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Sample records for del pan artocarpus

  1. Novel stilbenes from Artocarpus nanchuanensis.

    PubMed

    Zhang, Pu-Zhao; Gu, Jian; Zhang, Guo-Lin

    2015-01-01

    Four new stilbene derivatives, hypargystilbenes B-E (1-4), together with seven known compounds (5-11), were isolated from the stems of Artocarpus nanchuanensis S.S. Chang. Their structures were elucidated on the basis of spectral data. Hypargystilbene B, hypargystilbene D, and hypargystilbene E exhibited protein tyrosine phosphatase 1B inhibitory effects with corresponding IC50 values of 3.23, 37.31, and 2.53 nM. PMID:25747599

  2. Prenylated flavones from Artocarpus altilis.

    PubMed

    Shamaun, Shireen Shaharina; Rahmani, Mawardi; Hashim, Najihah Mohd; Ismail, Hazar Bebe Mohd; Sukari, Mohd Aspollah; Lian, Gwendoline Ee Cheng; Go, Rusea

    2010-10-01

    Six prenylated flavones, including one new compound, were isolated and identified from the stem bark extracts of Artocarpus altilis. The new prenylated flavone hydroxyartocarpin (1) was characterized as 3-(gamma,gamma-dimethylallyl)-6-isopentenyl-5,8,2',4'-tetrahydroxy-7-methoxyflavone and the known compounds were artocarpin (2), morusin (3), cycloartobiloxanthone (4), cycloartocarpin A (5) and artoindonesianin V (6). The structures of the compounds were determined by spectroscopic methods (IR, MS, (1)H-NMR and (13)C-NMR) and comparison with published data for the known compounds. PMID:20526745

  3. Development of microsatellite loci in Artocarpus altilis (Moraceae) and cross-amplification in congeneric species

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Microsatellite loci were isolated and characterized from enriched genomic libraries of Artocarpus altilis (breadfruit) and tested in three other Artocarpus species and one hybrid. The microsatellite markers provide new tools for further studies in Artocarpus. Nineteen microsatellite primers were tes...

  4. Two new xanthones from Artocarpus obtusus.

    PubMed

    Hashim, Najihah; Rahmani, Mawardi; Sukari, Mohd A; Ali, Abdul M; Alitheen, Noorjahan B; Go, Rosea; Ismail, Hazar B M

    2010-02-01

    Two new xanthones, pyranocycloartobiloxanthone A (1) and dihydroartoindonesianin C (2), were isolated from the stem bark of Artocarpus obtusus Jarrett by chromatographic separation. Their structures were determined by using spectroscopic methods and comparison with known related compounds. Pyranocycloartobiloxanthone A (1) showed strong free radical scavenging activity by using DPPH assay as well as cytotoxicity towards K562, HL-60, and MCF7 cell lines. PMID:20390751

  5. Peter Pan.

    ERIC Educational Resources Information Center

    Storr, Catherine

    1992-01-01

    Offers a contemporary view of J. M. Barrie's life and his classic story, "Peter Pan." Suggests that "Peter Pan" does not really speak for today's children and that the time for Peter Pan's retirement has come. (PRA)

  6. Flavonoids from Artocarpus anisophyllus and their bioactivities.

    PubMed

    Lathiff, Siti Mariam Abdul; Jemaon, Noraini; Abdullah, Siti Awanis; Jamil, Shajarahtunnur

    2015-03-01

    Two new prenylated flavonoids, 4',5-dihydroxy-6,7-(2,2-dimethylpyrano)-2'-methoxy-8-γ,γ-dimethylallylflavone 1 and 3'-hydroxycycloartocarpin 2 along with six known flavonoids, 5,7-dihydroxy-4'-methoxy-8-prenylflavanone 3, isobavachalcone 4, pyranocycloartobiloxanthone A 5, artocarpin 6, chaplashin 7 and cycloartocarpin 8 were isolated for the first time from the leaves and the heartwoods of Artocarpus anisophyllus Miq. The structures of isolated flavonoids were elucidated spectroscopically using 1D and 2D NMR, FTIR, MS, UV and also by comparison with literature data. These flavonoids were screened for their antioxidant and tyrosinase inhibitory activities. The dichloromethane and ethyl acetate crude extracts together with 3'-hydroxycycloartocarpin 2, pyranocycloartobiloxanthone A 5 and artocarpin 6 showed DPPH (2,2-diphenyl-l-picrylhydrazyl) radical scavenging activity with SC50 values of 80.2, 40.0, 152.9, 20.2 and 140.0 μg/mL in 30 min, respectively. Pyranocycloartobiloxanthone A 5 exhibited significant tyrosinase inhibitory activity against tyrosinase from mushroom with IC50 values of 60.5 μg/mL. PMID:25924513

  7. Chloroplast microsatellite markers for Artocarpus (Moraceae) developed from transcriptome sequences

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Premise of the study: Chloroplast microsatellite loci were characterized from transcriptomes of Artocarpus (A.) altilis (breadfruit) and A. camansi (breadnut). They were tested in A. odoratissimus (terap) and A. altilis and evaluated in silico for two congeners. Methods and Results: 15 simple seque...

  8. Physicochemical properties of Venezuelan breadfruit (Artocarpus altilis) starch.

    PubMed

    Rincón, Alicia Mariela; Padilla, Fanny C

    2004-12-01

    Artocarpus altilis, seedless variety, is a fruit-producing plant which is cultived in Margarita Island, Venezuela, and is consumed by the inhabitants of the region. Its chemical composition and physical characteristics were determined. The chemical (AOAC and AACC methods), physicochemical, morphometric characteristics, viscoamylographic properties and digestibility in vitro of starch from Artocarpus were studied. The starch yield was 18.5 g/100 g (dw)w with a purity of 98.86%, 27.68 and 72.32% of amylose and amylopectin, respectively. Scanning electron microscopy showed irregular-rounded granules. Swelling power, water absorption and solubility values were determined and found to be higher than that of corn and amaranth starch. The amylographic study showed a gelatinization temperature at 73.3 degrees C, with high stability during heating and cooling cycles. Artocarpus starch could also be categorized in the group of mixed short chain branched/long chain branched glucan starches, this agrees with digestibility results that showed a high degree of digestibility in vitro. These results might be advantageous in medical and food use. PMID:15969272

  9. Prenylated Dihydrochalcones from Artocarpus altilis as Antiausterity Agents.

    PubMed

    Nguyen, Mai Thanh Thi; Nguyen, Nhan Trung; Awale, Suresh

    2015-01-01

    Human pancreatic cancer cell lines have remarkable tolerance to nutrition starvation, which enables them to survive under a tumor microenvironment. A novel antiausterity strategy in anticancer drug discovery led to the discovery of agents that preferentially inhibit the survival of cancer cells under low nutrient conditions. Artocarpus altilis (Family: Moraceae) is commonly referred to as breadfruit, traditionally for the treatment of many diseases. Many prenylated flavonoid and prenylated chalocones together with their cancer cell cytotoxicity were reported from this plant. This chapter briefly summarizes the constituents, biosynthesis, cytotoxicity, and antiausterity activity on PANC-1 human pancreatic cancer cell line of A. altilis. PMID:26298457

  10. Antiproliferative activity of xanthones isolated from Artocarpus obtusus.

    PubMed

    Hashim, Najihah Mohd; Rahmani, Mawardi; Ee, Gwendoline Cheng Lian; Sukari, Mohd Aspollah; Yahayu, Maizatulakmal; Oktima, Winda; Ali, Abd Manaf; Go, Rusea

    2012-01-01

    An investigation of the chemical constituents in Artocarpus obtusus species led to the isolation of three new xanthones, pyranocycloartobiloxanthone A (1), dihydroartoindonesianin C (2), and pyranocycloartobiloxanthone B (3). The compounds were subjected to antiproliferative assay against human promyelocytic leukemia (HL60), human chronic myeloid leukemia (K562), and human estrogen receptor (ER+) positive breast cancer (MCF7) cell lines. Pyranocycloartobiloxanthone A (1) consistently showed strong cytotoxic activity against the three cell lines compared to the other two with IC(50) values of 0.5, 2.0 and 5.0 μg/mL, respectively. Compound (1) was also observed to exert antiproliferative activity and apoptotic promoter towards HL60 and MCF7 cell lines at respective IC(50) values. The compound (1) was not toxic towards normal cell lines human nontumorigenic breast cell line (MCF10A) and human peripheral blood mononuclear cells (PBMCs) with IC(50) values of more than 30 μg/mL. PMID:21960741

  11. Hedgehog inhibitors from Artocarpus communis and Hyptis suaveolens.

    PubMed

    Arai, Midori A; Uchida, Kyoko; Sadhu, Samir K; Ahmed, Firoj; Koyano, Takashi; Kowithayakorn, Thaworn; Ishibashi, Masami

    2015-08-01

    The hedgehog (Hh) signaling pathway plays crucial roles in cell maintenance and proliferation during embryonic development. Naturally occurring Hh inhibitors were isolated from Artocarpus communis and Hyptis suaveolens using our previously constructed cell-based assay system. Bioactivity guided fractionation led to the isolation of 15 compounds, including seven new compounds (4, 5, 6, 7, and 9-11). The isolated compounds showed cytotoxicity against a cancer cell line (PANC1) in which Hh signaling was abnormally activated. Several compounds (12-14; GLI1 transcriptional inhibition IC50=7.6, 4.7, and 4.0 μM, respectively) inhibited Hh related protein (BCL2) expression. Moreover, compounds 1, 12, and 13 disrupted GLI1 and DNA complex formation. PMID:26178912

  12. Geranyl dihydrochalcones from Artocarpus altilis and their antiausteric activity.

    PubMed

    Nguyen, Mai Thanh Thi; Nguyen, Nhan Trung; Nguyen, Khang Duy Huu; Dau, Hien Thu Thi; Nguyen, Hai Xuan; Dang, Phu Hoang; Le, Tam Minh; Nguyen Phan, Trong Huu; Tran, Anh Hai; Nguyen, Bac Duy; Ueda, Jun-Ya; Awale, Suresh

    2014-02-01

    Human pancreatic cancer cell lines have remarkable tolerance to nutrition starvation, which enables them to survive under a tumor microenvironment. The search for agents that preferentially inhibit the survival of cancer cells under low nutrient conditions is a novel antiausterity strategy in anticancer drug discovery. In this study, the methanolic extract of the leaves of Artocarpus altilis showed 100 % preferential cytotoxicity against PANC-1 human pancreatic cancer cells under nutrient-deprived conditions at a concentration of 50 µg/mL. Further investigation of this extract led to the isolation of eight new geranylated dihydrochalcones named sakenins A-H (1-8) together with four known compounds (9-12). Among them, sakenins F (6) and H (8) were identified as potent preferentially cytotoxic candidates with PC50 values of 8.0 µM and 11.1 µM, respectively. PMID:24431013

  13. Antiproliferative Activity of Xanthones Isolated from Artocarpus obtusus

    PubMed Central

    Hashim, Najihah Mohd; Rahmani, Mawardi; Ee, Gwendoline Cheng Lian; Sukari, Mohd Aspollah; Yahayu, Maizatulakmal; Oktima, Winda; Ali, Abd Manaf; Go, Rusea

