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Sample records for degraded area planted

  1. Surface Soil Preparetion for Leguminous Plants Growing in Degraded Areas by Mining Located in Amazon Forest-Brazil

    NASA Astrophysics Data System (ADS)

    Irio Ribeiro, Admilson; Hashimoto Fengler, Felipe; Araújo de Medeiros, Gerson; Márcia Longo, Regina; Frederici de Mello, Giovanna; José de Melo, Wanderley

    2015-04-01

    The revegetation of areas degraded by mining usually requires adequate mobilization of surface soil for the development of the species to be implemented. Unlike the traditional tillage, which has periodicity, the mobilization of degraded areas for revegetation can only occur at the beginning of the recovery stage. In this sense, the process of revegetation has as purpose the establishment of local native vegetation with least possible use of inputs and superficial tillage in order to catalyze the process of natural ecological succession, promoting the reintegration of areas and minimizing the negative impacts of mining activities in environmental. In this context, this work describes part of a study of land reclamation by tin exploitation in the Amazon ecosystem in the National Forest Jamari- Rondonia Brazil. So, studied the influence of surface soil mobilization in pit mine areas and tailings a view to the implementation of legumes. The results show that the surface has areas of mobilizing a significant effect on the growth of leguminous plants, areas for both mining and to tailings and pit mine areas.

  2. Plant biomass degradation by fungi.

    PubMed

    Mäkelä, Miia R; Donofrio, Nicole; de Vries, Ronald P

    2014-11-01

    Plant biomass degradation by fungi has implications for several fields of science. The enzyme systems employed by fungi for this are broadly used in various industrial sectors such as food & feed, pulp & paper, detergents, textile, wine, and more recently biofuels and biochemicals. In addition, the topic is highly relevant in the field of plant pathogenic fungi as they degrade plant biomass to either gain access to the plant or as carbon source, resulting in significant crop losses. Finally, fungi are the main degraders of plant biomass in nature and as such have an essential role in the global carbon cycle and ecology in general. In this review we provide a global view on the development of this research topic in saprobic ascomycetes and basidiomycetes and in plant pathogenic fungi and link this to the other papers of this special issue on plant biomass degradation by fungi. PMID:25192611

  3. Complex plant facilitation-competition mechanisms and co-evolution of semiarid areas: are shrubs always guilty for degradation?

    NASA Astrophysics Data System (ADS)

    Saco, P. M.; Moreno de las Heras, M.

    2011-12-01

    Arid and semi-arid areas function as tightly coupled ecohydrological systems with strong feedbacks occurring across at a variety of spatial and temporal scales. The vegetation of these regions usually consists of patches with mixed herbaceous and woody plant species that display both negative (competition) and positive (facilitation) interactions. Though the role of facilitative interactions in plant communities has received considerable attention in the last two decades, their effects on hydrologic connectivity and landscape function are yet unclear. Here we investigate various vegetation-induced mechanisms that lead to facilitative interactions among vegetation species, and their effects on water redistribution, soil moisture availability, hydrologic connectivity, and ecosystem function. For this purpose we adapt a dynamic vegetation-landform model that captures the dynamic evolution of Australian banded vegetation patterns, to simulate coexisting grasses and shrubs under varying competition-facilitation conditions. The abiotic facilitation effects that we explore are those more relevant to dryer environments, and therefore associated to changes in microenvironmental conditions for water availability. That is, we explore facilitation effects induced by one of the species (ecosystem engineer) that results in enhanced water availability for the other species. (i.e., preferential enhancement of infiltration by one or both species, and shading effects by shrubs). Though it is clear that vegetation enhances infiltration, it is still unclear from field observations available in the literature, which is the species (herbaceous or woody) that is mainly responsible for this enhancement. We therefore test alternative hypothesis (varying relative contributions to total infiltration by both species) and analyse the results of the simulations in terms of dynamic spatial patterns of biomass density, soil moisture and hydrologic connectivity. Results indicate that pattern

  4. Degradation of plant peroxisomes by autophagy

    PubMed Central

    Lee, Han Nim; Kim, Jimi; Chung, Taijoon

    2014-01-01

    Peroxisomes play a critical role in many metabolic pathways during the plant life cycle. It has been proposed that the transition between different types of peroxisomes involves the degradation of obsolete peroxisomal enzymes via proteolytic activities in the peroxisome matrix, the cytosol, or the vacuole. Forward and reverse genetic studies recently provided evidence for autophagic degradation of peroxisomes in the vacuole of Arabidopsis seedlings. Here, we briefly review a model of pexophagy, or selective autophagy of peroxisomes, in plant cells. PMID:24782878

  5. Plant-Polysaccharide-Degrading Enzymes from Basidiomycetes

    PubMed Central

    Rytioja, Johanna; Hildén, Kristiina; Yuzon, Jennifer; Hatakka, Annele; de Vries, Ronald P.

    2014-01-01

    SUMMARY Basidiomycete fungi subsist on various types of plant material in diverse environments, from living and dead trees and forest litter to crops and grasses and to decaying plant matter in soils. Due to the variation in their natural carbon sources, basidiomycetes have highly varied plant-polysaccharide-degrading capabilities. This topic is not as well studied for basidiomycetes as for ascomycete fungi, which are the main sources of knowledge on fungal plant polysaccharide degradation. Research on plant-biomass-decaying fungi has focused on isolating enzymes for current and future applications, such as for the production of fuels, the food industry, and waste treatment. More recently, genomic studies of basidiomycete fungi have provided a profound view of the plant-biomass-degrading potential of wood-rotting, litter-decomposing, plant-pathogenic, and ectomycorrhizal (ECM) basidiomycetes. This review summarizes the current knowledge on plant polysaccharide depolymerization by basidiomycete species from diverse habitats. In addition, these data are compared to those for the most broadly studied ascomycete genus, Aspergillus, to provide insight into specific features of basidiomycetes with respect to plant polysaccharide degradation. PMID:25428937

  6. Autochthonous arbuscular mycorrhizal fungi and Bacillus thuringiensis from a degraded Mediterranean area can be used to improve physiological traits and performance of a plant of agronomic interest under drought conditions.

    PubMed

    Armada, Elisabeth; Azcón, Rosario; López-Castillo, Olga M; Calvo-Polanco, Mónica; Ruiz-Lozano, Juan Manuel

    2015-05-01

    Studies have shown that some microorganisms autochthonous from stressful environments are beneficial when used with autochthonous plants, but these microorganisms rarely have been tested with allochthonous plants of agronomic interest. This study investigates the effectiveness of drought-adapted autochthonous microorganisms [Bacillus thuringiensis (Bt) and a consortium of arbuscular mycorrhizal (AM) fungi] from a degraded Mediterranean area to improve plant growth and physiology in Zea mays under drought stress. Maize plants were inoculated or not with B. thuringiensis, a consortium of AM fungi or a combination of both microorganisms. Plants were cultivated under well-watered conditions or subjected to drought stress. Several physiological parameters were measured, including among others, plant growth, photosynthetic efficiency, nutrients content, oxidative damage to lipids, accumulation of proline and antioxidant compounds, root hydraulic conductivity and the expression of plant aquaporin genes. Under drought conditions, the inoculation of Bt increased significantly the accumulation of nutrients. The combined inoculation of both microorganisms decreased the oxidative damage to lipids and accumulation of proline induced by drought. Several maize aquaporins able to transport water, CO2 and other compounds were regulated by the microbial inoculants. The impact of these microorganisms on plant drought tolerance was complementary, since Bt increased mainly plant nutrition and AM fungi were more active improving stress tolerance/homeostatic mechanisms, including regulation of plant aquaporins with several putative physiological functions. Thus, the use of autochthonous beneficial microorganisms from a degraded Mediterranean area is useful to protect not only native plants against drought, but also an agronomically important plant such as maize. PMID:25813343

  7. Use of Frankia and Actinorhizal Plants for Degraded Lands Reclamation

    PubMed Central

    Diagne, Nathalie; Ngom, Mariama; Nambiar-Veetil, Mathish; Franche, Claudine; Narayanan, Krishna Kumar; Laplaze, Laurent

    2013-01-01

    Degraded lands are defined by soils that have lost primary productivity due to abiotic or biotic stresses. Among the abiotic stresses, drought, salinity, and heavy metals are the main threats in tropical areas. These stresses affect plant growth and reduce their productivity. Nitrogen-fixing plants such as actinorhizal species that are able to grow in poor and disturbed soils are widely planted for the reclamation of such degraded lands. It has been reported that association of soil microbes especially the nitrogen-fixing bacteria Frankia with these actinorhizal plants can mitigate the adverse effects of abiotic and biotic stresses. Inoculation of actinorhizal plants with Frankia significantly improves plant growth, biomass, shoot and root N content, and survival rate after transplanting in fields. However, the success of establishment of actinorhizal plantation in degraded sites depends upon the choice of effective strains of Frankia. Studies related to the beneficial role of Frankia on the establishment of actinorhizal plants in degraded soils are scarce. In this review, we describe some examples of the use of Frankia inoculation to improve actinorhizal plant performances in harsh conditions for reclamation of degraded lands. PMID:24350296

  8. Use of Frankia and actinorhizal plants for degraded lands reclamation.

    PubMed

    Diagne, Nathalie; Arumugam, Karthikeyan; Ngom, Mariama; Nambiar-Veetil, Mathish; Franche, Claudine; Narayanan, Krishna Kumar; Laplaze, Laurent

    2013-01-01

    Degraded lands are defined by soils that have lost primary productivity due to abiotic or biotic stresses. Among the abiotic stresses, drought, salinity, and heavy metals are the main threats in tropical areas. These stresses affect plant growth and reduce their productivity. Nitrogen-fixing plants such as actinorhizal species that are able to grow in poor and disturbed soils are widely planted for the reclamation of such degraded lands. It has been reported that association of soil microbes especially the nitrogen-fixing bacteria Frankia with these actinorhizal plants can mitigate the adverse effects of abiotic and biotic stresses. Inoculation of actinorhizal plants with Frankia significantly improves plant growth, biomass, shoot and root N content, and survival rate after transplanting in fields. However, the success of establishment of actinorhizal plantation in degraded sites depends upon the choice of effective strains of Frankia. Studies related to the beneficial role of Frankia on the establishment of actinorhizal plants in degraded soils are scarce. In this review, we describe some examples of the use of Frankia inoculation to improve actinorhizal plant performances in harsh conditions for reclamation of degraded lands. PMID:24350296

  9. Natural Paradigms of Plant Cell Wall Degradation

    SciTech Connect

    Wei, H.; Xu, Q.; Taylor, L. E.; Baker, J. O.; Tucker, M. P.; Ding, S. Y.

    2009-01-01

    Natural processes of recycling carbon from plant cell walls are slow but very efficient, generally involving microbial communities and their secreted enzymes. Efficient combinations of microbial communities and enzymes act in a sequential and synergistic manner to degrade plant cell walls. Recent understanding of plant cell wall ultra-structure, as well as the carbon metabolism, ATP production, and ecology of participating microbial communities, and the biochemical properties of their cellulolytic enzymes have led to new perspectives on saccharification of biomass. Microbial communities are dynamic functions of the chemical and structural compositions of plant cell wall components. The primitive 'multicellularity' exhibited by certain cellulolytic microorganisms may play a role in facilitating cell-cell communication and cell-plant cell wall-substrate interaction.

  10. Lignin degradation during plant litter photodegradation

    NASA Astrophysics Data System (ADS)

    Lin, Y.; King, J. Y.

    2014-12-01

    Lignin is the second most abundant compound, after cellulose, synthesized by plants. Numerous studies have demonstrated that initial lignin concentration is negatively correlated with litter decomposition rate under both laboratory and field conditions. Thus lignin is commonly considered to be a "recalcitrant" compound during litter decomposition. However, lignin can also serve as a radiation-absorbing compound during photodegradation, the process through which solar radiation breaks down organic matter. Here, we synthesize recent studies concerning lignin degradation during litter photodegradation and report results from our study on how photodegradation changes lignin chemistry at a molecular scale. Recent field studies have found that litter with high initial lignin concentration does not necessarily exhibit high mass loss during photodegradation. A meta-analysis (King et al. 2012) even found a weak negative correlation between initial lignin concentration and photodegradation rate. Contradicting results have been reported with regard to the change in lignin concentration during photodegradation. Some studies have found significant loss of lignin during photodegradation, while others have not. In most studies, loss of lignin only accounts for a small proportion of the overall mass loss. Using NMR spectroscopy, we found significant loss of lignin structural units containing beta-aryl ether linkages during photodegradation of a common grass litter, Bromus diandrus, even though conventional forage fiber analysis did not reveal changes in lignin concentration. Both our NMR and fiber analyses supported the idea that photodegradation induced loss of hemicellulose, which was mainly responsible for the litter mass loss during photodegradation. Our results suggest that photodegradation induces degradation, but not necessarily complete breakdown, of lignin structures and consequently exposes hemicellulose and cellulose to microbial decomposition. We conclude that lignin

  11. The effects of grassland degradation on plant diversity, primary productivity, and soil fertility in the alpine region of Asia's headwaters.

    PubMed

    Wang, Xuexia; Dong, Shikui; Yang, Bing; Li, Yuanyuan; Su, Xukun

    2014-10-01

    A 3-year survey was conducted to explore the relationships among plant composition, productivity, and soil fertility characterizing four different degradation stages of an alpine meadow in the source region of the Yangtze and Yellow Rivers, China. Results showed that plant species diversity, productivity, and soil fertility of the top 30-cm soil layer significantly declined with degradation stages of alpine meadow over the study period. The productivity of forbs significantly increased with degradation stages, and the soil potassium stock was not affected by grassland degradation. The vegetation composition gradually shifted from perennial graminoids (grasses and sedges) to annual forbs along the degradation gradient. The abrupt change of response in plant diversity, plant productivity, and soil nutrients was demonstrated after heavy grassland degradation. Moreover, degradation can indicate plant species diversity and productivity through changing soil fertility. However, the clear relationships are difficult to establish. In conclusion, degradation influenced ecosystem function and services, such as plant species diversity, productivity, and soil carbon and nitrogen stocks. Additionally, both plant species diversity and soil nutrients were important predictors in different degradation stages of alpine meadows. To this end, heavy degradation grade was shown to cause shift of plant community in alpine meadow, which provided an important basis for sustaining ecosystem function, manipulating the vegetation composition of the area and restoring the degraded alpine grassland. PMID:25023744

  12. Role of Ubiquitin-Mediated Degradation System in Plant Biology.

    PubMed

    Sharma, Bhaskar; Joshi, Deepti; Yadav, Pawan K; Gupta, Aditya K; Bhatt, Tarun K

    2016-01-01

    Ubiquitin-mediated proteasomal degradation is an important mechanism to control protein load in the cells. Ubiquitin binds to a protein on lysine residue and usually promotes its degradation through 26S proteasome system. Abnormal proteins and regulators of many processes, are targeted for degradation by the ubiquitin-proteasome system. It allows cells to maintain the response to cellular level signals and altered environmental conditions. The ubiquitin-mediated proteasomal degradation system plays a key role in the plant biology, including abiotic stress, immunity, and hormonal signaling by interfering with key components of these pathways. The involvement of the ubiquitin system in many vital processes led scientists to explore more about the ubiquitin machinery and most importantly its targets. In this review, we have summarized recent discoveries of the plant ubiquitin system and its involvement in critical processes of plant biology. PMID:27375660

  13. Role of Ubiquitin-Mediated Degradation System in Plant Biology

    PubMed Central

    Sharma, Bhaskar; Joshi, Deepti; Yadav, Pawan K.; Gupta, Aditya K.; Bhatt, Tarun K.

    2016-01-01

    Ubiquitin-mediated proteasomal degradation is an important mechanism to control protein load in the cells. Ubiquitin binds to a protein on lysine residue and usually promotes its degradation through 26S proteasome system. Abnormal proteins and regulators of many processes, are targeted for degradation by the ubiquitin-proteasome system. It allows cells to maintain the response to cellular level signals and altered environmental conditions. The ubiquitin-mediated proteasomal degradation system plays a key role in the plant biology, including abiotic stress, immunity, and hormonal signaling by interfering with key components of these pathways. The involvement of the ubiquitin system in many vital processes led scientists to explore more about the ubiquitin machinery and most importantly its targets. In this review, we have summarized recent discoveries of the plant ubiquitin system and its involvement in critical processes of plant biology. PMID:27375660

  14. Methods for degrading or converting plant cell wall polysaccharides

    DOEpatents

    Berka, Randy; Cherry, Joel

    2008-08-19

    The present invention relates to methods for converting plant cell wall polysaccharides into one or more products, comprising: treating the plant cell wall polysaccharides with an effective amount of a spent whole fermentation broth of a recombinant microorganism, wherein the recombinant microorganism expresses one or more heterologous genes encoding enzymes which degrade or convert the plant cell wall polysaccharides into the one or more products. The present invention also relates to methods for producing an organic substance, comprising: (a) saccharifying plant cell wall polysaccharides with an effective amount of a spent whole fermentation broth of a recombinant microorganism, wherein the recombinant microorganism expresses one or more heterologous genes encoding enzymes which degrade or convert the plant cell wall polysaccharides into saccharified material; (b) fermenting the saccharified material of step (a) with one or more fermenting microoganisms; and (c) recovering the organic substance from the fermentation.

  15. Bacterial secondary production on vascular plant detritus: relationships to detritus composition and degradation rate.

    PubMed Central

    Moran, M A; Hodson, R E

    1989-01-01

    Bacterial production at the expense of vascular plant detritus was measured for three emergent plant species (Juncus effusus, Panicum hemitomon, and Typha latifolia) degrading in the littoral zone of a thermally impacted lake. Bacterial secondary production, measured as tritiated thymidine incorporation into DNA, ranged from 0.01 to 0.81 microgram of bacterial C mg of detritus-1 day-1. The three plant species differed with respect to the amount of bacterial productivity they supported per milligram of detritus, in accordance with the predicted biodegradability of the plant material based on initial nitrogen content, lignin content, and C/N ratio. Bacterial production also varied throughout the 22 weeks of in situ decomposition and was positively related to the nitrogen content and lignin content of the remaining detritus, as well as to the temperature of the lake water. Over time, production was negatively related to the C/N ratio and cellulose content of the degrading plant material. Bacterial production on degrading plant material was also calculated on the basis of plant surface area and ranged from 0.17 to 1.98 micrograms of bacterial C cm-2 day-1. Surface area-based calculations did not correlate well with either initial plant composition or changing composition of the remaining detritus during decomposition. The rate of bacterial detritus degradation, calculated from measured production of surface-attached bacteria, was much lower than the actual rate of weight loss of plant material. This discrepancy may be attributable to the importance of nonbacterial organisms in the degradation and loss of plant material from litterbags or to the microbially mediated solubilization of particulate material prior to bacterial utilization, or both. PMID:2802603

  16. Aspergillus Enzymes Involved in Degradation of Plant Cell Wall Polysaccharides

    PubMed Central

    de Vries, Ronald P.; Visser, Jaap

    2001-01-01

    Degradation of plant cell wall polysaccharides is of major importance in the food and feed, beverage, textile, and paper and pulp industries, as well as in several other industrial production processes. Enzymatic degradation of these polymers has received attention for many years and is becoming a more and more attractive alternative to chemical and mechanical processes. Over the past 15 years, much progress has been made in elucidating the structural characteristics of these polysaccharides and in characterizing the enzymes involved in their degradation and the genes of biotechnologically relevant microorganisms encoding these enzymes. The members of the fungal genus Aspergillus are commonly used for the production of polysaccharide-degrading enzymes. This genus produces a wide spectrum of cell wall-degrading enzymes, allowing not only complete degradation of the polysaccharides but also tailored modifications by using specific enzymes purified from these fungi. This review summarizes our current knowledge of the cell wall polysaccharide-degrading enzymes from aspergilli and the genes by which they are encoded. PMID:11729262

  17. Hydrocarbon degradation potential of salt marsh plant-microorganisms associations.

    PubMed

    Ribeiro, Hugo; Mucha, Ana P; Almeida, C Marisa R; Bordalo, Adriano A

    2011-07-01

    Estuaries are often considered sinks for contaminants and the cleanup of salt marshes, sensitive ecosystems with a major ecological role, should be carried out by means of least intrusive approaches, such as bioremediation. This study was designed to evaluate the influence of plant-microorganisms associations on petroleum hydrocarbons fate in salt marshes of a temperate estuary (Lima River, NW Portugal). Sediments un-colonized and colonized (rhizosediments) by different plants (Juncus maritimus, Phragmites australis, Triglochin striata and Spartina patens) were sampled in four sites of the lower and middle estuary for hydrocarbon degrading microorganisms (HD), total cell counts (TCC) and total petroleum hydrocarbons (TPHs) assessment. In general, TPHs, HD and TCC were significantly higher (P < 0.05) in rhizosediments than in un-colonized sediments. Also recorded were differences on the abundance of hydrocarbon degraders among the rhizosediment of the different plants collected at the same site (J. maritimus < P. australis < T. striata), with statistically significant differences (P < 0.05) between J. maritimus and T. striata. Moreover, strong positive correlations-0.81 and 0.84 (P < 0.05), between biotic (HD) and abiotic (organic matter content) parameters and TPHs concentrations were also found. Our data clearly suggest that salt marsh plants can influence the microbial community, by fostering the development of hydrocarbon-degrading microbial populations in its rhizosphere, an effect observed for all plants. This effect, combined with the plant capability to retain hydrocarbons around the roots, points out that salt marsh plant-microorganisms associations may actively contribute to hydrocarbon removal and degradation in estuarine environments. PMID:21188477

  18. Role of proteolytic enzymes in degradation of plant tissues

    SciTech Connect

    Lewosz, J.; Kelman, A.; Sequeira, L.

    1991-01-01

    Strain SR 394 of Erwinia carotovora (Ecc) produced proteases constitutively in all media tested. Growth of Ecc and production of protease were enhanced significantly by the presence of poetic materials and/or plant call walls in the test media. After electrofocusing, one major and one minor protease bands, at PI 4.8 and PI 5.1, respectively, were detected. Only one band of 43 kDa was detected on SDS gels. Only one protease band was detected in SDS gels of infected plant extracts. This protease was purified to homogeneity. It in a highly thermostable metal protease; it degrades gelatin, soluble collagen and hide powderazure, shows weak activity on casein and azocasein, but does not degrade insoluble collagen or elastin.

  19. Degradation of textile dyes mediated by plant peroxidases.

    PubMed

    Shaffiqu, T S; Roy, J Jegan; Nair, R Aswathi; Abraham, T Emilia

    2002-01-01

    The peroxidase enzyme from the plants Ipomea palmata (1.003 IU/g of leaf) and Saccharum spontaneum (3.6 IU/g of leaf) can be used as an alternative to the commercial source of horseradish and soybean peroxidase enzyme for the decolorization of textile dyes, mainly azo dyes. Eight textiles dyes currently used by the industry and seven other dyes were selected for decolorization studies at 25-200 mg/L levels using these plant enzymes. The enzymes were purified prior to use by ammonium sulfate precipitation, and ion exchange and gel permeation chromatographic techniques. Peroxidase of S. spontaneum leaf (specific activity of 0.23 IU/mg) could completely degrade Supranol Green and Procion Green HE-4BD (100%) dyes within 1 h, whereas Direct Blue, Procion Brilliant Blue H-7G and Chrysoidine were degraded >70% in 1 h. Peroxidase of Ipomea (I. palmata leaf; specific activity of 0.827 U/mg) degraded 50 mg/L of the dyes Methyl Orange (26%), Crystal Violet (36%), and Supranol Green (68%) in 2-4 h and Brilliant Green (54%), Direct Blue (15%), and Chrysoidine (44%) at the 25 mg/L level in 1 to 2 h of treatment. The Saccharum peroxidase was immobilized on a hydrophobic matrix. Four textile dyes, Procion Navy Blue HER, Procion Brilliant Blue H-7G, Procion Green HE-4BD, and Supranol Green, at an initial concentration of 50 mg/L were completely degraded within 8 h by the enzyme immobilized on the modified polyethylene matrix. The immobilized enzyme was used in a batch reactor for the degradation of Procion Green HE-4BD and the reusability was studied for 15 cycles, and the half-life was found to be 60 h. PMID:12396133

  20. Influence of different salt marsh plants on hydrocarbon degrading microorganisms abundance throughout a phenological cycle.

    PubMed

    Ribeiro, Hugo; Almeida, C Marisa R; Mucha, Ana Paula; Bordalo, Adriano A

    2013-01-01

    The influence of Juncus maritimus, Phragmites australis, and Triglochin striata on hydrocarbon degrading microorganisms (HD) in Lima River estuary (NW Portugal) was investigated through a year-long plant life cycle. Sediments un-colonized and colonized (rhizosediments) by those salt marsh plants were sampled for HD, total cell counts (TCC), and total petroleum hydrocarbons (TPHs) assessment. Generally, TCC seemed to be markedly thriving by the presence of roots, but without significant (p > 0.05) differences among rhizosediments. Nevertheless, plants seemed to have a distinct influence on HD abundance, particularly during the flowering season, with higher HD abundance in the rhizosediments of the fibrous roots plants (J. maritimus < P. australis < T. striata). Our data suggest that different plants have distinct influence on the dynamics of HD populations within its own rhizosphere, particularly during the flowering season, suggesting a period of higher rhizoremediation activity. Additionally, during the vegetative period, plants with fibrous and dense root system tend to retain hydrocarbons around their belowground tissues more efficiently than plants with adventitious root system. Overall results indicate that fibrous root plants have a higher potential to promote hydrocarbons degradation, and that seasonality should be taken into account when designing long-term rhizoremediation strategies in estuarine areas. PMID:23819270

  1. Enantioselective degradation of metalaxyl in grape, tomato, and rice plants.

    PubMed

    Wang, Meiyun; Hua, Xiude; Zhang, Qing; Yang, Yu; Shi, Haiyan; Wang, Minghua

    2015-02-01

    Enantioselective biodegradation of chiral pesticide metalaxyl in grape, tomato, and rice plants under field conditions were studied. Metalaxyl enantiomers were completely separated with a resolution (Rs) of 5.01 by high-performance liquid chromatography (HPLC) based on a cellulose tris (3-chloro-4-methyl phenyl carbamate) chiral column (Lux Cellulose-2). Metalaxyl enantiomers from matrixes were extracted by acetonitrile and purged using Cleanert Alumina-A solid phase extraction (SPE). The linearity, recovery, precision, sensitivity, and matrix effect of the method were assessed. The result showed that significant stereoselectivity occurred in grape, tomato, and rice plants. In grape, (+)-S-metalaxyl with a half-life of 5.5 d degraded faster than (-)-R-metalaxyl with that of 6.9 d, and the enantiomer fraction (EF) value reached 0.37 at 21 d. The same enantioselectivity was observed in tomato, and the half-life was 2.2 d for the S-enantiomer and 3.0 d for the R-enantiomer. The EF values decreased from 0.49 of 0 d to 0.26 of 14 d. On the other hand, a preferential degradation of the R-form was found in rice plants, with an EF value of 0.70 at 14 d, and the corresponding half-life was 2.3 d for the R-form and 2.8 d for the S-form. PMID:25311959

  2. Proactive Management of Materials Degradation for Nuclear Power Plant Systems

    SciTech Connect

    Bond, Leonard J.; Taylor, Theodore T.; Doctor, Steven R.; Hull, Amy; Malik, Shah

    2008-09-01

    There are approximately 440 operating reactors in the global nuclear power plant (NPP) fleet, and these have an average age greater than 20 years. These NPPs had design lives of 30 or 40 years. The United States is currently implementing license extensions of 20 years on many plants and consideration is now being given to the concept of “life-beyond-60,” a further period of license extension from 60 to 80 years, and potentially longer. In almost all countries with NPPs, authorities are looking at some form of license renewal program. There is a growing urgency as a number of plants face either approvals for license extension or shut down, which will require deployment of new power plants. In support of NPP license extension over the past decade, various national and international programs have been initiated. This paper reports part of the work performed in support of the U.S. Nuclear Regulatory Commission’s (NRC’s) Proactive Management of Materials Degradation (PMMD) program. The paper concisely explains the basic principles of PMMD, its relationship to advanced diagnostics and prognostics and provides an assessment of some the technical gaps in PMMD and prognostics that need to be addressed.

  3. Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Discovery and development of novel plant cell wall degrading enzymes is a key step towards more efficient depolymerization of polysaccharides to fermentable sugars for production of liquid transportation biofuels and other bioproducts. The industrial fungus Trichoderma reesei is known to be highly c...

  4. Consolidated pretreatment and hydrolysis of plant biomass expressing cell wall degrading enzymes

    DOEpatents

    Raab, R. Michael; Zhang, Dongcheng; Bougri, Oleg

    2016-02-02

    Methods for consolidated pretreatment and hydrolysis of genetically engineered plants expressing cell wall degrading enzymes are provided. Expression cassettes and vectors for making transgenic plants are described. Plants engineered to express one or more cell wall degrading enzymes using expression cassettes and vectors of the invention are also provided.

  5. Biostimulation of PCB-degrading bacteria by compounds released from plant roots

    SciTech Connect

    Fletcher, J.S.; Hegde, R.S.; Donnelly, P.K.

    1995-12-31

    Flavonoid and coumarin compounds produced by plants supported the growth of polychlorinated biphenyl (PCB)-degrading bacteria, and the bacteria retained their PCB-degrading properties. Root leachates and washings from mulberry trees also supported the growth of a PCB-degrading bacterium. These results indicate that chemicals released by some plant roots may serve as cometabolites for PCB-degrading bacteria. Identification of the right plant species and development of appropriate cultivation practices promises to lead to an ecologically sound means to achieve sustained in situ degradation of PCBs at contaminated terrestrial sites.

  6. Modeling Hawaiian ecosystem degradation due to invasive plants under current and future climates

    USGS Publications Warehouse

    Vorsino, Adam E.; Fortini, Lucas B.; Amidon, Fred A.; Miller, Stephen E.; Jacobi, James D.; Price, Jonathan P.; `Ohukani`ohi`a Gon, Sam, III; Koob, Gregory A.

    2014-01-01

    Occupation of native ecosystems by invasive plant species alters their structure and/or function. In Hawaii, a subset of introduced plants is regarded as extremely harmful due to competitive ability, ecosystem modification, and biogeochemical habitat degradation. By controlling this subset of highly invasive ecosystem modifiers, conservation managers could significantly reduce native ecosystem degradation. To assess the invasibility of vulnerable native ecosystems, we selected a proxy subset of these invasive plants and developed robust ensemble species distribution models to define their respective potential distributions. The combinations of all species models using both binary and continuous habitat suitability projections resulted in estimates of species richness and diversity that were subsequently used to define an invasibility metric. The invasibility metric was defined from species distribution models with 0.8; True Skill Statistic >0.75) as evaluated per species. Invasibility was further projected onto a 2100 Hawaii regional climate change scenario to assess the change in potential habitat degradation. The distribution defined by the invasibility metric delineates areas of known and potential invasibility under current climate conditions and, when projected into the future, estimates potential reductions in native ecosystem extent due to climate-driven invasive incursion. We have provided the code used to develop these metrics to facilitate their wider use (Code S1). This work will help determine the vulnerability of native-dominated ecosystems to the combined threats of climate change and invasive species, and thus help prioritize ecosystem and species management actions.

  7. Mountain pastures of Qilian Shan: plant communities, grazing impact and degradation status (Gansu province, NW China)

    NASA Astrophysics Data System (ADS)

    Baranova, Alina; Schickhoff, Udo; Shunli, Wang; Ming, Jin

    2015-04-01

    Qilian Mountains are the water source region for the low arid reaches of HeiHe river basin (Gansu province, NW China). Due to overstocking and overgrazing during the last decades adverse ecological ef¬fects, in particular on soil properties and hydrological cycle, are to be expected in growing land areas. Vegetation cover is very important to prevent erosion process and to sustain stable subsurface runoff and ground water flow. The aim of this research is to identify plant communities, detecting grazing-induced and spatially differentiated changes in vegetation patterns, and to evaluate status of pasture land degradation.The study area is located in the spring/autumn pasture area of South Qilian Mountains between 2600-3600 m a.s.l., covering five main vegetation types: spruce forest, alpine shrubland, shrubby grassland, mountain grassland, degraded mountain grassland. In order to analyze gradual changes in vegetation patterns along altitudinal and grazing gradients and to classify related plant communities, quantitative and qualitative relevé data were collected (coverage, species composition, abundance of unpalatable plants, plant functional types, etc.). Vegetation was classified using hierarchical cluster analyses. Indirect Detrended Correspondence Analysis (DCA) was used to analyze variation in relationships between vegetation, environmental factors, and grazing impact. According to DCA results, distribution of the plant communities was strongly affected by altitude and exposition. Grassland floristic gradients showed greater dependence on grazing impact, which correlated contrarily with soil organic content, soil moisture and pH. Highest numbers of species richness and alpha diversity were detected in alpine shrubland vegetation type. Comparing the monitoring data for the recent nine years, a trend of deterioration, species successions and shift in dominant species becomes obvious. Species indicating degrading site environmental conditions were identified

  8. AGE-RELATED DEGRADATION OF NUCLEAR POWER PLANT STRUCTURES AND COMPONENTS.

    SciTech Connect

    BRAVERMAN,J.

    1999-03-29

    This paper summarizes and highlights the results of the initial phase of a research project on the assessment of aged and degraded structures and components important to the safe operation of nuclear power plants (NPPs). A review of age-related degradation of structures and passive components at NPPs was performed. Instances of age-related degradation have been collected and reviewed. Data were collected from plant generated documents such as Licensing Event Reports, NRC generic communications, NUREGs and industry reports. Applicable cases of degradation occurrences were reviewed and then entered into a computerized database. The results obtained from the review of degradation occurrences are summarized and discussed. Various trending analyses were performed to identify which structures and components are most affected, whether degradation occurrences are worsening, and what are the most common aging mechanisms. The paper also discusses potential aging issues and degradation-susceptible structures and passive components which would have the greatest impact on plant risk.

  9. Age-Related Degradation of Nuclear Power Plant Structures and Components

    SciTech Connect

    Braverman, J.; Chang, T.-Y.; Chokshi, N.; Hofmayer, C.; Morante, R.; Shteyngart, S.

    1999-03-29

    This paper summarizes and highlights the results of the initial phase of a research project on the assessment of aged and degraded structures and components important to the safe operation of nuclear power plants (NPPs). A review of age-related degradation of structures and passive components at NPPs was performed. Instances of age-related degradation have been collected and reviewed. Data were collected from plant generated documents such as Licensing Event Reports, NRC generic communications, NUREGs and industry reports. Applicable cases of degradation occurrences were reviewed and then entered into a computerized database. The results obtained from the review of degradation occurrences are summarized and discussed. Various trending analyses were performed to identify which structures and components are most affected, whether degradation occurrences are worsening, and what was the most common aging mechanisms. The paper also discusses potential aging issues and degradation-susceptible structures and passive components which would have the greatest impact on plant risk.

  10. Estimating vegetation vulnerability to detect areas prone to land degradation in the Mediterranean basin

    NASA Astrophysics Data System (ADS)

    Imbrenda, Vito; Coluzzi, Rosa; D'Emilio, Mariagrazia; Lanfredi, Maria; Simoniello, Tiziana

    2013-04-01

    Vegetation is one of the key components to study land degradation vulnerability because of the complex interactions and feedbacks that link it to soil. In the Mediterranean region, degradation phenomena are due to a mix of predisposing factors (thin soil horizons, low soil organic matter, increasing aridity, etc.) and bad management practices (overgrazing, deforestation, intensification of agriculture, tourism development). In particular, in areas threatened by degradation processes but still covered by vegetation, large scale soil condition evaluation is a hard task and the detection of stressed vegetation can be useful to identify on-going soil degradation phenomena and to reduce their impacts through interventions for recovery/rehabilitation. In this context the use of satellite time series can increase the efficacy and completeness of the land degradation assessment, providing precious information to understand vegetation dynamics. In order to estimate vulnerability levels in Basilicata (a Mediterranean region of Southern Italy) in the framework of PRO-LAND project (PO-FESR Basilicata 2007-2013), we crossed information on potential vegetation vulnerability with information on photosynthetic activity dynamics. Potential vegetation vulnerability represents the vulnerability related to the type of present cover in terms of fire risk, erosion protection, drought resistance and plant cover distribution. It was derived from an updated land cover map by separately analyzing each factor, and then by combining them to obtain concise information on the possible degradation exposure. The analysis of photosynthetic activity dynamics provides information on the status of vegetation, that is fundamental to discriminate the different vulnerability levels within the same land cover, i.e. the same potential vulnerability. For such a purpose, we analyzed a time series (2000-2010) of a satellite vegetation index (MODIS NDVI) with 250m resolution, available as 16-day composite

  11. Determination of cypermethrin degradation potential of soil bacteria along with plant growth-promoting characteristics.

    PubMed

    Akbar, Shamsa; Sultan, Sikander; Kertesz, Michael

    2015-01-01

    The pyrethroid insecticide cypermethrin is in extensive use since 1980s for insect control. However, its toxicity toward aquatic animals and humans requires its complete removal from contaminated areas that can be done using indigenous microbes through bioremediation. In this study, three bacterial strains isolated from agricultural soil and identified as Acinetobacter calcoaceticus MCm5, Brevibacillus parabrevis FCm9, and Sphingomonas sp. RCm6 were found highly efficient in degrading cypermethrin and other pyrethroids. These bacterial strains were able to degrade more than 85 % of cypermethrin (100 mg L(-1)) within 10 days. Degradation kinetics of cypermethrin (200 mg kg(-1)) in soils inoculated with isolates MCm5, FCm9, and RCm6 suggested time-dependent disappearance of cypermethrin with rate constants of 0.0406, 0.0722, and 0.0483 d(-1) following first-order rate kinetics. Enzyme assays for Carboxylesterase, 3-PBA dioxygenase, Phenol hydroxylase, and Catechol-1,2 dioxygenase showed higher activities with cypermethrin treated cell-free extracts compared to non-treated cell-free extracts. Meanwhile, SDS-PAGE analysis showed upregulation of some bands in cypermethrin-treated cells. This might suggest that cypermethrin degradation in these strains involves inducible enzymes. Besides, the isolates displayed substantial plant growth-promoting traits such as phosphate solubilization, Indole acetic acid production, and ammonia production. Implying the efficient biodegradation potential along with multiple biological properties, these isolates can be valuable candidates for the development of bioremediation strategies. PMID:25194282

  12. Molecular mechanisms associated with xylan degradation by Xanthomonas plant pathogens.

    PubMed

    Santos, Camila Ramos; Hoffmam, Zaira Bruna; de Matos Martins, Vanesa Peixoto; Zanphorlin, Leticia Maria; de Paula Assis, Leandro Henrique; Honorato, Rodrigo Vargas; Lopes de Oliveira, Paulo Sérgio; Ruller, Roberto; Murakami, Mario Tyago

    2014-11-14

    Xanthomonas pathogens attack a variety of economically relevant plants, and their xylan CUT system (carbohydrate utilization with TonB-dependent outer membrane transporter system) contains two major xylanase-related genes, xynA and xynB, which influence biofilm formation and virulence by molecular mechanisms that are still elusive. Herein, we demonstrated that XynA is a rare reducing end xylose-releasing exo-oligoxylanase and not an endo-β-1,4-xylanase as predicted. Structural analysis revealed that an insertion in the β7-α7 loop induces dimerization and promotes a physical barrier at the +2 subsite conferring this unique mode of action within the GH10 family. A single mutation that impaired dimerization became XynA active against xylan, and high endolytic activity was achieved when this loop was tailored to match a canonical sequence of endo-β-1,4-xylanases, supporting our mechanistic model. On the other hand, the divergent XynB proved to be a classical endo-β-1,4-xylanase, despite the low sequence similarity to characterized GH10 xylanases. Interestingly, this enzyme contains a calcium ion bound nearby to the glycone-binding region, which is required for catalytic activity and structural stability. These results shed light on the molecular basis for xylan degradation by Xanthomonas and suggest how these enzymes synergistically assist infection and pathogenesis. Our findings indicate that XynB contributes to breach the plant cell wall barrier, providing nutrients and facilitating the translocation of effector molecules, whereas the exo-oligoxylanase XynA possibly participates in the suppression of oligosaccharide-induced immune responses. PMID:25266726

  13. Can post-wildfire Burned Area Emergency Response treatments mitigate watershed degradation?

    NASA Astrophysics Data System (ADS)

    Neary, D.; Ffolliott, P.; Bautista, S.; Wittenberg, L.

    2009-04-01

    Wildfire is a natural phenomenon that began with the development of terrestrial vegetation in a lightning-filled atmosphere 350 million years ago. As human populations developed in the Pleistocene and Holocene epochs, mankind transformed fire into one of its oldest tools. A negative impact of prime concern in the 21st Century is desertification. This term refers to land degradation, not the immediate creation of classical deserts. It is about the loss of the land's proper hydrologic function and biological productivity as a result of human activities and climate change. It affects 33% of the earth's surface and over a billion people. Fire-related desertification has a number of environmental, social, and economic consequences. The two key environmental consequences are soil erosion and exotic plant invasions. Wildfires typically have exotic plant species abundances ten times that of undisturbed forests (Neary et al. 2003). Seeding has been used for many years in the USA as a prime Burned Area Emergency Response (BAER) treatment. Until recently, this seeding contributed to exotic plant invasions since fast-growing, but non native plants seeds were used. The use of native plant seeds and sterile hybrids has reduced this problem somewhat. Erosion after wildfires documented in the USA can be in the range of <1 to 370 Mg/ha, depending on fire severity, degree of water repellency, slope, and post-fire rainfall events. Soil losses in the high end of that range definitely exceed soil loss tolerances and contribute to desertification. Soil disturbance and degradation after wildfires is a function of fire severity, and the impacts can range from the minimal to catastrophic and long-lasting. The most obvious impact is the loss of organic matter from combustion of the forest floor. Changes in soil physical and chemical properties with high-severity wildfire can produce water repellency, aggravating rainfall runoff and erosion. Since soils take long times to form (50 to 75

  14. Modeling Hawaiian ecosystem degradation due to invasive plants under current and future climates.

    PubMed

    Vorsino, Adam E; Fortini, Lucas B; Amidon, Fred A; Miller, Stephen E; Jacobi, James D; Price, Jonathan P; Gon, Sam 'ohukani'ohi'a; Koob, Gregory A

    2014-01-01

    Occupation of native ecosystems by invasive plant species alters their structure and/or function. In Hawaii, a subset of introduced plants is regarded as extremely harmful due to competitive ability, ecosystem modification, and biogeochemical habitat degradation. By controlling this subset of highly invasive ecosystem modifiers, conservation managers could significantly reduce native ecosystem degradation. To assess the invasibility of vulnerable native ecosystems, we selected a proxy subset of these invasive plants and developed robust ensemble species distribution models to define their respective potential distributions. The combinations of all species models using both binary and continuous habitat suitability projections resulted in estimates of species richness and diversity that were subsequently used to define an invasibility metric. The invasibility metric was defined from species distribution models with <0.7 niche overlap (Warrens I) and relatively discriminative distributions (Area Under the Curve >0.8; True Skill Statistic >0.75) as evaluated per species. Invasibility was further projected onto a 2100 Hawaii regional climate change scenario to assess the change in potential habitat degradation. The distribution defined by the invasibility metric delineates areas of known and potential invasibility under current climate conditions and, when projected into the future, estimates potential reductions in native ecosystem extent due to climate-driven invasive incursion. We have provided the code used to develop these metrics to facilitate their wider use (Code S1). This work will help determine the vulnerability of native-dominated ecosystems to the combined threats of climate change and invasive species, and thus help prioritize ecosystem and species management actions. PMID:24805254

  15. Modeling Hawaiian ecosystem degradation due to invasive plants under current and future climates.

    PubMed

    Vorsino, Adam E; Fortini, Lucas B; Amidon, Fred A; Miller, Stephen E; Jacobi, James D; Price, Jonathan P; 'Ohukani'ohi'a Gon, Sam; Koob, Gregory A

    2014-01-01

    Occupation of native ecosystems by invasive plant species alters their structure and/or function. In Hawaii, a subset of introduced plants is regarded as extremely harmful due to competitive ability, ecosystem modification, and biogeochemical habitat degradation. By controlling this subset of highly invasive ecosystem modifiers, conservation managers could significantly reduce native ecosystem degradation. To assess the invasibility of vulnerable native ecosystems, we selected a proxy subset of these invasive plants and developed robust ensemble species distribution models to define their respective potential distributions. The combinations of all species models using both binary and continuous habitat suitability projections resulted in estimates of species richness and diversity that were subsequently used to define an invasibility metric. The invasibility metric was defined from species distribution models with <0.7 niche overlap (Warrens I) and relatively discriminative distributions (Area Under the Curve >0.8; True Skill Statistic >0.75) as evaluated per species. Invasibility was further projected onto a 2100 Hawaii regional climate change scenario to assess the change in potential habitat degradation. The distribution defined by the invasibility metric delineates areas of known and potential invasibility under current climate conditions and, when projected into the future, estimates potential reductions in native ecosystem extent due to climate-driven invasive incursion. We have provided the code used to develop these metrics to facilitate their wider use (Code S1). This work will help determine the vulnerability of native-dominated ecosystems to the combined threats of climate change and invasive species, and thus help prioritize ecosystem and species management actions. PMID:24991934

  16. Modeling Hawaiian Ecosystem Degradation due to Invasive Plants under Current and Future Climates

    PubMed Central

    Vorsino, Adam E.; Fortini, Lucas B.; Amidon, Fred A.; Miller, Stephen E.; Jacobi, James D.; Price, Jonathan P.; Gon, Sam 'Ohukani'ohi'a; Koob, Gregory A.

    2014-01-01

    Occupation of native ecosystems by invasive plant species alters their structure and/or function. In Hawaii, a subset of introduced plants is regarded as extremely harmful due to competitive ability, ecosystem modification, and biogeochemical habitat degradation. By controlling this subset of highly invasive ecosystem modifiers, conservation managers could significantly reduce native ecosystem degradation. To assess the invasibility of vulnerable native ecosystems, we selected a proxy subset of these invasive plants and developed robust ensemble species distribution models to define their respective potential distributions. The combinations of all species models using both binary and continuous habitat suitability projections resulted in estimates of species richness and diversity that were subsequently used to define an invasibility metric. The invasibility metric was defined from species distribution models with <0.7 niche overlap (Warrens I) and relatively discriminative distributions (Area Under the Curve >0.8; True Skill Statistic >0.75) as evaluated per species. Invasibility was further projected onto a 2100 Hawaii regional climate change scenario to assess the change in potential habitat degradation. The distribution defined by the invasibility metric delineates areas of known and potential invasibility under current climate conditions and, when projected into the future, estimates potential reductions in native ecosystem extent due to climate-driven invasive incursion. We have provided the code used to develop these metrics to facilitate their wider use (Code S1). This work will help determine the vulnerability of native-dominated ecosystems to the combined threats of climate change and invasive species, and thus help prioritize ecosystem and species management actions. PMID:24805254

  17. SOILING DEGRADATION BY ATMOSPHERIC AEROSOLS IN AN RBAN INDUSTRIAL AREA

    EPA Science Inventory

    Particulate matter deposited from atmospheric aerosols during a thirteen week study in Elizabeth, N.J. was examined in an attempt to identify the portion of the aerosol primarily responsible for soiling degradation. White painted panels were exposed to the atmosphere in sheltered...

  18. Rehabilitation of invasive-tree degraded natural areas through biological control: a slow but steady process

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Natural areas invaded by invasive exotic plants can develop into monocultures as native plants are displaced. The Australian tree Melaleuca quinquenervia (melaleuca) impacts natural areas in this manner in southern Florida. Environmental plasticity coupled with fire resistance, high reproductive po...

  19. [Spatiotemporal differentiation of land cover change and grassland degradation pattern in Yangtze River headwaters area].

    PubMed

    Guo, Luo; Du, Shi-Hong; Xue, Da-Yuan; Cai, Liang

    2012-05-01

    Based on field survey data, remote sensing images and statistical data, this paper analyzed the spatiotemporal differentiation of land use and grassland degradation patterns in Yangtze River headwaters area in 1987-2007, and discussed the main natural factors (elevation, position and slope) leading to the changes of this area's grassland ecological environment. In 1987-2007, the fragmentation of this area' s landscape patterns had an increasing trend, and natural environment and climate change were the main driving forces of land use pattern change. There existed significant differences in the areas of grassland degradation at different altitudes. Grassland degradation mainly occurred at altitudes 4800-5100 m. The grassland degradation area tended to increase with increasing elevation, and the proportions of the degradation area varied greatly over different slopes and aspects. The climate in the study area became warm and dry, and the spatial structure of regional land cover changed obviously. The distribution patterns of grassland degradation at different elevation, position and slope coincided with alpine environment and human disturbances, suggesting that alpine environment and climatic change were the decisive factors to the grassland ecosystem pattern in Yangtze River headwaters area. PMID:22919830

  20. Results of a screening programme to identify plants or plant extracts that inhibit ruminal protein degradation.

    PubMed

    Selje, N; Hoffmann, E M; Muetzel, S; Ningrat, R; Wallace, R J; Becker, K

    2007-07-01

    One aim of the EC Framework V project, 'Rumen-up' (QLK5-CT-2001-00 992), was to find plants or plant extracts that would inhibit the nutritionally wasteful degradation of protein in the rumen. A total of 500 samples were screened in vitro using 14C-labelled casein in a 30-min incubation with ruminal digesta. Eight were selected for further investigation using a batch fermentation system and soya protein and bovine serum albumin as proteolysis substrates; proteolysis was monitored over 12 h by the disappearance of soluble protein and the production of branched SCFA and NH3. Freeze-dried, ground foliage of Peltiphyllum peltatum, Helianthemum canum, Arbutus unedo, Arctostaphylos uva-ursi and Knautia arvensis inhibited proteolysis (P < 0.05), while Daucus carota, Clematis vitalba and Erica arborea had little effect. Inhibition by the first four samples appeared to be caused by the formation of insoluble tannin-protein complexes. The samples were rich in phenolics and inhibition was reversed by polyethyleneglycol. In contrast, K. arvensis contained low concentrations of phenolics and no tannins, had no effect in the 30-min assay, yet inhibited the degradation rate of soluble protein (by 14 %, P < 0.0001) and the production of branched SCFA (by 17 %, P < 0.05) without precipitating protein in the 12-h batch fermentation. The effects showed some resemblance to those obtained in parallel incubations containing 3 mum-monensin, suggesting that K. arvensis may be a plant-derived feed additive that can suppress growth and activity of key proteolytic ruminal micro-organisms in a manner similar to that already well known for monensin. PMID:17445338

  1. Bacterial structure and characterization of plant growth promoting and oil degrading bacteria from the rhizospheres of mangrove plants.

    PubMed

    do Carmo, Flávia Lima; dos Santos, Henrique Fragoso; Martins, Edir Ferreira; van Elsas, Jan Dirk; Rosado, Alexandre Soares; Peixoto, Raquel Silva

    2011-08-01

    Most oil from oceanic spills converges on coastal ecosystems, such as mangrove forests, which are threatened with worldwide disappearance. Particular bacteria that inhabit the rhizosphere of local plant species can stimulate plant development through various mechanisms; it would be advantageous if these would also be capable of degrading oil. Such bacteria may be important in the preservation or recuperation of mangrove forests impacted by oil spills. This study aimed to compare the bacterial structure, isolate and evaluate bacteria able to degrade oil and stimulate plant growth, from the rhizospheres of three mangrove plant species. These features are particularly important taking into account recent policies for mangrove bioreme-diation, implying that oil degradation as well as plant maintenance and health are key targets. Fifty-seven morphotypes were isolated from the mangrove rhizospheres on Bushneil-Haas (BH) medium supplemented with oil as the sole carbon source and tested for plant growth promotion. Of this strains, 60% potentially fixed nitrogen, 16% showed antimicrobial activity, 84% produced siderophores, 51% had the capacity to solubilize phosphate, and 33% produced the indole acetic acid hormone. Using gas chromatography, we evaluated the oil-degrading potential of ten selected strains that had different morphologies and showed Plant Growth Promoting Rhizobacteria (PGPR) features. The ten tested strains showed a promising degradation profile for at least one compound present in the oil. Among degrader strains, 46% had promising PGPR potential, having at least three of the above capacities. These strains might be used as a consortium, allowing the concomitant degradation of oil and stimulation of mangrove plant survival and maintenance. PMID:21887634

  2. ENZYMATIC PROCESSES USED BY PLANTS TO DEGRADE ORGANIC COMPOUNDS

    EPA Science Inventory

    This is a review of recent plant enzyme systems that have been studied in uptake and transformation of organic contaminants. General procedures of plant preparation and enzyme isolation are covered. Six plant enzyme systems have been investigated for activity with selected pollut...

  3. Adsorption, degradation, and plant availability of 2,4-dinitrophenol in sludge-amended calcareous soils

    SciTech Connect

    O'Connor, G.A.; Lujan, J.R.; Jin, Y.

    1990-01-01

    2,4-Dinitrophenol (DNP) is a moderately weak acid that is expected to be highly labile (leachable and plant available) in high-pH soils. The adsorption and degradation behavior of DNP in two sludge-amended, calcareous soils was determined and used to explain DNP uptake by plants grown in the soils in the greenhouse. The DNP adsorption was minor in both soils and was only slightly affected by sludge. The DNP degradation was rapid in both soils and was unaffected by sludge. Thus, despite limited soil adsorption, plant uptake of DNP was minor in all crops and plant parts owing to rapid soil DNP degradation. Even if a municipal sludge highly contaminated with DNP was identified (an unlikely occurrence), concerns over possible plant contamination should not limit sludge applications to calcareous soils or leaching of DNP to groundwater, given careful water management.

  4. Understanding How the Complex Molecular Architecture of Mannan-degrading Hydrolases Contributes to Plant Cell Wall Degradation*

    PubMed Central

    Zhang, Xiaoyang; Rogowski, Artur; Zhao, Lei; Hahn, Michael G.; Avci, Utku; Knox, J. Paul; Gilbert, Harry J.

    2014-01-01

    Microbial degradation of plant cell walls is a central component of the carbon cycle and is of increasing importance in environmentally significant industries. Plant cell wall-degrading enzymes have a complex molecular architecture consisting of catalytic modules and, frequently, multiple non-catalytic carbohydrate binding modules (CBMs). It is currently unclear whether the specificities of the CBMs or the topology of the catalytic modules are the primary drivers for the specificity of these enzymes against plant cell walls. Here, we have evaluated the relationship between CBM specificity and their capacity to enhance the activity of GH5 and GH26 mannanases and CE2 esterases against intact plant cell walls. The data show that cellulose and mannan binding CBMs have the greatest impact on the removal of mannan from tobacco and Physcomitrella cell walls, respectively. Although the action of the GH5 mannanase was independent of the context of mannan in tobacco cell walls, a significant proportion of the polysaccharide was inaccessible to the GH26 enzyme. The recalcitrant mannan, however, was fully accessible to the GH26 mannanase appended to a cellulose binding CBM. Although CE2 esterases display similar specificities against acetylated substrates in vitro, only CjCE2C was active against acetylated mannan in Physcomitrella. Appending a mannan binding CBM27 to CjCE2C potentiated its activity against Physcomitrella walls, whereas a xylan binding CBM reduced the capacity of esterases to deacetylate xylan in tobacco walls. This work provides insight into the biological significance for the complex array of hydrolytic enzymes expressed by plant cell wall-degrading microorganisms. PMID:24297170

  5. Soil degradation and amendment effects on soil properties, microbial communities, and plant growth

    NASA Astrophysics Data System (ADS)

    Gebhardt, M.; Fehmi, J. S.; Rasmussen, C.; Gallery, R. E.

    2015-12-01

    Human activities that disrupt soil properties are fundamentally changing ecosystems. Soil degradation, caused by anthropogenic disturbance can decrease microbial abundance and activity, leading to changes in nutrient availability, soil organic matter, and plant establishment. The addition of amendments to disturbed soils have the potential ameliorate these negative consequences. We studied the effects of soil degradation, via an autoclave heat shock method, and the addition of amendments (biochar and woodchips) on microbial activity, soil carbon and nitrogen availability, microbial biomass carbon and nitrogen content, and plant growth of ten plant species native to the semi-arid southwestern US. Relative to non-degraded soils, microbial activity, measured via extracellular enzyme assays, was significantly lower for all seven substrates assayed. These soils also had significantly lower amounts of carbon assimilated into microbial biomass but no change in microbial biomass nitrogen. Soil degradation had no effect on plant biomass. Amendments caused changes in microbial activity: biochar-amended soils had significant increases in potential activity with five of the seven substrates measured; woodchip amended soils had significant increases with two. Soil carbon increased with both amendments but this was not reflected in a significant change in microbial biomass carbon. Biochar-amended soils had increases in soil nitrogen availability but neither amendment caused changes in microbial biomass nitrogen. Biochar amendments had no significant effect on above- or belowground plant biomass while woodchips significantly decreased aboveground plant biomass. Results show that soil degradation decreases microbial activity and changes nutrient dynamics, but these are not reflected in changes in plant growth. Amendments provide nutrient sources and change soil pore space, which cause microbial activities to fluctuate and may, in the case of woodchips, increase plant drought

  6. ADSORPTION, DEGRADATION, AND PLANT AVAILABILITY OF 2,4-DINITROPHENOL IN SLUDGE-AMENDED CALCAREOUS SOILS

    EPA Science Inventory

    Dinitrophenol (DNP) is a moderately weak acid that is expected to be highly labile (leachable and plant available) in high-pH soils. The adsorption and degradation behavior of DNP in two sludge-amended, calcareous soils was determined and used to explain DNP uptake by plants grow...

  7. Degradation of a peptide in pitcher fluid of the carnivorous plant Nepenthes alata Blanco.

    PubMed

    An, Chung-Il; Takekawa, Shoji; Okazawa, Atsushi; Fukusaki, Ei-Ichiro; Kobayashi, Akio

    2002-07-01

    Carnivorous plants acquire substantial amounts of nitrogen from insects. The tropical carnivorous plant Nepenthes produces trapping organs called pitchers at the tips of tendrils elongated from leaf ends. Acidic fluid is secreted at the bottoms of the pitchers. The pitcher fluid includes several hydrolytic enzymes, and some, such as aspartic proteinase, are thought to be involved in nitrogen acquisition from insect proteins. To understand the nitrogen-acquisition process, it is essential to identify the protein-degradation products in the pitcher fluid. To gain insight into protein degradation in pitcher fluid, we used the oxidized B-chain of bovine insulin as a model substrate, and its degradation by the pitcher fluid of N. alata was investigated using liquid chromatography-mass spectrometry (LC-MS). LC-MS analysis of the degradation products revealed that the oxidized B-chain of bovine insulin was initially cleaved at aromatic amino acids such as phenylalanine and tyrosine. These cleavage sites are similar to those of aspartic proteinases from other plants and animals. The presence of a series of peptide fragments as degradation products suggests that exopeptidase(s) is also present in the pitcher fluid. Amino acid analysis and peptide fragment analysis of the degradation products demonstrated that three amino acids plus small peptides were released from the oxidized B-chain of bovine insulin, suggesting that insect proteins are readily degraded to small peptides and amino acids in the pitcher fluid of N. alata. PMID:12111230

  8. Uncovering the abilities of Agaricus bisporus to degrade plant biomass throughout its life cycle.

    PubMed

    Patyshakuliyeva, Aleksandrina; Post, Harm; Zhou, Miaomiao; Jurak, Edita; Heck, Albert J R; Hildén, Kristiina S; Kabel, Mirjam A; Mäkelä, Miia R; Altelaar, Maarten A F; de Vries, Ronald P

    2015-08-01

    The economically important edible basidiomycete mushroom Agaricus bisporus thrives on decaying plant material in forests and grasslands of North America and Europe. It degrades forest litter and contributes to global carbon recycling, depolymerizing (hemi-)cellulose and lignin in plant biomass. Relatively little is known about how A. bisporus grows in the controlled environment in commercial production facilities and utilizes its substrate. Using transcriptomics and proteomics, we showed that changes in plant biomass degradation by A. bisporus occur throughout its life cycle. Ligninolytic genes were only highly expressed during the spawning stage day 16. In contrast, (hemi-)cellulolytic genes were highly expressed at the first flush, whereas low expression was observed at the second flush. The essential role for many highly expressed plant biomass degrading genes was supported by exo-proteome analysis. Our data also support a model of sequential lignocellulose degradation by wood-decaying fungi proposed in previous studies, concluding that lignin is degraded at the initial stage of growth in compost and is not modified after the spawning stage. The observed differences in gene expression involved in (hemi-)cellulose degradation between the first and second flushes could partially explain the reduction in the number of mushrooms during the second flush. PMID:26118398

  9. Woody Plant Encroachment Paradox: Rivers Rebound as Degraded Grasslands Convert to Woodlands

    NASA Astrophysics Data System (ADS)

    Wilcox, B. P.; Huang, Y.

    2009-12-01

    The related phenomena of degradation and woody plant encroachment have transformed huge tracts of semiarid and subhumid rangelands. This transformation may have enormous consequences for regional water supplies, but to date few assessments have been done at scales larger than that of small catchments. Woody plant encroachment in particular is assumed to reduce groundwater recharge and, hence, baseflow to streams. For the study reported on in this paper, we analyzed the long-term (85 years) streamflow trends of four major river basins in the Edwards Plateau region of Central Texas. This region, in which springs are abundant because of the karst geology, has undergone both degradation and woody plant encroachment. We found that, contrary to common and widespread perceptions, streamflows have not been declining. In fact, the contribution of baseflow (supplied by springs and groundwater) has doubled—even though woody plant cover has expanded and rainfall amounts have remained relatively constant. We attribute this increase in springflow to a general landscape recovery that has taken place concurrent with woody plant expansion—a recovery brought about by lower grazing pressure and improved land management. Our results indicate that for drylands where the geology supports springs, it is degradation and not woody plant encroachment that leads to regional-scale declines in groundwater recharge and baseflows. Further, our results indicate that when woody plant expansion follows on the heels of degradation, it may even help reverse these declines.

  10. Site-specific proteolytic degradation of IgG monoclonal antibodies expressed in tobacco plants.

    PubMed

    Hehle, Verena K; Lombardi, Raffaele; van Dolleweerd, Craig J; Paul, Mathew J; Di Micco, Patrizio; Morea, Veronica; Benvenuto, Eugenio; Donini, Marcello; Ma, Julian K-C

    2015-02-01

    Plants are promising hosts for the production of monoclonal antibodies (mAbs). However, proteolytic degradation of antibodies produced both in stable transgenic plants and using transient expression systems is still a major issue for efficient high-yield recombinant protein accumulation. In this work, we have performed a detailed study of the degradation profiles of two human IgG1 mAbs produced in plants: an anti-HIV mAb 2G12 and a tumour-targeting mAb H10. Even though they use different light chains (κ and λ, respectively), the fragmentation pattern of both antibodies was similar. The majority of Ig fragments result from proteolytic degradation, but there are only a limited number of plant proteolytic cleavage events in the immunoglobulin light and heavy chains. All of the cleavage sites identified were in the proximity of interdomain regions and occurred at each interdomain site, with the exception of the VL /CL interface in mAb H10 λ light chain. Cleavage site sequences were analysed, and residue patterns characteristic of proteolytic enzymes substrates were identified. The results of this work help to define common degradation events in plant-produced mAbs and raise the possibility of predicting antibody degradation patterns 'a priori' and designing novel stabilization strategies by site-specific mutagenesis. PMID:25283551

  11. De novo prediction of the genomic components and capabilities for microbial plant biomass degradation from (meta-)genomes

    PubMed Central

    2013-01-01

    Background Understanding the biological mechanisms used by microorganisms for plant biomass degradation is of considerable biotechnological interest. Despite of the growing number of sequenced (meta)genomes of plant biomass-degrading microbes, there is currently no technique for the systematic determination of the genomic components of this process from these data. Results We describe a computational method for the discovery of the protein domains and CAZy families involved in microbial plant biomass degradation. Our method furthermore accurately predicts the capability to degrade plant biomass for microbial species from their genome sequences. Application to a large, manually curated data set of microbial degraders and non-degraders identified gene families of enzymes known by physiological and biochemical tests to be implicated in cellulose degradation, such as GH5 and GH6. Additionally, genes of enzymes that degrade other plant polysaccharides, such as hemicellulose, pectins and oligosaccharides, were found, as well as gene families which have not previously been related to the process. For draft genomes reconstructed from a cow rumen metagenome our method predicted Bacteroidetes-affiliated species and a relative to a known plant biomass degrader to be plant biomass degraders. This was supported by the presence of genes encoding enzymatically active glycoside hydrolases in these genomes. Conclusions Our results show the potential of the method for generating novel insights into microbial plant biomass degradation from (meta-)genome data, where there is an increasing production of genome assemblages for uncultured microbes. PMID:23414703

  12. Abundance and diversity of soil petroleum hydrocarbon-degrading microbial communities in oil exploring areas.

    PubMed

    Yang, Yuyin; Wang, Jie; Liao, Jingqiu; Xie, Shuguang; Huang, Yi

    2015-02-01

    Alkanes and polycyclic aromatic hydrocarbons (PAHs) are the commonly detected petroleum hydrocarbon contaminants in soils in oil exploring areas. Hydrocarbon-degrading genes are useful biomarks for estimation of the bioremediation potential of contaminated sites. However, the links between environmental factors and the distribution of alkane and PAH metabolic genes still remain largely unclear. The present study investigated the abundances and diversities of soil n-alkane and PAH-degrading bacterial communities targeting both alkB and nah genes in two oil exploring areas at different geographic regions. A large variation in the abundances and diversities of alkB and nah genes occurred in the studied soil samples. Various environmental variables regulated the spatial distribution of soil alkane and PAH metabolic genes, dependent on geographic location. The soil alkane-degrading bacterial communities in oil exploring areas mainly consisted of Pedobacter, Mycobacterium, and unknown alkB-harboring microorganisms. Moreover, the novel PAH-degraders predominated in nah gene clone libraries from soils of the two oil exploring areas. This work could provide some new insights towards the distribution of hydrocarbon-degrading microorganisms and their biodegradation potential in soil ecosystems. PMID:25236802

  13. The History and Future of NDE in the Management of Nuclear Power Plant Materials Degradation

    SciTech Connect

    Doctor, Steven R.

    2009-04-01

    The author has spent more than 25 years conducting engineering and research studies to quantify the performance of nondestructive evaluation (NDE) in nuclear power plant (NPP) applications and identifying improvements to codes and standards for NDE to manage materials degradation. This paper will review this fundamental NDE engineering/research work and then look to the future on how NDE can be optimized for proactively managing materials degradation in NPP components.

  14. Degradation of phenanthrene and pyrene in spiked soils by single and combined plants cultivation.

    PubMed

    Cheema, Sardar Alam; Imran Khan, Muhammad; Shen, Chaofeng; Tang, Xianjin; Farooq, Muhammad; Chen, Lei; Zhang, Congkai; Chen, Yingxu

    2010-05-15

    The present study was conducted to investigate the capability of four plant species (tall fescue, ryegrass, alfalfa, and rape seed) grown alone and in combination to the degradation of phenanthrene and pyrene (polycyclic aromatic hydrocarbons, PAHs) in spiked soil. After 65 days of plant growth, plant biomass, dehydrogenase activity, water-soluble phenolic (WSP) compounds, plant uptake and accumulation and residual concentrations of phenanthrene and pyrene were determined. Our results showed that presence of vegetation significantly enhanced the dissipation of phenanthrene and pyrene from contaminated soils. Higher degradation rates of PAHs were observed in the combined plant cultivation (98.3-99.2% phenanthrene and 88.1-95.7% pyrene) compared to the single plant cultivation (97.0-98.0% phenanthrene and 79.8-86.0% pyrene). Contribution of direct plant uptake and accumulation of phenanthrene and pyrene was very low compared to the plant enhanced dissipation. By contrast, plant-promoted biodegradation was the predominant contribution to the remediation enhancement. The correlation analysis indicates a negative relation between biological activities (dehydrogenase activity and WSP compounds) and residual concentrations of phenanthrene and pyrene in planted soils. Our results suggest that phytoremediation could be a feasible choice for PAHs contaminated soil. Moreover, the combined plant cultivation has potential to enhance the process. PMID:20079966

  15. Degradation efficiency of agricultural biogas plants--a full-scale study.

    PubMed

    Ruile, Stephan; Schmitz, Sabine; Mönch-Tegeder, Matthias; Oechsner, Hans

    2015-02-01

    The degradation efficiency of 21 full-scale agricultural CSTR biogas plants was investigated. The residual methane potential of the digestion stages was determined in batch digestion tests (20.0 and 37.0 °C). The results of this study showed that the residual methane yield is significantly correlated to the HRT (r=-0.73). An almost complete degradation of the input substrates was achieved due to a HRT of more than 100 days (0.097±0.017 Nm(3)/kg VS). The feedstock characteristics have the largest impact to the degradation time. It was found that standard values of the methane yield are a helpful tool for evaluating the degradation efficiency. Adapting the HRT to the input materials is the key factor for an efficient degradation in biogas plants. No influence of digester series configuration to the VS degradation was found. The mean VS degradation rate in the total reactor systems was 78±7%. PMID:25453437

  16. Argan woodlands in South Morocco as an area of conflict between degradation and sustainable land use

    NASA Astrophysics Data System (ADS)

    Kirchhoff, Mario; Kagermeier, Andreas; Ries, Johannes B.

    2016-04-01

    The Argan woodlands are endemic for South Morocco and prone to degradation through expanding and intensifying agriculture and overgrazing. Unvegetated areas extend further due to degradation of soil and vegetation. Here infiltration is less than on vegetated areas, while runoff and soil erosion increase. The sale of the highly valuable oil, gained from the seeds of the argan tree, can be seen as an economic alternative for the region and a chance of survival for the argan woodlands. With the introduction of women's cooperatives for the production and sale of the oil, the Gesellschaft für Technische Zusammenarbeit (GTZ, Association for Technical Cooperation) hoped to halt argan degradation from 1995 to 2002. The effects of this approach shall be studied in a proposed DFG-project. The erosion gradient between soils under canopy cover and intertree areas in varying stages of degradation will be at the center of the analysis. Insight into onsite and offsite degradation shall be gained through the measurement of runoff and erosion rates, which lead to rill and gully erosion downslope. Measurements of soil chemical and physical properties might also help indicate when an argan woodland can be classified as natural. Furthermore to be studied are the effects of the new found value of the Argan woodlands among the local population with focus on regional tourism and a possible reduction of grazing pressure. Sustainable soil management in combination with the needs of the local population is essential for a sustainable land use in the region.

  17. An Insect Herbivore Microbiome with High Plant Biomass-Degrading Capacity

    SciTech Connect

    Suen, Garret; Barry, Kerrie; Goodwin, Lynne; Scott, Jarrod; Aylward, Frank; Adams, Sandra; Pinto-Tomas, Adrian; Foster, Clifton; Pauly, Markus; Weimer, Paul; Bouffard, Pascal; Li, Lewyn; Osterberger, Jolene; Harkins, Timothy; Slater, Steven; Donohue, Timothy; Currie, Cameron; Tringe, Susannah G.

    2010-09-23

    Herbivores can gain indirect access to recalcitrant carbon present in plant cell walls through symbiotic associations with lignocellulolytic microbes. A paradigmatic example is the leaf-cutter ant (Tribe: Attini), which uses fresh leaves to cultivate a fungus for food in specialized gardens. Using a combination of sugar composition analyses, metagenomics, and whole-genome sequencing, we reveal that the fungus garden microbiome of leaf-cutter ants is composed of a diverse community of bacteria with high plant biomass-degrading capacity. Comparison of this microbiome?s predicted carbohydrate-degrading enzyme profile with other metagenomes shows closest similarity to the bovine rumen, indicating evolutionary convergence of plant biomass degrading potential between two important herbivorous animals. Genomic and physiological characterization of two dominant bacteria in the fungus garden microbiome provides evidence of their capacity to degrade cellulose. Given the recent interest in cellulosic biofuels, understanding how large-scale and rapid plant biomass degradation occurs in a highly evolved insect herbivore is of particular relevance for bioenergy.

  18. An Insect Herbivore Microbiome with High Plant Biomass-Degrading Capacity

    PubMed Central

    Suen, Garret; Scott, Jarrod J.; Aylward, Frank O.; Adams, Sandra M.; Tringe, Susannah G.; Pinto-Tomás, Adrián A.; Foster, Clifton E.; Pauly, Markus; Weimer, Paul J.; Barry, Kerrie W.; Goodwin, Lynne A.; Bouffard, Pascal; Li, Lewyn; Osterberger, Jolene; Harkins, Timothy T.; Slater, Steven C.; Donohue, Timothy J.; Currie, Cameron R.

    2010-01-01

    Herbivores can gain indirect access to recalcitrant carbon present in plant cell walls through symbiotic associations with lignocellulolytic microbes. A paradigmatic example is the leaf-cutter ant (Tribe: Attini), which uses fresh leaves to cultivate a fungus for food in specialized gardens. Using a combination of sugar composition analyses, metagenomics, and whole-genome sequencing, we reveal that the fungus garden microbiome of leaf-cutter ants is composed of a diverse community of bacteria with high plant biomass-degrading capacity. Comparison of this microbiome's predicted carbohydrate-degrading enzyme profile with other metagenomes shows closest similarity to the bovine rumen, indicating evolutionary convergence of plant biomass degrading potential between two important herbivorous animals. Genomic and physiological characterization of two dominant bacteria in the fungus garden microbiome provides evidence of their capacity to degrade cellulose. Given the recent interest in cellulosic biofuels, understanding how large-scale and rapid plant biomass degradation occurs in a highly evolved insect herbivore is of particular relevance for bioenergy. PMID:20885794

  19. An insect herbivore microbiome with high plant biomass-degrading capacity.

    PubMed

    Suen, Garret; Scott, Jarrod J; Aylward, Frank O; Adams, Sandra M; Tringe, Susannah G; Pinto-Tomás, Adrián A; Foster, Clifton E; Pauly, Markus; Weimer, Paul J; Barry, Kerrie W; Goodwin, Lynne A; Bouffard, Pascal; Li, Lewyn; Osterberger, Jolene; Harkins, Timothy T; Slater, Steven C; Donohue, Timothy J; Currie, Cameron R

    2010-09-01

    Herbivores can gain indirect access to recalcitrant carbon present in plant cell walls through symbiotic associations with lignocellulolytic microbes. A paradigmatic example is the leaf-cutter ant (Tribe: Attini), which uses fresh leaves to cultivate a fungus for food in specialized gardens. Using a combination of sugar composition analyses, metagenomics, and whole-genome sequencing, we reveal that the fungus garden microbiome of leaf-cutter ants is composed of a diverse community of bacteria with high plant biomass-degrading capacity. Comparison of this microbiome's predicted carbohydrate-degrading enzyme profile with other metagenomes shows closest similarity to the bovine rumen, indicating evolutionary convergence of plant biomass degrading potential between two important herbivorous animals. Genomic and physiological characterization of two dominant bacteria in the fungus garden microbiome provides evidence of their capacity to degrade cellulose. Given the recent interest in cellulosic biofuels, understanding how large-scale and rapid plant biomass degradation occurs in a highly evolved insect herbivore is of particular relevance for bioenergy. PMID:20885794

  20. A Procedure for Determination of Degradation Acceptance Criteria for Structures and Passive Components in Nuclear Power Plants

    SciTech Connect

    Nie, J.; Braverman, J.; Hofmayer, C.; Choun, Y-S.; Hahm, D.; Choi, I-K.

    2012-01-30

    The Korea Atomic Energy Research Institute (KAERI) has been collaborating with Brookhaven National Laboratory since 2007 to develop a realistic seismic risk evaluation system which includes the consideration of aging of structures and components in nuclear power plants (NPPs). This collaboration program aims at providing technical support to a five-year KAERI research project, which includes three specific areas that are essential to seismic probabilistic risk assessment: (1) probabilistic seismic hazard analysis, (2) seismic fragility analysis including the effects of aging, and (3) a plant seismic risk analysis. The understanding and assessment of age-related degradations of structures, systems, and components and their impact on plant safety is the major goal of this KAERI-BNL collaboration. Four annual reports have been published before this report as a result of the collaboration research.

  1. Monitoring of Land degradation in the mining impacted areas of Mongolia

    NASA Astrophysics Data System (ADS)

    Amar, T.; Renchin, T.

