligned, and provides a means for sensing the locked condition of the elements. The coupling utilizes a spherical bayonet joint which is locked against rotation by a ball detent lock. (AEC)

  12. An on-chip coupled resonator optical waveguide single-photon buffer

    PubMed Central

    Takesue, Hiroki; Matsuda, Nobuyuki; Kuramochi, Eiichi; Munro, William J.; Notomi, Masaya

    2013-01-01

    Integrated quantum optical circuits are now seen as one of the most promising approaches with which to realize single-photon quantum information processing. Many of the core elements for such circuits have been realized, including sources, gates and detectors. However, a significant missing function necessary for photonic quantum information processing on-chip is a buffer, where single photons are stored for a short period of time to facilitate circuit synchronization. Here we report an on-chip single-photon buffer based on coupled resonator optical waveguides (CROW) consisting of 400 high-Q photonic crystal line-defect nanocavities. By using the CROW, a pulsed single photon is successfully buffered for 150 ps with 50-ps tunability while maintaining its non-classical properties. Furthermore, we show that our buffer preserves entanglement by storing and retrieving one photon from a time-bin entangled state. This is a significant step towards an all-optical integrated quantum information processor. PMID:24217422

  13. Towards the coupling of single photons from dye molecules to a photonic waveguide

    NASA Astrophysics Data System (ADS)

    Polisseni, Claudio; Kho, Kiang Wei; Major, Kyle; Grandi, Samuele; Boisser, Sebastien; Hwang, Jaesuk; Clark, Alex; Hinds, Edward

    Single photons are very attractive for quantum information processing given their long coherence time and their ability to carry information in many degrees of freedom. A current challenge is the efficient generation of single photons in a photonic chip in order to scale up the complexity of quantum operations. We have proposed that a dibenzoterrylene (DBT) molecule inside an anthracene (AC) crystal could couple lifetime-limited indistinguishable single photons into a photonic waveguide if deposited in its vicinity. In this talk I describe the recent progress towards the realization of this proposal. A new method has been developed for evaporating AC and DBT to produce crystals that are wide and thin. The crystals are typically several microns across and have remarkably uniform thickness, which we control between 20 and 150 nm. The crystal growth is carried out in a glove bag in order to exclude oxygen, which improves the photostability of the DBT molecules by orders of magnitude. We image the fluorescence of single DBT molecules using confocal microscopy and analyse the polarization of this light to determine the alignment of the molecules. I will report on our efforts to control the alignement of the molecules by aligning the host matrix with the substrate.

  14. Quantum Interference Induced Photon Blockade in a Coupled Single Quantum Dot-Cavity System

    PubMed Central

    Tang, Jing; Geng, Weidong; Xu, Xiulai

    2015-01-01

    We propose an experimental scheme to implement a strong photon blockade with a single quantum dot coupled to a nanocavity. The photon blockade effect can be tremendously enhanced by driving the cavity and the quantum dot simultaneously with two classical laser fields. This enhancement of photon blockade is ascribed to the quantum interference effect to avoid two-photon excitation of the cavity field. Comparing with Jaynes-Cummings model, the second-order correlation function at zero time delay g(2)(0) in our scheme can be reduced by two orders of magnitude and the system sustains a large intracavity photon number. A red (blue) cavity-light detuning asymmetry for photon quantum statistics with bunching or antibunching characteristics is also observed. The photon blockade effect has a controllable flexibility by tuning the relative phase between the two pumping laser fields and the Rabi coupling strength between the quantum dot and the pumping field. Moreover, the photon blockade scheme based on quantum interference mechanism does not require a strong coupling strength between the cavity and the quantum dot, even with the pure dephasing of the system. This simple proposal provides an effective way for potential applications in solid state quantum computation and quantum information processing. PMID:25783560

  15. Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells.

    PubMed

    Bieler, Jonathan; Cannavo, Rosamaria; Gustafson, Kyle; Gobet, Cedric; Gatfield, David; Naef, Felix

    2014-01-01

    Circadian cycles and cell cycles are two fundamental periodic processes with a period in the range of 1 day. Consequently, coupling between such cycles can lead to synchronization. Here, we estimated the mutual interactions between the two oscillators by time-lapse imaging of single mammalian NIH3T3 fibroblasts during several days. The analysis of thousands of circadian cycles in dividing cells clearly indicated that both oscillators tick in a 1:1 mode-locked state, with cell divisions occurring tightly 5 h before the peak in circadian Rev-Erbα-YFP reporter expression. In principle, such synchrony may be caused by either unidirectional or bidirectional coupling. While gating of cell division by the circadian cycle has been most studied, our data combined with stochastic modeling unambiguously show that the reverse coupling is predominant in NIH3T3 cells. Moreover, temperature, genetic, and pharmacological perturbations showed that the two interacting cellular oscillators adopt a synchronized state that is highly robust over a wide range of parameters. These findings have implications for circadian function in proliferative tissues, including epidermis, immune cells, and cancer. PMID:25028488