    2012-01-01

    An investigation of the chemical constituents in Artocarpus obtusus species led to the isolation of three new xanthones, pyranocycloartobiloxanthone A (1), dihydroartoindonesianin C (2), and pyranocycloartobiloxanthone B (3). The compounds were subjected to antiproliferative assay against human promyelocytic leukemia (HL60), human chronic myeloid leukemia (K562), and human estrogen receptor (ER+) positive breast cancer (MCF7) cell lines. Pyranocycloartobiloxanthone A (1) consistently showed strong cytotoxic activity against the three cell lines compared to the other two with IC50 values of 0.5, 2.0 and 5.0 μg/mL, respectively. Compound (1) was also observed to exert antiproliferative activity and apoptotic promoter towards HL60 and MCF7 cell lines at respective IC50 values. The compound (1) was not toxic towards normal cell lines human nontumorigenic breast cell line (MCF10A) and human peripheral blood mononuclear cells (PBMCs) with IC50 values of more than 30 μg/mL. PMID:21960741

  14. SCHISTOSOMICIDAL ACTIVITY OF THE CRUDE EXTRACT OF ARTOCARPUS LAKOOCHA.

    PubMed

    Preyavichyapugdee, Narin; Sangfuang, Manaw; Chaiyapum, Saowapark; Sriburin, Suwatcharaporn; Pootaeng-on, Yupa; Chusongsang, Phiraphol; Jiraungkoorskul, Wannee; Preyavichyapugdee, Mananya; Sobhon, Prasert

    2016-01-01

    Puag-Haad is a traditional anthelmintic drug used to treat taeniasis in Thailand and Lao PDR. It is derived from the aqueous extract of the plant Artocarpus lakoocha. We investigated the in vitro anthelmintic properties of Puag-Haad against Schistosoma mansoni. Adult worms were incubated in M-199 medium containing 250, 500 and 750 μg/ml of Puag-Haad or praziquantel (PZQ) at a concentration of 175 μg/ml for 3, 6, 12 and 24 hours. The relative motility (RM value), survival index (SI) and tegument alterations seen under scanning electron microscope were assessed at each incubation time. The results showed the crude extract of A. lakoocha at a concentration of 250 μg/ml was more effective in causing damage than PZQ at a concentration of 175 μg/ml using RM and SI values. The major target organ affected by Puag-Haad was the tegument. The damage was greater at higher concentrations of the crude extract. It is likely tetrahydroxystilbene (THS), the main compound in Puag-Haad, caused the damage. THS could be a future candidate as a schistosomal drug. Further studies are needed to explore its mechanism, efficiency and safety in vivo. PMID:27086420

  15. Diversity of the breadfruit complex (Artocarpus, Moraceae): Genetic characterization of critical germplasm

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Breadfruit (Artocarpus altilis, Moraceae) is a traditional staple starch crop in Oceania and has been introduced throughout the tropics. This study uses microsatellite markers to characterize the genetic diversity of breadfruit and its wild relatives housed in the USDA National Plant Germplasm Syste...

  16. Characterization of antiproliferative activity constituents from Artocarpus heterophyllus.

    PubMed

    Zheng, Zong-Ping; Xu, Yang; Qin, Chuan; Zhang, Shuang; Gu, Xiaohong; Lin, Yingying; Xie, Guobin; Wang, Mingfu; Chen, Jie

    2014-06-18

    Artocarpus heterophyllus is an evergreen fruit tree cultivated in many tropical regions. Previous studies have shown that some of its compositions exhibited potential tyrosinase inhibition activities. This study indentified 8 new phenolic compounds, artoheterophyllins E-J (1-6), 4-geranyl-2',3,4',5-tetrahydroxy-cis-stilbene (7), and 5-methoxymorican M (8) and 2 new natural compounds (9 and 10), 2,3-dihydro-5,7-dihydroxy-2-(2-hydroxy-4-methoxyphenyl)-4H-benzopyran-4-one and 6-[(1S,2S)-1,2-dihydroxy-3-methylbutyl]-2-(2,4-dihydroxyphenyl)-5-hydroxy-7-methoxy-3-(3-methyl-2-buten-1-yl)-4H-1-benzopyran-4-one, together with 23 known compounds (11-33), from the ethanol extract of the wood of A. heterophyllus. The structures of the eight new compounds (1-8) and two new natural compounds were established by extensive 1D- and 2D-NMR experiments. The anticancer effects of the isolated compounds were examined in MCF-7, H460, and SMMC-7721 human cancer cell lines by MTT assay. Compounds 5, 11, 12, and 30 significantly reduced the cell viabilities of these cell lines. Especially, compounds 11 and 30 resulted in more potent cytotoxicity than the positive control, 5-fluorouracil (5-Fu), in SMMC-7721 cell line, with IC50 values of 15.85 and 12.06 μM, whereas compound 30 exhibited more potent cytotoxicity than 5-Fu in NCI-H460 cell line, with an IC50 value of 5.19 μM. In addition, this study suggests that compounds 11 and 30 from the wood of A. heterophyllus have anticancer potential via MAPK pathways. PMID:24854862

  17. Antioxidant, antimicrobial and tyrosinase inhibitory activities of xanthones isolated from Artocarpus obtusus F.M. Jarrett.

    PubMed

    Hashim, Najihah Mohd; Rahmani, Mawardi; Ee, Gwendoline Cheng Lian; Sukari, Mohd Aspollah; Yahayu, Maizatulakmal; Amin, Muhamad Aizat Mohd; Ali, Abd Manaf; Go, Rusea

    2012-01-01

    One of the most promising plants in biological screening test results of thirteen Artocarpus species was Artocarpus obtusus FM Jarrett and detailed phytochemical investigation of powdered dried bark of the plant has led to the isolation and identification of three xanthones; pyranocycloartobiloxanthone A (1), dihydroartoindonesianin C (2) and pyranocycloartobiloxanthone B (3). These compounds were screened for antioxidant, antimicrobial and tyrosinase inhibitory activities. Pyranocycloartobiloxanthone A (1) exhibited a strong free radical scavenger towards DPPH free radicals with IC50 value of 2 µg/mL with prominent discoloration observed in comparison with standard ascorbic acid, α-tocopherol and quercetin, The compound also exhibited antibacterial activity against methicillin resistant Staphylococcus aureus (ATCC3359) and Bacillus subtilis (clinically isolated) with inhibition zone of 20 and 12 mm, respectively. However the other two xanthones were found to be inactive. For the tyrosinase inhibitory activity, again compound (1) displayed strong activity comparable with the standard kojic acid. PMID:22614861

  18. Chloroplast microsatellite markers for Artocarpus (Moraceae) developed from transcriptome sequences1

    PubMed Central

    Gardner, Elliot M.; Laricchia, Kristen M.; Murphy, Matthew; Ragone, Diane; Scheffler, Brian E.; Simpson, Sheron; Williams, Evelyn W.; Zerega, Nyree J. C.

    2015-01-01

    Premise of the study: Chloroplast microsatellite loci were characterized from transcriptomes of Artocarpus altilis (breadfruit) and A. camansi (breadnut). They were tested in A. odoratissimus (terap) and A. altilis and evaluated in silico for two congeners. Methods and Results: Fifteen simple sequence repeats (SSRs) were identified in chloroplast sequences from four Artocarpus transcriptome assemblies. The markers were evaluated using capillary electrophoresis in A. odoratissimus (105 accessions) and A. altilis (73). They were also evaluated in silico in A. altilis (10), A. camansi (6), and A. altilis × A. mariannensis (7) transcriptomes. All loci were polymorphic in at least one species, with all 15 polymorphic in A. camansi. Per species, average alleles per locus ranged between 2.2 and 2.5. Three loci had evidence of fragment-length homoplasy. Conclusions: These markers will complement existing nuclear markers by enabling confident identification of maternal and clone lines, which are often important in vegetatively propagated crops such as breadfruit. PMID:26421253

  19. Four new prenylated flavonoids and xanthones from the root bark of Artocarpus nobilis.

    PubMed

    Jayasinghe, U L B; Samarakoon, T B; Kumarihamy, B M M; Hara, N; Fujimoto, Y

    2008-01-01

    Chemical investigation of the n-butanol extract from the methanol extract of the root bark of Artocarpus nobilis furnished four new prenylated flavonoids together with artonin E 2'-methylether (4), isoartonin E 2'-methylether (5), dihydroisoartonin E 2'-methylether (6), artonin V 2'-methylether (7), artobiloxanthone (1), artonin E (2) and cycloartobiloxanthone (3). All these compounds showed strong radical scavenging properties towards DPPH radical. PMID:17855020

  20. Loving Peter Pan.

    ERIC Educational Resources Information Center

    Kinkaid, James R.

    2003-01-01

    Explores the story of "Peter Pan." Considers its creation, its role on the stage, and its impact on society. Considers how "Peter Pan" is about the inability to have make-believe and the true stick together: it dramatizes an artistic failure, the failure to make the vision of the play successful. (SG)

  1. Low-coverage, whole-genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery1

    PubMed Central

    Gardner, Elliot M.; Johnson, Matthew G.; Ragone, Diane; Wickett, Norman J.; Zerega, Nyree J. C.

    2016-01-01

    Premise of the study: We used moderately low-coverage (17×) whole-genome sequencing of Artocarpus camansi (Moraceae) to develop genomic resources for Artocarpus and Moraceae. Methods and Results: A de novo assembly of Illumina short reads (251,378,536 pairs, 2 × 100 bp) accounted for 93% of the predicted genome size. Predicted coding regions were used in a three-way orthology search with published genomes of Morus notabilis and Cannabis sativa. Phylogenetic markers for Moraceae were developed from 333 inferred single-copy exons. Ninety-eight putative MADS-box genes were identified. Analysis of all predicted coding regions resulted in preliminary annotation of 49,089 genes. An analysis of synonymous substitutions for pairs of orthologs (Ks analysis) in M. notabilis and A. camansi strongly suggested a lineage-specific whole-genome duplication in Artocarpus. Conclusions: This study substantially increases the genomic resources available for Artocarpus and Moraceae and demonstrates the value of low-coverage de novo assemblies for nonmodel organisms with moderately large genomes. PMID:27437173

  2. Safety Evaluation of Artocarpus altilis as Pharmaceutical Agent in Wistar Rats.

    PubMed

    Sairam, Sudha; Urooj, Asna

    2014-01-01

    This study was designed to elucidate the acute toxicity of Artocarpus altilis leaf and bark extracts. In acute toxicity study, no mortality or any toxic reaction was recorded in any group after 14 days of administering the extracts (2000 mg Kg(-1) BW). The extracts (ALA, ABA, ALM, and ABM) did not cause any behavioural or physical changes in experimental rats. There was no significant (P ≤ 0.05) difference in the biochemical parameters analysed between the groups. Slight elevation in activities of AST and ALT in extract treated groups was observed, but this did not exert any deleterious effect on the normal metabolism which was supported by the histopathology of liver. Histopathological studies showed no remarkable changes after 14 days of oral administration of ALA, ABA, ALM, and ABM extracts. The study contributes to establishing the nontoxic quality parameters of Artocarpus altilis leaf and bark parts and the results suggest the safety of the extracts in therapeutic uses. PMID:24803928

  3. Isolation and identification of mosquito (Aedes aegypti) biting deterrent fatty acids from male inflorescences of breadfruit (Artocarpus altilis (Parkinson)Fosberg)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Dried male inflorescences of breadfruit (Artocarpus altilis, Moraceae) are burned in communities throughout Oceania to repel flying insects, including mosquitoes. This study was conducted to identify chemicals responsible for mosquito deterrence. Various crude extracts were evaluated, and the most a...