    2012-12-01

    Nowadays, environmental issue is very important and complicated problem in Mongolia. Mongolia has long suffered from poor mining legislation and almost no regulation of its production . There is a need to undertake analyses of land degradation and land use in Mongolia as an important factor of Environment. Land degradation has been identified as one the priority concerns. Causes of land degradation can be divided into two categories natural and human induced in Mongolia. The second hand level mining contributes to land degradation increased small to large-scale mining, as well as illicit activity resulting in exploitation of the country's mineral resources. In the last decade Mongolia has been developing the mining sector and due to the great number of exploitations the related territories were ecologically damaged. The rivers and lakes are drained, the earth is defiled and all these damages brought the environmental problems. This study aims to monitor land degradation processes in the study area Ongi River Basin of the central region of Mongolia. This area is affected by mining activities and desertification processes. The main reason of drying up Ongiriver and Ulaannuur is definitely changed the Onggi riverbed due to the mining of gold placer deposit and never making technical and biological reclamation. About 60 thousand people and over one million livestock who one living around Onggi river one getting defective of drink water and pasture because of Onggi river and UlaanLake's evaporation. We applied change detection technique and supervised classification using Satellite data. This study contributes to the research which involves policy makers and stakeholders to define and negotiate relevant scenarios in participatory approaches in the local area and to the studies about linking people to pixels. This case study will enable our researchers to plan for the future by making more educated decisions in issues stemming from mining, land degradation, water

  2. Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

    PubMed Central

    2013-01-01

    Background Fungi produce a variety of carbohydrate activity enzymes (CAZymes) for the degradation of plant polysaccharide materials to facilitate infection and/or gain nutrition. Identifying and comparing CAZymes from fungi with different nutritional modes or infection mechanisms may provide information for better understanding of their life styles and infection models. To date, over hundreds of fungal genomes are publicly available. However, a systematic comparative analysis of fungal CAZymes across the entire fungal kingdom has not been reported. Results In this study, we systemically identified glycoside hydrolases (GHs), polysaccharide lyases (PLs), carbohydrate esterases (CEs), and glycosyltransferases (GTs) as well as carbohydrate-binding modules (CBMs) in the predicted proteomes of 103 representative fungi from Ascomycota, Basidiomycota, Chytridiomycota, and Zygomycota. Comparative analysis of these CAZymes that play major roles in plant polysaccharide degradation revealed that fungi exhibit tremendous diversity in the number and variety of CAZymes. Among them, some families of GHs and CEs are the most prevalent CAZymes that are distributed in all of the fungi analyzed. Importantly, cellulases of some GH families are present in fungi that are not known to have cellulose-degrading ability. In addition, our results also showed that in general, plant pathogenic fungi have the highest number of CAZymes. Biotrophic fungi tend to have fewer CAZymes than necrotrophic and hemibiotrophic fungi. Pathogens of dicots often contain more pectinases than fungi infecting monocots. Interestingly, besides yeasts, many saprophytic fungi that are highly active in degrading plant biomass contain fewer CAZymes than plant pathogenic fungi. Furthermore, analysis of the gene expression profile of the wheat scab fungus Fusarium graminearum revealed that most of the CAZyme genes related to cell wall degradation were up-regulated during plant infection. Phylogenetic analysis also

  3. Protected-Area Boundaries as Filters of Plant Invasions

    PubMed Central

    Foxcroft, Llewellyn C; JaroŠÍK, Vojtěch; Pyšek, Petr; Richardson, David M; Rouget, Mathieu

    2011-01-01

    Abstract Human land uses surrounding protected areas provide propagules for colonization of these areas by non-native species, and corridors between protected-area networks and drainage systems of rivers provide pathways for long-distance dispersal of non-native species. Nevertheless, the influence of protected-area boundaries on colonization of protected areas by invasive non-native species is unknown. We drew on a spatially explicit data set of more than 27,000 non-native plant presence records for South Africa's Kruger National Park to examine the role of boundaries in preventing colonization of protected areas by non-native species. The number of records of non-native invasive plants declined rapidly beyond 1500 m inside the park; thus, we believe that the park boundary limited the spread of non-native plants. The number of non-native invasive plants inside the park was a function of the amount of water runoff, density of major roads, and the presence of natural vegetation outside the park. Of the types of human-induced disturbance, only the density of major roads outside the protected area significantly increased the number of non-native plant records. Our findings suggest that the probability of incursion of invasive plants into protected areas can be quantified reliably. PMID:21166715

  4. Red List of vascular plants of the Wadden Sea Area

    NASA Astrophysics Data System (ADS)

    Wind, P.; van der Ende, M.; Garve, E.; Schacherer, A.; Thissen, J. B. M.

    1996-10-01

    In the Wadden Sea area, a total of 248 (sub)species of vascular plants are threatened in at least one subregion. Of these, 216 (sub)species are threatened in the entire area and are therefore placed on the trialteral Red List. 17 (sub)species of the listed vascular plants are (probably) extinct in the entire Wadden Sea area. The status of 47 (sub)species of vascular plants is (probably) critical; 61 (sub)species are (probably) endangered; the status of 65 (sub)species is (probably) vulnerable and that of 26 (sub)species susceptible.

  5. ANTHROPOGENIC NUTRIENT INPUT AND ITS INFLUENCE ON PLANT COMPETITIVE OUTCOMES: IMPLICATIONS FOR HABITAT DEGRADATION AND COMMUNITY SHIFTS

    EPA Science Inventory

    By taking a multifactorial approach, the study will document complex aquatic plant responses to NPS nutrient contamination, providing fundamental insight into the broader impacts of environmental degradation, its impacts on plant function, and implications for ecosystem ser...

  6. Safety analysis, 200 Area, Savannah River Plant: Separations area operations

    SciTech Connect

    Perkins, W.C.; Lee, R.; Allen, P.M.; Gouge, A.P.

    1991-07-01

    The nev HB-Line, located on the fifth and sixth levels of Building 221-H, is designed to replace the aging existing HB-Line production facility. The nev HB-Line consists of three separate facilities: the Scrap Recovery Facility, the Neptunium Oxide Facility, and the Plutonium Oxide Facility. There are three separate safety analyses for the nev HB-Line, one for each of the three facilities. These are issued as supplements to the 200-Area Safety Analysis (DPSTSA-200-10). These supplements are numbered as Sup 2A, Scrap Recovery Facility, Sup 2B, Neptunium Oxide Facility, Sup 2C, Plutonium Oxide Facility. The subject of this safety analysis, the, Plutonium Oxide Facility, will convert nitrate solutions of {sup 238}Pu to plutonium oxide (PuO{sub 2}) powder. All these new facilities incorporate improvements in: (1) engineered barriers to contain contamination, (2) barriers to minimize personnel exposure to airborne contamination, (3) shielding and remote operations to decrease radiation exposure, and (4) equipment and ventilation design to provide flexibility and improved process performance.

  7. Identification and Assessment of Material Models for Age-Related Degradation of Structures and Passive Components in Nuclear Power Plants

    SciTech Connect

    Nie,J.; Braverman, J.; Hofmayer, C.; Kim, M. K.; Choi, I-K.

    2009-04-27

    When performing seismic safety assessments of nuclear power plants (NPPs), the potential effects of age-related degradation on structures, systems, and components (SSCs) should be considered. To address the issue of aging degradation, the Korea Atomic Energy Research Institute (KAERI) has embarked on a five-year research project to develop a realistic seismic risk evaluation system which will include the consideration of aging of structures and components in NPPs. Three specific areas that are included in the KAERI research project, related to seismic probabilistic risk assessment (PRA), are probabilistic seismic hazard analysis, seismic fragility analysis including the effects of aging, and a plant seismic risk analysis. To support the development of seismic capability evaluation technology for degraded structures and components, KAERI entered into a collaboration agreement with Brookhaven National Laboratory (BNL) in 2007. The collaborative research effort is intended to continue over a five year period with the goal of developing seismic fragility analysis methods that consider the potential effects of age-related degradation of SSCs, and using these results as input to seismic PRAs. In the Year 1 scope of work BNL collected and reviewed degradation occurrences in US NPPs and identified important aging characteristics needed for the seismic capability evaluations that will be performed in the subsequent evaluations in the years that follow. This information is presented in the Annual Report for the Year 1 Task, identified as BNL Report-81741-2008 and also designated as KAERI/RR-2931/2008. The report presents results of the statistical and trending analysis of this data and compares the results to prior aging studies. In addition, the report provides a description of U.S. current regulatory requirements, regulatory guidance documents, generic communications, industry standards and guidance, and past research related to aging degradation of SSCs. This report

  8. Degradation kinetics and pathways of spirotetramat in different parts of spinach plant and in the soil.

    PubMed

    Chen, Xiaojun; Meng, Zhiyuan; Zhang, Yanyan; Gu, Haotian; Ren, Yajun; Lu, Chunliang

    2016-08-01

    Spirotetramat is a new pesticide against a broad spectrum of sucking insects and exhibits a unique property with a two-way systemicity. In order to formulate a scientific rationale for a reasonable spray dose and the safe interval period of 22.4 % spirotetramat suspension concentrate on controlling vegetable pests, we analyzed degradation dynamics and pathways of spirotetramat in different parts of spinach plant (leaf, stalk, and root) and in the soil. We conducted experimental trials under field conditions and adopted a simple and reliable method (dispersive solid phase extraction) combined with liquid chromatography-triple quadrupole tandem mass spectrometry to evaluate the dissipation rates of spirotetramat residue and its metabolites. The results showed that the spirotetramat was degraded into different metabolite residues in different parts of spinach plant (leaf, stalk, and root) and in the soil. Specifically, spirotetramat was degraded into B-keto, B-glu, and B-enol in the leaf; B-glu and B-enol in the stalk; and only B-enol in the root. In the soil where the plants grew, spirotetramat followed a completely different pathway compared to the plant and degraded into B-keto and B-mono. Regardless of different degradation pathways, the dissipation dynamic equations of spirotetramat in different parts of spinach plant and in the soil were all based on the first-order reaction dynamic equations. This work provides guidelines for the safe use of spirotetramat in spinach fields, which would help prevent potential health threats to consumers. PMID:27083908

  9. Failure Prevention For Nuclear Power Plants Through Proactive Management of Materials Degradation (PMMD)

    SciTech Connect

    Bond, Leonard J.; Doctor, Steven R.; Bruemmer, Stephen M.; Cumblidge, Stephen E.; Hull, Amy; Malik, Shah

    2009-05-01

    Failure prevention is central to the operation of nuclear power plants. To meet this goal there is growing interest in new and improved philosophies and methodologies for plant life management (PLiM), which include the migration from reliance on periodic inservice inspection to include condition-based maintenance. A further step in the development of plant management is the move from reactive responses based on ISI to become proactive, through the investigation of the potential for implementation of a proactive management of materials degradation (PMMD) program and its potential impact on the management of LWRs.

  10. The invasive plant, Brassica nigra, degrades local mycorrhizas across a wide geographical landscape

    PubMed Central

    Pakpour, Sepideh; Klironomos, John

    2015-01-01

    Disruption of mycorrhizal fungi that form symbioses with local native plants is a strategy used by some invasive exotic plants for competing within their resident communities. Example invasive plants include Alliaria petiolata (garlic mustard) and Brassica nigra (black mustard), both non-mycorrhizal plants in the Family Brassicaceae. Although there is clear evidence for mycorrhizal degradation, it is not known if such an effect is widespread across the naturalized range. In this study, we tested the ability of black mustard to degrade the local mycorrhizal symbiosis and supress the growth of native flora from across a variety of locations where black mustard has invaded. We found that the effects on mycorrhizal fungi and on the growth of native plants were consistently negative at the various sites. The present results indicate that degradation of the mycorrhizal symbiosis by black mustard is of general significance, and may be highly problematic considering the large range that it has occupied in open fields across North America. PMID:26473052

  11. The invasive plant, Brassica nigra, degrades local mycorrhizas across a wide geographical landscape.

    PubMed

    Pakpour, Sepideh; Klironomos, John

    2015-09-01

    Disruption of mycorrhizal fungi that form symbioses with local native plants is a strategy used by some invasive exotic plants for competing within their resident communities. Example invasive plants include Alliaria petiolata (garlic mustard) and Brassica nigra (black mustard), both non-mycorrhizal plants in the Family Brassicaceae. Although there is clear evidence for mycorrhizal degradation, it is not known if such an effect is widespread across the naturalized range. In this study, we tested the ability of black mustard to degrade the local mycorrhizal symbiosis and supress the growth of native flora from across a variety of locations where black mustard has invaded. We found that the effects on mycorrhizal fungi and on the growth of native plants were consistently negative at the various sites. The present results indicate that degradation of the mycorrhizal symbiosis by black mustard is of general significance, and may be highly problematic considering the large range that it has occupied in open fields across North America. PMID:26473052

  12. Sustainable global energy supply based on lignocellulosic biomass from afforestation of degraded areas

    NASA Astrophysics Data System (ADS)

    Metzger, Jürgen O.; Hüttermann, Aloys

    2009-02-01

    An important aspect of present global energy scenarios is the assumption that the amount of biomass that can be grown on the available area is so limited that a scenario based on biomass as the major source of energy should be unrealistic. We have been investigating the question whether a Biomass Scenario may be realistic. We found that the global energy demand projected by the International Energy Agency in the Reference Scenario for the year 2030 could be provided sustainably and economically primarily from lignocellulosic biomass grown on areas which have been degraded by human activities in historical times. Moreover, other renewable energies will contribute to the energy mix. There would be no competition with increasing food demand for existing arable land. Afforestation of degraded areas and investment for energy and fuel usage of the biomass are not more expensive than investment in energy infrastructure necessary up to 2030 assumed in the fossil energy based Reference Scenario, probably much cheaper considering the additional advantages such as stopping the increase of and even slowly reducing the CO2 content of the atmosphere, soil, and water conservation and desertification control. Most importantly, investment for a Biomass Scenario would be actually sustainable, in contrast to investment in energy-supply infrastructure of the Reference Scenario. Methods of afforestation of degraded areas, cultivation, and energetic usage of lignocellulosic biomass are available but have to be further improved. Afforestation can be started immediately, has an impact in some few years, and may be realized in some decades.

  13. Isolation and characterization of phenol degrading yeasts from wastewater in the coking plant of Zarand, Kerman

    PubMed Central

    Karimi, Maryam; Hassanshahian, Mehdi

    2016-01-01

    Phenol and phenolic compounds are environmental pollutants present in industrial wastewaters such as coal tar, oil refineries and petrochemical plants. Phenol removal from industrial effluents is extremely important for the protection of environment. Usually, phenol degradation is carried out by physicochemical methods that are costly and produce hazardous metabolites. Recently, phenol biodegradation has been considered. Yeasts are the most important phenol biodegraders. In this study, the phenol-degrading yeast from environmental samples (soil and wastewater) was isolated from the coking plant of Zarand, Kerman. Then total heterotrophic yeasts were counted. The soil samples had higher rates of yeast degrader, in comparison to wastewater samples. After three passages, four yeasts (K1, K2, K7 and K11) that had the highest growth rate were selected for further study. Also, these yeasts were able to remove phenol measured by Gibbs reagent. The effect of four different concentrations of phenol (50, 125, 200 and 275) mg L−1 was measured and three degradation patterns in these yeasts were observed. The hydrophobicity and emulsification activity were measured in all eleven yeasts. Finally, strong yeasts in phenol degrading yeasts were identified by molecular method using amplification of 18S rRNA gene region. The sequencing results showed that these isolated yeasts belonged to Candida tropicalis strain K1, Pichia guilliermondii strain K2, Meyerozyma guilliermondii strain K7 and C. tropicalis strain K11. PMID:26887222

  14. Isolation and characterization of phenol degrading yeasts from wastewater in the coking plant of Zarand, Kerman.

    PubMed

    Karimi, Maryam; Hassanshahian, Mehdi

    2016-01-01

    Phenol and phenolic compounds are environmental pollutants present in industrial wastewaters such as coal tar, oil refineries and petrochemical plants. Phenol removal from industrial effluents is extremely important for the protection of environment. Usually, phenol degradation is carried out by physicochemical methods that are costly and produce hazardous metabolites. Recently, phenol biodegradation has been considered. Yeasts are the most important phenol biodegraders. In this study, the phenol-degrading yeast from environmental samples (soil and wastewater) was isolated from the coking plant of Zarand, Kerman. Then total heterotrophic yeasts were counted. The soil samples had higher rates of yeast degrader, in comparison to wastewater samples. After three passages, four yeasts (K1, K2, K7 and K11) that had the highest growth rate were selected for further study. Also, these yeasts were able to remove phenol measured by Gibbs reagent. The effect of four different concentrations of phenol (50, 125, 200 and 275) mgL(-1) was measured and three degradation patterns in these yeasts were observed. The hydrophobicity and emulsification activity were measured in all eleven yeasts. Finally, strong yeasts in phenol degrading yeasts were identified by molecular method using amplification of 18S rRNA gene region. The sequencing results showed that these isolated yeasts belonged to Candida tropicalis strain K1, Pichia guilliermondii strain K2, Meyerozyma guilliermondii strain K7 and C. tropicalis strain K11. PMID:26887222

  15. Traits of Heracleum sosnowskyi Plants in Monostand on Invaded Area.

    PubMed

    Dalke, Igor V; Chadin, Ivan F; Zakhozhiy, Ilya G; Malyshev, Ruslan V; Maslova, Svetlana P; Tabalenkova, Galina N; Golovko, Tamara K

    2015-01-01

    The ability of giant hogweeds to form monodominant communities and even pure monostands in invaded areas has been well documented. Understanding of the mechanisms leading to monostand formation can aid in determining the limitations of existing community ecology models and establishing an effective management plan for invasive species elimination. The aim of this observational study was to investigate traits of Heracleum sosnowskyi plants (demography, canopy structure, morphology and physiology) of the plants in a pure stand in an invaded area useful for understanding potential monostand formation mechanisms. All measurements were performed in one typical Heracleum sosnowskyi monostand located in an abandoned agriculture field located in Syktyvkar city suburb (North-east Russia). This monostand consisted of five main plant growth stages: seed, seedling, juvenile, vegetative adult, and generative adult. Plants of all stages began to grow simultaneously shortly after the snowmelt, at the same time as spring ephemeral plant species grew. The density of generative plants did not change during the vegetation period, but the density of the other plant stages rapidly decreased after the formation of a tall (up to 2-2.5 m) and dense (Leaf area index up to 6.5) canopy. The canopy captured approximately 97% of the light. H. sosnowskyi showed high (several orders of magnitude higher than average taiga zone grasses) photosynthetic water use efficiency (6-7 μM CO2/μM H2O). Formation of H. sosnowskyi monostands occurs primarily in disturbed areas with relatively rich and well-moistened soils. Early commencement of growth, rapid formation of a dense canopy, high efficiency of light and water use during photosynthesis, ability of young plants to survive in low light conditions, rapid recovery of above-ground plant parts after damage, and the high density of the soil seed bank are the most important traits of H. sosnowskyi plants for monostand formation in invaded areas. PMID

  16. Traits of Heracleum sosnowskyi Plants in Monostand on Invaded Area

    PubMed Central

    2015-01-01

    The ability of giant hogweeds to form monodominant communities and even pure monostands in invaded areas has been well documented. Understanding of the mechanisms leading to monostand formation can aid in determining the limitations of existing community ecology models and establishing an effective management plan for invasive species elimination. The aim of this observational study was to investigate traits of Heracleum sosnowskyi plants (demography, canopy structure, morphology and physiology) of the plants in a pure stand in an invaded area useful for understanding potential monostand formation mechanisms. All measurements were performed in one typical Heracleum sosnowskyi monostand located in an abandoned agriculture field located in Syktyvkar city suburb (North-east Russia). This monostand consisted of five main plant growth stages: seed, seedling, juvenile, vegetative adult, and generative adult. Plants of all stages began to grow simultaneously shortly after the snowmelt, at the same time as spring ephemeral plant species grew. The density of generative plants did not change during the vegetation period, but the density of the other plant stages rapidly decreased after the formation of a tall (up to 2–2.5 m) and dense (Leaf area index up to 6.5) canopy. The canopy captured approximately 97% of the light. H. sosnowskyi showed high (several orders of magnitude higher than average taiga zone grasses) photosynthetic water use efficiency (6–7 μM CO2/μM H2O). Formation of H. sosnowskyi monostands occurs primarily in disturbed areas with relatively rich and well-moistened soils. Early commencement of growth, rapid formation of a dense canopy, high efficiency of light and water use during photosynthesis, ability of young plants to survive in low light conditions, rapid recovery of above-ground plant parts after damage, and the high density of the soil seed bank are the most important traits of H. sosnowskyi plants for monostand formation in invaded areas. PMID

  17. Effectiveness of Protected Areas in Maintaining Plant Production

    PubMed Central

    Tang, Zhiyao; Fang, Jingyun; Sun, Jinyu; Gaston, Kevin J.

    2011-01-01

    Given the central importance of protected area systems in local, regional and global conservation strategies, it is vital that there is a good understanding of their effectiveness in maintaining ecological functioning. Here, we provide, to our knowledge, the first such global analysis, focusing on plant production, a “supporting” ecosystem function necessary for multiple other ecosystem services. We use data on the normalized difference vegetation index (NDVI) as a measure of variation in plant production in the core, boundary and surroundings of more than 1000 large protected areas over a 25 year period. Forested protected areas were higher (or similar), and those non-forested were lower (or similar), in NDVI than their surrounding areas, and these differences have been sustained. The differences from surrounding areas have increased for evergreen broadleaf forests and barren grounds, decreased for grasslands, and remained similar for deciduous forests, woodlands, and shrublands, reflecting different pressures on those surroundings. These results are consistent with protected areas being effective both in the representation and maintenance of plant production. However, widespread overall increases in NDVI during the study period suggest that plant production within the core of non-forested protected areas has become higher than it was in the surroundings of those areas in 1982, highlighting that whilst the distinctiveness of protected areas from their surroundings has persisted the nature of that difference has changed. PMID:21552560

  18. Degradation kinetics of chlorinated aliphatic hydrocarbons by methane oxidizers naturally-associated with wetland plant roots

    NASA Astrophysics Data System (ADS)

    Powell, C. L.; Goltz, M. N.; Agrawal, A.

    2014-12-01

    Chlorinated aliphatic hydrocarbons (CAHs) are common groundwater contaminants that can be removed from the environment by natural attenuation processes. CAH biodegradation can occur in wetland environments by reductive dechlorination as well as oxidation pathways. In particular, CAH oxidation may occur in vegetated wetlands, by microorganisms that are naturally associated with the roots of wetland plants. The main objective of this study was to evaluate the cometabolic degradation kinetics of the CAHs, cis-1,2-dichloroethene (cisDCE), trichloroethene (TCE), and 1,1,1-trichloroethane (1,1,1TCA), by methane-oxidizing bacteria associated with the roots of a typical wetland plant in soil-free system. Laboratory microcosms with washed live roots investigated aerobic, cometabolic degradation of CAHs by the root-associated methane-oxidizing bacteria at initial aqueous [CH4] ~ 1.9 mg L- 1, and initial aqueous [CAH] ~ 150 μg L- 1; cisDCE and TCE (in the presence of 1,1,1TCA) degraded significantly, with a removal efficiency of approximately 90% and 46%, respectively. 1,1,1TCA degradation was not observed in the presence of active methane oxidizers. The pseudo first-order degradation rate-constants of TCE and cisDCE were 0.12 ± 0.01 and 0.59 ± 0.07 d- 1, respectively, which are comparable to published values. However, their biomass-normalized degradation rate constants obtained in this study were significantly smaller than pure-culture studies, yet they were comparable to values reported for biofilm systems. The study suggests that CAH removal in wetland plant roots may be comparable to processes within biofilms. This has led us to speculate that the active biomass may be on the root surface as a biofilm. The cisDCE and TCE mass losses due to methane oxidizers in this study offer insight into the role of shallow, vegetated wetlands as an environmental sink for such xenobiotic compounds.

  19. Plant-bacteria bioremediation agents affect the response of plant bioindicators independent of 2-chlorobenzoic acid degradation

    SciTech Connect

    Siciliano, S.D.; Germida, J.J.

    1995-12-31

    Plants are known to degrade toxicants in soil and are potentially useful bioremediation agents. The authors developed plant-bacteria associations (e.g., Meadow brome [Bromus riparius] and Pseudomonas aeruginosa strain R75) that degrade 2-chlorobenzoic acid (2CBA) in soil, and assessed their success using Slender wheatgrass (Agropyron trachycaulum) germination as a bioindicator of 2CBA levels. Gas chromatography was used to chemically assess 2CBA levels. Specific plant-bacteria bioremediation treatments decreased soil 2CBA levels by 17 to 52%, but bioindicator response did not correspond to chemical analysis. Contaminated and uncontaminated soil was subjected to bioremediation treatments. After 42 days, uncontaminated soil was collected and amended to various 2CBA levels. This soil and the remediated soil were analyzed by the plant bioindicator and gas chromatography. Bioremediation treatments altered germination of Slender wheatgrass in both contaminated and noncontaminated soils to a similar extent. These treatments decreased the toxicity of 2CBA to Slender wheatgrass in both contaminated and noncontaminated soils to a similar extent. These treatments decreased the toxicity of 2CBA to Slender wheatgrass at low 2CBA levels, but increased the toxicity of 2CBA at high 2CBA levels. For example, germination in soil subjected to the Meadow brome and R75 treatment was increased by ca. 30% at 50 mg kg{sup {minus}1} 2CBA, but decreased by ca. 50% at 150 mg kg{sup {minus}1} 2CBA. The results indicate that specific plant-bacteria bioremediation treatments affect plant bioindicator response independent of 2CBA degradation, and may confound efforts to determine the toxicity of 2CBA in soil.

  20. Assessment of land degradation and its spatial and temporal variation in Beijing surrounding area

    NASA Astrophysics Data System (ADS)

    Li, Shuang; Dong, Suocheng; Zhang, Xiaojun; Zhiqiang, Gao

    2005-08-01

    The indulgence in willful persecution of sandstorm had made great attention of many countries around the world. Chinese government and the Chinese academy of science going with some other countries have devoted a large amount of vigor to study the crucial environment problem. Due to the main source areas of sandstorm all located in the arid and semi-arid regions where there have great area, hard natural condition and bad traffic condition, it's very difficult to accomplish source area and the reason of sandstorm. For this destination, a international cooperation organization has been established to clarify the occur mechanism, transfer process and the following environment impact of sandstorm. The organization includes many researchers come form USA, Japan, Korea, and so on. Beijing surrounding area is one of the main sandstorm sources in recent years. In order to understand fully of the sandstorm form and development, we analyzed the land use degradation of Beijing surrounding area during the last ten years. 71 scenes Landsat TM/ETM, 611 scenes DRG and DEM data had been processed in our study. This paper made a detail describe of using Landsat image data and high resolution DEM data to construe the soil erosion and vegetation degenerate. The result shows that the irrational human activities and land use style are the main factors of land use degradation. In case of Beijing surrounding area, the land degradation directly impacted the frequency and intensity of sand & dust storm in Northern China. The case study region of Beijing surrounding area includes 51 counties that belong to three provinces and autonomous regions.

  1. Degradation of biodegradable plastic mulch films in soil environment by phylloplane fungi isolated from gramineous plants

    PubMed Central

    2012-01-01

    To improve the biodegradation of biodegradable plastic (BP) mulch films, 1227 fungal strains were isolated from plant surface (phylloplane) and evaluated for BP-degrading ability. Among them, B47-9 a strain isolated from the leaf surface of barley showed the strongest ability to degrade poly-(butylene succinate-co-butylene adipate) (PBSA) and poly-(butylene succinate) (PBS) films. The strain grew on the surface of soil-mounted BP films, produced breaks along the direction of hyphal growth indicated that it secreted a BP-degrading enzyme, and has directly contributing to accelerating the degradation of film. Treatment with the culture filtrate decomposed 91.2 wt%, 23.7 wt%, and 14.6 wt% of PBSA, PBS, and commercially available BP polymer blended mulch film, respectively, on unsterlized soil within 6 days. The PCR-DGGE analysis of the transition of soil microbial community during film degradation revealed that the process was accompanied with drastic changes in the population of soil fungi and Acantamoeba spp., as well as the growth of inoculated strain B47-9. It has a potential for application in the development of an effective method for accelerating degradation of used plastics under actual field conditions. PMID:22856640

  2. Degradation of biodegradable plastic mulch films in soil environment by phylloplane fungi isolated from gramineous plants.

    PubMed

    Koitabashi, Motoo; Noguchi, Masako T; Sameshima-Yamashita, Yuka; Hiradate, Syuntaro; Suzuki, Ken; Yoshida, Shigenobu; Watanabe, Takashi; Shinozaki, Yukiko; Tsushima, Seiya; Kitamoto, Hiroko K

    2012-01-01

    To improve the biodegradation of biodegradable plastic (BP) mulch films, 1227 fungal strains were isolated from plant surface (phylloplane) and evaluated for BP-degrading ability. Among them, B47-9 a strain isolated from the leaf surface of barley showed the strongest ability to degrade poly-(butylene succinate-co-butylene adipate) (PBSA) and poly-(butylene succinate) (PBS) films. The strain grew on the surface of soil-mounted BP films, produced breaks along the direction of hyphal growth indicated that it secreted a BP-degrading enzyme, and has directly contributing to accelerating the degradation of film. Treatment with the culture filtrate decomposed 91.2 wt%, 23.7 wt%, and 14.6 wt% of PBSA, PBS, and commercially available BP polymer blended mulch film, respectively, on unsterlized soil within 6 days. The PCR-DGGE analysis of the transition of soil microbial community during film degradation revealed that the process was accompanied with drastic changes in the population of soil fungi and Acantamoeba spp., as well as the growth of inoculated strain B47-9. It has a potential for application in the development of an effective method for accelerating degradation of used plastics under actual field conditions. PMID:22856640

  3. E-Area Vault Concrete Material Property And Vault Durability/Degradation Projection Recommendations

    SciTech Connect

    Phifer, M. A.

    2014-03-11

    Subsequent to the 2008 E-Area Low-Level Waste Facility (ELLWF) Performance Assessment (PA) (WSRC 2008), two additional E-Area vault concrete property testing programs have been conducted (Dixon and Phifer 2010 and SIMCO 2011a) and two additional E-Area vault concrete durability modeling projections have been made (Langton 2009 and SIMCO 2012). All the information/data from these reports has been evaluated and consolidated herein by the Savannah River National Laboratory (SRNL) at the request of Solid Waste Management (SWM) to produce E-Area vault concrete hydraulic and physical property data and vault durability/degradation projection recommendations that are adequately justified for use within associated Special Analyses (SAs) and future PA updates. The Low Activity Waste (LAW) and Intermediate Level (IL) Vaults structural degradation predictions produced by Carey 2006 and Peregoy 2006, respectively, which were used as the basis for the 2008 ELLWF PA, remain valid based upon the results of the E-Area vault concrete durability simulations reported by Langton 2009 and those reported by SIMCO 2012. Therefore revised structural degradation predictions are not required so long as the mean thickness of the closure cap overlying the vaults is no greater than that assumed within Carey 2006 and Peregoy 2006. For the LAW Vault structural degradation prediction (Carey 2006), the mean thickness of the overlying closure cap was taken as nine feet. For the IL Vault structural degradation prediction (Peregoy 2006), the mean thickness of the overlying closure cap was taken as eight feet. The mean closure cap thicknesses as described here for both E-Area Vaults will be included as a key input and assumption (I&A) in the next revision to the closure plan for the ELLWF (Phifer et al. 2009). In addition, it has been identified as new input to the PA model to be assessed in the ongoing update to the new PA Information UDQE (Flach 2013). Once the UDQE is approved, the SWM Key I

  4. Woody plant encroachment paradox: Rivers rebound as degraded grasslands convert to woodlands

    NASA Astrophysics Data System (ADS)

    Wilcox, Bradford P.; Huang, Yun

    2010-04-01

    The related phenomena of degradation and woody plant encroachment have transformed huge tracts of rangelands. Woody encroachment is assumed to reduce groundwater recharge and streamflow. We analyzed the long-term (85 years) trends of four major river basins in the Edwards Plateau region of Texas. This region, in which springs are abundant because of the karst geology, has undergone degradation and woody encroachment. We found that, contrary to widespread perceptions, streamflows have not been declining. The contribution of baseflow has doubled—even though woody cover has expanded and rainfall amounts have remained constant. We attribute this increase in springflow to a landscape recovery that has taken place concurrently with woody expansion—a recovery brought about by lower grazing pressure. Our results indicate that for drylands where the geology supports springs, it is degradation and not woody encroachment that leads to regional-scale declines in groundwater recharge and streamflows.

  5. Predictive based monitoring of nuclear plant component degradation using support vector regression

    SciTech Connect

    Agarwal, Vivek; Alamaniotis, Miltiadis; Tsoukalas, Lefteri H.

    2015-02-01

    Nuclear power plants (NPPs) are large installations comprised of many active and passive assets. Degradation monitoring of all these assets is expensive (labor cost) and highly demanding task. In this paper a framework based on Support Vector Regression (SVR) for online surveillance of critical parameter degradation of NPP components is proposed. In this case, on time replacement or maintenance of components will prevent potential plant malfunctions, and reduce the overall operational cost. In the current work, we apply SVR equipped with a Gaussian kernel function to monitor components. Monitoring includes the one-step-ahead prediction of the component’s respective operational quantity using the SVR model, while the SVR model is trained using a set of previous recorded degradation histories of similar components. Predictive capability of the model is evaluated upon arrival of a sensor measurement, which is compared to the component failure threshold. A maintenance decision is based on a fuzzy inference system that utilizes three parameters: (i) prediction evaluation in the previous steps, (ii) predicted value of the current step, (iii) and difference of current predicted value with components failure thresholds. The proposed framework will be tested on turbine blade degradation data.

  6. Recognition and Degradation of Plant Cell Wall Polysaccharides by Two Human Gut Symbionts

    PubMed Central

    Chiang, Herbert; Pudlo, Nicholas A.; Wu, Meng; McNulty, Nathan P.; Abbott, D. Wade; Henrissat, Bernard; Gilbert, Harry J.; Bolam, David N.; Gordon, Jeffrey I.

    2011-01-01

    Symbiotic bacteria inhabiting the human gut have evolved under intense pressure to utilize complex carbohydrates, primarily plant cell wall glycans in our diets. These polysaccharides are not digested by human enzymes, but are processed to absorbable short chain fatty acids by gut bacteria. The Bacteroidetes, one of two dominant bacterial phyla in the adult gut, possess broad glycan-degrading abilities. These species use a series of membrane protein complexes, termed Sus-like systems, for catabolism of many complex carbohydrates. However, the role of these systems in degrading the chemically diverse repertoire of plant cell wall glycans remains unknown. Here we show that two closely related human gut Bacteroides, B. thetaiotaomicron and B. ovatus, are capable of utilizing nearly all of the major plant and host glycans, including rhamnogalacturonan II, a highly complex polymer thought to be recalcitrant to microbial degradation. Transcriptional profiling and gene inactivation experiments revealed the identity and specificity of the polysaccharide utilization loci (PULs) that encode individual Sus-like systems that target various plant polysaccharides. Comparative genomic analysis indicated that B. ovatus possesses several unique PULs that enable degradation of hemicellulosic polysaccharides, a phenotype absent from B. thetaiotaomicron. In contrast, the B. thetaiotaomicron genome has been shaped by increased numbers of PULs involved in metabolism of host mucin O-glycans, a phenotype that is undetectable in B. ovatus. Binding studies of the purified sensor domains of PUL-associated hybrid two-component systems in conjunction with transcriptional analyses demonstrate that complex oligosaccharides provide the regulatory cues that induce PUL activation and that each PUL is highly specific for a defined cell wall polymer. These results provide a view of how these species have diverged into different carbohydrate niches by evolving genes that target unique suites of

  7. Plant species influence on soil C after afforestation of Mediterranean degraded soils

    NASA Astrophysics Data System (ADS)

    Dominguez, Maria T.; García-Vargas, Carlos; Madejón, Engracia; Marañón, Teodoro

    2015-04-01

    Increasing C sequestration in terrestrial ecosystems is one of the main current environmental challenges to mitigate climate change. Afforestation of degraded and contaminated lands is one of the key strategies to achieve an increase in C sequestration in ecosystems. Plant species differ in their mechanisms of C-fixation, C allocation into different plant organs, and interaction with soil microorganisms, all these factors influencing the dynamics of soil C following the afforestation of degraded soils. In this work we examine the influence of different woody plant species on soil C dynamics in degraded and afforested Mediterranean soils. The soils were former agricultural lands that were polluted by a mining accident and later afforested with different native plant species. We analysed the effect of four of these species (Olea europaea var. sylvestris Brot., Populus alba L., Pistacia lentiscus L. and Retama sphaerocarpa (L.) Boiss.) on different soil C fractions, soil nutrient availability, microbial activity (soil enzyme activities) and soil CO2 fluxes 15 years after the establishment of the plantations. Results suggest that the influence of the planted trees and shrubs is still limited, being more pronounced in the more acidic and nutrient-poor soils. Litter accumulation varied among species, with the highest C accumulated in the litter under the deciduous species (Populus alba L.). No differences were observed in the amount of total soil organic C among the studied species, or in the concentrations of phenols and sugars in the dissolved organic C (DOC), which might have indicated differences in the biodegradability of the DOC. Microbial biomass and activity was highly influenced by soil pH, and plant species had a significant influence on soil pH in the more acidic site. Soil CO2 fluxes were more influenced by the plant species than total soil C content. Our results suggest that changes in total soil C stocks after the afforestation of degraded Mediterranean

  8. Riverine Dissolved Organic Matter Degradation Modeled Through Microbial Incubations of Vascular Plant Leachates

    NASA Astrophysics Data System (ADS)

    Harfmann, J.; Hernes, P.; Chuang, C. Y.

    2015-12-01

    Dissolved organic matter (DOM) contains as much carbon as is in the atmosphere, provides the main link between terrestrial and marine carbon reservoirs, and fuels the microbial food web. The fate and removal of DOM is a result of several complex conditions and processes, including photodegradation, sorption/desorption, dominant vascular plant sources, and microbial abundance. In order to better constrain factors affecting microbial degradation, laboratory incubations were performed using Sacramento River water for microbial inoculums and vascular plant leachates. Four vascular plant sources were chosen based on their dominance in the Sacramento River Valley: gymnosperm needles from Pinus sabiniana (foothill pine), angiosperm dicot leaves from Quercus douglassi (blue oak), angiosperm monocot mixed annual grasses, and angiosperm monocot mixed Schoenoplectus acutus (tule) and Typha spp. (cattails). Three concentrations of microbial inoculum were used for each plant material, ranging from 0.2% to 10%. Degradation was monitored as a function of time using dissolved organic carbon (DOC), UV-Vis absorbance, and fluorescent dissolved organic matter (fDOM), and was compared across vascular plant type and inoculum concentration.

  9. Correction: Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi

    PubMed Central

    2014-01-01

    Abstract The version of this article published in BMC Genomics 2013, 14: 274, contains 9 unpublished genomes (Botryobasidium botryosum, Gymnopus luxurians, Hypholoma sublateritium, Jaapia argillacea, Hebeloma cylindrosporum, Conidiobolus coronatus, Laccaria amethystina, Paxillus involutus, and P. rubicundulus) downloaded from JGI website. In this correction, we removed these genomes after discussion with editors and data producers whom we should have contacted before downloading these genomes. Removing these data did not alter the principle results and conclusions of our original work. The relevant Figures 1, 2, 3, 4 and 6; and Table 1 have been revised. Additional files 1, 3, 4, and 5 were also revised. We would like to apologize for any confusion or inconvenience this may have caused. Background Fungi produce a variety of carbohydrate activity enzymes (CAZymes) for the degradation of plant polysaccharide materials to facilitate infection and/or gain nutrition. Identifying and comparing CAZymes from fungi with different nutritional modes or infection mechanisms may provide information for better understanding of their life styles and infection models. To date, over hundreds of fungal genomes are publicly available. However, a systematic comparative analysis of fungal CAZymes across the entire fungal kingdom has not been reported. Results In this study, we systemically identified glycoside hydrolases (GHs), polysaccharide lyases (PLs), carbohydrate esterases (CEs), and glycosyltransferases (GTs) as well as carbohydrate-binding modules (CBMs) in the predicted proteomes of 94 representative fungi from Ascomycota, Basidiomycota, Chytridiomycota, and Zygomycota. Comparative analysis of these CAZymes that play major roles in plant polysaccharide degradation revealed that fungi exhibit tremendous diversity in the number and variety of CAZymes. Among them, some families of GHs and CEs are the most prevalent CAZymes that are distributed in all of the fungi analyzed

  10. Variability of land degradation along topographic transects in two Mediterranean areas

    NASA Astrophysics Data System (ADS)

    Kotb Abd-Elmabod, Sameh; Anaya-Romero, María; Phillips, Jonathan D.; Jordán, Antonio; Muñoz-Rojas, Miriam; de la Rosa, Diego

    2013-04-01

    This study aims to investigate the influence of topography, soil factors and climate conditions on land degradation along topographic transects in two Mediterranean areas: Seville (southern Spain) and El-Fayoum (northern Egypt). Elevation and slope gradient information from both study sites were obtained from Shuttle Radar Topography Mission (SRTM) data, processed using ENVI 4.7. Additionally, topographic transects were developed using ArcGIS 10 software. To represent the highest variability in elevation, lithology, soil and land use in each site, one representative topographic transect from El-Fayoum and two topographic transects from Seville were selected. Soil characteristics along each of the topographic transect were obtained by mapping land surveying and laboratory analyses data. MicroLEIS DSS (Pantanal and Raizal submodels) was used to assess soil contamination with phosphorus, nitrogen, heavy metals and pesticides and water erosion vulnerability along the topographic transects for each study site using soil data, including depth, texture, drainage, carbonate content, salinity, sodium saturation, organic matter content and acidity (pH). Additionally, monthly average values of climate variables (mean temperature, maximum and minimum rainfall and number of rainy days) have been used. The results obtained by Raizal and Pantanal models suggest that lower elevation areas from transects show low vulnerability classes in both degradation processes (water erosion and soil contamination), when compared to uplands. The variation of climate conditions and soil factors along the Seville and El-Fayoum transects were responsible for the observed variability in both soil degradation processes (erosion and contamination). Key words: MicroLEIS DSS, soil degradation, soil factors, topography, DEM

  11. Genomic characterization of plant cell wall degrading enzymes and in silico analysis of xylanses and polygalacturonases of Fusarium virguliforme

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Plant cell wall degrading enzymes (PCWDEs) are important effectors for plant pathogens to invade plants. In this study, the composition of PCWDEs in Fusarium virguliforme that were grown for 5-days and 20 days in liquid medium was determined by RNA-Seq. Differential expression analysis showed more P...

  12. Fragility Analysis Methodology for Degraded Structures and Passive Components in Nuclear Power Plants - Illustrated using a Condensate Storage Tank

    SciTech Connect

    Nie, J.; Braverman, J.; Hofmayer, C.; Choun, Y.; Kim, M.; Choi, I.

    2010-06-30

    The Korea Atomic Energy Research Institute (KAERI) is conducting a five-year research project to develop a realistic seismic risk evaluation system which includes the consideration of aging of structures and components in nuclear power plants (NPPs). The KAERI research project includes three specific areas that are essential to seismic probabilistic risk assessment (PRA): (1) probabilistic seismic hazard analysis, (2) seismic fragility analysis including the effects of aging, and (3) a plant seismic risk analysis. Since 2007, Brookhaven National Laboratory (BNL) has entered into a collaboration agreement with KAERI to support its development of seismic capability evaluation technology for degraded structures and components. The collaborative research effort is intended to continue over a five year period. The goal of this collaboration endeavor is to assist KAERI to develop seismic fragility analysis methods that consider the potential effects of age-related degradation of structures, systems, and components (SSCs). The research results of this multi-year collaboration will be utilized as input to seismic PRAs. In the Year 1 scope of work, BNL collected and reviewed degradation occurrences in US NPPs and identified important aging characteristics needed for the seismic capability evaluations. This information is presented in the Annual Report for the Year 1 Task, identified as BNL Report-81741-2008 and also designated as KAERI/RR-2931/2008. The report presents results of the statistical and trending analysis of this data and compares the results to prior aging studies. In addition, the report provides a description of U.S. current regulatory requirements, regulatory guidance documents, generic communications, industry standards and guidance, and past research related to aging degradation of SSCs. In the Year 2 scope of work, BNL carried out a research effort to identify and assess degradation models for the long-term behavior of dominant materials that are

  13. A prediction model of signal degradation in LMSS for urban areas

    NASA Technical Reports Server (NTRS)

    Matsudo, Takashi; Minamisono, Kenichi; Karasawa, Yoshio; Shiokawa, Takayasu

    1993-01-01

    A prediction model of signal degradation in a Land Mobile Satellite Service (LMSS) for urban areas is proposed. This model treats shadowing effects caused by buildings statistically and can predict a Cumulative Distribution Function (CDF) of signal diffraction losses in urban areas as a function of system parameters such as frequency and elevation angle and environmental parameters such as number of building stories and so on. In order to examine the validity of the model, we compared the percentage of locations where diffraction losses were smaller than 6 dB obtained by the CDF with satellite visibility measured by a radiometer. As a result, it was found that this proposed model is useful for estimating the feasibility of providing LMSS in urban areas.

  14. Traditional uses of plants in a rural community of Mozambique and possible links with Miombo degradation and harvesting sustainability

    PubMed Central

    2014-01-01

    Background Miombo woodlands play an important role in the livelihood of people living in sub-equatorial African countries, contributing to satisfy basic human needs such as food, medicine, fuelwood and building materials. However, over-exploitation of plant resources and unsustainable harvest practices can potentially degrade forests. The aim of this study was to document the use of Miombo plant products, other than medicinal plants, in local communities, within a wider framework in which we discussed possible links between traditional uses and conservation status of the used species and of the whole Miombo environment. Methods Fieldwork took place in four communities of Muda-Serração, central Mozambique. We conducted semi-structured interviews with 52 informants about their knowledge, use and harvesting practices of useful plants. A survey on local Miombo vegetation was also carried out in order to assess abundance and distribution of useful woody plants cited in the interviews in areas exposed to different exploitation rates. A Conservation Priority index was also applied to rank conservation values of each used woody species. Results Ninety-eight plants cited by the informants were botanically identified. The most relevant general category was represented by food plants (45 species), followed by handicraft plants (38 species) and domestic plants (37 species). Among the 54 woody species observed in vegetation plots, 52% were cited as useful in the interviews. Twenty-six woody species found in ‘natural’ Miombo areas were not found in ‘degraded’ ones: of these, 46% were cited in the interviews (58% in the food category, 50% in the handicraft category, 25% in the domestic category and 8% in the fishing category). Results of conservation ranking showed that 7 woody species deserve conservation priority in the investigated area. Conclusions This study shows that the communities investigated rely heavily on local forest products for their daily subsistence

  15. Effects of a coal-fired power plant on the rock lichen Rhizoplaca melanophthalma: chlorophyll degradation and electrolyte leakage

    USGS Publications Warehouse

    Belnap, Jayne; Harper, Kimball T.

    1990-01-01

    Chlorophyll degradation and electrolyte leakage were measured for the umbilicate desert lichen Rhizoplaca melanophthalma (Ram.) Leuck. & Poelt in the vicinity of a coal-fired power plant near Page, Arizona. Patterns of lichen damage indicated by chlorophyll degradation were similar to those indicated by electrolyte leakage. Regression analyses of chlorophyll degradation as well as electrolyte leakage on distance from the power plant were significant (p < 0.001), suggesting that lichen damage decreased with increasing distance from the power plant. Mean values for both variables at the two sites closest to the power plant (7 and 12 km) differed significantly from values for the two sites farthest from the plant (21 and 42 km; p < 0.001). Mean values within each group (7 and 12 km; 21 and 42 km) do not differ significantly for either parameter. It is suggested that effluents from the power plant combine with local weather factors to produce the observed levels of damage.

  16. Modeling the effect of terraces on land degradation in tropical upland agricultural area

    NASA Astrophysics Data System (ADS)

    Christanto, N.; Shrestha, D. P.; Jetten, V. G.; Setiawan, A.

    2012-04-01

    Java, the most populated Island in Indonesia, in the pas view decades suffer land degradation do to extreme weather, population pressure and landuse/cover change. The study area, Serayu sub-catchment, as part of Serayu catchment is one of the representative example of Indonesia region facing land use change and land degradation problem. The study attempted to simulate the effect of terraces on land degradation (Soil erosion and landslide hazard) in Serayu sub-catchment using deterministic modeling by means of PCRaster® simulation. The effect of the terraces on tropical upland agricultural area is less studied. This paper will discuss about the effect of terraces on land degradation assessment. Detail Dem is extremely difficult to obtain in developing country like Indonesia. Therefore, an artificial DEM which give an impression of the terraces was built. Topographical maps, Ikonos Image and average of height distribution based on field measurement were used to build the artificial DEM. The result is used in STARWARS model as an input. In combine with Erosion model and PROBSTAB, soil erosion and landslide hazard were quantified. The models were run in two different environment based on the: 1) normal DEM 2.) Artificial DEM (with terraces impression). The result is compared. The result shows that the models run in an artificial DEM give a significant increase on the probability of failure by 20.5%. In the other hand, the erosion rate has fall by 11.32% as compared to the normal DEM. The result of hydrological sensitivity analysis shows that soil depth was the most sensitive parameter. For the slope stability modeling, the most sensitive parameter was slope followed by friction angle and cohesion. The erosion modeling, the model was sensitive to the vegetation cover, soil erodibility followed by BD and KSat. Model validations were applied to assess the accuracy of the models. However, the results of dynamic modeling are ideal for land degradation assessment. Dynamic

  17. Degradation kinetics of chlorinated aliphatic hydrocarbons by methane oxidizers naturally-associated with wetland plant roots.

    PubMed

    Powell, C L; Goltz, M N; Agrawal, A

    2014-12-01

    Chlorinated aliphatic hydrocarbons (CAHs) are common groundwater contaminants that can be removed from the environment by natural attenuation processes. CAH biodegradation can occur in wetland environments by reductive dechlorination as well as oxidation pathways. In particular, CAH oxidation may occur in vegetated wetlands, by microorganisms that are naturally associated with the roots of wetland plants. The main objective of this study was to evaluate the cometabolic degradation kinetics of the CAHs, cis-1,2-dichloroethene (cisDCE), trichloroethene (TCE), and 1,1,1-trichloroethane (1,1,1TCA), by methane-oxidizing bacteria associated with the roots of a typical wetland plant in soil-free system. Laboratory microcosms with washed live roots investigated aerobic, cometabolic degradation of CAHs by the root-associated methane-oxidizing bacteria at initial aqueous [CH4] ~1.9mgL(-1), and initial aqueous [CAH] ~150μgL(-1); cisDCE and TCE (in the presence of 1,1,1TCA) degraded significantly, with a removal efficiency of approximately 90% and 46%, respectively. 1,1,1TCA degradation was not observed in the presence of active methane oxidizers. The pseudo first-order degradation rate-constants of TCE and cisDCE were 0.12±0.01 and 0.59±0.07d(-1), respectively, which are comparable to published values. However, their biomass-normalized degradation rate constants obtained in this study were significantly smaller than pure-culture studies, yet they were comparable to values reported for biofilm systems. The study suggests that CAH removal in wetland plant roots may be comparable to processes within biofilms. This has led us to speculate that the active biomass may be on the root surface as a biofilm. The cisDCE and TCE mass losses due to methane oxidizers in this study offer insight into the role of shallow, vegetated wetlands as an environmental sink for such xenobiotic compounds. PMID:25444117

  18. Oxidative Stress in Fungi: Its Function in Signal Transduction, Interaction with Plant Hosts, and Lignocellulose Degradation

    PubMed Central

    Breitenbach, Michael; Weber, Manuela; Rinnerthaler, Mark; Karl, Thomas; Breitenbach-Koller, Lore

    2015-01-01

    In this review article, we want to present an overview of oxidative stress in fungal cells in relation to signal transduction, interaction of fungi with plant hosts, and lignocellulose degradation. We will discuss external oxidative stress which may occur through the interaction with other microorganisms or plant hosts as well as internally generated oxidative stress, which can for instance originate from NADPH oxidases or “leaky” mitochondria and may be modulated by the peroxiredoxin system or by protein disulfide isomerases thus contributing to redox signaling. Analyzing redox signaling in fungi with the tools of molecular genetics is presently only in its beginning. However, it is already clear that redox signaling in fungal cells often is linked to cell differentiation (like the formation of perithecia), virulence (in plant pathogens), hyphal growth and the successful passage through the stationary phase. PMID:25854186

  19. Plant-Associated Bacterial Degradation of Toxic Organic Compounds in Soil

    PubMed Central

    McGuinness, Martina; Dowling, David

    2009-01-01

    A number of toxic synthetic organic compounds can contaminate environmental soil through either local (e.g., industrial) or diffuse (e.g., agricultural) contamination. Increased levels of these toxic organic compounds in the environment have been associated with human health risks including cancer. Plant-associated bacteria, such as endophytic bacteria (non-pathogenic bacteria that occur naturally in plants) and rhizospheric bacteria (bacteria that live on and near the roots of plants), have been shown to contribute to biodegradation of toxic organic compounds in contaminated soil and could have potential for improving phytoremediation. Endophytic and rhizospheric bacterial degradation of toxic organic compounds (either naturally occurring or genetically enhanced) in contaminated soil in the environment could have positive implications for human health worldwide and is the subject of this review. PMID:19742157

  20. Plant biomass degrading ability of the coprophilic ascomycete fungus Podospora anserina.

    PubMed

    Couturier, Marie; Tangthirasunun, Narumon; Ning, Xie; Brun, Sylvain; Gautier, Valérie; Bennati-Granier, Chloé; Silar, Philippe; Berrin, Jean-Guy

    2016-01-01

    The degradation of plant biomass is a major challenge towards the production of bio-based compounds and materials. As key lignocellulolytic enzyme producers, filamentous fungi represent a promising reservoir to tackle this challenge. Among them, the coprophilous ascomycete Podospora anserina has been used as a model organism to study various biological mechanisms because its genetics are well understood and controlled. In 2008, the sequencing of its genome revealed a great diversity of enzymes targeting plant carbohydrates and lignin. Since then, a large array of lignocellulose-acting enzymes has been characterized and genetic analyses have enabled the understanding of P. anserina metabolism and development on plant biomass. Overall, these research efforts shed light on P. anserina strategy to unlock recalcitrant lignocellulose deconstruction. PMID:27263000

  1. Simulating Leaf Area of Corn Plants at Contrasting Water Status

    Technology Transfer Automated Retrieval System (TEKTRAN)

    An exponential decay function was fitted with literature data to describe the decrease in leaf expansion rate as leaf water potential decreases. The fitted function was then applied to modify an existing leaf area simulation module in a soil-plant-atmosphere continuum model in order to simulate leaf...

  2. Level area surrounding Facility 314 showing the planted ring that ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Level area surrounding Facility 314 showing the planted ring that contains the radial ground wires, note the ring beneath the antenna circles is cleared of vegetation and covered with gravel, view facing southwest - U.S. Naval Base, Pearl Harbor, Naval Radio Station, AF/FRD-10 Circularly Disposed Antenna Array, Wahiawa, Honolulu County, HI

  3. Characterization of 4-nonylphenol-degrading bacterial consortium obtained from a textile wastewater pretreatment plant.

    PubMed

    Di Gioia, Diana; Salvadori, Laura; Zanaroli, Giulio; Coppini, Ester; Fava, Fabio; Barberio, Claudia

    2008-12-01

    4-Nonylphenol (4-NP) isomers are toxic and recalcitrant compounds often resulting, together with short-chain ethoxylated nonylphenol (NPnEO, where n is the number of ethylene oxide units), from NPnEO biodegradation in conventional activated sludge plants. In this work, a microbial consortium, defined as Consortium A, capable of removing 100 mg/L of 4-NP with no accumulation of metabolites with aromatic moiety was isolated from textile wastewaters after enrichment with 4-NP. The consortium showed remarkable degradation activities toward several short-chain NPnEO congeners. Culture-dependent techniques were used to isolate from the consortium twenty-six strains assigned to seven different amplified ribosomal DNA restriction analysis groups. Two- and three-member cocultures were prepared with the strains showing highest 4-NP-degrading capabilities, but neither the single strains nor the cocultures were as efficient in 4-NP degradation as Consortium A. FISH was used to characterize the microbial composition of Consortium A: it evidenced a strong occurrence of Proteobacteria and, in particular, of Gammaproteobacteria along with a relevant stability of the culture. Therefore, the isolated consortium has the potential of being used in the development of a biotechnological process for the tertiary treatment of effluents of activated sludge plants fed with NPnEO-contaminated wastewaters. PMID:18830582

  4. Unsaturated lipid matrices protect plant sterols from degradation during heating treatment.

    PubMed

    Barriuso, Blanca; Astiasarán, Iciar; Ansorena, Diana

    2016-04-01

    The interest in plant sterols enriched foods has recently enhanced due to their healthy properties. The influence of the unsaturation degree of different fatty acids methyl esters (FAME: stearate, oleate, linoletate and linolenate) on a mixture of three plant sterols (PS: campesterol, stigmasterol and β-sitosterol) was evaluated at 180 °C for up to 180 min. Sterols degraded slower in the presence of unsaturated FAME. Both PS and FAME degradation fit a first order kinetic model (R(2)>0.9). Maximum oxysterols concentrations were achieved at 20 min in neat PS and 120 min in lipid mixtures and this maximum amount decreased with increasing their unsaturation degree. In conclusion, the presence of FAME delayed PS degradation and postponed oxysterols formation. This protective effect was further promoted by increasing the unsaturation degree of FAME. This evidence could help industries to optimize the formulation of sterol-enriched products, so that they could maintain their healthy properties during cooking or processing. PMID:26593514

  5. Anaerobic Methyl tert-Butyl Ether-Degrading Microorganisms Identified in Wastewater Treatment Plant Samples by Stable Isotope Probing

    PubMed Central

    Sun, Weimin; Sun, Xiaoxu

    2012-01-01

    Anaerobic methyl tert-butyl ether (MTBE) degradation potential was investigated in samples from a range of sources. From these 22 experimental variations, only one source (from wastewater treatment plant samples) exhibited MTBE degradation. These microcosms were methanogenic and were subjected to DNA-based stable isotope probing (SIP) targeted to both bacteria and archaea to identify the putative MTBE degraders. For this purpose, DNA was extracted at two time points, subjected to ultracentrifugation, fractioning, and terminal restriction fragment length polymorphism (TRFLP). In addition, bacterial and archaeal 16S rRNA gene clone libraries were constructed. The SIP experiments indicated bacteria in the phyla Firmicutes (family Ruminococcaceae) and Alphaproteobacteria (genus Sphingopyxis) were the dominant MTBE degraders. Previous studies have suggested a role for Firmicutes in anaerobic MTBE degradation; however, the putative MTBE-degrading microorganism in the current study is a novel MTBE-degrading phylotype within this phylum. Two archaeal phylotypes (genera Methanosarcina and Methanocorpusculum) were also enriched in the heavy fractions, and these organisms may be responsible for minor amounts of MTBE degradation or for the uptake of metabolites released from the primary MTBE degraders. Currently, limited information exists on the microorganisms able to degrade MTBE under anaerobic conditions. This work represents the first application of DNA-based SIP to identify anaerobic MTBE-degrading microorganisms in laboratory microcosms and therefore provides a valuable set of data to definitively link identity with anaerobic MTBE degradation. PMID:22327600

  6. Enhanced Degradation of Diesel in the Rhizosphere of after Inoculation with Diesel-Degrading and Plant Growth-Promoting Bacterial Strains.

    PubMed

    Balseiro-Romero, María; Gkorezis, Panagiotis; Kidd, Petra S; Vangronsveld, Jaco; Monterroso, Carmen

    2016-05-01

    The association of plants and rhizospheric bacteria provides a successful strategy to clean up contaminated soils. The purpose of this work was to enhance diesel degradation in rhizosphere by inoculation with selected bacterial strains: a diesel degrader (D), plant growth-promoting (PGP) strains, or a combination (D+PGP). Plants were set up in pots with the A or B horizon of an umbric Cambisol (A and B) spiked with diesel (1.25%, w/w). After 1 mo, the dissipation of diesel range organics (DRO) with respect to = 0 (i.e., 1 wk after preparing the pots with the seedlings) concentration was significantly higher in inoculated than in noninoculated (NI) pots: The highest DRO losses were found in A D+PGP pots (close to 15-20% higher than NI) and in B D pots (close to 10% higher). The water-extractable DRO fraction was significantly higher at = 30 d (15-25%) compared with = 0 (<5%), probably due to the effects of plant root exudates and biosurfactants produced by the degrader strain. The results of this experiment reflect the importance of the partnerships between plants and bacterial inoculants and demonstrate the relevance of the effect of bacterial biosurfactants and plant root exudates on contaminant bioavailability, a key factor for enhancing diesel rhizodegradation. The association of lupine with D and PGP strains resulted in a promising combination for application in the rhizoremediation of soils with moderate diesel contamination. PMID:27136159

  7. Assessing and Understanding Trail Degradation: Results from Big South Fork National River and Recreational Area

    USGS Publications Warehouse

    Marion, J.L.; Olive, N.

    2006-01-01

    This report describes results from a comprehensive assessment of resource conditions on a large (24%) sample of the trail system within Big South Fork National River and Recreational Area (BSF). Components include research to develop state-of-knowledge trail impact assessment and monitoring methods, application of survey methods to BSF trails, analysis and summary of results, and recommendations for trail management decision making and future monitoring. Findings reveal a trail system with some substantial degradation, particularly soil erosion, which additionally threatens water quality in areas adjacent to streams and rivers. Factors that contribute to or influence these problems are analyzed and described. Principal among these are trail design factors (trail topographic position, soil texture, grade and slope alignment angle), use-related factors (type and amount of use), and maintenance factors (water drainage). Recommendations are offered to assist managers in improving the sustainability of the trails system to accommodate visitation while enhancing natural resource protection.

  8. An Extensive Alien Plant Inventory from the Inhabited Areas of Galapagos

    PubMed Central

    Guézou, Anne; Trueman, Mandy; Buddenhagen, Christopher Evan; Chamorro, Susana; Guerrero, Ana Mireya; Pozo, Paola; Atkinson, Rachel

    2010-01-01

    Background Plant invasions are causing habitat degradation in Galapagos. Problems are concentrated on the four inhabited islands. Plants introduced to rural areas in the humid highlands and urban areas on the arid coast act as foci for invasion of the surrounding Galapagos National Park. Methodology/Principal Findings Here we present results of the most comprehensive inventory to date of alien vascular plants in the inhabited areas of Galapagos. The survey was conducted between 2002 and 2007, in 6031 properties (97% of the total) on Floreana, Isabela, San Cristobal and Santa Cruz Islands. In total 754 alien vascular plant taxa were recorded, representing 468 genera in 123 families. Dicotyledons represented 554 taxa, monocotyledons 183, there were 7 gymnosperms and 10 pteridophytes. Almost half (363) of the taxa were herbaceous. The most represented families were Fabaceae (sensu lato), Asteraceae and Poaceae. The three most recorded species in the humid rural areas were Psidium guajava, Passiflora edulis and Bryophyllum pinnatum, and in the dry urban areas, Aloe vera, Portulaca oleracea and Carica papaya. In total, 264 (35%) taxa were recorded as naturalized. The most common use for taxa was ornamental (52%). Conclusions/Significance This extensive survey has increased the known alien vascular flora of Galapagos by 257 species, giving a ratio of alien to native taxa of 1.57∶1. It provides a crucial baseline for plant invasion management in the archipelago and contributes data for meta analyses of invasion processes worldwide. A repeat of the survey in the future would act as an effective early detection tool to help avoid further invasion of the Galapagos National Park. PMID:20421999

  9. Land degradation monitoring in the Ocnele Mari salt mining area using satellite imagery

    NASA Astrophysics Data System (ADS)

    Poenaru, Violeta D.; Badea, Alexandru; Savin, Elena; Teleaga, Delia; Poncos, Valentin

    2011-11-01

    Mining is an important activity contributing to the economic development with long lasting environmental impacts. A major disaster took place in 2001 in Ocnele Mari salt mining area located in the central-south part of Romania when the artificial lake brine was poured in rural areas, devastating homes and polluting the Olt River. Towards a sustainable and harmonious development of the Ocnele Mari area, the Romanian Authorities decided to ecology and rehabilitate it. This ongoing project is focused on land degradation monitoring from 2001 disasters until now. High Resolution Spotlight TerraSar-X synthetic aperture radar data acquired within TerraSAR-X proposal LAN0778 are used to analyze terrain deformation by interferometric techniques knowing the mine subsidence is not constant; periods of relative stability are followed by quick deformation. The rocks forming in the region situated above the salt cushion have very low mechanical resistance and high intergranular fissured permeability so the hill's slopes are affected by landslides which are reactivated periodically. Additionally, analysis of the vegetation coverage (leaf area index and normalized difference vegetation index) from the optical data gathered by different sensors such as LANDSAT and MODIS combined with the meteorological data (temperature, wind speed, humidity and solar radiation) provide indicators for the land degradation. The results will be validating on ancillary data. Satellite derived information in conjunction with in-situ measurements can provide valuable information for existing conservation development models for defining the essential elements of a planning process designed to maximize the values provided by salt ponds from Ocnele Mari.

  10. Microbial degradation of polycyclic aromatic hydrocarbon and cyanide in soils from manufactured gas plant sites

    SciTech Connect

    Ho, YiFong.

    1993-01-01

    The microbial clean-up of cyanide and polycyclic aromatic hydrocarbon (PAH) in soils from manufactured gas plant (MGP) sites is the subject of this study. Cyanide was examined for its inhibition on microbial PAH degradation by an MGP-soil isolate identified as a strain of Pseudomonas aeruginosa by classical differential methods as well as 16S rRNA oligonucleotide probes. A strong cyanide-degrading Bacillus pumilus (ATCC No. 7061) strain was used for facilitating cyanide degradation thereby enhancing PAH biodegradation in this soil. This research has validated cyanide interference with the PAH degrader and shown that adding Bacillus pumilus accomplishes the removal of cyanide which subsequently allows Pseudomonas aeruginosa to metabolize PAHs. In addition to the biodegradation of cyanide and lower ring numbered PAHs, the microbial degradation of 4-ring polycyclic aromatic hydrocarbons (PAHs) by using a mixed culture obtained from another former coal tar contaminated site was also studied. The rate of biotransformation and the abiotic loss due to volatilization were monitored. The 3-ring PAH used in this project was phenanthrene and the 4-ring PAHs used were fluoranthene and pyrene. The results showed that volatilization loss of naphthalene in the control system was substantial while volatilization of higher molecular weight PAH compounds (fluoranthene and pyrene) was negligible. The biodegradation rates of phenanthrene, fluoranthene and pyrene are 6.56, 1.59 and 0.82 mg/L/day, respectively or 65.6, 15.9, 8.2 mg/gram of cells/day assuming 100 mg cells/L in the system. This study indicates that biodegradation of 3- and 4-ring PAHs by mixed cultures obtained from PAH contaminated sites is very promising. These studies will contribute to the understanding of PAH and cyanide removal from MGP and provide information for the design of a bioremediation project to reclaim unusable land that was contaminated through the previous coal gasification process.

  11. Effect of enhanced reactive nitrogen availability on plant-sediment mediated degradation of polycyclic aromatic hydrocarbons in contaminated mangrove sediment.

    PubMed

    Jiang, Shan; Lu, Haoliang; Zhang, Qiong; Liu, JingChun; Yan, Chongling

    2016-02-15

    As land-ocean interaction zones, mangrove systems receive substantial polycyclic aromatic hydrocarbons (PAHs) from sewage and combustion of fossil fuel. In this study, we investigated the relationship between dissolved inorganic nitrogen (DIN) availability and degradation rate of phenanthrene, a typical PAH compound, in mangrove plant-sediment systems, using Avicennia marina as a model plant. After 50day incubation, phenanthrene removal ratios in sediments ranged from 53.8% to 97.2%. In non-rhizosphere sediment, increasing DIN accessibility increased microbial biomass and total microbial activity, while enhancements in population size of phenanthrene degradation bacteria (PDB) and phenanthrene degradation rates were insignificant. In contrast, the presence of excessive DIN in rhizosphere sediment resulted in a significantly large number of PDB, leading to a rapid dissipation rate of phenanthrene. The differences in degradation rates and abundances of degrader in sediment may be explained by the enhanced root activity due to the elevation in DIN accessibility. PMID:26749225

  12. Investigation of Metal Uptake and Translocation in Wetland Plants from Urban Coastal Areas

    NASA Astrophysics Data System (ADS)

    Feng, H.; Zhang, W.; Qian, Y.; Liu, W.; Yu, L.; Jones, K. W.; Liu, C.; Tappero, R.

    2013-12-01

    This research mainly focused on the use of synchrotron micro XRF technique to study the mechanisms of metal uptake by plants in conjunction with other measurements to provide insight metal concentrations and distributions in the rhizosphere root system. Many urban-industrial areas exhibit environmental degradation. One of the most common issues is sediment metal contamination resulting from past industrial land uses. The wetland ecosystem in urban coastal areas, such as New Jersey, USA, and Shanghai, China, is a unique laboratory for investigating sediment remediation and wetland ecological rehabilitations. Understanding the natural processes that control the mobility of metals in wetland plants is important to understand the metal biochemical cycle. Wetland plants can uptake metals from rhizosphere soils through their root system and store these metals within the plant biomass. The accumulation of metals in wetland plants provides a potential approach for brownfield remediation and wetland restoration. In the rhizosphere, the role of Fe plaque, which forms on the surface of wetland plant roots, has been an issue of debate in controlling metal biogeochemical cycle. It was reported that due to the large specific surface area of iron-oxides for metal sequestration, Fe plaque can provide a reactive substrate to scavenge metals. Several early studies suggest that the Fe plaque serves as a barrier preventing heavy metals from entering plant roots. However, others suggest that Fe plaque is not the main barrier. Therefore, investigation of the natural processes that control the mobility of metals from sediment to wetland plants is a critical step in understanding metal translocation and geochemical cycling in wetlands. In this study we found that metal concentrations and distributions in the root cross section from the epidermis to the vascular cylinder were apparently different. Two clusters of metal distributions were seen with Fe and Pb mainly distributed in the

  13. Effects of ephemeral gully erosion on soil degradation in a cultivated area in Sicily

    NASA Astrophysics Data System (ADS)

    La Spada, Carmelo; Capra, Antonina; Gelsomino, Antonio; Ollobarren del Barrio, Paul

    2015-04-01

    Water erosion is the main cause of soil degradation on cultivated lands under Mediterranean climate. In this conditions, gully erosion is a major contributor to loss of soil productivity due to the big amounts of soil removed from the most productive top-layer. However, only few studies on the effects of gully erosion and artificial controlling measures on soil degradation are available. The study analyzes the effects of the ephemeral gully erosion and infilling by tillage operations on several physical-chemical soil properties influencing the soil productivity. The study area is located in the center of Sicily, in an agricultural context characterized by ephemeral gully erosion. Five fields with different crops and soil characteristics affected by this type of erosion were selected. Currently, local farmers adopt the artificial measure to gully filling activities to control gully erosion and continue the same agricultural management practice. Therefore, the studied ephemeral gullies show a cyclic behavior. They appear during the rainy season, are erased from July to October by soil infill from areas adjacent to the channel using ordinary tillage equipment, and, in most years, they reappear in the same position during the following rainy season. For each situation, 20 samples were taken, located on 5 transects in the direction perpendicular to the ephemeral gully, in specific positions: 2 outside the erosive channel (one in the valley-deposit area and one upstream of the basin in the undisturbed area), and 3 along the same. For each transect, the samples were collected in 4 different positions: one inside the ephemeral gully, the other 3 in external points spaced to represent the areas affected by the annual process of erosion and infilling of the gully. For each sample, a set of the main chemical and physical soil characteristics which influence the soil fertility were determined: particle size, pH, electrical conductivity, total content of carbonates, nitrates

  14. Steam generator tube degradation at the Doel 4 plant influence on plant operation and safety

    SciTech Connect

    Scheveneels, G.

    1997-02-01

    The steam generator tubes of Doel 4 are affected by a multitude of corrosion phenomena. Some of them have been very difficult to manage because of their extremely fast evolution, non linear evolution behavior or difficult detectability and/or measurability. The exceptional corrosion behavior of the steam generator tubes has had its drawbacks on plant operation and safety. Extensive inspection and repair campaigns have been necessary and have largely increased outage times and radiation exposure to personnel. Although considerable effort was invested by the utility to control corrosion problems, non anticipated phenomena and/or evolution have jeopardized plant safety. The extensive plugging and repairs performed on the steam generators have necessitated continual review of the design basis safety studies and the adaptation of the protection system setpoints. The large asymmetric plugging has further complicated these reviews. During the years many preventive and recently also defence measures have been implemented by the utility to manage corrosion and to decrease the probability and consequences of single or multiple tube rupture. The present state of the Doel 4 steam generators remains troublesome and further examinations are performed to evaluate if continued operation until June `96, when the steam generators will be replaced, is justified.

  15. Speciation and degradation of triphenyltin in typical paddy fields and its uptake into rice plants.

    PubMed

    Antes, Fabiane G; Krupp, Eva; Flores, Erico M M; Dressler, Valderi L; Feldmann, Joerg

    2011-12-15

    Triphenyltin (TPhT) is a biocide used worldwide in agriculture, especially in rice crop farming. The distribution and dissipation of TPhT in rice fields, as well as uptake of TPhT and other phenyltin compounds (monophenyltin, MPhT, and diphenyltin, DPhT) is still unknown at present. In this study, speciation analysis of phenyltin compounds was carried out in soil and water from a rice field where TPhT was applied during rice seeding according to legal application rates in Brazil. The results indicate the degradation of biocide and distribution of tin species into soil and water. To evaluate whether TPhT is taken up by plants, rice plants were exposed to three different TPhT application rates in a controlled mesocosm during 7 weeks. After this period, tin speciation was determined in soil, roots, leaves, and grains of rice. Degradation of TPhT was observed in soil, where DPhT and MPhT were detected. MPhT, DPhT, and TPhT were also detected in the roots of plants exposed to all TPhT application rates. Only TPhT was detected in leaves and at relatively low concentration, suggesting selective transport of TPhT in the xylem, in contrast to DPhT and MPhT. Concentration of phenyltin species in rice grains was lower than the limit of detection, suggesting that rice plants do not have the capability to take up TPhT from soil and transport it to the grains. PMID:22074207

  16. Diversity of beetle genes encoding novel plant cell wall degrading enzymes.

    PubMed

    Pauchet, Yannick; Wilkinson, Paul; Chauhan, Ritika; Ffrench-Constant, Richard H

    2010-01-01

    Plant cell walls are a heterogeneous mixture of polysaccharides and proteins that require a range of different enzymes to degrade them. Plant cell walls are also the primary source of cellulose, the most abundant and useful biopolymer on the planet. Plant cell wall degrading enzymes (PCWDEs) are therefore important in a wide range of biotechnological processes from the production of biofuels and food to waste processing. However, despite the fact that the last common ancestor of all deuterostomes was inferred to be able to digest, or even synthesize, cellulose using endogenous genes, all model insects whose complete genomes have been sequenced lack genes encoding such enzymes. To establish if the apparent "disappearance" of PCWDEs from insects is simply a sampling problem, we used 454 mediated pyrosequencing to scan the gut transcriptomes of beetles that feed on a variety of plant derived diets. By sequencing the transcriptome of five beetles, and surveying publicly available ESTs, we describe 167 new beetle PCWDEs belonging to eight different enzyme families. This survey proves that these enzymes are not only present in non-model insects but that the multigene families that encode them are apparently undergoing complex birth-death dynamics. This reinforces the observation that insects themselves, and not just their microbial symbionts, are a rich source of PCWDEs. Further it emphasises that the apparent absence of genes encoding PCWDEs from model organisms is indeed simply a sampling artefact. Given the huge diversity of beetles alive today, and the diversity of their lifestyles and diets, we predict that beetle guts will emerge as an important new source of enzymes for use in biotechnology. PMID:21179425

  17. Microbial degradation of plant leachate alters lignin phenols and trihalomethane precursors

    USGS Publications Warehouse

    Pellerin, Brian A.; Hernes, Peter J.; Saraceno, John Franco; Spencer, Robert G.M.; Bergamaschi, Brian A.

    2010-01-01

    Although the importance of vascular plant-derived dissolved organic carbon (DOC) in freshwater systems has been studied, the role of leached DOC as precursors of disinfection byproducts (DBPs) during drinking water treatment is not well known. Here we measured the propensity of leachates from four crops and four aquatic macrophytes to form trihalomethanes (THMs)—a regulated class of DBPs—before and after 21 d of microbial degradation. We also measured lignin phenol content and specific UV absorbance (SUVA254) to test the assumption that aromatic compounds from vascular plants are resistant to microbial degradation and readily form DBPs. Leaching solubilized 9 to 26% of total plant carbon, which formed 1.93 to 6.72 mmol THM mol C-1 However, leachate DOC concentrations decreased by 85 to 92% over the 21-d incubation, with a concomitant decrease of 67 to 92% in total THM formation potential. Carbon-normalized THM yields in the residual DOC pool increased by 2.5 times on average, consistent with the preferential uptake of nonprecursor material. Lignin phenol concentrations decreased by 64 to 96% over 21 d, but a lack of correlation between lignin content and THM yields or SUVA254 suggested that lignin-derived compounds are not the source of increased THM precursor yields in the residual DOC pool. Our results indicate that microbial carbon utilization alters THM precursors in ecosystems with direct plant leaching, but more work is needed to identify the specific dissolved organic matter components with a greater propensity to form DBPs and affect watershed management, drinking water quality, and human health.

  18. Escaping Underground Nets: Extracellular DNases Degrade Plant Extracellular Traps and Contribute to Virulence of the Plant Pathogenic Bacterium Ralstonia solanacearum.