  16. A Hybrid Model for Erythrocyte Membrane: A Single Unit of Protein Network Coupled with Lipid Bilayer

    PubMed Central

    Zhu, Qiang; Vera, Carlos; Asaro, Robert J.; Sche, Paul; Sung, L. Amy

    2007-01-01

    To investigate the nanomechanics of the erythrocyte membrane we developed a hybrid model that couples the actin-spectrin network to the lipid bilayer. This model features a Fourier space Brownian dynamics model of the bilayer, a Brownian dynamics model of the actin protofilament, and a modified wormlike-chain model of the spectrin (including a cable-dynamics model to predict the oscillation in tension). This model enables us to predict the nanomechanics of single or multiple units of the protein network, the lipid bilayer, and the effect of their interactions. The present work is focused on the attitude of the actin protofilament at the equilibrium states coupled with the elevations of the lipid bilayer through their primary linkage at the suspension complex in deformations. Two different actin-spectrin junctions are considered at the junctional complex. With a point-attachment junction, large pitch angles and bifurcation of yaw angles are predicted. Thermal fluctuations at bifurcation may lead to mode-switching, which may affect the network and the physiological performance of the membrane. In contrast, with a wrap-around junction, pitch angles remain small, and the occurrence of bifurcation is greatly reduced. These simulations suggest the importance of three-dimensional molecular junctions and the lipid bilayer/protein network coupling on cell membrane mechanics. PMID:17449663

  17. Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells

    PubMed Central

    Bieler, Jonathan; Cannavo, Rosamaria; Gustafson, Kyle; Gobet, Cedric; Gatfield, David; Naef, Felix

    2014-01-01

    Circadian cycles and cell cycles are two fundamental periodic processes with a period in the range of 1 day. Consequently, coupling between such cycles can lead to synchronization. Here, we estimated the mutual interactions between the two oscillators by time-lapse imaging of single mammalian NIH3T3 fibroblasts during several days. The analysis of thousands of circadian cycles in dividing cells clearly indicated that both oscillators tick in a 1:1 mode-locked state, with cell divisions occurring tightly 5 h before the peak in circadian Rev-Erbα-YFP reporter expression. In principle, such synchrony may be caused by either unidirectional or bidirectional coupling. While gating of cell division by the circadian cycle has been most studied, our data combined with stochastic modeling unambiguously show that the reverse coupling is predominant in NIH3T3 cells. Moreover, temperature, genetic, and pharmacological perturbations showed that the two interacting cellular oscillators adopt a synchronized state that is highly robust over a wide range of parameters. These findings have implications for circadian function in proliferative tissues, including epidermis, immune cells, and cancer. PMID:25028488

  18. Free-space-coupled superconducting nanowire single-photon detectors for infrared optical communications.

    PubMed

    Bellei, Francesco; Cartwright, Alyssa P; McCaughan, Adam N; Dane, Andrew E; Najafi, Faraz; Zhao, Qingyuan; Berggren, Karl K

    2016-02-22

    This paper describes the construction of a cryostat and an optical system with a free-space coupling efficiency of 56.5% ± 3.4% to a superconducting nanowire single-photon detector (SNSPD) for infrared quantum communication and spectrum analysis. A 1K pot decreases the base temperature to T = 1.7 K from the 2.9 K reached by the cold head cooled by a pulse-tube cryocooler. The minimum spot size coupled to the detector chip was 6.6 ± 0.11 µm starting from a fiber source at wavelength, λ = 1.55 µm. We demonstrated photon counting on a detector with an 8 × 7.3 µm2 area. We measured a dark count rate of 95 ± 3.35 kcps and a system detection efficiency of 1.64% ± 0.13%. We explain the key steps that are required to improve further the coupling efficiency. PMID:26906988

  19. Ultra-small single-negative electric metamaterials for electromagnetic coupling reduction of microstrip antenna array.

    PubMed

    Xu, He-Xiu; Wang, Guang-Ming; Qi, Mei-Qing; Zeng, Hui-Yong

    2012-09-24

    We report initially the design, fabrication and measurement of using waveguided electric metamaterials (MTM) in the design of closely-spaced microtrip antenna arrays with mutual coupling reduction. The complementary spiral ring resonators (CSRs) which exhibit single negative resonant permittivity around 3.5GHz are used as the basic electric MTM element. For verification, two CSRs with two and three concentric rings are considered, respectively. By properly arranging these well engineered waveguided MTMs between two H-plane coupled patch antennas, both numerical and measured results indicate that more than 8.4 dB mutual coupling reduction is obtained. The mechanism has been studied from a physical insight. The electric MTM element is electrically small, enabling the resultant antenna array to exhibit a small separation (λo/8 at the operating wavelength) and thus a high directivity. The proposed strategy opens an avenue to new types of antenna with super performances and can be generalized for other electric resonators. PMID:23037347