  4. Screening antimutagenic and antiproliferative properties of extracts isolated from Jackfruit pulp (Artocarpus heterophyllus Lam).

    PubMed

    Ruiz-Montañez, G; Burgos-Hernández, A; Calderón-Santoyo, M; López-Saiz, C M; Velázquez-Contreras, C A; Navarro-Ocaña, A; Ragazzo-Sánchez, J A

    2015-05-15

    The present focused on the study of the antimutagenic and antiproliferative potential of pulp Jackfruit (Artocarpus heterophyllus Lam) extract, using Salmonella typhimurium tester strains TA98 and TA100 with metabolic activation (S9) and a cancer cell line M12.C3.F6 (murine B-cell lymphoma), respectively. Jackfruit pulp extract was sequentially fractionated by chromatography (RP-HPLC) and each fraction was tested for antimutagenic and antiproliferative activities. The organic extracts obtained from Jackfruit pulp reduced the number of revertants caused by aflatoxin B1 (AFB1) and proliferation of cells M12.C3.F6; a dose-response relationship was showed. Sequential RP-HPLC fractionation of the active extracts produced both antimutagenic and/or antiproliferative fractions. These results suggested that the Jackfruit contained compounds with chemoprotective properties to reduce the mutagenicity of AFB1, also proliferation of a cancer cell line. PMID:25577099

  5. Chemical constituents derived from Artocarpus xanthocarpus as inhibitors of melanin biosynthesis.

    PubMed

    Jin, Yu-Jing; Lin, Cha-Chi; Lu, Tzy-Ming; Li, Jih-Heng; Chen, Ih-Sheng; Kuo, Yueh-Hsiung; Ko, Horng-Huey

    2015-09-01

    Twenty-four compounds, including the previously unknown artoxanthocarpuone A, artoxanthocarpuone B, hydroxylakoochin A, methoxylakoochin A, epoxylakoochin A, and artoxanthol, were isolated and characterized spectroscopically. Among them, artoxanthol is stilbene oligomer presumably constructed in a 5,11,12-triphenyl hexahydrochrysene scaffold by a Diels-Alder type of reaction, for which a biosynthetic pathway is proposed. Artoxanthol, alboctalol, steppogenin, norartocarpetin, resveratrol, oxyresveratrol, and chlorophorin potently inhibited mushroom tyrosinase activity with IC50 values from 0.9 to 5.7 μM that were all far stronger than the positive controls. Artoxanthocarpuone A, artoxanthocarpuone B, methoxylakoochin A, lakoochin A, cudraflavone C, artonin A, resveratrol, and chlorophorin reduced tyrosinase activity and inhibited α-melanocyte-stimulating hormone-induced melanin production in B16F10 melanoma cells without affecting cell proliferation. Collectively, the results suggest that the constituents of Artocarpus xanthocarpus have potential to be used as depigmentation agents. PMID:26188915

  6. Isolation, transformation, anticancer, and apoptosis activity of lupeyl acetate from Artocarpus integra

    NASA Astrophysics Data System (ADS)

    Suwito, Hery; Heffen, Wan Lelly; Cahyana, Herry; Suwarso, Wahyudi Priyono

    2016-03-01

    Lupeyl acetate -a major constituent of the bark of Artocarpus integra- was isolated and then transformed chemically into lupeol and lupenone by hydrolysis and oxidation reaction respectively. The molecular structures of the prepared compounds were determined based on FTIR, MS and NMR spectrum evidences. Their anticancer activities were determined against breast cancer cells MCF-7 using neutral red assay, while their apoptotic activity were confirmed by flowcytometric analysis using Annexin V-FTIC assay and DNA fragmentation. The IC50 of Lupeyl acetate, lupeol, and lupenone were 48.79; 43.09; and 8.07 µg/mL respectively. The results of flowcytometric analysis and DNA fragmentation showed that anticancer activity of the prepared compounds following apoptosis mechanism.

  7. Cytotoxic and NF-κB Inhibitory Constituents of Artocarpus rigida

    PubMed Central

    Ren, Yulin; Kardono, Leonardus B. S.; Riswan, Soedarsono; Chai, Heebyung; Farnsworth, Norman R.; Soejarto, Djaja D.; Carcache de Blanco, Esperanza J.; Kinghorn, A. Douglas

    2010-01-01

    Four new prenylated flavonoids (1–4), a new stilbenoid (5), and nine known compounds were isolated from the twigs of Artocarpus rigida, collected in Indonesia. The structures of the new compounds were determined by analysis of their spectroscopic data, and the absolute configuration at C-12 of 1 and 2 and the known compounds artonin O (6), artobiloxanthone (7), and cycloartobiloxanthone (8), was determined by analysis of their CD and NMR spectroscopic data. Several of the compounds were cytotoxic towards HT-29 human colon cancer cells, with the most potent being compound 2 and the known compounds 6 and 8. Of the substances obtained, compounds 1 and 7 were the most active in the NF-κB p50 and p65 assay, respectively. PMID:20384315

  8. The Pan Zhichang Incident

    ERIC Educational Resources Information Center

    Yuchen, Zhu

    2007-01-01

    This article examines why Pan Zhichang, a well-known professor and Ph.D. candidate supervisor at Nanjing University, has repeatedly been accused of plagiarism. It may not be difficult to check whether he has committed plagiarism, but seeking the deeper social and systemic reasons for a person's repeated "negligence" is indeed a thought-provoking…

  9. Timing of deformation in the Sarandí del Yí Shear Zone, Uruguay: Implications for the amalgamation of western Gondwana during the Neoproterozoic Brasiliano-Pan-African Orogeny

    NASA Astrophysics Data System (ADS)

    Oriolo, Sebastián.; Oyhantçabal, Pedro; Wemmer, Klaus; Basei, Miguel A. S.; Benowitz, Jeffrey; Pfänder, Jörg; Hannich, Felix; Siegesmund, Siegfried

    2016-03-01

    U-Pb and Hf zircon (sensitive high-resolution ion microprobe -SHRIMP- and laser ablation-inductively coupled plasma-mass spectrometry -LA-ICP-MS-), Ar/Ar hornblende and muscovite, and Rb-Sr whole rock-muscovite isochron data from the mylonites of the Sarandí del Yí Shear Zone, Uruguay, were obtained in order to assess the tectonothermal evolution of this crustal-scale structure. Integration of these results with available kinematic, structural, and microstructural data of the shear zone as well as with geochronological data from the adjacent blocks allowed to constrain the onset of deformation along the shear zone at 630-625 Ma during the collision of the Nico Pérez Terrane and the Río de la Plata Craton. The shear zone underwent dextral shearing up to 596 Ma under upper to middle amphibolite facies conditions, which was succeeded by sinistral shearing under lower amphibolite to upper greenschist facies conditions until at least 584 Ma. After emplacement of the Cerro Caperuza granite at 570 Ma, the shear zone underwent only cataclastic deformation between the late Ediacaran and the Cambrian. The Sarandí del Yí Shear Zone is thus related to the syncollisional to postcollisional evolution of the amalgamation of the Río de la Plata Craton and the Nico Pérez Terrane. Furthermore, the obtained data reveal that strain partitioning and localization with time, magmatism emplacement, and fluid circulation are key processes affecting the isotopic systems in mylonitic belts, revealing the complexity in assessing the age of deformation of long-lived shear zones.

  10. Pan-Tetris: an interactive visualisation for Pan-genomes

    PubMed Central

    2015-01-01

    Background Large-scale genome projects have paved the way to microbial pan-genome analyses. Pan-genomes describe the union of all genes shared by all members of the species or taxon under investigation. They offer a framework to assess the genomic diversity of a given collection of individual genomes and moreover they help to consolidate gene predictions and annotations. The computation of pan-genomes is often a challenge, and many techniques that use a global alignment-independent approach run the risk of not separating paralogs from orthologs. Also alignment-based approaches which take the gene neighbourhood into account often need additional manual curation of the results. This is quite time consuming and so far there is no visualisation tool available that offers an interactive GUI for the pan-genome to support curating pan-genomic computations or annotations of orthologous genes. Results We introduce Pan-Tetris, a Java based interactive software tool that provides a clearly structured and suitable way for the visual inspection of gene occurrences in a pan-genome table. The main features of Pan-Tetris are a standard coordinate based presentation of multiple genomes complemented by easy to use tools compensating for algorithmic weaknesses in the pan-genome generation workflow. We demonstrate an application of Pan-Tetris to the pan-genome of Staphylococcus aureus. Conclusions Pan-Tetris is currently the only interactive pan-genome visualisation tool. Pan-Tetris is available from http://bit.ly/1vVxYZT PMID:26328606

  11. "A Constant Transit of Finding": Fantasy as Realisation in "Pan's Labyrinth"

    ERIC Educational Resources Information Center

    Clark, Roger; McDonald, Keith

    2010-01-01

    This article considers Guillermo Del Toro's "Pan's Labyrinth" as a text which utilises key codes and conventions of children's literature as a means of encountering the trauma of Fascism. The article begins by placing "Pan's Labyrinth" at a contextual crossroads involving fairy tale and a Spanish cinematic tradition and considers the significance…

  12. Artocarpus communis Induces Autophagic Instead of Apoptotic Cell Death in Human Hepatocellular Carcinoma Cells.

    PubMed

    Tzeng, Cheng-Wei; Tzeng, Wen-Sheng; Lin, Liang-Tzung; Lee, Chiang-Wen; Yen, Ming-Hong; Yen, Feng-Lin; Lin, Chun-Ching

    2015-01-01

    For centuries, natural plant extracts have played an important role in traditional medicine for curing and preventing diseases. Studies have revealed that Artocarpus communis possess various bioactivities, such as anti-inflammation, anti-oxidant, and anticancer activities. A. communis offers economic value as a source of edible fruit, yields timber, and is widely used in folk medicines. However, little is known about its molecular mechanisms of anticancer activity. Here, we demonstrate the antiproliferative activity of A. communis methanol extract (AM) and its dichloromethane fraction (AD) in two human hepatocellular carcinoma (HCC) cell lines, HepG2 and PLC/PRF/5. Colony assay showed the long-term inhibitory effect of both extracts on cell growth. DNA laddering and immunoblotting analyses revealed that both extracts did not induce apoptosis in the hepatoma cell lines. AM and AD-treated cells demonstrated different cell cycle distribution compared to UV-treated cells, which presented apoptotic cell death with high sub-G1 ratio. Instead, acridine orange staining revealed that AM and AD triggered autophagosome accumulation. Immunoblotting showed a significant expression of autophagy-related proteins, which indicated the autophagic cell death (ACD) of hepatoma cell lines. This study therefore demonstrates that A. communis AM and its dichloromethane fraction can induce ACD in HCC cells and elucidates the potential of A. communis extracts for development as anti tumor therapeutic agents that utilize autophagy as mechanism in mediating cancer cell death. PMID:25967668