    PubMed

    Tran, Tuan Minh; MacIntyre, April; Hawes, Martha; Allen, Caitilyn

    2016-06-01

    Plant root border cells have been recently recognized as an important physical defense against soil-borne pathogens. Root border cells produce an extracellular matrix of protein, polysaccharide and DNA that functions like animal neutrophil extracellular traps to immobilize pathogens. Exposing pea root border cells to the root-infecting bacterial wilt pathogen Ralstonia solanacearum triggered release of DNA-containing extracellular traps in a flagellin-dependent manner. These traps rapidly immobilized the pathogen and killed some cells, but most of the entangled bacteria eventually escaped. The R. solanacearum genome encodes two putative extracellular DNases (exDNases) that are expressed during pathogenesis, suggesting that these exDNases contribute to bacterial virulence by enabling the bacterium to degrade and escape root border cell traps. We tested this hypothesis with R. solanacearum deletion mutants lacking one or both of these nucleases, named NucA and NucB. Functional studies with purified proteins revealed that NucA and NucB are non-specific endonucleases and that NucA is membrane-associated and cation-dependent. Single ΔnucA and ΔnucB mutants and the ΔnucA/B double mutant all had reduced virulence on wilt-susceptible tomato plants in a naturalistic soil-soak inoculation assay. The ΔnucA/B mutant was out-competed by the wild-type strain in planta and was less able to stunt root growth or colonize plant stems. Further, the double nuclease mutant could not escape from root border cells in vitro and was defective in attachment to pea roots. Taken together, these results demonstrate that extracellular DNases are novel virulence factors that help R. solanacearum successfully overcome plant defenses to infect plant roots and cause bacterial wilt disease. PMID:27336156

  19. Escaping Underground Nets: Extracellular DNases Degrade Plant Extracellular Traps and Contribute to Virulence of the Plant Pathogenic Bacterium Ralstonia solanacearum

    PubMed Central

    Tran, Tuan Minh; MacIntyre, April; Hawes, Martha; Allen, Caitilyn

    2016-01-01

    Plant root border cells have been recently recognized as an important physical defense against soil-borne pathogens. Root border cells produce an extracellular matrix of protein, polysaccharide and DNA that functions like animal neutrophil extracellular traps to immobilize pathogens. Exposing pea root border cells to the root-infecting bacterial wilt pathogen Ralstonia solanacearum triggered release of DNA-containing extracellular traps in a flagellin-dependent manner. These traps rapidly immobilized the pathogen and killed some cells, but most of the entangled bacteria eventually escaped. The R. solanacearum genome encodes two putative extracellular DNases (exDNases) that are expressed during pathogenesis, suggesting that these exDNases contribute to bacterial virulence by enabling the bacterium to degrade and escape root border cell traps. We tested this hypothesis with R. solanacearum deletion mutants lacking one or both of these nucleases, named NucA and NucB. Functional studies with purified proteins revealed that NucA and NucB are non-specific endonucleases and that NucA is membrane-associated and cation-dependent. Single ΔnucA and ΔnucB mutants and the ΔnucA/B double mutant all had reduced virulence on wilt-susceptible tomato plants in a naturalistic soil-soak inoculation assay. The ΔnucA/B mutant was out-competed by the wild-type strain in planta and was less able to stunt root growth or colonize plant stems. Further, the double nuclease mutant could not escape from root border cells in vitro and was defective in attachment to pea roots. Taken together, these results demonstrate that extracellular DNases are novel virulence factors that help R. solanacearum successfully overcome plant defenses to infect plant roots and cause bacterial wilt disease. PMID:27336156

  20. Control of fractionation-area corrosion at SRC pilot plants

    SciTech Connect

    Keiser, J.R.; Judkins, R.R.; Baylor, V.B.; Canfield, D.R.; Barnett, W.P.

    1981-10-01

    Fractionating columns at the Fort Lewis, Washington, and Wilsonville, Alabama, Solvent Refined Coal pilot plants have experienced severe corrosion. This corrosion is most serious for materials exposed in the 230 to 250/sup 0/C (446 to 482/sup 0/F) range. Corrosion rates as high as 25 mm/year (1000 mils/year) on carbon steel and 6.4 mm/year (250 mils/year) on type 18-8 stainless steels have been observed. This corrosion problem has been studied at ORNL through exposure of coupons in the columns, analysis of failed components from the pilot plants, chemical analysis of liquids from the pilot plants, and operation of laboratory experiments. The in-plant exposure of coupons has shown that certain nickel-base alloys have adequate corrosion resistance for the environment. Chemical analyses of pilot plant liquids have shown that the presence of appreciable levels of water-soluble chloride is a necessary but not sufficient condition for these oils to be corrosive. By analysis of Fort Lewis and Wilpaw Shale (Kb), Fox Hills Sandstone (Kfh), and the Hell Creek formation (Khc). Anomaly No. 31 is over an area underlain by Recent alluvium (Qal).

  1. Status of the steam generator tube circumferential ODSCC degradation experienced at the Doel 4 plant

    SciTech Connect

    Roussel, G.

    1997-02-01

    Since the 1991 outage, the Doel Unit 4 nuclear power plant is known to be affected by circumferential outside diameter intergranular stress corrosion cracking at the hot leg tube expansion transition. Extensive non destructive examination inspections have shown the number of tubes affected by this problem as well as the size of the cracks to have been increasing for the three cycles up to 1993. As a result of the high percentage of tubes found non acceptable for continued service after the 1993 in-service inspection, about 1,700 mechanical sleeves were installed in the steam generators. During the 1994 outage, all the tubes sleeved during the 1993 outage were considered as potentially cracked to some extent at the upper hydraulic transition and were therefore not acceptable for continued service. They were subsequently repaired by laser welding. Furthermore all the tubes not sleeved during the 1993 outage were considered as not acceptable for continued service and were repaired by installing laser welded sleeves. During the 1995 outage, some unexpected degradation phenomena were evidenced in the sleeved tubes. This paper summarizes the status of the circumferential ODSCC experienced in the SG tubes of the Doel 4 plant as well as the other connected degradation phenomena.

  2. From start to finish: amino-terminal protein modifications as degradation signals in plants.

    PubMed

    Gibbs, Daniel J; Bailey, Mark; Tedds, Hannah M; Holdsworth, Michael J

    2016-09-01

    Contents 1188 I. 1188 II. 1189 III. 1190 IV. 1191 V. 1192 1192 References 1192 SUMMARY: The amino- (N-) terminus (Nt) of a protein can undergo a diverse array of co- and posttranslational modifications. Many of these create degradation signals (N-degrons) that mediate protein destruction via the N-end rule pathway of ubiquitin-mediated proteolysis. In plants, the N-end rule pathway has emerged as a major system for regulated control of protein stability. Nt-arginylation-dependent degradation regulates multiple growth, development and stress responses, and recently identified functions of Nt-acetylation can also be linked to effects on the in vivo half-lives of Nt-acetylated proteins. There is also increasing evidence that N-termini could act as important protein stability determinants in plastids. Here we review recent advances in our understanding of the relationship between the nature of protein N-termini, Nt-processing events and proteolysis in plants. PMID:27439310

  3. Plant development controls leaf area expansion in alfalfa plants competing for light

    PubMed Central

    Baldissera, Tiago Celso; Frak, Ela; Carvalho, Paulo Cesar de Faccio; Louarn, Gaëtan

    2014-01-01

    Background and Aims The growth of crops in a mixture is more variable and difficult to predict than that in pure stands. Light partitioning and crop leaf area expansion play prominent roles in explaining this variability. However, in many crops commonly grown in mixtures, including the forage species alfalfa, the sensitivity and relative importance of the physiological responses involved in the light modulation of leaf area expansion are still to be established. This study was designed to assess the relative sensitivity of primary shoot development, branching and individual leaf expansion in alfalfa in response to light availability. Methods Two experiments were carried out. The first studied isolated plants to assess the potential development of different shoot types and growth periods. The second consisted of manipulating the intensity of competition for light using a range of canopies in pure and mixed stands at two densities so as to evaluate the relative effects on shoot development, leaf growth, and plant and shoot demography. Key Results Shoot development in the absence of light competition was deterministic (constant phyllochrons of 32·5 °Cd and 48·2 °Cd for primary axes and branches, branching probability of 1, constant delay of 1·75 phyllochron before axillary bud burst) and identical irrespective of shoot type and growth/regrowth periods. During light competition experiments, changes in plant development explained most of the plant leaf area variations, with average leaf size contributing to a lesser extent. Branch development and the number of shoots per plant were the leaf area components most affected by light availability. Primary axis development and plant demography were only affected in situations of severe light competition. Conclusions Plant leaf area components differed with regard to their sensitivity to light competition. The potential shoot development model presented in this study could serve as a framework to integrate light responses

  4. Metatranscriptomic Analyses of Plant Cell Wall Polysaccharide Degradation by Microorganisms in the Cow Rumen

    PubMed Central

    Dai, Xin; Tian, Yan; Li, Jinting; Su, Xiaoyun; Wang, Xuewei; Zhao, Shengguo; Liu, Li; Luo, Yingfeng; Liu, Di; Zheng, Huajun; Wang, Jiaqi; Dong, Zhiyang

    2014-01-01

    The bovine rumen represents a highly specialized bioreactor where plant cell wall polysaccharides (PCWPs) are efficiently deconstructed via numerous enzymes produced by resident microorganisms. Although a large number of fibrolytic genes from rumen microorganisms have been identified, it remains unclear how they are expressed in a coordinated manner to efficiently degrade PCWPs. In this study, we performed a metatranscriptomic analysis of the rumen microbiomes of adult Holstein cows fed a fiber diet and obtained a total of 1,107,083 high-quality non-rRNA reads with an average length of 483 nucleotides. Transcripts encoding glycoside hydrolases (GHs) and carbohydrate binding modules (CBMs) accounted for ∼1% and ∼0.1% of the total non-rRNAs, respectively. The majority (∼98%) of the putative cellulases belonged to four GH families (i.e., GH5, GH9, GH45, and GH48) and were primarily synthesized by Ruminococcus and Fibrobacter. Notably, transcripts for GH48 cellobiohydrolases were relatively abundant compared to the abundance of transcripts for other cellulases. Two-thirds of the putative hemicellulases were of the GH10, GH11, and GH26 types and were produced by members of the genera Ruminococcus, Prevotella, and Fibrobacter. Most (∼82%) predicted oligosaccharide-degrading enzymes were GH1, GH2, GH3, and GH43 proteins and were from a diverse group of microorganisms. Transcripts for CBM10 and dockerin, key components of the cellulosome, were also relatively abundant. Our results provide metatranscriptomic evidence in support of the notion that members of the genera Ruminococcus, Fibrobacter, and Prevotella are predominant PCWP degraders and point to the significant contribution of GH48 cellobiohydrolases and cellulosome-like structures to efficient PCWP degradation in the cow rumen. PMID:25501482

  5. Jasmonate-inducible plant enzymes degrade essential amino acids in the herbivore midgut

    PubMed Central

    Chen, Hui; Wilkerson, Curtis G.; Kuchar, Jason A.; Phinney, Brett S.; Howe, Gregg A.

    2005-01-01

    The plant hormone jasmonic acid (JA) activates host defense responses against a broad spectrum of herbivores. Although it is well established that JA controls the expression of a large set of target genes in response to tissue damage, very few gene products have been shown to play a direct role in reducing herbivore performance. To test the hypothesis that JA-inducible proteins (JIPs) thwart attack by disrupting digestive processes in the insect gut, we used a MS-based approach to identify host proteins that accumulate in the midgut of Manduca sexta larvae reared on tomato (Solanum lycopersicum) plants. We show that two JIPs, arginase and threonine deaminase (TD), act in the M. sexta midgut to catabolize the essential amino acids Arg and Thr, respectively. Transgenic plants that overexpress arginase were more resistant to M. sexta larvae, and this effect was correlated with reduced levels of midgut Arg. We present evidence indicating that the ability of TD to degrade Thr in the midgut is enhanced by herbivore-induced proteolytic removal of the enzyme's C-terminal regulatory domain, which confers negative feedback regulation by isoleucine in planta. Our results demonstrate that the JA signaling pathway strongly influences the midgut protein content of phytophagous insects and support the hypothesis that catabolism of amino acids in the insect digestive tract by host enzymes plays a role in plant protection against herbivores. PMID:16357201

  6. Heterologous Expression of Plant Cell Wall Degrading Enzymes for Effective Production of Cellulosic Biofuels

    PubMed Central

    Jung, Sang-Kyu; Parisutham, Vinuselvi; Jeong, Seong Hun; Lee, Sung Kuk

    2012-01-01

    A major technical challenge in the cost-effective production of cellulosic biofuel is the need to lower the cost of plant cell wall degrading enzymes (PCDE), which is required for the production of sugars from biomass. Several competitive, low-cost technologies have been developed to produce PCDE in different host organisms such as Escherichia coli, Zymomonas mobilis, and plant. Selection of an ideal host organism is very important, because each host organism has its own unique features. Synthetic biology-aided tools enable heterologous expression of PCDE in recombinant E. coli or Z. mobilis and allow successful consolidated bioprocessing (CBP) in these microorganisms. In-planta expression provides an opportunity to simplify the process of enzyme production and plant biomass processing and leads to self-deconstruction of plant cell walls. Although the future of currently available technologies is difficult to predict, a complete and viable platform will most likely be available through the integration of the existing approaches with the development of breakthrough technologies. PMID:22911272

  7. Leucoagaricus gongylophorus Produces Diverse Enzymes for the Degradation of Recalcitrant Plant Polymers in Leaf-Cutter Ant Fungus Gardens

    PubMed Central

    Aylward, Frank O.; Burnum-Johnson, Kristin E.; Tringe, Susannah G.; Teiling, Clotilde; Tremmel, Daniel M.; Moeller, Joseph A.; Scott, Jarrod J.; Barry, Kerrie W.; Piehowski, Paul D.; Nicora, Carrie D.; Malfatti, Stephanie A.; Monroe, Matthew E.; Purvine, Samuel O.; Goodwin, Lynne A.; Smith, Richard D.; Weinstock, George M.; Gerardo, Nicole M.; Suen, Garret; Lipton, Mary S.

    2013-01-01

    Plants represent a large reservoir of organic carbon comprised primarily of recalcitrant polymers that most metazoans are unable to deconstruct. Many herbivores gain access to nutrients in this material indirectly by associating with microbial symbionts, and leaf-cutter ants are a paradigmatic example. These ants use fresh foliar biomass as manure to cultivate gardens composed primarily of Leucoagaricus gongylophorus, a basidiomycetous fungus that produces specialized hyphal swellings that serve as a food source for the host ant colony. Although leaf-cutter ants are conspicuous herbivores that contribute substantially to carbon turnover in Neotropical ecosystems, the process through which plant biomass is degraded in their fungus gardens is not well understood. Here we present the first draft genome of L. gongylophorus, and, using genomic and metaproteomic tools, we investigate its role in lignocellulose degradation in the gardens of both Atta cephalotes and Acromyrmex echinatior leaf-cutter ants. We show that L. gongylophorus produces a diversity of lignocellulases in ant gardens and is likely the primary driver of plant biomass degradation in these ecosystems. We also show that this fungus produces distinct sets of lignocellulases throughout the different stages of biomass degradation, including numerous cellulases and laccases that likely play an important role in lignocellulose degradation. Our study provides a detailed analysis of plant biomass degradation in leaf-cutter ant fungus gardens and insight into the enzymes underlying the symbiosis between these dominant herbivores and their obligate fungal cultivar. PMID:23584789

  8. Leucoagaricus gongylophorus Produces Diverse Enzymes for the Degradation of Recalcitrant Plant Polymers in Leaf-Cutter Ant Fungus Gardens

    SciTech Connect

    Aylward, Frank O.; Burnum-Johnson, Kristin E.; Tringe, Susannah G.; Teiling, Clotilde; Tremmel, Daniel; Moeller, Joseph; Scott, Jarrod J.; Barry, Kerrie W.; Piehowski, Paul D.; Nicora, Carrie D.; Malfatti, Stephanie; Monroe, Matthew E.; Purvine, Samuel O.; Goodwin, Lynne A.; Smith, Richard D.; Weinstock, George; Gerardo, Nicole; Suen, Garret; Lipton, Mary S.; Currie, Cameron R.

    2013-06-12

    Plants represent a large reservoir of organic carbon comprised largely of recalcitrant polymers that most metazoans are unable to deconstruct. Many herbivores gain access to nutrients in this material indirectly by associating with microbial symbionts, and leaf-cutter ants are a paradigmatic example. These ants use fresh foliar biomass as manure to cultivate fungus gardens composed primarily of Leucoagaricus gongylophorus, a basidiomycetous symbiont that produces specialized hyphal swellings that serve as a food source for the host ant colony. Although leaf-cutter ants are conspicuous herbivores that contribute substantially to carbon turnover in Neotropical ecosystems, the process through which plant biomass is degraded in their fungus gardens is not well understood. Here we present the first draft genome of L. gongylophorus, and using genomic, metaproteomic, and phylogenetic tools we investigate its role in lignocellulose degradation in the fungus gardens of both Atta cephalotes and Acromyrmex echinatior leaf-cutter ants. We show that L. gongylophorus produces a diversity of lignocellulases in fungus gardens, and is likely the primary driver of plant biomass degradation in these ecosystems. We also show that this fungus produces distinct sets of lignocellulases throughout the different stages of biomass degradation, including numerous cellulases and laccases that may be playing an important but previously uncharacterized role in lignocellulose degradation. Our study provides a comprehensive analysis of plant biomass degradation in leaf-cutter ant fungus gardens and provides insight into the molecular dynamics underlying the symbiosis between these dominant herbivores and their obligate fungal cultivar.

  9. [Simulated study of algal fatty acid degradation in hypoxia seawater-sediment interface along China coastal area].

    PubMed

    Sui, Wei-Wei; Ding, Hai-Bing; Yang, Gui-Peng; Lu, Xiao-Lan; Li, Wen-Juan; Sun, Li-Qun

    2013-11-01

    Series of laboratory incubation experiments were conducted to simulate degradation of organic matter in sediment-seawater interface in hypoxia enviroments along China coastal area. Under four different redox conditions (oxygen saturation: 100%, 50%, 25% and 0%), degradations of seveal biomarkers originated from Skeletonema costatum, a typical red tide alage along China coastal area were tracked. By analyzing concentrations of four fatty acid biomarkers [14:0, 16:0, 16:1(7) and 20:5] obtained at various sampling time, results showed that their concentrations decreased significantly after 2-3 weeks' incubation. Then, their concentrations changed very slowly or very little. However, degradation of the four fatty acids varied dramatically in different incubation systems. Fatty acids 14:0, 16:1(7) and 20:5 were degraded completely in all incubation systems after two-month incubation, but 25% to 35% of 16:0 was reserved in the systems. Based on multi-G model, degradations of the four fatty acids were quantively described. The results indicated that all four fatty acids had fast-degraded and slow-degraded fractions. Their degradation rate constants (k(av)) ranged from 0.079 to 0.84 d(-1). The fastest degradation of 14:0 and 16:1 (7) occurred under 25% oxygen concentrations. For these two compounds, in the fastest degradation system, their k(av), values were 2.3 folds and 1.7 folds higher than those in the slowest degradation system [50% oxygen saturation for 14:0 and 100% oxygen saturation for 16:1(7)] respectively. The 16:0 was degraded fastest under the anoxic condition and slowest under the 50% oxygen saturation. The ratio of the two k(av)s was 2.1. The k(av)s of 20:5 had a positive relationship with oxygen saturations. Results of this study suggested that besides oxgen saturations, structure and features of organic compounds, roles of microbe in the envrioments and etc. might affect degradations of fatty acids in S. costatum in hypoxia sediment-seawater interface

  10. 26+ Year Old Photovoltaic Power Plant: Degradation and Reliability Evaluation of Crystalline Silicon Modules -- South Array

    NASA Astrophysics Data System (ADS)

    Olakonu, Kolapo

    As the use of photovoltaic (PV) modules in large power plants continues to increase globally, more studies on degradation, reliability, failure modes, and mechanisms of field aged modules are needed to predict module life expectancy based on accelerated lifetime testing of PV modules. In this work, a 26+ year old PV power plant in Phoenix, Arizona has been evaluated for performance, reliability, and durability. The PV power plant, called Solar One, is owned and operated by John F. Long's homeowners association. It is a 200 kW dc, standard test conditions (STC) rated power plant comprised of 4000 PV modules or frameless laminates, in 100 panel groups (rated at 175 kW ac). The power plant is made of two center-tapped bipolar arrays, the north array and the south array. Due to a limited time frame to execute this large project, this work was performed by two masters students (Jonathan Belmont and Kolapo Olakonu) and the test results are presented in two masters theses. This thesis presents the results obtained on the south array and the other thesis presents the results obtained on the north array. Each of these two arrays is made of four sub arrays, the east sub arrays (positive and negative polarities) and the west sub arrays (positive and negative polarities), making up eight sub arrays. The evaluation and analyses of the power plant included in this thesis consists of: visual inspection, electrical performance measurements, and infrared thermography. A possible presence of potential induced degradation (PID) due to potential difference between ground and strings was also investigated. Some installation practices were also studied and found to contribute to the power loss observed in this investigation. The power output measured in 2011 for all eight sub arrays at STC is approximately 76 kWdc and represents a power loss of 62% (from 200 kW to 76 kW) over 26+ years. The 2011 measured power output for the four south sub arrays at STC is 39 kWdc and represents a power

  11. Hydrocarbon degradation and plant colonization of selected bacterial strains isolated from the rhizsophere and plant interior of Italian ryegrass and Birdsfoot trefoil

    NASA Astrophysics Data System (ADS)

    Sohail, Y.; Andria, V.; Reichenauer, T. G.; Sessitsch, A.

    2009-04-01

    Hydrocarbon-degrading strains were isolated from the rhizosphere, root and shoot interior of Italian ryegrass (Lolium multiflorum var. Taurus), Birdsfoot trefoil (Lotus corniculatus var. Leo) grown in a soil contaminated with petroleum oil. Strains were tested regarding their phylogeny and their degradation efficiency. The most efficient strains were tested regarding their suitability to be applied for phytoremediation of diesel oils. Sterilized and non-sterilized agricultural soil, with and with out compost, were spiked with diesel and used for planting Italian ryegrass and birdsfoot trefoil. Four selected strains with high degradation activities, derived from the rhizosphere and plant interior, were selected for individual inoculation. Plants were harvested at flowering stage and plant biomass and hydrocarbon degradation was determined. Furthermore, it was investigated to which extent the inoculant strains were able to survive and colonize plants. Microbial community structures were analysed by 16S rRNA and alkB gene analysis. Results showed efficient colonization by the inoculant strains and improved degradation by the application of compost combined with inoculation as well as on microbial community structures will be presented.

  12. Cometabolic Degradation of Trichloroethene by Rhodococcus sp. Strain L4 Immobilized on Plant Materials Rich in Essential Oils▿ †

    PubMed Central

    Suttinun, Oramas; Müller, Rudolf; Luepromchai, Ekawan

    2010-01-01

    The cometabolic degradation of trichloroethene (TCE) by Rhodococcus sp. L4 was limited by the loss of enzyme activity during TCE transformation. This problem was overcome by repeated addition of inducing substrates, such as cumene, limonene, or cumin aldehyde, to the cells. Alternatively, Rhodococcus sp. L4 was immobilized on plant materials which contain those inducers in their essential oils. Cumin seeds were the most suitable immobilizing material, and the immobilized cells tolerated up to 68 μM TCE and degraded TCE continuously. The activity of immobilized cells, which had been inactivated partially during TCE degradation, could be reactivated by incubation in mineral salts medium without TCE. These findings demonstrate that immobilization of Rhodococcus sp. L4 on plant materials rich in essential oils is a promising method for efficient cometabolic degradation of TCE. PMID:20472723

  13. Biological effect of radiation-degraded alginate on flower plants in tissue culture.

    PubMed

    Le, Q Luan; Nguyen, Q Hien; Nagasawa, Naotsugu; Kume, Tamikazu; Yoshii, Fumio; Nakanishi, Tomoko M

    2003-12-01

    Alginate with a weight-average molecular mass (Mw) of approx. 9.04 x 10(5) Da was irradiated at 10-200 kGy in 4% (w/v) aqueous solution. The degraded alginate product was used to study its effectiveness as a growth promoter for plants in tissue culture. Alginate irradiated at 75 kGy with an Mw of approx. 1.43 x 10(4) Da had the highest positive effect in the growth of flower plants, namely limonium, lisianthus and chrysanthemum. Treatment of plants with irradiated alginate at concentrations of 30-200 mg/l increased the shoot multiplication rate from 17.5 to 40.5% compared with control. In plantlet culture, 100 mg/l irradiated alginate supplementation enhanced shoot height (9.7-23.2%), root length (9.7-39.4%) and fresh biomass (8.1-19.4%) of chrysanthemum, lisianthus and limonium compared with that of the untreated control. The survival ratios of the transferred flower plantlets treated with irradiated alginate were almost the same as the control value under greenhouse conditions. However, better growth was attained for the treated plantlets. PMID:12901723

  14. Multitrait plant growth promoting (PGP) rhizobacterial isolates from Brassica juncea rhizosphere : Keratin degradation and growth promotion.

    PubMed

    Anwar, Mohmmad Shahbaz; Siddique, Mohammad Tahir; Verma, Amit; Rao, Yalaga Rama; Nailwal, Tapan; Ansari, Mohammad; Pande, Veena

    2014-01-01

    Plant growth promoting (PGP) rhizobacteria, a beneficial microbe colonizing plant roots, enhanced crop productivity and offers an attractive way to replace chemical fertilizers, pesticides, and supplements. The keratinous waste which comprises feathers, hairs, nails, skin and wool creates problem of solid waste management due to presence of highly recalcitrant keratin. The multi traits rhizobacteria effective to remove both keratine from the environment by producing keratinase enzyme and to eradicate the chemical fertilizer by providing different PGP activity is novel achievement. In the present study, the effective PM2 strain of PGPR was isolated from rhizospheric soil of mustard (Brassica juncea) field, Pantnagar and they were identified on the basis of different biochemical tests as belonging to Bacillus genera. Different plant growth promoting activity, feather degradation and keratinolytic activity was performed and found very effective toward all the parameters. Furthermore, the efficient strain PM2 was identified on the basis of 16s rRNA sequencing and confirmed as Bacillus cereus. The strain PM2 might be used efficiently for keratinous waste management and PGP activity. Therefore, the present study suggests that Bacillus cereus have multi traits activity which extremely useful for different PGP activity and biotechnological process involving keratin hydrolysis, feather biodegradation or in the leather industry. PMID:24778758

  15. Effect of radiation-degraded chitosan on plants stressed with vanadium

    NASA Astrophysics Data System (ADS)

    Xuan Tham, Le; Nagasawa, Naotsugu; Matsuhashi, Shinpei; Ishioka, Noriko S.; Ito, Takehito; Kume, Tamikazu

    2001-05-01

    The toxicity of vanadium (V) and the effect of chitosan has been investigated on soybean, rice, wheat and barley. Wheat and barley were sensitive to V than rice and soybean but all seedlings of these plants were damaged at 2.5 μg/ml V (in VCl 3). These damages were reduced by application of radiation-degraded chitosan. The recovery of growth and reduction of V levels in seedlings were obtained by the treatments with 10-100 μg/ml chitosan irradiated at 70-200 kGy of γ-rays in 1% solution. The reductions of V and Fe contents in plants were due to the ability of chitosan to form chelate complexes with metals in solution. The result of BAS analysis shows that the absorption and transportation of 48V to the leaf from root was suppressed with irradiated chitosan. Therefore, it can be concluded that chitosan irradiated at suitable doses (ca. 100 kGy) is effective as plant growth promoters and heavy metal eliminators in crop production.

  16. Invisible floral larcenies: microbial communities degrade floral nectar of bumble bee-pollinated plants.

    PubMed

    Herrera, Carlos M; García, Isabel M; Pérez, Ricardo

    2008-09-01

    The ecology of nectarivorous microbial communities remains virtually unknown, which precludes elucidating whether these organisms play some role in plant-pollinator mutualisms beyond minor commensalism. We simultaneously assessed microbial abundance and nectar composition at the individual nectary level in flowers of three southern Spanish bumble bee-pollinated plants (Helleborus foetidus, Aquilegia vulgaris, and Aquilegia pyrenaica cazorlensis). Yeasts were frequent and abundant in nectar of all species, and variation in yeast density was correlated with drastic changes in nectar sugar concentration and composition. Yeast communities built up in nectar from early to late floral stages, at which time all nectaries contained yeasts, often at densities between 10(4) and 10(5) cells/mm3. Total sugar concentration and percentage sucrose declined, and percentage fructose increased, with increasing density of yeast cells in nectar. Among-nectary variation in microbial density accounted for 65% (H. foetidus and A. vulgaris) and 35% (A. p. cazorlensis) of intraspecific variance in nectar sugar composition, and 60% (H. foetidus) and 38% (A. vulgaris) of variance in nectar concentration. Our results provide compelling evidence that nectar microbial communities can have detrimental effects on plants and/or pollinators via extensive nectar degradation and also call for a more careful interpretation of nectar traits in the future, if uncontrolled for yeasts. PMID:18831156

  17. Sphingomonas taxi, Isolated from Cucurbita pepo, Proves to Be a DDE-Degrading and Plant Growth-Promoting Strain.

    PubMed

    Eevers, Nele; Van Hamme, Jonathan D; Bottos, Eric M; Weyens, Nele; Vangronsveld, Jaco

    2015-01-01

    The draft genome of Sphingomonas taxi, a strain of the Sphingomonadaceae isolated from Cucurbita pepo root tissue, is presented. This Gram-negative bacterium shows 2,2-bis(p-chlorophenyl)-1,1-dichloroethylene (DDE)-degrading potential and plant growth-promoting capacities. An analysis of its 3.9-Mb draft genome will enhance the understanding of DDE-degradation pathways and phytoremediation applications for DDE-contaminated soils. PMID:25977415

  18. Draft Genome Sequence of Methylobacterium radiotolerans, a DDE-Degrading and Plant Growth-Promoting Strain Isolated from Cucurbita pepo

    PubMed Central

    Eevers, Nele; Van Hamme, Jonathan D.; Bottos, Eric M.; Weyens, Nele

    2015-01-01

    We announce the draft genome of Methylobacterium radiotolerans, a Gram-negative bacterium isolated from Cucurbita pepo roots. This strain shows 2,2-bis(p-chlorophenyl)-1,1-dichloroethylene (DDE)-degrading potential and plant growth-promoting capacities. Analyses of its 6.8-Mb genome will improve our understanding of DDE-degradation pathways and aid in the deployment of phytoremediation technologies to remediate DDE-contaminated soils. PMID:25977414

  19. Sphingomonas taxi, Isolated from Cucurbita pepo, Proves to Be a DDE-Degrading and Plant Growth-Promoting Strain

    PubMed Central

    Eevers, Nele; Van Hamme, Jonathan D.; Bottos, Eric M.; Weyens, Nele

    2015-01-01

    The draft genome of Sphingomonas taxi, a strain of the Sphingomonadaceae isolated from Cucurbita pepo root tissue, is presented. This Gram-negative bacterium shows 2,2-bis(p-chlorophenyl)-1,1-dichloroethylene (DDE)-degrading potential and plant growth-promoting capacities. An analysis of its 3.9-Mb draft genome will enhance the understanding of DDE-degradation pathways and phytoremediation applications for DDE-contaminated soils. PMID:25977415

  20. Draft Genome Sequence of Enterobacter aerogenes, a DDE-Degrading and Plant Growth-Promoting Strain Isolated from Cucurbita pepo

    PubMed Central

    Eevers, Nele; Van Hamme, Jonathan D.; Bottos, Eric M.; Weyens, Nele

    2015-01-01

    We report here the draft genome of Enterobacter aerogenes, a Gram-negative bacterium of the Enterobacteriaceae isolated from Cucurbita pepo root tissue. This bacterium shows 2,2-bis(p-chlorophenyl)-1,1-dichloroethylene (DDE)-degrading potential and plant growth-promoting capacity. An analysis of its 4.5-Mb draft genome will enhance the understanding of DDE degradation pathways and phytoremediation applications for DDE-contaminated soils. PMID:25883299

  1. Review of Recent Aging-Related Degradation Occurrences of Structures and Passive Components in U.S. Nuclear Power Plants

    SciTech Connect

    Nie,J.; Braverman, J.; Hofmayer, C.; Choun, Y.-S.; Kim, M.K.; Choi, I.-K.

    2009-04-02

    The Korea Atomic Energy Research Institute (KAERI) and Brookhaven National Laboratory (BNL) are collaborating to develop seismic capability evaluation technology for degraded structures and passive components (SPCs) under a multi-year research agreement. To better understand the status and characteristics of degradation of SPCs in nuclear power plants (NPPs), the first step in this multi-year research effort was to identify and evaluate degradation occurrences of SPCs in U.S. NPPs. This was performed by reviewing recent publicly available information sources to identify and evaluate the characteristics of degradation occurrences and then comparing the information to the observations in the past. Ten categories of SPCs that are applicable to Korean NPPs were identified, comprising of anchorage, concrete, containment, exchanger, filter, piping system, reactor pressure vessel, structural steel, tank, and vessel. Software tools were developed to expedite the review process. Results from this review effort were compared to previous data in the literature to characterize the overall degradation trends.

  2. Hydrological character of the soil of a degraded area: comparison of analysis physical, chemical and floristic vegetational

    NASA Astrophysics Data System (ADS)

    Manfredi, Paolo; Cassinari, Chiara; Giupponi, Luca; Sichel, Giorgio Maria; Trevisan, Marco

    2013-04-01

    Extractor (Piastre di Richards): were carried out from water retention curves and calculated the values of percolating water (water circulation) and the useful water (maximum available water) were also determined physical and chemical parameters that most affect the hydrological characteristics of the soil such as texture, organic carbon, salinity and total limestone. The same soils were subjected to a floristic and vegetational analysis with relative comparison of the biological spectrum of the site with the spectra of other territories taken in comparison (Piacenza, Emilia Romagna, northern Italy, southern Italy). The 40% of the plants of the area is represented by Therophytes, species that are adapted to live in environments disturbed by human activities or climate. The high frequency of this species does not seem motivated either by the ombrothermic diagram elaborated with the help of the climatic data of the meteorological station of Piacenza, which was observed for a brief period the appearance of water deficit, neither linked to the interference from human activities which turns out to be low. Keywords: degraded soils, hydrological character, floristic vegetation analysis

  3. Multidomain, Surface Layer-associated Glycoside Hydrolases Contribute to Plant Polysaccharide Degradation by Caldicellulosiruptor Species.

    PubMed

    Conway, Jonathan M; Pierce, William S; Le, Jaycee H; Harper, George W; Wright, John H; Tucker, Allyson L; Zurawski, Jeffrey V; Lee, Laura L; Blumer-Schuette, Sara E; Kelly, Robert M

    2016-03-25

    The genome of the extremely thermophilic bacterium Caldicellulosiruptor kronotskyensisencodes 19 surface layer (S-layer) homology (SLH) domain-containing proteins, the most in any Caldicellulosiruptorspecies genome sequenced to date. These SLH proteins include five glycoside hydrolases (GHs) and one polysaccharide lyase, the genes for which were transcribed at high levels during growth on plant biomass. The largest GH identified so far in this genus, Calkro_0111 (2,435 amino acids), is completely unique toC. kronotskyensisand contains SLH domains. Calkro_0111 was produced recombinantly inEscherichia colias two pieces, containing the GH16 and GH55 domains, respectively, as well as putative binding and spacer domains. These displayed endo- and exoglucanase activity on the β-1,3-1,6-glucan laminarin. A series of additional truncation mutants of Calkro_0111 revealed the essential architectural features required for catalytic function. Calkro_0402, another of the SLH domain GHs inC. kronotskyensis, when produced inE. coli, was active on a variety of xylans and β-glucans. Unlike Calkro_0111, Calkro_0402 is highly conserved in the genus Caldicellulosiruptorand among other biomass-degrading Firmicutes but missing from Caldicellulosiruptor bescii As such, the gene encoding Calkro_0402 was inserted into the C. besciigenome, creating a mutant strain with its S-layer extensively decorated with Calkro_0402. This strain consequently degraded xylans more extensively than wild-typeC. bescii The results here provide new insights into the architecture and role of SLH domain GHs and demonstrate that hemicellulose degradation can be enhanced through non-native SLH domain GHs engineered into the genomes of Caldicellulosiruptorspecies. PMID:26814128

  4. Characterization of Radiation Fields in Biological Shields of Nuclear Power Plants for Assessing Concrete Degradation

    SciTech Connect

    Remec, Igor; Rosseel, Thomas M; Field, Kevin G; Pape, Yann Le

    2016-01-01

    Life extensions of nuclear power plants to 60 and potentially 80 years of operation have renewed interest in long-term material degradation. One material being considered is concrete with a particular focus on radiation-induced effects. Based on the projected neutron fluence (E > 0.1 MeV) values in the concrete biological shields of the US PWR fleet and the available data on radiation effects on concrete, some decrease in mechanical properties of concrete cannot be ruled out during extended operation beyond 60 years. An expansion of the irradiated concrete database and a reliable determination of relevant neutron fluence energy cutoff value are necessary to assure reliable risk assessment for NPPs extended operation.

  5. Enhancement of micropollutant degradation at the outlet of small wastewater treatment plants.

    PubMed

    Rossi, Luca; Queloz, Pierre; Brovelli, Alessandro; Margot, Jonas; Barry, D A

    2013-01-01

    The aim of this work was to evaluate low-cost and easy-to-operate engineering solutions that can be added as a polishing step to small wastewater treatment plants to reduce the micropollutant load to water bodies. The proposed design combines a sand filter/constructed wetland with additional and more advanced treatment technologies (UV degradation, enhanced adsorption to the solid phase, e.g., an engineered substrate) to increase the elimination of recalcitrant compounds. The removal of five micropollutants with different physico-chemical characteristics (three pharmaceuticals: diclofenac, carbamazepine, sulfamethoxazole, one pesticide: mecoprop, and one corrosion inhibitor: benzotriazole) was studied to evaluate the feasibility of the proposed system. Separate batch experiments were conducted to assess the removal efficiency of UV degradation and adsorption. The efficiency of each individual process was substance-specific. No process was effective on all the compounds tested, although elimination rates over 80% using light expanded clay aggregate (an engineered material) were observed. A laboratory-scale flow-through setup was used to evaluate interactions when removal processes were combined. Four of the studied compounds were partially eliminated, with poor removal of the fifth (benzotriazole). The energy requirements for a field-scale installation were estimated to be the same order of magnitude as those of ozonation and powdered activated carbon treatments. PMID:23484055

  6. Enhancement of Micropollutant Degradation at the Outlet of Small Wastewater Treatment Plants

    PubMed Central

    Rossi, Luca; Queloz, Pierre; Brovelli, Alessandro; Margot, Jonas; Barry, D. A.

    2013-01-01

    The aim of this work was to evaluate low-cost and easy-to-operate engineering solutions that can be added as a polishing step to small wastewater treatment plants to reduce the micropollutant load to water bodies. The proposed design combines a sand filter/constructed wetland with additional and more advanced treatment technologies (UV degradation, enhanced adsorption to the solid phase, e.g., an engineered substrate) to increase the elimination of recalcitrant compounds. The removal of five micropollutants with different physico-chemical characteristics (three pharmaceuticals: diclofenac, carbamazepine, sulfamethoxazole, one pesticide: mecoprop, and one corrosion inhibitor: benzotriazole) was studied to evaluate the feasibility of the proposed system. Separate batch experiments were conducted to assess the removal efficiency of UV degradation and adsorption. The efficiency of each individual process was substance-specific. No process was effective on all the compounds tested, although elimination rates over 80% using light expanded clay aggregate (an engineered material) were observed. A laboratory-scale flow-through setup was used to evaluate interactions when removal processes were combined. Four of the studied compounds were partially eliminated, with poor removal of the fifth (benzotriazole). The energy requirements for a field-scale installation were estimated to be the same order of magnitude as those of ozonation and powdered activated carbon treatments. PMID:23484055

  7. Functional microbial diversity dynamics in common effluent treatment plants of South Gujarat and hydrocarbon degradation.

    PubMed

    Zaveri, Purvi; Munshi, Nasreen; Vaidya, Alok; Jha, Sanjay; Kumar, G Naresh

    2015-06-01

    Common effluent treatment plants (CETPs) of South Gujarat region, India, process wastewater generated by more than 2500 industries because of the nonfeasibility of processing at the individual industrial unit. This study assessed functional microbial diversity in wastewater samples of CETPs over a geological belt using Ecoplate®, isolation of the most abundant bacteria, and screening for hydrocarbon degradation. The high evenness (EPielou) values (0.9) in almost all samples indicated a highly even community structure. Principal component analysis of carbon source utilization showed a cluster of all inlet samples except E1 and another cluster of all outlet samples; aeration tank community samples were dispersed. In spite of the high richness found in microbial communities, 60 morphologically similar organisms were observed and isolated; 46 out of them were subjected to amplified ribosomal DNA restriction analysis with MboI, HaeIII, and TaqI enzyme, followed by UPGMA clustering. In screening the most abundant bacteria from each cluster, one of the cultures showed a high potential for hydrocarbon degradation and was identified as Pseudomonas citronellolis by 16S rDNA sequencing. Because of its highly adapted inherent nature, this bacterium may help augment the conventional procedure in wastewater treatment and efficiently decrease the organic load. PMID:25925663

  8. Isolation and characterization of mesophilic, oxalate-degrading Streptomyces from plant rhizosphere and forest soils.

    PubMed

    Sahin, Nurettin

    2004-10-01

    The present work was aimed at the isolation of additional new pure cultures of oxalate-degrading Streptomyces and its preliminary characterization for further work in the field of oxalate metabolism and taxonomic studies. Mesophilic, oxalate-degrading Streptomyces were enriched and isolated from plant rhizosphere and forest soil samples. Strains were examined for cultural, morphological (spore chain morphology, spore mass colour, diffusible and melanin pigment production), physiological (antibiosis, growth in the presence of inhibitory compounds, assimilation of organic acids and enzyme substrates) and chemotaxonomic characters (cellular lipid components and diagnostic cell-wall diamino acid). The taxonomic data obtained were analysed by using the simple matching (SSM) and Jaccard (Sj) coefficients, clustering was achieved using the UPGMA algorithm. All strains were able to utilize sodium-, potassium-, calcium- and ammonium-oxalate salts. Based on the results of numerical taxonomy, isolates were grouped into five cluster groups with a > or =70% S(SM) similarity level. Streptomyces rochei was the most common of the cluster groups, with a Willcox probability of P > 0.8. Streptomyces antibioticus, S. anulatus, S. fulvissimus, S. halstedii and S. violaceusniger are newly reported as oxalate-utilizing Streptomyces. PMID:15448922

  9. Assessment of litter degradation in medicinal plants subjected to ultraviolet-B radiation.

    PubMed

    Agrawal, S B; Kumari, Rima

    2013-07-01

    Litter decomposition is an important component of global carbon budget. Elevated influx of ultraviolet-B radiation (UV-B) as a consequence of depletion of stratospheric ozone (O3) layer may affect litter decomposition directly or/modifying the plant tissue quality. Chemical composition of plant can affect litter decomposition. In the present study, three important medicinal plant species i.e. Acorus calamus, Ocimum sanctum and Cymbopogon citratus were exposed to two levels of supplemental UV-B (sUV and sUV,) during the growth period and examined the changes in leaf quality and degradation of leaf litters. The sUV, treatment (+3.6 kJ m(-2) d(-1)) increased the rate of decomposition by 45% and 31% respectively; in leaf litters from O. sanctum and C. citratus, while no significant effect was noticed in A. calamus leaf litter. Higher accumulation of sclerenchymatous tissue around vascular bundles and increased concentrations of total phenols by 39 mg g(-1) probably lowered the decomposition rate; finding k value: 0.0049 g g(-1) d(-1) in leaf litters of A. calamus. The C/N ratio was increased by 14% at sUV2 in C. citratus, whereas in O. sanctum it decreased by 13.6% after treatment. Results of the present experiment illustrates that firstly UV-B can modify the decomposition rate of leaf litter of test plant species, secondly it can alter the tissue chemistry particularly leaf phenolics, N and P concentrations strongly and thus affecting the decay rate and thirdly UV-B effects on decay rate and leaf chemistry is species specific. PMID:24640251

  10. Environmental assessment for the salvage/demolition of 200 West Area, 200 East Area, and 300 Area steam plants

    SciTech Connect

    1996-10-01

    This environmental assessment has been prepared to assess potential environmental impacts associated with the US Department of Energy`s proposed action: the salvage/demolition of the 200 West Area, 200 East Area, and 300 Area Steam Plants and steam distribution piping. Impact information will be used by the US Department of Energy, Richland Operations Office Manager, to determine if the proposed action is a major federal action significantly affecting the quality of the human environment. If the proposed action is determined to be major and significant, an environmental impact statement will be prepared. If the proposed action is determined not to be major and significant, a Finding of No Significant Impact (FONSI) will be issued and the action can proceed. The proposed action involves the salvage and demolition of the 200 West Area, 200 East Are, and 300 Area steam plants and their associated steam distribution piping, equipment, and ancillary facilities. Activities include the salvaging and recycling of all materials, wastes, and equipment where feasible, with waste minimization efforts utilized.

  11. Novel ideas for maximising dew collection to aid plant establishment to combat desertification and restore degraded dry and arid lands

    NASA Astrophysics Data System (ADS)

    Kotzen, Benz

    2014-05-01

    This paper focuses on the potential of dew to provide water to plants and potentially to people as well in remote and difficult to reach areas where rainfall and underground water cannot be harvested. The combat of desertification and the restoration of degraded and desertified dry and arid lands has never been more urgent. A key practical component of this strategy is the restoration of habitat with planting. But for habitat and planting to survive there needs to be an adequate supply of water. In most cases providing water to the plant's roots is vital. In some areas where habitats have been destroyed, sufficient water is immediately available, for example through seasonal rainfall, or it can be harvested to concentrate adequate supplies of water to the roots. However, in arid and hyper arid areas, as well as in some dryland areas, a consistent and adequate supply of water cannot be provided by any conventional proven method. Thus, as the need to combat desertification and to restore desertified dry and arid land increases, so the need to find novel methods of establishing and maintaining planting and thus habitat increases. In more traditional land management scenarios this can be achieved through manipulating landform on a micro and macro scale, for example, by creating catchments, thereby collecting precipitation and directing it to the plants. Where this cannot be done, other means of water supply are usually required. Bainbridge (2007) and others have shown that supplying water to plants is possible through a number of traditional methods, for example, using clay pots. But most of these techniques require an introduced source of water, for example, obtained through water harvesting methods or by delivering water to site in tanks and by water bowser. This can work but requires continuous manpower. It is expensive and can be physically prohibitive in areas where access is difficult and/or remote. The concept of using dew to supply water in drylands is not new

  12. Stable hydrogen and carbon isotope ratios of methoxyl groups during plant litter degradation.

    PubMed

    Anhäuser, Tobias; Greule, Markus; Zech, Michael; Kalbitz, Karsten; McRoberts, Colin; Keppler, Frank

    2015-01-01

    Stable hydrogen and carbon isotope ratios of methoxyl groups (δ(2)Hmethoxyl and δ(13)Cmethoxyl values, respectively) in plant material have been shown to possess characteristic signatures. These isotopic signatures can be used for a variety of applications such as constraining the geographical origin and authenticity of biomaterials. Recently, it has also been suggested that δ(2)Hmethoxyl values of sedimentary organic matter of geological archives might serve as a palaeoclimate/-hydrology proxy. However, deposited organic matter is subject to both biotic and abiotic degradation processes, and therefore an evaluation of their potential impact on the δ(2)Hmethoxyl and δ(13)Cmethoxyl values would allow more reliable interpretations of both isotopic signatures. Here, we investigated this potential influence by exposing foliar litter of five different tree species (Sycamore maple, Mountain ash, European beech, Norway spruce and Scots pine) to natural degradation. The foliar litter was sampled at nine intervals over a 27-month period, and the bulk methoxyl content as well as the δ(2)Hmethoxyl and δ(13)Cmethoxyl values were measured. At the end of the experiment, a loss of the bulk methoxyl in the range of ∼40-70% was measured. Linear regression analysis showed no dependence of δ(2)Hmethoxyl values with methoxyl content for four out of five foliar litter samples studied (R(2) in the range of 0.03 and 0.36, p > .05). On the contrary, the δ(13)Cmethoxyl values showed significant linear correlations for the great majority of the foliar litter samples (R(2) in the range of 0.51 and 0.73, p < .05). The litter species with the greatest methoxyl loss (Mountain ash, Scots pine and Norway spruce) showed the strongest (13)C enrichment, by up to ∼5‰. Since δ(2)Hmethoxyl shows no systematic overall change during the course of degradation, we propose that there is considerable potential for its use as a palaeoclimate proxy for a wide range of geological

  13. Degradation of the Plant Defense Signal Salicylic Acid Protects Ralstonia solanacearum from Toxicity and Enhances Virulence on Tobacco

    PubMed Central

    Lowe-Power, Tiffany M.; Jacobs, Jonathan M.; Ailloud, Florent; Fochs, Brianna; Prior, Philippe

    2016-01-01

    ABSTRACT Plants use the signaling molecule salicylic acid (SA) to trigger defenses against diverse pathogens, including the bacterial wilt pathogen Ralstonia solanacearum. SA can also inhibit microbial growth. Most sequenced strains of the heterogeneous R. solanacearum species complex can degrade SA via gentisic acid to pyruvate and fumarate. R. solanacearum strain GMI1000 expresses this SA degradation pathway during tomato pathogenesis. Transcriptional analysis revealed that subinhibitory SA levels induced expression of the SA degradation pathway, toxin efflux pumps, and some general stress responses. Interestingly, SA treatment repressed expression of virulence factors, including the type III secretion system, suggesting that this pathogen may suppress virulence functions when stressed. A GMI1000 mutant lacking SA degradation activity was much more susceptible to SA toxicity but retained the wild-type colonization ability and virulence on tomato. This may be because SA is less important than gentisic acid in tomato defense signaling. However, another host, tobacco, responds strongly to SA. To test the hypothesis that SA degradation contributes to virulence on tobacco, we measured the effect of adding this pathway to the tobacco-pathogenic R. solanacearum strain K60, which lacks SA degradation genes. Ectopic addition of the GMI1000 SA degradation locus, including adjacent genes encoding two porins and a LysR-type transcriptional regulator, significantly increased the virulence of strain K60 on tobacco. Together, these results suggest that R. solanacearum degrades plant SA to protect itself from inhibitory levels of this compound and also to enhance its virulence on plant hosts like tobacco that use SA as a defense signal molecule. PMID:27329752

  14. Erosion and Land Degradation in Mediterranean areas as a adaptive response to Mediterranean agriiculture

    NASA Astrophysics Data System (ADS)

    Imeson, Anton

    2014-05-01

    The motivation for this session is the statement or claim that Mediterranean areas are sensitive to erosion and desertification. One result of the LEDDRA Approach, which is applying the Complex Adaptive (CAS)paradigm at study sites in Mediterranean Spain, Greece and Italy is that there is just a single socio-environmental system in which land degradation is being caused by the actions of people and the Mediterranean soils have co-eveolved with people under the influence of fire and grazing. They are therefore resilient, and this was demonstrated by Naveh and Thornes. Also the Medalus field sites showed very low rates of erosion. With examples from different Mediterranean landscapes, it is considered that Mediterranean landscapes went through an initial phase of being sensitive to erosion which ended up with the original soils before ploughing or deforestation, being eroded from most of the areas, In some places these are found. LEDDRA The Leddra approach is to consider different states which are separated by transitions. The first state is that of the deforestaion and destruction of the forest that took place 6000 10000 years ago, in the Eastern and Northern Mediterranean, and 2000 to 4,000 years ago in large areas of the Western Mediterranean, and 100 to 400 years ago in California. Australia, New Zealand and Chile. The second state involves appropriating and settling the land from indigenous people and introducing cattle and sheep and Mediterranean crops. The current state of desertification is one in which erosion occurs because of the use of specific cultivation methods and subsidies for irrigating and producing crops outside of their range. In the Mediterranean landscape State, such as found near Santiago in Chile and in Crete, society gains many cultural benefits from grazing. However, the consequences of this are that the whole ecosystem is maintained in an arid state, so that areas in Crete receiving 800-1100 mm rainfall have a semi arid vegetation, instead

  15. Evolution of vegetation activity on well-vegetated and degraded areas in the central Spanish Pyrenees, using multitemporal Landsat imagery

    NASA Astrophysics Data System (ADS)

    Alatorre, Luis Carlos; Beguería, Santaigo; Lana-Renault, Noemí

    2010-05-01

    The temporal evolution of vegetation activity on various land cover classes in the Spanish Pyrenees was analyzed. The study area is located at 620-2,149 m altitude approximately 23 km north of the Barasona Reservoir, is an integrated badlands landscape orientated northwest-southeast and developed on Eocene marls. The objectives of this study were: i) to obtain time series of vegetation activity during two contrasting periods of the growth cycle (early spring and the end of summer) for various land cover classes, including both well-vegetated and degraded areas (badlands and erosion risk areas); ii) to determine the extent by which climate controls vegetation activity in the various land cover classes, and to define temporal trends; and, iii) to analyze the spatial distribution of trends in vegetation activity on erosion risk areas, as indicators of recovery and degradation, and to quantify the effects of various topographical factors on such trends. Two time series of the normalized difference vegetation index (NDVI) were used, corresponding to March (early spring) and August (the end of summer). The series were generated from Landsat TM and Landsat ETM+ images for the period 1984-2007. An increase in the NDVI in March was found for vegetated areas, and the opposite trend was found in both March and August for degraded areas (badlands and erosion risk areas). The rise in minimum temperature during the study period appears to be the most important factor explaining the increased NDVI in the vegetated areas. In degraded areas, no climatic or topographic variable was associated with the negative trend in the NDVI, which may be related to erosion processes taking place in these regions.

  16. Novel ideas for maximising dew collection to aid plant establishment to combat desertification and restore degraded dry and arid lands

    NASA Astrophysics Data System (ADS)

    Kotzen, Benz

    2014-05-01

    This paper focuses on the potential of dew to provide water to plants and potentially to people as well in remote and difficult to reach areas where rainfall and underground water cannot be harvested. The combat of desertification and the restoration of degraded and desertified dry and arid lands has never been more urgent. A key practical component of this strategy is the restoration of habitat with planting. But for habitat and planting to survive there needs to be an adequate supply of water. In most cases providing water to the plant's roots is vital. In some areas where habitats have been destroyed, sufficient water is immediately available, for example through seasonal rainfall, or it can be harvested to concentrate adequate supplies of water to the roots. However, in arid and hyper arid areas, as well as in some dryland areas, a consistent and adequate supply of water cannot be provided by any conventional proven method. Thus, as the need to combat desertification and to restore desertified dry and arid land increases, so the need to find novel methods of establishing and maintaining planting and thus habitat increases. In more traditional land management scenarios this can be achieved through manipulating landform on a micro and macro scale, for example, by creating catchments, thereby collecting precipitation and directing it to the plants. Where this cannot be done, other means of water supply are usually required. Bainbridge (2007) and others have shown that supplying water to plants is possible through a number of traditional methods, for example, using clay pots. But most of these techniques require an introduced source of water, for example, obtained through water harvesting methods or by delivering water to site in tanks and by water bowser. This can work but requires continuous manpower. It is expensive and can be physically prohibitive in areas where access is difficult and/or remote. The concept of using dew to supply water in drylands is not new

  17. Soil quality degradation processes along a deforestation chronosequence in the Ziwuling Area, China

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Accelerated erosion caused by deforestation and soil degradation has become the primary factor limiting sustainable utilization of soil resources on the Loess Plateau of Northwestern China. We studied the physical, chemical, and microbiological processes of soil degradation along a chronosequence o...

  18. Implementation of research results to prevent land degradation in viticultural areas

    NASA Astrophysics Data System (ADS)

    Marqués Pérez, Maria Jose; Bienes, Ramon; de Benito, Alejandro; Velasco, Ana

    2013-04-01

    This study shows the lack of interest of land users to establish contact with scientific institutions and their reluctance to change their traditional way to manage their soils. It is conducted in Madrid and Castilla La Mancha, Spain, where the production of wine is an important source of income. The basic research was dealing with sustainable land management in sloping vineyards to prevent soil degradation. The usual reduced tillage practice in the area is compared with different cover grasses in the inter-rows of vines. The results demonstrate that these managements are able to increase soil organic matter, improve infiltration, reduce runoff and soil loss and increase soil aggregate stability. Nevertheless a decrease in production is noticed in some permanent cover treatments. A survey to know the feasibility of implementation of this sustainable land management was conducted. Less than 5% of vine growers coming to cellars and cooperatives were willing to be interviewed. Finally 64 vine growers answered a questionnaire regarding different aspects of their environmental concerns, age, land management practices and economic situation. The majority of respondents (82%) are worried about erosion problems in their sloping vineyards. They were informed about the results of the abovementioned project but only 32% of them would change the cultivation by grasses in the inter-rows. The respondents were not old (72% below 50 years old), and the agriculture was not their first activity (69% had other different sources of income). It is remarkable that they have some misunderstandings and lack of knowledge in questions regarding soil conservation. Only 3% of them receive some kind of economic aid from the institutions to avoid land degradation. This could be related to the small or medium size of their lands as 87% of them have plots smaller than 50 ha. The extension services and policy makers have to face this situation to achieve the proper implementation of scientific

  19. From Arabidopsis to cereal crops: Conservation of chloroplast protein degradation by autophagy indicates its fundamental role in plant productivity

    PubMed Central

    Izumi, Masanori; Hidema, Jun; Ishida, Hiroyuki

    2015-01-01

    Autophagy is an evolutionarily conserved process leading to the degradation of intracellular components in eukaryotes, which is important for nutrient recycling especially in response to starvation conditions. Nutrient recycling is an essential process that underpins productivity in crop plants, such that remobilized nitrogen derived from older organs supports the formation of new organs or grain-filling within a plant. We extended our understanding of autophagy in a model plant, Arabidopsis thaliana, to an important cereal, rice (Oryza sativa). Through analysis of transgenic rice plants stably expressing fluorescent marker proteins for autophagy or chloroplast stroma, we revealed that chloroplast proteins are partially degraded in the vacuole via Rubisco-containing bodies (RCBs), a type of autophagosomes containing stroma. We further reported evidence that the RCB pathway functions during natural leaf senescence to facilitate subsequent nitrogen remobilization into newly expanding leaves. Thus, our recent studies establish the importance of autophagy in biomass production of cereals. PMID:26440746

  20. Coevolution and Life Cycle Specialization of Plant Cell Wall Degrading Enzymes in a Hemibiotrophic Pathogen

    PubMed Central

    Brunner, Patrick C.; Torriani, Stefano F.F.; Croll, Daniel; Stukenbrock, Eva H.; McDonald, Bruce A.

    2013-01-01

    Zymoseptoria tritici is an important fungal pathogen on wheat that originated in the Fertile Crescent. Its closely related sister species Z. pseudotritici and Z. ardabiliae infect wild grasses in the same region. This recently emerged host–pathogen system provides a rare opportunity to investigate the evolutionary processes shaping the genome of an emerging pathogen. Here, we investigate genetic signatures in plant cell wall degrading enzymes (PCWDEs) that are likely affected by or driving coevolution in plant-pathogen systems. We hypothesize four main evolutionary scenarios and combine comparative genomics, transcriptomics, and selection analyses to assign the majority of PCWDEs in Z. tritici to one of these scenarios. We found widespread differential transcription among different members of the same gene family, challenging the idea of functional redundancy and suggesting instead that specialized enzymatic activity occurs during different stages of the pathogen life cycle. We also find that natural selection has significantly affected at least 19 of the 48 identified PCWDEs. The majority of genes showed signatures of purifying selection, typical for the scenario of conserved substrate optimization. However, six genes showed diversifying selection that could be attributed to either host adaptation or host evasion. This study provides a powerful framework to better understand the roles played by different members of multigene families and to determine which genes are the most appropriate targets for wet laboratory experimentation, for example, to elucidate enzymatic function during relevant phases of a pathogen’s life cycle. PMID:23515261

  1. Characterization of Radiation Fields in Biological Shields of Nuclear Power Plants for Assessing Concrete Degradation

    NASA Astrophysics Data System (ADS)

    Remec, Igor; Rosseel, Thomas M.; Field, Kevin G.; Le Pape, Yann

    2016-02-01

    Life extensions of nuclear power plants to 60 and potentially 80 years of operation have renewed interest in long-term material degradation. One material being considered is concrete, with a particular focus on radiation-induced effects. Based on the projected neutron fluence values (E > 0.1 MeV) in the concrete biological shields of the US pressurized water reactor fleet and the available data on radiation effects on concrete, some decrease in mechanical properties of concrete cannot be ruled out during extended operation beyond 60 years. An expansion of the irradiated concrete database and a reliable determination of relevant neutron fluence energy cutoff value are necessary to ensure reliable risk assessment for extended operation of nuclear power plants. Notice: This manuscript has been authored by UT-Battelle, LLC, under contract DE-AC0500OR22725 with the US Department of Energy. The United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a nonexclusive, paid-up, irrevocable, worldwide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes.

  2. Can salt marsh plants influence levels and distribution of DDTs in estuarine areas?

    NASA Astrophysics Data System (ADS)

    Carvalho, Pedro N.; Rodrigues, Pedro Nuno R.; Evangelista, Rafael; Basto, M. Clara P.; Vasconcelos, M. Teresa S. D.

    2011-07-01

    Sediments are depositories of toxic substances such as organochlorine pesticides and there is a global need for their removal in contaminated environments. Studies that combine contaminated sediments and phytoremediation are relatively recent and their number has been increasing. This work aimed to investigate whether salt marsh plants (sea club-rush Scirpus maritimus, sea rush Juncus maritimus and sea purslane Halimione portulacoides) can favor DDT and metabolites remediation in estuarine environment. For this purpose the levels of DDT, DDE and DDD were compared in vegetated and non-vegetated sediments from an estuary in the North of Portugal ( in-situ study) and from another in the South of Portugal ( ex-situ study). Results obtained both in the in-situ study, involving S. maritimus and J. maritimus, and in the ex-situ study, involving H. portulacoides, indicated that these plants did not have a significant role in DDTs removal and/or degradation. Therefore, it seems that the tested plants cannot influence levels and distribution of DDTs in estuarine areas.

  3. Photocatalytic degradation of oil industry hydrocarbons models at laboratory and at pilot-plant scale

    SciTech Connect

    Vargas, Ronald; Nunez, Oswaldo

    2010-02-15

    Photodegradation/mineralization (TiO{sub 2}/UV Light) of the hydrocarbons: p-nitrophenol (PNP), naphthalene (NP) and dibenzothiophene (DBT) at three different reactors: batch bench reactor (BBR), tubular bench reactor (TBR) and tubular pilot-plant (TPP) were kinetically monitored at pH = 3, 6 and 10, and the results compared using normalized UV light exposition times. The results fit the Langmuir-Hinshelwood (LH) model; therefore, LH adsorption equilibrium constants (K) and apparent rate constants (k) are reported as well as the apparent pseudo-first-order rate constants, k{sub obs}{sup '} = kK/(1 + Kc{sub r}). The batch bench reactor is the most selective reactor toward compound and pH changes in which the reactivity order is: NP > DBT > PNP, however, the catalyst adsorption (K) order is: DBT > NP > PNP at the three pH used but NP has the highest k values. The tubular pilot-plant (TPP) is the most efficient of the three reactors tested. Compound and pH photodegradation/mineralization selectivity is partially lost at the pilot plant where DBT and NP reaches ca. 90% mineralization at the pH used, meanwhile, PNP reaches only 40%. The real time, in which these mineralization occur are: 180 min for PNP and 60 min for NP and DBT. The mineralization results at the TPP indicate that for the three compounds, the rate limiting step is the same as the degradation one. So that, there is not any stable intermediate that may accumulate during the photocatalytic treatment. (author)

  4. Assessment and restoring soil functionality in degraded areas of organic vineyards. The preliminary results of the ReSolVe project in Italy

    NASA Astrophysics Data System (ADS)

    Priori, Simone; Agnelli, Alessandro; Castaldini, Maurizio; D'Avino, Lorenzo; D'Errico, Giada; Gagnarli, Elena; Giudi, Silvia; Goggioli, Donatella; Lagomarsino, Alessandra; Landi, Silvia; Leprini, Marco; Pellegrini, Sergio; Perria, Rita; Puccioni, Sergio; Simoni, Sauro; Storchi, Paolo; Valboa, Giuseppe; Zombardo, Alessandra; Costantini, Edoardo

    2016-04-01

    homogeneous patterns within the experimental plots. Nematode abundance, taxa richness and maturity (MI) and plant parasitic (PPI) indices were higher in non-degraded than degraded areas, but differences were not significant. Grapevines in degraded areas of both farms showed less vegetative vigour and significantly lower values in the SPAD colour index. The yield and the weight of the grape bunches and berries were greater in the not degraded. The grapes of degraded areas at harvest had instead a sugar content significantly higher (on average +2.5°Brix). The restoration techniques and the monitoring methodologies developed and tested during the ReSolVe project will be described in specific final guidelines. The restoration techniques will be accessible for all the European farmers and will be low cost and environmental-friendly. A protocol of analyses and measurements between the all partners will allow an effective and comparable monitoring of vineyard ecosystemic functioning in European countries. Keywords: organic, viticulture, soil functionality, biodiversity, soil management Aknowledgements: Financial support for this project is provided by funding bodies within the FP7 ERA-Net CORE Organic Plus, and cofunds from the European Commission.

  5. Genetic structure of Pilosocereus gounellei (Cactaceae) as revealed by AFLP marker to guide proposals for improvement and restoration of degraded areas in Caatinga biome.

    PubMed

    Monteiro, E R; Strioto, D K; Meirelles, A C S; Mangolin, C A; Machado, M F P S

    2015-01-01

    Amplified fragment length polymorphism (AFLP) analysis was used to evaluate DNA polymorphism in Pilosocereus gounellei with the aim of differentiating samples grown in different Brazilian semiarid regions. Seven primer pairs were used to amplify 703 AFLP markers, of which 700 (99.21%) markers were polymorphic. The percentage of polymorphic markers ranged from 95.3% for the primer combination E-AAG/M-CTT to 100% for E-ACC/M-CAT, E-ACC/M-CAA, E-AGC/M-CAG, E-ACT/M-CTA, and E-AGG/M-CTG. The largest number of informative markers (126) was detected using the primer combination E-AAC/M-CTA. Polymorphism of the amplified DNA fragments ranged from 72.55% (in sample from Piauí State) to 82.79% (in samples from Rio Grande Norte State), with an average of 75.39%. Despite the high genetic diversity of AFLP markers in xiquexique, analysis using the STRUCTURE software identified relatively homogeneous clusters of xiquexique from the same location, indicating a differentiation at the molecular level, among the plant samples from different regions of the Caatinga biome. The AFLP methodology identified genetically homogeneous and contrasting plants, as well as plants from different regions with common DNA markers. Seeds from such plants can be used for further propagation of plants for establishment of biodiversity conservation units and restoration of degraded areas of the Caatinga biome. PMID:26681043

  6. Degradation of plant cuticles in soils: impact on formation and sorptive ability of humin-mineral matrices.

    PubMed

    Olshansky, Yaniv; Polubesova, Tamara; Chefetz, Benny

    2015-05-01

    Plant cuticles are important precursors for soil organic matter, in particular for soil humin, which is considered an efficient sorbent for organic pollutants. In this study, we examined degradation and transformation of cuticles isolated from fruit and leaves in loamy sand and sandy clay loessial arid brown soils. We then studied sorption of phenanthrene and carbamazepine to humin-mineral matrices isolated from the incubated soils. Low degradation (22%) was observed for agave cuticle in a sandy clay soil system, whereas high degradation (68-78%) was obtained for agave cuticle in a loamy sand soil system and for loamy sand and sandy clay soils amended with tomato cuticle. During incubation, most of the residual organic matter was accumulated in the humin fraction. Sorption of phenanthrene was significantly higher for humin-mineral matrices obtained from soils incubated with plant cuticles as compared with soils without cuticle application. Sorption of carbamazepine to humin-mineral matrices was not affected by cuticle residues. Cooperative sorption of carbamazepine on humin-mineral matrices isolated from sandy clay soil is suggested. Sorption-desorption hysteresis of both phenanthrene and carbamazepine was lower for humin-mineral matrices obtained from soils incubated with plant cuticles as compared with nonamended soils. Our results show that cuticle composition significantly affects the rate and extent of cuticle degradation in soils and that plant cuticle application influences sorption and desorption of polar and nonpolar pollutants by humin-mineral matrices. PMID:26024265

  7. Colonization on Root Surface by a Phenanthrene-Degrading Endophytic Bacterium and Its Application for Reducing Plant Phenanthrene Contamination

    PubMed Central

    Liu, Juan; Liu, Shuang; Sun, Kai; Sheng, Yuehui; Gu, Yujun; Gao, Yanzheng

    2014-01-01

    A phenanthrene-degrading endophytic bacterium, Pn2, was isolated from Alopecurus aequalis Sobol grown in soils contaminated with polycyclic aromatic hydrocarbons (PAHs). Based on morphology, physiological characteristics and the 16S rRNA gene sequence, it was identified as Massilia sp. Strain Pn2 could degrade more than 95% of the phenanthrene (150 mg·L−1) in a minimal salts medium (MSM) within 48 hours at an initial pH of 7.0 and a temperature of 30°C. Pn2 could grow well on the MSM plates with a series of other PAHs, including naphthalene, acenaphthene, anthracene and pyrene, and degrade them to different degrees. Pn2 could also colonize the root surface of ryegrass (Lolium multiflorum Lam), invade its internal root tissues and translocate into the plant shoot. When treated with the endophyte Pn2 under hydroponic growth conditions with 2 mg·L−1 of phenanthrene in the Hoagland solution, the phenanthrene concentrations in ryegrass roots and shoots were reduced by 54% and 57%, respectively, compared with the endophyte-free treatment. Strain Pn2 could be a novel and useful bacterial resource for eliminating plant PAH contamination in polluted environments by degrading the PAHs inside plants. Furthermore, we provide new perspectives on the control of the plant uptake of PAHs via endophytic bacteria. PMID:25247301

  8. Relationship soil-water-plant after the dry season in dry Mediterranean areas

    NASA Astrophysics Data System (ADS)

    Hueso-González, P.; Jiménez-Donaire, V.; Ruiz-Sinoga, J. D.

    2012-04-01

    Preliminary studies have determined the existence of a pluviometric gradient around Mediterranean system, which varies from 240 to 1 100 mm mean annual rainfall. This gradient has an incidence in the physical, chemical and hydrological properties in soils with the same litology. Empiric results conclude that humid eco-geomorphological systems are controlled by biotic processes, whereas in arid eco-geomorphological systems, are abiotic factors which have more importance in soil degradation processes. The study area of the present work is located in Málaga (Andalusia, Spain), in the southern part of the Natural Park "Sierra Tejeda, Almijara y Alhama". There, the mean annual temperature is around 18 °C and the mean rainfall is 650 mm. Predominant vegetation corresponds to the termomediterranean serie Smilaci Mauritanicae-Querceto Rotundifoliae Sigmetum, typical of basic soils. The aim of this study is to analyse the immediate hydrological response of the soil under different vegetation covers, through the analysis of certain properties, all this, under subhumid ombrotipe. A random choice of ten representative plants has been done. These plants, with different sizes, were located in the same Southern slope. The soil samples were taken right beside the plant log, and also within a distance of 0.4 to 1 metre from them, depending on the plant size. The sampling was carried out between the end of the dry season and the beginning of the wet one, after a 20% of the mean annual rainfall had rained. The physical, chemical and hydrological analyzes -both in the field and the laboratory- were: exchange-base, total carbon, cation exchange capacity, soil infiltration capacity, salt content, hydrophobia, organic matter, soil organic carbon, total nitrogen, wetting profile in bared soil, wetting profile under vegetation cover (shrubland), and p.H. Literature reveals that rainfall affects significantly the edafogenetic factors, regarding the pluviometric gradient level. In the

  9. Ruderal plants in remaining Cerrado areas: floristic survey, origin and mycorrhization

    NASA Astrophysics Data System (ADS)

    José Neto, Maria; de Cássia Brassaloti Otsubo, Helena; Luciene Maltoni, Kátia; Rodrigues Cassiolato, Ana Maria

    2015-04-01

    The urbanization process creates new ecosystems that harbor flora which has specialized in living in anthropogenically altered environments, since the advent of agriculture and urbanization. Plant specialization in new ecosystems has been due to accelerated population growth and extensive occupied spaces on the planet surface. This study was looking at the floristic survey and origin, as well as arbuscular mycorrhization of ruderal plants, in remaining Cerrado areas in the city of Três Lagoas-MS, Brazil. It was also to expand knowledge about native and introduced vegetation in anthropogenic environments. The survey was conducted for a year. From all species ruderal plants founded, plants from 49 species were collected with the purpose of this study and report the occurrence or not of AM colonization, by classifying root colonization, of the species as: very high; high; medium; low and absent when presented a index of colonization> 80%, 79-50%, 49-20%, 19-1% and 0%, respectively. Two hundred sixty-six species, distributed into 53 botanical families were found. The flora of Três Lagoas-MS is composed of native and exotic plants (82.72% from the Americas and 17.28% from the Old World and Australia). There were 220 species native to the America's, but the largest amount (60.45%) were Brazil native growing plants. Smaller percentage of this (28.63%) was found to come from the cerrado, which indicates that the ruderal vegetation was well represented by native species. Of the 49 species chosen for verification of arbuscular mycorrhizal colonization, 27 exhibited very high colonization; two were high; two were medium; eleven were low and seven species showed no mycorrhizal colonization, leading to the conclusion that most ruderal plants showed mycorrhizal colonization. The soil fertility, for both area, were considered higher than the typical cerrado, and by the average number of AMF spores (152 per 100 g of dry soil-1) may not even be considered degraded. This urban

  10. Species-area relationships in Mediterranean-climate plant communities

    USGS Publications Warehouse

    Keeley, J.E.; Fotheringham, C.J.

    2003-01-01

    Aim: To determine the best-fit model of species-area relationships for Mediterranean-type plant communities and evaluate how community structure affects these species-area models. Location: Data were collected from California shrublands and woodlands and compared with literature reports for other Mediterranean-climate regions. Methods: The number of species was recorded from 1, 100 and 1000 m2 nested plots. Best fit to the power model or exponential model was determined by comparing adjusted r2 values from the least squares regression, pattern of residuals, homoscedasticity across scales, and semi-log slopes at 1-100 m2 and 100-1000 m2. Dominance-diversity curves were tested for fit to the lognormal model, MacArthur's broken stick model, and the geometric and harmonic series. Results: Early successional Western Australia and California shrublands represented the extremes and provide an interesting contrast as the exponential model was the best fit for the former, and the power model for the latter, despite similar total species richness. We hypothesize that structural differences in these communities account for the different species-area curves and are tied to patterns of dominance, equitability and life form distribution. Dominance-diversity relationships for Western Australian heathlands exhibited a close fit to MacArthur's broken stick model, indicating more equitable distribution of species. In contrast, Californian shrublands, both postfire and mature stands, were best fit by the geometric model indicating strong dominance and many minor subordinate species. These regions differ in life form distribution, with annuals being a major component of diversity in early successional Californian shrublands although they are largely lacking in mature stands. Both young and old Australian heathlands are dominated by perennials, and annuals are largely absent. Inherent in all of these ecosystems is cyclical disequilibrium caused by periodic fires. The potential for

  11. Accelerating the degradation of green plant waste with chemical decomposition agents.

    PubMed

    Kejun, Sun; Juntao, Zhang; Ying, Chen; Zongwen, Liao; Lin, Ruan; Cong, Liu

    2011-10-01

    Degradation of green plant waste is often difficult, and excess maturity times are typically required. In this study, we used lignin, cellulose and hemicellulose assays; scanning electron microscopy; infrared spectrum analysis and X-ray diffraction analysis to investigate the effects of chemical decomposition agents on the lignocellulose content of green plant waste, its structure and major functional groups and the mechanism of accelerated degradation. Our results showed that adding chemical decomposition agents to Ficus microcarpa var. pusillifolia sawdust reduced the contents of lignin by 0.53%-11.48% and the contents of cellulose by 2.86%-7.71%, and increased the contents of hemicellulose by 2.92%-33.63% after 24 h. With increasing quantities of alkaline residue and sodium lignosulphonate, the lignin content decreased. Scanning electron microscopy showed that, after F. microcarpa var. pusillifolia sawdust was treated with chemical decomposition agents, lignocellulose tube wall thickness increased significantlyIncreases of 29.41%, 3.53% and 34.71% were observed after treatment with NaOH, alkaline residue and sodium lignosulphonate, respectively. Infrared spectroscopy showed that CO and aromatic skeleton stretching absorption peaks were weakened and the C-H vibrational absorption peak from out-of-plane in positions 2 and 6 (S units) (890-900 cm(-1)) was strengthened after F. microcarpa var. pusillifolia sawdust was treated with chemical decomposition agents, indicating a reduction in lignin content. Several absorption peaks [i.e., C-H deformations (asymmetry in methyl groups, -CH(3)- and -CH(2)-) (1450-1460 cm(-1)); Aliphatic C-H stretching in methyl and phenol OH (1370-1380 cm(-1)); CO stretching (cellulose and hemicellulose) (1040-1060 cm(-1))] that indicate the presence of a chemical bond between lignin and cellulose was reduced, indicating that the chemical bond between lignin and cellulose had been partially broken. X-ray diffraction analysis showed that Na

  12. STRUCTURAL PERFORMANCE OF DEGRADED REINFORCED CONCRETE MEMBERS.

    SciTech Connect

    Braverman, J.I.; Miller, C.A.; Ellingwood, B.R.; Naus, D.J.; Hofmayer, C.H.; Bezler, P.; Chang, T.Y.

    2001-03-22

    This paper describes the results of a study to evaluate, in probabilistic terms, the effects of age-related degradation on the structural performance of reinforced concrete members at nuclear power plants. The paper focuses on degradation of reinforced concrete flexural members and shear walls due to the loss of steel reinforcing area and loss of concrete area (cracking/spalling). Loss of steel area is typically caused by corrosion while cracking and spalling can be caused by corrosion of reinforcing steel, freeze-thaw, or aggressive chemical attack. Structural performance in the presence of uncertainties is depicted by a fragility (or conditional probability of failure). The effects of degradation on the fragility of reinforced concrete members are calculated to assess the potential significance of various levels of degradation. The fragility modeling procedures applied to degraded concrete members can be used to assess the effects of degradation on plant risk and can lead to the development of probability-based degradation acceptance limits.