  20. A multi-substrate single-file model for ion-coupled transporters.

    PubMed Central

    Su, A; Mager, S; Mayo, S L; Lester, H A

    1996-01-01

    Ion-coupled transporters are simulated by a model that differs from contemporary alternating-access schemes. Beginning with concepts derived from multi-ion pores, the model assumes that substrates (both inorganic ions and small organic molecules) hop a) between the solutions and binding sites and b) between binding sites within a single-file pore. No two substrates can simultaneously occupy the same site. Rate constants for hopping can be increased both a) when substrates in two sites attract each other into a vacant site between them and b) when substrates in adjacent sites repel each other. Hopping rate constants for charged substrates are also modified by the membrane field. For a three-site model, simulated annealing yields parameters to fit steady-state measurements of flux coupling, transport-associated currents, and charge movements for the GABA transporter GAT1. The model then accounts for some GAT1 kinetic data as well. The model also yields parameters that describe the available data for the rat 5-HT transporter and for the rabbit Na(+)-glucose transporter. The simulations show that coupled fluxes and other aspects of ion transport can be explained by a model that includes local substrate-substrate interactions but no explicit global conformational changes. Images FIGURE 1 FIGURE 2 FIGURE 9 PMID:8789093

  1. Coupling Single Giant Nanocrystal Quantum Dots to the Fundamental Mode of Patch Nanoantennas through Fringe Field

    PubMed Central

    Wang, Feng; Karan, Niladri S.; Minh Nguyen, Hue; Ghosh, Yagnaseni; Hollingsworth, Jennifer A.; Htoon, Han

    2015-01-01

    Through single dot spectroscopy and numerical simulation studies, we demonstrate that the fundamental mode of gold patch nanoantennas have fringe-field resonance capable of enhancing the nano-emitters coupled around the edge of the patch antenna. This fringe-field coupling is used to enhance the radiative rates of core/thick-shell nanocrystal quantum dots (g-NQDs) that cannot be embedded into the ultra-thin dielectric gap of patch nanoantennas due to their large sizes. We attain 14 and 3 times enhancements in single exciton radiative decay rate and bi-exciton emission efficiencies of g-NQDs respectively, with no detectable metal quenching. Our numerical studies confirmed our experimental results and further reveal that patch nanoantennas can provide strong emission enhancement for dipoles lying not only in radial direction of the circular patches but also in the direction normal to the antennas surface. This provides a distinct advantage over the parallel gap-bar antennas that can provide enhancement only for the dipoles oriented across the gap. PMID:26394763

  2. Strain coupling of a mechanical resonator to a single quantum emitter in diamond

    NASA Astrophysics Data System (ADS)

    Lee, Kenneth; Lee, Donghun; Ovartchaiyapong, Preeti; Jayich, Ania

    Hybrid quantum devices are central to the advancement of several emerging quantum technologies, including quantum information science and quantum-assisted sensing. Here, we present a hybrid quantum device in which strain fields associated with resonant vibrations of a diamond cantilever dynamically modulate the energy and polarization dependence of the optical transitions of a single nitrogen-vacancy defect center in diamond. With mechanical driving, we observe optomechanical couplings exceeding 10 GHz. Through resonant excitation spectroscopy, we quantitatively characterize the intrinsic strain environment of a single defect, and use this optomechanical coupling to tune the zero-phonon line of the defect. Through stroboscopic measurements, we show that we are able to match the frequency and polarization dependence of the optical zero-phonon lines of two separate NV centers. The experiments demonstrated here mark an important step toward realizing a monolithic hybrid quantum device capable of realizing and probing the dynamics of non-classical states of mechanical resonators, spin-systems, and photons. This work was supported with grants from the AFOSR, NSF and DARPA.

  3. Coupling Single Giant Nanocrystal Quantum Dots to the Fundamental Mode of Patch Nanoantennas through Fringe Field.

    PubMed

    Wang, Feng; Karan, Niladri S; Minh Nguyen, Hue; Ghosh, Yagnaseni; Hollingsworth, Jennifer A; Htoon, Han

    2015-01-01

    Through single dot spectroscopy and numerical simulation studies, we demonstrate that the fundamental mode of gold patch nanoantennas have fringe-field resonance capable of enhancing the nano-emitters coupled around the edge of the patch antenna. This fringe-field coupling is used to enhance the radiative rates of core/thick-shell nanocrystal quantum dots (g-NQDs) that cannot be embedded into the ultra-thin dielectric gap of patch nanoantennas due to their large sizes. We attain 14 and 3 times enhancements in single exciton radiative decay rate and bi-exciton emission efficiencies of g-NQDs respectively, with no detectable metal quenching. Our numerical studies confirmed our experimental results and further reveal that patch nanoantennas can provide strong emission enhancement for dipoles lying not only in radial direction of the circular patches but also in the direction normal to the antennas surface. This provides a distinct advantage over the parallel gap-bar antennas that can provide enhancement only for the dipoles oriented across the gap. PMID:26394763