  13. Antihepatoma activity of Artocarpus communis is higher in fractions with high artocarpin content.

    PubMed

    Tzeng, Cheng-Wei; Yen, Feng-Lin; Lin, Liang-Tzung; Lee, Chiang-Wen; Yen, Ming-Hong; Tzeng, Wen-Sheng; Lin, Chun-Ching

    2014-01-01

    Extracts from natural plants have been used in traditional medicine for many centuries worldwide. Artocarpus communis is one such plant that has been used to treat liver cirrhosis, hypertension, and diabetes. To our knowledge, this study is the first to investigate the antihepatoma activity of A. communis toward HepG2 and PLC/PRF/5 cells and the first to explore the relationship between antihepatoma activity and the active compound artocarpin content in different fractions of A. communis. A. communis methanol extract and fractions induced dose-dependent reduction of tumor cell viability. DNA laddering analysis revealed that A. communis extract and fractions did not induce apoptosis in HepG2 and PLC/PRF/5 cells. Instead, acridine orange staining revealed that A. communis triggered autophagic cell death in a dose-dependent manner. The antihepatoma activity of A. communis is attributable to artocarpin. The fractions with the highest artocarpin content were also the fractions with the highest antihepatoma activity in the following order: dichloromethane fraction > methanol extract > ethyl acetate fraction > n-butanol fraction > n-hexane fraction. Taken together, A. communis showed antihepatoma activity through autophagic cell death. The effect was related to artocarpin content. Artocarpin could be considered an indicator of the anticancer potential of A. communis extract. PMID:25133268

  14. Prenylated flavonoids and resveratrol derivatives isolated from Artocarpus communis with the ability to overcome TRAIL resistance.

    PubMed

    Toume, Kazufumi; Habu, Tadashi; Arai, Midori A; Koyano, Takashi; Kowithayakorn, Thaworn; Ishibashi, Masami

    2015-01-23

    In a screening program on natural products that can abrogate tumor necrosis factor (TNF)-related apoptosis-inducing ligand (TRAIL) resistance, four new prenylated flavonoid and resveratrol derivatives (1-4) were isolated from Artocarpus communis, together with eight known prenylflavonoids (5-12). The structures of 1-4 were elucidated spectroscopically. Pannokin D [corrected] (1) (2 μM) and artonin E (5) (3 μM) potently exhibited the ability to overcome TRAIL resistance. Artonin E (5) induced caspase-dependent apoptosis in combination with TRAIL, increased caspase 3/7 activity, and enhanced the protein levels of p53 and DR5. Moreover, this substance decreased cell viability in combination with TRAIL and enhanced the protein levels of DR5, and these effects were mediated by increases in the production of ROS (reactive oxygen species). Thus, artonin E (5) was found to induce extrinsic apoptotic cell death by the ROS- and p53-mediated up-regulation of DR5 expression in AGS cells. PMID:25537111

  15. Transcriptome and selected metabolite analyses reveal points of sugar metabolism in jackfruit (Artocarpus heterophyllus Lam.).

    PubMed

    Hu, Lisong; Wu, Gang; Hao, Chaoyun; Yu, Huan; Tan, Lehe

    2016-07-01

    Artocarpus heterophyllus Lam., commonly known as jackfruit, produces the largest tree-borne fruit known thus far. The edible part of the fruit develops from the perianths, and contains many sugar-derived compounds. However, its sugar metabolism is poorly understood. A fruit perianth transcriptome was sequenced on an Illumina HiSeq 2500 platform, producing 32,459 unigenes with an average length of 1345nt. Sugar metabolism was characterized by comparing expression patterns of genes related to sugar metabolism and evaluating correlations with enzyme activity and sugar accumulation during fruit perianth development. During early development, high expression levels of acid invertases and corresponding enzyme activities were responsible for the rapid utilization of imported sucrose for fruit growth. The differential expression of starch metabolism-related genes and corresponding enzyme activities were responsible for starch accumulated before fruit ripening but decreased during ripening. Sucrose accumulated during ripening, when the expression levels of genes for sucrose synthesis were elevated and high enzyme activity was observed. The comprehensive transcriptome analysis presents fundamental information on sugar metabolism and will be a useful reference for further research on fruit perianth development in jackfruit. PMID:27181946

  16. Preliminary nutritional and biological potential of Artocarpus heterophyllus L. shell powder.

    PubMed

    Sharma, Anubhuti; Gupta, Priti; Verma, A K

    2015-03-01

    Artocarpus heterophyllus shell powder was investigated in terms of its nutritional and biological potential. A thorough examination of shell powder demonstrated its potential as a source of minerals, β carotene and dietary fiber, which were assessed gravimetrically & spectrophotometrically. This showed 3.05 ± 0.19 g 100 g(-1) DW of alkaloids followed by saponins and tannins. Three different extracts; acetone, methanol, & mix solvent were used to evaluate phenolic & flavonoid content, antioxidant & antimicrobial activity, GC/MS screening and quantitative analysis of polyphenols. Among all, the methanol extract showed highest antioxidant activity evaluated by DPPH, FRAP & ABTS assays and was significantly correlated with phenolic and flavonoid contents. Phenolic & flavonoid content was found to be 158 ± 0.34 mg (GAE) and 10.0 ± 0.64 mg (CE) respectively. The results of antimicrobial activity showed that L. monocytogenes was more susceptible to all extracts followed by other microorganisms. Catechin, ascorbic & chlorogenic acids were identified as major polyphenols analyzed by LC-MS/MS. GC/MS analysis showed that it contains a variety of compounds with different therapeutic activities. The study revealed that A. heterophyllus shell is a good source of natural antioxidants & other bioactive compounds and can be used in cosmetics, medicines and functional food application. PMID:25745202

  17. Artocarpus gomezianus aided green synthesis of ZnO nanoparticles: luminescence, photocatalytic and antioxidant properties.

    PubMed

    Suresh, D; Shobharani, R M; Nethravathi, P C; Pavan Kumar, M A; Nagabhushana, H; Sharma, S C

    2015-04-15

    We report green synthesis of multifunctional ZnO nanoparticles (NPs) using Artocarpus gomezianus (AG) extract as fuel by solution combustion synthesis. The formation of NPs was confirmed by powder XRD, SEM, TEM and UV-Visible studies. The NPs were subjected for photoluminescence, photodegradative and antioxidant studies. XRD data reveals that the ZnO NPs possess wurtzite structure. UV-Visible spectrum shows absorbance maximum at 370 nm which corresponds to the energy band gap of 3.3 eV. Morphology studies indicate the highly porous nature of the NPs. PL spectra of NPs found to display very interesting blue, green and red emissions upon excitation at 325 nm. The NPs exhibit potential photocatalytic activity towards the degradation of methylene blue (MB) dye upon exposure to sun light and UV light. ZnO NPs found to have considerable antioxidant activity against DPPH (2,2-diphenyl-1-picrylhydrazyl) free radicals. The study successfully demonstrates a simple and eco-friendly method for the synthesis of efficient multifunctional ZnO nanoparticles using green synthetic approach. PMID:25668693

  18. Artonin E and Structural Analogs from Artocarpus Species Abrogates Estrogen Receptor Signaling in Breast Cancer.

    PubMed

    Etti, Imaobong; Abdullah, Rasedee; Hashim, Najihah Mohd; Kadir, Arifah; Abdul, Ahmad Bustamam; Etti, Christopher; Malami, Ibrahim; Waziri, Peter; How, Chee Wun

    2016-01-01

    The increasing rate of mortality ensued from breast cancer has encouraged research into safer and efficient therapy. The human Estrogen receptor α has been implicated in the majority of reported breast cancer cases. Molecular docking employing Glide, Schrodinger suite 2015, was used to study the binding affinities of small molecules from the Artocarpus species after their drug-like properties were ascertained. The structure of the ligand-binding domain of human Estrogen receptor α was retrieved from Protein Data Bank while the structures of compounds were collected from PubChem database. The binding interactions of the studied compounds were reported as well as their glide scores. The best glide scored ligand, was Artonin E with a score of -12.72 Kcal when compared to other studied phytomolecules and it evoked growth inhibition of an estrogen receptor positive breast cancer cells in submicromolar concentration (3.8-6.9 µM) in comparison to a reference standard Tamoxifen (18.9-24.1 µM) within the tested time point (24-72 h). The studied ligands, which had good interactions with the target receptor, were also drug-like when compared with 95% of orally available drugs with the exception of Artoelastin, whose predicted physicochemical properties rendered it less drug-like. The in silico physicochemical properties, docking interactions and growth inhibition of the best glide scorer are indications of the anti-breast cancer relevance of the studied molecules. PMID:27367662

  19. Antimicrobial activities of the methanol extract and compounds from Artocarpus communis (Moraceae)

    PubMed Central

    2011-01-01

    Background Artocarpus communis is used traditionally in Cameroon to treat several ailments, including infectious and associated diseases. This work was therefore designed to investigate the antimicrobial activities of the methanol extract (ACB) and compounds isolated from the bark of this plant, namely peruvianursenyl acetate C (1), α-amyrenol or viminalol (2), artonin E (4) and 2-[(3,5-dihydroxy)-(Z)-4-(3-methylbut-1-enyl)phenyl]benzofuran-6-ol (5). Methods The liquid microdilution assay was used in the determination of the minimal inhibitory concentration (MIC) and the minimal microbicidal concentration (MMC), against seven bacterial and one fungal species. Results The MIC results indicated that ACB as well as compounds 4 and 5 were able to prevent the growth of all tested microbial species. All other compounds showed selective activities. The lowest MIC value of 64 μg/ml for the crude extract was recorded on Staphylococcus aureus ATCC 25922 and Escherichia coli ATCC 8739. The corresponding value of 32 μg/ml was recorded with compounds 4 and 5 on Pseudomonas aeruginosa PA01 and compound 5 on E. coli ATCC 8739, their inhibition effect on P. aeruginosa PA01 being more than that of chloramphenicol used as reference antibiotic. Conclusion The overall results of this study provided supportive data for the use of A. communis as well as some of its constituents for the treatment of infections associated with the studied microorganisms. PMID:21612612

  20. Prenylflavonoids isolated from Artocarpus champeden with TRAIL-resistance overcoming activity.

    PubMed

    Minakawa, Tomohiro; Toume, Kazufumi; Arai, Midori A; Koyano, Takashi; Kowithayakorn, Thaworn; Ishibashi, Masami