  13. [Changes of plant community structure and species diversity in degradation process of Shouqu wetland of Yellow River].

    PubMed

    Hou, Yuan; Guo, Zheng-gang; Long, Rui-jun

    2009-01-01

    Shouqu wetland of Yellow River plays important roles in the ecological security of the lower reaches of Yellow River. By the method of replacing time series with spatial sequence, an investigation was made on the changes of plant species diversity in the process of the natural degradation of the wetland. A comparison was also made to study the effects of artificial drainage on the plant species diversity. The results indicated that in the degradation process of Shouqu wetland, i.e., from swamp to swamp meadow, to alpine meadow, and to steppe meadow, the dominant plants followed the pattern of hygrophytes being gradually replaced by mesophytes and xerophytes, richness index and diversity index were increasing while dominance index was decreasing, and evenness index decreased first and increased then. The species diversity had an overall increasing trend. After artificial drainage, the proportion of poisonous weeds in the plant community increased, resulting in the increase of richness index and diversity index, slight decrease of evenness index and dominance index, and gradual decrease of Sorensen index. Artificial drainage made the habitat drying, which provided a chance for some mesophytes to invade, resulting in the increase of diversity index and richness index and the decrease of evenness index. On the whole, artificial drainage increased the plant diversity in the community, but the increase accompanied with increasing poisonous weeds, and thus, led the Shouqu wetland degraded into weed type wetland. PMID:19449561

  14. Effects of Alien Plants on Ecosystem Structure and Functioning and Implications for Restoration: Insights from Three Degraded Sites in South African Fynbos

    NASA Astrophysics Data System (ADS)

    Gaertner, Mirijam; Richardson, David M.; Privett, Sean D. J.

    2011-07-01

    We investigated the type and extent of degradation at three sites on the Agulhas Plain, South Africa: an old field dominated by the alien grass Pennisetum clandestinum Pers . (kikuyu), an abandoned Eucalyptus plantation, and a natural fynbos community invaded by nitrogen fixing—Australian Acacia species. These forms of degradation are representative of many areas in the region. By identifying the nature and degree of ecosystem degradation we aimed to determine appropriate strategies for restoration in this biodiversity hotspot. Vegetation surveys were conducted at degraded sites and carefully selected reference sites. Soil-stored propagule seed banks and macro- and micro-soil nutrients were determined. Species richness, diversity and native cover under Eucalyptus were extremely low compared to the reference site and alterations of the soil nutrients were the most severe. The cover of indigenous species under Acacia did not differ significantly from that in reference sites, but species richness was lower under Acacia and soils were considerably enriched. Native species richness was much lower in the kikuyu site, but soil nutrient status was similar to the reference site. Removal of the alien species alone may be sufficient to re-initiate ecosystem recovery at the kikuyu site, whereas active restoration is required to restore functioning ecosystems dominated by native species in the Acacia thicket and the Eucalyptus plantation. To restore native plant communities we suggest burning, mulching with sawdust and sowing of native species.

  15. Plant-associated bacteria degrade defense chemicals and reduce their adverse effects on an insect defoliator.

    PubMed

    Mason, Charles J; Couture, John J; Raffa, Kenneth F

    2014-07-01

    Phytophagous insects must contend with numerous secondary defense compounds that can adversely affect their growth and development. The gypsy moth (Lymantria dispar) is a polyphagous herbivore that encounters an extensive range of hosts and chemicals. We used this folivore and a primary component of aspen chemical defenses, namely, phenolic glycosides, to investigate if bacteria detoxify phytochemicals and benefit larvae. We conducted insect bioassays using bacteria enriched from environmental samples, analyses of the microbial community in the midguts of bioassay larvae, and in vitro phenolic glycoside metabolism assays. Inoculation with bacteria enhanced larval growth in the presence, but not absence, of phenolic glycosides in the artificial diet. This effect of bacteria on growth was observed only in larvae administered bacteria from aspen foliage. The resulting midgut community composition varied among the bacterial treatments. When phenolic glycosides were included in diet, the composition of midguts in larvae fed aspen bacteria was significantly altered. Phenolic glycosides increased population responses by bacteria that we found able to metabolize these compounds in liquid growth cultures. Several aspects of these results suggest that vectoring or pairwise symbiosis models are inadequate for understanding microbial mediation of plant-herbivore interactions in some systems. First, bacteria that most benefitted larvae were initially foliar residents, suggesting that toxin-degrading abilities of phyllosphere inhabitants indirectly benefit herbivores upon ingestion. Second, assays with single bacteria did not confer the benefits to larvae obtained with consortia, suggesting multi- and inter-microbial interactions are also involved. Our results show that bacteria mediate insect interactions with plant defenses but that these interactions are community specific and highly complex. PMID:24798201

  16. Material Aging and Degradation Detection and Remaining Life Assessment for Plant Life Management

    SciTech Connect

    Ramuhalli, Pradeep; Henager, Charles H.; Griffin, Jeffrey W.; Meyer, Ryan M.; Coble, Jamie B.; Pitman, Stan G.; Bond, Leonard J.

    2012-12-31

    One of the major factors that may impact long term operations is structural material degradation, Detecting materials degradation, estimating the remaining useful life (RUL) of the component, and determining approaches to mitigating the degradation are important from the perspective of long term operations. In this study, multiple nondestructive measurement and monitoring methods were evaluated for their ability to assess the material degradation state. Metrics quantifying the level of damage from these measurements were defined, and evaluated for their ability to provide estimates of remaining life of the component. An example of estimating the RUL from nondestructive measurements of material degradation condition is provided.

  17. Assessment of the insulation degradation of cables used in nuclear power plants

    NASA Astrophysics Data System (ADS)

    Bartoníc̆ek, B.; Hnát, V.; Plac̆ek, V.

    1999-05-01

    Cable insulating materials are usually, during their operational lifetime, exposed to a high number of various deteriorative enviromental effects resulting in their degradation. In the case of cables used in the nuclear power plant (NPP) hermetic zone these factors consist predominantly of long-term irradiation (at rather low dose rates, in the presence of oxygen) and enhanced temperature. Hence, all cables assigned for use in NPP have to be qualified for use under such severe conditions. However, not only the initial qualification but also monitoring of the actual state of the installed cables in regular intervals is now recommended. Monitoring of the actual state of the cable insulation and the prediction of their residual service life (i.e., the on-going qualification) consist of the measurement of the properties that are directly proportional to the functionality of the cables (usually the elongation at break is used as the critical parameter). For the cables installed in the NPP hermetic zone a method based on the measurement of the thermo-oxidative stability by the differential scanning calorimetry has been developed.

  18. Using tobacco plants as biomonitors of contaminated norm areas.

    PubMed

    Máté, B; Horváth, M; Somlai, J; Kovács, T

    2013-03-01

    One of the largest biomonitoring tasks is the assessing and environment monitoring of radiological wastes produced by mining. Po-210 and Pb-210 are easy to mobilise even in a weak acidic medium and as we know the biological behaviour and accumulation capacity of tobacco, this could be a suitable option for biomonitoring. During our work the Pb-210 and Po-210 concentration values of tobacco parts and soil samples originating from a Hungarian remediated uranium mine site were determined. The source preparation was spontaneous deposition following combined acidic leaching with a Po-209 tracer; the detection was carried out with a semiconductor ('PIPS') detector alpha-spectrometer. According to the results for the tobacco plant parts and soil samples, secular equilibrium could be found between the Pb-210 and Po-210 isotopes, and the isotope content of the lower leaves of the tobacco plants was in correlation with the isotope concentration of the soil; therefore, the measurement of the activity concentration is suitable for tracing smaller levels of washing out. The Po-210 activity concentration values of tobacco (average: 15.5 ± 3.6 Bq kg(-1)) and soil (average: 60.1 ± 15.2 Bq kg(-1)) samples originating from the area investigated compared with samples from another part of Hungary, Balatonalmádi (tobacco: 12.5 ± 1.0 Bq kg(-1), soil: 57.0 ± 4.7 Bq kg(-1)), do not show significant radionuclide migration. PMID:23295854

  19. Measuring and modelling plant area index in beech stands.

    PubMed

    Holst, T; Hauser, S; Kirchgässner, A; Matzarakis, A; Mayer, H; Schindler, D

    2004-05-01

    For some beech ( Fagus sylvatica L.) stands with different stand densities the plant area index (PAI) was measured by means of a Licor LAI-2000 plant canopy analyser. The stands are located on the slopes of a valley in south-west Germany and had been treated by different types of silvicultural management (heavy shelterwood felling, light shelterwood felling, control plot). The analyser was used (a) to investigate the light conditions on plots of the same thinning regime, (b) to quantify the differences between the different treatments and (c) to obtain absolute values of PAI for interdisciplinary research. PAI was measured at three different phenological stages (leafless, leaf-unfolding and fully leafed season in 2000) and was found to be about 5.2 for the fully developed canopy on the control plots, 3.2 on the light fellings and about 2.0 for the heavy fellings. In the leafless period PAI was between 1.1 (control) and 0.4 (heavy felling). Measurements made in summer 2000 and summer 2002 were compared, and showed an increase of PAI, especially on the thinned plots. Measurements of photosynthetically active radiation (PAR) above and below the canopy in combination with measured PAI were used to apply Beer's Law of radiation extinction to calculate the extinction coefficient k for different sky conditions and for the different growing seasons on the control plots. The extinction coefficient k for the beech stands was found to be between 0.99 and 1.39 in the leafless period, 0.62 to 0.91 during leaf unfolding and between 0.68 and 0.83 in the fully leafed period. Using PAR measurements and the k values obtained, the annual cycle of PAI was modelled inverting Beer's Law. PMID:14750004

  20. Ralstonia solanacearum Type III Effector RipAY Is a Glutathione-Degrading Enzyme That Is Activated by Plant Cytosolic Thioredoxins and Suppresses Plant Immunity

    PubMed Central

    Hatanaka, Tadashi; Nakano, Masahito; Oda, Kenji

    2016-01-01

    ABSTRACT The plant pathogen Ralstonia solanacearum uses a large repertoire of type III effector proteins to succeed in infection. To clarify the function of effector proteins in host eukaryote cells, we expressed effectors in yeast cells and identified seven effector proteins that interfere with yeast growth. One of the effector proteins, RipAY, was found to share homology with the ChaC family proteins that function as γ-glutamyl cyclotransferases, which degrade glutathione (GSH), a tripeptide that plays important roles in the plant immune system. RipAY significantly inhibited yeast growth and simultaneously induced rapid GSH depletion when expressed in yeast cells. The in vitro GSH degradation activity of RipAY is specifically activated by eukaryotic factors in the yeast and plant extracts. Biochemical purification of the yeast protein identified that RipAY is activated by thioredoxin TRX2. On the other hand, RipAY was not activated by bacterial thioredoxins. Interestingly, RipAY was activated by plant h-type thioredoxins that exist in large amounts in the plant cytosol, but not by chloroplastic m-, f-, x-, y- and z-type thioredoxins, in a thiol-independent manner. The transient expression of RipAY decreased the GSH level in plant cells and affected the flg22-triggered production of reactive oxygen species (ROS) and expression of pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) marker genes in Nicotiana benthamiana leaves. These results indicate that RipAY is activated by host cytosolic thioredoxins and degrades GSH specifically in plant cells to suppress plant immunity. PMID:27073091

  1. Degradation of estrogens by Rhodococcus zopfii and Rhodococcus equi isolates from activated sludge in wastewater treatment plants.

    PubMed

    Yoshimoto, Takeshi; Nagai, Fumiko; Fujimoto, Junji; Watanabe, Koichi; Mizukoshi, Harumi; Makino, Takashi; Kimura, Kazumasa; Saino, Hideyuki; Sawada, Haruji; Omura, Hiroshi

    2004-09-01

    We have isolated four strains of Rhodococcus which specifically degrade estrogens by using enrichment culture of activated sludge from wastewater treatment plants. Strain Y 50158, identified as Rhodococcus zopfii, completely and rapidly degraded 100 mg of 17beta-estradiol, estrone, estriol, and ethinyl estradiol/liter, as demonstrated by thin-layer chromatography and gas chromatography-mass spectrometry analyses. Strains Y 50155, Y 50156, and Y 50157, identified as Rhodococcus equi, showed degradation activities comparable with that of Y 50158. Using the random amplified polymorphism DNA fingerprinting test, these three strains were confirmed to have been derived from different sources. R. zopfii Y 50158, which showed the highest activity among these four strains, revealed that the strain selectively degraded 17beta-estradiol during jar fermentation, even when glucose was used as a readily utilizable carbon source in the culture medium. Measurement of estrogenic activities with human breast cancer-derived MVLN cells showed that these four strains each degraded 100 mg of 17beta-estradiol/liter to 1/100 of the specific activity level after 24 h. It is thus suggested that these strains degrade 17beta-estradiol into substances without estrogenic activity. PMID:15345411

  2. Potential for plant growth promotion by a consortium of stress-tolerant 2,4-dinitrotoluene-degrading bacteria: isolation and characterization of a military soil

    PubMed Central

    Thijs, Sofie; Weyens, Nele; Sillen, Wouter; Gkorezis, Panagiotis; Carleer, Robert; Vangronsveld, Jaco

    2014-01-01

    The presence of explosives in soils and the interaction with drought stress and nutrient limitation are among the environmental factors that severely affect plant growth on military soils. In this study, we seek to isolate and identify the cultivable bacteria of a 2,4-dinitrotoluene (DNT) contaminated soil (DS) and an adjacent grassland soil (GS) of a military training area aiming to isolate new plant growth-promoting (PGP) and 2,4-DNT-degrading strains. Metabolic profiling revealed disturbances in Ecocarbon use in the bare DS; isolation of cultivable strains revealed a lower colony-forming-unit count and a less diverse community associated with DS in comparison with GS. New 2,4-DNT-tolerant strains were identified by selective enrichments, which were further characterized by auxanography for 2,4-DNT use, resistance to drought stress, cold, nutrient starvation and PGP features. By selecting multiple beneficial PGP and abiotic stress-resistant strains, efficient 2,4-DNT-degrading consortia were composed. After inoculation, consortium UHasselt Sofie 3 with seven members belonging to Burkholderia, Variovorax, Bacillus, Pseudomonas and Ralstonia species was capable to successfully enhance root length of Arabidopsis under 2,4-DNT stress. After 9 days, doubling of main root length was observed. Our results indicate that beneficial bacteria inhabiting a disturbed environment have the potential to improve plant growth and alleviate 2,4-DNT stress. PMID:24467368

  3. Effects of Warming on Chlorophyll Degradation and Carbohydrate Accumulation of Alpine Herbaceous Species during Plant Senescence on the Tibetan Plateau

    PubMed Central

    Shi, Changguang; Sun, Geng; Zhang, Hongxuan; Xiao, Bingxue; Ze, Bai; Zhang, Nannan; Wu, Ning

    2014-01-01

    Plant senescence is a critical life history process accompanied by chlorophyll degradation and has large implications for nutrient resorption and carbohydrate storage. Although photoperiod governs much of seasonal leaf senescence in many plant species, temperature has also been shown to modulate this process. Therefore, we hypothesized that climate warming would significantly impact the length of the plant growing season and ultimate productivity. To test this assumption, we measured the effects of simulated autumn climate warming paradigms on four native herbaceous species that represent distinct life forms of alpine meadow plants on the Tibetan Plateau. Conditions were simulated in open-top chambers (OTCs) and the effects on the degradation of chlorophyll, nitrogen (N) concentration in leaves and culms, total non-structural carbohydrate (TNC) in roots, growth and phenology were assessed during one year following treatment. The results showed that climate warming in autumn changed the senescence process only for perennials by slowing chlorophyll degradation at the beginning of senescence and accelerating it in the following phases. Warming also increased root TNC storage as a result of higher N concentrations retained in leaves; however, this effect was species dependent and did not alter the growing and flowering phenology in the following seasons. Our results indicated that autumn warming increases carbohydrate accumulation, not only by enhancing activities of photosynthetic enzymes (a mechanism proposed in previous studies), but also by affecting chlorophyll degradation and preferential allocation of resources to different plant compartments. The different responses to warming can be explained by inherently different growth and phenology patterns observed among the studied species. The results implied that warming leads to changes in the competitive balance among life forms, an effect that can subsequently shift vegetation distribution and species composition

  4. Isolation, plant colonization potential, and phenanthrene degradation performance of the endophytic bacterium Pseudomonas sp. Ph6-gfp

    PubMed Central

    Sun, Kai; Liu, Juan; Gao, Yanzheng; Jin, Li; Gu, Yujun; Wang, Wanqing

    2014-01-01

    This investigation provides a novel method of endophyte-aided removal of polycyclic aromatic hydrocarbons (PAHs) from plant bodies. A phenanthrene-degrading endophytic bacterium Pseudomonas sp. Ph6 was isolated from clover (Trifolium pratense L.) grown in a PAH-contaminated site. After being marked with the GFP gene, the colonization and distribution of strain Ph6-gfp was directly visualized in plant roots, stems, and leaves for the first time. After ryegrass (Lolium multiflorum Lam.) roots inoculation, strain Ph6-gfp actively and internally colonized plant roots and transferred vertically to the shoots. Ph6-gfp had a natural capacity to cope with phenanthrene in vitro and in planta. Ph6-gfp degraded 81.1% of phenanthrene (50 mg·L−1) in a culture solution within 15 days. The inoculation of plants with Ph6-gfp reduced the risks associated with plant phenanthrene contamination based on observations of decreased concentration, accumulation, and translocation factors of phenanthrene in ryegrass. Our results will have important ramifications in the assessment of the environmental risks of PAHs and in finding ways to circumvent plant PAH contamination. PMID:24964867

  5. Influence of rhizosphere microbial ecophysiological parameters from different plant species on butachlor degradation in a riparian soil.

    PubMed

    Yang, Changming; Wang, Mengmeng; Li, Jianhua

    2012-01-01

    Biogeochemical processes in riparian zones regulate contaminant movement to receiving waters and often mitigate the impact of upland sources of contaminants on water quality. However, little research has been reported on the microbial process and degradation potential of herbicide in a riparian soil. Field sampling and incubation experiments were conducted to investigate differences in microbial parameters and butachlor degradation in the riparian soil from four plant communities in Chongming Island, China. The results suggested that the rhizosphere soil had significantly higher total organic C and water-soluble organic C relative to the nonrhizosphere soil. Differences in rhizosphere microbial community size and physiological parameters among vegetation types were significant. The rhizosphere soil from the mixed community of Phragmites australis and Acorus calamus had the highest microbial biomass and biochemical activity, followed by A. calamus, P. australis and Zizania aquatica. Microbial ATP, dehydrogenase activity (DHA), and basal soil respiration (BSR) in the rhizosphere of the mixed community of P. australis and A. calamus were 58, 72, and 62% higher, respectively, than in the pure P. australis community. Compared with the rhizosphere soil of the pure plant communities, the mixed community of P. australis and A. calamus displayed a significantly greater degradation rate of butachlor in the rhizosphere soil. Residual butachlor concentrations in rhizosphere soil of the mixed community of P. australis and A. calamus and were 48, 63, and 68% lower than three pure plant communities, respectively. Butachlor degradation rates were positively correlated to microbial ATP, DHA, and BSR, indicating that these microbial parameters may be useful in assessing butachlor degradation potential in the riparian soil. PMID:22565253

  6. The Brazilian research contribution to knowledge of the plant communities from Antarctic ice free areas.

    PubMed

    Pereira, Antonio B; Putzke, Jair

    2013-09-01

    This work aims to summarize the results of research carried out by Brazilian researchers on the plant communities of Antarctic ice free areas during the last twenty five years. Since 1988 field work has been carried out in Elephant Island, King George Island, Nelson Island and Deception Island. During this period six papers were published on the chemistry of lichens, seven papers on plant taxonomy, five papers on plant biology, two studies on UVB photoprotection, three studies about the relationships between plant communities and bird colonies and eleven papers on plant communities from ice free areas. At the present, Brazilian botanists are researching the plant communities of Antarctic ice free areas in order to understand their relationships to soil microbial communities, the biodiversity, the distribution of the plants populations and their relationship with birds colonies. In addition to these activities, a group of Brazilian researchers are undertaking studies related to Antarctic plant genetic diversity, plant chemistry and their biotechnological applications. PMID:24068084

  7. The plant hopper Issus coleoptratus can detoxify phloem sap saponins including the degradation of the terpene core

    PubMed Central

    Himmelsbach, Markus; Weth, Agnes; Böhme, Christine; Schwarz, Martin; Bräunig, Peter; Baumgartner, Werner

    2016-01-01

    ABSTRACT Issus coleoptratus is a small plant hopper which mainly feeds on the phloem sap from ivy. Although all parts of ivy are poisonous as the plant contains saponins, especially hederasaponins, I. coleoptratus can cope with the poison. In contrast to other animals like the stick insect Carausius morosus which accumulates saponins in its body, I. coleoptratus can degrade and disintegrate not only the saponins but even the genines, i.e. the triterpene core of the substances. This is perhaps made possible by a specialised midgut and/or the salivary glands. When the glands and the gut are dissected and added to saponins in solution, the saponins, including the genines, are degraded ex vivo. PMID:26863940

  8. Role of proteolytic enzymes in degradation of plant tissues. Summary of results of studies completed on the prior

    SciTech Connect

    Lewosz, J.; Kelman, A.; Sequeira, L.

    1991-12-31

    Strain SR 394 of Erwinia carotovora (Ecc) produced proteases constitutively in all media tested. Growth of Ecc and production of protease were enhanced significantly by the presence of poetic materials and/or plant call walls in the test media. After electrofocusing, one major and one minor protease bands, at PI 4.8 and PI 5.1, respectively, were detected. Only one band of 43 kDa was detected on SDS gels. Only one protease band was detected in SDS gels of infected plant extracts. This protease was purified to homogeneity. It in a highly thermostable metal protease; it degrades gelatin, soluble collagen and hide powderazure, shows weak activity on casein and azocasein, but does not degrade insoluble collagen or elastin.

  9. The plant hopper Issus coleoptratus can detoxify phloem sap saponins including the degradation of the terpene core.

    PubMed

    Himmelsbach, Markus; Weth, Agnes; Böhme, Christine; Schwarz, Martin; Bräunig, Peter; Baumgartner, Werner

    2016-01-01

    Issus coleoptratus is a small plant hopper which mainly feeds on the phloem sap from ivy. Although all parts of ivy are poisonous as the plant contains saponins, especially hederasaponins, I. coleoptratus can cope with the poison. In contrast to other animals like the stick insect Carausius morosus which accumulates saponins in its body, I. coleoptratus can degrade and disintegrate not only the saponins but even the genines, i.e. the triterpene core of the substances. This is perhaps made possible by a specialised midgut and/or the salivary glands. When the glands and the gut are dissected and added to saponins in solution, the saponins, including the genines, are degraded ex vivo. PMID:26863940

  10. Role of anaerobic fungi in wheat straw degradation and effects of plant feed additives on rumen fermentation parameters in vitro.

    PubMed

    Dagar, S S; Singh, N; Goel, N; Kumar, S; Puniya, A K

    2015-01-01

    In the present study, rumen microbial groups, i.e. total rumen microbes (TRM), total anaerobic fungi (TAF), avicel enriched bacteria (AEB) and neutral detergent fibre enriched bacteria (NEB) were evaluated for wheat straw (WS) degradability and different fermentation parameters in vitro. Highest WS degradation was shown for TRM, followed by TAF, NEB and least by AEB. Similar patterns were observed with total gas production and short chain fatty acid profiles. Overall, TAF emerged as the most potent individual microbial group. In order to enhance the fibrolytic and rumen fermentation potential of TAF, we evaluated 18 plant feed additives in vitro. Among these, six plant additives namely Albizia lebbeck, Alstonia scholaris, Bacopa monnieri, Lawsonia inermis, Psidium guajava and Terminalia arjuna considerably improved WS degradation by TAF. Further evaluation showed A. lebbeck as best feed additive. The study revealed that TAF plays a significant role in WS degradation and their fibrolytic activities can be improved by inclusion of A. lebbeck in fermentation medium. Further studies are warranted to elucidate its active constituents, effect on fungal population and in vivo potential in animal system. PMID:25391347

  11. Investigation of relationships between removals of tetracycline and degradation products and physicochemical parameters in municipal wastewater treatment plant.

    PubMed

    Topal, Murat; Uslu Şenel, Gülşad; Öbek, Erdal; Arslan Topal, E Işıl

    2016-05-15

    Determination of the effect of physicochemical parameters on the removal of tetracycline (TC) and degradation products is important because of the importance of the removal of antibiotics in Wastewater Treatment Plant (WWTP). Therefore, the purpose of this study was to investigate the relationships between removals of TC and degradation products and physicochemical parameters in Municipal Wastewater Treatment Plant (MWWTP). For this aim, (i) the removals of physicochemical parameters in a MWWTP located in Elazığ city (Turkey) were determined (ii) the removals of TC and degradation products in MWWTP were determined (iii) the relationships between removals of TC and degradation products and physicochemical parameters were investigated. TC, 4-epitetracycline (ETC), 4-epianhydrotetracycline (EATC), anhydrotetracycline (ATC), and physicochemical parameters (pH, temperature, electrical conductivity (EC), suspended solids (SS), BOD5, COD, total organic carbon (TOC), NH4(+)-N, NO2(-)-N, NO3(-)-N and O-PO4(-3)) were determined. The calculation of the correlation coefficients of relationships between the physicochemical parameters and TC, EATC, ATC showed that, among the investigated parameters, EATC and SS most correlated. The removals of other physicochemical parameters were not correlated with TC, EATC and ATC. PMID:26950498

  12. Isolation and characterization of benzo[a]pyrene-degrading bacteria from the Tokyo Bay area and Tama River in Japan.

    PubMed

    Okai, Masahiko; Kihara, Ikumi; Yokoyama, Yuto; Ishida, Masami; Urano, Naoto

    2015-09-01

    Benzo[a]pyrene (BaP) is one of the polycyclic aromatic hydrocarbons, and has serious detrimental effects on human health and aquatic environments. In this study, we isolated nine bacterial strains capable of degrading BaP from the Tokyo Bay area and Tama River in Japan. The isolated bacteria belonged to the phyla Actinobacteria, Firmicutes, Proteobacteria and Bacteroidetes, indicating that the BaP-degrading bacteria were widely present in the hydrosphere. ITB11, which shared 100% 16S rRNA identity with Mesoflavibacter zeaxanthinifaciens in the phylum Bacteroidetes, showed the highest degradation of BaP (approximately 86%) among the nine isolated strains after 42 days. Moreover, it was found that three of the nine isolated strains collectively removed 50-55% of BaP during the first 7 days. Growth measurement of M. zeaxanthinifaciens revealed that the strain utilized BaP as a sole carbon and energy source and salicylate acted only as an inducer of BaP degradation. PMID:26316544

  13. Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park

    SciTech Connect

    Vishnivetskaya, Tatiana A.; Hamilton-Brehm, Scott D.; Podar, Mircea; Mosher, Jennifer J.; Palumbo, Anthony V.; Phelps, Tommy J.; Keller, Martin; Elkins, James G.

    2014-10-16

    The conversion of lignocellulosic biomass into biofuels can potentially be improved by employing robust microorganisms and enzymes that efficiently deconstruct plant polysaccharides at elevated temperatures. Many of the geothermal features of Yellowstone National Park (YNP) are surrounded by vegetation providing a source of allochthonic material to support heterotrophic microbial communities adapted to utilize plant biomass as a primary carbon and energy source. In this paper, a well-known hot spring environment, Obsidian Pool (OBP), was examined for potential biomass-active microorganisms using cultivation-independent and enrichment techniques. Analysis of 33,684 archaeal and 43,784 bacterial quality-filtered 16S rRNA gene pyrosequences revealed that archaeal diversity in the main pool was higher than bacterial; however, in the vegetated area, overall bacterial diversity was significantly higher. Of notable interest was a flooded depression adjacent to OBP supporting a stand of Juncus tweedyi, a heat-tolerant rush commonly found growing near geothermal features in YNP. The microbial community from heated sediments surrounding the plants was enriched in members of the Firmicutes including potentially (hemi)cellulolytic bacteria from the genera Clostridium, Anaerobacter, Caloramator, Caldicellulosiruptor, and Thermoanaerobacter. Enrichment cultures containing model and real biomass substrates were established at a wide range of temperatures (55–85 °C). Microbial activity was observed up to 80 °C on all substrates including Avicel, xylan, switchgrass, and Populus sp. Finally, independent of substrate, Caloramator was enriched at lower (<65 °C) temperatures while highly active cellulolytic bacteria Caldicellulosiruptor were dominant at high (>65 °C) temperatures.

  14. Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park

    DOE PAGESBeta

    Vishnivetskaya, Tatiana A.; Hamilton-Brehm, Scott D.; Podar, Mircea; Mosher, Jennifer J.; Palumbo, Anthony V.; Phelps, Tommy J.; Keller, Martin; Elkins, James G.

    2014-10-16

    The conversion of lignocellulosic biomass into biofuels can potentially be improved by employing robust microorganisms and enzymes that efficiently deconstruct plant polysaccharides at elevated temperatures. Many of the geothermal features of Yellowstone National Park (YNP) are surrounded by vegetation providing a source of allochthonic material to support heterotrophic microbial communities adapted to utilize plant biomass as a primary carbon and energy source. In this paper, a well-known hot spring environment, Obsidian Pool (OBP), was examined for potential biomass-active microorganisms using cultivation-independent and enrichment techniques. Analysis of 33,684 archaeal and 43,784 bacterial quality-filtered 16S rRNA gene pyrosequences revealed that archaeal diversitymore » in the main pool was higher than bacterial; however, in the vegetated area, overall bacterial diversity was significantly higher. Of notable interest was a flooded depression adjacent to OBP supporting a stand of Juncus tweedyi, a heat-tolerant rush commonly found growing near geothermal features in YNP. The microbial community from heated sediments surrounding the plants was enriched in members of the Firmicutes including potentially (hemi)cellulolytic bacteria from the genera Clostridium, Anaerobacter, Caloramator, Caldicellulosiruptor, and Thermoanaerobacter. Enrichment cultures containing model and real biomass substrates were established at a wide range of temperatures (55–85 °C). Microbial activity was observed up to 80 °C on all substrates including Avicel, xylan, switchgrass, and Populus sp. Finally, independent of substrate, Caloramator was enriched at lower (<65 °C) temperatures while highly active cellulolytic bacteria Caldicellulosiruptor were dominant at high (>65 °C) temperatures.« less

  15. Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park.

    PubMed

    Vishnivetskaya, Tatiana A; Hamilton-Brehm, Scott D; Podar, Mircea; Mosher, Jennifer J; Palumbo, Anthony V; Phelps, Tommy J; Keller, Martin; Elkins, James G

    2015-02-01

    The conversion of lignocellulosic biomass into biofuels can potentially be improved by employing robust microorganisms and enzymes that efficiently deconstruct plant polysaccharides at elevated temperatures. Many of the geothermal features of Yellowstone National Park (YNP) are surrounded by vegetation providing a source of allochthonic material to support heterotrophic microbial communities adapted to utilize plant biomass as a primary carbon and energy source. In this study, a well-known hot spring environment, Obsidian Pool (OBP), was examined for potential biomass-active microorganisms using cultivation-independent and enrichment techniques. Analysis of 33,684 archaeal and 43,784 bacterial quality-filtered 16S rRNA gene pyrosequences revealed that archaeal diversity in the main pool was higher than bacterial; however, in the vegetated area, overall bacterial diversity was significantly higher. Of notable interest was a flooded depression adjacent to OBP supporting a stand of Juncus tweedyi, a heat-tolerant rush commonly found growing near geothermal features in YNP. The microbial community from heated sediments surrounding the plants was enriched in members of the Firmicutes including potentially (hemi)cellulolytic bacteria from the genera Clostridium, Anaerobacter, Caloramator, Caldicellulosiruptor, and Thermoanaerobacter. Enrichment cultures containing model and real biomass substrates were established at a wide range of temperatures (55-85 °C). Microbial activity was observed up to 80 °C on all substrates including Avicel, xylan, switchgrass, and Populus sp. Independent of substrate, Caloramator was enriched at lower (<65 °C) temperatures while highly active cellulolytic bacteria Caldicellulosiruptor were dominant at high (>65 °C) temperatures. PMID:25319238

  16. Determinants of farmers' tree-planting investment decisions as a degraded landscape management strategy in the central highlands of Ethiopia

    NASA Astrophysics Data System (ADS)

    Gessesse, Berhan; Bewket, Woldeamlak; Bräuning, Achim

    2016-04-01

    Land degradation due to lack of sustainable land management practices is one of the critical challenges in many developing countries including Ethiopia. This study explored the major determinants of farm-level tree-planting decisions as a land management strategy in a typical farming and degraded landscape of the Modjo watershed, Ethiopia. The main data were generated from household surveys and analysed using descriptive statistics and a binary logistic regression model. The model significantly predicted farmers' tree-planting decisions (χ2 = 37.29, df = 15, P < 0.001). Besides, the computed significant value of the model revealed that all the considered predictor variables jointly influenced the farmers' decisions to plant trees as a land management strategy. The findings of the study demonstrated that the adoption of tree-growing decisions by local land users was a function of a wide range of biophysical, institutional, socioeconomic and household-level factors. In this regard, the likelihood of household size, productive labour force availability, the disparity of schooling age, level of perception of the process of deforestation and the current land tenure system had a critical influence on tree-growing investment decisions in the study watershed. Eventually, the processes of land-use conversion and land degradation were serious, which in turn have had adverse effects on agricultural productivity, local food security and poverty trap nexus. Hence, the study recommended that devising and implementing sustainable land management policy options would enhance ecological restoration and livelihood sustainability in the study watershed.

  17. Determinants of farmers' tree planting investment decision as a degraded landscape management strategy in the central highlands of Ethiopia

    NASA Astrophysics Data System (ADS)

    Gessesse, B.; Bewket, W.; Bräuning, A.

    2015-11-01

    Land degradation due to lack of sustainable land management practices are one of the critical challenges in many developing countries including Ethiopia. This study explores the major determinants of farm level tree planting decision as a land management strategy in a typical framing and degraded landscape of the Modjo watershed, Ethiopia. The main data were generated from household surveys and analysed using descriptive statistics and binary logistic regression model. The model significantly predicted farmers' tree planting decision (Chi-square = 37.29, df = 15, P<0.001). Besides, the computed significant value of the model suggests that all the considered predictor variables jointly influenced the farmers' decision to plant trees as a land management strategy. In this regard, the finding of the study show that local land-users' willingness to adopt tree growing decision is a function of a wide range of biophysical, institutional, socioeconomic and household level factors, however, the likelihood of household size, productive labour force availability, the disparity of schooling age, level of perception of the process of deforestation and the current land tenure system have positively and significantly influence on tree growing investment decisions in the study watershed. Eventually, the processes of land use conversion and land degradation are serious which in turn have had adverse effects on agricultural productivity, local food security and poverty trap nexus. Hence, devising sustainable and integrated land management policy options and implementing them would enhance ecological restoration and livelihood sustainability in the study watershed.

  18. Polysaccharide Degradation

    NASA Astrophysics Data System (ADS)

    Stone, Bruce A.; Svensson, Birte; Collins, Michelle E.; Rastall, Robert A.

    An overview of current and potential enzymes used to degrade polysaccharides is presented. Such depolymerases are comprised of glycoside hydrolases, glycosyl transferases, phosphorylases and lyases, and their classification, active sites and action patterns are discussed. Additionally, the mechanisms that these enzymes use to cleave glycosidic linkages is reviewed as are inhibitors of depolymerase activity; reagents which react with amino acid residues, glycoside derivatives, transition state inhibitors and proteinaceous inhibitors. The characterization of various enzymes of microbial, animal or plant origin has led to their widespread use in the production of important oligosaccharides which can be incorporated into food stuffs. Sources of polysaccharides of particular interest in this chapter are those from plants and include inulin, dextran, xylan and pectin, as their hydrolysis products are purported to be functional foods in the context of gastrointestinal health. An alternative use of degraded polysaccharides is in the treatment of disease. The possibility exists to treat bacterial exopolysaccharide with lyases from bacteriophage to produce oligosaccharides exhibiting bioactive sequences. Although this area is currently in its infancy the knowledge is available to investigate further.

  19. Biotemplated synthesis of high specific surface area copper-doped hollow spherical titania and its photocatalytic research for degradating chlorotetracycline

    NASA Astrophysics Data System (ADS)

    Bu, Dan; Zhuang, Huisheng

    2013-01-01

    Copper-doped titania (Cu/TiO2) hollow microspheres were fabricated using the rape pollen as biotemplates via an improved sol-gel method and a followed calcinations process. In the fabricated process, a titanium(IV)-isopropoxide-based sol directly coated onto the surface of rape pollen. Subsequently, after calcinations, rape pollen was removed by high temperature and the hollow microsphere structure was retained. The average diameter of as-obtained hollow microspheres is 15-20 μm and the thickness of shell is approximately 0.6 μm. Knowing from XRD results, the main crystal phase of microspheres is anatase, coupled with rutile. The specific surface area varied between 141.80 m2/g and 172.51 m2/g. This hollow sphere photocatalysts with high specific surface area exhibited stronger absorption ability and higher photoactivity, stimulated by visible light. The degradation process of chlortetracycline (CTC) solution had been studied. The degradated results indicate that CTC could be effective degradated by fabricated hollow spherical materials. And the intermediate products formed in the photocatalytic process had been identified.

  20. A survey of medicinal plants used by Kavirajes of Chalna area, Khulna district, Bangladesh.

    PubMed

    Rahmatullah, Mohammed; Ferdausi, Dilara; Mollik, Ariful Haque; Jahan, Rownak; Chowdhury, Majeedul H; Haque, Wahid Mozammel

    2010-01-01

    Kavirajes or traditional medicinal practitioners form the primary healthcare providers of the predominantly rural population of Bangladesh. Kavirajes use a variety of medicinal plants for treatment of different ailments. The formulations prepared from medicinal plants vary considerably between Kavirajes of different regions of the country. The objective of this study was to conduct an ethnomedicinal survey amongst the Kavirajes of Chalna area, Khulna district, Bangladesh. That area is known to contain a diversity of medicinal plants. Information on 50 plant species was obtained. These medicinal plants belonged to 49 genera and 33 families. Twenty five plants were used to treat skin diseases and twenty three plants for treatment of intestinal tract disorders, which included constipation, indigestion, stomachache, diarrhea, and dysentery. Fourteen plants were also used by the Kavirajes to treat cancer or tumor. Nine plants were used as insecticide, eight for rheumatoid arthritis, and seven for wounds. Five plants were used to treat jaundice. Five plants were also utilized to treat animal and snake bites, which included tiger bites. Six plants were used to treat diabetes, and two each for the treatment of leprosy, and sexually transmitted diseases like gonorrhea. Five plants were used to treat impotency, while one plant was used as an abortifacient. Three plants were used to treat helminthiasis, which we found to be quite common amongst the population, while four plants were used to treat heart disorders. Taken together, these plant species offer considerable potential for discovery of novel compounds of pharmacological interest. PMID:21304618

  1. Comparing anthracene and fluorene degradation in anthracene and fluorene-contaminated soil by single and mixed plant cultivation.

    PubMed

    Somtrakoon, Khanitta; Chouychai, Waraporn; Lee, Hung

    2014-01-01

    The ability of three plant species (sweet corn, cucumber, and winged bean) to remediate soil spiked with 138.9 and 95.9 mg of anthracene and fluorene per kg of dry soil, respectively, by single and double plant co-cultivation was investigated. After 15 and 30 days of transplantation, plant elongation, plant weight, chlorophyll content, and the content of each PAH in soil and plant tissues were determined. Based on PAH removal and plant health, winged bean was the most effective plant for phytoremediation when grown alone; percentage of fluorene and anthracene remaining in the rhizospheric soil after 30 days were 7.8% and 24.2%, respectively. The most effective combination of plants for phytoremediation was corn and winged bean; on day 30, amounts of fluorene and anthracene remaining in the winged bean rhizospheric soil were 3.4% and 14.3%, respectively; amounts of fluorene and anthracene remaining in the sweet corn rhizospheric soil were 4.1% and 8.8%, respectively. Co-cultivation of sweet corn and cucumber could remove fluorene to a higher extent than anthracene from soil within 15 days, but these plants did not survive and died before day 30. The amounts of fluorene remaining in the rhizospheric soil of corn and cucumber were only 14% and 17.3%, respectively, on day 15. No PAHs were detected in plant tissues. This suggests that phytostimulation of microbial degradation in the rhizosphere was most likely the mechanism by which the PAHs were removed from the spiked soil. The results show that co-cultivation of plants has merit in the phytoremediation of PAH-spiked soil. PMID:24912240

  2. [Effects of large-area planting water hyacinth on macro-benthos community structure and biomass].

    PubMed

    Liu, Guo-Feng; Liu, Hai-Qin; Zhang, Zhi-Yong; Zhang, Ying-Ying; Yan, Shao-Hua; Zhong, Ji-Cheng; Fan, Cheng-Xin

    2010-12-01

    The effects on macro-benthos and benthos environment of planting 200 hm2 water hyacinth (E. crassipens) in Zhushan Bay, Lake Taihu, were studied during 8-10 months consecutive surveys. Results indicated that average densities of mollusca (the main species were Bellamya aeruginosa) in far-planting, near-planting and planting area were 276.67, 371.11 and 440.00 ind/m2, respectively, and biomass were 373.15, 486.57 and 672.54 g/m2, respectively, showed that average density and biomass of planting area's were higher than those of others. However, the average density and biomass of Oligochaeta (the main species was Limodrilus hoffmeisteri) and Chironomidae in planting area were lower than that of outside planting area. The density and biomass of three dominant species of benthic animal increased quickly during 8-9 months, decreased quickly in October inside and outside water hyacinth planting area. The reason of this phenomenon could be possible that lots of cyanobacteria cells died and consumed dissolve oxygen in proceed decomposing. Algae cells released lots of phosphorus and nitrogen simultaneously, so macro-benthos died in this environment. The indexes of Shannon-Weaver and Simpson indicated that water environment was in moderate polluted state. On the basis of the survey results, the large-area and high-density planting water hyacinth haven't demonstrated a great impact on macrobenthos and benthos environment in short planting time (about 6 months planting time). PMID:21360881

  3. Ozone degrades common herbivore-induced plant volatiles: does this affect herbivore prey location by predators and parasitoids?

    PubMed

    Pinto, Delia M; Blande, James D; Nykänen, Riikka; Dong, Wen-Xia; Nerg, Anne-Marja; Holopainen, Jarmo K

    2007-04-01

    Inducible terpenes and lipoxygenase pathway products, e.g., green-leaf volatiles (GLVs), are emitted by plants in response to herbivory. They are used by carnivorous arthropods to locate prey. These compounds are highly reactive with atmospheric pollutants. We hypothesized that elevated ozone (O(3)) may affect chemical communication between plants and natural enemies of herbivores by degrading signal compounds. In this study, we have used two tritrophic systems (Brassica oleracea-Plutella xylostella-Cotesia plutellae and Phaseolus lunatus-Tetranychus urticae-Phytoseiulus persimilis) to show that exposure of plants to moderately enhanced atmospheric O(3) levels (60 and 120 nl l(-1)) results in complete degradation of most herbivore-induced terpenes and GLVs, which is congruent with our hypothesis. However, orientation behavior of natural enemies was not disrupted by O(3) exposure in either tritrophic system. Other herbivore-induced volatiles, such as benzyl cyanide, a nitrile in cabbage, and methyl salicylate in lima bean, were not significantly reduced in reactions with O(3). We suggest that more atmospherically stable herbivore-induced volatile compounds can provide important long-distance plant-carnivore signals and may be used by natural enemies of herbivores to orientate in O(3)-polluted environments. PMID:17333375

  4. Temporal and Spatial Patterns in Thermokarst Lake Area Change in Yukon Flats, Alaska: an Indication of Permafrost Degradation

    NASA Astrophysics Data System (ADS)

    Chen, M.; Rowland, J. C.; Wilson, C. J.; Altmann, G.; Brumby, S. P.

    2011-12-01

    The formation, expansion, and drainage of thermokarst lakes is determined by the lateral and vertical degradation of permafrost. Consequently, areal changes in thermokarst lakes can reflect changes in the spatial distribution and depth of permafrost. However, natural variability in lake areas confounds the long term trend and makes it difficult to detect permafrost degradation by simply comparing lake areas from different time periods. In this study, we used Landsat images of 16 time periods between 1984 and 2009 to extract lake area (closed basin lakes only) for a 422,382 ha study area within Yukon Flats, Alaska. A multiple linear regression model was built to quantify the long term change in lake area. In this model, we included LWB (local water balance, defined as difference between total precipitation and total potential evapotranspiration since the preceding October), MDT (mean daily temperature from May 1st to the date that Landsat image was acquired) and PRD (four time periods: 1984-1986, 1992, 1999-2002, and 2009). MDT was used to indicate the active layer depth. Both LWB and MDT were used to account for natural variability in lake area. The model explained 95% of the total variability in lake area, with 62%, 16% and 17% accounted for by LWB, MDT and PRD respectively. Using the total lake area (15898 ha) in 1984-1986 as a baseline, lake area increased by 12% in 1992, and decreased by 6% during 1999-2002 and 8% in 2009. Among the 1,667 lakes, 267 lakes showed an area decrease and 115 lakes showed an increase. The expanding lakes were distributed along the Yukon River and its main tributaries (Beaver creek and Birch creek), while the shrinking lakes were located farther away from rivers or on fluvial terraces. A potential reason for the spatial pattern of expanding and shrinking lakes is that, after permafrost thaws, lakes can become connected to the groundwater system. Lakes close to the rivers may be recharged by groundwater due to their lower position

  5. Experimental cultivation of cannabis plants in the Mediterranean area.

    PubMed

    Cortis, G; Luchi, P; Palmas, M

    1985-01-01

    In research carried out in 1982, which included the cultivation of cannabis plants with low, medium and high levels of delta 9-tetrahydrocannabinol (THC), the authors have determined the parameters for individualization and classification of cannabis plants according to their intoxicant potential. This can help to provide courts of law with valid supportive expertise on cannabis trafficking cases. The parameters are the percentages of THC in cannabinoids and in the dried substance of a plant, as well as the percentage of cannabinoids in the dried substance. On the basis of these parameters, the authors have found that a cannabis plant in which the percentage of THC exceeds 50 per cent of the total amount of cannabinoids of the extractable resin and 0.3 per cent of the total amount of dried substance, and in which the amounts of resin and cannabinoids are substantial, has a considerable intoxicant potential and is liable to be used for illicit production of cannabis for abuse. On the contrary, a plant with a THC level below 50 per cent of the cannabinoids and 0.3 per cent of the dried substance, in addition to a low level of total cannabinoids, has low intoxicant potential and can be used in industry for the production of oil and rope. On the basis of these parameters it is also possible to predict the intoxicant potential of a young cannabis plant harvested at a relatively early stage of its development. PMID:3011161

  6. Combining proteomics and transcriptome sequencing to identify active plant-cell-wall-degrading enzymes in a leaf beetle

    PubMed Central

    2012-01-01

    Background The primary plant cell wall is a complex mixture of polysaccharides and proteins encasing living plant cells. Among these polysaccharides, cellulose is the most abundant and useful biopolymer present on earth. These polysaccharides also represent a rich source of energy for organisms which have evolved the ability to degrade them. A growing body of evidence suggests that phytophagous beetles, mainly species from the superfamilies Chrysomeloidea and Curculionoidea, possess endogenous genes encoding complex and diverse families of so-called plant cell wall degrading enzymes (PCWDEs). The presence of these genes in phytophagous beetles may have been a key element in their success as herbivores. Here, we combined a proteomics approach and transcriptome sequencing to identify PCWDEs present in larval gut contents of the mustard leaf beetle, Phaedon cochleariae. Results Using a two-dimensional proteomics approach, we recovered 11 protein bands, isolated using activity assays targeting cellulose-, pectin- and xylan-degrading enzymes. After mass spectrometry analyses, a total of 13 proteins putatively responsible for degrading plant cell wall polysaccharides were identified; these proteins belong to three glycoside hydrolase (GH) families: GH11 (xylanases), GH28 (polygalacturonases or pectinases), and GH45 (β-1,4-glucanases or cellulases). Additionally, highly stable and proteolysis-resistant host plant-derived proteins from various pathogenesis-related protein (PRs) families as well as polygalacturonase-inhibiting proteins (PGIPs) were also identified from the gut contents proteome. In parallel, transcriptome sequencing revealed the presence of at least 19 putative PCWDE transcripts encoded by the P. cochleariae genome. All of these were specifically expressed in the insect gut rather than the rest of the body, and in adults as well as larvae. The discrepancy observed in the number of putative PCWDEs between transcriptome and proteome analyses could be

  7. Developing Effective Continuous On-Line Monitoring Technologies to Manage Service Degradation of Nuclear Power Plants

    SciTech Connect

    Meyer, Ryan M.; Ramuhalli, Pradeep; Bond, Leonard J.; Cumblidge, Stephen E.

    2011-09-30

    Recently, there has been increased interest in using prognostics (i.e, remaining useful life (RUL) prediction) for managing and mitigating aging effects in service-degraded passive nuclear power reactor components. A vital part of this philosophy is the development of tools for detecting and monitoring service-induced degradation. Experience with in-service degradation has shown that rapidly-growing cracks, including several varieties of stress corrosion cracks (SCCs), can grow through a pipe in less than one fuel outage cycle after they initiate. Periodic inspection has limited effectiveness at detecting and managing such degradation requiring a more versatile monitoring philosophy. Acoustic emission testing (AET) and guided wave ultrasonic testing (GUT) are related technologies with potential for on-line monitoring applications. However, harsh operating conditions within NPPs inhibit the widespread implementation of both technologies. For AET, another hurdle is the attenuation of passive degradation signals as they travel though large components, relegating AET to targeted applications. GUT is further hindered by the complexity of GUT signatures limiting its application to the inspection of simple components. The development of sensors that are robust and inexpensive is key to expanding the use of AET and GUT for degradation monitoring in NPPs and improving overall effectiveness. Meanwhile, the effectiveness of AET and GUT in NPPs can be enhanced through thoughtful application of tandem AET-GUT techniques.

  8. Carbohydrate-Active Enzymes in Pythium and Their Role in Plant Cell Wall and Storage Polysaccharide Degradation

    PubMed Central

    Zerillo, Marcelo M.; Adhikari, Bishwo N.; Hamilton, John P.; Buell, C. Robin; Lévesque, C. André; Tisserat, Ned

    2013-01-01

    Carbohydrate-active enzymes (CAZymes) are involved in the metabolism of glycoconjugates, oligosaccharides, and polysaccharides and, in the case of plant pathogens, in the degradation of the host cell wall and storage compounds. We performed an in silico analysis of CAZymes predicted from the genomes of seven Pythium species (Py. aphanidermatum, Py. arrhenomanes, Py. irregulare, Py. iwayamai, Py. ultimum var. ultimum, Py. ultimum var. sporangiiferum and Py. vexans) using the “CAZymes Analysis Toolkit” and “Database for Automated Carbohydrate-active Enzyme Annotation” and compared them to previously published oomycete genomes. Growth of Pythium spp. was assessed in a minimal medium containing selected carbon sources that are usually present in plants. The in silico analyses, coupled with our in vitro growth assays, suggest that most of the predicted CAZymes are involved in the metabolism of the oomycete cell wall with starch and sucrose serving as the main carbohydrate sources for growth of these plant pathogens. The genomes of Pythium spp. also encode pectinases and cellulases that facilitate degradation of the plant cell wall and are important in hyphal penetration; however, the species examined in this study lack the requisite genes for the complete saccharification of these carbohydrates for use as a carbon source. Genes encoding for xylan, xyloglucan, (galacto)(gluco)mannan and cutin degradation were absent or infrequent in Pythium spp.. Comparative analyses of predicted CAZymes in oomycetes indicated distinct evolutionary histories. Furthermore, CAZyme gene families among Pythium spp. were not uniformly distributed in the genomes, suggesting independent gene loss events, reflective of the polyphyletic relationships among some of the species. PMID:24069150

  9. Regulation of Leaf Starch Degradation by Abscisic Acid Is Important for Osmotic Stress Tolerance in Plants[OPEN

    PubMed Central

    Thalmann, Matthias; Pazmino, Diana; Seung, David; Horrer, Daniel; Nigro, Arianna; Meier, Tiago; Zeeman, Samuel C.; Santelia, Diana

    2016-01-01

    Starch serves functions that range over a timescale of minutes to years, according to the cell type from which it is derived. In guard cells, starch is rapidly mobilized by the synergistic action of β-AMYLASE1 (BAM1) and α-AMYLASE3 (AMY3) to promote stomatal opening. In the leaves, starch typically accumulates gradually during the day and is degraded at night by BAM3 to support heterotrophic metabolism. During osmotic stress, starch is degraded in the light by stress-activated BAM1 to release sugar and sugar-derived osmolytes. Here, we report that AMY3 is also involved in stress-induced starch degradation. Recently isolated Arabidopsis thaliana amy3 bam1 double mutants are hypersensitive to osmotic stress, showing impaired root growth. amy3 bam1 plants close their stomata under osmotic stress at similar rates as the wild type but fail to mobilize starch in the leaves. 14C labeling showed that amy3 bam1 plants have reduced carbon export to the root, affecting osmolyte accumulation and root growth during stress. Using genetic approaches, we further demonstrate that abscisic acid controls the activity of BAM1 and AMY3 in leaves under osmotic stress through the AREB/ABF-SnRK2 kinase-signaling pathway. We propose that differential regulation and isoform subfunctionalization define starch-adaptive plasticity, ensuring an optimal carbon supply for continued growth under an ever-changing environment. PMID:27436713

  10. The relevance of humus forms for land degradation in Mediterranean mountainous areas

    NASA Astrophysics Data System (ADS)

    Sevink, J.; Verstraten, J. M.; Jongejans, J.

    1998-06-01

    In the Gavarras (NE Spain), a large number of plots on respective schists, leucogranite and granodiorite was studied for their soils and vegetation. Results were used to check conclusions from earlier studies of Mediterranean forest soils (mostly shallow Regosols and Cambisols) on such acidic to intermediate rocks. They confirmed that the humus form depends on catenary position and lithology, and that aggregate stability and infiltration characteristics of the upper mineral soil horizon relate to humus form type. Aggregate stability of the topsoil was found to be relatively high in mor and mull type humus forms, but differences with moder type humus forms were not statistically significant. Differences in aggregate stability are attributed to the presence of stable humus-clay-iron complexes in mulls and to high fungal activity and organic matter content of mors. Low infiltration rates were only encountered in topsoils with mor type humus form, in line with results from the earlier studies. In deeper soil horizons with low organic matter content, aggregate stability will be largely related to soil reaction and base saturation. On leucogranite and granodiorite, these were found to vary strongly, most probably largely due to local differences in fast acid neutralizing capacity (ANC f). These local differences are primarily attributed to differences in the mineralogical composition and texture of the soil material, connected with differences in lithology and/or brought about by erosion, colluviation and soil formation. Consonant with earlier studies, it is concluded that the susceptibility of these forest soils to erosion largely depends on properties of the upper mineral soil horizon, which are controlled by or related with humus form development. General trends in the latter are clear and can be used to predict this susceptibility. In the case of land degradation, which implies a more severe erosion, deeper soil horizons are also involved. Spatial variability in

  11. Hydroxycinnamic Acid Degradation, a Broadly Conserved Trait, Protects Ralstonia solanacearum from Chemical Plant Defenses and Contributes to Root Colonization and Virulence.

    PubMed

    Lowe, Tiffany M; Ailloud, Florent; Allen, Caitilyn

    2015-03-01

    Plants produce hydroxycinnamic acid (HCA) defense compounds to combat pathogens, such as the bacterium Ralstonia solanacearum. We showed that an HCA degradation pathway is genetically and functionally conserved across diverse R. solanacearum strains. Further, a feruloyl-CoA synthetase (Δfcs) mutant that cannot degrade HCA was less virulent on tomato plants. To understand the role of HCA degradation in bacterial wilt disease, we tested the following hypotheses: HCA degradation helps the pathogen i) grow, as a carbon source; ii) spread, by reducing HCA-derived physical barriers; and iii) survive plant antimicrobial compounds. Although HCA degradation enabled R. solanacearum growth on HCA in vitro, HCA degradation was dispensable for growth in xylem sap and root exudate, suggesting that HCA are not significant carbon sources in planta. Acetyl-bromide quantification of lignin demonstrated that R. solanacearum infections did not affect the gross quantity or distribution of stem lignin. However, the Δfcs mutant was significantly more susceptible to inhibition by two HCA, namely, caffeate and p-coumarate. Finally, plant colonization assays suggested that HCA degradation facilitates early stages of infection and root colonization. Together, these results indicated that ability to degrade HCA contributes to bacterial wilt virulence by facilitating root entry and by protecting the pathogen from HCA toxicity. PMID:25423265

  12. Hydroxycinnamic acid degradation, a broadly conserved trait, protects Ralstonia solanacearum from chemical plant defenses and contributes to root colonization and virulence

    PubMed Central

    Lowe, Tiffany M.; Ailloud, Florent; Allen, Caitilyn

    2014-01-01

    Plants produce hydroxycinnamic acid defense compounds (HCAs) to combat pathogens, such as the bacterium Ralstonia solanacearum. We showed that an HCA degradation pathway is genetically and functionally conserved across diverse R. solanacearum strains. Further, a Δfcs (feruloyl-CoA synthetase) mutant that cannot degrade HCAs was less virulent on tomato plants. To understand the role of HCA degradation in bacterial wilt disease, we tested the following hypotheses: HCA degradation helps the pathogen (1) grow, as a carbon source; (2) spread, by reducing physical barriers HCA-derived; and (3) survive plant antimicrobial compounds. Although HCA degradation enabled R. solanacearum growth on HCAs in vitro, HCA degradation was dispensable for growth in xylem sap and root exudate, suggesting that HCAs are not significant carbon sources in planta. Acetyl-bromide quantification of lignin demonstrated that R. solanacearum infections did not affect the gross quantity or distribution of stem lignin. However, the Δfcs mutant was significantly more susceptible to inhibition by two HCAs: caffeate and p-coumarate. Finally, plant colonization assays suggested that HCA degradation facilitates early stages of infection and root colonization. Together, these results indicated that ability to degrade HCAs contributes to bacterial wilt virulence by facilitating root entry and by protecting the pathogen from HCA toxicity. PMID:25423265

  13. Functional and modular analyses of diverse endoglucanases from Ruminococcus albus 8, a specialist plant cell wall degrading bacterium.

    PubMed

    Iakiviak, Michael; Devendran, Saravanan; Skorupski, Anna; Moon, Young Hwan; Mackie, Roderick I; Cann, Isaac

    2016-01-01

    Ruminococcus albus 8 is a specialist plant cell wall degrading ruminal bacterium capable of utilizing hemicellulose and cellulose. Cellulose degradation requires a suite of enzymes including endoglucanases, exoglucanases, and β-glucosidases. The enzymes employed by R. albus 8 in degrading cellulose are yet to be completely elucidated. Through bioinformatic analysis of a draft genome sequence of R. albus 8, seventeen putatively cellulolytic genes were identified. The genes were heterologously expressed in E. coli, and purified to near homogeneity. On biochemical analysis with cellulosic substrates, seven of the gene products (Ra0185, Ra0259, Ra0325, Ra0903, Ra1831, Ra2461, and Ra2535) were identified as endoglucanases, releasing predominantly cellobiose and cellotriose. Each of the R. albus 8 endoglucanases, except for Ra0259 and Ra0325, bound to the model crystalline cellulose Avicel, confirming functional carbohydrate binding modules (CBMs). The polypeptides for Ra1831 and Ra2535 were found to contain distantly related homologs of CBM65. Mutational analysis of residues within the CBM65 of Ra1831 identified key residues required for binding. Phylogenetic analysis of the endoglucanases revealed three distinct subfamilies of glycoside hydrolase family 5 (GH5). Our results demonstrate that this fibrolytic bacterium uses diverse GH5 catalytic domains appended with different CBMs, including novel forms of CBM65, to degrade cellulose. PMID:27439730

  14. Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis

    PubMed Central

    2012-01-01

    Background Filamentous fungi are potent biomass degraders due to their ability to thrive in ligno(hemi)cellulose-rich environments. During the last decade, fungal genome sequencing initiatives have yielded abundant information on the genes that are putatively involved in lignocellulose degradation. At present, additional experimental studies are essential to provide insights into the fungal secreted enzymatic pools involved in lignocellulose degradation. Results In this study, we performed a wide analysis of 20 filamentous fungi for which genomic data are available to investigate their biomass-hydrolysis potential. A comparison of fungal genomes and secretomes using enzyme activity profiling revealed discrepancies in carbohydrate active enzymes (CAZymes) sets dedicated to plant cell wall. Investigation of the contribution made by each secretome to the saccharification of wheat straw demonstrated that most of them individually supplemented the industrial Trichoderma reesei CL847 enzymatic cocktail. Unexpectedly, the most striking effect was obtained with the phytopathogen Ustilago maydis that improved the release of total sugars by 57% and of glucose by 22%. Proteomic analyses of the best-performing secretomes indicated a specific enzymatic mechanism of U. maydis that is likely to involve oxido-reductases and hemicellulases. Conclusion This study provides insight into the lignocellulose-degradation mechanisms by filamentous fungi and allows for the identification of a number of enzymes that are potentially useful to further improve the industrial lignocellulose bioconversion process. PMID:22300648

  15. [Feasibility of the use of degraded inedible biomass of plants as a nutrient liquid for hydroponic cultivation].

    PubMed

    Guo, S S; Ai, W D; Hou, W H; Shi, W W

    2001-10-01

    Objective. To demonstrate that the recycled liquid, which originated from lettuce inedible biomass degraded by fixed microorganism (correction of microorgannism) and enzyme, can be used as a nutrient solution for lettuce hydroponic cultivation. Method. After biologically degrading the weighted, oven-dried and milled leaves and roots of lettuce in a biological reactor under aerobic condition, the original effluent and its supplemented effluent were used as nutrients for lettuce hydroponic cultivation. Result. The average dried weight (ADW) of lettuce from the original effluent group was approximately half of that from the control group, and the ADW from supplemented effluent group was about equal to that from the control group; some qualities of the lettuce such as a relatively lower content of NO3- from both the original effluent group and the supplemented effluent one improved, and some of those such as a relatively higher content of NO2- dropped. Conclusion. The biologically-degraded effluent was able to be used as nutrient solution for lettuce hydroponic cultivation, although the effects of the inorganic ion-supplemented effluent were much better; the plants of lettuce from the biologically-degraded effluent were safely edible. PMID:11842852

  16. Functional and modular analyses of diverse endoglucanases from Ruminococcus albus 8, a specialist plant cell wall degrading bacterium

    PubMed Central

    Iakiviak, Michael; Devendran, Saravanan; Skorupski, Anna; Moon, Young Hwan; Mackie, Roderick I.; Cann, Isaac

    2016-01-01

    Ruminococcus albus 8 is a specialist plant cell wall degrading ruminal bacterium capable of utilizing hemicellulose and cellulose. Cellulose degradation requires a suite of enzymes including endoglucanases, exoglucanases, and β-glucosidases. The enzymes employed by R. albus 8 in degrading cellulose are yet to be completely elucidated. Through bioinformatic analysis of a draft genome sequence of R. albus 8, seventeen putatively cellulolytic genes were identified. The genes were heterologously expressed in E. coli, and purified to near homogeneity. On biochemical analysis with cellulosic substrates, seven of the gene products (Ra0185, Ra0259, Ra0325, Ra0903, Ra1831, Ra2461, and Ra2535) were identified as endoglucanases, releasing predominantly cellobiose and cellotriose. Each of the R. albus 8 endoglucanases, except for Ra0259 and Ra0325, bound to the model crystalline cellulose Avicel, confirming functional carbohydrate binding modules (CBMs). The polypeptides for Ra1831 and Ra2535 were found to contain distantly related homologs of CBM65. Mutational analysis of residues within the CBM65 of Ra1831 identified key residues required for binding. Phylogenetic analysis of the endoglucanases revealed three distinct subfamilies of glycoside hydrolase family 5 (GH5). Our results demonstrate that this fibrolytic bacterium uses diverse GH5 catalytic domains appended with different CBMs, including novel forms of CBM65, to degrade cellulose. PMID:27439730

  17. EBS7 is a plant-specific component of a highly conserved endoplasmic reticulum-associated degradation system in Arabidopsis

    PubMed Central

    Liu, Yidan; Zhang, Congcong; Wang, Dinghe; Su, Wei; Liu, Linchuan; Wang, Muyang; Li, Jianming

    2015-01-01

    Endoplasmic reticulum (ER)-associated degradation (ERAD) is an essential part of an ER-localized protein quality-control system for eliminating terminally misfolded proteins. Recent studies have demonstrated that the ERAD machinery is conserved among yeast, animals, and plants; however, it remains unknown if the plant ERAD system involves plant-specific components. Here we report that the Arabidopsis ethyl methanesulfonate-mutagenized brassinosteroid-insensitive 1 suppressor 7 (EBS7) gene encodes an ER membrane-localized ERAD component that is highly conserved in land plants. Loss-of-function ebs7 mutations prevent ERAD of brassinosteroid insensitive 1-9 (bri1-9) and bri1-5, two ER-retained mutant variants of the cell-surface receptor for brassinosteroids (BRs). As a result, the two mutant receptors accumulate in the ER and consequently leak to the plasma membrane, resulting in the restoration of BR sensitivity and phenotypic suppression of the bri1-9 and bri1-5 mutants. EBS7 accumulates under ER stress, and its mutations lead to hypersensitivity to ER and salt stresses. EBS7 interacts with the ER membrane-anchored ubiquitin ligase Arabidopsis thaliana HMG-CoA reductase degradation 1a (AtHrd1a), one of the central components of the Arabidopsis ERAD machinery, and an ebs7 mutation destabilizes AtHrd1a to reduce polyubiquitination of bri1-9. Taken together, our results uncover a plant-specific component of a plant ERAD pathway and also suggest its likely biochemical function. PMID:26371323

  18. EBS7 is a plant-specific component of a highly conserved endoplasmic reticulum-associated degradation system in Arabidopsis.

    PubMed

    Liu, Yidan; Zhang, Congcong; Wang, Dinghe; Su, Wei; Liu, Linchuan; Wang, Muyang; Li, Jianming

    2015-09-29

    Endoplasmic reticulum (ER)-associated degradation (ERAD) is an essential part of an ER-localized protein quality-control system for eliminating terminally misfolded proteins. Recent studies have demonstrated that the ERAD machinery is conserved among yeast, animals, and plants; however, it remains unknown if the plant ERAD system involves plant-specific components. Here we report that the Arabidopsis ethyl methanesulfonate-mutagenized brassinosteroid-insensitive 1 suppressor 7 (EBS7) gene encodes an ER membrane-localized ERAD component that is highly conserved in land plants. Loss-of-function ebs7 mutations prevent ERAD of brassinosteroid insensitive 1-9 (bri1-9) and bri1-5, two ER-retained mutant variants of the cell-surface receptor for brassinosteroids (BRs). As a result, the two mutant receptors accumulate in the ER and consequently leak to the plasma membrane, resulting in the restoration of BR sensitivity and phenotypic suppression of the bri1-9 and bri1-5 mutants. EBS7 accumulates under ER stress, and its mutations lead to hypersensitivity to ER and salt stresses. EBS7 interacts with the ER membrane-anchored ubiquitin ligase Arabidopsis thaliana HMG-CoA reductase degradation 1a (AtHrd1a), one of the central components of the Arabidopsis ERAD machinery, and an ebs7 mutation destabilizes AtHrd1a to reduce polyubiquitination of bri1-9. Taken together, our results uncover a plant-specific component of a plant ERAD pathway and also suggest its likely biochemical function. PMID:26371323

  19. Monitoring the alkane monooxygenase gene alkB in different soil interfaces during plant litter degradation of C3 and C4 plants

    NASA Astrophysics Data System (ADS)

    Schulz, S.; Munch, J. C.; Schloter, M.

    2009-04-01

    Hydrocarbons like n-alkanes are ubiquitous in the environment as a result of anthropogenic contamination (e.g. oil spills) as well as a part of an ecosystem's biomass. For example n-alkanes become released during plant litter degradation; consequently they become a high abundant carbon source for microorganism. One possibility for the prokaryotic hydrocarbon metabolisation is an aerobic degradation pathway where the initial step is catalysed by the membrane bound alkane monooxygenase alkB. We analysed the influence of alkanes on the abundance of the alkB gene in different interfaces of the litter-soil system during the degradation of maize and pea litter. Therefore soil samples of a sandy and a loamy soil have been incubated with straw of maize and pea plants up to 30 weeks with constant soil moisture and temperature. Using quantitative real-time PCR we were able to monitor the changes of the abundance and the expression rates of alkB. In our experiments we focused on the straw layer, the litter/soil interface and the soil 1 cm below this interface (bulk soil). Our results clearly demonstrate time and space dependent abundance patterns of alkB genes and transcripts in the different layers studied, which are additionally shaped by the soil type used.

  20. Fungal plant cell wall-degrading enzyme database: a platform for comparative and evolutionary genomics in fungi and Oomycetes

    PubMed Central

    2013-01-01

    Background Plant cell wall-degrading enzymes (PCWDEs) play significant roles throughout the fungal life including acquisition of nutrients and decomposition of plant cell walls. In addition, many of PCWDEs are also utilized by biofuel and pulp industries. In order to develop a comparative genomics platform focused in fungal PCWDEs and provide a resource for evolutionary studies, Fungal PCWDE Database (FPDB) is constructed (http://pcwde.riceblast.snu.ac.kr/). Results In order to archive fungal PCWDEs, 22 sequence profiles were constructed and searched on 328 genomes of fungi, Oomycetes, plants and animals. A total of 6,682 putative genes encoding PCWDEs were predicted, showing differential distribution by their life styles, host ranges and taxonomy. Genes known to be involved in fungal pathogenicity, including polygalacturonase (PG) and pectin lyase, were enriched in plant pathogens. Furthermore, crop pathogens had more PCWDEs than those of rot fungi, implying that the PCWDEs analysed in this study are more needed for invading plant hosts than wood-decaying processes. Evolutionary analysis of PGs in 34 selected genomes revealed that gene duplication and loss events were mainly driven by taxonomic divergence and partly contributed by those events in species-level, especially in plant pathogens. Conclusions The FPDB would provide a fungi-specialized genomics platform, a resource for evolutionary studies of PCWDE gene families and extended analysis option by implementing Favorite, which is a data exchange and analysis hub built in Comparative Fungal Genomics Platform (CFGP 2.0; http://cfgp.snu.ac.kr/). PMID:24564786

  1. Regulatory analysis for the resolution of Generic Safety Issue 29: Bolting degradation or failure in nuclear power plants

    SciTech Connect

    Chang, T.Y.

    1991-09-01

    Generic Safety Issue (GSI)-29 deals with staff concerns about public risk due to degradation or failure of safety-related bolting in nuclear power plants. The issue was initiated in November 1982. Value-impact studies of a mandatory program on safety-related bolting for operating plants were inconclusive: therefore, additional regulatory requirements for operating plants could not be justified in accordance with provisions of 10 CFR 50.109. In addition, based on operating experience with bolting in both nuclear and conventional power plants, the actions already taken through bulletins, generic letters, and information notices, and the industry-proposed actions, the staff concluded that a sufficient technical basis exists for the resolution of GSI-29. The staff further concluded that leakage of bolted pressure joints is possible but catastrophic failure of a reactor coolant pressure boundary joint that will lead to significant accident sequences is highly unlikely. For future plants, it was concluded that a new Standard Review Plant section should be developed to codify existing bolting requirements and industry-developed initiatives. 9 refs., 1 tab.

  2. Plant--Pollinator Interactions: A Rich Area for Study.

    ERIC Educational Resources Information Center

    Aston, T. J.

    1987-01-01

    Outlines an adaptive framework for the study of plants and their pollinators in which both partners in the ecological relationship are seen as maximizing fitness through efficient use of the other as a resource. Suggests experimental projects to examine the validity of these assumptions giving an evolutionary emphasis. (Author/CW)

  3. Integration of remote sensing and ground-based techniques for the study of land degradation phenomena in coastal areas.

    NASA Astrophysics Data System (ADS)

    Imbrenda, Vito; Coluzzi, Rosa; Calamita, Giuseppe; Luigia Giannossi, Maria; D'Emilio, Mariagrazia; Lanfredi, Maria; Makris, John; Palombo, Angelo; Pascucci, Simone; Santini, Federico; Margiotta, Salvatore; Emanuela Bonomo, Agnese; De Martino, Gregory; Perrone, Angela; Rizzo, Enzo; Pignatti, Stefano; Summa, Vito; Simoniello, Tiziana

    2015-04-01

    Land degradation processes, such as salinization and waterlogging, are increasingly affecting extensive areas devoted to agriculture threatening the sustainability of farming practices. Soil salinization typically appears as an excess accumulation of salt generally pronounced at the soil surface. Commonly, soil salinity is defined and measured by means of laboratory measurements of the electrical conductivity of liquid extracted from saturated soil-paste or different soil-water suspensions. Lab measurements are generally time consuming, costly, destructive, untimely for practical situations where the determination of the causes and/or the assessment of management practices are of interest. Recently, emerging survey techniques proved to be powerful tools to support soil salinity appraisal reducing costs and increasing the amount of spatial information. In the frame of PRO-LAND project (PO-FESR Basilicata 2007-2013) the research activities have been focused on the study of a complex salinization phenomenon occurring in a coastal environment of the Basilicata region (Southern Italy) as a result of natural and anthropic disturbances. The study area is located in the southernmost part of the Bradanic Trough along the sandy Ionian coastal plain. The hydrogeological conditions affect shallowness of the aquifer (45-50 cm below the ground) allowing the occurrence of seawater intrusion. Moreover, during last century, human activities, i.e. built-up of dams, the emergence of farms and industries, played a relevant role in the alteration of soil and groundwater quality of the area. In this work, both ground-based and remote sensing data were used. First, a geophysical mapping of electrical conductivity was carried out using a multi-frequency portable electro-magnetic induction (EMI) sensor. Based on the geophysical mapping and on optimization sampling approach, a number of locations were identified to collect soil samples for the geomineralogical characterization. Airborne

  4. Phytoremediation potential of Petunia grandiflora Juss., an ornamental plant to degrade a disperse, disulfonated triphenylmethane textile dye Brilliant Blue G.

    PubMed

    Watharkar, Anuprita D; Khandare, Rahul V; Kamble, Apurva A; Mulla, Asma Y; Govindwar, Sanjay P; Jadhav, Jyoti P

    2013-02-01

    Phytoremediation provides an ecofriendly alternative for the treatment of pollutants like textile dyes. The purpose of this study was to explore phytoremediation potential of Petunia grandiflora Juss. by using its wild as well as tissue-cultured plantlets to decolorize Brilliant Blue G (BBG) dye, a sample of dye mixture and a real textile effluent. In vitro cultures of P. grandiflora were obtained by seed culture method. The decolorization experiments were carried out using wild as well as tissue-cultured plants independently. The enzymatic analysis of the plant roots was performed before and after decolorization of BBG. Metabolites formed after dye degradation were analyzed using UV-vis spectroscopy, high-performance liquid chromatography, Fourier transform infrared spectroscopy, and gas chromatography-mass spectrometry. Phytotoxicity studies were performed. Characterization of dye mixture and textile effluent was also studied. The wild and tissue-cultured plants of P. grandiflora showed the decolorized BBG up to 86 %. Significant increase in the activities of lignin peroxidase, laccase, NADH-2,6-dichlorophenol-indophenol reductase, and tyrosinase was found in the roots of the plants. Three metabolites of BBG were identified as 3-{[ethyl(phenyl)amino]methyl}benzenesulfonic acid, 3-{[methyl (phenyl)amino]methyl}benzenesulfonic amino acid, and sodium-3-[(cyclohexa-2,5-dien-1-ylideneamino)methyl]benzenesulfonate. Textile effluent sample and a synthetic mixture of dyes were also decolorized by P. grandiflora. Phytotoxicity test revealed the nontoxic nature of metabolites. P. grandiflora showed the potential to decolorize and degrade BBG to nontoxic metabolites. The plant has efficiently treated a sample of dye mixture and textile effluent. PMID:22529004

  5. Role of soil sorption and microbial degradation on dissipation of mesotrione in plant-available soil water.

    PubMed

    Shaner, Dale; Brunk, Galen; Nissen, Scott; Westra, Phil; Chen, Wenlin

    2012-01-01

    Mesotrione is a carotenoid biosynthesis-inhibiting herbicide labeled for pre-emergence and postemergence weed control in corn production. Understanding the factors that influence the dissipation of mesotrione in soil and in the plant-available water (PAW) is important for the environmental fate assessment and optimal weed management practices. The present research investigated the role of soil properties and microbial activities on the interrelated sorption and degradation processes of mesotrione in four soils by direct measurements of PAW. We found that mesotrione bound to the soils time dependently, with approximately 14 d to reach equilibrium. The 24-h batch-slurry equilibrium experiments provided the sorption partition coefficient ranging from 0.26 to 3.53 L kg(-1), depending on soil organic carbon and pH. The dissipation of mesotrione in the soil-bound phase was primarily attributed to desorption to the PAW. Degradation in the PAW was rapid and primarily dependent on microbial actions, with half-degradation time (DT(50)) <3 d in all four soils tested. The rapid degradation in the PAW became rate limited by sorption as more available molecules were depleted in the soil pore water, resulting in a more slowed overall process for the total soil-water system (DT(50) <26 d). The dissipation of mesotrione in the PAW was due to microbial metabolism and time-dependent sorption to the soils. A coupled kinetics model calibrated with the data from the laboratory centrifugation technique provided an effective approach to investigate the interrelated processes of sorption and degradation in realistic soil moisture conditions. PMID:22218185

  6. The plant pathology of native plant restoration

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Restoration of ecologically degraded sites will benefit from the convergence of knowledge drawn from such disparate and often compartmentalized (and heretofore not widely considered) areas of research as soil microbial ecology, plant pathology and agronomy. Restoration following biological control w...