  4. Coupling Single Giant Nanocrystal Quantum Dots to the Fundamental Mode of Patch Nanoantennas through Fringe Field

    NASA Astrophysics Data System (ADS)

    Wang, Feng; Karan, Niladri S.; Minh Nguyen, Hue; Ghosh, Yagnaseni; Hollingsworth, Jennifer A.; Htoon, Han

    2015-09-01

    Through single dot spectroscopy and numerical simulation studies, we demonstrate that the fundamental mode of gold patch nanoantennas have fringe-field resonance capable of enhancing the nano-emitters coupled around the edge of the patch antenna. This fringe-field coupling is used to enhance the radiative rates of core/thick-shell nanocrystal quantum dots (g-NQDs) that cannot be embedded into the ultra-thin dielectric gap of patch nanoantennas due to their large sizes. We attain 14 and 3 times enhancements in single exciton radiative decay rate and bi-exciton emission efficiencies of g-NQDs respectively, with no detectable metal quenching. Our numerical studies confirmed our experimental results and further reveal that patch nanoantennas can provide strong emission enhancement for dipoles lying not only in radial direction of the circular patches but also in the direction normal to the antennas surface. This provides a distinct advantage over the parallel gap-bar antennas that can provide enhancement only for the dipoles oriented across the gap.

  5. Coupling single giant nanocrystal quantum dots to the fundamental mode of patch nanoantennas through fringe field

    DOE PAGESBeta

    Wang, Feng; Karan, Niladri S.; Minh Nguyen, Hue; Ghosh, Yagnaseni; Hollingsworth, Jennifer A.; Htoon, Han

    2015-09-23

    Through single dot spectroscopy and numerical simulation studies, we demonstrate that the fundamental mode of gold patch nanoantennas have fringe-field resonance capable of enhancing the nano-emitters coupled around the edge of the patch antenna. This fringe-field coupling is used to enhance the radiative rates of core/thick-shell nanocrystal quantum dots (g-NQDs) that cannot be embedded into the ultra-thin dielectric gap of patch nanoantennas due to their large sizes. We attain 14 and 3 times enhancements in single exciton radiative decay rate and bi-exciton emission efficiencies of g-NQDs respectively, with no detectable metal quenching. Our numerical studies confirmed our experimental results andmore » further reveal that patch nanoantennas can provide strong emission enhancement for dipoles lying not only in radial direction of the circular patches but also in the direction normal to the antennas surface. Finally, this provides a distinct advantage over the parallel gap-bar antennas that can provide enhancement only for the dipoles oriented across the gap.« less

  6. Coupling single giant nanocrystal quantum dots to the fundamental mode of patch nanoantennas through fringe field

    SciTech Connect

    Wang, Feng; Karan, Niladri S.; Minh Nguyen, Hue; Ghosh, Yagnaseni; Hollingsworth, Jennifer A.; Htoon, Han

    2015-09-23

    Through single dot spectroscopy and numerical simulation studies, we demonstrate that the fundamental mode of gold patch nanoantennas have fringe-field resonance capable of enhancing the nano-emitters coupled around the edge of the patch antenna. This fringe-field coupling is used to enhance the radiative rates of core/thick-shell nanocrystal quantum dots (g-NQDs) that cannot be embedded into the ultra-thin dielectric gap of patch nanoantennas due to their large sizes. We attain 14 and 3 times enhancements in single exciton radiative decay rate and bi-exciton emission efficiencies of g-NQDs respectively, with no detectable metal quenching. Our numerical studies confirmed our experimental results and further reveal that patch nanoantennas can provide strong emission enhancement for dipoles lying not only in radial direction of the circular patches but also in the direction normal to the antennas surface. Finally, this provides a distinct advantage over the parallel gap-bar antennas that can provide enhancement only for the dipoles oriented across the gap.