    2013-12-01

    In a screening program for bioactive natural products which can overcome Tumor necrosis factor (TNF)-related apoptosis-inducing ligand (TRAIL)-resistance, three prenylflavonoids, named pannokin A-C, were isolated from a MeOH extract of Artocarpus champeden (Moraceae) roots, together with three known prenylflavonoids. The structures of pannokin A-C were elucidated by spectroscopic analysis. These of the prenylflavonoids in combination with TRAIL, showed cytotoxic activity in sensitizing TRAIL-resistant human gastric adenocarcinoma (AGS) cells. Of these compounds, heterophyllin increased caspase 3/7 activity when combined with TRAIL in AGS cells, and enhanced the expression of DR4 and DR5 mRNA. Moreover, heterophyllin up-regulated mRNA expression of CCAAT/enhancer-binding protein-homologous protein (CHOP) which was reported to be an important regulator of DR5 expression. Thus, heterophyllin was presumed to cause a CHOP-dependent up-regulation of DR5 expression resulting in apoptosis in AGS cells. PMID:24074554

  1. Isolation of tyrosinase inhibitors from Artocarpus heterophyllus and use of its extract as antibrowning agent.

    PubMed

    Zheng, Zong-Ping; Cheng, Ka-Wing; To, James Tsz-Kin; Li, Haitao; Wang, Mingfu

    2008-12-01

    A new furanoflavone, 7-(2,4-dihydroxyphenyl)-4-hydroxy-2-(2-hydroxy propan-2-yl)-2, 3-dihydrofuro(3, 2-g)chromen-5-one (artocarpfuranol, 1), together with 14 known compounds, dihydromorin (2), steppogenin (3), norartocarpetin (4), artocarpanone (5), artocarpesin (6), artocarpin (7), cycloartocarpin (8), cycloartocarpesin (9), artocarpetin (10), brosimone I (11), cudraflavone B (12), carpachromene (13), isoartocarpesin (14), and cyanomaclurin (15) were isolated from the wood of Artocarpus heterophyllus. Their structures were identified by interpretation of MS,( 1)H-NMR,( 13)C-NMR, HMQC, and HMBC spectroscopic data. Among them, compounds 1-6 and 14 showed strong mushroom tyrosinase inhibitory activity with IC(50) values lower than 50 microM, more potent than kojic acid (IC(50) = 71.6 microM), a well-known tyrosinase inhibitor. In addition, extract of A. heterophyllus was evaluated for its antibrowning effect on fresh-cut apple slices. It was discovered that fresh-cut apple slices treated by dipping in solution of 0.03 or 0.05% of A. heterophyllus extract with 0.5% ascorbic acid did not undergo any substantial browning reaction after storage at room temperature for 24 h. The antibrowning effect was significantly better than samples treated with the extract (0.03 or 0.05%) or ascorbic acid (0.5%) alone. The results provide preliminary evidence supporting the potential of this natural extract as antibrowning agent in food systems. PMID:18683821

  2. Artocarpus heterophyllus L. seed starch-blended gellan gum mucoadhesive beads of metformin HCl.

    PubMed

    Nayak, Amit Kumar; Pal, Dilipkumar; Santra, Kousik

    2014-04-01

    Jackfruit (Artocarpus heterophyllus Lam., family: Moraceae) seed starch (JFSS)-gellan gum (GG) mucoadhesive beads containing metformin HCl were developed through ionotropic gelation technique. The effect of GG to JFSS ratio and CaCl2 concentration on the drug encapsulation efficiency (DEE, %) and cumulative drug release at 10h (R10h, %) was optimized and analyzed using response surface methodology based on 3(2) factorial design. The optimized JFSS-GG beads containing metformin HCl showed DEE of 92.67±4.46%, R10h of 61.30±2.37%, and mean diameter of 1.67±0.27 mm. The optimized beads showed pH-dependent swelling and mucoadhesivity with the goat intestinal mucosa. The in vitro drug release from all these JFSS-GG beads containing metformin HCl was followed zero-order pattern (R(2)=0.9907-0.9975) with super case-II transport mechanism over a period of 10 h. The beads were also characterized by SEM and FTIR. The optimized JFSS-GG beads containing metformin HCl exhibited significant hypoglycemic effect in alloxan-induced diabetic rats over prolonged period after oral administration. PMID:24447799

  3. Artocarpus gomezianus aided green synthesis of ZnO nanoparticles: Luminescence, photocatalytic and antioxidant properties

    NASA Astrophysics Data System (ADS)

    Suresh, D.; Shobharani, R. M.; Nethravathi, P. C.; Pavan Kumar, M. A.; Nagabhushana, H.; Sharma, S. C.

    2015-04-01

    We report green synthesis of multifunctional ZnO nanoparticles (NPs) using Artocarpus gomezianus (AG) extract as fuel by solution combustion synthesis. The formation of NPs was confirmed by powder XRD, SEM, TEM and UV-Visible studies. The NPs were subjected for photoluminescence, photodegradative and antioxidant studies. XRD data reveals that the ZnO NPs possess wurtzite structure. UV-Visible spectrum shows absorbance maximum at 370 nm which corresponds to the energy band gap of 3.3 eV. Morphology studies indicate the highly porous nature of the NPs. PL spectra of NPs found to display very interesting blue, green and red emissions upon excitation at 325 nm. The NPs exhibit potential photocatalytic activity towards the degradation of methylene blue (MB) dye upon exposure to sun light and UV light. ZnO NPs found to have considerable antioxidant activity against DPPH (2,2-diphenyl-1-picrylhydrazyl) free radicals. The study successfully demonstrates a simple and eco-friendly method for the synthesis of efficient multifunctional ZnO nanoparticles using green synthetic approach.

  4. A novel serine protease with human fibrino(geno)lytic activities from Artocarpus heterophyllus latex.

    PubMed

    Siritapetawee, Jaruwan; Thumanu, Kanjana; Sojikul, Punchapat; Thammasirirak, Sompong

    2012-07-01

    A protease was isolated and purified from Artocarpus heterophyllus (jackfruit) latex and designated as a 48-kDa antimicrobial protease (AMP48) in a previous publication. In this work, the enzyme was characterized for more biochemical and medicinal properties. Enzyme activity of AMP48 was strongly inhibited by phenylmethanesulfonyl fluoride and soybean trypsin inhibitor, indicating that the enzyme was a plant serine protease. The N-terminal amino acid sequences (A-Q-E-G-G-K-D-D-D-G-G) of AMP48 had no sequence similarity matches with any sequence databases of BLAST search and other plant serine protease. The secondary structure of this enzyme was composed of high α-helix (51%) and low β-sheet (9%). AMP48 had fibrinogenolytic activity with maximal activity between 55 and 60°C at pH 8. The enzyme efficiently hydrolyzed α followed by partially hydrolyzed β and γ subunits of human fibrinogen. In addition, the fibrinolytic activity was observed through the degradation products by SDS-PAGE and emphasized its activity by monitoring the alteration of secondary structure of fibrin clot after enzyme digestion using ATR-FTIR spectroscopy. This study presented the potential role to use AMP48 as antithrombotic for treatment thromboembolic disorders such as strokes, pulmonary emboli and deep vein thrombosis. PMID:22579962

  5. Cytotoxic effects of new geranyl chalcone derivatives isolated from the leaves of Artocarpus communis in SW 872 human liposarcoma cells.

    PubMed

    Fang, Song-Chwan; Hsu, Chin-Lin; Yu, Yu-Shen; Yen, Gow-Chin

    2008-10-01

    Breadfruit (Artocarpus communis Moraceae) is cultivated in tropical and subtropical regions as a traditional starch crop and also has potential medicinal properties. The aim of this work was to study the in vitro anticancer activity of compounds isolated from the leaves of Artocarpus communis. Three new geranyl chalcone derivatives including isolespeol (1), 5'-geranyl-2',4',4-trihydroxychalcone (2), and 3,4,2',4'-tetrahydroxy-3'-geranyldihydrochalcone (3), together with two known compounds lespeol (4) and xanthoangelol (5), were isolated from the leaves of Artocarpus communis. The structures of 1- 5 were elucidated by spectroscopy and through comparison with data reported in the literature. The effects of geranyl chalcone derivatives (1- 5) on the viability of human cancer cells (including SW 872, HT-29, COLO 205, Hep3B, PLC5, Huh7, and HepG2 cells) were investigated. The results indicate that isolespeol (1) showed the highest inhibitory activity with an IC 50 value of 3.8 muM in SW 872 human liposarcoma cells. Treatment of SW 872 human liposarcoma cells with isolespeol (1) caused the loss of mitochondrial membrane potential (DeltaPsim). Western blotting revealed that isolespeol (1) stimulated increased protein expression of Fas, FasL, and p53. The expression ratios of pro- and antiapoptotic Bcl-2 family members were also changed by isolespeol (1) treatment to subsequently induce the activation of caspase-9 and caspase-3, which was followed by cleavage of poly (ADP-ribose) polymerase (PARP). These results demonstrate that isolespeol (1) induces apoptosis in SW 872 cells through Fas- and mitochondria-mediated pathways. PMID:18767861

  6. Breadfruit (Artocarpus altilis): a source of high-quality protein for food security and novel food products.

    PubMed

    Liu, Ying; Ragone, Diane; Murch, Susan J

    2015-04-01

    Protein deficiency has been observed as a leading cause of malnutrition and child death in the tropics. The current study evaluated the protein quality of 49 important breadfruit cultivars (41 Artocarpus altilis and 8 hybrids of A. altilis × A. mariannensis). While significant differences were found between cultivars, all varieties contained a full spectrum of the essential amino acids and are especially rich in phenylalanine, leucine, isoleucine, and valine. The cultivar Ma'afala contained significantly higher total essential amino acid content than other varieties and higher-quality protein than staples such as corn, wheat, rice, soybean, potato, and pea. PMID:25588988

  7. Tissue staining properties of lectins from the seeds of the jack fruit (Artocarpus integrifolia) and the winged bean (Psophocarpus tetragonolobus).