  7. Reclamation of degraded areas in eastern Amazonian: The potential of Sclerolobium paniculatum Vogel

    SciTech Connect

    Junior, S.B.; Dias, L.E.; Pereira, C.A.

    1996-12-31

    Sclerolobium paniculatum Vogel (taxi-branco) is a legumenous tree native to the Brazilian Amazon region. It occurs in different types of soil and fix atmospheric nitrogen. The mechanical dormancy of the seeds may be overcome by immersing in boiling water and then removing them from the heat until the water cools to room temperature. The seed germination occurs in approximately 30 days. In greenhouse conditions, taxi-branco does not respond to the application of Ca and S. The critical levels in the soil of these two nutrients were 0.37 meq/100 cm{sup 3} and 5.10 mg/cm{sup 3}, respectively. The silvicultural performance of taxi-branco may be considered satisfactory when compared to other native tree species of the Amazon. In homogeneous plantations, taxi-branco trees produce about eight tons of litter per hectare. Its rapid growth accompanied by a high production of litter and its N fixation qualify this species as potentially suitable for the recuperation of degraded soils by human actions.

  8. Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensenis, and Caldicellulosiruptor lactoaceticus

    SciTech Connect

    Blumer-Schuette, Sara E.; Ozdemir, Inci; Mistry, Dhaval; Lucas, Susan; Lapidus, Alla L.; Cheng, Jan-Fang; Goodwin, Lynne A.; Pitluck, Sam; Land, Miriam L; Hauser, Loren John; Woyke, Tanja; Mikhailova, Natalia; Pati, Amrita; Kyrpides, Nikos C; Ivanova, N; Detter, J. Chris; Walston Davenport, Karen; Han, Cliff; Adams, Michael W. W.; Kelly, Robert M

    2011-01-01

    The genus Caldicellulosiruptor contains the most thermophilic, plant biomass-degrading bacteria isolated to date. Previously, genome sequences from three cellulolytic members of this genus were reported (C. saccharolyticus, C. bescii, and C. obsidiansis). To further explore the physiological and biochemical basis for polysaccharide degradation within this genus, five additional genomes were sequenced: C. hydrothermalis, C. kristjanssonii, C. kronotskyensis, C. lactoaceticus, and C. owensensis. Taken together, the seven completed and one draft-phase Caldicellulosiruptor genomes suggest that, while central metabolism is highly conserved, significant differences in glycoside hydrolase inventories and numbers of carbohydrate transporters exist, a finding which likely relates to variability observed in plant biomass degradation capacity.

  9. Wetland Survey of Selected Areas in the Oak Ridge Y-12 Plant Area of Responsibilty, Oak Ridge, Tennessee

    SciTech Connect

    Rosensteel

    1997-01-01

    This document was prepared to summarize wetland surveys performed in the Y- 1 2 Plant area of responsibility in June and July 1994. Wetland surveys were conducted in three areas within the Oak Ridge Y- 12 Plant area of responsibility in June and July 1994: the Upper East Fork Poplar Creek (UEFPC) Operable Unit (OU), part of the Bear Creek Valley OU (the upper watershed of Bear Creek from the culvert under Bear Creek Road upstream through the Y-12 West End Environmental Management Area, and the catchment of Bear Creek North Tributary 1), and part of Chestnut Ridge OU 2 (the McCoy Branch area south of Bethel Valley Road). Using the criteria and methods set forth in the Wetlands Delineation Manual, 18 wetland areas were identified in the 3 areas surveyed; these areas were classified according to the system developed by Cowardin. Fourteen wetlands and one wetland/pond area that are associated with disturbed or remnant stream channels and seeps were identified in the UEFPC OU. Three wetlands were identified in the Bear Creek Valley OU portion of the survey area. One wetland was identified in the riparian zone of McCoy Branch in the southern portion of Chestnut Ridge OU 2.

  10. Microorganisms and methods for degrading plant cell walls and complex hydrocarbons

    SciTech Connect

    Polne-Fuller, M.

    1991-09-24

    This patent describes a biologically pure multinucleated marine amoeba having the identifying characteristics of ATCC 40319. The amoeba being capable of digesting algal cell walls and having the further capacity to degrade paraffin, wax, polyethylene, polypropylene, polyvinyl chloride polyvinylidene di-chloride and mixtures thereof.

  11. Baseline risk assessment for groundwater operable units at the Chemical Plant Area and the Ordnance Works Area, Weldon Spring, Missouri

    SciTech Connect

    1999-07-14

    The U.S. Department of Energy (DOE) and the U.S. Department of the Army (DA) are evaluating conditions in groundwater and springs at the DOE chemical plant area and the DA ordnance works area near Weldon Spring, Missouri. The two areas are located in St. Charles County, about 48 km (30 mi) west of St. Louis. The 88-ha (217-acre) chemical plant area is chemically and radioactively contaminated as a result of uranium-processing activities conducted by the U.S. Atomic Energy Commission in the 1950s and 1960s and explosives-production activities conducted by the U.S. Army (Army) in the 1940s. The 6,974-ha (17,232-acre) ordnance works area is primarily chemically contaminated as a result of trinitrotoluene (TNT) and dinitrotoluene (DNT) manufacturing activities during World War II. This baseline risk assessment (BRA) is being conducted as part of the remedial investigation/feasibility study (RUFS) required under the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) of 1980, as amended. The purpose of the BRA is to evaluate potential human health and ecological impacts from contamination associated with the groundwater operable units (GWOUs) of the chemical plant area and ordnance works area. An RI/FS work plan issued jointly in 1995 by the DOE and DA (DOE 1995) analyzed existing conditions at the GWOUs. The work plan included a conceptual hydrogeological model based on data available when the report was prepared; this model indicated that the aquifer of concern is common to both areas. Hence, to optimize further data collection and interpretation efforts, the DOE and DA have decided to conduct a joint RI/BRA. Characterization data obtained from the chemical plant area wells indicate that uranium is present at levels slightly higher than background, with a few concentrations exceeding the proposed U.S. Environmental Protection Agency (EPA) maximum contaminant level (MCL) of 20 {micro}g/L (EPA 1996c). Concentrations of other radionuclides (e

  12. Photochemical degradation of hydroxy PAHs in ice: Implications for the polar areas.

    PubMed

    Ge, Linke; Li, Jun; Na, Guangshui; Chen, Chang-Er; Huo, Cheng; Zhang, Peng; Yao, Ziwei

    2016-07-01

    Hydroxyl polycyclic aromatic hydrocarbons (OH-PAHs) are derived from hydroxylated PAHs as contaminants of emerging concern. They are ubiquitous in the aqueous and atmospheric environments and may exist in the polar snow and ice, which urges new insights into their environmental transformation, especially in ice. In present study the simulated-solar (λ > 290 nm) photodegradation kinetics, products and pathways of four OH-PAHs (9-Hydroxyfluorene, 2-Hydroxyfluorene, 1-Hydroxypyrene and 9-Hydroxyphenanthrene) in ice were investigated, and the corresponding implications for the polar areas were explored. It was found that the kinetics followed the pseudo-first-order kinetics with the photolysis quantum yields (Φs) ranging from 7.48 × 10(-3) (1-Hydroxypyrene) to 4.16 × 10(-2) (2-Hydroxyfluorene). These 4 OH-PAHs were proposed to undergo photoinduced hydroxylation, resulting in multiple hydroxylated intermediates, particularly for 9-Hydroxyfluorene. Extrapolation of the lab data to the real environment is expected to provide a reasonable estimate of OH-PAH photolytic half-lives (t1/2,E) in mid-summer of the polar areas. The estimated t1/2,E values ranged from 0.08 h for 1-OHPyr in the Arctic to 54.27 h for 9-OHFl in the Antarctic. In consideration of the lower temperature and less microorganisms in polar areas, the photodegradation can be a key factor in determining the fate of OH-PAHs in sunlit surface snow/ice. To the best of our knowledge, this is the first report on the photodegradation of OH-PAHs in polar areas. PMID:27135699

  13. Genome Sequence of Amycolatopsis sp Strain ATCC 39116, a Plant Biomass-Degrading Actinomycete

    SciTech Connect

    Davis, Jennifer R.; Goodwin, Lynne A.; Woyke, Tanja; Teshima, Hazuki; Bruce, David; Detter, J. Chris; Tapia, Roxanne; Han, Shunsheng; Han, James; Pitluck, Sam; Nolan, Matt; Mikhailova, Natalia; Land, Miriam L; Sello, Jason K.

    2012-01-01

    We announce the availability of a high-quality draft of the genome sequence of Amycolatopsis sp. strain 39116, one of few bacterial species that are known to consume the lignin component of plant biomass. This genome sequence will further ongoing efforts to use microorganisms for the conversion of plant biomass into fuels and high-value chemicals.

  14. Genome sequence of Amycolatopsis sp. strain ATCC 39116, a plant biomass-degrading actinomycete.

    PubMed

    Davis, Jennifer R; Goodwin, Lynne A; Woyke, Tanja; Teshima, Hazuki; Bruce, David; Detter, Chris; Tapia, Roxanne; Han, Shunsheng; Han, James; Pitluck, Sam; Nolan, Matt; Mikhailova, Natalia; Land, Miriam L; Sello, Jason K

    2012-05-01

    We announce the availability of a high-quality draft of the genome sequence of Amycolatopsis sp. strain 39116, one of few bacterial species that are known to consume the lignin component of plant biomass. This genome sequence will further ongoing efforts to use microorganisms for the conversion of plant biomass into fuels and high-value chemicals. PMID:22493203

  15. Fate of psychoactive compounds in wastewater treatment plant and the possibility of their degradation using aquatic plants.

    PubMed

    Mackuľak, Tomáš; Mosný, Michal; Škubák, Jaroslav; Grabic, Roman; Birošová, Lucia

    2015-03-01

    In this study we analyzed and characterized 29 psychoactive remedies, illicit drugs and their metabolites in single stages of wastewater treatment plants in the capital city of Slovakia. Psychoactive compounds were present within all stages, and tramadol was detected at a very high concentration (706 ng/L). Significant decreases of codeine, THC-COOH, cocaine and buprenorphine concentration were observed in the biological stage. Consequently, we were interested in the possibility of alternative tertiary post-treatment of effluent water with the following aquatic plants: Cabomba caroliniana, Limnophila sessiliflora, Egeria najas and Iris pseudacorus. The most effective plant for tertiary cleansing was I. pseudacorus which demonstrated the best pharmaceutical removal capacity. After 48 h codeine and citalopram was removed with 87% efficiency. After 96 h were all analyzed compounds were eliminated with efficiencies above 58%. PMID:25818110

  16. Effect of power plant emission reductions on a nearby wilderness area: a case study in northwestern Colorado

    USGS Publications Warehouse

    Mast, M. Alisa; Ely, Daniel

    2013-01-01

    This study evaluates the effect of emission reductions at two coal-fired power plants in northwestern Colorado on a nearby wilderness area. Control equipment was installed at both plants during 1999–2004 to reduce SO2 and NOx emissions. One challenge was separating the effects of local from regional emissions, which also declined during the study period. The long-term datasets examined confirm that emission reductions had a beneficial effect on air and water quality in the wilderness. Despite a 75 % reduction in SO2 emissions, sulfate aerosols measured in the wilderness decreased by only 20 %. Because the site is relatively close to the power plants (2 to sulfate, particularly under conditions of low relative humidity, might account for this less than one-to-one response. On the clearest days, emissions controls appeared to improve visibility by about 1 deciview, which is a small but perceptible improvement. On the haziest days, however, there was little improvement perhaps reflecting the dominance of regional haze and other components of visibility degradation particularly organic carbon and dust. Sulfate and acidity in atmospheric deposition decreased by 50 % near the southern end of the wilderness of which 60 % was attributed to power plant controls and the remainder to reductions in regional sources. Lake water sulfate responded rapidly to trends in deposition declining at 28 lakes monitored in and near the wilderness. Although no change in the acid–base status was observed, few of the lakes appear to be at risk from chronic or episodic acidification.

  17. Effect of genotype on chemical composition, ruminal degradability and in vitro fermentation characteristics of maize residual plants.

    PubMed

    Zeller, F M E; Edmunds, B L; Schwarz, F J

    2014-10-01

    The objective of this study was to determine the changes to residual plant feeding value of early- and late-maturing maize varieties. The influence of the cell wall carbohydrate composition, in terms of neutral and acid detergent fibre (NDF and ADF) content, NDF and dry matter (DM) degradability, and in vitro organic matter digestibility and gas production on the feeding value of a range of maize genotypes, was measured. The different genotypes were allotted into two maturity groups (MG I--early to mid-early: S210-S240; MG II--mid-late to late: S 250-S280) and harvested at four different harvest dates (depending on the DM content of the kernels). The maize varieties of MG I had lower NDF and ADF contents and higher ruminal DM degradability, in vitro digestibility and gas production and thus a higher feeding value than MG II at the same stage of physiological maturity. A strong negative relationship between NDF content and the ruminal DM degradability (r = -0.81) was observed. The data indicate that the early-maturing varieties permit a larger flexibility in harvesting due to a longer period of starch inclusion into the kernel whilst simultaneously maintaining a good supply of rumen-available fibre. Conclusively, the higher feeding value of the early-maturing varieties, based on lower NDF and high DM digestibility, permits more flexibility in the harvesting period over the later-maturing varieties. PMID:24423073

  18. Transcriptional profiling of Gram-positive Arthrobacter in the phyllosphere: induction of pollutant degradation genes by natural plant phenolic compounds.

    PubMed

    Scheublin, Tanja R; Deusch, Simon; Moreno-Forero, Silvia K; Müller, Jochen A; van der Meer, Jan Roelof; Leveau, Johan H J

    2014-07-01

    Arthrobacter chlorophenolicus A6 is a Gram-positive, 4-chlorophenol-degrading soil bacterium that was recently shown to be an effective colonizer of plant leaf surfaces. The genetic basis for this phyllosphere competency is unknown. In this paper, we describe the genome-wide expression profile of A.chlorophenolicus on leaves of common bean (Phaseolus vulgaris) compared with growth on agar surfaces. In phyllosphere-grown cells, we found elevated expression of several genes known to contribute to epiphytic fitness, for example those involved in nutrient acquisition, attachment, stress response and horizontal gene transfer. A surprising result was the leaf-induced expression of a subset of the so-called cph genes for the degradation of 4-chlorophenol. This subset encodes the conversion of the phenolic compound hydroquinone to 3-oxoadipate, and was shown to be induced not only by 4-chlorophenol but also hydroquinone, its glycosylated derivative arbutin, and phenol. Small amounts of hydroquinone, but not arbutin or phenol, were detected in leaf surface washes of P.vulgaris by gas chromatography-mass spectrometry. Our findings illustrate the utility of genomics approaches for exploration and improved understanding of a microbial habitat. Also, they highlight the potential for phyllosphere-based priming of bacteria to stimulate pollutant degradation, which holds promise for the application of phylloremediation. PMID:24373130

  19. Effect of food processing on plant DNA degradation and PCR-based GMO analysis: a review.

    PubMed

    Gryson, Nicolas

    2010-03-01

    The applicability of a DNA-based method for GMO detection and quantification depends on the quality and quantity of the DNA. Important food-processing conditions, for example temperature and pH, may lead to degradation of the DNA, rendering PCR analysis impossible or GMO quantification unreliable. This review discusses the effect of several food processes on DNA degradation and subsequent GMO detection and quantification. The data show that, although many of these processes do indeed lead to the fragmentation of DNA, amplification of the DNA may still be possible. Length and composition of the amplicon may, however, affect the result, as also may the method of extraction used. Also, many techniques are used to describe the behaviour of DNA in food processing, which occasionally makes it difficult to compare research results. Further research should be aimed at defining ingredients in terms of their DNA quality and PCR amplification ability, and elaboration of matrix-specific certified reference materials. PMID:20012944

  20. The role of proteolytic enzymes in degradation of plant tissues: Summary report

    SciTech Connect

    Lewosz, J.; Kelman, A.; Sequeira, L.

    1989-01-01

    The proteolytic enzymes produced by Erwinia carotovora subsp. carotovora (Ecc-strain SR 394) grown on various media were examined by isoelectrofocusing in polyacrylamide gels over a pH range of 3-10. In addition to the main protease present in culture filtrates, low concentrations of several other proteases were present in extracts from potato tubers infected by Ecc. Proteases from all these sources were similar and had the following properties: pH optimum near 8.0, calcium dependent, insensitive to serine proteinase and SH-proteinase inhibitors, inhibited by EDTA, and highly thermostable. These enzymes degraded gelatin, soluble collagen and Hide Powder Azure, and showed weak activity on casein, but did not degrade insoluble collagen or elastin.

  1. Small-scale barriers mitigate desertification processes and enhance plant recruitment in a degraded semiarid grassland

    USGS Publications Warehouse

    Fick, Stephen E; Decker, Cheryl E.; Duniway, Michael C.; Miller, Mark E.

    2016-01-01

    Anthropogenic desertification is a problem that plagues drylands globally; however, the factors which maintain degraded states are often unclear. In Canyonlands National Park on the Colorado Plateau of southeastern Utah, many degraded grasslands have not recovered structure and function >40 yr after release from livestock grazing pressure, necessitating active restoration. We hypothesized that multiple factors contribute to the persistent degraded state, including lack of seed availability, surficial soil-hydrological properties, and high levels of spatial connectivity (lack of perennial vegetation and other surface structure to retain water, litter, seed, and sediment). In combination with seeding and surface raking treatments, we tested the effect of small barrier structures (“ConMods”) designed to disrupt the loss of litter, seed and sediment in degraded soil patches within the park. Grass establishment was highest when all treatments (structures, seed addition, and soil disturbance) were combined, but only in the second year after installation, following favorable climatic conditions. We suggest that multiple limiting factors were ameliorated by treatments, including seed limitation and microsite availability, seed removal by harvester ants, and stressful abiotic conditions. Higher densities of grass seedlings on the north and east sides of barrier structures following the summer months suggest that structures may have functioned as artificial “nurse-plants”, sheltering seedlings from wind and radiation as well as accumulating wind-blown resources. Barrier structures increased the establishment of both native perennial grasses and exotic annuals, although there were species-specific differences in mortality related to spatial distribution of seedlings within barrier structures. The unique success of all treatments combined, and even then only under favorable climatic conditions and in certain soil patches, highlights that restoration success (and

  2. An aerial radiological survey of the Pilgrim Station Nuclear Power Plant and surrounding area, Plymouth, Massachusetts

    SciTech Connect

    Proctor, A.E.

    1997-06-01

    Terrestrial radioactivity surrounding the Pilgrim Station Nuclear Power Plant was measured using aerial radiolog- ical survey techniques. The purpose of this survey was to document exposure rates near the plant and to identify unexpected, man-made radiation sources within the survey area. The surveyed area included land areas within a three-mile radius of the plant site. Data were acquired using an airborne detection system that employs sodium iodide, thallium-activated detectors. Exposure rate and photopeak counts were computed from these data and plotted on aerial photographs of the survey area. Several ground-based exposure measurements were made for comparison with the,aerial survey results. Exposure rates in areas surrounding the plant site varied from 6 to 10 microroentgens per hour, with exposure rates below 6 microroentgens per hour occurring over bogs and marshy areas. Man-made radiation was found to be higher than background levels at the plant site. Radation due to nitrogen-1 6, which is produced in the steam cycle of a boiling-water reactor, was the primaty source of activity found at the plant site. Cesium-137 activity at levels slightly above those expected from natural fallout was found at isolated locations inland from the plant site. No other detectable sources of man-made radioactivity were found.

  3. How endogenous plant cell-wall degradation mechanisms can help achieve higher efficiency in saccharification of biomass.

    PubMed

    Tavares, Eveline Q P; De Souza, Amanda P; Buckeridge, Marcos S

    2015-07-01

    Cell-wall recalcitrance to hydrolysis still represents one of the major bottlenecks for second-generation bioethanol production. This occurs despite the development of pre-treatments, the prospect of new enzymes, and the production of transgenic plants with less-recalcitrant cell walls. Recalcitrance, which is the intrinsic resistance to breakdown imposed by polymer assembly, is the result of inherent limitations in its three domains. These consist of: (i) porosity, associated with a pectin matrix impairing trafficking through the wall; (ii) the glycomic code, which refers to the fine-structural emergent complexity of cell-wall polymers that are unique to cells, tissues, and species; and (iii) cellulose crystallinity, which refers to the organization in micro- and/or macrofibrils. One way to circumvent recalcitrance could be by following cell-wall hydrolysis strategies underlying plant endogenous mechanisms that are optimized to precisely modify cell walls in planta. Thus, the cell-wall degradation that occurs during fruit ripening, abscission, storage cell-wall mobilization, and aerenchyma formation are reviewed in order to highlight how plants deal with recalcitrance and which are the routes to couple prospective enzymes and cocktail designs with cell-wall features. The manipulation of key enzyme levels in planta can help achieving biologically pre-treated walls (i.e. less recalcitrant) before plants are harvested for bioethanol production. This may be helpful in decreasing the costs associated with producing bioethanol from biomass. PMID:25922489

  4. Folk phytotherapeutical plants from Maratea area (Basilicata, Italy).

    PubMed

    Guarrera, Paolo Maria; Salerno, Giovanni; Caneva, Giulia

    2005-07-14

    Field ethnobotanical survey was undertaken for the period of 2002-2003 in the Tyrrhenian part of the Basilicata region of southern Italy. Data of 56 species of plants belonging to 29 families where gathered through interviews; among the species, 47 are used in human therapy, 6 as insect repellents, 15 in veterinary medicine, 1 for its ichthyotoxic properties and 3 for magic therapeutic purposes. The most important findings in ethnomedicine relate to Nasturtium officinale (renal colic, liver diseases), Foeniculum vulgare subsp. piperitum (mouth ulcers), Leopoldia comosa (toothache, headache), Micromeria graeca subsp. graeca (coughs) and Ceterach officinarum (malaria), while in the ethnoveterinary field, we have Pteridium aquilinum (wolf bites) and Spartium junceum (fractures of animal limbs). PMID:15878246

  5. Comparing Background and Recent Erosion Rates in Degraded Areas of Southeastern Brazil

    NASA Astrophysics Data System (ADS)

    Fernandes, N.; Bierman, P. R.; Sosa-Gonzalez, V.; Rood, D. H.; Fontes, R. L.; Santos, A. C.; Godoy, J. M.; Bhering, S.

    2014-12-01

    Soil erosion is a major problem in northwestern Rio de Janeiro State where, during the last three centuries, major land-use changes took place, associated with the replacement of the original rainforest by agriculture and grazing. The combination of steep hillslopes, erodible soils, sparse vegetation, natural and human-induced fires, as well as downslope ploughing, led to an increase in surface runoff and surface erosion on soil-mantled hillslopes; together, these actions and responses caused a decline in soil productivity. In order to estimate changes in erosion rates over time, we compared erosion rates measured at different spatial and temporal scales, both background (natural) and short-term (human-induced during last few decades). Background long-term erosion rates were measured using in-situ produced cosmogenic 10Be in the sand fraction quartz of active river channel sediment in four basins in the northwestern portion of Rio de Janeiro State. In these basins, average annual precipitation varies from 1,200 to 1,300 mm, while drainage areas vary from 15 to 7,200 km2. Short-term erosion rates were measured in one of these basins from fallout 210Pb in soil samples collected along a hillslope transect located in an abandoned agriculture field. In this transect, 190 undisturbed soil samples (three replicates) were collected from the surface to 0.50 m depth (5 cm vertical intervals) in six soil pits. 10Be average background, basin-wide, erosion rates in the area are ~ 13 m/My; over the last decades, time-integrated (210Pb) average hillslope erosion rates are around 1450 m/Myr, with maximum values at the steepest portion of convex hillslopes of about 2000 m/Myr. These results suggest that recent hillslope erosion rates are about 2 orders of magnitude above background rates of sediment generation integrated over many millennia. This unsustainable rate of soil loss has severely decreased soil productivity eventually leading to the abandonment of farming activities in

  6. Chlorinated Hydrocarbon Degradation in Plants: Mechanisms and Enhancement of Phytoremediation of Groundwater Contamination

    SciTech Connect

    Strand, Stuart E.

    2002-06-01

    Several varieties of transgenic poplar containing cytochrome P-450 2E1 have been constructed and are undergoing tests. Strategies for improving public acceptance and safety of transgenic poplar for chlorinated hydrocarbon phytoremediation are being developed. We have discovered a unique rhizobium species that lives within the stems of poplar and we are investigating whether this bacterium contributes nitrogen fixed from the air to the plant and whether this endophyte could be used to introduce genes into poplar. Studies of the production of chloride ion from TCE have shown that our present P-450 constructs did not produce chloride more rapidly than wild type plants. Follow-up studies will determine if there are other rate limiting downstream steps in TCE metabolism in plants. Studies of the metabolism of carbon tetrachloride in poplar cells have provided evidence that the native plant metabolism is due to the activity of oxidative enzymes similar to the mammalian cytochrome P-450 2E1.

  7. Comparative plant uptake and microbial degradation of trichloroethylene in the rhizospheres of five plant species-- implications for bioremediation of contaminated surface soils

    SciTech Connect

    Anderson, T.A.; Walton, B.T.

    1992-01-01

    The objective of this study was to collect data that would provide a foundation for the concept of using vegetation to enhance in situ bioremediation of contaminated surface soils. Soil and vegetation (Lespedeza cuneata, Paspalum notatum, Pinus taeda, and Solidago sp.) samples from the Miscellaneous Chemicals Basin (MCB) at the Savannah River Site were used in tests to identify critical plant and microbiological variables affecting the fate of trichloroethylene (TCE) in the root zone. Microbiological assays including phospholipid acid analyses, and {sup 14}C-acetate incorporation were conducted to elucidate differences in rhizosphere and nonvegetated soil microbial communities from the MCB. The microbial activity, biomass, and degradation of TCE in rhizosphere soils were significantly greater than corresponding nonvegetated soils. Vegetation had a positive effect on microbial degradation of {sup 14}C-TCE in whole-plant experiments. Soils from the MCB containing Lespedeza cuneata, Pinus taeda, and Glycine max mineralized greater than 25% of the {sup 14}C- TCE added compared with less than 20% in nonvegetated soils. Collectively, these results provide evidence for the positive role of vegetation in enhancing biodegradation.

  8. Engineering a catabolic pathway in plants for the degradation of 1,2-dichloroethane.

    PubMed

    Mena-Benitez, Gilda L; Gandia-Herrero, Fernando; Graham, Stuart; Larson, Tony R; McQueen-Mason, Simon J; French, Christopher E; Rylott, Elizabeth L; Bruce, Neil C

    2008-07-01

    Plants are increasingly being employed to clean up environmental pollutants such as heavy metals; however, a major limitation of phytoremediation is the inability of plants to mineralize most organic pollutants. A key component of organic pollutants is halogenated aliphatic compounds that include 1,2-dichloroethane (1,2-DCA). Although plants lack the enzymatic activity required to metabolize this compound, two bacterial enzymes, haloalkane dehalogenase (DhlA) and haloacid dehalogenase (DhlB) from the bacterium Xanthobacter autotrophicus GJ10, have the ability to dehalogenate a range of halogenated aliphatics, including 1,2-DCA. We have engineered the dhlA and dhlB genes into tobacco (Nicotiana tabacum 'Xanthi') plants and used 1,2-DCA as a model substrate to demonstrate the ability of the transgenic tobacco to remediate a range of halogenated, aliphatic hydrocarbons. DhlA converts 1,2-DCA to 2-chloroethanol, which is then metabolized to the phytotoxic 2-chloroacetaldehyde, then chloroacetic acid, by endogenous plant alcohol dehydrogenase and aldehyde dehydrogenase activities, respectively. Chloroacetic acid is dehalogenated by DhlB to produce the glyoxylate cycle intermediate glycolate. Plants expressing only DhlA produced phytotoxic levels of chlorinated intermediates and died, while plants expressing DhlA together with DhlB thrived at levels of 1,2-DCA that were toxic to DhlA-expressing plants. This represents a significant advance in the development of a low-cost phytoremediation approach toward the clean-up of halogenated organic pollutants from contaminated soil and groundwater. PMID:18467461

  9. Operation and Maintenance Manual for the Central Facilities Area Sewage Treatment Plant

    SciTech Connect

    Norm Stanley

    2011-02-01

    This Operation and Maintenance Manual lists operator and management responsibilities, permit standards, general operating procedures, maintenance requirements and monitoring methods for the Sewage Treatment Plant at the Central Facilities Area at the Idaho National Laboratory. The manual is required by the Municipal Wastewater Reuse Permit (LA-000141-03) the sewage treatment plant.

  10. ARCHITECTURAL FLOOR PLAN OF OPERATING AREA HOT PILOT PLANT (CPP640). ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    ARCHITECTURAL FLOOR PLAN OF OPERATING AREA HOT PILOT PLANT (CPP-640). INL DRAWING NUMBER 200-0640-00-279-111678. ALTERNATE ID NUMBER 8952-CPP-640-A-1. - Idaho National Engineering Laboratory, Idaho Chemical Processing Plant, Fuel Reprocessing Complex, Scoville, Butte County, ID

  11. Discrimination of planting area of white peach based near-infrared spectra and chemometrics methods

    NASA Astrophysics Data System (ADS)

    Fu, Xiaping; Ying, Yibin; Zhou, Ying; Xu, Huirong; Xie, Lijuan; Jiang, Xuesong

    2007-09-01

    White peach is a famous peach variety for its super-quality and high economic benefit. It is originally planted in Yuandong Villiage, Jinhua County, Zhejiang province. By now, it has been planted in many other places in southeast of China. However, peaches from different planting areas have dissimilar quality and taste, which result in different selling price. The objective of this research was to discriminate peaches from different planting areas by using near-infrared (NIR) spectra and chemometrics methods. Diffuse reflectance spectra were collected by a fiber spectrometer in the range of 800-2500 nm. Discriminant analysis (DA), soft independent modeling of class analogy (SIMCA), and discriminant partial least square regression (DPLS) methods were employed to classify the peaches from three planting areas 'Jinhua', 'Wuyi', and 'Yongkang' of Zhejiang province. 360 samples were used in this study, 120 samples per planting area. The classifying correctness were above 92% for both DA and SIMCA mdoels. And the result of DPLS model was slightly better. By using DPLS method, two 'Jinhua' peaches, three 'Wuyi' peaches, and three 'Yongkang' peaches were misclassified, the accruacy was above 95%. The results of this study indicate that the three chemometrics methods DA, SIMCA, and DPLS are effective for discriminating peaches from different planting areas based on NIR spectroscopy.

  12. Impact of grazing and life forms interactions on plant communities in arid areas

    NASA Astrophysics Data System (ADS)

    Alhamad, Mohammad Noor

    2015-04-01

    community productivity. The experimental defoliation exerted a pronounced effect on plant productivity and modified the nature of interaction between annual grasses and other growth forms. These mechanisms may explain the ability of Avena and Hordeum species to form persistent annual climax grasslands in semi-arid rangelands. These findings may suggest that Avena and Hordeum species may be used in revegetating degraded arid areas

  13. Amine-degradation products play no part in corrosion at gas-sweetening plants

    SciTech Connect

    Blanc, C.; Grall, M.; Demarais, G.

    1982-11-15

    Gas-sweetening units using diethanolamine (DEA) and methyldiethanolamine (MDEA) are occasionally subject to corrosion. Discounting the basic degradation products of DEA as the cause, researchers (1) confirmed the presence of formic, oxalic, and acetic acids in used amine solutions, (2) defined oxygen's role in forming these carboxylic acids, and (3) demonstrated that the acid contents of different units are about the same order of magnitude for both DEA and MDEA. In most cases, oxygen can be easily excluded from gas-treating units, especially in storage tanks, thereby limiting the formation of acid products.

  14. Chlorinated Hydrocarbon Degradation in Plants: Mechanisms and Enhancement of Phytoremediation of Groundwater Contamination

    SciTech Connect

    Stuart Strand

    2004-09-27

    The research objectives for this report are: (1) Transform poplar and other tree species to extend and optimize chlorinated hydrocarbon (CHC) oxidative activities. (2) Determine the mechanisms of CHC oxidation in plants. (3) Isolate the genes responsible for CHC oxidation in plants. We have made significant progress toward an understanding of the biochemical mechanism of CHC transformation native to wild-type poplar. We have identified chloral, trichloroethanol, trichloroacetic acid, and dichloroacetic acid as products of TCE metabolism in poplar plants and in tissue cultures of poplar cells.(Newman et al. 1997; Newman et al. 1999) Use of radioactively labeled TCE showed that once taken up and transformed, most of the TCE was incorporated into plant tissue as a non-volatile, unextractable residue.(Shang et al. 2001; Shang and Gordon 2002) An assay for this transformation was developed and validated using TCE transformation by poplar suspension cells. Using this assay, it was shown that two different activities contribute to the fixation of TCE by poplar cells: one associated with cell walls and insoluble residues, the other associated with a high molecular weight, heat labile fraction of the cell extract, a fixation that was apparently catalyzed by plant enzymes.

  15. Mercury uptake and phytotoxicity in terrestrial plants grown naturally in the Gumuskoy (Kutahya) mining area, Turkey.

    PubMed

    Sasmaz, Merve; Akgül, Bunyamin; Yıldırım, Derya; Sasmaz, Ahmet

    2016-01-01

    This study investigated mercury (Hg) uptake and transport from the soil to different plant parts by documenting the distribution and accumulation of Hg in the roots and shoots of 12 terrestrial plant species, all of which grow naturally in surface soils of the Gumuskoy Pb-Ag mining area. Plant samples and their associated soils were collected and analyzed for Hg content by ICP-MS. Mean Hg values in the soils, roots, and shoots of all plants were 6.914, 460, and 206 µg kg(-1), respectively and lower than 1. The mean enrichment factors for the roots (ECR) and shoots (ECS) of these plants were 0.06 and 0.09, respectively and lower than 1. These results show that the roots of the studied plants prevented Hg from reaching the aerial parts of the plants. The mean translocation factor (TLF) was 1.29 and higher than 1. The mean TLF values indicated that all 12 plant species had the ability to transfer Hg from the roots to the shoots but that transfer was more efficient in plants with higher ECR and ECS. Therefore, these plants could be useful for the biomonitoring of environmental pollution and for rehabilitating areas contaminated by Hg. PMID:26114359

  16. Isolation and Characterization of Polycyclic Aromatic Hydrocarbon-Degrading Bacteria Associated with the Rhizosphere of Salt Marsh Plants

    PubMed Central

    Daane, L. L.; Harjono, I.; Zylstra, G. J.; Häggblom, M. M.

    2001-01-01

    study indicates that the rhizosphere of salt marsh plants contains a diverse population of PAH-degrading bacteria, and the use of plant-associated microorganisms has the potential for bioremediation of contaminated sediments. PMID:11375181

  17. Reabilitation of degraded area by erosion, using soil bioengineering techniques in Bacanga river basin, Sao Luis City - Maranhao State, Brazil.

    NASA Astrophysics Data System (ADS)

    Teixeira Guerra, A. J.; Rodrigues Bezerra, J. F.; da Mota Lima, L. D.; Silva Mendonça, J. K.; Vieira Souza, U. D.; Teixeira Guerra, T.

    2009-04-01

    The aim of this paper is to assess the stages of rehabilitation of a degraded site by erosion, in Salina/Sacavém district, São Luís City, considering geomorphologic characteristics and soil bioengineering techniques. This technique has been applied in different situations to rehabilitate degraded areas, with positive results from the use of biodegradable materials (e.g. vegetal fibres, wooden stakes and re-vegetation). These techniques stabilize the soil at low cost and improve the environment. Bioengineering involves the planned and strategic application of selected materials, involving biodegradable materials, often in combination with 'hard engineering' structures constructed from stone, concrete and steel. The settlement of São Luís was established in 1612 and has evolved in distinct phases. Rapid urban growth was associated with industrialization in the second half of the 18th Century. Rapid population and urban growth has intensified problems, compounded by poor planning and improper soil use. São Luís, like many other Brazilian cities, has experienced rapid population growth in recent decades, which has created a series of socio-economic and environmental problems, including accelerated soil erosion. Sacavém is one of these communities where natural and human factors contribute to the severe gully erosion. The local lithology is mainly Tertiary sandstones and, to a lesser extent, shales, argillites and siltstones, all of which belong to the Barreiras Formation. Weathering on these rocks produces erodible soils, including lithosols, latosols, concretionary red/yellow clay soils and concretionary plinthosols. Thus, erodible soils and regolith are subject to high erosion rates, especially on steeper slopes subject to additional human interventions. Furthermore, although regional slopes are quite gentle, there is localized high relative relief. Sacavém vegetation, in the gullied area, consists of brushwood. Secondary mixed forest and brushwood are the

  18. Metatranscriptomic discovery of plant biomass-degrading capacity from grass carp intestinal microbiomes.

    PubMed

    Wu, Shangong; Ren, Yi; Peng, Chun; Hao, Yaotong; Xiong, Fan; Wang, Guitang; Li, Wenxiang; Zou, Hong; Angert, Esther R

    2015-10-01

    Despite the economic importance of fish, the ecology and metabolic capacity of fish microbiomes are largely unknown. Here, we sequenced the metatranscriptome of the intestinal microbiota of grass carp, Ctenopharyngodon idellus, a freshwater herbivorous fish species. Our results confirmed previous work describing the bacterial composition of the microbiota at the phylum level as being dominated by Firmicutes, Fusobacteria, Proteobacteria and Bacteriodetes. Comparative transcriptomes of the microbiomes of fish fed with different experimental diets indicated that the bacterial transcriptomes are influenced by host diet. Although hydrolases and cellulosome-based systems predicted to be involved in degradation of the main chain of cellulose, xylan, mannan and pectin were identified, transcripts with glycoside hydrolase modules targeting the side chains of noncellulosic polysaccharides were more abundant. Predominant 'COG' (Clusters of Orthologous Group) categories in the intestinal microbiome included those for energy production and conversion, as well as carbohydrate and amino acid transport and metabolism. These results suggest that the grass carp intestinal microbiome functions in carbohydrate turnover and fermentation, which likely provides energy for both host and microbiota. Grass carp intestinal microbiome thus reflects its evolutionary adaption for harvesting nutrients for an herbivore with a high-throughput nutritional strategy that is not dominated by cellulose digestion but rather the degradation of intracellular polysaccharides. PMID:26362922

  19. The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger

    PubMed Central

    van Munster, Jolanda M.; Daly, Paul; Delmas, Stéphane; Pullan, Steven T.; Blythe, Martin J.; Malla, Sunir; Kokolski, Matthew; Noltorp, Emelie C.M.; Wennberg, Kristin; Fetherston, Richard; Beniston, Richard; Yu, Xiaolan; Dupree, Paul; Archer, David B.

    2014-01-01

    Fungi are an important source of enzymes for saccharification of plant polysaccharides and production of biofuels. Understanding of the regulation and induction of expression of genes encoding these enzymes is still incomplete. To explore the induction mechanism, we analysed the response of the industrially important fungus Aspergillus niger to wheat straw, with a focus on events occurring shortly after exposure to the substrate. RNA sequencing showed that the transcriptional response after 6 h of exposure to wheat straw was very different from the response at 24 h of exposure to the same substrate. For example, less than half of the genes encoding carbohydrate active enzymes that were induced after 24 h of exposure to wheat straw, were also induced after 6 h exposure. Importantly, over a third of the genes induced after 6 h of exposure to wheat straw were also induced during 6 h of carbon starvation, indicating that carbon starvation is probably an important factor in the early response to wheat straw. The up-regulation of the expression of a high number of genes encoding CAZymes that are active on plant-derived carbohydrates during early carbon starvation suggests that these enzymes could be involved in a scouting role during starvation, releasing inducing sugars from complex plant polysaccharides. We show, using proteomics, that carbon-starved cultures indeed release CAZymes with predicted activity on plant polysaccharides. Analysis of the enzymatic activity and the reaction products, indicates that these proteins are enzymes that can degrade various plant polysaccharides to generate both known, as well as potentially new, inducers of CAZymes. PMID:24792495

  20. The evolution of biocrusts after their removal: gaining insights for restoring degraded areas

    NASA Astrophysics Data System (ADS)

    Rodriguez-Caballero, Emilio; Chamizo, Sonia; Cantón, Yolanda

    2015-04-01

    Biocrusts, as the primary colonizers in a diverse range of terrestrial habitats, are key contributors in the sustenance of fertility. They are known to play crucial roles in ecosystems: regulating soil hydrology, preventing erosion, and supplying large amounts of carbon and nitrogen to soils. These arguments can enable one to erect plausible alternatives using these engineers to ecosystem functions restoration based on their important roles on water limited environments. In this work we examine the recovery of soil by biocrusts after disturbance and the concomitant evolution of soil properties as an opportunity to explore the potential of biocrust rehabilitation as a tool to return disturbed ecosystems to a desirable trajectory. This study was performed in the Tabernas Desert (Almería, SE Spain), a badlands catchment with silty loam soils, where we are controlling the changes in different soil properties after biocrust removal in soils previously colonized by cyanobacteria- and lichen- biocrusts. Two sets of plots (8 small plots each) were monitored: one in which the biocrust was removed in Jan 2011, and another where the biocrust was removed in Nov 2007. Every plot was divided into two areas: one half was used for soil sampling and the other half was kept intact to periodically measure roughness and the spectral response. Every six months, samples of the first 0.5 cm of soil were collected and organic carbon (OC), total C, total N and chlorophyll (a and b) content were determined. Surface roughness was measured every year using a high resolution laser scanner, and spectral measurements obtained by a field spectroradiometer were taken to determine absorptions by pigments. Our results show, that just after biocrust removal, the content in total C and N, as well as roughness, decreased as consequence of the loss of loose soil particles by runoff following BSC removal. On the contrary, total chlorophyll content increases immediately after the biocrust rehabilitation

  1. Evaluation of areas prepared for planting using LANDSAT data. M.S. Thesis; [Ribeirao Preto, Brazil

    NASA Technical Reports Server (NTRS)

    Parada, N. D. J. (Principal Investigator); Deassuncao, G. V.; Duarte, V.

    1983-01-01

    Three different algorithms (SINGLE-CELL, MAXVER and MEDIA K) were used to automatically interpret data from LANDSAT observations of an area of Ribeirao Preto, Brazil. Photographic transparencies were obtained, projected and visually interpreted. The results show that: (1) the MAXVER algorithm presented a better classification performance; (2) verification of the changes in cultivated areas using data from the three different acquisition dates was possible; (3) the water bodies, degraded lands, urban areas, and fallow fields were frequently mistaken by cultivated soils; and (4) the use of projected photographic transparencies furnished satisfactory results, besides reducing the time spent on the image-100 system.

  2. A microplate assay for quantitative evaluation of plant cell wall degrading enzymes

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Developing enzyme cocktails for cellulosic biomass hydrolysis complementary to current cellulase systems is a critical step needed for economically viable biofuels production. Plant pathogenic fungi are a largely untapped resource in which to prospect for novel hydrolytic enzymes for biomass convers...

  3. Role of soil adsorption and microbial degradation on dissipation of mesotrione in plant available soil water

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Mesotrione is a carotenoid biosynthesis-inhibiting herbicide labeled for pre-emergence and post emergent weed control in corn production. Understanding the factors that influence the dissipation of mesotrione in soil and in the plant available water (PAW) is important for both the environmental fat...

  4. Plant volatiles in a polluted atmosphere: stress response and signal degradation

    PubMed Central

    Blande, James D.; Holopainen, Jarmo K.; Niinemets, Ülo

    2014-01-01

    Plants emit a plethora of volatile organic compounds, which provide detailed information on the physiological condition of emitters. Volatiles induced by herbivore-feeding are among the best studied plant responses to stress and may constitute an informative message to the surrounding community and function in the process of plant defence. However, under natural conditions, plants are potentially exposed to multiple concurrent stresses, which can have complex effects on the volatile emissions. Atmospheric pollutants are an important facet of the abiotic environment and can impinge on a plant’s volatile-mediated defences in multiple ways at multiple temporal scales. They can exert changes in volatile emissions through oxidative stress, as is the case with ozone pollution. They may also react with volatiles in the atmosphere; such is the case for ozone, nitrogen oxides, hydroxyl radicals and other oxidizing atmospheric species. These reactions result in breakdown products, which may themselves be perceived by community members as informative signals. In this review we demonstrate the complex interplay between stress, emitted signals and modification in signal strength and composition by the atmosphere, collectively determining the responses of the biotic community to elicited signals. PMID:24738697

  5. An insect herbivore microbiome with high plant biomass-degrading capacity

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Herbivores can gain indirect access to recalcitrant carbon present in plant cell walls through symbiotic associations with lignocellulolytic microbes. A paradigmatic example is the leaf-cutter ant (Tribe: Attini), which uses fresh leaves to cultivate a fungus for food in specialized gardens. Using a...

  6. Canola meals from different production plants differ in ruminal protein degradability

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Lactation trials have shown that production and N efficiency were improved when dietary soybean meal was replaced with equal crude protein (CP) from canola meal. Three or four canola meal samples were collected from each of 12 Canadian production plants (total = 37), and analyzed for differences in ...

  7. Draft Genome Sequence of Triclosan-Degrading Bacterium Sphingomonas sp. Strain YL-JM2C, Isolated from a Wastewater Treatment Plant in China

    PubMed Central

    Mulla, Sikandar I.; Xu, Haili

    2015-01-01

    Sphingomonas sp. strain YL-JM2C was isolated from a wastewater treatment plant in Xiamen, China, by enrichment on triclosan. The bacterium is of special interest because of its ability to degrade triclosan. Here, we present a draft genome sequence of the microorganism and its functional annotation. To our best knowledge, this is the first report of a draft genome sequence of a triclosan-degrading bacterium PMID:26044437

  8. Natural and planted flora of the log mountain surface - mined demonstration area, Bell County, Kentucky

    SciTech Connect

    Thompson, R.L.; Wade, G.L.; Straw, R.A.

    1996-12-31

    A descriptive study of the naturally invading and planted flora was conducted during 1984-1985 on a 14- and 21-year-old contour surface mine the 14.2 ha Log Mountain Demonstration Area (LMDA), in Bell County, Kentucky. Six habitats are designated from areas created from coal mining; the 1963 bench, 1970 bench, bench highwalls, mine outslopes, mine seeps, and coal haul-telephone microwave tower road. Twenty-four of 25 woody and herbaceous species (11 indigenous, 13 non-indigenous) have persisted from plantings by personnel of the Northeastern Forest Experiment Station, USDA Forest Service. We recommend 11 native and exotic woody and herbaceous species for planting on coal surface-mined areas. An annotated list of vascular plants comprises 360 taxa (286 indigenous, 74 non-indigenous) in 224 genera from 82 families. Taxa consist of 1 Lycopodiophyta, 1 Equisetophyta, 8 Polypodiophyta, 7 Pinophyta, and 343 Magnoliophyta. The most species-rich families are the Asteraceae (64), Poaceae (39), Fabaceae (20), Cyperaceae (16), Rosaceae (13), and Lamiaceae (11). A total of 155 Bell County distribution records were documented. Three threatened Kentucky species (Gentiana decora, Liparis loeselii, Silene ovata) were present in refugial habitats created by surface mining. The high species richness has resulted from native and naturalized invading species from the environs, native and exotic planted species, and species from the remnant seed bank. Forest vegetation is a complex mosaic of natural and semi-natural plant communities on the unplanted and planted areas of LMDA.

  9. Restoration of Degraded Soil in the Nanmangalam Reserve Forest with Native Tree Species: Effect of Indigenous Plant Growth-Promoting Bacteria

    PubMed Central

    Ramachandran, Andimuthu; Radhapriya, Parthasarathy

    2016-01-01

    Restoration of a highly degraded forest, which had lost its natural capacity for regeneration, was attempted in the Nanmangalam Reserve Forest in Eastern Ghats of India. In field experiment, 12 native tree species were planted. The restoration included inoculation with a consortium of 5 native plant growth-promoting bacteria (PGPB), with the addition of small amounts of compost and a chemical fertilizer (NPK). The experimental fields were maintained for 1080 days. The growth and biomass varied depending on the plant species. All native plants responded well to the supplementation with the native PGPB. The plants such as Pongamia pinnata, Tamarindus indica, Gmelina arborea, Wrightia tinctoria, Syzygium cumini, Albizia lebbeck, Terminalia bellirica, and Azadirachta indica performed well in the native soil. This study demonstrated, by using native trees and PGPB, a possibility to restore the degraded forest. PMID:27195310

  10. Restoration of Degraded Soil in the Nanmangalam Reserve Forest with Native Tree Species: Effect of Indigenous Plant Growth-Promoting Bacteria.

    PubMed

    Ramachandran, Andimuthu; Radhapriya, Parthasarathy

    2016-01-01

    Restoration of a highly degraded forest, which had lost its natural capacity for regeneration, was attempted in the Nanmangalam Reserve Forest in Eastern Ghats of India. In field experiment, 12 native tree species were planted. The restoration included inoculation with a consortium of 5 native plant growth-promoting bacteria (PGPB), with the addition of small amounts of compost and a chemical fertilizer (NPK). The experimental fields were maintained for 1080 days. The growth and biomass varied depending on the plant species. All native plants responded well to the supplementation with the native PGPB. The plants such as Pongamia pinnata, Tamarindus indica, Gmelina arborea, Wrightia tinctoria, Syzygium cumini, Albizia lebbeck, Terminalia bellirica, and Azadirachta indica performed well in the native soil. This study demonstrated, by using native trees and PGPB, a possibility to restore the degraded forest. PMID:27195310

  11. Molecular docking and dynamics simulation analyses unraveling the differential enzymatic catalysis by plant and fungal laccases with respect to lignin biosynthesis and degradation.

    PubMed

    Awasthi, Manika; Jaiswal, Nivedita; Singh, Swati; Pandey, Veda P; Dwivedi, Upendra N

    2015-09-01

    Laccase, widely distributed in bacteria, fungi, and plants, catalyzes the oxidation of wide range of compounds. With regards to one of the important physiological functions, plant laccases are considered to catalyze lignin biosynthesis while fungal laccases are considered for lignin degradation. The present study was undertaken to explain this dual function of laccases using in-silico molecular docking and dynamics simulation approaches. Modeling and superimposition analyses of one each representative of plant and fungal laccases, namely, Populus trichocarpa and Trametes versicolor, respectively, revealed low level of similarity in the folding of two laccases at 3D levels. Docking analyses revealed significantly higher binding efficiency for lignin model compounds, in proportion to their size, for fungal laccase as compared to that of plant laccase. Residues interacting with the model compounds at the respective enzyme active sites were found to be in conformity with their role in lignin biosynthesis and degradation. Molecular dynamics simulation analyses for the stability of docked complexes of plant and fungal laccases with lignin model compounds revealed that tetrameric lignin model compound remains attached to the active site of fungal laccase throughout the simulation period, while it protrudes outwards from the active site of plant laccase. Stability of these complexes was further analyzed on the basis of binding energy which revealed significantly higher stability of fungal laccase with tetrameric compound than that of plant. The overall data suggested a situation favorable for the degradation of lignin polymer by fungal laccase while its synthesis by plant laccase. PMID:25301391

  12. Rice-planted area extraction from multi-temporal remote sensing images

    NASA Astrophysics Data System (ADS)

    Shen, Jinxiang; Zhang, Hong; Ma, Yanmei

    2015-12-01

    Rice-planted area and production monitoring has significance for governments to formulate some food related policy. Remote sensing has an obvious advantage for the rice monitoring. As for the rice-planted area, the special growth raw shows different feature in the remote sensing image. In this paper, the multi-temporal Landsat-8 OLI image of Menghun and Mengzhe town in Xishuangbanna autonomous prefecture where planting a large number of rice was used as the test data, the corresponding changes of the difference between NDVI and NDWI was used as the diagnostic feature, and the SAM classification approach was introduced to extract rice-planted area. The experiments shows that the approach could acquire more than 95% of the extraction accuracy.

  13. Research subjects for analytical estimation of core degradation at Fukushima-Daiichi nuclear power plant

    SciTech Connect

    Nagase, F.; Ishikawa, J.; Kurata, M.; Yoshida, H.; Kaji, Y.; Shibamoto, Y.; Amaya, M; Okumura, K.; Katsuyama, J.

    2013-07-01

    Estimation of the accident progress and status inside the pressure vessels (RPV) and primary containment vessels (PCV) is required for appropriate conductance of decommissioning in the Fukushima-Daiichi NPP. For that, it is necessary to obtain additional experimental data and revised models for the estimation using computer codes with increased accuracies. The Japan Atomic Energy Agency (JAEA) has selected phenomena to be reviewed and developed, considering previously obtained information, conditions specific to the Fukushima-Daiichi NPP accident, and recent progress of experimental and analytical technologies. As a result, research and development items have been picked up in terms of thermal-hydraulic behavior in the RPV and PCV, progression of fuel bundle degradation, failure of the lower head of RPV, and analysis of the accident. This paper introduces the selected phenomena to be reviewed and developed, research plans and recent results from the JAEA's corresponding research programs. (authors)

  14. Assessment of potential indigenous plant species for the phytoremediation of arsenic-contaminated areas of Bangladesh.

    PubMed

    Mahmud, Rezwanul; Inoue, Naoto; Kasajima, Shin-Ya; Shaheen, Riffat

    2008-01-01

    Soil and water contaminated with arsenic (As) pose a major environmental and human health problem in Bangladesh. Phytoremediation, a plant-based technology, may provide an economically viable solution for remediating the As-polluted sites. The use of indigenous plants with a high tolerance and accumulation capacity for As may be a very convenient approach for phytoremediation. To assess the potential of native plant species for phytoremediation, plant and soil samples were collected from four As-contaminated (groundwater) districts in Bangladesh. The main criteria used for selecting plants for phytoremediation were high bioconcentration factors (BCFs) and translocation factors (TFs) of As. From the results of a screening of 49 plant species belonging to 29 families, only one species of fern (Dryopteris filix-mas), three herbs (Blumea lacera, Mikania cordata, and Ageratum conyzoides), and two shrubs (Clerodendrum trichotomum and Ricinus communis) were found to be suitable for phytoremediation. Arsenic bioconcentration and translocation factors > 1 suggest that these plants are As-tolerant accumulators with potential use in phytoextraction. Three floating plants (Eichhornia crassipes, Spirodela polyrhiza, and Azolla pinnata) and a common wetland weed (Monochoria vaginalis) also showed high BCF and TF values; therefore, these plants may be promising candidates for cleaningup As-contaminated surface water and wetland areas. The BCF of Oryza sativa, obtained from As-contaminated districts was > 1, which highlights possible food-chain transfer issues for As-contaminated areas in Bangladesh. PMID:18709925

  15. Discovery of LPMO activity on hemicelluloses shows the importance of oxidative processes in plant cell wall degradation.

    PubMed

    Agger, Jane W; Isaksen, Trine; Várnai, Anikó; Vidal-Melgosa, Silvia; Willats, William G T; Ludwig, Roland; Horn, Svein J; Eijsink, Vincent G H; Westereng, Bjørge

    2014-04-29

    The recently discovered lytic polysaccharide monooxygenases (LPMOs) are known to carry out oxidative cleavage of glycoside bonds in chitin and cellulose, thus boosting the activity of well-known hydrolytic depolymerizing enzymes. Because biomass-degrading microorganisms tend to produce a plethora of LPMOs, and considering the complexity and copolymeric nature of the plant cell wall, it has been speculated that some LPMOs may act on other substrates, in particular the hemicelluloses that tether to cellulose microfibrils. We demonstrate that an LPMO from Neurospora crassa, NcLPMO9C, indeed degrades various hemicelluloses, in particular xyloglucan. This activity was discovered using a glycan microarray-based screening method for detection of substrate specificities of carbohydrate-active enzymes, and further explored using defined oligomeric hemicelluloses, isolated polymeric hemicelluloses and cell walls. Products generated by NcLPMO9C were analyzed using high performance anion exchange chromatography and multidimensional mass spectrometry. We show that NcLPMO9C generates oxidized products from a variety of substrates and that its product profile differs from those of hydrolytic enzymes acting on the same substrates. The enzyme particularly acts on the glucose backbone of xyloglucan, accepting various substitutions (xylose, galactose) in almost all positions. Because the attachment of xyloglucan to cellulose hampers depolymerization of the latter, it is possible that the beneficial effect of the LPMOs that are present in current commercial cellulase mixtures in part is due to hitherto undetected LPMO activities on recalcitrant hemicellulose structures. PMID:24733907

  16. Soil-Derived Microbial Consortia Enriched with Different Plant Biomass Reveal Distinct Players Acting in Lignocellulose Degradation.

    PubMed

    de Lima Brossi, Maria Julia; Jiménez, Diego Javier; Cortes-Tolalpa, Larisa; van Elsas, Jan Dirk

    2016-04-01

    Here, we investigated how different plant biomass, and-for one substrate-pH, drive the composition of degrader microbial consortia. We bred such consortia from forest soil, incubated along nine aerobic sequential - batch enrichments with wheat straw (WS1, pH 7.2; WS2, pH 9.0), switchgrass (SG, pH 7.2), and corn stover (CS, pH 7.2) as carbon sources. Lignocellulosic compounds (lignin, cellulose and xylan) were best degraded in treatment SG, followed by CS, WS1 and WS2. In terms of composition, the consortia became relatively stable after transfers 4 to 6, as evidenced by PCR-DGGE profiles obtained from each consortium DNA. The final consortia differed by ~40 % (bacteria) and ~60 % (fungi) across treatments. A 'core' community represented by 5/16 (bacteria) and 3/14 (fungi) bands was discerned, next to a variable part. The composition of the final microbial consortia was strongly driven by the substrate, as taxonomically-diverse consortia appeared in the different substrate treatments, but not in the (WS) different pH one. Biodegradative strains affiliated to Sphingobacterium kitahiroshimense, Raoultella terrigena, Pseudomonas putida, Stenotrophomonas rhizophila (bacteria), Coniochaeta ligniaria and Acremonium sp. (fungi) were recovered in at least three treatments, whereas strains affiliated to Delftia tsuruhatensis, Paenibacillus xylanexedens, Sanguibacter inulus and Comamonas jiangduensis were treatment-specific. PMID:26487437

  17. Discovery of LPMO activity on hemicelluloses shows the importance of oxidative processes in plant cell wall degradation

    PubMed Central

    Agger, Jane W.; Isaksen, Trine; Várnai, Anikó; Vidal-Melgosa, Silvia; Willats, William G. T.; Ludwig, Roland; Horn, Svein J.; Eijsink, Vincent G. H.; Westereng, Bjørge

    2014-01-01

    The recently discovered lytic polysaccharide monooxygenases (LPMOs) are known to carry out oxidative cleavage of glycoside bonds in chitin and cellulose, thus boosting the activity of well-known hydrolytic depolymerizing enzymes. Because biomass-degrading microorganisms tend to produce a plethora of LPMOs, and considering the complexity and copolymeric nature of the plant cell wall, it has been speculated that some LPMOs may act on other substrates, in particular the hemicelluloses that tether to cellulose microfibrils. We demonstrate that an LPMO from Neurospora crassa, NcLPMO9C, indeed degrades various hemicelluloses, in particular xyloglucan. This activity was discovered using a glycan microarray-based screening method for detection of substrate specificities of carbohydrate-active enzymes, and further explored using defined oligomeric hemicelluloses, isolated polymeric hemicelluloses and cell walls. Products generated by NcLPMO9C were analyzed using high performance anion exchange chromatography and multidimensional mass spectrometry. We show that NcLPMO9C generates oxidized products from a variety of substrates and that its product profile differs from those of hydrolytic enzymes acting on the same substrates. The enzyme particularly acts on the glucose backbone of xyloglucan, accepting various substitutions (xylose, galactose) in almost all positions. Because the attachment of xyloglucan to cellulose hampers depolymerization of the latter, it is possible that the beneficial effect of the LPMOs that are present in current commercial cellulase mixtures in part is due to hitherto undetected LPMO activities on recalcitrant hemicellulose structures. PMID:24733907

  18. Plant invasions in protected areas of tropical pacific islands, with special reference to Hawaii

    USGS Publications Warehouse

    R. Flint Hughes; Jean-Yves Meyer, jean-yves.meyer@recherche.gov.pf; Loope, Lloyd L.

    2013-01-01

    Isolated tropical islands are notoriously vulnerable to plant invasions. Serious management for protection of native biodiversity in Hawaii began in the 1970s, arguably at Hawaii Volcanoes National Park. Concerted alien plant management began there in the 1980s and has in a sense become a model for protected areas throughout Hawaii and Pacific Island countries and territories. We review the relative successes of their strategies and touch upon how their experience has been applied elsewhere. Protected areas in Hawaii are fortunate in having relatively good resources for addressing plant invasions, but many invasions remain intractable, and invasions from outside the boundaries continue from a highly globalised society with a penchant for horticultural novelty. There are likely few efforts in most Pacific Islands to combat alien plant invasions in protected areas, but such areas may often have fewer plant invasions as a result of their relative remoteness and/or socio-economic development status. The greatest current needs for protected areas in this region may be for establishment of yet more protected areas, for better resources to combat invasions in Pacific Island countries and territories, for more effective control methods including biological control programme to contain intractable species, and for meaningful efforts to address prevention and early detection of potential new invaders.

  19. Grazing intensifies degradation of a Tibetan Plateau alpine meadow through plant-pest interaction.

    PubMed

    Cao, Hui; Zhao, Xinquan; Wang, Shiping; Zhao, Liang; Duan, Jichuang; Zhang, Zhenhua; Ge, Shidong; Zhu, Xiaoxue

    2015-06-01

    Understanding the plant-pest interaction under warming with grazing conditions is critical to predict the response of alpine meadow to future climate change. We investigated the effects of experimental warming and grazing on the interaction between plants and the grassland caterpillar Gynaephora menyuanensis in an alpine meadow on the Tibetan Plateau in 2010 and 2011. Our results showed that grazing significantly increased nitrogen concentration in graminoids and sward openness with a lower sward height, sward coverage, and plant litter mass in the community. Grazing significantly increased G. menyuanensis body size and potential fecundity in 2010. The increases in female body size were about twofold greater than in males. In addition, grazing significantly increased G. menyuanensis density and its negative effects on aboveground biomass and graminoid coverage in 2011. We found that G. menyuanensis body size was significantly positively correlated with nitrogen concentration in graminoids but negatively correlated with plant litter mass. Even though warming did not significantly increased G. menyuanensis performance and the negative effects of G. menyuanensis on alpine meadow, the increases in G. menyuanensis growth rate and its negative effect on aboveground biomass under the warming with grazing treatment were significantly higher than those under the no warming with grazing treatment. The positive effects of grazing on G. menyuanensis performance and its damage were exacerbated by the warming treatment. Our results suggest that the fitness of G. menyuanensis would increase under future warming with grazing conditions, thereby posing a greater risk to alpine meadow and livestock production. PMID:26120436

  20. Degradation and metabolism of tetrabromobisphenol A (TBBPA) in submerged soil and soil-plant systems.

    PubMed

    Sun, Feifei; Kolvenbach, Boris Alexander; Nastold, Peter; Jiang, Bingqi; Ji, Rong; Corvini, Philippe Francois-Xavier

    2014-12-16

    Contamination by tetrabromobisphenol A (TBBPA), the most widely used brominated flame retardant, is a matter of environmental concern. Here, we investigated the fate and metabolites of (14)C-TBBPA in a submerged soil with an anoxic-oxic interface and planted or not with rice (Oryza sativa) and reed (Phragmites australis) seedlings. In unplanted soil, TBBPA dissipation (half-life 20.8 days) was accompanied by mineralization (11.5% of initial TBBPA) and the substantial formation (60.8%) of bound residues. Twelve metabolites (10 in unplanted soil and 7 in planted soil) were formed via four interconnected pathways: oxidative skeletal cleavage, O-methylation, type II ipso-substitution, and reductive debromination. The presence of the seedlings strongly reduced (14)C-TBBPA mineralization and bound-residue formation and stimulated debromination and O-methylation. Considerable radioactivity accumulated in rice (21.3%) and reed (33.1%) seedlings, mainly on or in the roots. While TBBPA dissipation was hardly affected by the rice seedlings, it was strongly enhanced by the reed seedlings, greatly reducing the half-life (11.4 days) and increasing monomethyl TBBPA formation (11.3%). The impact of the interconnected aerobic and anaerobic transformation of TBBPA and wetland plants on the profile and dynamics of the metabolites should be considered in phytoremediation strategies and environmental risk assessments of TBBPA in submerged soils. PMID:25402269

  1. Species area relationships in mediterranean-climate plant communities

    USGS Publications Warehouse

    Keeley, J.E.; Fotheringham, C.J.

    2003-01-01

    SUMMARY: Polychlorinated biphenyls constitute a group of chlorine-bearing compounds of industrial origin that have permeated the natural environment throughout the world. Their chemical structure resembles that of some of the organochlorine pesticides. They are troublesome interferences in gas chromatographic analysis of these pesticides. Although methods have been developed to overcome analytical problems, measurements of quantity still are only approximate. Special studies in the United States, Netherlands, and Great Britain have traced PCB's to industrial effluent, but other possible sources have not been followed. Their use in paints, cartons, and insulating fluids suggests that environmental pollution may be from many different sources. PCB's are present in fish and wildlife in many countries of the world. Quantities are higher in animals living near industrial areas. PCB's build up in biological food chains with increases of tens to thousands of times from lower to higher organisms. Experimental studies have shown that PCB's have a toxicity to mallards, pheasants, bobwhite quail, coturnix quail, red-winged blackbirds, starlings, cowbirds, and grackles that is of the same order as the toxicity of DDE to these species. Overt signs of poisoning also are similar to those caused by compounds of the DDT group. Toxic effects of DDE and Aroclor 1254 to coturnix chicks were additive, but not synergistic. PCB's containing higher percentages of chlorine are more toxic to birds than those containing lower percentages. PCB's of foreign manufacture contained contaminants to an extent that greatly increased their toxicity Aroclor 1242. Statistical evaluations of the role that different chemicals may play in thinning of eggshells of brown pelicans show that DDE residues correlate better with shell thinning than do residues of dieldrin or PCB's. Studies of the effects of PCB's in the environment are as yet insufficient for well-rounded conclusions. The evidence available

  2. Past and present effectiveness of protected areas for conservation of naturally and anthropogenically rare plant species.

    PubMed

    Vellak, Ain; Tuvi, Eva-Liis; Reier, Ülle; Kalamees, Rein; Roosaluste, Elle; Zobel, Martin; Pärtel, Meelis

    2009-06-01

    The Global Strategy of Plant Conservation states that at least 60% of threatened plant species should be within protected areas. This goal has been met in some regions with long traditions of plant protection. We used gap analysis to explore how particular groups of species of conservation interest, representing different types of natural or anthropogenic rarity, have been covered by protected areas on a national scale in Estonia during the last 100 years. Species-accumulation curves indicated that plant species that are naturally rare (restricted global or local distribution, always small populations, or very rare habitat requirements) needed almost twice as many protected areas to reach the 60% target as plant species that are rare owing to lack of suitable management (species depending on grassland management, moderate forest disturbances, extensive traditional agriculture, or species potentially threatened by collecting). Temporal analysis of the establishment of protected areas suggested that grouping plant species according to the predominant cause of rarity accurately reflected the history of conservation decision making. Species found in very rare habitats have previously received special conservation attention; species dependent on traditional extensive agriculture have been largely ignored until recently. Legislative initiative and new nature-protection schemes (e.g., Natura 2000, network of protected areas in the European Union) have had a positive influence on all species groups. Consequently, the species groups needing similar action for their conservation are sensitive indicators of the effectiveness of protected-area networks. Different species groups, however, may not be uniformly conserved within protected areas, and all species groups should fulfill the target of 60% coverage within protected areas. PMID:19128324

  3. Combining endangered plants and animals as surrogates to identify priority conservation areas in Yunnan, China

    PubMed Central

    Yang, Feiling; Hu, Jinming; Wu, Ruidong

    2016-01-01

    Suitable surrogates are critical for identifying optimal priority conservation areas (PCAs) to protect regional biodiversity. This study explored the efficiency of using endangered plants and animals as surrogates for identifying PCAs at the county level in Yunnan, southwest China. We ran the Dobson algorithm under three surrogate scenarios at 75% and 100% conservation levels and identified four types of PCAs. Assessment of the protection efficiencies of the four types of PCAs showed that endangered plants had higher surrogacy values than endangered animals but that the two were not substitutable; coupled endangered plants and animals as surrogates yielded a higher surrogacy value than endangered plants or animals as surrogates; the plant-animal priority areas (PAPAs) was the optimal among the four types of PCAs for conserving both endangered plants and animals in Yunnan. PAPAs could well represent overall species diversity distribution patterns and overlap with critical biogeographical regions in Yunnan. Fourteen priority units in PAPAs should be urgently considered as optimizing Yunnan’s protected area system. The spatial pattern of PAPAs at the 100% conservation level could be conceptualized into three connected conservation belts, providing a valuable reference for optimizing the layout of the in situ protected area system in Yunnan. PMID:27538537

  4. Combining endangered plants and animals as surrogates to identify priority conservation areas in Yunnan, China.

    PubMed

    Yang, Feiling; Hu, Jinming; Wu, Ruidong

    2016-01-01

    Suitable surrogates are critical for identifying optimal priority conservation areas (PCAs) to protect regional biodiversity. This study explored the efficiency of using endangered plants and animals as surrogates for identifying PCAs at the county level in Yunnan, southwest China. We ran the Dobson algorithm under three surrogate scenarios at 75% and 100% conservation levels and identified four types of PCAs. Assessment of the protection efficiencies of the four types of PCAs showed that endangered plants had higher surrogacy values than endangered animals but that the two were not substitutable; coupled endangered plants and animals as surrogates yielded a higher surrogacy value than endangered plants or animals as surrogates; the plant-animal priority areas (PAPAs) was the optimal among the four types of PCAs for conserving both endangered plants and animals in Yunnan. PAPAs could well represent overall species diversity distribution patterns and overlap with critical biogeographical regions in Yunnan. Fourteen priority units in PAPAs should be urgently considered as optimizing Yunnan's protected area system. The spatial pattern of PAPAs at the 100% conservation level could be conceptualized into three connected conservation belts, providing a valuable reference for optimizing the layout of the in situ protected area system in Yunnan. PMID:27538537

  5. Diversity and Strain Specificity of Plant Cell Wall Degrading Enzymes Revealed by the Draft Genome of Ruminococcus flavefaciens FD-1

    PubMed Central

    Berg Miller, Margret E.; Antonopoulos, Dionysios A.; Rincon, Marco T.; Band, Mark; Bari, Albert; Akraiko, Tatsiana; Hernandez, Alvaro; Thimmapuram, Jyothi; Henrissat, Bernard; Coutinho, Pedro M.; Borovok, Ilya; Jindou, Sadanari; Lamed, Raphael; Flint, Harry J.; Bayer, Edward A.; White, Bryan A.

    2009-01-01

    Background Ruminococcus flavefaciens is a predominant cellulolytic rumen bacterium, which forms a multi-enzyme cellulosome complex that could play an integral role in the ability of this bacterium to degrade plant cell wall polysaccharides. Identifying the major enzyme types involved in plant cell wall degradation is essential for gaining a better understanding of the cellulolytic capabilities of this organism as well as highlighting potential enzymes for application in improvement of livestock nutrition and for conversion of cellulosic biomass to liquid fuels. Methodology/Principal Findings The R. flavefaciens FD-1 genome was sequenced to 29x-coverage, based on pulsed-field gel electrophoresis estimates (4.4 Mb), and assembled into 119 contigs providing 4,576,399 bp of unique sequence. As much as 87.1% of the genome encodes ORFs, tRNA, rRNAs, or repeats. The GC content was calculated at 45%. A total of 4,339 ORFs was detected with an average gene length of 918 bp. The cellulosome model for R. flavefaciens was further refined by sequence analysis, with at least 225 dockerin-containing ORFs, including previously characterized cohesin-containing scaffoldin molecules. These dockerin-containing ORFs encode a variety of catalytic modules including glycoside hydrolases (GHs), polysaccharide lyases, and carbohydrate esterases. Additionally, 56 ORFs encode proteins that contain carbohydrate-binding modules (CBMs). Functional microarray analysis of the genome revealed that 56 of the cellulosome-associated ORFs were up-regulated, 14 were down-regulated, 135 were unaffected, when R. flavefaciens FD-1 was grown on cellulose versus cellobiose. Three multi-modular xylanases (ORF01222, ORF03896, and ORF01315) exhibited the highest levels of up-regulation. Conclusions/Significance The genomic evidence indicates that R. flavefaciens FD-1 has the largest known number of fiber-degrading enzymes likely to be arranged in a cellulosome architecture. Functional analysis of the genome has

  6. IDENTIFICATION AND CHARACTERIZATION OF THERMOBIFIDA FUSCA GENES INVOLVED IN PLANT CELL WALL DEGRADATION.

    SciTech Connect

    David B. Wilson

    2006-01-23

    Micro-array experiments identified a number of Thermobifida fusca genes which were upregulated by growth on cellulose or plant biomass. Five of these genes were cloned, overexpressed in E. coli and the expressed proteins were purified and characterized. These were a xyloglucanase,a 1-3,beta glucanase, a family 18 hydrolase and twocellulose binding proteins that contained no catalytic domains. The catalyic domain of the family 74 endoxyloglucanase with a C-terminal, cellulose binding module was crystalized and its 3-dimensional structure was determined by X-ray crystallography.

  7. Mercury in soils and plants in an abandoned cinnabar mining area (SW Spain).

    PubMed

    García-Sánchez, A; Murciego, A; Alvarez-Ayuso, E; Regina, I Santa; Rodríguez-González, M A

    2009-09-15

    An abandoned cinnabar mining area located in the South-West of Spain has been studied with the aim of assessing its mercury pollution level and enhancing the knowledge about the Hg soil/plant relationship. To do so, soils and plants were sampled near an inactive smelter and around two mining sites present in this area. Critical total Hg concentrations were found in the close environs of pollutant sources. These also show high levels of elemental Hg (up to 8 mg kg(-1)), but quite low exchangeable Hg contents (0.008-0.038 mg kg(-1)). Most plant specimens display in their aboveground tissues Hg concentrations comprised in the range 0.1-10 mg kg(-1), with a great proportion (50%) showing critical levels. Greater Hg contents were found in plant specimens growing in soils with higher elemental Hg concentrations. The plant species displaying the greatest Hg levels are either perennial species of small-medium size and/or showing medium-highly corrugated leaves, or annual plants of small size. Marrubium vulgare L., Bromus madritensis L. and Trifolium angustifolium L. are the plant species with the highest Hg contents (37.6, 12.7 and 9.0 mg kg(-1), respectively). Leaf specific surface seems an important feature in the atmospheric Hg uptake by plants. PMID:19345007

  8. Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants

    PubMed Central

    Aylward, Frank O.; Khadempour, Lily; Tremmel, Daniel M.; McDonald, Bradon R.; Nicora, Carrie D.; Wu, Si; Moore, Ronald J.; Orton, Daniel J.; Monroe, Matthew E.; Piehowski, Paul D.; Purvine, Samuel O.; Smith, Richard D.; Lipton, Mary S.; Burnum-Johnson, Kristin E.; Currie, Cameron R.

    2015-01-01

    Leaf-cutter ants are prolific and conspicuous constituents of Neotropical ecosystems that derive energy from specialized fungus gardens they cultivate using prodigious amounts of foliar biomass. The basidiomycetous cultivar of the ants, Leucoagaricus gongylophorus, produces specialized hyphal swellings called gongylidia that serve as the primary food source of ant colonies. Gongylidia also contain plant biomass-degrading enzymes that become concentrated in ant digestive tracts and are deposited within fecal droplets onto fresh foliar material as ants incorporate it into the fungus garden. Although the enzymes concentrated by L. gongylophorus within gongylidia are thought to be critical to the initial degradation of plant biomass, only a few enzymes present in these hyphal swellings have been identified. Here we use proteomic methods to identify proteins present in the gongylidia of three Atta cephalotes colonies. Our results demonstrate that a diverse but consistent set of enzymes is present in gongylidia, including numerous plant biomass-degrading enzymes likely involved in the degradation of polysaccharides, plant toxins, and proteins. Overall, gongylidia contained over three quarters of all biomass-degrading enzymes identified in the L. gongylophorus genome, demonstrating that the majority of the enzymes produced by this fungus for biomass breakdown are ingested by the ants. We also identify a set of 40 of these enzymes enriched in gongylidia compared to whole fungus garden samples, suggesting that certain enzymes may be particularly important in the initial degradation of foliar material. Our work sheds light on the complex interplay between leaf-cutter ants and their fungal symbiont that allows for the host insects to occupy an herbivorous niche by indirectly deriving energy from plant biomass. PMID:26317212

  9. Effects of surface area to volume ratio of PLGA scaffolds with different architectures on scaffold degradation characteristics and drug release kinetics.