  7. Conductance through single biphenyl molecules: symmetric and asymmetric coupling to electrodes.

    PubMed

    Kanthasamy, Karthiga; Pfnür, Herbert

    2015-01-01

    The contacts and the chemical bonds formed between metallic electrodes and molecules determine to a large extent the conductive properties of single molecular junctions, which represent the smallest possible active elements in an electronic circuit. We therefore investigated in a comparative study, using the break junction technique (MCBJ), the conductive properties of [1,1'-biphenyl]-4,4'-dithiol (M1) and of 4'-mercapto-[1,1'-biphenyl]-4-carbonitrile (M2) between gold electrodes. As a function of electrode separation, characterized by the conductance close to 0 V, we found several plateaus of relative stability, with those close to 0.01G0 being the most pronounced. The overall conductance of symmetric and asymmetric molecules were surprisingly similar, only the range of stability was smaller for M2. While M1 yielded symmetric I-V-curves, only small asymmetries were detected for M2. These are also reflected in the comparable values for coupling parameters using the single level resonance model. The high conductance for the asymmetric molecule is interpreted as a result of coherent coupling of electronic states through the whole molecule, so that the outcome cannot be predicted just by adding conductive properties of individual molecular groups. PMID:26425419

  8. Planar-to-Tubular Structural Transition in Boron Clusters: B20 as the Embryo of Single-Walled Boron Nanotubes

    SciTech Connect

    Boggavarapu, Kiran; Bulusu, Satya; Zhai, Hua JIN.; Yoo, Soohaeng; Zeng, Xiao Cheng; Wang, Lai S.

    2005-01-25

    Experimental and computational simulations revealed that boron clusters, which favor planar (2D) structures up to 18 atoms, prefer three-dimensional (3D) structures beginning at 20 atoms. Using global optimization methods, we found that the B20 neutral cluster has a double-ring tubular structure with a diameter of 5.2 ?. In the B20- anion, the tubular structure is shown to be isoenergetic to 2D structures, which were observed and confirmed by photoelectron spectroscopy. The 2D to 3D structural transition observed at B20, reminiscent to the ring-to-fullerene transition at C20 in carbon clusters, suggests it may be considered as the embryo of the thinnest single-walled boron nanotubes.

  9. Quadratic coupling between a classical nanomechanical oscillator and a single spin

    NASA Astrophysics Data System (ADS)

    Dhingra, Shonali

    Though the motions of macroscopic objects must ultimately be governed by quantum mechanics, the distinctive features of quantum mechanics can be hidden or washed out by thermal excitations and coupling to the environment. For the work of this thesis, we tried to develop a hybrid system consisting a classical and a quantum component, which can be used to probe the quantum nature of both these components. This hybrid system quadratically coupled a nanomechanical oscillator (NMO) with a single spin in presence of a uniform external magnetic field. The NMO was fabricated out of single-layer graphene, grown using Chemical Vapor Deposition (CVD) and patterned using various lithography and etching techniques. The NMO was driven electrically and detected optically. The NMO's resonant frequencies, and their stabilities were studied. The spin originated from a nitrogen vacancy (NV) center in a diamond nanocrystal which is positioned on the NMO. In presence of an external magnetic field, we show that the NV centers are excellen theta2 sensors. Their sensitivity is shown to increase much faster than linearly with the external magnetic field and diverges as the external field approaches an internally-defined limit. Both these components of the hybrid system get coupled by physical placement of NVcontaining diamond nanocrystals on top of NMO undergoing torsional mode of oscillation, in presence of an external magnetic field. The capability of the NV centers to detect the quadratic behavior of the oscillation angle of the NMO with excellent sensitivity, ensures quantum non-demolition (QND) measurement of both components of the hybrid system. This enables a bridge between the quantum and classical worlds for a simple readout of the NV center spin and observation of the discrete states of the NMO. This system could become the building block for a wide range of quantum nanomechanical devices.

  10. First-principles investigation of the dissociation and coupling of methane on small copper clusters: Interplay of collision dynamics and geometric and electronic effects

    NASA Astrophysics Data System (ADS)

    Varghese, Jithin J.; Mushrif, Samir H.

    2015-05-01

    Small metal clusters exhibit unique size and morphology dependent catalytic activity. The search for alternate minimum energy pathways and catalysts to transform methane to more useful chemicals and carbon nanomaterials led us to investigate collision induced dissociation of methane on small Cu clusters. We report here for the first time, the free energy barriers for the collision induced activation, dissociation, and coupling of methane on small Cu clusters (Cun where n = 2-12) using ab initio molecular dynamics and metadynamics simulations. The collision induced activation of the stretching and bending vibrations of methane significantly reduces the free energy barrier for its dissociation. Increase in the cluster size reduces the barrier for dissociation of methane due to the corresponding increase in delocalisation of electron density within the cluster, as demonstrated using the electron localisation function topology analysis. This enables higher probability of favourable alignment of the C-H stretching vibration of methane towards regions of high electron density within the cluster and makes higher number of sites available for the chemisorption of CH3 and H upon dissociation. These characteristics contribute in lowering the barrier for dissociation of methane. Distortion and reorganisation of cluster geometry due to high temperature collision dynamics disturb electron delocalisation within them and increase the barrier for dissociation. Coupling reactions of CHx (x = 1-3) species and recombination of H with CHx have free energy barriers significantly lower than complete dehydrogenation of methane to carbon. Thus, competition favours the former reactions at high hydrogen saturation on the clusters.