    PubMed

    Vijayakumar, T; Robertson, D; McIntosh, D; Forrester, J A

    1987-01-01

    N-acetyl-D-galactosamine binding lectins from winged bean (Psophocarpus tetragonolobus) and jack fruit (Artocarpus integrifolia) were isolated, purified and conjugated with horse radish peroxidase and their tissue staining properties studied. Despite having an apparently common inhibiting sugar, the lectins showed differences in their staining properties. The lectin from the winged bean stained none of the mouse and human tissues tried even after neuraminidase treatment whereas the jack fruit lectin stained most of the untreated cells. The staining was found to be improved by the prior treatment of the cells with neuraminidase and inhibited completely by the inhibiting sugar. The differences in the staining properties of the lectins are discussed. PMID:2452865

  8. Breadfruit (Artocarpus altilis) gibberellin 2-oxidase genes in stem elongation and abiotic stress response.

    PubMed

    Zhou, Yuchan; Underhill, Steven J R

    2016-01-01

    Breadfruit (Artocarpus altilis) is a traditional staple tree crop in the Oceania. Susceptibility to windstorm damage is a primary constraint on breadfruit cultivation. Significant tree loss due to intense tropical windstorm in the past decades has driven a widespread interest in developing breadfruit with dwarf stature. Gibberellin (GA) is one of the most important determinants of plant height. GA 2-oxidase is a key enzyme regulating the flux of GA through deactivating biologically active GAs in plants. As a first step toward understanding the molecular mechanism of growth regulation in the species, we isolated a cohort of four full-length GA2-oxidase cDNAs, AaGA2ox1- AaGA2ox4 from breadfruit. Sequence analysis indicated the deduced proteins encoded by these AaGA2oxs clustered together under the C19 GA2ox group. Transcripts of AaGA2ox1, AaGA2ox2 and AaGA2ox3 were detected in all plant organs, but exhibited highest level in source leaves and stems. In contrast, transcript of AaGA2ox4 was predominantly expressed in roots and flowers, and displayed very low expression in leaves and stems. AaGA2ox1, AaGA2ox2 and AaGA2ox3, but not AaGA2ox4 were subjected to GA feedback regulation where application of exogenous GA3 or gibberellin biosynthesis inhibitor, paclobutrazol was shown to manipulate the first internode elongation of breadfruit. Treatments of drought or high salinity increased the expression of AaGA2ox1, AaGA2ox2 and AaGA2ox4. But AaGA2ox3 was down-regulated under salt stress. The function of AaGA2oxs is discussed with particular reference to their role in stem elongation and involvement in abiotic stress response in breadfruit. PMID:26646240

  9. Purification and characterization of a trypsin inhibitor from the seeds of Artocarpus heterophyllus Lam.

    PubMed

    Lyu, Junchen; Liu, Yuan; An, Tianchen; Liu, Yujun; Wang, Manchuriga; Song, Yanting; Zheng, Feifei; Wu, Dan; Zhang, Yingxia; Deng, Shiming

    2015-05-01

    A proteinaceous inhibitor against trypsin was isolated from the seeds of Artocarpus heterophyllus Lam. by successive ammonium sulfate precipitation, ion-exchange, and gel-filtration chromatography. The trypsin inhibitor, named as AHLTI (A. heterophyllus Lam. trypsin inhibitor), consisted of a single polypeptide chain with a molecular weight of 28.5 kDa, which was confirmed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and gel-filtration chromatography. The N-terminal sequence of AHLTI was DEPPSELDAS, which showed no similarity to other known trypsin inhibitor sequence. AHLTI completely inhibited bovine trypsin at a molar ratio of 1:2 (AHLTI:trypsin) analyzed by native polyacrylamide gel electrophoresis, inhibition activity assay, and gel-filtration chromatography. Moreover, kinetic enzymatic studies were carried out to understand the inhibition mechanism of AHLTI against trypsin. Results showed that AHLTI was a competitive inhibitor with an equilibrium dissociation constant (Ki) of 3.7 × 10(-8) M. However, AHLTI showed weak inhibitory activity toward chymotrypsin and elastase. AHLTI was stable over a broad range of pH 4-8 and temperature 20-80°C. The reduction agent, dithiothreitol, had no obvious effect on AHLTI. The trypsin inhibition assays of AHLTI toward digestive enzymes from insect pest guts in vitro demonstrated that AHLTI was effective against enzymes from Locusta migratoria manilensis (Meyen). These results suggested that AHLTI might be a novel trypsin inhibitor from A. heterophyllus Lam. belonging to Kunitz family, and play an important role in protecting from insect pest. PMID:25851516

  10. Screening of selected biological activities of artocarpus lakoocha roxb (moraceae) fruit pericarp.

    PubMed

    Shailendra Kumar, M B; Rakesh Kumar, M C; Bharath, A C; Vinod Kumar, H R; Prashith Kekuda, T R; Nandini, K C; Rakshitha, M N; Raghavendra, H L

    2010-09-01

    Artocarpus lakoocha Roxb (Moraceae) is cultivated in Uttar Pradesh, Bengal, Khasi Hills and Western Ghats. Objectives of the present study were to determine antibacterial, antioxidant, anthelmintic and insecticidal efficacy of methanol extract of A. lakoocha fruit pericarp. Antibacterial activity was tested against by Agar well diffusion method. Antioxidant activity in terms of free radical scavenging ability was determined by DPPH free radical scavenging assay. Anthelmintic efficacy was determined using adult Indian earthworm. Insecticidal activity was tested against second and third instar larvae of Aedes aegypti. The extract has shown dose dependent antibacterial, antioxidant, anthelmintic and insecticidal activity. Among bacteria, S. aureus has shown more susceptibility than K. pneumoniae and P. aeruginosa. The extract exhibited marked antioxidant activity by scavenging DPPH free radical. The IC50 value for extract was found to be 49.42μg/ml. The extract exhibited marked anthelmintic activity by causing paralysis and death of worms and the effect was found to be dose dependent. The extract concentration 100mg/ml has shown marked anthelmintic effect than standard drug. In insecticidal study, the 2(nd) instar larvae were shown to be more susceptible than 3(rd) instar larvae. Phytochemical analysis revealed the presence of tannins and alkaloids. The presence of these phytoconstituents might be responsible for the biological activities of extract tested. The extract could be used to treat free radical damage, bacterial and helmintic infections and to control insect vectors. Further studies on isolation of constituents and their bio-efficacies in vitro and in vivo are under investigation. PMID:24825993

  11. SCREENING OF SELECTED BIOLOGICAL ACTIVITIES OF ARTOCARPUS LAKOOCHA ROXB (MORACEAE) FRUIT PERICARP

    PubMed Central

    Shailendra Kumar, M. B.; Rakesh Kumar, M. C.; Bharath, A. C.; Vinod Kumar, H. R.; Prashith Kekuda, T. R.; Nandini, K. C.; Rakshitha, M. N.; Raghavendra, H. L.

    2010-01-01

    Artocarpus lakoocha Roxb (Moraceae) is cultivated in Uttar Pradesh, Bengal, Khasi Hills and Western Ghats. Objectives of the present study were to determine antibacterial, antioxidant, anthelmintic and insecticidal efficacy of methanol extract of A. lakoocha fruit pericarp. Antibacterial activity was tested against by Agar well diffusion method. Antioxidant activity in terms of free radical scavenging ability was determined by DPPH free radical scavenging assay. Anthelmintic efficacy was determined using adult Indian earthworm. Insecticidal activity was tested against second and third instar larvae of Aedes aegypti. The extract has shown dose dependent antibacterial, antioxidant, anthelmintic and insecticidal activity. Among bacteria, S. aureus has shown more susceptibility than K. pneumoniae and P. aeruginosa. The extract exhibited marked antioxidant activity by scavenging DPPH free radical. The IC50 value for extract was found to be 49.42μg/ml. The extract exhibited marked anthelmintic activity by causing paralysis and death of worms and the effect was found to be dose dependent. The extract concentration 100mg/ml has shown marked anthelmintic effect than standard drug. In insecticidal study, the 2nd instar larvae were shown to be more susceptible than 3rd instar larvae. Phytochemical analysis revealed the presence of tannins and alkaloids. The presence of these phytoconstituents might be responsible for the biological activities of extract tested. The extract could be used to treat free radical damage, bacterial and helmintic infections and to control insect vectors. Further studies on isolation of constituents and their bio-efficacies in vitro and in vivo are under investigation. PMID:24825993

  12. 49 CFR 230.69 - Ash pans.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 49 Transportation 4 2010-10-01 2010-10-01 false Ash pans. 230.69 Section 230.69 Transportation... TRANSPORTATION STEAM LOCOMOTIVE INSPECTION AND MAINTENANCE STANDARDS Steam Locomotives and Tenders Ash Pans § 230.69 Ash pans. Ash pans shall be securely supported from mud-rings or frames with no part less than...

  13. 49 CFR 230.69 - Ash pans.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 49 Transportation 4 2014-10-01 2014-10-01 false Ash pans. 230.69 Section 230.69 Transportation... TRANSPORTATION STEAM LOCOMOTIVE INSPECTION AND MAINTENANCE STANDARDS Steam Locomotives and Tenders Ash Pans § 230.69 Ash pans. Ash pans shall be securely supported from mud-rings or frames with no part less than...

  14. 49 CFR 230.69 - Ash pans.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 49 Transportation 4 2012-10-01 2012-10-01 false Ash pans. 230.69 Section 230.69 Transportation... TRANSPORTATION STEAM LOCOMOTIVE INSPECTION AND MAINTENANCE STANDARDS Steam Locomotives and Tenders Ash Pans § 230.69 Ash pans. Ash pans shall be securely supported from mud-rings or frames with no part less than...

  15. 49 CFR 230.69 - Ash pans.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 49 Transportation 4 2011-10-01 2011-10-01 false Ash pans. 230.69 Section 230.69 Transportation... TRANSPORTATION STEAM LOCOMOTIVE INSPECTION AND MAINTENANCE STANDARDS Steam Locomotives and Tenders Ash Pans § 230.69 Ash pans. Ash pans shall be securely supported from mud-rings or frames with no part less than...

  16. 49 CFR 230.69 - Ash pans.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 49 Transportation 4 2013-10-01 2013-10-01 false Ash pans. 230.69 Section 230.69 Transportation... TRANSPORTATION STEAM LOCOMOTIVE INSPECTION AND MAINTENANCE STANDARDS Steam Locomotives and Tenders Ash Pans § 230.69 Ash pans. Ash pans shall be securely supported from mud-rings or frames with no part less than...

  17. Chryseobacterium artocarpi sp. nov., isolated from the rhizosphere soil of Artocarpus integer.

    PubMed

    Venil, Chidambaram Kulandaisamy; Nordin, Nordiana; Zakaria, Zainul Akmar; Ahmad, Wan Azlina

    2014-09-01

    A bacterial strain, designated UTM-3(T), isolated from the rhizosphere soil of Artocarpus integer (cempedak) in Malaysia was studied to determine its taxonomic position. Cells were Gram-stain-negative, non-spore-forming rods, devoid of flagella and gliding motility, that formed yellow-pigmented colonies on nutrient agar and contained MK-6 as the predominant menaquinone. Comparative analysis of the 16S rRNA gene sequence of strain UTM-3(T) with those of the most closely related species showed that the strain constituted a distinct phyletic line within the genus Chryseobacterium with the highest sequence similarities to Chryseobacterium lactis NCTC 11390(T), Chryseobacterium viscerum 687B-08(T), Chryseobacterium tructae 1084-08(T), Chryseobacterium arthrosphaerae CC-VM-7(T), Chryseobacterium oncorhynchi 701B-08(T), Chryseobacterium vietnamense GIMN1.005(T), Chryseobacterium bernardetii NCTC 13530(T), Chryseobacterium nakagawai NCTC 13529(T), Chryseobacterium gallinarum LMG 27808(T), Chryseobacterium culicis R4-1A(T), Chryseobacterium flavum CW-E2(T), Chryseobacterium aquifrigidense CW9(T), Chryseobacterium ureilyticum CCUG 52546(T), Chryseobacterium indologenes NBRC 14944(T), Chryseobacterium gleum CCUG 14555(T), Chryseobacterium jejuense JS17-8(T), Chryseobacterium oranimense H8(T) and Chryseobacterium joostei LMG 18212(T). The major whole-cell fatty acids were iso-C15 : 0 and iso-C17 : 1ω9c, followed by summed feature 4 (iso-C15 : 0 2-OH and/or C16 : 1ω7t) and iso-C17 : 0 3-OH, and the polar lipid profile consisted of phosphatidylethanolamine and several unknown lipids. The DNA G+C content strain UTM-3(T) was 34.8 mol%. On the basis of the phenotypic and phylogenetic evidence, it is concluded that the isolate represents a novel species of the genus Chryseobacterium, for which the name Chryseobacterium artocarpi sp. nov. is proposed. The type strain is UTM-3(T) ( = CECT 8497(T) = KCTC 32509(T)). PMID:24958763