    PubMed

    Chew, Sue Anne; Arriaga, Marco A; Hinojosa, Victor A

    2016-05-01

    In this work, PLGA scaffolds with different architectures were fabricated to investigate the effects of surface area to volume ratio (SVR) (which resulted from the different architectures) on scaffold degradation characteristics and drug release kinetics with minocycline as the model drug. It was hypothesized that the thin strand scaffolds, which had the highest SVR, would degrade faster than the thick strand and globular scaffolds as the increase in surface area will allow more contact between water molecules and degradable ester groups in the polymer. However, it was found that globular scaffolds, which had the lowest SVR, resulted in the fastest degradation which demonstrated that the amount of degradation of the scaffolds does not only depend on the SVR but also on other factors such as the retention of acidic degradation byproducts in the scaffold and scaffold porosity. PLGA 50 : 50 globular scaffolds resulted in a biphasic release profile, with a burst release in the beginning and the middle of the release study which may be beneficial for some drug delivery applications. A clear correlation between SVR and release rates was not observed, indicating that besides the availability of more surface area for drug to diffuse out of the polymer matrix, other factors such as amount of scaffold degradation and scaffold porosity may play a role in determining drug release kinetics. Further studies, such as scanning electron microscopy, need to be performed in the future to further evaluate the porosity, morphology and structure of the scaffolds. © 2016 Wiley Periodicals, Inc. J Biomed Mater Res Part A: 104A: 1202-1211, 2016. PMID:26780154

  10. Evaluating nurse plants for restoring native woody species to degraded subtropical woodlands

    PubMed Central

    Yelenik, Stephanie G; DiManno, Nicole; D'Antonio, Carla M

    2015-01-01

    Harsh habitats dominated by invasive species are difficult to restore. Invasive grasses in arid environments slow succession toward more desired composition, yet grass removal exacerbates high light and temperature, making the use of “nurse plants” an appealing strategy. In this study of degraded subtropical woodlands dominated by alien grasses in Hawai'i, we evaluated whether individuals of two native (Dodonaea viscosa, Leptocophylla tameiameia) and one non-native (Morella faya) woody species (1) act as natural nodes of recruitment for native woody species and (2) can be used to enhance survivorship of outplanted native woody species. To address these questions, we quantified the presence and persistence of seedlings naturally recruiting beneath adult nurse shrubs and compared survival and growth of experimentally outplanted seedlings of seven native woody species under the nurse species compared to intact and cleared alien-grass plots. We found that the two native nurse shrubs recruit their own offspring, but do not act as establishment nodes for other species. Morella faya recruited even fewer seedlings than native shrubs. Thus, outplanting will be necessary to increase abundance and diversity of native woody species. Outplant survival was the highest under shrubs compared to away from them with few differences between nurse species. The worst habitat for native seedling survival and growth was within the unmanaged invasive grass matrix. Although the two native nurse species did not differentially affect outplant survival, D. viscosa is the most widespread and easily propagated and is thus more likely to be useful as an initial nurse species. The outplanted species showed variable responses to nurse habitats that we attribute to resource requirements resulting from their typical successional stage and nitrogen fixation capability. PMID:25709807

  11. Evaluating nurse plants for restoring native woody species to degraded subtropical woodlands

    USGS Publications Warehouse

    Yelenik, Stephanie G.; DiManno, Nicole; D’Antonio, Carla M.

    2015-01-01

    Harsh habitats dominated by invasive species are difficult to restore. Invasive grasses in arid environments slow succession toward more desired composition, yet grass removal exacerbates high light and temperature, making the use of “nurse plants” an appealing strategy. In this study of degraded subtropical woodlands dominated by alien grasses in Hawai'i, we evaluated whether individuals of two native (Dodonaea viscosa, Leptocophylla tameiameia) and one non-native (Morella faya) woody species (1) act as natural nodes of recruitment for native woody species and (2) can be used to enhance survivorship of outplanted native woody species. To address these questions, we quantified the presence and persistence of seedlings naturally recruiting beneath adult nurse shrubs and compared survival and growth of experimentally outplanted seedlings of seven native woody species under the nurse species compared to intact and cleared alien-grass plots. We found that the two native nurse shrubs recruit their own offspring, but do not act as establishment nodes for other species. Morella faya recruited even fewer seedlings than native shrubs. Thus, outplanting will be necessary to increase abundance and diversity of native woody species. Outplant survival was the highest under shrubs compared to away from them with few differences between nurse species. The worst habitat for native seedling survival and growth was within the unmanaged invasive grass matrix. Although the two native nurse species did not differentially affect outplant survival, D. viscosa is the most widespread and easily propagated and is thus more likely to be useful as an initial nurse species. The outplanted species showed variable responses to nurse habitats that we attribute to resource requirements resulting from their typical successional stage and nitrogen fixation capability.

  12. 300 Area steam plant replacement, Hanford Site, Richland, Washington: Environmental assessment

    SciTech Connect

    1997-03-01

    Steam to support process operations and facility heating is currently produced by a centralized oil-fired plant located in the 300 Area and piped to approximately 26 facilities in the 300 Area. This plant was constructed during the 1940s and, because of tis age, is not efficient, requires a relatively large operating and maintenance staff, and is not reliable. The US Department of Energy is proposing an energy conservation measure for a number of buildings in the 300 Area of the Hanford Site. This action includes replacing the centralized heating system with heating units for individual buildings or groups of buildings, constructing new natural gas pipelines to provide a fuel source for many of these units and constructing a central control building to operate and maintain the system. A new steel-sided building would be constructed in the 300 Area in a previously disturbed area at least 400 m (one-quarter mile) from the Columbia River, or an existing 300 Area building would be modified and used. This Environmental Assessment evaluates alternatives to the proposed actions. Alternatives considered are: (1) the no action alternative; (2) use of alternative fuels, such as low-sulfur diesel oil; (3) construction of a new central steam plant, piping and ancillary systems; (4) upgrade of the existing central steam plant and ancillary systems; and (5) alternative routing of the gas distribution pipeline that is a part of the proposed action. A biological survey and culture resource review and survey were also conducted.

  13. Reabilitation of degraded area by erosion, using soil bioengineering techniques in Bacanga river basin, Sao Luis City - Maranhao State, Brazil.

    NASA Astrophysics Data System (ADS)

    Teixeira Guerra, A. J.; Rodrigues Bezerra, J. F.; da Mota Lima, L. D.; Silva Mendonça, J. K.; Vieira Souza, U. D.; Teixeira Guerra, T.

    2009-04-01

    The aim of this paper is to assess the stages of rehabilitation of a degraded site by erosion, in Salina/Sacavém district, São Luís City, considering geomorphologic characteristics and soil bioengineering techniques. This technique has been applied in different situations to rehabilitate degraded areas, with positive results from the use of biodegradable materials (e.g. vegetal fibres, wooden stakes and re-vegetation). These techniques stabilize the soil at low cost and improve the environment. Bioengineering involves the planned and strategic application of selected materials, involving biodegradable materials, often in combination with 'hard engineering' structures constructed from stone, concrete and steel. The settlement of São Luís was established in 1612 and has evolved in distinct phases. Rapid urban growth was associated with industrialization in the second half of the 18th Century. Rapid population and urban growth has intensified problems, compounded by poor planning and improper soil use. São Luís, like many other Brazilian cities, has experienced rapid population growth in recent decades, which has created a series of socio-economic and environmental problems, including accelerated soil erosion. Sacavém is one of these communities where natural and human factors contribute to the severe gully erosion. The local lithology is mainly Tertiary sandstones and, to a lesser extent, shales, argillites and siltstones, all of which belong to the Barreiras Formation. Weathering on these rocks produces erodible soils, including lithosols, latosols, concretionary red/yellow clay soils and concretionary plinthosols. Thus, erodible soils and regolith are subject to high erosion rates, especially on steeper slopes subject to additional human interventions. Furthermore, although regional slopes are quite gentle, there is localized high relative relief. Sacavém vegetation, in the gullied area, consists of brushwood. Secondary mixed forest and brushwood are the

  14. Evaluation of a superheater enhanced geothermal steam power plant in the Geysers area. Final report

    SciTech Connect

    Janes, J.

    1984-06-01

    This study was conducted to determine the attainable generation increase and to evaluate the economic merits of superheating the steam that could be used in future geothermal steam power plants in the Geyser-Calistoga Known Geothermal Resource Area (KGRA). It was determined that using a direct gas-fired superheater offers no economic advantages over the existing geothermal power plants. If the geothermal steam is heated to 900/sup 0/F by using the exhaust energy from a gas turbine of currently available performance, the net reference plant output would increase from 65 MW to 159 MW (net). Such hybrid plants are cost effective under certain conditions identified in this document. The power output from the residual Geyser area steam resource, now equivalent to 1437 MW, would be more than doubled by employing in the future gas turbine enhancement. The fossil fuel consumed in these plants would be used more efficiently than in any other fossil-fueled power plant in California. Due to an increase in evaporative losses in the cooling towers, the viability of the superheating concept is contingent on development of some of the water resources in the Geysers-Calistoga area to provide the necessary makeup water.

  15. Effect of power plant emission reductions on a nearby wilderness area: a case study in northwestern Colorado.

    PubMed

    Mast, M Alisa; Ely, Daniel

    2013-09-01

    This study evaluates the effect of emission reductions at two coal-fired power plants in northwestern Colorado on a nearby wilderness area. Control equipment was installed at both plants during 1999-2004 to reduce SO2 and NOx emissions. One challenge was separating the effects of local from regional emissions, which also declined during the study period. The long-term datasets examined confirm that emission reductions had a beneficial effect on air and water quality in the wilderness. Despite a 75 % reduction in SO2 emissions, sulfate aerosols measured in the wilderness decreased by only 20 %. Because the site is relatively close to the power plants (<75 km), the slow rate of conversion of SO2 to sulfate, particularly under conditions of low relative humidity, might account for this less than one-to-one response. On the clearest days, emissions controls appeared to improve visibility by about 1 deciview, which is a small but perceptible improvement. On the haziest days, however, there was little improvement perhaps reflecting the dominance of regional haze and other components of visibility degradation particularly organic carbon and dust. Sulfate and acidity in atmospheric deposition decreased by 50 % near the southern end of the wilderness of which 60 % was attributed to power plant controls and the remainder to reductions in regional sources. Lake water sulfate responded rapidly to trends in deposition declining at 28 lakes monitored in and near the wilderness. Although no change in the acid-base status was observed, few of the lakes appear to be at risk from chronic or episodic acidification. PMID:23355020

  16. Household dyeing plants and traditional uses in some areas of Italy

    PubMed Central

    Guarrera, Paolo Maria

    2006-01-01

    Background This paper reports the results of investigations carried out from 1977 to today in some areas of Italy (Latium, Marche, Abruzzo and to a limited extent in Sardinia) concerning traditional uses of dyeing plants in the household. Results Twenty-nine plants are described, distributed in 23 families, and for each species the vernacular name, the way it is used and the locations of traditional use are given. Other plants used in the past in the above-mentioned regions are recalled. Conclusion Among the new findings – not mentioned in previous literature, see references – is Muscari neglectum (purplish). Nowadays atavistic dye uses still persist only in Nule (Sardinia). PMID:16457717

  17. Protected Area Safeguard Tree and Shrub Communities from Degradation and Invasion: A Case Study in Eastern Madagascar

    NASA Astrophysics Data System (ADS)

    Brown, Kerry A.; Carter Ingram, J.; Flynn, Dan F. B.; Razafindrazaka, Rova; Jeannoda, Vololoniaina

    2009-07-01

    Despite their prevalence in both developed and developing countries, there have been surprisingly few field assessments of the ecological effectiveness of protected areas. This study aimed to assess the effectiveness of a key protected area in eastern Madagascar, Ranomafana National Park (RNP). We established paired 100 × 4-m vegetation transects (400 m2) within RNP and in remnant forests in the park’s peripheral zone. In each 400-m2 plot, all woody stems >1.5 cm in diameter at breast height were measured and identified to species. All species were also identified as native or non-native. We identified utilitarian species within all transects and they were sorted into use category. We calculated plot-level taxonomic biodiversity and functional diversity of utilitarian species; the latter was calculated by clustering the multivariate distances between species based on their utilitarian traits, and all metrics were tested using paired t-tests. Our results showed that there was significantly higher biodiversity inside RNP than in remnant forests and this pattern was consistent across all diversity metrics examined. Forests not located within the park’s boundary had significantly higher non-native species than within RNP. There was no statistically significant difference in functional diversity of utilitarian species inside RNP vs. remnant forests; however, the overall trend was toward higher diversity inside park boundaries. These findings suggested that RNP has been effective at maintaining taxonomic diversity relative to surrounding unprotected areas and restricting the spread of non-native plants. The results also suggested that low functional redundancy of forests outside of RNP might be of concern, because residents in surrounding villages may have few other substitutes for the services provided by species that are of critical importance to their livelihoods. This study highlights the challenges of trying to reconcile biodiversity conservation with human use

  18. Insights into the plant polysaccharide degradation potential of the xylanolytic yeast Pseudozyma brasiliensis.

    PubMed

    Kaupert Neto, Antonio Adalberto; Borin, Gustavo Pagotto; Goldman, Gustavo Henrique; Damásio, André Ricardo de Lima; Oliveira, Juliana Velasco de Castro

    2016-03-01

    In second-generation (2G) bioethanol production, plant cell-wall polysaccharides are broken down to release fermentable sugars. The enzymes of this process are classified as carbohydrate-active enzymes (CAZymes) and contribute substantially to the cost of biofuel production. A novel basidiomycete yeast species, Pseudozyma brasiliensis, was recently discovered. It produces an endo-β-1,4-xylanase with a higher specific activity than other xylanases. This enzyme is essential for the hydrolysis of biomass-derived xylan and has an important role in 2G bioethanol production. In spite of the P. brasiliensis biotechnological potential, there is no information about how it breaks down polysaccharides. For the first time, we characterized the secretome of P. brasiliensis grown on different carbon sources (xylose, xylan, cellobiose and glucose) and also under starvation conditions. The growth and consumption of each carbohydrate and the activity of the CAZymes of culture supernatants were analyzed. The CAZymes found in its secretomes, validated by enzymatic assays, have the potential to hydrolyze xylan, mannan, cellobiose and other polysaccharides. The data show that this yeast is a potential source of hydrolases, which can be used for biomass saccharification. PMID:26712719

  19. Deciphering Cyanide-Degrading Potential of Bacterial Community Associated with the Coking Wastewater Treatment Plant with a Novel Draft Genome.

    PubMed

    Wang, Zhiping; Liu, Lili; Guo, Feng; Zhang, Tong

    2015-10-01

    Biotreatment processes fed with coking wastewater often encounter insufficient removal of pollutants, such as ammonia, phenols, and polycyclic aromatic hydrocarbons (PAHs), especially for cyanides. However, only a limited number of bacterial species in pure cultures have been confirmed to metabolize cyanides, which hinders the improvement of these processes. In this study, a microbial community of activated sludge enriched in a coking wastewater treatment plant was analyzed using 454 pyrosequencing and Illumina sequencing to characterize the potential cyanide-degrading bacteria. According to the classification of these pyro-tags, targeting V3/V4 regions of 16S rRNA gene, half of them were assigned to the family Xanthomonadaceae, implying that Xanthomonadaceae bacteria are well-adapted to coking wastewater. A nearly complete draft genome of the dominant bacterium was reconstructed from metagenome of this community to explore cyanide metabolism based on analysis of the genome. The assembled 16S rRNA gene from this draft genome showed that this bacterium was a novel species of Thermomonas within Xanthomonadaceae, which was further verified by comparative genomics. The annotation using KEGG and Pfam identified genes related to cyanide metabolism, including genes responsible for the iron-harvesting system, cyanide-insensitive terminal oxidase, cyanide hydrolase/nitrilase, and thiosulfate:cyanide transferase. Phylogenetic analysis showed that these genes had homologs in previously identified genomes of bacteria within Xanthomonadaceae and even presented similar gene cassettes, thus implying an inherent cyanide-decomposing potential. The findings of this study expand our knowledge about the bacterial degradation of cyanide compounds and will be helpful in the remediation of cyanides contamination. PMID:25910603

  20. Research on estimation crop planting area by integrating the optical and microwave remote sensing data

    NASA Astrophysics Data System (ADS)

    Liu, Jiang; Yu, Fan; Liu, Dandan; Tian, Jing; Zhang, Weicheng; Wang, Qiang; Yang, Jinling; Zhang, Lei

    2015-12-01

    Considering the problem in monitoring agricultural condition in the semi-arid areas of Northwest of China, we propose a new method for estimation of crop planting area, using the single phase optical and microwave remote sensing data collaboratively, which have demonstrated their respective advantages in the extraction of surface features. In the model, the ASAR backscatter coefficient is normalized by the incident angle at first, then the classifier based on Bayesian network is developed, and the VV, VH polarization of ASAR and all the 7 TM bands are taken as the input of the classifier to get the class labels of each pixel of the images. Moreover the crop planting areas can be extracted by the classification results. At last, the model is validated for the necessities of normalization by the incident angle and integration of TM and ASAR respectively. It results that the estimation accuracy of crop planting area of corn and other crops garden are 98.47% and 78.25% respectively using the proposed method, with an improvement of estimation accuracy of about 3.28% and 4.18% relative to single TM classification. These illustrate that synthesis of optical and microwave remote sensing data is efficient and potential in estimation crop planting area.

  1. Enrichment and broad representation of plant biomass-degrading enzymes in the specialized hyphal swellings of Leucoagaricus gongylophorus, the fungal symbiont of leaf-cutter ants

    DOE PAGESBeta

    Aylward, Frank O.; Khadempour, Lily; Tremmel, Daniel M.; McDonald, Bradon R.; Nicora, Carrie D.; Wu, Si; Moore, Ronald J.; Orton, Daniel J.; Monroe, Matthew E.; Piehowski, Paul D.; et al

    2015-08-28

    Leaf-cutter ants are prolific and conspicuous constituents of Neotropical ecosystems that derive energy from specialized fungus gardens they cultivate using prodigious amounts of foliar biomass. The basidiomycetous cultivar of the ants, Leucoagaricus gongylophorus, produces specialized hyphal swellings called gongylidia that serve as the primary food source of ant colonies. Gongylidia also contain plant biomass-degrading enzymes that become concentrated in ant digestive tracts and are deposited within fecal droplets onto fresh foliar material as ants incorporate it into the fungus garden. Although the enzymes concentrated by L. gongylophorus within gongylidia are thought to be critical to the initial degradation of plantmore » biomass, only a few enzymes present in these hyphal swellings have been identified. Here we use proteomic methods to identify proteins present in the gongylidia of three Atta cephalotes colonies. Our results demonstrate that a diverse but consistent set of enzymes is present in gongylidia, including numerous plant biomass-degrading enzymes likely involved in the degradation of polysaccharides, plant toxins, and proteins. Overall, gongylidia contained over three quarters of all biomass-degrading enzymes identified in the L. gongylophorus genome, demonstrating that the majority of the enzymes produced by this fungus for biomass breakdown are ingested by the ants. We also identify a set of 40 of these enzymes enriched in gongylidia compared to whole fungus garden samples, suggesting that certain enzymes may be particularly important in the initial degradation of foliar material. Our work sheds light on the complex interplay between leaf-cutter ants and their fungal symbiont that allows for the host insects to occupy an herbivorous niche by indirectly deriving energy from plant biomass.« less

  2. Host plant range of Raoiella indica (Acari: Tenuipalpidae) in areas of invasion of the New World.

    PubMed

    Carrillo, Daniel; Amalin, Divina; Hosein, Farzan; Roda, Amy; Duncan, Rita E; Peña, Jorge E

    2012-08-01

    Raoiella indica has spread rapidly through the Neotropical region where the mite damages economically and ecologically important plants. Three studies were conducted to determine the host plant range of R. indica, using the presence of colonies containing all life stages as an indicator of reproductive suitability. Periodic surveys at the Fairchild Tropical Botanic Garden (Miami Dade County, FL, USA) and the Royal Botanical Gardens (Port of Spain, Trinidad and Tobago) identified 27 new reproductive host plants. The reproductive suitability of two dicotyledonous species and three native Florida palm species was examined. An updated list of reproductive host plants of R. indica is presented. All reported reproductive hosts (91 plant species) of R. indica are monocots from the orders Arecales (Arecaceae), Zingiberales (Heliconiaceae, Musaceae, Strelitziaceae, Zingiberaceae) and Pandanales (Pandanaceae). Most are palms of the family Arecaceae that originated in areas of the Eastern Hemisphere; about one fourth of the reported hosts are native to the New World and could be considered new host associations of R. indica. Six years after the initial detection in the Caribbean, R. indica has expanded its host plant range. Here we report 27 new reproductive host of R. indica that represent 30% of increase on previous host plant records. As this mite continues spreading in the Neotropical region a great diversity of plants is potentially affected. PMID:21915682

  3. Selective depredation of planted hardwood seedlings by wild pigs in a wetland restoration area

    SciTech Connect

    Mayer, J.J.

    1999-12-17

    Following the planting of several thousand hardwood seedlings in a 69-ha wetland restoration area in west-central South Carolina, wild pigs (Sus scrofa) depredated a large percentage of the young trees. This planting was undertaken as part of a mitigation effort to restore a bottomland hardwood community in the corridor and delta of a third order stream that had been previously impacted by the discharge of heated nuclear reactor effluent. The depredated restoration areas had been pretreated with both herbicide and control burning prior to planting the hardwood seedlings. After discovery of the wild pig damage, these areas were surveyed on foot to assess the magnitude of the depredation on the planted seedling crop. Foraging by the local wild pigs in the pretreatment areas selectively impacted only four of the nine hardwood species used in this restoration effort. Based on the surveys, the remaining five species did not appear to have been impacted at all. A variety of reasons could be used to explain this phenomenon. The pretreatment methodology is thought to have been the primary aspect of the restoration program that initially led the wild pigs to discover the planted seedlings. In addition, it is possible that a combination of other factors associated with odor and taste may have resulted in the selective depredation. Future wetland restoration efforts in areas with wild pigs should consider pretreatment methods and species to be planted. If pretreatment methods and species such as discussed in the present study must be used, then the prior removal of wild pigs from surrounding lands will help prevent depredations by this non-native species.

  4. Participatory evaluation of monitoring and modeling of sustainable land management technologies in areas prone to land degradation.

    PubMed

    Stringer, L C; Fleskens, L; Reed, M S; de Vente, J; Zengin, M

    2014-11-01

    Examples of sustainable land management (SLM) exist throughout the world. In many cases, SLM has largely evolved through local traditional practices and incremental experimentation rather than being adopted on the basis of scientific evidence. This means that SLM technologies are often only adopted across small areas. The DESIRE (DESertIfication mitigation and REmediation of degraded land) project combined local traditional knowledge on SLM with empirical evaluation of SLM technologies. The purpose of this was to evaluate and select options for dissemination in 16 sites across 12 countries. It involved (i) an initial workshop to evaluate stakeholder priorities (reported elsewhere), (ii) field trials/empirical modeling, and then, (iii) further stakeholder evaluation workshops. This paper focuses on workshops in which stakeholders evaluated the performance of SLM technologies based on the scientific monitoring and modeling results from 15 study sites. It analyses workshop outcomes to evaluate how scientific results affected stakeholders' perceptions of local SLM technologies. It also assessed the potential of this participatory approach in facilitating wider acceptance and implementation of SLM. In several sites, stakeholder preferences for SLM technologies changed as a consequence of empirical measurements and modeling assessments of each technology. Two workshop examples are presented in depth to: (a) explore the scientific results that triggered stakeholders to change their views; and (b) discuss stakeholders' suggestions on how the adoption of SLM technologies could be up-scaled. The overall multi-stakeholder participatory approach taken is then evaluated. It is concluded that to facilitate broad-scale adoption of SLM technologies, de-contextualized, scientific generalisations must be given local context; scientific findings must be viewed alongside traditional beliefs and both scrutinized with equal rigor; and the knowledge of all kinds of experts must be

  5. Degradation of marine ecosystems and decline of fishery resources in marine protected areas in the US Virgin Islands

    USGS Publications Warehouse

    Rogers, C.S.; Beets, J.

    2001-01-01

    The large number of marine protected areas (MPAs) in the Caribbean (over 100) gives a misleading impression of the amount of protection the reefs and other marine resources in this region are receiving. This review synthesizes information on marine resources in two of the first MPAs established in the USA, namely Virgin Islands National Park (1962) and Buck Island Reef National Monument (1961), and provides compelling evidence that greater protection is needed, based on data from some of the longest running research projects on coral reefs, reef fish assemblages, and seagrass beds for the Caribbean. Most of the stresses affecting marine resources throughout the Caribbean (e.g. damage from boats, hurricanes and coral diseases) are also causing deterioration in these MPAs. Living coral cover has decreased and macroalgal cover has increased. Seagrass densities have decreased because of storms and anchor damage. Intensive fishing in the US Virgin Islands has caused loss of spawning aggregations and decreases in mean fish size and abundance. Groupers and snappers are far less abundant and herbivorous fishes comprise a greater proportion of samples than in the 1960s. Effects of intensive fishing are evident even within MPA boundaries. Although only traditional fishing with traps of 'conventional design' is allowed, commercial trap fishing is occurring. Visual samples of fishes inside and outside Virgin Islands National 'Park showed no significant differences in number of species, biomass, or mean size of fishes. Similarly, the number of fishes per trap was statistically similar inside and outside park waters. These MPAs have not been effective because an unprecedented combination of natural and human factors is assaulting the resources, some of the greatest damage is from stresses outside the control of park managers (e.g. hurricanes), and enforcement of the few regulations has been limited. Fully functioning MPAs which prohibit fishing and other extractive uses (e.g. no

  6. Potential of the TCE-degrading endophyte Pseudomonas putida W619-TCE to improve plant growth and reduce TCE phytotoxicity and evapotranspiration in poplar cuttings

    SciTech Connect

    Weyens, N.; van der Lelie, D.; Truyens, S.; Dupae, J.; Newman, L.; Taghavi, S.; Carleer, R.; Vangronsveld, J.

    2010-09-01

    The TCE-degrading poplar endophyte Pseudomonas putida W619-TCE was inoculated in poplar cuttings, exposed to 0, 200 and 400 mg l{sup -1} TCE, that were grown in two different experimental setups. During a short-term experiment, plants were grown hydroponically in half strength Hoagland nutrient solution and exposed to TCE for 3 days. Inoculation with P. putida W619-TCE promoted plant growth, reduced TCE phytotoxicity and reduced the amount of TCE present in the leaves. During a mid-term experiment, plants were grown in potting soil and exposed to TCE for 3 weeks. Here, inoculation with P. putida W619-TCE had a less pronounced positive effect on plant growth and TCE phytotoxicity, but resulted in strongly reduced amounts of TCE in leaves and roots of plants exposed to 400 mg l{sup -1} TCE, accompanied by a lowered evapotranspiration of TCE. Dichloroacetic acid (DCAA) and trichloroacetic acid (TCAA), which are known intermediates of TCE degradation, were not detected. The endophyte P. putida W619-TCE degrades TCE during its transport through the xylem, leading to reduced TCE concentrations in poplar, and decreased TCE evapotranspiration.

  7. Neutron activation analysis of thermal power plant ash and surrounding area soils.

    PubMed

    Al-Masri, M S; Haddad, Kh; Alsomel, N; Sarhil, A

    2015-08-01

    Elemental concentrations of As, Cd, Co, Cr, Fe, Hg, Mo, Ni, Se, and Zn have been determined in fly and bottom ash collected from Syrian power plants fired by heavy oil and natural gas using instrumental neutron activation analysis. The results showed that all elements were more concentrated in fly ash than in the fly ash; there was a clear increasing trend of the elemental concentrations in the fly ash along the flue gas pathway. The annual emission of elements was estimated. Elemental concentrations were higher inside the campus area than in surrounding areas, and the lowest values were found in natural-gas-fired power plant. In addition, the levels have decreased as the distance from power plant campus increases. However, the levels in the surrounding villages were within the Syrian standard for agriculture soil. PMID:26220782

  8. Basic Data Report -- Defense Waste Processing Facility Sludge Plant, Savannah River Plant 200-S Area

    SciTech Connect

    Amerine, D.B.

    1982-09-01

    This Basic Data Report for the Defense Waste Processing Facility (DWPF)--Sludge Plant was prepared to supplement the Technical Data Summary. Jointly, the two reports were intended to form the basis for the design and construction of the DWPF. To the extent that conflicting information may appear, the Basic Data Report takes precedence over the Technical Data Summary. It describes project objectives and design requirements. Pertinent data on the geology, hydrology, and climate of the site are included. Functions and requirements of the major structures are described to provide guidance in the design of the facilities. Revision 9 of the Basic Data Report was prepared to eliminate inconsistencies between the Technical Data Summary, Basic Data Report and Scopes of Work which were used to prepare the September, 1982 updated CAB. Concurrently, pertinent data (material balance, curie balance, etc.) have also been placed in the Basic Data Report. It is intended that these balances be used as a basis for the continuing design of the DWPF even though minor revisions may be made in these balances in future revisions to the Technical Data Summary.

  9. 7 CFR 1755.910 - RUS specification for outside plant housings and serving area interface systems.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 11 2012-01-01 2012-01-01 false RUS specification for outside plant housings and serving area interface systems. 1755.910 Section 1755.910 Agriculture Regulations of the Department of Agriculture (Continued) RURAL UTILITIES SERVICE, DEPARTMENT OF AGRICULTURE TELECOMMUNICATIONS POLICIES ON SPECIFICATIONS, ACCEPTABLE MATERIALS,...

  10. INVESTIGATIONS OF REPORTED PLANT AND ANIMAL HEALTH EFFECTS IN THE THREE MILE ISLAND AREA

    EPA Science Inventory

    The results of investigations into reported problems with plants and animals which may be related to the operation of and accident at the Three Mile Island Nuclear Power Station are presented. The kinds of problems reported are listed, and potential areas of concern (such as the ...

  11. 7 CFR 1755.910 - RUS specification for outside plant housings and serving area interface systems.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 11 2010-01-01 2010-01-01 false RUS specification for outside plant housings and serving area interface systems. 1755.910 Section 1755.910 Agriculture Regulations of the Department of Agriculture (Continued) RURAL UTILITIES SERVICE, DEPARTMENT OF AGRICULTURE TELECOMMUNICATIONS POLICIES ON SPECIFICATIONS, ACCEPTABLE MATERIALS,...

  12. Isolation of hydrocarbon-degrading and biosurfactant-producing bacteria and assessment their plant growth-promoting traits.

    PubMed

    Pacwa-Płociniczak, Magdalena; Płociniczak, Tomasz; Iwan, Joanna; Żarska, Monika; Chorążewski, Mirosław; Dzida, Marzena; Piotrowska-Seget, Zofia

    2016-03-01

    Forty-two hydrocarbon-degrading bacterial strains were isolated from the soil heavily contaminated with petroleum hydrocarbons. Forty-one strains were identified based on their whole-cell fatty acid profiles using the MIDI-MIS method. Thirty-three of them belong to species Rhodococcus erythropolis, while the others to the genera Rahnella (4), Serratia (3) and Proteus (1). Isolates were screened for their ability to produce biosurfactants/bioemulsifiers. For all of them the activity of several mechanisms characteristic for plant growth-promoting bacteria was also determined. In order to investigate surface active and emulsifying abilities of isolates following methods: oil-spreading, blood agar, methylene blue agar and determination of emulsification index, were used. Among studied bacteria 12 strains (CD 112, CD 126, CD 131, CD 132, CD 135, CD 147, CD 154, CD 155, CD 158, CD 161, CD 166 and CD 167) have been chosen as promising candidates for the production of biosurfactants and/or bioemulsifiers. Among them 2 strains (R. erythropolis CD 126 and Rahnella aquatilis CD 132) had the highest potential to be used in the bioaugmentation of PH-contaminated soil. Moreover, 15 of tested strains (CD 105, CD 106, CD 108, CD 111, CD 116, CD 120, CD 124, CD 125, CD 130, CD 132, CD 134, CD 154, CD 156, CD 161 and CD 170) showed the activity of four mechanisms (ACC deaminase activity, IAA and siderophore production, phosphate solubilization) considered to be characteristic for plant growth-promoting bacteria. Two of them (R. erythropolis CD 106 and R. erythropolis CD 111) showed the highest activity of above-mentioned mechanisms and thus are considered as promising agents in microbe assisted phytoremediation. PMID:26708648

  13. Trace element geochemistry of soils and plants in Kenyan conservation areas and implications for wildlife nutrition.

    PubMed

    Maskall, J; Thornton, I

    1991-06-01

    Trace element concentrations in soils, plants and animals in National Parks and Wildlife Reserves in Kenya are assessed using geochemical mapping techniques. Soil trace element concentrations are shown to be related to soil parent material and possibly to pedological and hydrological factors. At Lake Nakuru National Park, plant trace element concentrations vary with plant species and the geochemical conditions that influence uptake are discussed. Impala at Lake Nakuru National Park and black rhino at Solio Wildlife Reserve are shown to have a lower blood copper status than animals from other areas. The trace element status of wildlife is assessed also with respect to critical concentrations used for domestic ruminants. It is suggested that at Lake Nakuru National Park, the low soil copper content and high molybdenum content of some plants contributes to the low copper status of impala and may also influence the nutrition of other species. PMID:24202842

  14. Comparison of dwarf bamboos (Indocalamus sp.) leaf parameters to determine relationship between spatial density of plants and total leaf area per plant.

    PubMed

    Shi, Pei-Jian; Xu, Qiang; Sandhu, Hardev S; Gielis, Johan; Ding, Yu-Long; Li, Hua-Rong; Dong, Xiao-Bo

    2015-10-01

    The relationship between spatial density and size of plants is an important topic in plant ecology. The self-thinning rule suggests a -3/2 power between average biomass and density or a -1/2 power between stand yield and density. However, the self-thinning rule based on total leaf area per plant and density of plants has been neglected presumably because of the lack of a method that can accurately estimate the total leaf area per plant. We aimed to find the relationship between spatial density of plants and total leaf area per plant. We also attempted to provide a novel model for accurately describing the leaf shape of bamboos. We proposed a simplified Gielis equation with only two parameters to describe the leaf shape of bamboos one model parameter represented the overall ratio of leaf width to leaf length. Using this method, we compared some leaf parameters (leaf shape, number of leaves per plant, ratio of total leaf weight to aboveground weight per plant, and total leaf area per plant) of four bamboo species of genus Indocalamus Nakai (I. pedalis (Keng) P.C. Keng, I. pumilus Q.H. Dai and C.F. Keng, I. barbatus McClure, and I. victorialis P.C. Keng). We also explored the possible correlation between spatial density and total leaf area per plant using log-linear regression. We found that the simplified Gielis equation fit the leaf shape of four bamboo species very well. Although all these four species belonged to the same genus, there were still significant differences in leaf shape. Significant differences also existed in leaf area per plant, ratio of leaf weight to aboveground weight per plant, and leaf length. In addition, we found that the total leaf area per plant decreased with increased spatial density. Therefore, we directly demonstrated the self-thinning rule to improve light interception. PMID:26668724

  15. Estimation of Leaf Area Index and Plant Area Index of a Submerged Macrophyte Canopy Using Digital Photography

    PubMed Central

    Zhao, Dehua; Xie, Dong; Zhou, Hengjie; Jiang, Hao; An, Shuqing

    2012-01-01

    Non-destructive estimation using digital cameras is a common approach for estimating leaf area index (LAI) of terrestrial vegetation. However, no attempt has been made so far to develop non-destructive approaches to LAI estimation for aquatic vegetation. Using the submerged plant species Potamogeton malainus, the objective of this study was to determine whether the gap fraction derived from vertical photographs could be used to estimate LAI of aquatic vegetation. Our results suggested that upward-oriented photographs taken from beneath the water surface were more suitable for distinguishing vegetation from other objects than were downward-oriented photographs taken from above the water surface. Exposure settings had a substantial influence on the identification of vegetation in upward-oriented photographs. Automatic exposure performed nearly as well as the optimal trial exposure, making it a good choice for operational convenience. Similar to terrestrial vegetation, our results suggested that photographs taken for the purpose of distinguishing gap fraction in aquatic vegetation should be taken under diffuse light conditions. Significant logarithmic relationships were observed between the vertical gap fraction derived from upward-oriented photographs and plant area index (PAI) and LAI derived from destructive harvesting. The model we developed to depict the relationship between PAI and gap fraction was similar to the modified theoretical Poisson model, with coefficients of 1.82 and 1.90 for our model and the theoretical model, respectively. This suggests that vertical upward-oriented photographs taken from below the water surface are a feasible alternative to destructive harvesting for estimating PAI and LAI for the submerged aquatic plant Potamogeton malainus. PMID:23226557

  16. Antileishmanial activity of medicinal plants used in endemic areas in northeastern Brazil.

    PubMed

    De Queiroz, Aline Cavalcanti; Dias, Thays de Lima Matos Freire; Da Matta, Carolina Barbosa Brito; Cavalcante Silva, Luiz Henrique Agra; de Araújo-Júnior, João Xavier; de Araújo, Givanildo Bernardino; Moura, Flávia de Barros Prado; Alexandre-Moreira, Magna Suzana

    2014-01-01

    This study investigates the leishmanicidal activity of five species of plants used in folk medicine in endemic areas of the state of Alagoas, Brazil. Data were collected in the cities of Colonia Leopoldina, Novo Lino, and União dos Palmares, Alagoas state, from patients with cutaneous leishmaniasis (Leishmania amazonensis) who use medicinal plants to treat this disease. Plants extracts were tested at a concentration of 1-100 μg/mL in all experiments, except in an assay to evaluate activity against amastigotes, when 10 μg/mL was used. All plants extracts did not show deleterious activity to the host cell evidenced by LDH assay at 100, 10, and 1 μg/mL after 48 h of incubation. The plants extracts Hyptis pectinata (L.) Poit, Aloe vera L., Ruta graveolens L., Pfaffia glomerata (Spreng.) Pedersen, and Chenopodium ambrosioides L. exhibited direct activity against extracellular forms at 100 μg/mL; these extracts inhibited growth by 81.9%, 82.9%, 74.4%, 88.7%, and 87.4%, respectively, when compared with promastigotes. The plants extracts H. pectinata, A. vera, and R. graveolens also significantly diminished the number of amastigotes at 10 μg/mL, inhibiting growth by 85.0%, 40.4%, 94.2%, and 97.4%, respectively, when compared with control. Based on these data, we conclude that the five plants exhibited considerable leishmanicidal activity. PMID:25126099

  17. Antileishmanial Activity of Medicinal Plants Used in Endemic Areas in Northeastern Brazil

    PubMed Central

    De Queiroz, Aline Cavalcanti; Dias, Thays de Lima Matos Freire; Da Matta, Carolina Barbosa Brito; Cavalcante Silva, Luiz Henrique Agra; de Araújo-Júnior, João Xavier; de Araújo, Givanildo Bernardino; Moura, Flávia de Barros Prado; Alexandre-Moreira, Magna Suzana

    2014-01-01

    This study investigates the leishmanicidal activity of five species of plants used in folk medicine in endemic areas of the state of Alagoas, Brazil. Data were collected in the cities of Colonia Leopoldina, Novo Lino, and União dos Palmares, Alagoas state, from patients with cutaneous leishmaniasis (Leishmania amazonensis) who use medicinal plants to treat this disease. Plants extracts were tested at a concentration of 1–100 μg/mL in all experiments, except in an assay to evaluate activity against amastigotes, when 10 μg/mL was used. All plants extracts did not show deleterious activity to the host cell evidenced by LDH assay at 100, 10, and 1 μg/mL after 48 h of incubation. The plants extracts Hyptis pectinata (L.) Poit, Aloe vera L., Ruta graveolens L., Pfaffia glomerata (Spreng.) Pedersen, and Chenopodium ambrosioides L. exhibited direct activity against extracellular forms at 100 μg/mL; these extracts inhibited growth by 81.9%, 82.9%, 74.4%, 88.7%, and 87.4%, respectively, when compared with promastigotes. The plants extracts H. pectinata, A. vera, and R. graveolens also significantly diminished the number of amastigotes at 10 μg/mL, inhibiting growth by 85.0%, 40.4%, 94.2%, and 97.4%, respectively, when compared with control. Based on these data, we conclude that the five plants exhibited considerable leishmanicidal activity. PMID:25126099

  18. Degradation and interconversion of plant pteridines during sample preparation and ultra-high performance liquid chromatography-tandem mass spectrometry.

    PubMed

    Van Daele, Jeroen; Blancquaert, Dieter; Kiekens, Filip; Van Der Straeten, Dominique; Lambert, Willy E; Stove, Christophe P

    2016-03-01

    The degradation and interconversion of a selected set of pterins (dihydroneopterin, hydroxymethyldihydropterin, dihydroxanthopterin, neopterin, hydroxymethylpterin, xanthopterin, 6-formylpterin, 6-carboxypterin and pterin), spiked to charcoal-treated potato and Arabidopsis thaliana matrix was investigated, together with their relative recovery in potato and A. thaliana. As a result, a matrix-specific procedure for the ultra-high performance liquid chromatography-tandem mass spectrometry based determination of 6 aromatic pterins (neopterin, hydroxymethylpterin, xanthopterin, 6-formylpterin, 6-carboxypterin and pterin) is proposed: 1.5ml of an N2-flushed, alkaline (pH=10) extraction solvent is added to 200mg of plant sample. After boiling and homogenization, the samples are incubated: Arabidopsis samples for 30min at room temperature, while shaking, and potato samples for 2h at 37°C (applying a dienzyme treatment with α-amylase and protease). After a final boiling step, the samples are ultrafiltrated and resulting extracts are analyzed by UHPLC-MS/MS. PMID:26471671

  19. Comparisons among species composition, leaf area, and water relations in three shrub-steppe plant communities

    SciTech Connect

    Link, S.O.; Kirkham, R.R.; Thiede, M.E.; Downs, J.L.; Gee, G.W.

    1987-03-01

    Observations were made on plant communities dominated by Bromus tectorum (cheatgrass site), Artemisia tridentata (sagebrush site), and Grayia spinosa (hopsage site). Leaf area on a ground area basis of sagebrush was nor significantly different between the sagebrush and hopsage sites; however, the leaf area of hopsage was one-quarter that of sagebrush at the hopsage site. Pre-dawn xylem water potential of sagebrush was -2.91 MPa, while that of hopsage was -4.79 MPa. Stomatal conductance and transpiration rate of sagebrush and hopsage were nearly the same. 11 refs., 4 figs., 2 tabs.

  20. Wastewater Land Application Permit LA-000141 Renewal Information for the Central Facilities Area Sewage Treatment Plant

    SciTech Connect

    1999-02-01

    On July 25, 1994, the State of ldaho Division of Environmental Quality issued a Wastewater Land Application Permit, #LA-000141-01, for the Central Facilities Area Sewage Treatment Plant. The permit expires August 7, 1999. This report is being submitted with the renewal application and specifically addresses; Wastewater flow; Wastewater characteristics; Impacts to vegetation in irrigation area; Impacts to soil in irrigation area; Evaluation of groundwater monitoring wells for Wastewater Land Application Permit purposes; Summary of trends observed during the 5-year reporting period; and Projection of changes and new processes.

  1. Selection and screening of microbial consortia for efficient and ecofriendly degradation of plastic garbage collected from urban and rural areas of Bangalore, India.

    PubMed

    Skariyachan, Sinosh; Megha, M; Kini, Meghna Niranjan; Mukund, Kamath Manali; Rizvi, Alya; Vasist, Kiran

    2015-01-01

    Industrialization and urbanization have led to massive accumulation of plastic garbage all over India. The persistence of plastic in soil and aquatic environment has become ecological threat to the metropolitan city such as Bangalore, India. Present study investigates an ecofriendly, efficient and cost-effective approach for plastic waste management by the screening of novel microbial consortia which are capable of degrading plastic polymers. Plastic-contaminated soil and water samples were collected from six hot spots of urban and rural areas of Bangalore. The plastic-degrading bacteria were enriched, and degradation ability was determined by zone of clearance method. The percentage of polymer degradation was initially monitored by weight loss method, and the main isolates were characterized by standard microbiology protocols. These isolates were used to form microbial consortia, and the degradation efficiency of the consortia was compared with individual isolate and known strains obtained from the Microbial Type Culture Collection (MTCC) and Gene Bank, India. One of the main enzymes responsible for polymer degradation was identified, and the biodegradation mechanism was hypothesized by bioinformatics studies. From this study, it is evident that the bacteria utilized the plastic polymer as a sole source of carbon and showed 20-50% weight reduction over a period of 120 days. The two main bacteria responsible for the degradation were microbiologically characterized to be Pseudomonas spp. These bacteria could grow optimally at 37 °C in pH 9.0 and showed 35-40% of plastic weight reduction over 120 days. These isolates were showed better degradation ability than known strains from MTCC. The current study further revealed that the microbial consortia formulated by combining Psuedomonas spp. showed 40 plastic weight reduction over a period of 90 days. Further, extracellular lipase, one of the main enzymes responsible for polymer degradation, was identified. The

  2. Application of zerovalent iron (Fe(0)) to enhance degradation of HCHs and DDX in soil from a former organochlorine pesticides manufacturing plant.

    PubMed

    Yang, Su-Cai; Lei, Mei; Chen, Tong-Bin; Li, Xiao-Yan; Liang, Qi; Ma, Chuang

    2010-04-01

    Remediation of pesticide-polluted soil is particularly challenging when pesticides in soil are aged and a mixture of pesticides is present. Application of zerovalent iron (Fe(0)) was investigated to accelerate the degradation of HCHs (alpha-, beta-, gamma- and delta-hexachlorocyclohexane) and DDX (DDT, DDE and DDD) in the soil from a former organochlorine pesticide manufacturing plant. Ultrasonic extraction was used extract the organochlorine pesticides from soil. The identification and quantification of organochlorine pesticides in the extracts were accomplished by gas chromatograph. The addition of Fe(0) facilitated the degradation of the beta-HCH isomer, but had little effect on the degradation of alpha-HCH, gamma-HCH and delta-HCH. Zerovalent iron significantly increased the degradation of p,p'-DDT and o,p'-DDT in soil, and the percentage degradation of p,p'-DDT and o,p'-DDT increased with increased Fe(0) concentration during the first period of incubation. However, the amount of p,p'-DDD, the main dechlorinated product of p,p'-DDT, basically kept increased except in the unamended soil. The addition of Fe(0) therefore did not increased the percent degradation of summation SigmaDDT (p,p'-DDT+p,p'-DDD+p,p'-DDE) markedly. PMID:20303568

  3. Cd and Zn accumulation in plants from the Padaeng zinc mine area.

    PubMed

    Phaenark, C; Pokethitiyook, P; Kruatrachue, M; Ngernsansaruay, C

    2009-07-01

    Significant cadmium (Cd) contamination In soil and rice has been discovered in Mae Sot, Tak province, Thailand where the rice-based agricultural systems are established in the vicinity of a zinc mine. The prolonged consumption of Cd contaminated rice has potential risks to public health and health impacts of Cd exposed populations in Mae Sot have been demonstrated. The Thai government has prohibited rice cultivation in the area as an effort to prevent further exposure. Phytoextraction, the use of plants to remove contaminants from soil, is a potential option to manage Cd-contaminated areas. However, successful phytoextraction depends on first identifying effective hyperaccumulator plants appropriate for local climatic conditions. Five sampling sites at Padaeng Zinc mine, Tak province were selected to collect plant and soil samples. Total Cd and Zn concentrations in sediments or soils were approximately 596 and 20,673 mg kg(-1) in tailing pond area, 543 and 20,272 mg kg(-1) in open pit area, 894 and 31,319 mg kg(-1) in stockpile area, 1458 and 57,012 mg kg(-1) in forest area and 64 and 2733 mg kg(-1) in Cd contaminated rice field. Among a total of 36 plant species from 16 families, four species (Chromolaena odoratum, Gynura pseudochina, Impatiens violaeflora and Justicia procumbens) could be considered as Cd hyperaccumulators since their shoot Cd concentrations exceeded 100 mg Cd kg(-1) dry mass and they showed a translocation factor >1. Only Justicia procumbens could be considered as a Zn hyperaccumulator (Zn concentration in its shoot more than 10,000 mg Zn kg(-1) dry mass with the translocation factor >1). PMID:19810350

  4. [Relocation of Espeletia grandiflora (Asteraceae) plants as a strategy for enrichment of disturbed paramo areas (PNN Chingaza, Colombia)].

    PubMed

    Rojas-Zamora, Oscar; Insuasty-Torres, Jennyfer; de Cardenas, Camilo los Angeles; Ríos, Orlando Vargas

    2013-03-01

    Ecological restoration of the Andean paramos faces several ecological barriers mainly at the phase of dispersal and establishment of native species. With the aim to contribute to the enrichment of degraded areas, different strategies have to be developed to overcome those barriers. In this work we studied the response of individuals of Espeletia grandiflora (Asteraceae) to the relocation as a strategy for ecological restoration programs. We also evaluated the effect of size of relocated individuals on their survival and development. The work was carried out in an experimental plot at 3 424m altitude in the sector "Lagunas de Siecha" of Chingaza National Park, Colombia. We relocated 200 plants that belonged to three different size classes: 5, 10 and 15cm of initial height. The following variables were registered: survival, plant height, number of living leaves and stem diameter of each individual. We also evaluated the differences between individuals in survival and development. In terms of survival the most efficient size classes corresponded to 15cm high; the survival was 85% after two years. The relative growth rates for height and stem diameter decreases with the increase in size, but the absolute increase in height did not show significant differences between the three sizes tested. Since the stem diameter was found the strongest survival predictor after two years of relocation activities, we suggest its use as a criterion for selection of relocation individuals. The relocation of individuals of E. grandiflora had a positive side effect, carrying other species that may contribute to the enrichment and restoration of degraded areas. Among these, we found species of the genus Hypericum, as well as Arcytophyllum nitidum and Calamagrostis effusa, which should be evaluated in terms of survival and development for the subsequent implementation of the relocation strategy. In this study we verified the successful relocation of individuals of E. grandiflora as a

  5. The utilization and management of plant resources in rural areas of the Limpopo Province, South Africa

    PubMed Central

    2013-01-01

    Background Most rural people in the Limpopo Province depend on plant resources to meet their livelihood needs. However, there is insufficient recorded information regarding their use and management. The current study therefore was carried out in selected villages of the Limpopo Province, to close this knowledge gap. Methods Information was collected from 60 people residing in two villages, using a semi-structured questionnaire, supplemented with field observations. Results A total of 47 wild plant species (95% indigenous and 5% exotics) from 27 families, mostly from the Fabaceae (17%), Anacardiaceae (9%), and Combretaceae (9%) were documented. These species were used primarily for firewood (40%), food (36%) and medicine (29%). Significantly used species included Sclerocarya birrea (85%), Combretum kraussii (35%) and Harpephyllum caffrum (35%). Local traditional rules and regulations including taboos, social beliefs and fines are in place to aid in the management of communal resources. However, a significant number (67%) of participants mentioned that they were not pleased with these rules and regulations. Conclusion The current study concluded that plant resources still play an important role in the surveyed rural areas of the Limpopo Province. Furthermore, for sustainable utilization and long-term conservation of plants in these areas the government should assist communities in the management of their plant resources. PMID:23590903

  6. An aerial radiological survey of the Portsmouth Gaseous Diffusion Plant and surrounding area, Portsmouth, Ohio

    SciTech Connect

    Not Available

    1992-09-01

    An aerial radiological survey was conducted from July 11--20, 1990, over an 83-square-kilometer (32-square-mile) area surrounding the Portsmouth Gaseous Diffusion Plant located near Portsmouth, Ohio. The survey was conducted at a nominal altitude of 91 meters (300 feet) with line spacings of 122 meters (400 feet). A contour map of the terrestrial gamma exposure rate extrapolated to 1 meter above ground level (AGL) was prepared and overlaid on an aerial photograph and a set of United States Geological Survey (USGS) topographic maps of the area. The terrestrial exposure rates varied from about 7 to 14 microroentgens per hour ([mu]R/h) at 1 meter above the ground. Analysis of the data for man-made sources and for the uranium decay product, protactinium-234m ([sup 234m]Pa), showed five sites within the boundaries of the Portsmouth Gaseous Diffusion Plant with elevated readings. Spectra obtained in the vicinity of the buildings at the Portsmouth Gaseous Diffusion Plant showed the presence of [sup 234m]Pa, a uranium-238 ([sup 238]U) decay product. In addition, spectral analysis of the data obtained over the processing plant facility showed gamma activity indicative of uranium-235 ([sup 234]U). No other man-made gamma ray emitting radioactive material was detected, either on or off the Portsmouth Gaseous Diffusion Plant property. Soil samples and pressurized ion chamber measurements were obtained at five different locations within the survey boundlaries to support the aerial data.

  7. Bioaccumulation of thallium by the wild plants grown in soils of mining area.

    PubMed

    Sasmaz, Merve; Akgul, Bunyamin; Yıldırım, Derya; Sasmaz, Ahmet

    2016-11-01

    Gümüsköy Ag (As, Pb, and Tl) deposits are one of the largest silver deposits in the country and located about 25 km west of Kütahya, Turkey. This study investigated the accumulation and transport of thallium into 11 wild plants in soil of the mining area. Plant samples and their associated soils were collected from the field and Tl contents were measured with inductively coupled plasma mass spectroscopy (ICP-MS). The mean concentrations in the soil, roots, and shoots of the studied plants were, respectively, 170, 318, and 315 mg kg(-1) for Tl. The plants analyzed and collected from the studied area were separated into different groups based on enrichment coefficients of roots and shoots (ECR and ECS). The results showed that because of their higher ECR and ECS, the following could be good bioaccumulators: CY, IS, SL, and VR for Tl. Therefore, these plants can be useful for remediation or phytoremediation of soils polluted by Tl. PMID:27196508

  8. Assessment of organochlorine pesticides residues in higher plants from oil exploration areas of Niger Delta, Nigeria.

    PubMed

    Sojinu, O Samuel; Sonibare, Oluwadayo O; Ekundayo, Olusegun O; Zeng, Eddy Y

    2012-09-01

    The concentrations and distributions of organochlorine pesticides (OCPs) in some higher plant samples collected from oil exploration areas of the Niger Delta, Nigeria were examined. The concentrations of Σ(25)OCP ranged from 82 to 424, 44 to 200 , 34 to 358, 33 to 106 and 16 to 75 ng/g in Olomoro, Oginni, Uzere, Irri and Calabar plants, respectively. The compositional profiles of the analysed OCPs in most of the plants showed no fresh inputs in the area. The OCPs detected in the samples could have resulted from pesticide usage for intense farming activities cum the use of pesticides to control household pests and insects in the area. Drilling fluids and corrosion inhibitors used in petroleum explorations also have chlorinated compounds as additives thereby serving as potential sources of OCPs. Among the studied plants, elephant grass showed high bioaccumulation and phytoremediation potentials of OCPs. The ΣHCH concentrations exceeded the allowable daily intake limit thereby serving as potential threat to humans. PMID:22789817

  9. Production of plant cell wall degrading enzymes by monoculture and co-culture of Aspergillus niger and Aspergillus terreus under SSF of banana peels

    PubMed Central

    Rehman, Shazia; Aslam, Hina; Ahmad, Aqeel; Khan, Shakeel Ahmed; Sohail, Muhammad

    2014-01-01

    Filamentous fungi are considered to be the most important group of microorganisms for the production of plant cell wall degrading enzymes (CWDE), in solid state fermentations. In this study, two fungal strains Aspergillus niger MS23 and Aspergillus terreus MS105 were screened for plant CWDE such as amylase, pectinase, xylanase and cellulases (β-glucosidase, endoglucanase and filterpaperase) using a novel substrate, Banana Peels (BP) for SSF process. This is the first study, to the best of our knowledge, to use BP as SSF substrate for plant CWDE production by co-culture of fungal strains. The titers of pectinase were significantly improved in co-culture compared to mono-culture. Furthermore, the enzyme preparations obtained from monoculture and co-culture were used to study the hydrolysis of BP along with some crude and purified substrates. It was observed that the enzymatic hydrolysis of different crude and purified substrates accomplished after 26 h of incubation, where pectin was maximally hydrolyzed by the enzyme preparations of mono and co-culture. Along with purified substrates, crude materials were also proved to be efficiently degraded by the cocktail of the CWDE. These results demonstrated that banana peels may be a potential substrate in solid-state fermentation for the production of plant cell wall degrading enzymes to be used for improving various biotechnological and industrial processes. PMID:25763058

  10. Distribution of anthropogenic fill material within the Y-12 plant area, Oak Ridge, Tennessee

    SciTech Connect

    Sutton, G.E. Jr. |; Field, S.M.

    1995-10-01

    Widespread groundwater contamination in the vicinity of the Oak Ridge Y-12 Plant has been documented through a variety of monitoring efforts since the late 1970s. Various contaminants, most notably volatile organic compounds (VOCs), have migrated through the subsurface and formed extensive contaminant plumes within the Knox Aquifer/Maynardville Limestone, the primary exit pathway for groundwater transport within the Bear Creek Valley. In 1991, an integrated, comprehensive effort (Upper East Fork Poplar Creek [UEFPC] Phase I monitoring network) was initiated in order to (1) identify contaminant source areas within the industrialized portions of the plant and (2) define contamination migration pathways existing between the source areas and the Knox Aquifer/Maynardville Limestone. Data obtained during previous studies have indicated that extensive zones of fill and buried utility trenches may serve as preferred migration pathways. In addition, portions of UEFPC were rerouted, with several of its tributaries being filled during the initial construction of the plant. These filled surface drainage features are also believed to serve as preferred migration pathways. The identification of preferred contaminant migration pathways within the Y-12 Plant area is essential and required to refine the current Bear Creek Valley groundwater conceptual model and to assist in the selection of technically feasible and cost effective remedial strategies. This report presents the results of an initial investigation of the occurrence of manmade (anthropogenic) fill and its effect upon groundwater movement within the plant area. These interpretations are subject to revision and improvement as further investigation of the effects of the fill upon contaminant migration progresses.

  11. Rhizoremediation of diesel-contaminated soil with two rapeseed varieties and petroleum degraders reveals different responses of the plant defense mechanisms.

    PubMed

    Wojtera-Kwiczor, Joanna; Zukowska, Weronika; Graj, Weronika; Małecka, Arleta; Piechalak, Aneta; Ciszewska, Liliana; Chrzanowski, Łukasz; Lisiecki, Piotr; Komorowicz, Izabela; Barałkiewicz, Danuta; Voss, Ingo; Scheibe, Renate; Tomaszewska, Barbara

    2014-01-01

    Plant-assisted bioremediation (rhizoremediation) stands out as a potential tool to inactivate or completely remove xenobiotics from the polluted environment. Therefore, it is of key importance to find an adequate combination of plant species and microorganisms that together enhance the clean-up process. To understand the response of plants upon bioaugmentation, the antioxidative and detoxification system was analyzed in high and low erucic acid rapeseed varieties (HEAR and LEAR, respectively), after 8 weeks of their treatment with petroleum degraders and 6000 mg diesel oil/kg dry soil. The oxidative stress was enhanced in LEAR being exposed to sole diesel oil, in comparison with HEAR. However, when LEAR plants were additionally inoculated with bacteria, suppression of total catalase (CAT) and ascorbate peroxidase (APX) activity were observed. Interestingly, glutathione transferase (GST) activity was found in these plants at a much higher level than in HEAR, which correlated with a more efficient diesel removal performed by LEAR in the polluted soil and upon bioaugmentation. A distinct profile of polycyclic aromatic hydrocarbons (PAH) was detected in leaves of these plants. Neither LEAR nor HEAR experienced any changes in the photosynthetic capacity upon diesel pollution and presence of petroleum degraders, which supports the usefulness of rhizoremediation with rapeseed. PMID:24933884

  12. Uptake, degradation and chiral discrimination of N-acyl-D/L-homoserine lactones by barley (Hordeum vulgare) and yam bean (Pachyrhizus erosus) plants.

    PubMed

    Götz, Christine; Fekete, Agnes; Gebefuegi, Istvan; Forczek, Sándor T; Fuksová, Kvetoslava; Li, Xiaojing; Englmann, Matthias; Gryndler, Milan; Hartmann, Anton; Matucha, Miroslav; Schmitt-Kopplin, Philippe; Schröder, Peter

    2007-11-01

    Bacterial intraspecies and interspecies communication in the rhizosphere is mediated by diffusible signal molecules. Many Gram-negative bacteria use N-acyl-homoserine lactones (AHLs) as autoinducers in the quorum sensing response. While bacterial signalling is well described, the fate of AHLs in contact with plants is much less known. Thus, adsorption, uptake and translocation of N-hexanoyl- (C6-HSL), N-octanoyl- (C8-HSL) and N-decanoyl-homoserine lactone (C10-HSL) were studied in axenic systems with barley (Hordeum vulgare L.) and the legume yam bean (Pachyrhizus erosus (L.) Urban) as model plants using ultra-performance liquid chromatography (UPLC), Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) and tritium-labelled AHLs. Decreases in AHL concentration due to abiotic adsorption or degradation were tolerable under the experimental conditions. The presence of plants enhanced AHL decline in media depending on the compounds' lipophilicity, whereby the legume caused stronger AHL decrease than barley. All tested AHLs were traceable in root extracts of both plants. While all AHLs except C10-HSL were detectable in barley shoots, only C6-HSL was found in shoots of yam bean. Furthermore, tritium-labelled AHLs were used to determine short-term uptake kinetics. Chiral separation by GC-MS revealed that both plants discriminated D-AHL stereoisomers to different extents. These results indicate substantial differences in uptake and degradation of different AHLs in the plants tested. PMID:17899036

  13. Polonium-210 in the environment around a radioactive waste disposal area and phosphate ore processing plant.

    PubMed

    Arthur, W J; Markham, O D

    1984-04-01

    Polonium-210 concentrations were determined for soil, vegetation and small mammal tissues collected at a solid radioactive waste disposal area, near a phosphate ore processing plant and at two rural areas in southeastern Idaho. Polonium concentrations in media sampled near the radioactive waste disposal facility were equal to or less than values from rural area samples, indicating that disposal of solid radioactive waste at the Idaho National Engineering Laboratory Site has not resulted in increased environmental levels of polonium. Concentrations of 210Po in soils, deer mice hide and carcass samples collected near the phosphate processing plant were statistically (P less than or equal to 0.05) greater than the other sampling locations; however, the mean 210Po concentration in soils and small mammal tissues from sampling areas near the phosphate plant were only four and three times greater, respectively, than control values. No statistical (P greater than 0.05) difference was observed for 210Po concentrations in vegetation among any of the sampling locations. PMID:6706588

  14. Woody plant establishment in grassed reclamation areas of the Athabasca oil sands

    SciTech Connect

    Fedkenheuer, A.W.

    1980-12-01

    The primary end land use for areas disturbed by the Syncrude Canada Ltd. oil sands surface mining venture is forest cover. Short term erosion control is of concern, however, and this results in the early establishment of a grass and legume cover. Problems have subsequently been encountered in attempts to establish woody plants in the grass and legume cover. Vegetation competition for soil moisture and nutrients and rodent damage to woody seedlings have been the major problem areas. A study was initiated in 1978 to evaluate methods of manipulating the grass and legume cover sufficiently to improve success rates in establishing a variety of shrubs and trees. Five replicated treatments using the chemical herbicide glyphosate, soil scarification and fire alone plus soil scarification were established on an area seeded to grass and legumes in spring 1976. Woody plant survival and rodent damage, populations and distribution are being assessed annually in spring and fall. Rodent damage to woody seedlings was heavy in fall 1978 with 80 percent of the deciduous seedlings on non-scarified plots being damaged. In June 1979, 98 percent of the deciduous plants on the control and herbicide treatment areas were damaged. Damage to conifers was approximately 30 percent less during this time. Prescribed burning and mechanical scarification substantially reduced rodent damage. Seedling survival was variable with Amelanchier alnifolia, Pinus contorta and Populus tremuloides consistently exhibiting the highest survival rates.

  15. Biomass, Leaf Area, and Resource Availability of Kudzu Dominated Plant Communities Following Herbicide Treatment

    SciTech Connect

    L.T. Rader

    2001-10-01

    Kudzu is an exotic vine that threatens the forests of the southern U.S. Five herbicides were tested with regard to their efficacy in controlling kudzu, community recover was monitored, and interactions with planted pines were studied. The sites selected were old farm sites dominated by kudzu.These were burned following herbicide treatment. The herbicides included triclopyr, clopyralid, metsulfuron, tebuthiuron, and picloram plus 2,4-D. Pine seedlings were planted the following year. Regression equations were developed for predicting biomass and leaf area. Four distinct plant communities resulted from the treatments. The untreated check continued to be kudzu dominated. Blackberry dominated the clopyradid treatment. Metsulfron, trychlopyr and picloram treated sites resulted in herbaceous dominated communities. The tebuthiuron treatment maintained all vegetation low.

  16. Leaf-area estimates from spectral measurements over various planting dates of wheat

    NASA Technical Reports Server (NTRS)

    Hatfield, J. L.; Kanemasu, E. T.; Asrar, G.; Jackson, R. D.; Pinter, P. J., Jr.; Reginato, R. J.; Idso, S. B.

    1985-01-01

    Several vegetative indices were analyzed for their sensitivity and stability to green-leaf-area index (LAI) changes over various planting dates and irrigation frequencies of wheat grown at Phoenix, AZ, from 1978 to 1980. Seasonal patterns of greenness showed that values saturated at LAI values above 4.0 did not return to the pre-emergence bare-soil value at senescence, and were not uniquely related to LAI over the various planting dates. Regressions of individual MSS band reflectances against LAI also showed that there was not a unique relation between any of the bands and LAI. However, the near-infrared/red reflectance ratio was stable over all planting dates and could be used successfully over a number of years and locations.

  17. Evidence That GH115 α-Glucuronidase Activity, Which Is Required to Degrade Plant Biomass, Is Dependent on Conformational Flexibility*

    PubMed Central

    Rogowski, Artur; Baslé, Arnaud; Farinas, Cristiane S.; Solovyova, Alexandra; Mortimer, Jennifer C.; Dupree, Paul; Gilbert, Harry J.; Bolam, David N.

    2014-01-01

    The microbial degradation of the plant cell wall is an important biological process that is highly relevant to environmentally significant industries such as the bioenergy and biorefining sectors. A major component of the wall is glucuronoxylan, a β1,4-linked xylose polysaccharide that is decorated with α-linked glucuronic and/or methylglucuronic acid (GlcA/MeGlcA). Recently three members of a glycoside hydrolase family, GH115, were shown to hydrolyze MeGlcA side chains from the internal regions of xylan, an activity that has not previously been described. Here we show that a dominant member of the human microbiota, Bacteroides ovatus, contains a GH115 enzyme, BoAgu115A, which displays glucuronoxylan α-(4-O-methyl)-glucuronidase activity. The enzyme is significantly more active against substrates in which the xylose decorated with GlcA/MeGlcA is flanked by one or more xylose residues. The crystal structure of BoAgu115A revealed a four-domain protein in which the active site, comprising a pocket that abuts a cleft-like structure, is housed in the second domain that adopts a TIM barrel-fold. The third domain, a five-helical bundle, and the C-terminal β-sandwich domain make inter-chain contacts leading to protein dimerization. Informed by the structure of the enzyme in complex with GlcA in its open ring form, in conjunction with mutagenesis studies, the potential substrate binding and catalytically significant amino acids were identified. Based on the catalytic importance of residues located on a highly flexible loop, the enzyme is required to undergo a substantial conformational change to form a productive Michaelis complex with glucuronoxylan. PMID:24214982

  18. Recycled Water Reuse Permit Renewal Application for the Central Facilities Area Sewage Treatment Plant

    SciTech Connect

    Mike Lewis

    2014-09-01

    This renewal application for a Recycled Water Reuse Permit is being submitted in accordance with the Idaho Administrative Procedures Act 58.01.17 “Recycled Water Rules” and the Municipal Wastewater Reuse Permit LA-000141-03 for continuing the operation of the Central Facilities Area Sewage Treatment Plant located at the Idaho National Laboratory. The permit expires March 16, 2015. The permit requires a renewal application to be submitted six months prior to the expiration date of the existing permit. For the Central Facilities Area Sewage Treatment Plant, the renewal application must be submitted by September 16, 2014. The information in this application is consistent with the Idaho Department of Environmental Quality’s Guidance for Reclamation and Reuse of Municipal and Industrial Wastewater and discussions with Idaho Department of Environmental Quality personnel.

  19. Survival of planted tupelo seedlings in F- and H-Area tree-kill zones

    SciTech Connect

    Nelson, E.A.; Rogers, V.A.

    1995-01-01

    Swamp tupelo seedlings were planted in four areas which experienced previous tree mortality at the seeplines of the F- and H-Area Seepage Basins. The sites represented a range in severity of impact and stage of recovery. Seedlings were planted in February of 1994 and followed through the first growing season in the field. Survival on all sites through the first growing season was excellent, with greater than 92% of the seedlings still alive. Most seedlings appeared healthy with few external signs of stress. The performance of the seedlings will be followed in subsequent years to determine the physical state of the soil environment on seedling growth. Hopefully, the results will indicate that artificial reforestation can begin on similarly impacted sites prior to the beginning of natural revegetation of the site.

  20. Locations and areas of ponds and Carolina Bays at the Savannah River Plant

    SciTech Connect

    Shields, J.D.; Woody, N.D.; Dicks, A.S.; Hollod, G.J.; Schalles, J.; Leversee, G.J.

    1982-05-01

    The Savannah River Plant has 28 ponds and 190 Carolina Bays on its 192,000-acreite. Excluding the Par Pond system, the mean pond area is 17.6 acre, with a range of 0.4 to 202.8 acres. Par Pond is the largest pond, with an area of 2500 acres. The mean Carolina Bay area is 6.6 acres, with a range of less than 0.3 to 124.0 acres. The geographical location of each pond and bay has been digitized and can be graphically displayed by computer. This capability will facilitate identification of wetland areas as required by Executive Order 11990 (Protection of Wetlands, May 24, 1977).

  1. Potential assessment of establishing a renewable energy plant in a rural agricultural area.

    PubMed

    Su, Ming-Chien; Kao, Nien-Hsin; Huang, Wen-Jar

    2012-06-01

    An evaluation of the green energy potential generated from biogas and solar power, using agricultural manure waste and a photovoltaic (PV) system, was conducted in a large geographical area of a rural county with low population density and low pollution. The studied area, Shoufeng Township in Hualien County, is located in eastern Taiwan, where a large amount of manure waste is generated from pig farms that are scattered throughout the county. The objective of the study is to assess the possibility of establishing an integrated manure waste treatment plant by using the generated biogas incorporated with the PV system to produce renewable energy and then feed it back to the incorporated farms. A filed investigation, geographic information system (GIS) application, empirical equations development, and RETScreen modeling were conducted in the study. The results indicate that Shoufeng Township has the highest priority in setting up an integrated treatment and renewable energy plant by using GIS mapping within a 10-km radius of the transportation range. Two scenarios were plotted in assessing the renewable energy plant and the estimated electricity generation, plus the greenhouse gas (GHG) reduction was evaluated. Under the current governmental green energy scheme and from a long-term perspective, the assessment shows great potential in establishing the plant, especially in reducing environmental pollution problems, waste treatment, and developing suitable renewable energy. PMID:22788104

  2. Malignant tumours of the gastrointestinal tract in an area with an asbestos-cement plant.

    PubMed

    Sarić, M; Curin, K

    1996-06-01

    Data on persons who died of cancer of the gastrointestinal tract in a Croatian coastal area with an asbestos-cement plant were analysed for the period 1970-1990. By poll method applied to the families of deceased subjects, additional data on occupation, lifestyle, educational level, length of resistance and cancer mortality among relatives were collected. The investigation showed that in the study area, but also in certain narrower locations within it (subarea settlements), some of the tumours studied occurred at higher rates than expected. Although not conclusive, these findings may indicate a role of environmental exposure to asbestos, particularly in the occurrence of peritoneal mesothelioma. PMID:8635157

  3. Wastewater Land Application Permit LA-000141 Renewal Information for the Central Facilities Area Sewage Treatment Plant

    SciTech Connect

    Laboratory, Idaho National

    1999-02-01

    On July 25, 1994, the State ofldaho Division of Environmental Quality (DEQ) issued a Wastewater Land Application Permit (WLAP) for the Idaho National Engineering Laboratory's (INEL, now the Idaho National Engineering and Environmental Laboratory [INEEL]) Central Facilities Area (CFA) Sewage Treatment Plant (STP). The permit expires August 7, 1999. In addition to the renewal application, this report was prepared to provide the following information as requested by DEQ.

  4. Predicting the presence and cover of management relevant invasive plant species on protected areas.

    PubMed

    Iacona, Gwenllian; Price, Franklin D; Armsworth, Paul R

    2016-01-15

    Invasive species are a management concern on protected areas worldwide. Conservation managers need to predict infestations of invasive plants they aim to treat if they want to plan for long term management. Many studies predict the presence of invasive species, but predictions of cover are more relevant for management. Here we examined how predictors of invasive plant presence and cover differ across species that vary in their management priority. To do so, we used data on management effort and cover of invasive plant species on central Florida protected areas. Using a zero-inflated multiple regression framework, we showed that protected area features can predict the presence and cover of the focal species but the same features rarely explain both. There were several predictors of either presence or cover that were important across multiple species. Protected areas with three days of frost per year or fewer were more likely to have occurrences of four of the six focal species. When invasive plants were present, their proportional cover was greater on small preserves for all species, and varied with surrounding household density for three species. None of the predictive features were clearly related to whether species were prioritized for management or not. Our results suggest that predictors of cover and presence can differ both within and across species but do not covary with management priority. We conclude that conservation managers need to select predictors of invasion with care as species identity can determine the relationship between predictors of presence and the more management relevant predictors of cover. PMID:26599567

  5. Survival and growth of seedlings of 19 native tree and shrub species planted in degraded forest as part of a forest restoration project in Madagascar’s highlands

    PubMed Central

    Birkinshaw, Chris; Andrianjafy, Mamisoa; Rasolofonirina, Jean-Jacques

    2011-01-01

    Percentage survival and mean percentage change in height were compared for 19 native tree and shrub species planted at Ankafobe Forest, a degraded fragment of highland forest, at ten months after planting. The species varied considerably in both, survival and growth. Best performers included Macaranga alnifolia (Euphorbiaceae), Harungana madagascariensis (Clusiaceae), Filicium decipiens (Sapindaceae) and Dodonaea madagascariensis (Sapindaceae). A comparison of survival between relatively short seedlings compared to relatively tall seedlings revealed no significant difference. This information will be used to increase the efficiency of forest restoration at this site. PMID:21892357

  6. Potential of the TCE-degrading endophyte Pseudomonas putida W619-TCE to improve plant growth and reduce TCE phytotoxicity and evapotranspiration in poplar cuttings.

    PubMed

    Weyens, Nele; Truyens, Sascha; Dupae, Joke; Newman, Lee; Taghavi, Safiyh; van der Lelie, Daniel; Carleer, Robert; Vangronsveld, Jaco

    2010-09-01

    The TCE-degrading poplar endophyte Pseudomonas putida W619-TCE was inoculated in poplar cuttings, exposed to 0, 200 and 400 mg l(-1) TCE, that were grown in two different experimental setups. During a short-term experiment, plants were grown hydroponically in half strength Hoagland nutrient solution and exposed to TCE for 3 days. Inoculation with P. putida W619-TCE promoted plant growth, reduced TCE phytotoxicity and reduced the amount of TCE present in the leaves. During a mid-term experiment, plants were grown in potting soil and exposed to TCE for 3 weeks. Here, inoculation with P. putida W619-TCE had a less pronounced positive effect on plant growth and TCE phytotoxicity, but resulted in strongly reduced amounts of TCE in leaves and roots of plants exposed to 400 mg l(-1) TCE, accompanied by a lowered evapotranspiration of TCE. Dichloroacetic acid (DCAA) and trichloroacetic acid (TCAA), which are known intermediates of TCE degradation, were not detected. PMID:20598789

  7. An Aerial Radiological Survey of the Portsmouth Gaseous Diffusion Plant and Surrounding Area, Portsmouth, Ohio

    SciTech Connect

    Namdoo Moon

    2007-12-01

    An aerial radiological survey was conducted over the 16 square-mile (~41 square-kilometer) area surrounding the Portsmouth Gaseous Diffusion Plant. The survey was performed in August 2007 utilizing a large array of helicopter mounted sodium iodide detectors. The purpose of the survey was to update the previous radiological survey levels of the environment and surrounding areas of the plant. A search for a missing radium-226 source was also performed. Implied exposure rates, man-made activity, and excess bismuth-214 activity, as calculated from the aerial data are presented in the form of isopleth maps superimposed on imagery of the surveyed area. Ground level and implied aerial exposure rates for nine specific locations are compared. Detected radioisotopes and their associated gamma ray exposure rates were consistent with those expected from normal background emitters. At specific plant locations described in the report, man-made activity was consistent with the operational histories of the location. There was no spectral activity that would indicate the presence of the lost source.