  11. Clusters of interacting single domain Co nanomagnets for multistate perpendicular magnetic media applications

    NASA Astrophysics Data System (ADS)

    Xiao, Qijun; Yang, Tianyu; Ursache, Andrei; Tuominen, Mark T.

    2008-04-01

    In this work we develop prototype elements for multistate (beyond binary) perpendicular data storage using interacting nanomagnet clusters. This experimental work confirms earlier theoretical work that predicted multiple discrete values of stable remanent magnetization for such clusters. The fabrication scheme is based on ultrahigh resolution electron beam lithography performed on a thin suspended silicon nitride membrane to reduce the secondary backscattered electrons from the substrate. A Co nanomagnet cluster array is deposited into the nanotemplate via pulse-reverse electrodeposition to create nanomagnets with the favored uniaxial perpendicular anisotropy. Magnetic force microscopy (MFM) measurements show the perpendicular magnetization of individual Co nanomagnets and the combined multiconfiguration behavior of a nanomagnet cluster. In concept, the discrete values of net remanent magnetization of the cluster, which represent distinct information states, can be "programmed" by a uniform applied field.

  12. Self-interstitial clusters in radiation damage accumulation: coupled molecular dynamics and metadynamics simulations

    NASA Astrophysics Data System (ADS)

    Monasterio, Paul R.; Yip, Sidney; Yildiz, Bilge

    2013-04-01

    Self-interstitial interactions causing volume expansion in bcc Fe are studied through an idealized microstructure evolution model in which only self-interstial atoms (SIAs) are inserted. Using a combination of non-equilibrium molecular dynamics simulations and a metadynamics algorithm, meta-stable SIA clusters are observed to nucleate and grow into dislocation loops or localized amorphous phases, both contributing to swelling behavior persisting well beyond the atomistic time scale. A non-monotonic local density variation with dose rate is found and attributed to competing evolutions of different defective structures.

  13. Single stars in the Hyades open cluster. Fiducial sequence for testing stellar and atmospheric models

    NASA Astrophysics Data System (ADS)

    Kopytova, Taisiya G.; Brandner, Wolfgang; Tognelli, Emanuele; Prada Moroni, Pier Giorgio; Da Rio, Nicola; Röser, Siegfried; Schilbach, Elena

    2016-01-01

    Context. Age and mass determinations for isolated stellar objects remain model-dependent. While stellar interior and atmospheric theoretical models are rapidly evolving, we need a powerful tool to test them. Open clusters are good candidates for this role. Aims: We aim to create a fiducial sequence of stellar objects for testing stellar and atmospheric models. Methods: We complement previous studies on the Hyades multiplicity by Lucky Imaging observations with the AstraLux Norte camera. This allows us to exclude possible binary and multiple systems with companions outside a 2-7 AU separation and to create a single-star sequence for the Hyades. The sequence encompasses 250 main-sequence stars ranging from A5V to M6V. Using the Tool for Astrophysical Data Analysis (TA-DA), we create various theoretical isochrones applying different combinations of interior and atmospheric models. We compare the isochrones with the observed Hyades single-star sequence on J vs. J-Ks, J vs. J-H, and Ks vs. H-Ks color-magnitude diagrams. As a reference we also compute absolute fluxes and magnitudes for all stars from X-ray to mid-infrared based on photometric measurements available in the literature(ROSAT X-ray, GALEX UV, APASS gri, 2MASS JHKs, and WISE W1 to W4). Results: We find that combinations of both PISA and DARTMOUTH stellar interior models with BT-Settl 2010 atmospheric models describe the observed sequence well. We use PISA in combination with BT-Settl 2010 models to derive theoretical predictions for physical parameters (Teff, mass, log g) of 250 single stars in the Hyades. The full sequence covers the mass range of 0.13-2.30 M⊙, and effective temperatures between 3060 K and 8200 K. Conclusions: Within the measurement uncertainties, the current generation of models agree well with the single-star sequence. The primary limitations are the uncertainties in the measurement of the distances to individual Hyades members, and uncertainties in the photometry. Gaia parallaxes

  14. Swing, release, and escape mechanisms contribute to the generation of phase-locked cluster patterns in a globally coupled FitzHugh-Nagumo model

    NASA Astrophysics Data System (ADS)

    Rotstein, Horacio G.; Wu, Hui

    2012-12-01

    We investigate the mechanism of generation of phase-locked cluster patterns in a globally coupled FitzhHugh-Nagumo model where the fast variable (activator) receives global feedback from the slow variable (inhibitor). We identify three qualitatively different mechanisms (swing-and-release, hold-and-release, and escape-and-release) that contribute to the generation of these patterns. We describe these mechanisms and use this framework to explain under what circumstances two initially out-of-phase oscillatory clusters reach steady phase-locked and in-phase synchronized solutions, and how the phase difference between these steady state cluster patterns depends on the clusters relative size, the global coupling intensity, and other model parameters.