  18. Hyperglycaemic effect of Artocarpus communis Forst (Moraceae) root bark aqueous extract in Wistar rats.

    PubMed

    Adewole, S O; Ojewole, J O

    2007-01-01

    Decoctions and infusions of Artocarpus communis (Forst) (family: Moraceae) root bark are traditionally used among the Yoruba-speaking people of western Nigeria as folk remedies for the management, control and treatment of an array of human diseases, including type 2 diabetes mellitus. Although numerous bioactive prenylflavonoids have been isolated from the roots, stem bark and leaves of A communis, to the best of our knowledge, the effects of the plant's root bark extract on animal models of diabetes mellitus have hitherto not been reported in the biomedical literature. In our pilot study, we observed that A communis root bark aqueous extract (ACE) raised blood glucose concentrations in rats. In view of this finding, the present study was undertaken to investigate the glycaemic effect of ACE in comparison with that of streptozotocin (STZ) in Wistar rats. Four groups (A, B, C and D) of Wistar rats, each group consisting of 10 rats, were used in this study. Group A rats received distilled water in quantities equivalent to the volume of ACE administered. Diabetes mellitus was induced in the animals in groups B and C by intraperitoneal (ip) injections of STZ (75 mg/kg body weight). The rats in group C were additionally treated with ACE (50 mg/kg body weight ip) from the third to the tenth day following STZ treatment. Group D rats received ACE (12.5-100 mg/kg body weight ip) only. The effects of ACE were compared with those of STZ on blood glucose concentrations, serum and pancreatic insulin levels, hepatic hexokinase (HXK) and glucokinase (GCK) activities, and hepatic glycogen contents in the experimental animal paradigm used. The rats in treated groups B, C and D exhibited pronounced polyuria, hypo-insulinaemia and hyperglycaemia. Group D rats developed significant hyperglycaemia (p < 0.05) immediately after ACE administration, whereas groups B and C rats became hyperglycaemic 24 to 72 hours post STZ and STZ + ACE treatments, when compared with the control group A

  19. New development and validation of 50 SSR markers in breadfruit (Artocarpus altilis, Moraceae) by next-generation sequencing1

    PubMed Central

    De Bellis, Fabien; Malapa, Roger; Kagy, Valérie; Lebegin, Stéphane; Billot, Claire; Labouisse, Jean-Pierre

    2016-01-01

    Premise of the study: Using next-generation sequencing technology, new microsatellite loci were characterized in Artocarpus altilis (Moraceae) and two congeners to increase the number of available markers for genotyping breadfruit cultivars. Methods and Results: A total of 47,607 simple sequence repeat loci were obtained by sequencing a library of breadfruit genomic DNA with an Illumina MiSeq system. Among them, 50 single-locus markers were selected and assessed using 41 samples (39 A. altilis, one A. camansi, and one A. heterophyllus). All loci were polymorphic in A. altilis, 44 in A. camansi, and 21 in A. heterophyllus. The number of alleles per locus ranged from two to 19. Conclusions: The new markers will be useful for assessing the identity and genetic diversity of breadfruit cultivars on a small geographical scale, gaining a better understanding of farmer management practices, and will help to optimize breadfruit genebank management. PMID:27610273

  20. Isolation and identification of mosquito (Aedes aegypti ) biting deterrent fatty acids from male inflorescences of breadfruit (Artocarpus altilis (Parkinson) Fosberg).

    PubMed

    Jones, A Maxwell P; Klun, Jerome A; Cantrell, Charles L; Ragone, Diane; Chauhan, Kamlesh R; Brown, Paula N; Murch, Susan J

    2012-04-18

    Dried male inflorescences of breadfruit ( Artocarpus altilis , Moraceae) are burned in communities throughout Oceania to repel flying insects, including mosquitoes. This study was conducted to identify chemicals responsible for mosquito deterrence. Various crude extracts were evaluated, and the most active, the hydrodistillate, was used for bioassay-guided fractionation. The hydrodistillate and all fractions displayed significant deterrent activity. Exploratory GC-MS analysis revealed more than 100 distinctive peaks, and more than 30 compounds were putatively identified, including a mixture of terpenes, aldehydes, fatty acids, and aromatics. A systematic bioassay-directed study using adult Aedes aegypti females identified capric, undecanoic, and lauric acid as primary deterrent constituents. A synthetic mixture of fatty acids present in the most active fraction and individual fatty acids were all significantly more active than N,N-diethyl-m-toluamide (DEET). These results provide support for this traditional practice and indicate the potential of male breadfruit flowers and fatty acids as mosquito repellents. PMID:22420541

  1. Green synthesis of gold nanoparticles using extracts of Artocarpus Lakoocha fruit and its leaves, and Eriobotrya Japonica leaves

    NASA Astrophysics Data System (ADS)

    Sharma, Ankita; Dhiman, Naresh; Singh, Bhanu P.; Gathania, Arvind K.

    2014-04-01

    Gold nanoparticles (AuNPs) synthesis is demonstrated successfully using fresh young leaves of Artocarpus Lakoocha (A. Lakoocha), fruit pulp of A. Lakoocha and loquat (Eriobotrya Japonica) leaves. We have also compared green synthesis with chemical assisted tri-n-octyl-phosphine (TOP) stabilized gold nanoparticles. Samples were characterized with transmission electron microscopy (TEM), Fourier transform infrared spectroscopy and UV-Visible spectroscopy. TEM images have shown that the average size of the particles is 15.06, 36.8 and 25.08 nm for A. Lakoocha fruits, A. Lakoocha leaves and loquat leaves assisted gold nanoparticles, respectively. Hydrogen tetrachloroaurate is reduced and AuNPs are stabilized by phenols, hydroxyls and carboxyls groups such as terpenoids, flavonoids, tannins etc, present in young leaves and fruit extracts. It was observed that green synthesis using botanical extracts is a cost effective and non- toxic way for nanoparticle preparation.

  2. PanSNPdb: The Pan-Asian SNP Genotyping Database

    PubMed Central

    Ngamphiw, Chumpol; Assawamakin, Anunchai; Xu, Shuhua; Shaw, Philip J.; Yang, Jin Ok; Ghang, Ho; Bhak, Jong; Liu, Edison; Tongsima, Sissades

    2011-01-01

    The HUGO Pan-Asian SNP consortium conducted the largest survey to date of human genetic diversity among Asians by sampling 1,719 unrelated individuals among 71 populations from China, India, Indonesia, Japan, Malaysia, the Philippines, Singapore, South Korea, Taiwan, and Thailand. We have constructed a database (PanSNPdb), which contains these data and various new analyses of them. PanSNPdb is a research resource in the analysis of the population structure of Asian peoples, including linkage disequilibrium patterns, haplotype distributions, and copy number variations. Furthermore, PanSNPdb provides an interactive comparison with other SNP and CNV databases, including HapMap3, JSNP, dbSNP and DGV and thus provides a comprehensive resource of human genetic diversity. The information is accessible via a widely accepted graphical interface used in many genetic variation databases. Unrestricted access to PanSNPdb and any associated files is available at: http://www4a.biotec.or.th/PASNP. PMID:21731755

  3. Hard-pan soils - Management

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Hard pans, hard layers, or compacted horizons, either surface or subsurface, are universal problems that limit crop production. Hard layers can be caused by traffic or soil genetic properties that result in horizons with high density or cemented soil particles; these horizons have elevated penetrati...

  4. The Pan-STARRS Surveys

    NASA Astrophysics Data System (ADS)

    Carter Chambers, Kenneth

    2015-08-01

    The 4 year Pan-STARRS1 Science Mission has now completed and the data will be publicly release by the time of the IAU Assembly. The full data set, including catalogs (100TB database), images (2PB), and metadata, will be available from the STScI MAST archive. The Pan-STARRS1 Surveys include: (1) The 3pi Steradian Survey, (2) The Medium Deep survey of 10 PS1 footprints (7 sq deg each) spaced around the sky; (3) A solar system survey of the ecliptic optimized for the discovery of Near Earth Objects, (4) a Stellar Transit Survey in the galactic bulge; and (5) a time domain Survey of M31.The characteristics of the Pan-STARRS Surveys will be presented, including image quality, depth, cadence, and coverage. Science results span most fields of astronomy from Near Earth Objects to cosmology.The 2nd mission, the Pan-STARRS NEO Survey, is currently underway on PS1 and it will be supplemented by PS2 as it becomes fully operational. PS2 is currently undergoing commissioning and is expected to begin full time science observations with an functional capability similar to PS1 by summer of 2015. The status of PS2 and commissioning data from PS2 will be presented along with a full description of the Pan-STARRS NEO Survey. The prospects for future (beyond 2017) wide field surveys in the Northern Hemisphere will also be discussed.The Pan-STARRS1 Surveys have been made possible through contributions of the Institute for Astronomy of the University of Hawaii; the Pan-STARRS Project Office; the Max-Planck Society and its participating institutes: the Max Planck Institute for Astronomy, Heidelberg and the Max Planck Institute for Extraterrestrial Physics, Garching; The Johns Hopkins University; Durham University; the University of Edinburgh; Queen's University Belfast; the Harvard-Smithsonian Center for Astrophysics, the Las Cumbres Observatory Global Telescope Network Incorporated; the National Central University of Taiwan; the Space Telescope Science Institute; the National Aeronautics

  5. The Pan-STARRS Surveys

    NASA Astrophysics Data System (ADS)

    Chambers, Kenneth C.; Pan-STARRS Team

    2016-01-01

    The 4 year Pan-STARRS1 Science Mission has now completed and the final data processing and database ingest is underway. We expect to have the public release of the PS1 Survey data at approximately the time of the AAS Meeting. The full data set, including catalogs (150 Terabyte database), images (2 Petabytes), and metadata, will be available from the STScI MASTarchive. The Pan-STARRS1 Surveys include: (1) The 3pi Steradian Survey, (2) The Medium Deep survey of 10 PS1 footprints (7 sq deg each) spaced around the sky; (3) A solar system survey of the ecliptic optimized for the discovery of Near Earth Objects, (4) a Stellar Transit Survey in the galactic bulge; and (5) a time domain Survey of M31. The characteristics of the Pan-STARRS1 Surveys will be presented, including image quality, depth, cadence, and coverage. Science results span most fields of astronomy from Near Earth Objects to cosmology. The 2nd mission, the Pan-STARRS NEO Survey, is currently underway on PS1 and it will be supplemented by PS2 observations as PS2 becomes fully operational. We will also report on the status of PS2 and the prospects for future wide field surveys in the Northern Hemisphere. The Pan-STARRS1 Surveys have been made possible through contributions of the Institute for Astronomy of the University of Hawaii; the Pan-STARRS Project Office; the Max-Planck Society and its participating institutes: the Max Planck Institute for Astronomy, Heidelberg and the Max Planck Institute for Extraterrestrial Physics, Garching; The Johns Hopkins University; Durham University; the University of Edinburgh; Queen's University Belfast; the Harvard-Smithsonian Center for Astrophysics, the Las Cumbres Observatory Global Telescope Network Incorporated; the National Central University of Taiwan; the Space Telescope Science Institute; the National Aeronautics and Space Administration under Grant No. NNX08AR22G issued through the Planetary Science Division of the NASA Science Mission Directorate; the National

  6. Artocarpus altilis (Parkinson) Fosberg Extracts and Geranyl Dihydrochalcone Inhibit STAT3 Activity in Prostate Cancer DU145 Cells.