  8. An evolutionary perspective on leaf economics: phylogenetics of leaf mass per area in vascular plants.

    PubMed

    Flores, Olivier; Garnier, Eric; Wright, Ian J; Reich, Peter B; Pierce, Simon; Dìaz, Sandra; Pakeman, Robin J; Rusch, Graciela M; Bernard-Verdier, Maud; Testi, Baptiste; Bakker, Jan P; Bekker, Renée M; Cerabolini, Bruno E L; Ceriani, Roberta M; Cornu, Guillaume; Cruz, Pablo; Delcamp, Matthieu; Dolezal, Jiri; Eriksson, Ove; Fayolle, Adeline; Freitas, Helena; Golodets, Carly; Gourlet-Fleury, Sylvie; Hodgson, John G; Brusa, Guido; Kleyer, Michael; Kunzmann, Dieter; Lavorel, Sandra; Papanastasis, Vasilios P; Pérez-Harguindeguy, Natalia; Vendramini, Fernanda; Weiher, Evan

    2014-07-01

    In plant leaves, resource use follows a trade-off between rapid resource capture and conservative storage. This "worldwide leaf economics spectrum" consists of a suite of intercorrelated leaf traits, among which leaf mass per area, LMA, is one of the most fundamental as it indicates the cost of leaf construction and light-interception borne by plants. We conducted a broad-scale analysis of the evolutionary history of LMA across a large dataset of 5401 vascular plant species. The phylogenetic signal in LMA displayed low but significant conservatism, that is, leaf economics tended to be more similar among close relatives than expected by chance alone. Models of trait evolution indicated that LMA evolved under weak stabilizing selection. Moreover, results suggest that different optimal phenotypes evolved among large clades within which extremes tended to be selected against. Conservatism in LMA was strongly related to growth form, as were selection intensity and phenotypic evolutionary rates: woody plants showed higher conservatism in relation to stronger stabilizing selection and lower evolutionary rates compared to herbaceous taxa. The evolutionary history of LMA thus paints different evolutionary trajectories of vascular plant species across clades, revealing the coordination of leaf trait evolution with growth forms in response to varying selection regimes. PMID:25165520

  9. An evolutionary perspective on leaf economics: phylogenetics of leaf mass per area in vascular plants

    PubMed Central

    Flores, Olivier; Garnier, Eric; Wright, Ian J; Reich, Peter B; Pierce, Simon; Dìaz, Sandra; Pakeman, Robin J; Rusch, Graciela M; Bernard-Verdier, Maud; Testi, Baptiste; Bakker, Jan P; Bekker, Renée M; Cerabolini, Bruno E L; Ceriani, Roberta M; Cornu, Guillaume; Cruz, Pablo; Delcamp, Matthieu; Dolezal, Jiri; Eriksson, Ove; Fayolle, Adeline; Freitas, Helena; Golodets, Carly; Gourlet-Fleury, Sylvie; Hodgson, John G; Brusa, Guido; Kleyer, Michael; Kunzmann, Dieter; Lavorel, Sandra; Papanastasis, Vasilios P; Pérez-Harguindeguy, Natalia; Vendramini, Fernanda; Weiher, Evan

    2014-01-01

    In plant leaves, resource use follows a trade-off between rapid resource capture and conservative storage. This “worldwide leaf economics spectrum” consists of a suite of intercorrelated leaf traits, among which leaf mass per area, LMA, is one of the most fundamental as it indicates the cost of leaf construction and light-interception borne by plants. We conducted a broad-scale analysis of the evolutionary history of LMA across a large dataset of 5401 vascular plant species. The phylogenetic signal in LMA displayed low but significant conservatism, that is, leaf economics tended to be more similar among close relatives than expected by chance alone. Models of trait evolution indicated that LMA evolved under weak stabilizing selection. Moreover, results suggest that different optimal phenotypes evolved among large clades within which extremes tended to be selected against. Conservatism in LMA was strongly related to growth form, as were selection intensity and phenotypic evolutionary rates: woody plants showed higher conservatism in relation to stronger stabilizing selection and lower evolutionary rates compared to herbaceous taxa. The evolutionary history of LMA thus paints different evolutionary trajectories of vascular plant species across clades, revealing the coordination of leaf trait evolution with growth forms in response to varying selection regimes. PMID:25165520

  10. The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1.

    PubMed

    Dong, Chun-Hai; Agarwal, Manu; Zhang, Yiyue; Xie, Qi; Zhu, Jian-Kang

    2006-05-23

    Plant responses to cold stress are mediated by a transcriptional cascade, in which the transcription factor ICE1 and possibly related proteins activate the expression of C-repeat (CRT)-binding factors (CBFs), leading to the transcription of downstream effector genes. The variant RING finger protein high expression of osmotically responsive gene (HOS)1 was identified genetically as a negative regulator of cold responses. We present evidence here that HOS1 is an E3 ligase required for the ubiquitination of ICE1. HOS1 physically interacts with ICE1 and mediates the ubiquitination of ICE1 both in vitro and in vivo. We found that cold induces the degradation of ICE1 in plants, and this degradation requires HOS1. Consistent with enhanced cold-responsive gene expression in loss-of-function hos1 mutant plants, overexpression of HOS1 represses the expression of CBFs and their downstream genes and confers increased sensitivity to freezing stress. Our results indicate that cold stress responses in Arabidopsis are attenuated by a ubiquitination/proteasome pathway in which HOS1 mediates the degradation of the ICE1 protein. PMID:16702557

  11. Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants

    SciTech Connect

    Aylward, Frank O.; Khadempour, Lily; Tremmel, Daniel; McDonald, Bradon R.; Nicora, Carrie D.; Wu, Si; Moore, Ronald J.; Orton, Daniel J.; Monroe, Matthew E.; Piehowski, Paul D.; Purvine, Samuel O.; Smith, Richard D.; Lipton, Mary S.; Burnum-Johnson, Kristin E.; Currie, Cameron R.

    2015-08-28

    Leaf-cutter ants are prolific and conspicuous Neotropical herbivores that derive energy from specialized fungus gardens they cultivate using foliar biomass. The basidiomycetous cultivar of the ants, Leucoagaricus gongylophorus, produces specialized hyphal swellings called gongylidia that serve as the primary food source of ant colonies. Gongylidia also contain lignocellulases that become concentrated in ant digestive tracts and are deposited within fecal droplets onto fresh foliar material as it is foraged by the ants. Although the enzymes concentrated by L. gongylophorus within gongylidia are thought to be critical to the initial degradation of plant biomass, only a few enzymes present in these hyphal swellings have been identified. Here we use proteomic methods to identify proteins present in the gongylidia of three Atta cephalotes colonies. Our results demonstrate that a diverse but consistent set of enzymes is present in gongylidia, including numerous lignocellulases likely involved in the degradation of polysaccharides, plant toxins, and proteins. Overall, gongylidia contained over three-quarters of all lignocellulases identified in the L. gongylophorus genome, demonstrating that the majority of the enzymes produced by this fungus for biomass breakdown are ingested by the ants. We also identify a set of 23 lignocellulases enriched in gongylidia compared to whole fungus garden samples, suggesting that certain enzymes may be particularly important in the initial degradation of foliar material. Our work sheds light on the complex interplay between leaf-cutter ants and their fungal symbiont that allows for the host insects to occupy an herbivorous niche by indirectly deriving energy from plant biomass.

  12. A new spectrofluorometric method for the determination of chlorophylls and degradation products and its application in two frontal areas of the Argentine Sea

    NASA Astrophysics Data System (ADS)

    Lutz, Vivian A.; Carreto, JoséI.

    1991-05-01

    An improved spectrofluorometric method for the determination of chlorophylls a, b, c and chlorophyll a degradation products was developed. A simple hexane-aqueous acetone partition was employed to separate phytolated from non-phytolated porphyrins. The spectrofluorometric measurement of those phases allows the calculation of the concentration of chlorophylls a, b and c, phaeophytin a, phaeophorbide a and chlorophyllide a. A comparison between the new method and those commonly used on phytoplankton cultures showed that for fresh cultures, without degradation products, chlorophyll concentrations agreed with those of the reference method ( JEFFREY and HUMPHREY, 1975 , Biochemical Physiological Pflanzen, 167, 191-194). When accessory chlorophylls and degradation products are present, the new method allowed calculations of the concentrations of each of the mixture components, which cannot be determined by routine methods. The spatial distribution of chlorophylls a, b and c and chlorophyll a degradation products in two frontal areas of the Argentine Sea was studied. The tidal frontal system of the Peninsula Valdés has been hydrographically associated with the development of red tide phenomena. The distribution of the photosynthetic pigments along a transect through this typical front structure was studied during a bloom of the dinoflagellate Prorocentrum micans, in January 1986. Results from a transect in the Buenos Aires province shelf cross a shelf-break front showed an autumn bloom of diatoms. Variations in the proportions of the different pigments are discussed in relation to the predominant phytoplankton communities.

  13. Impacts of urban expansion and future green planting on summer precipitation in the Beijing metropolitan area

    NASA Astrophysics Data System (ADS)

    Zhang, Chao Lin; Chen, Fei; Miao, Shi Guang; Li, Qing Chun; Xia, Xiang Ao; Xuan, Chun Yi

    2009-01-01

    In this study, an analysis of long-term rainfall data reveals that the rapid urban expansion in Beijing since 1981 is statistically correlated to summer rainfall reduction in the northeast areas of Beijing from 1981 to 2005. This coincides with the period in which the shortage of water in the Beijing area has become a serious factor for sustainable economic development. Meanwhile, an analysis of the aerosol optical depth (AOD) from the Total Ozone Mapping Spectrometer spanning the years from 1980 to 2001 shows that there is no clear secular trend in summer AOD in Beijing. With the particular purpose of further understanding the effects of urban expansion on summer rainfall and the potential measures to mitigate such effects, a mesoscale weather/land-surface/urban-coupled model along with different urban land-use change scenarios are used to conduct numerical simulations for two selected heavy summer rainfall events with different, but representative, summer weather patterns in Beijing. Results show that urban expansion can produce less evaporation, higher surface temperatures, larger sensible heat fluxes, and a deeper boundary layer. This leads to less water vapor, more mixing of water vapor in the boundary layer, and hence less (more) convective available potential energy (convective inhibition energy). The combination of these factors induced by expanding urban surfaces is helpful in reducing precipitation for the Beijing area in general and, in particular, for the Miyun reservoir area (the major source for the local water supply). Increasing green vegetation coverage in the Beijing area would produce more rainfall, and model results show that planting grass seems more effective than planting trees. For the same vegetation, the rainfall difference from simulations using two green-planting layouts (annular and cuneiform) is small.

  14. Potential for Microbial Degradation of cis-Dichloroethene and Vinyl Chloride in Streambed Sediment at the U.S. Department of Energy, Kansas City Plant, Missouri, 2008

    USGS Publications Warehouse

    Bradley, Paul M.

    2009-01-01

    A series of carbon-14 (14C) radiotracer-based microcosm experiments was conducted to assess the mechanisms and products of degradation of cis-dichloroethene (cis-DCE) and vinyl chloride (VC) in streambed sediments at the U.S. Department of Energy, Kansas City Plant in Kansas City, Missouri. The focus of the investigation was the potential for biotic and abiotic cis-DCE and VC degradation in surficial and underlying hyporheic sediment from the Blue River and its tributaries, Indian Creek and Boone Creek. Substantial degradation of [1,2-14C] cis-DCE and [1,2-14C] VC to 14C-carbon dioxide (14CO2) was observed in all viable surficial sediment microcosms prepared under oxic conditions. No significant accumulation of reductive dechlorination products was observed under these oxic incubation conditions. The results indicate that microbial mineralization processes involving direct oxidation or co-metabolic oxidation are the primary mechanisms of cis-DCE and VC biodegradation in oxic stream sediment at the Kansas City Plant. Substantial mineralization of [1,2-14C] VC also was observed in all viable surficial sediment microcosms incubated in the absence of detectable oxygen (dissolved oxygen concentrations less than 25 micrograms per liter). In general, the accumulation of mineralization products (14CO2 and 14C-methane [14CH4]) predominated with only trace-level detection of the reductive dechlorination product, 14C-ethene. In contrast, microbial degradation of [1,2-14C] cis-DCE by reductive dechlorination or mineralization was not significant in the absence of detectable oxygen. The potential for [1,2-14C] VC biodegradation also was significant in sediments from the deeper hyporheic zones under oxic conditions and in the absence of detectable oxygen. In this study, microbial degradation of [1,2-14C] cis-DCE was not significant in hyporheic sediment treatments under either oxygen condition. Taken together, the results indicate that microbial mineralization processes in

  15. Degradation behaviour of Al-Fe coatings in wet-seal area of molten carbonate fuel cells

    NASA Astrophysics Data System (ADS)

    Jun, JaeHo; Jun, JoongHwan; Kim, KyooYoung

    The corrosion resistance of Al-Fe coatings increases as a protective LiAlO 2 layer forms. If, however, the Al-Fe coatings lack sufficient aluminium for maintaining this protective layer, the corrosion resistance of the coating is degraded by the growth of non-protective scales, such as LiFeO 2. In this study, the degradation behaviour of Al-Fe coatings is investigated in the wet-seal environment of molten carbonate fuel cells (MCFC). Al-Fe coated specimens with various amounts of aluminium in the range 8-70 at.% and bulk specimens of Fe-23.9 Al (at.%) are prepared. A corrosion test is performed in Li/K carbonate systems at 650 °C with a single-cell and an immersion test. Test results reveal that aluminium contents in the coatings should be higher than 25 at.% in order to form and maintain a protective LiAlO 2 layer. In addition to aluminium content, the influence of microstructural features on the degradation behaviour of Al-Fe coatings is discussed.

  16. Environmental study for pollution in the area of Megalopolis power plant (Peloponnesos, Greece)

    NASA Astrophysics Data System (ADS)

    Sarris, Apostolos; Kokinou, Eleni; Aidona, Eleni; Kallithrakas-Kontos, Nikolaos; Koulouridakis, Pavlos; Kakoulaki, Georgia; Droulia, Kassiani; Damianovits, Ourania

    2009-10-01

    The main purpose of the present study is to investigate the suitability of magnetic properties in correlation to geochemical measurements as a pollution-monitoring tool and study the metal transmission factors in an area around a major local source, namely a lignite-burning power plant. Surface soil samples were collected in the wide area of the power plant of Megalopolis (Peloponnesos, Greece). The magnetic susceptibility and other magnetic properties of the surface soils were originally measured and mapped. Loci of high values of magnetic susceptibility within the study area gave rise to further analyze the soil samples for metal concentrations. GIS techniques were used for mapping all the chemical constituent concentrations and the magnetic measurements on the various topographic and geological features of the area. Maps were created through interpolation algorithms indicating the spatial distribution of the above measurements. Spatial tools and statistical analysis through the calculation of Pearson’s coefficients proved the correlation between magnetic properties, metal concentrations and the terrain attributes (especially the geological structure and the wind currents) of the region.

  17. Work plan for the remedial investigation/feasibility study for the groundwater operable units at the Chemical Plant Area and the Ordnance Works Area, Weldon Spring, Missouri

    SciTech Connect

    1995-08-01

    US Department of Energy (DOE) and the US Army Corps of Engineers (CE) are conducting cleanup activities at two properties, the chemical plant area and the ordnance works area, located adjacent to one another in St. Charles County, Missouri. In accordance with the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA), as amended, DOE and CE are evaluating conditions and potential responses at the chemical plant area and at the ordnance works area, respectively, to address groundwater and surface water contamination. This work plan provides a comprehensive evaluation of areas that are relevant to the (GWOUs) of both the chemical plant and the ordnance works area. Following areas or media are addressed in this work plan: groundwater beneath the chemical plant area (including designated vicinity properties described in Section 5 of the RI for the chemical plant area [DOE 1992d]) and beneath the ordnance works area; surface water and sediment at selected springs, including Burgermeister Spring. The organization of this work plan is as follows: Chapter 1 discusses the objectives for conducting the evaluation, including a summary of relevant site information and overall environmental compliance activities to be undertaken; Chapter 2 presents a history and a description of the site and areas addressed within the GWOUs, along with currently available data; Chapter 3 presents a preliminary evaluation of areas included in the GWOUs, which is based on information given in Section 2, and discusses data requirements; Chapter 4 presents rationale for data collection or characterization activities to be carried out in the remedial investigation (RI) phase, along with brief summaries of supporting documents ancillary to this work plan; Chapter 5 discusses the activities planned for GWOUs under each of the 14 tasks for an remedial (RI/FS); Chapter 6 presents proposed schedules for RI/FS for the GWOUS; and Chapter 7 explains the project management structure.

  18. Pioneer plant species contributing to phytoestabilization of contaminated soils in mine areas

    NASA Astrophysics Data System (ADS)

    João Batista, Maria; Gonzalez-Fernandez, Oscar; Abreu, Maria Manuela; Carvalho, Luisa; Queralt, Ignasi

    2013-04-01

    Young and mature leaves from several plant species of the genus Cistus L. (C. crispus, C. ladanifer, C. monspeliensis, C. salviifolius), Erica australis L., and Lavandula sampaioana (Rozeira) Rivas Mart., T.E. Díaz& Fern. Gonz., as well as soils where plants grew, were sampled in various areas of São Domingos abandoned mine. The São Domingos mine, dating from pre-Roman times, is 60 km SE of Beja, Southeast Portugal. This mine belongs to the world class metallogenetic province of the Iberian Pyrite Belt. Sampling occurred throughout spring and winter to better understand plant behaviour and natural attenuation of contaminated soils. Multiple Correspondence Analysis (MCA) was used to synthesize the information and group characteristics that could justify different chemical concentrations. Soils are extremely acid (pH between 3.4 and 5.2) and present a wide range of Corganic concentrations (10.2-109 g/kg). Total nitrogen and extractable phosphorus concentrations are low to very low, but extractable potassium show medium to high concentrations. Chemical elements concentrations, analysed for total fraction, were great in soils, especially arsenic and lead that can attain 7.6 g/kg and 17.2 g/kg, respectively. However, only a small percentage (in general < 1%) of the total concentration of the chemical elements were water soluble (extracted by DIN 38414-S4 method) or extracted with the DTPA or ammonium acetate aqueous solutions. Cistus plants showed different behaviour on the trace-elements uptake and translocation. Winter and spring variations in most chemical elements concentrations in the plants leaves are not significantly different, except for arsenic, probably because plants were not exposed to important dry conditions during the sampling seasons. Nevertheless, MCA of the individuals makes a clear distinction between winter and spring leaves. Generally, mature leaves have higher concentrations of arsenic, copper, iron, lead, manganese and zinc than younger ones

  19. Solar CPC pilot plant photocatalytic degradation of bisphenol A in waters and wastewaters using suspended and supported-TiO2. Influence of photogenerated species.

    PubMed

    Saggioro, Enrico Mendes; Oliveira, Anabela Sousa; Pavesi, Thelma; Tototzintle, Margarita Jiménez; Maldonado, Manuel Ignacio; Correia, Fábio Verissimo; Moreira, Josino Costa

    2014-11-01

    Photocatalytic degradation of bisphenol A (BPA) in waters and wastewaters in the presence of titanium dioxide (TiO2) was performed under different conditions. Suspensions of the TiO2 were used to compare the degradation efficiency of BPA (20 mg L(-1)) in batch and compound parabolic collector (CPC) reactors. A TiO2 catalyst supported on glass spheres was prepared (sol-gel method) and used in a CPC solar pilot plant for the photodegradation of BPA (100 μg L(-1)). The influence of OH·, O2 (·-), and h (+) on the BPA degradation were evaluated. The radicals OH· and O2 (·-) were proved to be the main species involved on BPA photodegradation. Total organic carbon (TOC) and carboxylic acids were determined to evaluate the BPA mineralization during the photodegradation process. Some toxicological effects of BPA and its photoproducts on Eisenia andrei earthworms were evaluated. The results show that the optimal concentration of suspended TiO2 to degrade BPA in batch or CPC reactors was 0.1 g L(-1). According to biological tests, the BPA LC50 in 24 h for E. andrei was of 1.7 × 10(-2) mg cm(-2). The photocatalytic degradation of BPA mediated by TiO2 supported on glass spheres suffered strong influence of the water matrix. On real municipal wastewater treatment plant (MWWTP) secondary effluent, 30 % of BPA remains in solution; nevertheless, the method has the enormous advantage since it eliminates the need of catalyst removal step, reducing the cost of treatment. PMID:24627201

  20. A checklist of plant and animal species at Los Alamos National Laboratory and surrounding areas

    SciTech Connect

    Hinojosa, H.

    1998-02-01

    Past and current members of the Biology Team (BT) of the Ecology Group have completed biological assessments (BAs) for all of the land that comprises Los Alamos National Laboratory (LANL). Within these assessments are lists of plant and animal species with the potential to exist on LANL lands and the surrounding areas. To compile these lists, BT members examined earlier published and unpublished reports, surveys, and data bases that pertained to the biota of this area or to areas that are similar. The species lists that are contained herein are compilations of the lists from these BAs, other lists that were a part of the initial research for the performance of these BAs, and more recent surveys.

  1. Volatile organic compound emissions from usaf wastewater treatment plants in ozone nonattainment areas. Master's thesis

    SciTech Connect

    Ouellette, B.A.

    1994-09-01

    In accordance with the 1990 Clean Air Act Amendments (CAAA), this research conducts an evaluation of the potential emission of volatile organic compounds (VOCs) from selected Air Force wastewater treatment plants. Using a conservative mass balance analysis and process specific simulation models, volatile organic emission estimates are calculated for four individual facilities--Edwards AFB, Luke AFB, McGuire AFB, and McClellan AFB--which represent a cross section of the current inventory of USAF wastewater plants in ozone nonattainment areas. From these calculations, maximum facility emissions are determined which represent the upper limit for the potential VOC emissions from these wastewater plants. Based on the calculated emission estimates, each selected wastewater facility is evaluated as a potential major stationary source of volatile organic emissions under both Title I of the 1990 CAAA and the plant's governing Clean Air Act state implementation plan. Next, the potential impact of the specific volatile organics being emitted is discussed in terms of their relative reactivity and individual contribution to tropospheric ozone formation. Finally, a relative comparison is made between the estimated VOC emissions for the selected wastewater facilities and the total VOC emissions for their respective host installations.

  2. Deletion of a gene cluster encoding pectin degrading enzymes in Caldicellulosiruptor bescii reveals an important role for pectin in plant biomass recalcitrance

    DOE PAGESBeta

    Chung, Daehwan; Pattathil, Sivakumar; Biswal, Ajaya K.; Hahn, Michael G.; Mohnen, Debra; Westpheling, Janet

    2014-10-10

    A major obstacle, and perhaps the most important economic barrier to the effective use of plant biomass for the production of fuels, chemicals, and bioproducts, is our current lack of knowledge of how to efficiently and effectively deconstruct wall polymers for their subsequent use as feedstocks. Plants represent the most desired source of renewable energy and hydrocarbons because they fix CO2, making their use carbon neutral. Their biomass structure, however, is a barrier to deconstruction, and this is often referred to as recalcitrance. Members of the bacterial genus Caldicellulosiruptor have the ability to grow on unpretreated plant biomass and thusmore » provide an assay for plant deconstruction and biomass recalcitrance. Using recently developed genetic tools for manipulation of these bacteria, a deletion of a gene cluster encoding enzymes for pectin degradation was constructed, and the resulting mutant was reduced in its ability to grow on both dicot and grass biomass, but not on soluble sugars. The plant biomass from three phylogenetically diverse plants, Arabidopsis (a herbaceous dicot), switchgrass (a monocot grass), and poplar (a woody dicot), was used in these analyses. These biomass types have cell walls that are significantly different from each other in both structure and composition. While pectin is a relatively minor component of the grass and woody dicot substrates, the reduced growth of the mutant on all three biomass types provides direct evidence that pectin plays an important role in biomass recalcitrance. Glycome profiling of the plant material remaining after growth of the mutant on Arabidopsis biomass compared to the wild-type revealed differences in the rhamnogalacturonan I, homogalacturonan, arabinogalactan, and xylan profiles. In contrast, only minor differences were observed in the glycome profiles of the switchgrass and poplar biomass. In conclusion, the combination of microbial digestion and plant biomass analysis provides a new and

  3. Deletion of a gene cluster encoding pectin degrading enzymes in Caldicellulosiruptor bescii reveals an important role for pectin in plant biomass recalcitrance

    SciTech Connect

    Chung, Daehwan; Pattathil, Sivakumar; Biswal, Ajaya K.; Hahn, Michael G.; Mohnen, Debra; Westpheling, Janet

    2014-10-10

    A major obstacle, and perhaps the most important economic barrier to the effective use of plant biomass for the production of fuels, chemicals, and bioproducts, is our current lack of knowledge of how to efficiently and effectively deconstruct wall polymers for their subsequent use as feedstocks. Plants represent the most desired source of renewable energy and hydrocarbons because they fix CO2, making their use carbon neutral. Their biomass structure, however, is a barrier to deconstruction, and this is often referred to as recalcitrance. Members of the bacterial genus Caldicellulosiruptor have the ability to grow on unpretreated plant biomass and thus provide an assay for plant deconstruction and biomass recalcitrance. Using recently developed genetic tools for manipulation of these bacteria, a deletion of a gene cluster encoding enzymes for pectin degradation was constructed, and the resulting mutant was reduced in its ability to grow on both dicot and grass biomass, but not on soluble sugars. The plant biomass from three phylogenetically diverse plants, Arabidopsis (a herbaceous dicot), switchgrass (a monocot grass), and poplar (a woody dicot), was used in these analyses. These biomass types have cell walls that are significantly different from each other in both structure and composition. While pectin is a relatively minor component of the grass and woody dicot substrates, the reduced growth of the mutant on all three biomass types provides direct evidence that pectin plays an important role in biomass recalcitrance. Glycome profiling of the plant material remaining after growth of the mutant on Arabidopsis biomass compared to the wild-type revealed differences in the rhamnogalacturonan I, homogalacturonan, arabinogalactan, and xylan profiles. In contrast, only minor differences were observed in the glycome profiles of the switchgrass and poplar biomass. In conclusion, the combination of microbial digestion and plant biomass analysis provides a new

  4. 'Long-Cell Action' Corrosion: A Basic Mechanism Hidden Behind Components Degradation Issues in Nuclear Power Plants

    SciTech Connect

    Genn Saji

    2006-07-01

    In spite of industries' effort over the last 40 years, corrosion-related issues continue to be one of the largest unresolved problems for nuclear power plants worldwide. There are several types of strange corrosion phenomena from the point of view of our current understanding of corrosion science established in other fields. Some of these are IGSCC, PWSCC, AOA, and FAC (Erosion-Corrosion). Through studying and coping with diverse corrosion phenomena, the author believes that they share a common basis with respect to the assumed corrosion mechanism (e.g., 'local cell action' hypothesis). In general, local cell action is rarely severe since it produces a fairly uniform corrosion. The 'long cell action' that transports electrons through structures far beyond the region of local cell corrosion activities has been identified as a basic mechanism in soil corrosion. If this mechanism is assumed in nuclear power plants, the structure becomes anodic in the area where the potential is less positive and cathodic where this potential is more positive. Metallic ions generated at anodic corrosion sites are transported to remote cathodic sites through the circulation of water and deposits as corrosion products. The SCC, FAC (E-C) and PWSCC occur in the anodic sites as the structure itself acts as a short-circuiting conductor between the two sites, the action is similar to a galvanic cell but in a very large scale. This situation is the same as a battery that has been short-circuited at the terminals. No apparent external potential difference exists between the two electrodes, but an electrochemical reaction is still taking place inside the battery cell with a large internal short current. In this example what is important is the potential difference between the local coolant and the surface of the structural material. Long cell action corrosion is likely enhancing the local cell action's anodic corrosion activities, such as SCC, FAC/E-C, and PWSCC. It tends to be more hazardous

  5. Plant canopy gap-size analysis theory for improving optical measurements of leaf-area index

    NASA Astrophysics Data System (ADS)

    Chen, Jing M.; Cihlar, Josef

    1995-09-01

    Optical instruments currently available for measuring the leaf-area index (LAI) of a plant canopy all utilize only the canopy gap-fraction information. These instruments include the Li-Cor LAI-2000 Plant Canopy Analyzer, Decagon, and Demon. The advantages of utilizing both the canopy gap-fraction and gap-size information are shown. For the purpose of measuring the canopy gap size, a prototype sunfleck-LAI instrument named Tracing Radiation and Architecture of Canopies (TRAC), has been developed and tested in two pure conifer plantations, red pine (Pinus resinosa Ait.) and jack pine (Pinus banksiana Lamb). A new gap-size-analysis theory is presented to quantify the effect of canopy architecture on optical measurements of LAI based on the gap-fraction principle. The theory is an improvement on that of Lang and Xiang [Agric. For. Meteorol. 37, 229 (1986)]. In principle, this theory can be used for any heterogeneous canopies.

  6. Mapping suitability areas for concentrated solar power plants using remote sensing data

    DOE PAGESBeta

    Omitaomu, Olufemi A.; Singh, Nagendra; Bhaduri, Budhendra L.

    2015-05-14

    The political push to increase power generation from renewable sources such as solar energy requires knowing the best places to site new solar power plants with respect to the applicable regulatory, operational, engineering, environmental, and socioeconomic criteria. Therefore, in this paper, we present applications of remote sensing data for mapping suitability areas for concentrated solar power plants. Our approach uses digital elevation model derived from NASA s Shuttle Radar Topographic Mission (SRTM) at a resolution of 3 arc second (approx. 90m resolution) for estimating global solar radiation for the study area. Then, we develop a computational model built on amore » Geographic Information System (GIS) platform that divides the study area into a grid of cells and estimates site suitability value for each cell by computing a list of metrics based on applicable siting requirements using GIS data. The computed metrics include population density, solar energy potential, federal lands, and hazardous facilities. Overall, some 30 GIS data are used to compute eight metrics. The site suitability value for each cell is computed as an algebraic sum of all metrics for the cell with the assumption that all metrics have equal weight. Finally, we color each cell according to its suitability value. Furthermore, we present results for concentrated solar power that drives a stream turbine and parabolic mirror connected to a Stirling Engine.« less

  7. Mapping suitability areas for concentrated solar power plants using remote sensing data

    SciTech Connect

    Omitaomu, Olufemi A.; Singh, Nagendra; Bhaduri, Budhendra L.

    2015-05-14

    The political push to increase power generation from renewable sources such as solar energy requires knowing the best places to site new solar power plants with respect to the applicable regulatory, operational, engineering, environmental, and socioeconomic criteria. Therefore, in this paper, we present applications of remote sensing data for mapping suitability areas for concentrated solar power plants. Our approach uses digital elevation model derived from NASA s Shuttle Radar Topographic Mission (SRTM) at a resolution of 3 arc second (approx. 90m resolution) for estimating global solar radiation for the study area. Then, we develop a computational model built on a Geographic Information System (GIS) platform that divides the study area into a grid of cells and estimates site suitability value for each cell by computing a list of metrics based on applicable siting requirements using GIS data. The computed metrics include population density, solar energy potential, federal lands, and hazardous facilities. Overall, some 30 GIS data are used to compute eight metrics. The site suitability value for each cell is computed as an algebraic sum of all metrics for the cell with the assumption that all metrics have equal weight. Finally, we color each cell according to its suitability value. Furthermore, we present results for concentrated solar power that drives a stream turbine and parabolic mirror connected to a Stirling Engine.

  8. Plant community development within the F- and H-Area tree-kill zone

    SciTech Connect

    Nelson, E.A.; Westbury, H.M. Jr.

    1994-10-01

    The F- and H-Area Seepage Basins received liquid waste from the F and H chemical separation facilities from 1955 through 1988. Tree mortality in seepline fed wetlands down-slope from the basins was observed in the late 1970`s, and investigations were conducted to determine the cause and source of the impacts. Analysis of the soil and water in the tree-kill zones demonstrated a strong chemical linkage with the F- and H-Area seepage basins. Although no single cause of the mortality was determined, it was believed to be the result of interactions of alterations in the hydrology and erosional deposition, along with lowering of pH and increased conductivity, sodium, aluminum, and nitrogen compounds. A mild drought during the growing season may also have increased the concentration of the chemical contaminants in the soils matrix. In 1988, the F- and H-Area Seepage Basins were closed and covered with a clay cap to reduce the rate of dispersion of the contaminants in the soil beneath the basins. Subsequent studies of the chemical composition of the tree-kill zone groundwater and toxicological characteristics of the seepline soil have shown a reduced contaminant flux. In 1993, an initial vegetation study was undertaken to determine the level of recovery by the plant communities in the tree-kill zones. This study repeats the initial vegetation investigation in order to further analyze and characterize the recovery of plant communities in the zones after an additional year of growth.

  9. Studying the organization of genes encoding plant cell wall degrading enzymes in Chrysomela tremula provides insights into a leaf beetle genome.

    PubMed

    Pauchet, Y; Saski, C A; Feltus, F A; Luyten, I; Quesneville, H; Heckel, D G

    2014-06-01

    The ability of herbivorous beetles from the superfamilies Chrysomeloidea and Curculionoidea to degrade plant cell wall polysaccharides has only recently begun to be appreciated. The presence of plant cell wall degrading enzymes (PCWDEs) in the beetle's digestive tract makes this degradation possible. Sequences encoding these beetle-derived PCWDEs were originally identified from transcriptomes and strikingly resemble those of saprophytic and phytopathogenic microorganisms, raising questions about their origin; e.g. are they insect- or microorganism-derived? To demonstrate unambiguously that the genes encoding PCWDEs found in beetle transcriptomes are indeed of insect origin, we generated a bacterial artificial chromosome library from the genome of the leaf beetle Chrysomela tremula, containing 18 432 clones with an average size of 143 kb. After hybridizing this library with probes derived from 12 C. tremula PCWDE-encoding genes and sequencing the positive clones, we demonstrated that the latter genes are encoded by the insect's genome and are surrounded by genes possessing orthologues in the genome of Tribolium castaneum as well as in three other beetle genomes. Our analyses showed that although the level of overall synteny between C. tremula and T. castaneum seems high, the degree of microsynteny between both species is relatively low, in contrast to the more closely related Colorado potato beetle. PMID:24456018

  10. Ricin A chain without its partner B chain is degraded after retrotranslocation from the endoplasmic reticulum to the cytosol in plant cells

    PubMed Central

    Di Cola, Alessandra; Frigerio, Lorenzo; Lord, J. Michael; Ceriotti, Aldo; Roberts, Lynne M.

    2001-01-01

    When expressed in tobacco cells, the catalytic subunit of the dimeric ribosome inactivating protein, ricin, is first inserted into the endoplasmic reticulum (ER) and then degraded in a manner that can be partially inhibited by the proteasome inhibitor clasto-lactacystin β-lactone. Consistent with the implication of cytosolic proteasomes, degradation of ricin A chain is brefeldin A-insensitive and the polypeptides that accumulate in the presence of the proteasome inhibitor are not processed in a vacuole-specific fashion. Rather, these stabilized polypeptides are in part deglycosylated by a peptide:N-glycanase-like activity. Taken together, these results indicate that ricin A chain, albeit a structurally native protein, can behave as a substrate for ER to cytosol export, deglycosylation in the cytosol, and proteasomal degradation. Furthermore, retrotranslocation of this protein is not tightly coupled to proteasomal activity. These data are consistent with the hypothesis that ricin A chain can exploit the ER-associated protein degradation pathway to reach the cytosol. Although well characterized in mammalian and yeast cells, the operation of a similar pathway to the cytosol of plant cells has not previously been demonstrated. PMID:11734657

  11. Bioaugmentation with Petroleum-Degrading Consortia Has a Selective Growth-Promoting Impact on Crop Plants Germinated in Diesel Oil-Contaminated Soil.

    PubMed

    Graj, Weronika; Lisiecki, Piotr; Szulc, Alicja; Chrzanowski, Lukasz; Wojtera-Kwiczor, Joanna

    2013-01-01

    Rhizoremediation is a complex type of green clean-up technology that involves both plants and the rhizosphere-associated microorganisms to decompose hazardous compounds. The success of the strategy strongly depends on plant tolerance towards the pollutant, as well as plant's interactions with the rhizospheric microbes. The microorganisms may be stimulated by the secreted root exudates, which results in an increased breakdown of contaminants in the rhizosphere. The main goal of this study was to establish a potential rhizoremediation combination for a diesel-polluted site. Inoculation of plant roots or seeds with indigenous rhizospheric populations is a common approach in the rhizoremediation. However, we introduced hydrocarbon-degrading consortia (M10, R3, and K52) that were previously isolated from crude oil-contaminated soil instead of indigenous microbes. Bioaugmentation with these petroleum degraders was applied to screen four high biomass crop species (Indian mustard, alfalfa, high erucic acid rapeseed, HEAR, and low erucic acid rapeseed, LEAR) for their tolerance towards diesel oil. At no pollution, a promoting effect of M10 bacteria could be observed on germination and root elongation of all plant species. Moreover, M10 consortiums increased the germination index at 6,000 mg diesel oil per kilogram dry soil in the case of Indian mustard, alfalfa, and HEAR. The latter species was found to increment its dry weight upon bioaugmentation with M10 bacteria and all diesel oil treatments (6,000 and 24,000 mg diesel oil per kilogram dry soil). The initial results indicate HEAR and the M10 bacterial consortium as a promising plant-microbe tandem for a long-term rhizoremediation process. PMID:24078757

  12. An aerial radiological survey of the Robert Emmett Ginna Nuclear Power Plant and surrounding area, Ontario, New York

    SciTech Connect

    Proctor, A.E.

    1997-06-01

    Terrestrial radioactivity surrounding the Robert Emmett Ginna Nuclear Power Plant was measured using aerial radiological surveying techniques. The purpose of this survey was to document exposure rates near the plant and to identify unexpected, man-made radiation sources within the survey area. The surveyed area included land areas within a three-mile radius of the plant site. Data were acquired using an airborne detection system that employed sodium iodide, thallium-activated detectors. Exposure-rate and photopeak counts were computed from these data and plotted on aerial photographs of the survey area. Several ground-based exposure measurements were made for comparison with the aerial survey results. Exposure rates in the area surrounding the plant site varied from 6 to 10 microroentgens per hour. Man-made radiation (cobalt-60 within the plant site and cesium-1 37 directly over the reactor) was found at the plant site. In addition, small areas of suspected cesium-137 activity were found within the survey areas. Other than these small sites, the survey area was free of man-made radioac- tivity.

  13. [Aerosol size distribution of organic carbon and elemental carbon on the top of coke oven and in the plant area].

    PubMed

    Liu, Xiao-Feng; Peng, Lin; Bai, Hui-Ling; Mu, Ling; Song, Chong-Fang

    2013-08-01

    In order to investigate the characteristic of organic carbon (OC) and elemental carbon (EC) in particles on the top of coke oven and in the plant area, the particle matter samples of five size fraction including < or = 1.4 microm, 1.4-2.1 microm, 2.1-4.2 microm, 4.2-10.2 microm and > or = 10.2 microm were collected using Staplex234 cascade impactor, and OC and EC were analyzed by Elementar Analysensysteme GmbH vario EL cube. The mass concentrations of OC and EC associated with TSP on the top of coke oven were 291.6 microg x m(-3) and 255.1 microg x m(-3), while those in the plant area were 377.8 microg x m(-3) and 151.7 microg x m(-3). The mass concentration of secondary organic carbon (SOC) in particles with size of < or = 1.4 microm was 147.3 microg x m(-3) in the plant area. The value of OC/EC in particles less than 2.1 microm was 1.3 on the top of coke oven. The mass concentration of EC in TSP in the plant area was lower than that on the top of coke oven, while the mass concentration of OC in the plant area was significantly higher than that on the top of coke oven. The mass concentrations of OC and EC associated with particles less than 10.2 microm in the plant area were far higher than those in the atmosphere of area where the coke plant is located. The OC and EC in particles, which were collected both on the top of coke oven and in the plant area, were mainly enriched in fine particles. The size distribution of OC showed a clear distinction between the coke oven top and the plant area, which revealed that OC in the plant area was more preferably enriched in fine particles than that on the top of coke oven, and the same size distribution of EC was found on the top of coke oven and in the plant area. In the plant area, the mass concentration of SOC and the contribution of SOC to OC increased with the decreasing diameter in particles with diameter of less than 10.2 microm. PMID:24191535

  14. Leaf-cutting ant nests near roads increase fitness of exotic plant species in natural protected areas

    PubMed Central

    Farji-Brener, Alejandro G; Ghermandi, Luciana

    2008-01-01

    Understanding the mechanisms that promote the invasion of natural protected areas by exotic plants is a central concern for ecology. We demonstrated that nests of the leaf-cutting ant, Acromyrmex lobicornis, near roadsides promote the abundance, growth and reproduction of two exotic plant species, Carduus nutans and Onopordum acanthium, in a national park in northern Patagonia, Argentina and determine the mechanisms that produce these effects. Refuse dumps (RDs) from ant nests have a higher nutrient content than nearby non-nest soils (NNSs); foliar nutrient content and their 15N isotopic signature strongly suggest that plants reach and use these nutrients. Both species of exotic plants in RDs were 50–600% more abundant; seedlings had 100–1000% more foliar area and root and leaf biomass; and adult plants produced 100–300% more seeds than nearby NNS plants. Plants can thus gain access to and benefit from the nutrient content of ant RD, supporting the hypotheses that enhanced resource availability promotes exotic plant performance that could increase the likelihood of biological invasions. The two exotics produce an estimated of 8 385 000 more seeds ha−1 in areas with ant nests compared with areas without; this exceptional increase in seed production represents a potential threat to nearby non-invaded communities. We propose several management strategies to mitigate this threat. Removal efforts of exotics should be focused on ant RDs, where plants are denser and represent a higher source of propagules. PMID:18364316

  15. Plant community tolerant to trace elements growing on the degraded soils of São Domingos mine in the south east of Portugal: environmental implications.

    PubMed

    Freitas, H; Prasad, M N V; Pratas, J

    2004-03-01

    The selection of trace element tolerant species is a key factor to the success of remediation of degraded mine soils. Mining activities generate a large amount of waste rocks and tailings, which get deposited at the surface. The degraded soils, the waste rocks and tailings are often very unstable and will become sources of pollution. The direct effects will be the loss of cultivated land, forest or grazing land, and the overall loss of production. The indirect effects will include air and water pollution and siltation of rivers. These will eventually lead to the loss of biodiversity, amenity and economic wealth. Restoration of a vegetation cover can fulfil the objectives of stabilization, pollution control, visual improvement and removal of threats to human beings. Thus, remediation of mine spoils/tailings and biogeochemical prospecting would rely on the appropriate selection of plant species. Plant community responds differently on their ability to uptake or exclude a variety of metals. In this work, plant species were sampled from all populations established in an abandoned copper mine of São Domingos, SE Portugal. Plants belonging to 24 species, 16 genera and 13 families were collected from the degraded copper mine of São Domingos. Plant samples were analysed for total Ag, As, Cu, Ni, Pb, and Zn. The highest concentrations of metals in soils dry matter were 11217.5 mg Pb kg(-1), 1829 mg Cu kg(-1), 1291 mg As kg(-1), 713.7 mg Zn kg(-1), 84.6 mg Cr kg(-1), 54.3 mg Co kg(-1), 52.9 mg Ni kg(-1) and 16.6 mg Ag kg(-1). With respect to plants, the higher concentrations of Pb and As were recorded in the semi-aquatic species Juncus conglomeratus with 84.8 and 23.5 mg kg(-1) dry weight (DW), Juncus efusus with 22.4 and 8.5 mg kg(-1) DW, and Scirpus holoschoenus with 51.7 and 8.0 mg kg(-1) DW, respectively. Thymus mastichina also showed high content of As in the aboveground parts, 13.6 mg kg(-1) DW. Overall, the results indicate accumulation of various metals by

  16. Central composite design optimization of pilot plant fluidized-bed heterogeneous Fenton process for degradation of an azo dye.

    PubMed

    Aghdasinia, Hassan; Bagheri, Rasoul; Vahid, Behrouz; Khataee, Alireza

    2016-11-01

    Optimization of Acid Yellow 36 (AY36) degradation by heterogeneous Fenton process in a recirculated fluidized-bed reactor was studied using central composite design (CCD). Natural pyrite was applied as the catalyst characterized by X-ray diffraction and scanning electron microscopy. The CCD model was developed for the estimation of degradation efficiency as a function of independent operational parameters including hydrogen peroxide concentration (0.5-2.5 mmol/L), initial AY36 concentration (5-25 mg/L), pH (3-9) and catalyst dosage (0.4-1.2 mg/L). The obtained data from the model are in good agreement with the experimental data (R(2 )= 0.964). Moreover, this model is applicable not only to determine the optimized experimental conditions for maximum AY36 degradation, but also to find individual and interactive effects of the mentioned parameters. Finally, gas chromatography-mass spectroscopy (GC-MS) was utilized for the identification of some degradation intermediates and a plausible degradation pathway was proposed. PMID:26934385

  17. Fluorine concentration in snow cover within the impact area of aluminium production plant (Krasnoyarsk city) and coal and gas-fired power plant (Tomsk city)

    NASA Astrophysics Data System (ADS)

    Talovskaya, A. V.; Osipova, N. A.; Filimonenko, E. A.; Polikanova, S. A.; Samokhina, N. P.; Yazikov, E. G.; Matveenko, I. A.

    2015-11-01

    The fluorine contents in snow melt water find in the impact areas of aluminum production plant and coal and gas-fired power plant are compared. In melt water, soluble fluoride is found in the form of fluoride ion, the content of which was determined by the potentiometric method using ion-selective electrode. According to the measurements of 2013-2014, fluoride content in melt water ranges 10.6-15.4 mg/dm3 at the distance 1-3 km from the borders of Krasnoyarsk aluminum plant with the mean value 13.1 mg/dm3. Four-year monitoring from 2012 to 2015 in the impact area of Tomsk coal and gas-fired power plant showed that fluoride content in melt water in vicinity of the thermal power plant is significantly lower than in the samples from the impact area of the aluminum plant. But higher content of fluoride ion (0.2 - 0.3 mg/dm3) in snow samples in vicinity of coal and gas-fired power plant was revealed in winter of 2015. Intake of soluble fluoride is mostly explained by dust-aerosol emissions of study plants and deposition of fluorine compounds from air.

  18. Soil biochar amendment in a nature restoration area: effects on plant productivity and community composition.

    PubMed

    van de Voorde, Tess F J; Bezemer, T Martijn; Van Groenigen, Jan Willem; Jeffery, Simon; Mommer, Liesje

    2014-07-01

    Biochar (pyrolyzed biomass) amendment to soils has been shown to have a multitude of positive effects, e.g., on crop yield, soil quality, nutrient cycling, and carbon sequestration. So far the majority of studies have focused on agricultural systems, typically with relatively low species diversity and annual cropping schemes. How biochar amendment affects plant communities in more complex and diverse ecosystems that can evolve over time is largely unknown. We investigated such effects in a field experiment at a Dutch nature restoration area. In April 2011, we set up an experiment using biochar produced from cuttings collected from a local natural grassland. The material was pyrolyzed at 400 degrees C or at 600 degrees C. After biochar or residue (non-pyrolyzed cuttings) application (10 Mg/ha), all plots, including control (0 Mg/ ha) plots, were sown with an 18-species grassland mixture. In August 2011, we determined characteristics of the developed plant community, as well as soil nutrient status. Biochar amendment did not alter total plant productivity, but it had a strong and significant effect on plant community composition. Legumes were three times as abundant and individual legume plants increased four times in biomass in plots that received biochar as compared to the control treatment. Biomass of the most abundant forb (Plantago lanceolata) was not affected by biochar addition. Available phosphorous, potassium, and pH were significantly higher in soils that received biochar than in Control soils. The rate of biological nitrogen fixation and seed germination were not altered by biochar amendment, but the total amount of biological N fixed per Trifolium pratense (red clover) plant was more than four times greater in biochar-amended soil. This study demonstrates that biochar amendment has a strong and rapid effect on plant communities and soil nutrients. Over time these changes may cascade up to other trophic groups, including above- and belowground organisms

  19. Potash ore reserves in the proposed Waste Isolation Pilot Plant area, Eddy County, southeastern New Mexico

    USGS Publications Warehouse

    John, Charles B.; Cheeseman, R.J.; Lorenz, J.C.; Millgate, M.L.

    1978-01-01

    The proposed Waste Isolation Pilot Plant (WIPP) area includes about 18,960 acres in Tps. 22 and 23 S., Rs. 30 and 31 E., New Mexico Principal Meridian, Eddy County, southeastern New Mexico. It is located within the Carlsbad Mining District about 25 miles east of Carlsbad. The WIPP area is immediately south of the Capitan Limestone subcrop, which formed the northern margin of the Delaware basin in Permian time. During Late Permian (Ochoan) time, gypsum, anhydrite, and halite were deposited in the seas of the Delaware basin to form the Castile Formation. These deposits have a maximum thickness of about 2,000 feet and grade upward into the more argillaceous beds of the Salado Formation. The Salado Formation contains abundant sulfate minerals, notably anhydrite and polyhalite. The potash ore minerals, langbeinite and sylvite, occur in the upper part of the Salado Formation in the McNutt potash zone, a local name applied to a potassium-rich zone.

  20. Land degradation and Poverty in maize producing areas of Kenya - Development of an interdisciplinary analysis framework using GIS and remote sensing

    NASA Astrophysics Data System (ADS)

    Graw, Valerie; Nkonya, Ephraim; Menz, Gunter

    2014-05-01

    Land degradation causes poverty and vice versa. But both processes are highly complex, hard to predict and to mitigate, and need insights from different perspectives. Therefore an interdisciplinary framework for the understanding of land degradation processes by linking biophysical data with socio-economic trends is necessary. Agricultural systems in Kenya are affected by land degradation and especially recent developments such as agricultural innovations including the use of hybrid seeds and chemical fertilizer have an impact on the environment. Vegetation analysis, used as a proxy indicator for the status of land is carried out to monitor environmental changes in maize producing areas of western Kenya. One of the methods used in this study includes time series analysis of vegetation data from 2001 to 2010 based on MODIS NDVI data with 250m and 500m resolution. Occurring trends are linked to rainfall estimation data and annually classified land use cover data with 500m resolution based on MODIS within the same time period. Analysis of significant trends in combination with land cover information show recent land change dynamics. As these changes are not solely biophysically driven, socio-economic variables representing marginality - defined as the root cause of poverty- are also considered. The most poor are primarily facing the most vulnerable and thereby less fertile soils. Moreover they are lacking access to information to eventually use existing potential. This makes the analysis of changing environmental processes and household characteristics in the interplay important to understand in order to highlight the most influencing variables. Within the new interdisciplinary analysis framework the concept of marginality includes different dimensions referring to certain livelihood characteristics such as health and education which describe a more diverse picture of poverty than the known economic perspective. Household surveys and census data from different time

  1. Can ectomycorrhizal symbiosis and belowground plant traits be used as ecological tools to mitigate erosion on degraded slopes in the ultramafic soils of New Caledonia?

    NASA Astrophysics Data System (ADS)

    Demenois, Julien; Carriconde, Fabian; Rey, Freddy; Stokes, Alexia

    2015-04-01

    New Caledonia is an archipelago in the South West Pacific located just above the Tropic of Capricorn. The main island is bisected by a continuous mountain chain whose highest peaks reach more than 1 600 m. With mean annual rainfall above 2 000 mm in the South of the main island, frequent downpours and steep slopes, its soils are prone to water erosion. Deforestation, fires and mining activity are the main drivers of water erosion. Stakes are high to mitigate the phenomenon: extraction of nickel from ultramafic substrates (one third of the whole territory) is the main economic activity; New Caledonia is considered as a biodiversity hotspot. Restoration ecology is seen as a key approach for tackling such environmental challenges. Soil microorganisms could play significant roles in biological processes such as plant nutrition and plant resistance to abiotic and biotic stresses. Microorganisms could increase soil aggregate stability and thus mitigate soil erodibility. Plant roots increase soil cohesion through exudation and decomposition processes. To date, few studies have collected data on the soil aggregate stability of steep slopes affected by erosion and, to our knowledge, interactions between ectomycorrhizas (ECM), roots and erodibility of ultramafic soils have never been considered. The objective of our study is to assess the influence of ECM symbiosis and plant root traits on the erodibility of ultramafic soils of New Caledonia and answer the following questions: 1/ What is the influence of plant root traits of vegetal communities and ECM fungal diversity on soil erodibility? 2/ What are the belowground plant traits of some mycorrhized endemic species used in ecological restoration? 3/ What is the influence of plant root traits and ECM fungal inoculation on soil erodibility? At the scale of plant communities, five types of vegetation have been chosen in the South of the main island: degraded ligno-herbaceous shrubland, ligno-herbaceous shrubland, degraded humid

  2. Can ectomycorrhizal symbiosis and belowground plant traits be used as ecological tools to mitigate erosion on degraded slopes in the ultramafic soils of New Caledonia?

    NASA Astrophysics Data System (ADS)

    Demenois, Julien; Carriconde, Fabian; Rey, Freddy; Stokes, Alexia

    2015-04-01

    New Caledonia is an archipelago in the South West Pacific located just above the Tropic of Capricorn. The main island is bisected by a continuous mountain chain whose highest peaks reach more than 1 600 m. With mean annual rainfall above 2 000 mm in the South of the main island, frequent downpours and steep slopes, its soils are prone to water erosion. Deforestation, fires and mining activity are the main drivers of water erosion. Stakes are high to mitigate the phenomenon: extraction of nickel from ultramafic substrates (one third of the whole territory) is the main economic activity; New Caledonia is considered as a biodiversity hotspot. Restoration ecology is seen as a key approach for tackling such environmental challenges. Soil microorganisms could play significant roles in biological processes such as plant nutrition and plant resistance to abiotic and biotic stresses. Microorganisms could increase soil aggregate stability and thus mitigate soil erodibility. Plant roots increase soil cohesion through exudation and decomposition processes. To date, few studies have collected data on the soil aggregate stability of steep slopes affected by erosion and, to our knowledge, interactions between ectomycorrhizas (ECM), roots and erodibility of ultramafic soils have never been considered. The objective of our study is to assess the influence of ECM symbiosis and plant root traits on the erodibility of ultramafic soils of New Caledonia and answer the following questions: 1/ What is the influence of plant root traits of vegetal communities and ECM fungal diversity on soil erodibility? 2/ What are the belowground plant traits of some mycorrhized endemic species used in ecological restoration? 3/ What is the influence of plant root traits and ECM fungal inoculation on soil erodibility? At the scale of plant communities, five types of vegetation have been chosen in the South of the main island: degraded ligno-herbaceous shrubland, ligno-herbaceous shrubland, degraded humid

  3. Deposition fluxes of PCDD/Fs in the area surrounding a steel plant in northwest Italy.

    PubMed

    Onofrio, Maurizio; Spataro, Roberta; Botta, Serena

    2014-06-01

    The paper aims at investigating the contribution of a steel plant located in a rural area in northwestern Italy (700,000 tons of steel/year) to the deposition fluxes of Polychorinated Dibenzo-p-dioxins and Polychorinated dibenzofurans (PCDD/PCDFs) at local level through the analysis of sampling data, literature data, and air dispersion model (AERMOD)output data. Total measured deposition fluxes of PCDD/PCDFs in three monitoring stations were consistent with other studies carried out in Italy in urban and suburban areas and in rural European areas; while these were lower than those measured in other European urban/suburban areas or in sites influenced by industrial sources. Furthermore, the measured fluxes were also compared with the pattern of PCDD/Fs in ambient air sampled at the same sites in a previous study. This comparison showed a similarity between air concentration and deposition patterns of the samples collected at the three monitoring stations and a clear distinction of these from the source. The study was completed with AERMOD simulations, conducted with a mass mean particle diameter of 0.5 μm, according to the particle size distribution of the samples collected at the source. AERMOD calculated deposition fluxes of two to three orders of magnitude lower than those measured in two monitoring points; while in the most distant monitoring station, the deposition fluxes were too low to be calculated by the model. The simulations confirmed that the most distant monitoring station was not subject to emissions from the steel plant. The analysis highlighted the limited influence of the source in the local PCDD/F deposition fluxes. PMID:24585258

  4. Production by Tobacco Transplastomic Plants of Recombinant Fungal and Bacterial Cell-Wall Degrading Enzymes to Be Used for Cellulosic Biomass Saccharification

    PubMed Central

    Leelavathi, Sadhu; Doria, Enrico; Reddy, Vanga Siva; Cella, Rino

    2015-01-01

    Biofuels from renewable plant biomass are gaining momentum due to climate change related to atmospheric CO2 increase. However, the production cost of enzymes required for cellulosic biomass saccharification is a major limiting step in this process. Low-cost production of large amounts of recombinant enzymes by transgenic plants was proposed as an alternative to the conventional microbial based fermentation. A number of studies have shown that chloroplast-based gene expression offers several advantages over nuclear transformation due to efficient transcription and translation systems and high copy number of the transgene. In this study, we expressed in tobacco chloroplasts microbial genes encoding five cellulases and a polygalacturonase. Leaf extracts containing the recombinant enzymes showed the ability to degrade various cell-wall components under different conditions, singly and in combinations. In addition, our group also tested a previously described thermostable xylanase in combination with a cellulase and a polygalacturonase to study the cumulative effect on the depolymerization of a complex plant substrate. Our results demonstrate the feasibility of using transplastomic tobacco leaf extracts to convert cell-wall polysaccharides into reducing sugars, fulfilling a major prerequisite of large scale availability of a variety of cell-wall degrading enzymes for biofuel industry. PMID:26137472

  5. Production by Tobacco Transplastomic Plants of Recombinant Fungal and Bacterial Cell-Wall Degrading Enzymes to Be Used for Cellulosic Biomass Saccharification.

    PubMed

    Longoni, Paolo; Leelavathi, Sadhu; Doria, Enrico; Reddy, Vanga Siva; Cella, Rino

    2015-01-01

    Biofuels from renewable plant biomass are gaining momentum due to climate change related to atmospheric CO2 increase. However, the production cost of enzymes required for cellulosic biomass saccharification is a major limiting step in this process. Low-cost production of large amounts of recombinant enzymes by transgenic plants was proposed as an alternative to the conventional microbial based fermentation. A number of studies have shown that chloroplast-based gene expression offers several advantages over nuclear transformation due to efficient transcription and translation systems and high copy number of the transgene. In this study, we expressed in tobacco chloroplasts microbial genes encoding five cellulases and a polygalacturonase. Leaf extracts containing the recombinant enzymes showed the ability to degrade various cell-wall components under different conditions, singly and in combinations. In addition, our group also tested a previously described thermostable xylanase in combination with a cellulase and a polygalacturonase to study the cumulative effect on the depolymerization of a complex plant substrate. Our results demonstrate the feasibility of using transplastomic tobacco leaf extracts to convert cell-wall polysaccharides into reducing sugars, fulfilling a major prerequisite of large scale availability of a variety of cell-wall degrading enzymes for biofuel industry. PMID:26137472

  6. Case Studies Due to Invasive Plants on the Vegetation Retardation Succession in Landslide Areas of Shimen reservoir

    NASA Astrophysics Data System (ADS)

    Huang, Wen-Cheng; Lin, Shin-Hwei

    2014-05-01

    The steep terrain and the fragile geology in Taiwan have caused large landslides in the reservoir watershed in the season with typhoons and heavy rain. Management, restoration strategies, and vegetation succession mechanism of landslide areas are distinct due to different attributes and locations of landslide areas. Aiming at 50 landslide areas in Shihmen reservoir watershed from 2004 to 2012, because of the Typhoon Aere occurred in 2004, this study clusters with the primary vegetation data and ortho image, and discusses the primary vegetation type in landslide areas. The successive management engineering in the watershed and the case data in Sule and Shaluntzu are analyzed the vegetation development and plant competition to evaluate the plant succession mechanism and the vegetation restoration results for the reference of successive design of vegetation engineering in landslide areas. The result shows that Shaluntzu area used invasive plants Rhodesgrass and Rhodesian kudzu when slope land vegetation restoration and secondary planting seedlings. Rhodesian kudzu has property of binding plant and causes for vegetation death. Currently, cutting down Rhodesian kudzu to reduce its interference is the most effective prevention and management method. Carefully choose the pre-grass species for vegetation in the have to carry out artificial vegetation restoration area, and continue to monitor the status currently. It would increase biodiversity for slope land due to select the indicator species of vegetation restoration and know successional trends of invasive plant species.

  7. Survey of Plant Drought-Resistance Promoting Bacteria from Populus euphratica Tree Living in Arid Area.

    PubMed

    Wang, Shanshan; Ouyang, Liming; Ju, Xiangyang; Zhang, Lili; Zhang, Qin; Li, Yanbin

    2014-12-01

    Two hundred and thirty-two bacterial strains were isolated from the rhizospheric soil of Populus euphratica which is the dominant tree living in extreme arid regions in northwest China. Some strains with plant growth-promoting bacteria related metabolic characteristics were able to promote drought resistance in plants after inoculation. Ten strains with the greatest effects increased the dry weight of wheat shoots from 0.5 to 34.4 %, and the surface area of the root systems from 12.56 to 212.17 % compared to the control after drought treatment whereas no obvious promoting effect was observed in normal water conditions. These 10 strains were identified to be of the genera Pseudomonas, Bacillus, Stenotrophomonas and Serratia by 16S rRNA (rrs) gene sequence alignment. Among these strains, Serratia sp. 1-9 and Pseudomonas sp. 5-23 were the two most effective strains. Both of them produced auxin and the production increased significantly when cultured under simulated drought conditions which are inferred to be the most plausible mechanism for their plant growth-promoting effect under drought stress. PMID:25320440

  8. Chemical characteristics of organic aerosols in Algiers city area: influence of a fat manufacture plant

    NASA Astrophysics Data System (ADS)

    Yassaa, Noureddine; Meklati, Brahim Youcef; Cecinato, Angelo

    Total concentrations and homologue distributions of organic fraction constituents have been determined in particulate matter emitted from different units of a fat manufacturer (i.e. oils refining and conditioning plants, and production and conditioning units of a soap industry) located in Algiers area, as well as in atmospheric aerosols. In particular n-alkanes, n-alkanoic and n-alkenoic acids, n-alkan-2-ones and polycyclic aromatic hydrocarbons (PAH) were investigated. Organic aerosol contents varied broadly among the plant units, depending upon nature of the manufactured products. The percent composition of all classes of compounds investigated in ambient atmosphere was similar to those observed indoor at industrial plant units. Organic acids, n-alkanoic as well as n-alkenoic, appeared by far the most abundant organic constituents of aerosols, both indoor and outdoor, ranging from 7.7 to 19.8 and from 12.7 to 17.1 μg m -3, respectively. The huge occurrence of acids and n-alkanes in ambient aerosols was consistent with their high levels present in oil and fat materials. Among minor components of aerosols, n-alkan-2-ones and PAH, seemed to be related to thermally induced ageing and direct combustion of raw organic material used for oil and soap production.

  9. Slash and burn versus "agronegócio". Tales of forest degradation in the maroon area of Vila Bela da SantíssimaTrindade, Mato Grosso, Brazil

    NASA Astrophysics Data System (ADS)

    Leite, José C.; Ferreira, António A. J.

    2014-05-01

    Over the last four decades, deforestation in Brazil occurred systematically in the area known as the "arcof deforestation", an extensive geographical area located in the interface of the Cerrado and the Amazon biomes. The deforestation process replaces the forest and the slash and burn agriculture systems by modern intensive agriculture systems targeted at the production of cash crops like cotton, maize or soybeans, and to graze cattle.The so called "agronegócio" system. The reduction of pristine forest areas where traditional (indigenous, maroons and riverside) population conduct slash and burn agriculture, reduces the recovery time of the abandoned fields after exhaustion by agriculture crops, reason why the return to the same spots for another cycle of slash and burn occurs before the forest recovers completely from the previous cycle. In fact, the frequency of the cycles is increasing with the expansion of farm land and the reduction of available forest. This work encompasses the reasons, causes and/or motivations of the deforestation trends in the Vila Bela da SantíssimaTrindade, near the Bolivian border of Mato Grosso in Brazil, over a time span of four decades. The arc of deforestation has passed the region in the 1980's, leaving yet a large area of pristine forest where the traditional communities kept practicing a slash and burn agriculture system. Nevertheless, due to the reduction of available area, and specially due to the exposure of traditional communities to the "western civilization culture", there is an increasing abandonment of the traditional systems and associated culture and knowledge. In this context, the traditional communities may become a deforestation/degradation factor. To prevent this situation, the GUYAGROFOR project was implemented, to value traditional knowledge, identify bottlenecks in the increase of added value to the local traditional products, and to test methodologies to maintain and if possible improve soil fertility near the

  10. Range sustainability: Assessment and reclamation of arid plant communities and training area design for mission sustainability

    SciTech Connect

    Ostler, W.K.

    1999-12-01

    Seventy percent of US Department of Defense training and testing areas is on arid and semiarid land. Testing and training activities are often more devastating to arid lands than more mesic areas and, consequently, can threaten the continuation of military testing and training operations in these areas. Current gaps exist in diagnostic capabilities to distinguish among various degrees of sustainable and nonsustainable impacts from earth-disturbing activities in desert ecosystems. Work is ongoing to develop innovative remote sensing techniques to rapidly characterize impacts of military training and testing on arid environments. The diagnostic techniques include new rapid detection methods of image collection and laser induced fluorescence imagery techniques to provide early detection of the condition of stressed plants. Innovative image processing techniques will be assessed which will provide rapid assessment of vegetation parameters used in various US Department of Defense environmental management models such as the Army Training and Testing Area Carrying Capacity. New and cost-effective techniques for revegetation of disturbed training lands will be examined at Fort Irwin--the National Training Center in the Mojave Desert of California.

  11. Numerical simulation of the thermal conditions in a sea bay water area used for water supply to nuclear power plants

    SciTech Connect

    Sokolov, A. S.

    2013-07-15

    Consideration is given to the numerical simulation of the thermal conditions in sea water areas used for both water supply to and dissipation of low-grade heat from a nuclear power plant on the shore of a sea bay.

  12. Individual species-area relationship of woody plant communities in a heterogeneous subtropical monsoon rainforest.

    PubMed

    Tsai, Cheng-Han; Lin, Yi-Ching; Wiegand, Thorsten; Nakazawa, Takefumi; Su, Sheng-Hsin; Hsieh, Chih-Hao; Ding, Tzung-Su

    2015-01-01

    The spatial structure of species richness is often characterized by the species-area relationship (SAR). However, the SAR approach rarely considers the spatial variability of individual plants that arises from species interactions and species' habitat associations. Here, we explored how the interactions of individual plants of target species influence SAR patterns at a range of neighborhood distances. We analyzed the data of 113,988 woody plants of 110 species from the Fushan Forest Dynamics Plot (25 ha), northern Taiwan, which is a subtropical rainforest heavily influenced by typhoons. We classified 34 dominant species into 3 species types (i.e., accumulator, repeller, or no effect) by testing how the individual species-area relationship (i.e., statistics describing how neighborhood species richness changes around individuals) of target species departs (i.e., positively, negatively, or with no obvious trend) from a null model that accounts for habitat association. Deviation from the null model suggests that the net effect of species' interactions increases (accumulate) or decreases (repel) neighborhood species richness. We found that (i) accumulators were dominant at small interaction distances (<10-30 m); (ii) the detection of accumulator species was lower at large interaction distances (>30 m); (iii) repellers were rarely detected; and (iv) large-sized and abundant species tended to be accumulators. The findings suggest that positive species interactions have the potential to accumulate neighborhood species richness, particularly through size- and density-dependent mechanisms. We hypothesized that the frequently disturbed environment of this subtropical rainforest (e.g., typhoon-driven natural disturbances such as landslides, soil erosion, flooding, and windthrow) might create the spatial heterogeneity of species richness and promote positive species interactions. PMID:25884405

  13. Individual Species-Area Relationship of Woody Plant Communities in a Heterogeneous Subtropical Monsoon Rainforest

    PubMed Central

    Tsai, Cheng-Han; Lin, Yi-Ching; Wiegand, Thorsten; Nakazawa, Takefumi; Su, Sheng-Hsin

    2015-01-01

    The spatial structure of species richness is often characterized by the species-area relationship (SAR). However, the SAR approach rarely considers the spatial variability of individual plants that arises from species interactions and species’ habitat associations. Here, we explored how the interactions of individual plants of target species influence SAR patterns at a range of neighborhood distances. We analyzed the data of 113,988 woody plants of 110 species from the Fushan Forest Dynamics Plot (25 ha), northern Taiwan, which is a subtropical rainforest heavily influenced by typhoons. We classified 34 dominant species into 3 species types (i.e., accumulator, repeller, or no effect) by testing how the individual species-area relationship (i.e., statistics describing how neighborhood species richness changes around individuals) of target species departs (i.e., positively, negatively, or with no obvious trend) from a null model that accounts for habitat association. Deviation from the null model suggests that the net effect of species’ interactions increases (accumulate) or decreases (repel) neighborhood species richness. We found that (i) accumulators were dominant at small interaction distances (<10–30 m); (ii) the detection of accumulator species was lower at large interaction distances (>30 m); (iii) repellers were rarely detected; and (iv) large-sized and abundant species tended to be accumulators. The findings suggest that positive species interactions have the potential to accumulate neighborhood species richness, particularly through size- and density-dependent mechanisms. We hypothesized that the frequently disturbed environment of this subtropical rainforest (e.g., typhoon-driven natural disturbances such as landslides, soil erosion, flooding, and windthrow) might create the spatial heterogeneity of species richness and promote positive species interactions. PMID:25884405

  14. Remedial investigation concept plan for the groundwater operable units at the chemical plant area and the ordnance works area, Weldon Spring, Missouri

    SciTech Connect

    1999-07-15

    The U.S. Department of Energy (DOE) and the U.S. Department of the Army (DA) are conducting cleanup activities at two properties--the DOE chemical plant area and the DA ordnance works area (the latter includes the training area)--located in the Weldon Spring area in St. Charles County, Missouri. These areas are on the National Priorities List (NPL), and cleanup activities at both areas are conducted in accordance with the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA), as amended. DOE and DA are conducting a joint remedial investigation (RI) and baseline risk assessment (BRA) as part of the remedial investigation/feasibility study (RI/FS) for the groundwater operable units for the two areas. This joint effort will optimize further data collection and interpretation efforts and facilitate overall remedial decision making since the aquifer of concern is common to both areas. A Work Plan issued jointly in 1995 by DOE and the DA discusses the results of investigations completed at the time of preparation of the report. The investigations were necessary to provide an understanding of the groundwater system beneath the chemical plant area and the ordnance works area. The Work Plan also identifies additional data requirements for verification of the evaluation presented.

  15. Strongyloides infections of humans and great apes in Dzanga-Sangha Protected Areas, Central African Republic and in degraded forest fragments in Bulindi, Uganda.

    PubMed

    Hasegawa, Hideo; Kalousova, Barbora; McLennan, Matthew R; Modry, David; Profousova-Psenkova, Ilona; Shutt-Phillips, Kathryn A; Todd, Angelique; Huffman, Michael A; Petrzelkova, Klara J

    2016-10-01

    DNA sequence analysis was carried out on Strongyloides spp. larvae obtained from fecal samples of local humans, a wild western lowland gorilla (Gorilla gorilla gorilla) and a central chimpanzee (Pan troglodytes troglodytes) inhabiting Dzanga-Sangha Protected Areas (DSPA), Central African Republic, and eastern chimpanzees (Pan troglodytes schweinfurthii) living in degraded forest fragments on farmland in Bulindi, Uganda. From humans, both Strongyloides fuelleborni and Strongyloides stercoralis were recorded, though the former was predominant. Only S. fuelleborni was present in the great apes in both areas. Phylogenetic analysis of partial mtDNA cytochrome c oxidase subunit 1 gene (Cox1) and comparison of 18S rDNA hyper variable region IV (HVR-IV) sequences implied that in DSPA S. fuelleborni populations in humans differ from those in the nonhuman great apes. PMID:27180094

  16. PEM fuel cell degradation

    SciTech Connect

    Borup, Rodney L; Mukundan, Rangachary

    2010-01-01

    The durability of PEM fuel cells is a major barrier to the commercialization of these systems for stationary and transportation power applications. While significant progress has been made in understanding degradation mechanisms and improving materials, further improvements in durability are required to meet commercialization targets. Catalyst and electrode durability remains a primary degradation mode, with much work reported on understanding how the catalyst and electrode structure degrades. Accelerated Stress Tests (ASTs) are used to rapidly evaluate component degradation, however the results are sometimes easy, and other times difficult to correlate. Tests that were developed to accelerate degradation of single components are shown to also affect other component's degradation modes. Non-ideal examples of this include ASTs examining catalyst degradation performances losses due to catalyst degradation do not always well correlate with catalyst surface area and also lead to losses in mass transport.

  17. Draft Genome Sequence of Arthrobacter sp. Strain SPG23, a Hydrocarbon-Degrading and Plant Growth-Promoting Soil Bacterium

    PubMed Central

    Gkorezis, Panagiotis; Bottos, Eric M.; Van Hamme, Jonathan D.; Thijs, Sofie; Rineau, Francois; Balseiro-Romero, Maria; Weyens, Nele

    2015-01-01

    We report here the 4.7-Mb draft genome of Arthrobacter sp. SPG23, a hydrocarbonoclastic Gram-positive bacterium belonging to the Actinobacteria, isolated from diesel-contaminated soil at the Ford Motor Company site in Genk, Belgium. Strain SPG23 is a potent plant growth promoter useful for diesel fuel remediation applications based on plant-bacterium associations. PMID:26701084

  18. Proteomic Investigation of Rhizoctonia solani AG 4 Identifies Secretome and Mycelial Proteins with Roles in Plant Cell Wall Degradation and Virulence.

    PubMed

    Lakshman, Dilip K; Roberts, Daniel P; Garrett, Wesley M; Natarajan, Savithiry S; Darwish, Omar; Alkharouf, Nadim; Pain, Arnab; Khan, Farooq; Jambhulkar, Prashant P; Mitra, Amitava

    2016-04-20

    Rhizoctonia solani AG 4 is a soilborne necrotrophic fungal plant pathogen that causes economically important diseases on agronomic crops worldwide. This study used a proteomics approach to characterize both intracellular proteins and the secretome of R. solani AG 4 isolate Rs23A under several growth conditions, the secretome being highly important in pathogenesis. From over 500 total secretome and soluble intracellular protein spots from 2-D gels, 457 protein spots were analyzed and 318 proteins positively matched with fungal proteins of known function by comparison with available R. solani genome databases specific for anastomosis groups 1-IA, 1-IB, and 3. These proteins were categorized to possible cellular locations and functional groups and for some proteins their putative roles in plant cell wall degradation and virulence. The majority of the secreted proteins were grouped to extracellular regions and contain hydrolase activity. PMID:27019116

  19. An aerial radiological survey of the Paducah Gaseous Diffusion Plant and surrounding area, Paducah, Kentucky

    SciTech Connect

    Not Available

    1992-11-01

    An aerial radiological survey of the Paducah Gaseous Diffusion Plant (PGDP) and surrounding area in Paducah, Kentucky, was conducted during May 15--25, 1990. The purpose of the survey was to measure and document the terrestrial radiological environment at the PGDP and surrounding area for use in effective environmental management and emergency response planning. The aerial survey was flown at an altitude of 61 meters (200 feet) along a series of parallel lines 107 meters (350 feet) apart. The survey encompassed an area of 62 square kilometers (24 square miles), bordered on the north by the Ohio River. The results of the aerial survey are reported as inferred exposure rates at 1 meter above ground level in the form of a gamma radiation contour map. Typical background exposure rates were found to vary from 5 to 12 microroentgens per hour ([mu]R/h). Protactinium-234m, a radioisotope indicative of uranium-238, was detected at several facilities at the PGDR. In support of the aerial survey, ground-based exposure rate and soil sample measurements were obtained at several sites within the survey perimeter. The results of the aerial and ground-based measurements were found to agree within [plus minus]15%.

  20. Area Expansivity Moduli of Regenerating Plant Protoplast Cell Walls Exposed to Shear Flows

    NASA Astrophysics Data System (ADS)

    Fujimura, Yuu; Iino, Masaaki; Watanabe, Ugai

    2005-05-01

    To control the elasticity of the plant cell wall, protoplasts isolated from cultured Catharanthus roseus cells were regenerated in shear flows of 115 s-1 (high shear) and 19.2 s-1 (low shear, as a control). The surface area expansivity modulus and the surface breaking strength of these regenerating protoplasts were measured by a micropipette aspiration technique. Cell wall synthesis was also measured using a cell wall-specific fluorescent dye. High shear exposure for 3 h doubled both the surface area modulus and breaking strength observed under low shear, significantly decreased cell wall synthesis, and roughly quadrupled the moduli of the cell wall. Based on the cell wall synthesis data, we estimated the three-dimensional modulus of the cell wall to be 4.1± 1.2 GPa for the high shear, and 0.35± 0.2 GPa for the low shear condition, using the surface area expansivity modulus divided by the cell wall thickness, which is identical with the Young’s modulus divided by 2(1-σ), where σ is Poisson's ratio. We concluded that high shear exposure considerably strengthens the newly synthesized cell wall.

  1. Seed isotopic analysis as a tool to understand ecological processes influencing plant development and physiology: the case study of Quercus rotundifolia Lam. in a desertification gradient in Mediterranean areas

    NASA Astrophysics Data System (ADS)

    Oliveira, Tatiana; Silva, Anabela; Rodrigues, Carla; Antunes Antunes, Cristina; Pinho, Pedro; Ramos, Alzira; João Pereira, Maria; Branquinho, Cristina; Máguas, Cristina

    2014-05-01

    climate variations information of several months). The results indicate a clear relationship between seed morphology and both temperature and precipitation as well a significant correlation between δ15N and precipitation, which indicate an influence of major climatic variables on seed carbon allocation and nitrogen uptake. These results may also contribute to future mitigation programmes in degraded areas where there are systematic problems with plant regeneration and ultimately to learn about the application of stable isotopes approaches in dryland ecosystems.

  2. Was the Eocene Arctic a Source Area for Exotic Plants and Mammals? (Invited)

    NASA Astrophysics Data System (ADS)

    Eberle, J. J.; Harrington, G. J.; Fricke, H. C.; Humphrey, J.; Hackett, L.; Newbrey, M.; Hutchison, J. H.