  15. A single model for the variety of multiple-population formation(s) in globular clusters: a temporal sequence

    NASA Astrophysics Data System (ADS)

    D'Antona, F.; Vesperini, E.; D'Ercole, A.; Ventura, P.; Milone, A. P.; Marino, A. F.; Tailo, M.

    2016-05-01

    We explain the multiple populations recently found in the `prototype' globular cluster (GC) NGC 2808 in the framework of the asymptotic giant branch (AGB) scenario. The chemistry of the five - or more - populations is approximately consistent with a sequence of star formation events, starting after the Type II supernova epoch, lasting approximately until the time when the third dredge-up affects the AGB evolution (age ˜90-120 Myr), and ending when the Type Ia supernovae begin exploding in the cluster, eventually clearing it from the gas. The formation of the different populations requires episodes of star formation in AGB gas diluted with different amounts of pristine gas. In the nitrogen-rich, helium-normal population identified in NGC 2808 by the UV Legacy Survey of GCs, the nitrogen increase is due to the third dredge-up in the smallest mass AGB ejecta involved in the star formation of this population. The possibly iron-rich small population in NGC 2808 may be a result of contamination by a single Type Ia supernova. The NGC 2808 case is used to build a general framework to understand the variety of `second-generation' stars observed in GCs. Cluster-to-cluster variations are ascribed to differences in the effects of the many processes and gas sources which may be involved in the formation of the second generation. We discuss an evolutionary scheme, based on pollution by delayed Type II supernovae, which accounts for the properties of s-Fe-anomalous clusters.

  16. Analysis of Binding at a Single Spatially Localized Cluster of Binding Sites by Fluorescence Recovery after Photobleaching

    PubMed Central

    Sprague, Brian L.; Müller, Florian; Pego, Robert L.; Bungay, Peter M.; Stavreva, Diana A.; McNally, James G.

    2006-01-01

    Cells contain many subcellular structures in which specialized proteins locally cluster. Binding interactions within such clusters may be analyzed in live cells using models for fluorescence recovery after photobleaching (FRAP). Here we analyze a three-dimensional FRAP model that accounts for a single spatially localized cluster of binding sites in the presence of both diffusion and impermeable boundaries. We demonstrate that models completely ignoring the spatial localization of binding yield poor estimates for the binding parameters within the binding site cluster. In contrast, we find that ignoring only the restricted axial height of the binding-site cluster is far less detrimental, thereby enabling the use of computationally less expensive models. We also identify simplified solutions to the FRAP model for limiting behaviors where either diffusion or binding dominate. We show how ignoring a role for diffusion can sometimes produce serious errors in binding parameter estimation. We illustrate application of the method by analyzing binding of a transcription factor, the glucocorticoid receptor, to a tandem array of mouse mammary tumor virus promoter sites in live cells, obtaining an estimate for an in vivo binding constant (10−7 M), and a first approximation of an upper bound on the transcription-factor residence time at the promoter (∼170 ms). These FRAP analysis tools will be important for measuring key cellular binding parameters necessary for a complete and accurate description of the networks that regulate cellular behavior. PMID:16679358

  17. Binding energies and bond distances of Ni(CO)x, x=1-4: An application of coupled-cluster theory

    NASA Astrophysics Data System (ADS)

    Blomberg, Margareta R. A.; Siegbahn, Per E. M.; Lee, Timothy J.; Rendell, Alistair P.; Rice, Julia E.

    1991-10-01

    The accuracy of the single and double excitation coupled-cluster (CCSD) method that includes a perturbational estimate of connected triple excitations, denoted CCSD(T), has been tested for some representative transition metal complexes. For both the binding energy and metal to ligand bond distance of NiCO and Ni(CO)2, the CCSD(T) method yields results in very good agreement with multireference averaged coupled-pair functional (ACPF) calculations. The results are much better than those obtained using either the coupled-pair functional (CPF) or modified CPF (MCPF) methods. The contribution of connected triples to the binding energy is significant for all Ni(CO)x, x=1-4 ranging from 15 kcal/mol for NiCO to 30 kcal/mol for Ni(CO)4. In contrast, for the geometries the connected triples are only of minor importance. In this case, the correct treatment of disconnected quadruple excitations appears to be more important. For Ni(CO)4, the calculated binding energy is 125 kcal/mol (expt. 140 kcal/mol) and the bond distance is 3.46 a0 (exp. 3.45 a0). Virtually all of the remaining discrepancy, relative to experiment, should be due to limitations in the one-particle basis set. In addition, some test calculations were performed for Ni(C2H4), where near degeneracy effects are even more severe than for the nickel carbonyls and the CCSD(T) method gives very accurate results in this case also.

  18. Determination of Ruscogenin in Ophiopogonis Radix by High-performance Liquid Chromatography-evaporative Light Scattering Detector Coupled with Hierarchical Clustering Analysis

    PubMed Central

    Liu, Chun-Hua; Li, Ming; Feng, Ya-Qian; Hu, Yuan-Jia; Yu, Bo-Yang; Qi, Jin

    2016-01-01

    Background: Ophiopogonis Radix is a famous traditional Chinese medicine. It is necessary to establish a suitable quality control methods of Ophiopogonis Radix. Objective: To investigate the quality control methods of Ophiopogonis Radix by high-performance liquid chromatography (HPLC) coupled with evaporative light scattering detector (ELSD). Materials and Methods: A rapid and simple method, HPLC coupled with ELSD, was applied to determinate ruscogenin in 35 batches of Ophiopogenis Radix samples. Orthogonal tests and single factor explorations were used to optimize the extraction condition of ruscogenin. The content of ruscogenin in different origin was further analyzed by hierarchical clustering analysis (HCA). Results: The ruscogenin was successfully determined by HPLC-ELSD with a two-phase solvent system composed of methanol-water (88:12) at a flow rate 1.0 ml/min, column temperature maintained at 25°C, detector draft tube temperature at 42.2°C, nebulizer gas flow rate at 1.4 L/min, and the gain at 8. The result showed the good linearity of ruscogenin in the range of 40.20–804.00 μg/ml (R2 = 0.9996). Average of recovery was 101.3% (relative standard deviation = 1.59%). A significant difference of ruscogenin content was shown among 35 batches of Ophiopogenis Radix from different origin, varied from 0.0035% to 0.0240%. HCA based on the content of ruscogenin indicated that Ophiopogonis Radix in different origin was mainly divided into two clusters. Conclusion: This simple, rapid, low-cost, and reliable HPLC-ELSD method could be suitable for measurement of ruscogenin content rations and quality control of Ophiopogonis Radix. SUMMARY Ophiopogonis Radix is an important Traditional Chinese Medicine (TCM) to treat and prevent cardiovascular diseases and acute or chronic inflammation for thousands of years. Steroidal saponins were known as the dominant active components for their significant cardiovascular activity, and the most steroid sapogenin of them is

  19. Spectral functions of the uniform electron gas via coupled-cluster theory and comparison to the G W and related approximations

    NASA Astrophysics Data System (ADS)

    McClain, James; Lischner, Johannes; Watson, Thomas; Matthews, Devin A.; Ronca, Enrico; Louie, Steven G.; Berkelbach, Timothy C.; Chan, Garnet Kin-Lic

    2016-06-01

    We use ab initio coupled-cluster theory to compute the spectral function of the uniform electron gas at a Wigner-Seitz radius of rs=4 . The coupled-cluster approximations we employ go significantly beyond the diagrammatic content of state-of-the-art G W theory. We compare our calculations extensively to G W and G W -plus-cumulant theory, illustrating the strengths and weaknesses of these methods in capturing the quasiparticle and satellite features of the electron gas. Our accurate calculations further allow us to address the long-standing debate over the occupied bandwidth of metallic sodium. Our findings indicate that the future application of coupled-cluster theory to condensed phase material spectra is highly promising.

  20. Improved single-cell culture achieved using micromolding in capillaries technology coupled with poly (HEMA)

    PubMed Central

    Ye, Fang; Jiang, Jin; Chang, Honglong; Xie, Li; Deng, Jinjun; Ma, Zhibo; Yuan, Weizheng

    2015-01-01

    Cell studies at the single-cell level are becoming more and more critical for understanding the complex biological processes. Here, we present an optimization study investigating the positioning of single cells using micromolding in capillaries technology coupled with the cytophobic biomaterial poly (2-hydroxyethyl methacrylate) (poly (HEMA)). As a cytophobic biomaterial, poly (HEMA) was used to inhibit cells, whereas the glass was used as the substrate to provide a cell adhesive background. The poly (HEMA) chemical barrier was obtained using micromolding in capillaries, and the microchannel networks used for capillarity were easily achieved by reversibly bonding the polydimethylsiloxane mold and the glass. Finally, discrete cell adhesion regions were presented on the glass surface. This method is facile and low cost, and the reagents are commercially available. We validated the cytophobic abilities of the poly (HEMA), optimized the channel parameters for higher quality and more stable poly (HEMA) patterns by investigating the effects of changing the aspect ratio and the width of the microchannel on the poly (HEMA) grid pattern, and improved the single-cell occupancy by optimizing the dimensions of the cell adhesion regions. PMID:26339307