    2010-12-01

    not found in correlative strata of either mid-latitude North America or Europe. Either the Arctic region is a source of some evolutionary novelty, or alternatively it recruited plants directly from Asia. In sum, although the Arctic was undoubtedly en route for terrestrial plants and animals dispersing across Holarctic continents during parts of the Paleogene, evidence from both the Eocene plant and vertebrate communities on Ellesmere Island indicates the Arctic must also be evaluated as a potential source area for exotic taxa.

  3. Evaluation of the anaerobic degradation of black liquor from a Kraft pulp plant with addition of organic co-substrates.

    PubMed

    Buzzini, A P; Sakamoto, I K; Varesche, M B; Pires, E C

    2009-01-01

    The purpose of this study was to assess the anaerobic degradation of black liquor with and without additional carbon sources. Batch experiments were conducted using black liquor, from an integrated pulp and paper mill adding ethanol, methanol and nutrients. The PCR/DGGE technique was used to characterize the structure of the microbial community. The addition of extra sources of carbon did not significantly influence the degradation of black liquor under the conditions evaluated and the microbial community was similar in all experiments. It was observed an increase in some members of the archaeal in reactors that had the best efficiencies for removal of black liquor (around 7.5%). Either ethanol or methanol can be used as co-substrates because the produce the same quantitative and qualitative effect. PMID:19587424

  4. Elemental characterization of wild edible plants from countryside and urban areas.

    PubMed

    Renna, Massimiliano; Cocozza, Claudio; Gonnella, Maria; Abdelrahman, Hamada; Santamaria, Pietro

    2015-06-15

    Thirteen elements (Na, K, Ca, Mg, Fe, Mn, Cu, Zn, Cr, Co, Cd, Ni and Pb) in 11 different wild edible plants (WEP) (Amaranthus retroflexus, Foeniculum vulgare, Cichorium intybus, Glebionis coronaria, Sonchus spp., Borago officinalis, Diplotaxis tenuifolia, Sinapis arvensis, Papaver rhoeas, Plantago lagopus and Portulaca oleracea) collected from countryside and urban areas of Bari (Italy) were determined. B.officinalis and P.rhoeas could represent good nutritional sources of Mn and Fe, respectively, as well as A.retroflexus and S.arvensis for Ca. High intake of Pb and Cd could come from P.lagopus and A.retroflexus (1.40 and 0.13 mg kg(-1) FW, respectively). WEP may give a substantial contribution to the elements intake for consumers, but in some cases they may supply high level of elements potentially toxic for human health. Anyway, both ANOVA and PCA analyses have highlighted the low influence of the harvesting site on the elements content. PMID:25660854

  5. Geographic Profiling to Assess the Risk of Rare Plant Poaching in Natural Areas

    NASA Astrophysics Data System (ADS)

    Young, John A.; van Manen, Frank T.; Thatcher, Cindy A.

    2011-09-01

    We demonstrate the use of an expert-assisted spatial model to examine geographic factors influencing the poaching risk of a rare plant (American ginseng, Panax quinquefolius L.) in Shenandoah National Park, Virginia, USA. Following principles of the analytic hierarchy process (AHP), we identified a hierarchy of 11 geographic factors deemed important to poaching risk and requested law enforcement personnel of the National Park Service to rank those factors in a series of pair-wise comparisons. We used those comparisons to determine statistical weightings of each factor and combined them into a spatial model predicting poaching risk. We tested the model using 69 locations of previous poaching incidents recorded by law enforcement personnel. These locations occurred more frequently in areas predicted by the model to have a higher risk of poaching than random locations. The results of our study can be used to evaluate resource protection strategies and to target law enforcement activities.

  6. Decontamination of Savannah River Plant H-Area hot-canyon crane

    SciTech Connect

    Rankin, W N; Sims, J R

    1985-01-01

    Decontamination techniques applicable to the remotely operated bridge cranes in canyon buildings at the Savannah River Plant (SRP) were identified and were evaluated in laboratory-scale tests. High pressure Freon blasting was found to be the most attractive process available for this application. Strippable coatings were selected as an alternative technique in selected applications. The ability of high pressure Freon blasting plus two strippable coatings (Quadcoat 100 and Alara 1146) to remove the type of contamination expected on SRP cranes was demonstrated in laboratory-scale tests. Quadrex HPS was given a contract to decontaminate the H-Area hot canyon crane. Decontamination operations were successfully carried out within the specified time-frame window. The radiation level goals specified by SRP were met and decontamination was accomplished with 85% less personnel exposure than estimated by SRP before the job started. This reduction is attributed to the increased efficiency of the new decontamination techniques used. 6 refs., 1 tab.

  7. Pepino (Solanum muricatum) planting increased diversity and abundance of bacterial communities in karst area.

    PubMed

    Hu, Jinxiang; Yang, Hui; Long, Xiaohua; Liu, Zhaopu; Rengel, Zed

    2016-01-01

    Soil nutrients and microbial communities are the two key factors in revegetation of barren environments. Ecological stoichiometry plays an important role in ecosystem function and limitation, but the relationships between above- and belowground stoichiometry and the bacterial communities in a typical karst region are poorly understood. We used pepino (Solanum muricatum) to examine the stoichiometric traits between soil and foliage, and determine diversity and abundance of bacteria in the karst soil. The soil had a relatively high pH, low fertility, and coarse texture. Foliar N:P ratio and the correlations with soil nitrogen and phosphorus suggested nitrogen limitation. The planting of pepino increased soil urease activity and decreased catalase activity. Higher diversity of bacteria was determined in the pepino rhizosphere than bulk soil using a next-generation, Illumina-based sequencing approach. Proteobacteria, Acidobacteria, Actinobacteria and Bacteroidetes were the dominant phyla in all samples, accounting for more than 80% of the reads. On a genus level, all 625 detected genera were found in all rhizosphere and bulk soils, and 63 genera showed significant differences among samples. Higher Shannon and Chao 1 indices in the rhizosphere than bulk soil indicated that planting of pepino increased diversity and abundance of bacterial communities in karst area. PMID:26902649

  8. Pepino (Solanum muricatum) planting increased diversity and abundance of bacterial communities in karst area

    PubMed Central

    Hu, Jinxiang; Yang, Hui; Long, Xiaohua; Liu, Zhaopu; Rengel, Zed

    2016-01-01

    Soil nutrients and microbial communities are the two key factors in revegetation of barren environments. Ecological stoichiometry plays an important role in ecosystem function and limitation, but the relationships between above- and belowground stoichiometry and the bacterial communities in a typical karst region are poorly understood. We used pepino (Solanum muricatum) to examine the stoichiometric traits between soil and foliage, and determine diversity and abundance of bacteria in the karst soil. The soil had a relatively high pH, low fertility, and coarse texture. Foliar N:P ratio and the correlations with soil nitrogen and phosphorus suggested nitrogen limitation. The planting of pepino increased soil urease activity and decreased catalase activity. Higher diversity of bacteria was determined in the pepino rhizosphere than bulk soil using a next-generation, Illumina-based sequencing approach. Proteobacteria, Acidobacteria, Actinobacteria and Bacteroidetes were the dominant phyla in all samples, accounting for more than 80% of the reads. On a genus level, all 625 detected genera were found in all rhizosphere and bulk soils, and 63 genera showed significant differences among samples. Higher Shannon and Chao 1 indices in the rhizosphere than bulk soil indicated that planting of pepino increased diversity and abundance of bacterial communities in karst area. PMID:26902649

  9. Cancer incidence patterns in the Denver metropolitan area in relation to the Rocky Flats plant.

    PubMed

    Crump, K S; Ng, T H; Cuddihy, R G

    1987-07-01

    This study considered whether geographic patterns of cancer suggest any relation with Rocky Flats, a facility located near Denver, Colorado that processes plutonium components for nuclear weapons. The study was based upon cancer incidence data for the years 1969 to 1971 and 1979 to 1981, and census tract data for 1970 and 1980. Data for 1979 to 1981 showed little association with Rocky Flats, even though considerations of the timing of releases of radioactivity from the plant and cancer latency indicate that data from this period should be more indicative of an effect of Rocky Flats than data from the earlier period. The explanatory variable found to be most closely associated with cancer incidence was an urban factor measured by distance from the Colorado State Capitol located in downtown Denver. Indications of correlations of cancer incidence with proximity to Rocky Flats largely disappeared for both time periods when analyses were stratified by this urban factor. This negative finding was not surprising because persons living in the vicinity of the plant have been shown to have no more plutonium in their tissues than persons living in other areas of Colorado. PMID:3591777

  10. What constitutes a population for the plant parasitic nematode Globodera pallida in its native area (Peru)?

    PubMed

    Picard, Damien; Plantard, Olivier

    2006-01-01

    Although numerous species are distributed in discrete populations easily recognised by geographical barriers, continuous populations are a common feature of plants or marine organisms. This is particularly true for soil organisms as their habitat is continuous and their range cannot easily be assessed as they are buried below ground. In the case of organisms for which standard methods such as Capture/Mark/Recapture cannot be used, population genetics provide a straightforward approach to delimitate populations. In this study, we have pursued this topic with a soil-dwelling nematode (Globodera pallida), which parasitises potato roots and is indigenous to South America. Potential barriers to gene flow were identified using the analysis of the F(ST)/(1-F(ST)) ratio against geographical distance and spatial autocorrelation combined with model-based clustering algorithm. Inside regions, neither genetic differentiation nor isolation by distance (IBD) occur among fields less than 50 km distant. We hypothesise that the large amount of gene flow revealed by the absence of genetic structure of this organism could be due to large passive dispersion inside an agronomic area where G. pallida has a continuous distribution and is found at high density. The first evidence of genetic differentiation appeared when a field was separated from others by an area free of farms (where G. pallida is absent or rare). Among regions, a high genetic structure coupled with an IBD pattern occurs as the consequences of the limitations of passive dispersal across deep valleys or high mountains. To our knowledge, this is the first study identifying the spatial limit of a population for a plant nematode parasite. PMID:16239004

  11. Retrieval of leaf area index in different plant species using thermal hyperspectral data

    NASA Astrophysics Data System (ADS)

    Neinavaz, Elnaz; Skidmore, Andrew K.; Darvishzadeh, Roshanak; Groen, Thomas A.

    2016-09-01

    Leaf area index (LAI) is an important variable of terrestrial ecosystems because it is strongly correlated with many ecosystem processes (e.g., water balance and evapotranspiration) and directly related to the plant energy balance and gas exchanges. Although LAI has been accurately predicted using visible and short-wave infrared hyperspectral data (0.3-2.5 μm), LAI estimation using thermal infrared (TIR, 8-14 μm) measurements has not yet been addressed. The novel approach of this study is to evaluate the retrieval of LAI using TIR hyperspectral data. The leaf area indices were destructively acquired for four plant species: Azalea japonica, Buxussempervirens, Euonymus japonicus, and Ficus benjamina. Canopy emissivity spectral measurements were obtained under controlled laboratory conditions using a MIDAC (M4401-F) spectrometer. The LAI retrieval was assessed using a partial least squares regression (PLSR), artificial neural networks (ANNs), and narrow band indices calculated from all possible combinations of waveband pairs for three vegetation indices including simple difference, simple ratio, and normalized difference. ANNs retrieved LAI more accurately than PLSR and vegetation indices (0.67 < R2 < 0.95 versus 11.54% < RMSEcv < 31.23%). The accuracy of LAI retrieval did not differ significantly between the vegetation indices. The results revealed that wavebands from the 8-12 μm region contain relevant information for LAI estimation, irrespective of the chosen vegetation index. Moreover, they demonstrated that LAI may be successfully predicted from TIR hyperspectral data, even for higher values of LAI (LAI ⩾ 5.5). The study showed the significance of using PLSR and ANNs as multivariate methods compared to the univariate technique (e.g., narrow band vegetation indices) when hyperspectral thermal data is utilized. We thus demonstrated for the first time the potential of hyperspectral thermal data to accurately retrieve LAI.

  12. Multi range spectral feature fitting for hyperspectral imagery in extracting oilseed rape planting area

    NASA Astrophysics Data System (ADS)

    Pan, Zhuokun; Huang, Jingfeng; Wang, Fumin

    2013-12-01

    Spectral feature fitting (SFF) is a commonly used strategy for hyperspectral imagery analysis to discriminate ground targets. Compared to other image analysis techniques, SFF does not secure higher accuracy in extracting image information in all circumstances. Multi range spectral feature fitting (MRSFF) from ENVI software allows user to focus on those interesting spectral features to yield better performance. Thus spectral wavelength ranges and their corresponding weights must be determined. The purpose of this article is to demonstrate the performance of MRSFF in oilseed rape planting area extraction. A practical method for defining the weighted values, the variance coefficient weight method, was proposed to set up criterion. Oilseed rape field canopy spectra from the whole growth stage were collected prior to investigating its phenological varieties; oilseed rape endmember spectra were extracted from the Hyperion image as identifying samples to be used in analyzing the oilseed rape field. Wavelength range divisions were determined by the difference between field-measured spectra and image spectra, and image spectral variance coefficient weights for each wavelength range were calculated corresponding to field-measured spectra from the closest date. By using MRSFF, wavelength ranges were classified to characterize the target's spectral features without compromising spectral profile's entirety. The analysis was substantially successful in extracting oilseed rape planting areas (RMSE ≤ 0.06), and the RMSE histogram indicated a superior result compared to a conventional SFF. Accuracy assessment was based on the mapping result compared with spectral angle mapping (SAM) and the normalized difference vegetation index (NDVI). The MRSFF yielded a robust, convincible result and, therefore, may further the use of hyperspectral imagery in precision agriculture.

  13. Safety analysis -- 200 Area Savannah River Plant, F-Canyon Operations. Supplement 4

    SciTech Connect

    Beary, M.M.; Collier, C.D.; Fairobent, L.A.; Graham, R.F.; Mason, C.L.; McDuffee, W.T.; Owen, T.L.; Walker, D.H.

    1986-02-01

    The F-Canyon facility is located in the 200 Separations Area and uses the Purex process to recover plutonium from reactor-irradiated uranium. The irradiated uranium is normally in the form of solid or hollow cylinders called slugs. These slugs are encased in aluminum cladding and are sent to the F-Canyon from the Savannah River Plant (SRP) reactor areas or from the Receiving Basin for Offsite Fuels (RBOF). This Safety Analysis Report (SAR) documents an analysis of the F-Canyon operations and is an update to a section of a previous SAR. The previous SAR documented an analysis of the entire 200 Separations Area operations. This SAR documents an analysis of the F-Canyon and is one of a series of documents for the Separations Area as specified in the Savannah River Implementation Plans. A substantial amount of the information supporting the conclusions of this SAR is found in the Systems Analysis. Some F-Canyon equipment has been updated during the time between the Systems Analysis and this SAR and a complete description of this equipment is included in this report. The primary purpose of the analysis was to demonstrate that the F-Canyon can be operated without undue risk to onsite or offsite populations and to the environment. In this report, risk is defined as the expected frequency of an accident, multiplied by the resulting radiological consequence in person-rem. The units of risk for radiological dose are person-rem/year. Maximum individual exposure values have also been calculated and reported.

  14. Non-Traditional Security Threats in the Border Areas: Terrorism, Piracy, Environmental Degradation in Southeast Asian Maritime Domain

    NASA Astrophysics Data System (ADS)

    Dabova, E. L.

    2013-11-01

    with other subsystems like South East Asia may have different approaches to global governance, international constitutional order, or particular cases such as the measure of infringement of human rights when targeting individuals suspected of terrorist links. Yet international law remains the key part of the Asian and global security regime. The hypothesis of this study is that the "void of governance" regime in territorial and international waters provides lucrative environment for developing terrorism, piracy, environmental degradation, and other criminal activities that pose untraditional threats to the regional security. This "void of governance" regime can be caused by either, or both, de jure or de facto insufficient control over particular marine territories.

  15. 2011 Annual Wastewater Reuse Report for the Idaho National Laboratory Site’s Central Facilities Area Sewage Treatment Plant

    SciTech Connect

    Michael G. Lewis

    2012-02-01

    This report describes conditions, as required by the state of Idaho Wastewater Reuse Permit (LA-000141-03), for the wastewater land application site at Idaho National Laboratory Site's Central Facilities Area Sewage Treatment Plant from November 1, 2010, through October 31, 2011. The report contains the following information: (1) Site description; (2) Facility and system description; (3) Permit required monitoring data and loading rates; (4) Status of special compliance conditions and activities; and (5) Discussion of the facility's environmental impacts. During the 2011 permit year, approximately 1.22 million gallons of treated wastewater was land-applied to the irrigation area at Central Facilities Area Sewage Treatment plant.

  16. 2012 Annual Wastewater Reuse Report for the Idaho National Laboratory Site's Central facilities Area Sewage Treatment Plant

    SciTech Connect

    Mike Lewis

    2013-02-01

    This report describes conditions, as required by the state of Idaho Wastewater Reuse Permit (#LA-000141-03), for the wastewater land application site at Idaho National Laboratory Site’s Central Facilities Area Sewage Treatment Plant from November 1, 2011, through October 31, 2012. The report contains the following information: • Site description • Facility and system description • Permit required monitoring data and loading rates • Status of compliance conditions and activities • Discussion of the facility’s environmental impacts. During the 2012 permit year, no wastewater was land-applied to the irrigation area of the Central Facilities Area Sewage Treatment Plant.

  17. 2010 Annual Wastewater Reuse Report for the Idaho National Laboratory Site's Central Facilities Area Sewage Treatment Plant

    SciTech Connect

    Mike lewis

    2011-02-01

    This report describes conditions, as required by the state of Idaho Wastewater Reuse Permit (#LA-000141-03), for the wastewater land application site at Idaho National Laboratory Site’s Central Facilities Area Sewage Treatment Plant from November 1, 2009, through October 31, 2010. The report contains the following information: • Site description • Facility and system description • Permit required monitoring data and loading rates • Status of special compliance conditions • Discussion of the facility’s environmental impacts. During the 2010 permit year, approximately 2.2 million gallons of treated wastewater was land-applied to the irrigation area at Central Facilities Area Sewage Treatment plant.

  18. Draft Genome Sequence of Bacillus licheniformis Strain GB2, a Hydrocarbon-Degrading and Plant Growth-Promoting Soil Bacterium

    PubMed Central

    Gkorezis, Panagiotis; Van Hamme, Jonathan; Bottos, Eric; Thijs, Sofie; Balseiro-Romero, Maria; Monterroso, Carmela; Kidd, Petra Suzan; Rineau, Francois; Weyens, Nele; Sillen, Wouter

    2016-01-01

    We report the 4.39 Mb draft genome of Bacillus licheniformis GB2, a hydrocarbonoclastic Gram-positive bacterium of the family Bacillaceae, isolated from diesel-contaminated soil at the Ford Motor Company site in Genk, Belgium. Strain GB2 is an effective plant-growth promoter useful for diesel fuel remediation applications based on plant-bacterium associations. PMID:27340073

  19. Draft Genome Sequence of Bacillus licheniformis Strain GB2, a Hydrocarbon-Degrading and Plant Growth-Promoting Soil Bacterium.

    PubMed

    Gkorezis, Panagiotis; Van Hamme, Jonathan; Bottos, Eric; Thijs, Sofie; Balseiro-Romero, Maria; Monterroso, Carmela; Kidd, Petra Suzan; Rineau, Francois; Weyens, Nele; Sillen, Wouter; Vangronsveld, Jaco

    2016-01-01

    We report the 4.39 Mb draft genome of Bacillus licheniformis GB2, a hydrocarbonoclastic Gram-positive bacterium of the family Bacillaceae, isolated from diesel-contaminated soil at the Ford Motor Company site in Genk, Belgium. Strain GB2 is an effective plant-growth promoter useful for diesel fuel remediation applications based on plant-bacterium associations. PMID:27340073

  20. Phytoplasma effector SAP54 hijacks plant reproduction by degrading MADS-box proteins and promotes insect colonization in a RAD23-dependent manner.

    PubMed

    MacLean, Allyson M; Orlovskis, Zigmunds; Kowitwanich, Krissana; Zdziarska, Anna M; Angenent, Gerco C; Immink, Richard G H; Hogenhout, Saskia A

    2014-04-01

    Pathogens that rely upon multiple hosts to complete their life cycles often modify behavior and development of these hosts to coerce them into improving pathogen fitness. However, few studies describe mechanisms underlying host coercion. In this study, we elucidate the mechanism by which an insect-transmitted pathogen of plants alters floral development to convert flowers into vegetative tissues. We find that phytoplasma produce a novel effector protein (SAP54) that interacts with members of the MADS-domain transcription factor (MTF) family, including key regulators SEPALLATA3 and APETALA1, that occupy central positions in the regulation of floral development. SAP54 mediates degradation of MTFs by interacting with proteins of the RADIATION SENSITIVE23 (RAD23) family, eukaryotic proteins that shuttle substrates to the proteasome. Arabidopsis rad23 mutants do not show conversion of flowers into leaf-like tissues in the presence of SAP54 and during phytoplasma infection, emphasizing the importance of RAD23 to the activity of SAP54. Remarkably, plants with SAP54-induced leaf-like flowers are more attractive for colonization by phytoplasma leafhopper vectors and this colonization preference is dependent on RAD23. An effector that targets and suppresses flowering while simultaneously promoting insect herbivore colonization is unprecedented. Moreover, RAD23 proteins have, to our knowledge, no known roles in flower development, nor plant defence mechanisms against insects. Thus SAP54 generates a short circuit between two key pathways of the host to alter development, resulting in sterile plants, and promotes attractiveness of these plants to leafhopper vectors helping the obligate phytoplasmas reproduce and propagate (zombie plants). PMID:24714165

  1. Phytoplasma Effector SAP54 Hijacks Plant Reproduction by Degrading MADS-box Proteins and Promotes Insect Colonization in a RAD23-Dependent Manner

    PubMed Central

    MacLean, Allyson M.; Orlovskis, Zigmunds; Kowitwanich, Krissana; Zdziarska, Anna M.; Angenent, Gerco C.; Immink, Richard G. H.; Hogenhout, Saskia A.

    2014-01-01

    Pathogens that rely upon multiple hosts to complete their life cycles often modify behavior and development of these hosts to coerce them into improving pathogen fitness. However, few studies describe mechanisms underlying host coercion. In this study, we elucidate the mechanism by which an insect-transmitted pathogen of plants alters floral development to convert flowers into vegetative tissues. We find that phytoplasma produce a novel effector protein (SAP54) that interacts with members of the MADS-domain transcription factor (MTF) family, including key regulators SEPALLATA3 and APETALA1, that occupy central positions in the regulation of floral development. SAP54 mediates degradation of MTFs by interacting with proteins of the RADIATION SENSITIVE23 (RAD23) family, eukaryotic proteins that shuttle substrates to the proteasome. Arabidopsis rad23 mutants do not show conversion of flowers into leaf-like tissues in the presence of SAP54 and during phytoplasma infection, emphasizing the importance of RAD23 to the activity of SAP54. Remarkably, plants with SAP54-induced leaf-like flowers are more attractive for colonization by phytoplasma leafhopper vectors and this colonization preference is dependent on RAD23. An effector that targets and suppresses flowering while simultaneously promoting insect herbivore colonization is unprecedented. Moreover, RAD23 proteins have, to our knowledge, no known roles in flower development, nor plant defence mechanisms against insects. Thus SAP54 generates a short circuit between two key pathways of the host to alter development, resulting in sterile plants, and promotes attractiveness of these plants to leafhopper vectors helping the obligate phytoplasmas reproduce and propagate (zombie plants). PMID:24714165

  2. Large-area experiment on uptake of metals by twelve plants growing in soils contaminated with multiple metals.

    PubMed

    Lai, Hung-Yu; Juang, Kai-Wei; Chen, Zueng-Sang

    2010-01-01

    A site in central Taiwan with an area of 1.3 ha and contaminated with Cr, Cu, Ni, and Zn was selected to examine the feasibility of phytoextraction. Based on the results of a preexperiment at this site, a total of approximately 20,000 plants of 12 species were selected from plants of 33 tested species to be used in a large-area phytoextraction experiment at this site. A comparison with the initial metal concentration of 12 plant species before planting demonstrated that most species accumulated significant amounts of Cr, Cu, Ni, and Zn in their shoots after growing in this contaminated site for 31 d. Among the 12 plant species, the following accumulated higher concentrations of metals in their shoots; Garden canna and Garden verbena (45-60 mg Cr kg(-1)), Chinese ixora and Kalanchoe (30 mg Cu kg(-1)), Rainbow pink and Sunflower (30 mg Ni kg(-1)), French marigold and Sunflower (300-470 mg Zn kg(-1)). The roots of the plants of most of the 12 plant species can accumulate higher concentrations of metals than the shoots and extending the growth period promotes accumulation in the shoots. Large-area experiments demonstrated that phytoextraction is a feasible method to enable metal-contaminated soil in central Taiwan to be reused. PMID:21166348

  3. Bioremediation of coastal areas 5 years after the Nakhodka oil spill in the Sea of Japan: isolation and characterization of hydrocarbon-degrading bacteria.

    PubMed

    Chaerun, S Khodijah; Tazaki, Kazue; Asada, Ryuji; Kogure, Kazuhiro

    2004-09-01

    Five years after the 1997 Nakhodka oil spill in the Sea of Japan, seven bacterial strains capable of utilizing the heavy oil spilled from the Nakhodka Russian oil tanker were isolated from three coastal areas (namely Katano Seashore of Fukui Prefecture, Osawa and Atake seashores of Ishikawa Prefecture) and the Nakhodka Russian oil tanker after a 5-year bioremediation process. All bacterial strains isolated could utilize long-chain-length alkanes efficiently, but not aromatic, and all of them were able to grow well on heavy oil. Using 16S rDNA sequencing, most of the strains were affiliated to Pseudomonas aeruginosa. Comparing between the year 1997 (at the beginning of bioremediation process) and the year 2001 (after 5 years of bioremediation), there was no significant change in morphology and size of hydrocarbon-degrading bacteria during the 5-year bioremediation. Scanning and transmission electron microscopic observations revealed that a large number of hydrocarbon-degrading bacteria still existed in the sites consisting of a variety of morphological forms of bacteria, such as coccus (Streptococcus and Staphylococcus) and bacillus (Streptobacillus). On the application of bioremediation processes on the laboratory-scale, laboratory microcosm experiments (containing seawater, beach sand, and heavy oil) under aerobic condition by two different treatments (i.e., placed the inside building and the outside building) were established for bioremediation of heavy oil to investigate the significance of the role of hydrocarbon-degrading bacteria on them. There was no significant bacterial activity differentiation in the two treatments, and removal of heavy oil by hydrocarbon-degrading bacteria in the outside building was slightly greater than that in the inside building. The values of pH, Eh, EC, and dissolved oxygen (DO) in two treatments indicated that the bioremediation process took place under aerobic conditions (DO: 1-6 mg/l; Eh: 12-300 mV) and neutral

  4. Ethnobotanical study of medicinal plants used in Arjan – Parishan protected area in Fars Province of Iran

    PubMed Central

    Dolatkhahi, Mehdi; Dolatkhahi, Ali; Nejad, Javad Bagher

    2014-01-01

    Objective : Today, medicinal plants are widely used in remedies for several ailments and improvement of human health because of their pharmaceutical properties. This study aimed to document important useful medicinal plants and their medicinal characteristics for treatment of human ailments in the Arjan _ Parishan protected area in Fars province of Iran during 2010-2012. Materials and Methods : Data were obtained using direct interviews with 80 informants particularly those who were more familiar with the herbs and their medicinal properties. Collected plants were recognized and families, genera, and species determined using indispensable references. In this paper, scientific name, local name, parts used, and ways of application and ailments treated using traditional medicinal plant species have been provided. Results : We documented 85 plant species belonging to 39 families and 78 genera used for treating ailments. Among which, Asteraceae with 13 species was the most frequently used family and fruits and leaves were the favored parts for local users. Our results indicated that in this area, the highest compliance in the use of plants in treating ailments were related to the intestinal digestive system (40.8%). Conclusion : The present study is the first contribution to the ethnobotany of this region. Our results showed that some plants are used for medicinal purposes in this region, either for the same or for different purposes. Generally, the results of the present investigation can be used as a basis for selecting useful medicinal plants and also help to preserve precious information that may otherwise be lost to future generations. PMID:25386404

  5. Estimation of effective plant area index for South Korean forests using LiDAR system.

    PubMed

    Kwak, Doo-Ahn; Lee, Woo-Kyun; Kafatos, Menas; Son, Yowhan; Cho, Hyun-Kook; Lee, Seung-Ho

    2010-07-01

    Light Detection and Ranging (LiDAR) systems can be used to estimate both vertical and horizontal forest structure. Woody components, the leaves of trees and the understory can be described with high precision, using geo-registered 3D-points. Based on this concept, the Effective Plant Area Indices (PAI(e)) for areas of Korean Pine (Pinus koraiensis), Japanese Larch (Larix leptolepis) and Oak (Quercus spp.) were estimated by calculating the ratio of intercepted and incident LIDAR laser rays for the canopies of the three forest types. Initially, the canopy gap fraction (G ( LiDAR )) was generated by extracting the LiDAR data reflected from the canopy surface, or inner canopy area, using k-means statistics. The LiDAR-derived PAI(e) was then estimated by using G ( LIDAR ) with the Beer-Lambert law. A comparison of the LiDAR-derived and field-derived PAI(e) revealed the coefficients of determination for Korean Pine, Japanese Larch and Oak to be 0.82, 0.64 and 0.59, respectively. These differences between field-based and LIDAR-based PAI(e) for the different forest types were attributed to the amount of leaves and branches in the forest stands. The absence of leaves, in the case of both Larch and Oak, meant that the LiDAR pulses were only reflected from branches. The probability that the LiDAR pulses are reflected from bare branches is low as compared to the reflection from branches with a high leaf density. This is because the size of the branch is smaller than the resolution across and along the 1 meter LIDAR laser track. Therefore, a better predictive accuracy would be expected for the model if the study would be repeated in late spring when the shoots and leaves of the deciduous trees begin to appear. PMID:20697878

  6. Plant Responses to Bacterial N-Acyl l-Homoserine Lactones are Dependent on Enzymatic Degradation to l-Homoserine

    PubMed Central

    2015-01-01

    Many bacteria use quorum sensing (QS) to regulate phenotypes that ultimately benefit the bacterial population at high cell densities. These QS-dependent phenotypes are diverse and can have significant impacts on the bacterial host, including virulence factor production, motility, biofilm formation, bioluminescence, and root nodulation. As bacteria and their eukaryotic hosts have coevolved over millions of years, it is not surprising that certain hosts appear to be able to sense QS signals, potentially allowing them to alter QS outcomes. Recent experiments have established that eukaryotes have marked responses to the N-acyl l-homoserine lactone (AHL) signals used by Gram-negative bacteria for QS, and the responses of plants to AHLs have received considerable scrutiny to date. However, the molecular mechanisms by which plants, and eukaryotes in general, sense bacterial AHLs remain unclear. Herein, we report a systematic analysis of the responses of the model plants Arabidopsis thaliana and Medicago truncatula to a series of native AHLs and byproducts thereof. Our results establish that AHLs can significantly alter seedling growth in an acyl-chain length dependent manner. Based upon A. thaliana knockout studies and in vitro biochemical assays, we conclude that the observed growth effects are dependent upon AHL amidolysis by a plant-derived fatty acid amide hydrolase (FAAH) to yield l-homoserine. The accumulation of l-homoserine appears to encourage plant growth at low concentrations by stimulating transpiration, while higher concentrations inhibit growth by stimulating ethylene production. These results offer new insights into the mechanisms by which plant hosts can respond to QS signals and the potential role of QS in interkingdom associations. PMID:24918118

  7. Heavy Metals Accumulation of Some Plant Species Grown on Mining Area at Mahad AD`Dahab, Saudi Arabia

    NASA Astrophysics Data System (ADS)

    Al-Farraj, A. S.; Al-Wabel, M. I.

    Samples from different plants species, which grown around Mahad AD`Dahab Mine, have been selected to study their ability to accumulate these heavy metals. These plant species were: Pergularia tomentosa, Calotropis procera, Acacia tortilis, Ochradenus baccatus, Salsola sp., Rhiza strica, Convolvalus sp., Euculeptus sp., Family graminaea and Prosopis juliflora. Moreover, some of soil samples under each plant were collected. Plants and soils samples were analyzed for their contents of As, Cd, Cu, Pb and Zn. Two way ANOVA analysis without interaction was performed to examine the effect of plant species and heavy metals concentration in soil on their accumulation by plants. Although significant differences were not found at 0.01 levels among the plant species, it was found that Pergularia tomentosa was the highest to accumulate heavy metals. Considering the mean of accumulating heavy metals, plant species accumulated heavy metals by this order: Pergularia tomentosa, Euculeptus sp. Convolvalus sp. Family graminaea, Rhiza strica, Acacia tortilis, Prosopis juliflora, Salsola sp. Calotropis procera, Ochradenus baccatus. According to the mean of BAF's, heavy metals concentration of Cd was found to be significantly different than Cu, Pb and Zn. From above, these plants should be described as not-excluder and can be explored further for phytoremediation of metal polluted soils. On other hand, the practice of providing foliage and pods as fodder for live stock should be avoided in Mahad AD`Dahab area.

  8. An Optimized Microplate Assay System for Quantitative Evaluation of Plant Cell Wall Degrading Enzyme Activity of Fungal Culture Extracts

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Developing enzyme cocktails for cellulosic biomass hydrolysis complementary to current cellulase systems is a critical step needed for economically viable biofuels production. Recent genomic analysis indicates that some plant pathogenic fungi are likely a largely untapped resource in which to prospe...

  9. Occurrence and fate of tetracycline and degradation products in municipal biological wastewater treatment plant and transport of them in surface water.

    PubMed

    Topal, Murat; Arslan Topal, E Işıl

    2015-12-01

    The aims of this study are to investigate the fate of tetracycline (TC) and degradation products (DPs) in municipal biological wastewater treatment plant (MBWWTP) located in Elazığ City (Turkey) and to determine the occurrence and transport of TC and DPs in surface water (SW) (Kehli Stream) which the effluents of the plant discharged. The aqueous phase removal of TC, 4-epitetracycline (ETC), 4-epianhydrotetracycline (EATC), and anhydrotetracycline (ATC) in the studied treatment plant was 39.4 ± 1.9, 31.8 ± 1.5, 15.1 ± 0.7, and 16.9 ± 0.8%, respectively. According to the analyses' results of SW samples taken from downstream at every 500-m distance, TC and DPs decreased by the increase in the distance. In downstream, at 2000 m, TC, ETC, EATC, and ATC were 4.12 ± 0.20, 6.70 ± 0.33, 8.31 ± 0.41, and 3.57 ± 0.17 μg/L, respectively. As a result, antibiotic pollution in the SW that takes the effluent of MBWWTP exists. PMID:26566643

  10. Indigenous knowledge for plant species diversity: a case study of wild plants' folk names used by the Mongolians in Ejina desert area, Inner Mongolia, P. R. China.

    PubMed

    Khasbagan; Soyolt

    2008-01-01

    Folk names of plants are the roots of traditional plant biodiversity knowledge. This paper mainly records and analyses the wild plant folk names of the Mongolians in the Ejina desert area based on a field survey for collection and identification of voucher specimens. The results show that a total of 121 folk names of local plants have correspondence with 93 scientific species which belong to 26 families and 70 genera. The correspondence between plants' Mongol folk names and scientific species may be classified as one to one correspondence, multitude to one correspondence and one to multitude correspondence. The Ejina Mongolian plant folk names were formed on the basis of observations and an understanding of the wild plants growing in their desert environment. The high correspondence between folk names and scientific names shows the scientific meaning of folk botanical nomenclature and classification. It is very useful to take an inventory of biodiversity, especially among the rapid rural appraisal (RRA) in studying biodiversity at the community level. PMID:18199323

  11. Indigenous knowledge for plant species diversity: a case study of wild plants' folk names used by the Mongolians in Ejina desert area, Inner Mongolia, P. R. China

    PubMed Central

    Khasbagan; Soyolt

    2008-01-01

    Folk names of plants are the roots of traditional plant biodiversity knowledge. This paper mainly records and analyses the wild plant folk names of the Mongolians in the Ejina desert area based on a field survey for collection and identification of voucher specimens. The results show that a total of 121 folk names of local plants have correspondence with 93 scientific species which belong to 26 families and 70 genera. The correspondence between plants' Mongol folk names and scientific species may be classified as one to one correspondence, multitude to one correspondence and one to multitude correspondence. The Ejina Mongolian plant folk names were formed on the basis of observations and an understanding of the wild plants growing in their desert environment. The high correspondence between folk names and scientific names shows the scientific meaning of folk botanical nomenclature and classification. It is very useful to take an inventory of biodiversity, especially among the rapid rural appraisal (RRA) in studying biodiversity at the community level. PMID:18199323

  12. Plants used in the treatment of leishmanial ulcers due to Leishmania (Viannia) braziliensis in an endemic area of Bahia, Brazil.

    PubMed

    França, F; Lago, E L; Marsden, P D

    1996-01-01

    This paper records the plants used in the treatment of cutaneous leishmaniasis due to Leishmania (Viannia) braziliensis (L(V)b) among the rural population of a cocoa-producing coastal area of Bahia state, Brazil. An enquiry conducted among a hundred patients identified 49 plants species used to treat skin ulceration caused by this Leishmania species. The principal plants used are caju-branco (Anacardium occidentale, Anacardiaceae), used by 65% of the population, folha-fogo (Clidemia hirta,Melastomataceae) 39%, alfavaca-grossa (Plectranthus amboinicus, Lamiaceae) 33%, mastruz (Chenopodium ambrosioides, Chenopodiaceae) 31%, erva-de-santa-maria (Solanum americanum, Solanaceae) (25%) and transagem (Plantago major, Plantaginaceae) 2%. PMID:8701041

  13. Changes of paddy rice planting areas in Northeastern Asia from 1986 to 2014 based on Landsat data

    NASA Astrophysics Data System (ADS)

    Dong, J.; Xiao, X.; Kou, W.; Qin, Y.; Wang, J.; Zhang, G.; Jin, C.; Zhou, Y.; Menarguez, M. A.; Moore, B., III

    2014-12-01

    Paddy rice is an important cereal crop and main grain source for more than half of the global human population. However, knowledge about its area and spatial pattern is still limited due to large changes in agriculture in different regions; for example, higher latitude areas underwent increase (e.g., northeastern China) and decrease (e.g., South Korea) of paddy rice planting areas due to climatic warming, urbanization and other drivers. It is necessary to track paddy rice planting area changes in these regions in the past decades. We developed a pixel- and phenology-based image analysis system, Landsat-RICE, to map the paddy rice by using Landsat imagery. The algorithm was based on the unique physical and spectral characteristics of paddy rice fields during the flooding and transplanting phases. First, Landsat images are preprocessed and time series vegetation indices (NDVI, EVI, and LSWI) are generated. Second, MODIS Land Surface Temperature (LST) data were used to define thermal plant growing season (0 oC, 5 oC and 10 oC), which provides a guide for selection of Landsat images within the period of flooding and transplanting. Third, several non-cropland land cover maps (e.g., permanent water bodies, built-up and barren lands, sparsely vegetated lands, and evergreen vegetation) are produced through analysis of Landsat-based vegetation indices within the plant growing season and combined as a mask. Fourthly, vegetation index data within the time window of flooded and rice transplanting were analyzed to identify flood/transplanting signals. Finally, the maps of paddy rice planting areas were generated through overlying the results from Step 3 and 4. Paddy rice planting area changes were investigated in some hotspots of Northeastern Asia from 1986 to 2014 at 30-m spatial resolution and 5-year interval. This study has demonstrated that our newly developed Landsat-Rice system is robust and effective for tracking paddy rice changes in cold temperate and temperate zones.

  14. Ethnomedicinal studies on plants used by Yanadi tribe of Chandragiri reserve forest area, Chittoor District, Andhra Pradesh, India

    PubMed Central

    Savithramma, Nataru; Yugandhar, Pulicherla; Prasad, Koya Siva; Ankanna, Sade; Chetty, Kummara Madhava

    2016-01-01

    Aim: Ethnomedicinal studies on medicinal plants used by Yanadi tribe of Chandragiri reserve forest area are documented during the period of 2014-2015. The study is mainly focused on medicinal importance of plants used by Yanadi tribe to treat various ailments. Materials and Methods: The information collected on treated ailments, part used, preparation, combination, and addition of ingredients to prepare herbal medicines with the help of standard questionnaire. Results: During the study, 53 types of ailments were treated using 48 medicinal plants belongs to 26 families were documented. Among the medicinal plants, shrubs (15) were most using life form of plants for the preparation of herbal medicines. Leaf part (40%), paste form (33%), and oral administration (63%) of herbal medicines were most preferable. The documented ethnomedicinal importance of this tribe was cross-checked with Dr. Duke’s Phytochemical and Ethnobotanical database shows most of the plants were correlated with this database. Conclusion: There is no record of traditional medicinal knowledge of these villages so far, hence the present study is aimed to document the information on medicinal plants used by Yanadi tribe in Chandragiri reserve forest area. The correlation of ethnomedicinal uses with Dr. Duke’s Phytochemical and Ethnobotanical database clearly indicates the high medicinal significance of claimed data of this Yanadi tribe. PMID:27069725

  15. An overview of degradable polymers

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Many degradable polymers are being investigated for research purpose or for possible commercial use. This overview provides a listing of the more important degradable polymers and their mechanisms of action. Some application areas, particularly in packaging, housewares, personal care, biomaterials, ...

  16. An overview of degradable polymers

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Many degradable polymers are being investigated for research purpose or for possible commercial use. This overview provides a listing of the more important degradable polymers and their mechanisms of action. Some application areas, particularly in packaging, housewares, personal care, biomaterials...

  17. Towards prediction of redistribution of fallout radiocesium on forested area discharged from Fukushima Nuclear Power Plant

    NASA Astrophysics Data System (ADS)

    Miura, Satoru; Aoyama, Michio; Ito, Eriko; Shichi, Koji; Takata, Daisuke; Masaya, Masumori; Sekiya, Nobuhito; Kobayashi, Natsuko; Takano, Naoto; Kaneko, Shinji; Tanoi, Keitaro; Nakanishi, Tomoko

    2015-04-01

    Redistribution of fallout 137Cs on forested area discharged from Fukushima Nuclear Power Plant (FNPP) is an issue of major concern for the people in Fukushima and its surrounding areas. To approach this question we investigated global fallout 137Cs (137Cs-GFO) from nuclear weapon tests in the atmosphere in the 1950s and 60s, and 137Cs distribution derived from FNPP (137Cs-FK) within the whole trees contaminated directly. We examined concentrations and amounts of 137Cs-GFO in surface soils (0-5, 5-15 and 15-30 cm in depth) of 3470 samples at 316 sites all over Japan, which were collected just before the accident of FNPP. We determined 137Cs-GFO activities by NaI well-type scintillation counter with its accuracy verified using measurements by a germanium detector. We divided 316 sampling sites into 10 groups separated by one longitudinal line and four transversal lines on the terrain of Japan islands, then analyzed rainfall and geomorphological effects on 137Cs-GFO inventories. In addition to this dataset, we collected three whole tree samples of 26 year-old Quercus serrata at a contaminated area by FNPP accident in April, 2014 and examined concentrations of 137Cs-FK of above- and belowground tree parts by a germanium detector. We estimated an average of 137Cs-GFO inventories of forest soils in Japan to be 1.7 ± 1.4 kBq m-2 as of 2008. 137Cs-GFO inventories varied largely from 0-7.9 kBq m-2 among the country and accumulated greater in the north-western part along the Sea of Japan side. We detected rainfall effect on 137Cs-GFO inventories, which were greater where winter rainfall was large. As for vertical distribution of 137Cs-GFO, 44% of 137Cs-GFO remained within the uppermost 5 cm of soil profiles whereas the rest of 56% existed in 5-30 cm in depth. This indicated that considerable downward migration of 137Cs-GFO has happened during these fifty years in forest soils in Japan. However, multiple linear regression analysis by geomorphological factors related to soil

  18. Baseline survey for rare plant species and native plant communities within the Kamehameha Schools 'Lupea Safe Harbor Planning Project Area, North Kona District, Island of Hawai'i

    USGS Publications Warehouse

    Jacobi, James; F. R. Warshauer, frwvolcano@hotmail.com; Jonathan Price, jpprice@hawaii.edu

    2010-01-01

    Non-zero baseline values are proposed for the one listed plant species found within the Lupea Project area, one species that is a candidate for listing, and the four other rare species we found that may be considered for listing in the future. Additionally, a zero baseline is proposed for 23 other species that were predicted, but not found within the project area. These include 14 Endangered species, one Threatened species, two candidates for listing, and six species of concern. Subsequent monitoring of the site will be necessary to determine if the populations of these species have increased or decreased relative to their baseline values. It is presumed that the management activities Kamehameha Schools has proposed for this area, particularly removal of the ungulates and weed control, will provide a benefit to the habitat as a whole and allow for natural regeneration and maintenance of the all elements of the plant communities found there.

  19. Presence of plant protection products in three agricultural areas of Regione Lazio.

    PubMed

    Conte, E; Rossi, E; Spera, G; Pompi, V; Carfi', F; Spadoni, A R; Rosati, M; Montereali, M R; Donnarumma, L; Perconti, W

    2003-01-01

    Aim of the research was to verify the impact of plant protection products on three significant agricultural areas of Regione Lazio: Maccarese, Cisterna di Latina, Sabaudia-Terracina. This research studied the presence of some active ingredients, indicated by technicians as distributed, on soil, water, crop and air samples, the last one in greenhouse; the analysis, carried out by multi-residue methods, allowed to investigate also on a large amount of active ingredients not indicated by technicians. The determinations have been obtained, using internal standards, by GC-NPD, GC-ECD, HPLC-UV, HPLC-DAD, with different columns, conditions and wavelength of adsorption. Taking into account the results we could to assert that only a small part of the molecules searched were found in the samples and that they are typical for the crops and the environment treated. In greenhouse, more persistence was founded in wood greenhouse, treated from the outside, probably for the release of a.i. in time from wood and for a better distribution. The active ingredients more frequently founded must be controlled to avoid possible accumulation or leaching, especially for herbicides in the areas of Maccarese and Cisterna di Latina. Furthermore, the molecule on which more attention must be done when applied, are: linuron on carrots, penconazole on zucchini and cymoxanil, often used inappropriately, particularly on minor crops, like red-radish. Although the number of sampling was limited, it has been possible to outline the situation in the three zones considered, for directing choices, that could be more sensible at sanitary spin-off and at the environment. PMID:15151325

  20. Lymphohaematopoietic system cancer incidence in an urban area near a coke oven plant: an ecological investigation

    PubMed Central

    Parodi, S; Vercelli, M; Stella, A; Stagnaro, E; Valerio, F

    2003-01-01

    Aims: To evaluate the incidence risk of lymphohaematopoietic cancers for the 1986–94 period in Cornigliano, a district of Genoa (Italy), where a coke oven is located a few hundred metres from the residential area. Methods: The whole of Genoa and one of its 25 districts (Rivarolo) were selected as controls. The trend of risk around the coke oven was evaluated via Stone's method, while the geographic pattern of such risks across the Cornigliano district was evaluated by computing full Bayes estimates of standardised incidence ratio (FBE-SIR). Results: In males, elevated relative risks (RR) were observed for all lymphohaematopoietic cancers (RR 1.7 v Rivarolo and 1.6 v Genoa), for NHL (RR 2.4 v Rivarolo and 1.7 v Genoa), and for leukaemia (RR 2.4 v Rivarolo and 1.9 v Genoa). In females, statistically non-significant RR were observed. In males no excess of risk was found close to the coke oven. In females, a rising risk for NHL was observed approaching the plant, although statistical significance was not reached, while the risk for leukaemia was not evaluable due to the small number of cases. Analysis of the geographic pattern of risk suggested the presence of a cluster of NHL in both sexes in the eastern part of the district, where a foundry had been operational until the early 1980s. A cluster of leukaemia cases was observed in males in a northern part of the area, where no major sources of benzene seemed to be present. Conclusions: The estimated risks seem to be slightly or not at all related to the distance from the coke oven. The statistically significant higher risks observed in males for NHL and leukaemia, and the clusters of leukaemia in males and of NHL in both sexes deserve further investigations in order to trace the exposures associated with such risks. PMID:12598665

  1. Pollination ecology of a plant in its native and introduced areas

    NASA Astrophysics Data System (ADS)

    Montero-Castaño, Ana; Vilà, Montserrat; Ortiz-Sánchez, F. Javier

    2014-04-01

    Entomophilous and obligate out-crossing non-native plants need to become well integrated in the resident plant-pollinator network to set seeds and become established. However, it is largely unknown how pollination patterns differ between native ranges and those where plants have been introduced.

  2. Release of phenols by plant roots and their potential importance as substrates for PCB-degrading bacteria

    SciTech Connect

    Fletcher, J.S.; Hedge, R.S.

    1994-12-31

    A comparison of the amount of phenols released into the soil by different plant species showed major differences. Total phenols recovered in the leachate following a single flush ranged from a low of 0.09 {mu}g morin equivalents per g of dry sand for indian grass and big blue stem to a high of 0.38 {mu}g morin equivalents per g sand for crabapple. From the values observed for total phenols, the plant species examined can be grouped into the following categories: (1) Low: big blue stem, cottonwood, eupatorium, indian grass, stephanandra, and sumac; (2) Moderate: asparagus, barberry, kudzu, licorice, mulberry, osage orange, perennial sunflower, rose, staghorn, sumac, and tall fescue; (3) High: crabapple. The relationship of these concentrations to microbial growth will be discussed.

  3. Evaluation of the performance degradation at PAFC effect of catalyst degradation on electrode performance

    SciTech Connect

    Nishizaki, K.; Uchida, H.; Watanabe, M.

    1996-12-31

    Aiming commercialization of Phosphoric Acid Fuel Cell (PAFC) power plant, many researches and developments have been contributed. Over 20000 hours operations have been demonstrated by many PAFC power plants. But there is no effective method for the estimation of lifetime of electrochemical cells without a practical long-term operation. Conducted by New Energy and Industrial Technology Development Organization (NEDO), cooperative research projects aiming development of PAFC lifetime estimation method have started since 1995 FY in Japan. As part of this project, this work has been performed to clarify basic phenomena of the performance degradation at PAFCs jointly by Yamanashi University, Phosphoric Acid Fuel Cell Technology Research Association (PAFC-TRA) and PAFC manufacturers (Toshiba Co., Mitsubishi Electric Co, Fuji Electric Co.). Among several main causes of the cell performance degradation, effects of catalyst degradation (reduction in metal surface area, dealloying, changes in catalyst support) on PAFC cathode performances are discussed in this work.

  4. FY95 limited energy study for the area `a` package boiler. Holston Army Ammunition Plant, Kingsport, Tennessee. Final report

    SciTech Connect

    1995-11-03

    Holston Army Ammunition Plant (HSAAP) in Holston, Tennessee, manufactures explosives from raw materials. The facility comprises two separate areas designated Area `A11 and Area 11B`. Each area is served by a steam plant which produces steam for production processes, equipment operation, space heating, domestic water heating, steam tracing, and product storage heating requirements. The purpose of this study is to identify and evaluate the technical and economic feasibility of alternative methods of meeting the steam requirements of the Area 11A11 industrial complex. The following items were specifically requested to be evaluated. Evaluate the use of two new gas-fired packaged boilers sized to meet the requirements of the industrial complex. The new boilers would be installed adjacent to the existing steam plant and would utilize the existing smokestacks and steam distribution system. Evaluate using the existing steam distribution system rather than locating multiple boilers at various sites. Existing steam driven chillers will be replaced with electric driven equipment. Evaluate this impact on the steam system requirements. Field survey and test two existing gas-fired packaged boilers located at the Volunteer Army Ammunition Plant in Chattanooga, Tennessee. The two boilers were last used about 1980 and are presently laid away. The boilers are approximately the same capacity and operating characteristics as the ones at HSAAP. Relocation of the existing boilers and ancillary equipment (feedwater pumps, generators, fans, etc.) would be required as well as repairs or modifications necessary to meet current operating conditions and standards.

  5. Confirmatory Survey of the Fuel Oil Tank Area - Humboldt Bay Power Plant, Eureka, California

    SciTech Connect

    ADAMS, WADE C

    2012-04-09

    During the period of February 14 to 15, 2012, ORISE performed radiological confirmatory survey activities for the former Fuel Oil Tank Area (FOTA) and additional radiological surveys of portions of the Humboldt Bay Power Plant site in Eureka, California. The radiological survey results demonstrate that residual surface soil contamination was not present significantly above background levels within the FOTA. Therefore, it is ORISE’s opinion that the radiological conditions for the FOTA surveyed by ORISE are commensurate with the site release criteria for final status surveys as specified in PG&E’s Characterization Survey Planning Worksheet. In addition, the confirmatory results indicated that the ORISE FOTA survey unit Cs-137 mean concentrations results compared favorably with the PG&E FOTA Cs-137 mean concentration results, as determined by ORISE from the PG&E characterization data. The interlaboratory comparison analyses of the three soil samples analyzed by PG&E’s onsite laboratory and the ORISE laboratory indicated good agreement for the sample results and provided confidence in the PG&E analytical procedures and final status survey soil sample data reporting.

  6. Pharmaceuticals and consumer products in four wastewater treatment plants in urban and suburb areas of Shanghai.

    PubMed

    Sui, Qian; Wang, Dan; Zhao, Wentao; Huang, Jun; Yu, Gang; Cao, Xuqi; Qiu, Zhaofu; Lu, Shuguang

    2015-04-01

    Ten pharmaceuticals and two consumer products were investigated in four wastewater treatment plants (WWTPs) in Shanghai, China. The concentrations of target compounds in the wastewater influents ranged from below the limit of quantification (LOQ) to 9340 ng/L, with the frequency of detection of 31-100%, and the removal efficiencies were observed to be -82 to 100% in the four WWTPs. Concentrations of most target compounds (i.e. diclofenac, caffeine, metoprolol, sulpiride) in the wastewater influents were around three to eight times higher in urban WWTPs than in suburb ones, probably due to the different population served and lifestyles. Mean concentrations of target compounds in the wastewater influent generally decreased by 5-76% after rainfall due to the dilution of raw sewage by rainwater, which infiltrated into the sewer system. In the WWTPs located in the suburb area, the increased flow of wastewater influent led to a shortened hydraulic retention time (HRT) and decreased removal efficiencies of some compounds. On the contrary, the influence of rainfall was not significant on the removal efficiencies of investigated compounds in urban WWTPs, probably due to the almost unchanged influent flow, good removal performance, or bypass system employed. PMID:25391230

  7. Geographic profiling to assess the risk of rare plant poaching in natural areas

    USGS Publications Warehouse

    Young, J.A.; Van Manen, F.T.; Thatcher, C.A.

    2011-01-01

    We demonstrate the use of an expert-assisted spatial model to examine geographic factors influencing the poaching risk of a rare plant (American ginseng, Panax quinquefolius L.) in Shenandoah National Park, Virginia, USA. Following principles of the analytic hierarchy process (AHP), we identified a hierarchy of 11 geographic factors deemed important to poaching risk and requested law enforcement personnel of the National Park Service to rank those factors in a series of pair-wise comparisons. We used those comparisons to determine statistical weightings of each factor and combined them into a spatial model predicting poaching risk. We tested the model using 69 locations of previous poaching incidents recorded by law enforcement personnel. These locations occurred more frequently in areas predicted by the model to have a higher risk of poaching than random locations. The results of our study can be used to evaluate resource protection strategies and to target law enforcement activities. ?? Springer Science+Business Media, LLC (outside the USA) 2011.

  8. Assessment of the impact of degraded shear wall stiffnesses on seismic plant risk and seismic design loads

    SciTech Connect

    Klamerus, E.W.; Bohn, M.P.; Johnson, J.J.; Asfura, A.P.; Doyle, D.J.

    1994-02-01

    Test results sponsored by the USNRC have shown that reinforced shear wall (Seismic Category I) structures exhibit stiffnesses and natural frequencies which are smaller than those calculated in the design process. The USNRC has sponsored Sandia National Labs to perform an evaluation of the effects of the reduced frequencies on several existing seismic PRAs in order to determine the seismic risk implications inherent in these test results. This report presents the results for the re-evaluation of the seismic risk for three nuclear power plants: the Peach Bottom Atomic Power Station, the Zion Nuclear Power Plant, and Arkansas Nuclear One -- Unit 1 (ANO-1). Increases in core damage frequencies for seismic initiated events at Peach Bottom were 25 to 30 percent (depending on whether LLNL or EPRI hazard curves were used). At the ANO-1 site, the corresponding increases in plant risk were 10 percent (for each set of hazard curves). Finally, at Zion, there was essentially no change in the computed core damage frequency when the reduction in shear wall stiffness was included. In addition, an evaluation of deterministic ``design-like`` structural dynamic calculations with and without the shear stiffness reductions was made. Deterministic loads calculated for these two cases typically increased on the order of 10 to 20 percent for the affected structures.

  9. Operation of the xanthophyll cycle and degradation of D1 protein in the inducible CAM plant, Talinum triangulare, under water deficit.

    PubMed

    Pieters, Alejandro J; Tezara, Wilmer; Herrera, Ana

    2003-09-01

    Changes in photochemical activity induced by water deficit were investigated in Talinum triangulare, an inducible CAM plant. The aim was to analyse the interactions between C3 photosynthesis, induction and activity of CAM, photosynthetic energy regulation and the mechanisms responsible for photoprotection and photoinhibition under water stress. Gas exchange, chlorophyll a fluorescence, titratable acidity, carotenoid composition and relative contents of the PSII reaction centre protein (D1) were measured. A decrease in xylem tension (psi) from -0.14 to -0.2 MPa substantially decreased daytime net CO2 assimilation and daily carbon gain, and induced CAM, as shown by CO2 assimilation during the night and changes in titratable acidity; a further decrease in psi decreased nocturnal acid accumulation by 60%. Non-photochemical quenching of chlorophyll a fluorescence (NPQ) increased with water deficit, but decreased with a more severe drought (psi below -0.2 MPa), when CAM activity was low. NPQ was lower at 0900 h (during maximum decarboxylation rates) than at 1400 h, when malate pools were depleted. Down-regulation of PSII activity related to the rise in NPQ was indicated by a smaller quantum yield of PSII photochemistry (phiPSII) in droughted compared with watered plants. However, phiPSII was larger at 0900 h than at 1400 h. The de-epoxidation state of the xanthophyll cycle increased with drought and was linearly related to NPQ. Intrinsic quantum yield of PSII (FV/FM) measured at dusk was also lower in severely stressed plants than in controls. Under maximum photosynthetic photon flux and high decarboxylation rates of organic acids, the D1 content in leaves of droughted plants showing maximal CAM activity was identical to the controls; increased drought decreased D1 content by more than 30%. Predawn samples had D1 contents similar to leaves sampled at peak irradiance, with no signs of recovery after 12 h of darkness. It is concluded that under mild water stress, early

  10. Operation of the Xanthophyll Cycle and Degradation of D1 Protein in the Inducible CAM plant, Talinum triangulare, under Water Deficit

    PubMed Central

    PIETERS, ALEJANDRO J.; TEZARA, WILMER; HERRERA, ANA

    2003-01-01

    Changes in photochemical activity induced by water deficit were investigated in Talinum triangulare, an inducible CAM plant. The aim was to analyse the interactions between C3 photosynthesis, induction and activity of CAM, photosynthetic energy regulation and the mechanisms responsible for photoprotection and photoinhibition under water stress. Gas exchange, chlorophyll a fluorescence, titratable acidity, carotenoid composition and relative contents of the PSII reaction centre protein (D1) were measured. A decrease in xylem tension (ψ) from –0·14 to –0·2 MPa substantially decreased daytime net CO2 assimilation and daily carbon gain, and induced CAM, as shown by CO2 assimilation during the night and changes in titratable acidity; a further decrease in ψ decreased nocturnal acid accumulation by 60 %. Non-photochemical quenching of chlorophyll a fluorescence (NPQ) increased with water deficit, but decreased with a more severe drought (ψ below –0·2 MPa), when CAM activity was low. NPQ was lower at 0900 h (during maximum decarboxylation rates) than at 1400 h, when malate pools were depleted. Down-regulation of PSII activity related to the rise in NPQ was indicated by a smaller quantum yield of PSII photochemistry (ΦPSII) in droughted compared with watered plants. However, ΦPSII was larger at 0900 h than at 1400 h. The de-epoxidation state of the xanthophyll cycle increased with drought and was linearly related to NPQ. Intrinsic quantum yield of PSII (FV/FM) measured at dusk was also lower in severely stressed plants than in controls. Under maximum photosynthetic photon flux and high decarboxylation rates of organic acids, the D1 content in leaves of droughted plants showing maximal CAM activity was identical to the controls; increased drought decreased D1 content by more than 30 %. Predawn samples had D1 contents similar to leaves sampled at peak irradiance, with no signs of recovery after 12 h of darkness. It is concluded that under mild water

  11. Late pleistocene aggradation and degradation of the lower colorado river: Perspectives from the Cottonwood area and other reconnaissance below Boulder Canyon

    USGS Publications Warehouse

    Lundstrom, S.C.; Mahan, S.A.; Paces, J.B.; Hudson, M.R.; House, P.K.; Malmon, D.V.; Blair, J.L.; Howard, K.A.

    2008-01-01

    Where the lower Colorado River traverses the Basin and Range Province below the Grand Canyon, significant late Pleistocene aggradation and subsequent degrada tion of the river are indicated by luminescence, paleomagnetic, and U-series data and stratigraphy. Aggradational, finely bedded reddish mud, clay, and silt are underlain and overlain by cross-bedded to plane-bedded fine sand and silt. That sequence is commonly disconformably overlain by up to 15 m of coarse sand, rounded exotic gravel, and angular, locally derived gravel. Luminescence dates on the fine sediments range from ca. 40 ka to 70 ka, considering collective uncertainties. A section of fine grained sediments over a vertical range of 15 m shows normal polarity magnetization and little apparent secular variation beyond dispersion that can be explained by com paction. Aggradation on large local tributaries such as Las Vegas Wash appears to have been coeval with that of the Colorado River. The upper limits of erosional rem nants of the sequence define a steeper grade above the historical river, and these late Pleistocene deposits are greater than 100 m above the modern river north of 35??N. Ter race gravels inset below the upper limit of the aggradational sequence yield 230Th dates that range from ca. 32 ka to 60 ka and indicate that degradation of the river system in this area closely followed aggradation. The thick sequence of rhythmically bedded mud and silt possibly indicates set tings that were ponded laterally between valley slopes and levees of the aggrading river. Potential driving mechanisms for such aggradation and degradation include sediment-yield response to climate change, drought, fire, vegetation-ecosystem dynam ics, glaciation, paleofloods, groundwater discharge, and building and destruction of natural dams produced by volcanism and landslides. ?? 2008 The Geological Society of America.

  12. Preliminary Results of Reductive Dechlorination Conducted at the X-749/X-120 Area of the DOE Portsmouth Gaseous Diffusion Plant, Piketon, Ohio

    SciTech Connect

    Rieske, D. E.; Baird, D. R.; Lawson, N. E.

    2006-07-01

    Reductive dechlorination is being implemented at the X-749/X-120 trichloroethene (TCE) plume South Barrier Wall containment site at the Department of Energy (DOE) Portsmouth Gaseous Diffusion Plant (PORTS). The purpose of this paper is to present the effectiveness of the reductive dechlorination at PORTS. Reductive dechlorination is an in situ remediation technology that utilizes existing subsurface microbes to biologically degrade volatile organic compounds in groundwater. Monitoring in the barrier wall area reveals the presence of Hydrogen Release Compound (HRC) injected in the spring of 2004 in two groundwater monitoring wells closest to the injection points. Oxidation/reduction potential in these two wells has decreased steadily since injection, but has not yet reached optimal reducing levels for TCE degradation. Monitoring the effectiveness of the injection is hampered by near-stagnant groundwater flow due in part to the South Barrier Wall. The X-749/X-120 TCE groundwater plume lies beneath approximately 91 acres in the southern portion of PORTS, and extends southward threatening to cross the DOE property boundary. A 1,077-foot long subsurface bentonite barrier wall was installed in 1993 at the southern DOE property boundary to restrict movement of contaminated groundwater from traveling off-site until other remedial technologies could be implemented. In 2003, TCE was detected on the south side of the barrier wall (but still within DOE property) above drinking water standards of 5 micrograms per liter. Monitoring has also detected TCE in groundwater beyond the western edge of the barrier wall. In the spring of 2004, DOE initiated the injection of a reductive dechlorination compound known as Hydrogen Release Compound-extended release formula (HRC-X) into the subsurface using direct push technology (DPT). The HRC-X was injected within the saturated zone from the top of bedrock to 10 feet above bedrock as the probe was withdrawn from the push. A total of 180 DPT

  13. Understanding the Role of Defective Invertases in Plants: Tobacco Nin88 Fails to Degrade Sucrose1[W

    PubMed Central

    Le Roy, Katrien; Vergauwen, Rudy; Struyf, Tom; Yuan, Shuguang; Lammens, Willem; Mátrai, Janka; De Maeyer, Marc; Van den Ende, Wim

    2013-01-01

    Cell wall invertases (cwINVs), with a high affinity for the cell wall, are fundamental enzymes in the control of plant growth, development, and carbon partitioning. Most interestingly, defective cwINVs have been described in several plant species. Their highly attenuated sucrose (Suc)-hydrolyzing capacity is due to the absence of aspartate-239 (Asp-239) and tryptophan-47 (Trp-47) homologs, crucial players for stable binding in the active site and subsequent hydrolysis. However, so far, the precise roles of such defective cwINVs remain unclear. In this paper, we report on the functional characterization of tobacco (Nicotiana tabacum) Nin88, a presumed fully active cwINV playing a crucial role during pollen development. It is demonstrated here that Nin88, lacking both Asp-239 and Trp-47 homologs, has no invertase activity. This was further supported by modeling studies and site-directed mutagenesis experiments, introducing both Asp-239 and Trp-47 homologs, leading to an enzyme with a distinct Suc-hydrolyzing capacity. In vitro experiments suggest that the addition of Nin88 counteracts the unproductive and rather aspecific binding of tobacco cwINV1 to the wall, leading to higher activities in the presence of Suc and a more efficient interaction with its cell wall inhibitor. A working model is presented based on these findings, allowing speculation on the putative role of Nin88 in muro. The results presented in this work are an important first step toward unraveling the specific roles of plant defective cwINVs. PMID:23447526

  14. Strontium concentrations in chamisa (Chrysothamnus nauseosus) shrub plants growing in a former liquid waste disposal area in Bayo Canyon

    SciTech Connect

    Fresquez, P.R.; Foxx, T.S.; Naranjo, L. Jr.

    1995-11-01

    Chamisa (Chrysothamnus nauseosus) shrub plants growing in a former liquid waste disposal site Solid Waste Management Unit [SWMU] 10-003(c) in Bayo Canyon at Los Alamos National Laboratory (LANL) were collected and analyzed for strontium ({sup 90}Sr) and total uranium. Surface soil samples were also collected from below (understory) and between (interspace) shrub canopies. Both chamisa plants growing over SWMU 10-003(c) contained significantly higher concentrations of {sup 90}Sr than a control plant -- one plant, in particular, contained 90, 500 pCi {sup 90}Sr g{sup {minus}1} ash in top-growth material. Similarly, soil surface samples collected underneath and between plants contained {sup 90}Sr concentrations above background and LANL screening action levels; this probably occurred as a result of chamisa plant leaf fall contaminating the soil understory area followed by water and/or winds moving {sup 90}Sr to the soil interspace area. Although some soil surface migration of {sup 90}Sr from SWMU 10-003(c) has occurred, the level of {sup 90}Sr in sediments collected downstream of SWMU 10-003(c) at the Bayo Canyon/State Road 5 intersection was still within regional (background) concentrations.

  15. Formic and Acetic Acids in Degradation Products of Plant Volatiles Elicit Olfactory and Behavioral Responses from an Insect Vector.

    PubMed

    George, Justin; Robbins, Paul S; Alessandro, Rocco T; Stelinski, Lukasz L; Lapointe, Stephen L

    2016-05-01

    Volatile phytochemicals play a role in orientation by phytophagous insects. We studied antennal and behavioral responses of the Asian citrus psyllid, Diaphorina citri, vector of the citrus greening disease pathogen. Little or no response to citrus leaf volatiles was detected by electroantennography. Glass cartridges prepared with β-ocimene or citral produced no response initially but became stimulatory after several days. Both compounds degraded completely in air to a number of smaller molecules. Two peaks elicited large antennal responses and were identified as acetic and formic acids. Probing by D. citri of a wax substrate containing odorants was significantly increased by a blend of formic and acetic acids compared with either compound separately or blends containing β-ocimene and/or citral. Response surface modeling based on a 4-component mixture design and a 2-component mixture-amount design predicted an optimal probing response on wax substrate containing a blend of formic and acetic acids. Our study suggests that formic and acetic acids play a role in host selection by D. citri and perhaps by phytophagous insects in general even when parent compounds from which they are derived are not active. These results have implications for the investigation of arthropod olfaction and may lead to elaboration of attract-and-kill formulations to reduce nontarget effects of chemical control in agriculture. PMID:26857741

  16. Metagenome and metaproteome analyses of microbial communities in mesophilic biogas-producing anaerobic batch fermentations indicate concerted plant carbohydrate degradation.

    PubMed

    Hanreich, Angelika; Schimpf, Ulrike; Zakrzewski, Martha; Schlüter, Andreas; Benndorf, Dirk; Heyer, Robert; Rapp, Erdmann; Pühler, Alfred; Reichl, Udo; Klocke, Michael

    2013-07-01

    Microbial communities in biogas batch fermentations, using straw and hay as co-substrates, were analyzed at the gene and protein level by metagenomic and metaproteomic approaches. The analysis of metagenomic data revealed that the Clostridiales and Bacteroidales orders were prevalent in the community. However, the number of sequences assigned to the Clostridiales order decreased during fermentation, whereas the number of sequences assigned to the Bacteroidales order increased. In addition, changes at the functional level were monitored and the metaproteomic analyses detected transporter proteins and flagellins, which were expressed mainly by members of the Bacteroidetes and Firmicutes phyla. A high number of sugar transporters, expressed by members of the Bacteroidetes, proved their potential to take up various glycans efficiently. Metagenome data also showed that methanogenic organisms represented less than 4% of the community, while 20-30% of the identified proteins were of archeal origin. These data suggested that methanogens were disproportionally active. In conclusion, the community studied was capable of digesting the recalcitrant co-substrate. Members of the Firmicutes phylum seemed to be the main degraders of cellulose, even though expression of only a few glycoside hydrolases was detected. The Bacteroidetes phylum expressed a high number of sugar transporters and seemed to specialize in the digestion of other polysaccharides. Finally, it was found that key enzymes of methanogenesis were expressed in high quantities, indicating the high metabolic activity of methanogens, although they only represented a minor group within the microbial community. PMID:23694815

  17. Fructan biosynthesis and degradation as part of plant metabolism controlling sugar fluxes during durum wheat kernel maturation

    PubMed Central

    Cimini, Sara; Locato, Vittoria; Vergauwen, Rudy; Paradiso, Annalisa; Cecchini, Cristina; Vandenpoel, Liesbeth; Verspreet, Joran; Courtin, Christophe M.; D'Egidio, Maria Grazia; Van den Ende, Wim; De Gara, Laura

    2015-01-01

    Wheat kernels contain fructans, fructose based oligosaccharides with prebiotic properties, in levels between 2 and 35 weight % depending on the developmental stage of the kernel. To improve knowledge on the metabolic pathways leading to fructan storage and degradation, carbohydrate fluxes occurring during durum wheat kernel development were analyzed. Kernels were collected at various developmental stages and quali-quantitative analysis of carbohydrates (mono- and di-saccharides, fructans, starch) was performed, alongside analysis of the activities and gene expression of the enzymes involved in their biosynthesis and hydrolysis. High resolution HPAEC-PAD of fructan contained in durum wheat kernels revealed that fructan content is higher at the beginning of kernel development, when fructans with higher DP, such as bifurcose and 1,1-nystose, were mainly found. The changes in fructan pool observed during kernel maturation might be part of the signaling pathways influencing carbohydrate metabolism and storage in wheat kernels during development. During the first developmental stages fructan accumulation may contribute to make kernels more effective Suc sinks and to participate in osmotic regulation while the observed decrease in their content may mark the transition to later developmental stages, transition that is also orchestrated by changes in redox balance. PMID:25750648

  18. Suppression of RNAi by dsRNA-degrading RNaseIII enzymes of viruses in animals and plants.

    PubMed

    Weinheimer, Isabel; Jiu, Yaming; Rajamäki, Minna-Liisa; Matilainen, Olli; Kallijärvi, Jukka; Cuellar, Wilmer J; Lu, Rui; Saarma, Mart; Holmberg, Carina I; Jäntti, Jussi; Valkonen, Jari P T

    2015-03-01

    Certain RNA and DNA viruses that infect plants, insects, fish or poikilothermic animals encode Class 1 RNaseIII endoribonuclease-like proteins. dsRNA-specific endoribonuclease activity of the RNaseIII of rock bream iridovirus infecting fish and Sweet potato chlorotic stunt crinivirus (SPCSV) infecting plants has been shown. Suppression of the host antiviral RNA interference (RNAi) pathway has been documented with the RNaseIII of SPCSV and Heliothis virescens ascovirus infecting insects. Suppression of RNAi by the viral RNaseIIIs in non-host organisms of different kingdoms is not known. Here we expressed PPR3, the RNaseIII of Pike-perch iridovirus, in the non-hosts Nicotiana benthamiana (plant) and Caenorhabditis elegans (nematode) and found that it cleaves double-stranded small interfering RNA (ds-siRNA) molecules that are pivotal in the host RNA interference (RNAi) pathway and thereby suppresses RNAi in non-host tissues. In N. benthamiana, PPR3 enhanced accumulation of Tobacco rattle tobravirus RNA1 replicon lacking the 16K RNAi suppressor. Furthermore, PPR3 suppressed single-stranded RNA (ssRNA)--mediated RNAi and rescued replication of Flock House virus RNA1 replicon lacking the B2 RNAi suppressor in C. elegans. Suppression of RNAi was debilitated with the catalytically compromised mutant PPR3-Ala. However, the RNaseIII (CSR3) produced by SPCSV, which cleaves ds-siRNA and counteracts antiviral RNAi in plants, failed to suppress ssRNA-mediated RNAi in C. elegans. In leaves of N. benthamiana, PPR3 suppressed RNAi induced by ssRNA and dsRNA and reversed silencing; CSR3, however, suppressed only RNAi induced by ssRNA and was unable to reverse silencing. Neither PPR3 nor CSR3 suppressed antisense-mediated RNAi in Drosophila melanogaster. These results show that the RNaseIII enzymes of RNA and DNA viruses suppress RNAi, which requires catalytic activities of RNaseIII. In contrast to other viral silencing suppression proteins, the RNaseIII enzymes are homologous in

  19. Suppression of RNAi by dsRNA-Degrading RNaseIII Enzymes of Viruses in Animals and Plants

    PubMed Central

    Matilainen, Olli; Kallijärvi, Jukka; Cuellar, Wilmer J.; Lu, Rui; Saarma, Mart; Holmberg, Carina I.; Jäntti, Jussi; Valkonen, Jari P. T.

    2015-01-01

    Certain RNA and DNA viruses that infect plants, insects, fish or poikilothermic animals encode Class 1 RNaseIII endoribonuclease-like proteins. dsRNA-specific endoribonuclease activity of the RNaseIII of rock bream iridovirus infecting fish and Sweet potato chlorotic stunt crinivirus (SPCSV) infecting plants has been shown. Suppression of the host antiviral RNA interference (RNAi) pathway has been documented with the RNaseIII of SPCSV and Heliothis virescens ascovirus infecting insects. Suppression of RNAi by the viral RNaseIIIs in non-host organisms of different kingdoms is not known. Here we expressed PPR3, the RNaseIII of Pike-perch iridovirus, in the non-hosts Nicotiana benthamiana (plant) and Caenorhabditis elegans (nematode) and found that it cleaves double-stranded small interfering RNA (ds-siRNA) molecules that are pivotal in the host RNA interference (RNAi) pathway and thereby suppresses RNAi in non-host tissues. In N. benthamiana, PPR3 enhanced accumulation of Tobacco rattle tobravirus RNA1 replicon lacking the 16K RNAi suppressor. Furthermore, PPR3 suppressed single-stranded RNA (ssRNA)—mediated RNAi and rescued replication of Flock House virus RNA1 replicon lacking the B2 RNAi suppressor in C. elegans. Suppression of RNAi was debilitated with the catalytically compromised mutant PPR3-Ala. However, the RNaseIII (CSR3) produced by SPCSV, which cleaves ds-siRNA and counteracts antiviral RNAi in plants, failed to suppress ssRNA-mediated RNAi in C. elegans. In leaves of N. benthamiana, PPR3 suppressed RNAi induced by ssRNA and dsRNA and reversed silencing; CSR3, however, suppressed only RNAi induced by ssRNA and was unable to reverse silencing. Neither PPR3 nor CSR3 suppressed antisense-mediated RNAi in Drosophila melanogaster. These results show that the RNaseIII enzymes of RNA and DNA viruses suppress RNAi, which requires catalytic activities of RNaseIII. In contrast to other viral silencing suppression proteins, the RNaseIII enzymes are homologous in

  20. Subsurface-controlled geological maps for the Y-12 plant and adjacent areas of Bear Creek Valley

    SciTech Connect

    King, H.L.; Haase, C.S.

    1987-04-01

    Bear Creek Valley in the vicinity of the US Department of Energy Y-12 Plant is underlain by Middle to Late Cambrian strata of the Conasauga Group. The group consists of interbedded limestones, shales, mudstones, and siltstones, and it can be divided into six discrete formations