    PubMed

    Jeon, Yoon Jung; Jung, Seung-Nam; Chang, Hyeyoun; Yun, Jieun; Lee, Chang Woo; Lee, Joonku; Choi, Sangho; Nash, Oyekanmi; Han, Dong Cho; Kwon, Byoung-Mog

    2015-05-01

    Artocarpus altilis (Parkinson) Fosberg has traditionally been used in Indonesia for the treatment of liver cirrhosis, hypertension, and diabetes. In many other countries, it is used for the treatment of malaria, yellow fever, and dengue fever. It has been reported that A. altilis extracts have antiatherosclerotic and cytoprotective effects, but its molecular targets in tumor cells are not yet fully understood. The A. altilis extracts and the partially purified fraction have been shown to inhibit STAT3 activity and the phosphorylation of STAT3 in a dose-dependent manner. To identify the active components, a bioassay-guided isolation of the partially purified fraction resulted in the identification of a geranyl dihydrochalcone, CG901. Its chemical structure was established on the basis of spectroscopic evidence and comparison with published data. The partially purified fraction and the isolated a geranyl dihydrochalcone, CG901, down-regulated the expression of STAT3 target genes, induced apoptosis in DU145 prostate cancer cells via caspase-3 and PARP degradation, and inhibited tumor growth in human prostate tumor (DU145) xenograft initiation model. These results suggest that A. altilis could be a good natural source and that the isolated compound will be a potential lead molecule for developing novel therapeutics against STAT3-related diseases, including cancer and inflammation. PMID:25682949

  7. Protective effects of Artocarpus altilis (Moraceae) on cadmium-induced changes in sperm characteristics and testicular oxidative damage in rats.

    PubMed

    Adaramoye, O A; Akanni, O O

    2016-03-01

    Cadmium (Cd) is a major environmental toxicant and an endocrine disruptor. We investigated the protective effects of methanol extract of Artocarpus altilis (AA) against Cd-induced testicular damage in rats while quercetin (Que) served as standard. The total flavonoids and phenolic contents (TFC and TPC), 2, 2-diphenyl-1-picrylhydrazyl (DPPH) and hydroxyl (OH) radicals scavenging activities of AA were determined. In vivo, thirty male Wistar rats were assigned to six groups and orally treated with corn oil (control), Cd alone, Cd+Que, Cd+AA, Que and AA alone. Que and AA were given at doses of 25 and 200 mg kg(-1), respectively, for 3 weeks and challenged with two doses of Cd (1.5 mg kg(-1)). Results showed that TFC and TPC of AA increased with increase in concentration. AA scavenged DPPH and OH radicals in a dose-dependent manner. Administration of Cd significantly increased the relative weight of testis of rats. Lipid peroxidation was significantly increased while antioxidant parameters decreased in testis of Cd-treated rats. Also, Cd-treated rats had significantly reduced sperm count, motility, sialic acid, luteinising hormone and testosterone relative to controls. Pre-treatment with AA or Que significantly attenuated the biochemical alterations observed in Cd-treated rats. Overall, AA protects against Cd-induced testicular damage via antioxidative mechanism. PMID:25912632

  8. Antioxidant Potential of Lingzhi or Reishi Medicinal Mushroom, Ganoderma lucidum (Higher Basidiomycetes) Cultivated on Artocarpus heterophyllus Sawdust Substrate in India.

    PubMed

    Rani, P; Lal, Merlin Rajesh; Maheshwari, Uma; Krishnan, Sreeram

    2015-01-01

    The artificial cultivation of Ganoderma lucidum (MTCC1039) using Artocarpus heterophyllus as sawdust substrate was optimized and free radical scavenging activities of the generated fruiting bodies were investigated. The choice of A. heterophyllus as substrate was due to its easy availability in South India. Sawdust supplemented with dextrose medium yielded better spawn hyphae and early fruiting body initiation (15 days). The biological yield obtained was 42.06 ± 2.14 g/packet and the biological efficiency was 8.41 ± 0.48%. Both aqueous and methanolic extracts of fruiting body were analyzed for radical scavenging activity. Methanolic extract showed maximum scavenging activity for 1,1-diphenyl-2-picrylhydrazyl (IC50 = 290 μg/ml) and 2,2'-azino-bis(3-ethylbenzothiazoline- 6-sulphonic acid (IC50 = 580 μg/ml), whereas aqueous extract had better scavenging for ferric reducing antioxidant power (IC50 = 5 μg/ml). Total phenolic content and total antioxidant capacity were significantly higher in methanolic extract (p < 0.01). A positive correlation existed between the phenolic content and antioxidant activity. Our results indicated that fruiting bodies of G. lucidum cultivated in sawdust medium possess antioxidant property, which can be exploited for therapeutic application. PMID:26854104

  9. In vitro conservation and sustained production of breadfruit ( Artocarpus altilis, Moraceae): modern technologies for a traditional tropical crop

    NASA Astrophysics Data System (ADS)

    Murch, Susan J.; Ragone, Diane; Shi, Wendy Lei; Alan, Ali R.; Saxena, Praveen K.

    2008-02-01

    Breadfruit ( Artocarpus altilis, Moraceae) is a traditionally cultivated, high-energy, high-yield crop, but widespread use of the plant for food is limited by poor quality and poor storage properties of the fruit. A unique field genebank of breadfruit species and cultivars exists at the National Tropical Botanical Garden in the Hawaiian Islands and is an important global resource for conservation and sustainable use of breadfruit. However, this plant collection could be damaged by a random natural disaster such as a hurricane. We have developed a highly efficient in vitro plant propagation system to maintain, conserve, mass propagate, and distribute elite varieties of this important tree species. Mature axillary shoot buds were collected from three different cultivars of breadfruit and proliferated using a cytokinin-supplemented medium. The multiple shoots were maintained as stock cultures and repeatedly used to develop whole plants after root differentiation on a basal or an auxin-containing medium. The plantlets were successfully grown under greenhouse conditions and were reused to initiate additional shoot cultures for sustained production of plants. Flow cytometry was used to determine the nuclear deoxyribonucleic acid content and the ploidy status of the in vitro grown population. The efficacy of the micropropagation protocols developed in this study represents a significant advancement in the conservation and sustained mass propagation of breadfruit germplasm in a controlled environment free from contamination.

  10. In vitro conservation and sustained production of breadfruit (Artocarpus altilis, Moraceae): modern technologies for a traditional tropical crop.

    PubMed

    Murch, Susan J; Ragone, Diane; Shi, Wendy Lei; Alan, Ali R; Saxena, Praveen K

    2008-02-01

    Breadfruit (Artocarpus altilis, Moraceae) is a traditionally cultivated, high-energy, high-yield crop, but widespread use of the plant for food is limited by poor quality and poor storage properties of the fruit. A unique field genebank of breadfruit species and cultivars exists at the National Tropical Botanical Garden in the Hawaiian Islands and is an important global resource for conservation and sustainable use of breadfruit. However, this plant collection could be damaged by a random natural disaster such as a hurricane. We have developed a highly efficient in vitro plant propagation system to maintain, conserve, mass propagate, and distribute elite varieties of this important tree species. Mature axillary shoot buds were collected from three different cultivars of breadfruit and proliferated using a cytokinin-supplemented medium. The multiple shoots were maintained as stock cultures and repeatedly used to develop whole plants after root differentiation on a basal or an auxin-containing medium. The plantlets were successfully grown under greenhouse conditions and were reused to initiate additional shoot cultures for sustained production of plants. Flow cytometry was used to determine the nuclear deoxyribonucleic acid content and the ploidy status of the in vitro grown population. The efficacy of the micropropagation protocols developed in this study represents a significant advancement in the conservation and sustained mass propagation of breadfruit germplasm in a controlled environment free from contamination. PMID:17710379

  11. Evaluation of antioxidant, total phenol and flavonoid content and antimicrobial activities of Artocarpus altilis (breadfruit) of underutilized tropical fruit extracts.

    PubMed

    Jalal, Tara Kamal; Ahmed, Idris Adewale; Mikail, Maryam; Momand, Lailuma; Draman, Samsul; Isa, Muhammad Lokman Md; Abdull Rasad, Mohammad Syaiful Bahari; Nor Omar, Muhammad; Ibrahim, Muhammad; Abdul Wahab, Ridhwan

    2015-04-01

    Artocarpus altilis (breadfruit) pulp, peel and whole fruit were extracted with various solvents such as hexane, dichloromethane (DCM) and methanol. The antioxidant activity of these extracts were examined using the stable 2,2-diphenyl-1-picrylhydrazyl (DPPH) radical scavenging test. IC50 was 55 ± 5.89 μg/ml for the pulp part of methanol extract. In the β-carotene bleaching assay, the antioxidant activity was 90.02 ± 1.51 % for the positive control (Trolox) and 88.34 ± 1.31 % for the pulp part of the fruit methanol extract. The total phenolic content of the crude extracts was determined using the Folin-Ciocalteu procedure; methanol pulp part demonstrated the highest phenol content value of 781 ± 52.97 mg GAE/g of dry sample. While the total flavonoid content was determined using the aluminium chloride colorimetric assay, the highest value of 6213.33 ± 142.22 mg QE/g was indicated by pulp part of the fruit methanol extract. The antimicrobial activity of the crude extracts was tested using disc diffusion method against pathogenic microorganisms: Staphylococcus aureus, Staphylococcus epidermidis, Bacillus cereus, Salmonella typhimurium, Escherichia coli, Klebsiella pneumonia and Candida albicans. Methanol extract of pulp part was recorded to have the highest zone of inhibition against Gram-positive and Gram-negative bacteria. The minimum inhibitory concentration (MIC) and MBC/minimal fungicidal concentration (MFC) for the extracts were also determined using the microdilution method ranging from 4000 to 63 μg/ml against pathogenic microbes. The MBC/MFC values varied from 250 to 4000 μg/ml. A correlation between antioxidant activity assays, antimicrobial activity and phenolic content was established. The results shows that the various parts of A. altilis fruit extracts promising antioxidant activities have potential bioactivities due to high content of phenolic compounds. PMID:25649443

  12. Interaction of sugar stabilized silver nanoparticles with the T-antigen specific lectin, jacalin from Artocarpus integrifolia.

    PubMed

    Ayaz Ahmed, Khan Behlol; Mohammed, Ansari Sulthan; Veerappan, Anbazhagan

    2015-06-15

    The advances in nanomedicine demonstrate the anticancer properties of silver nanoparticles (AgNPs) and considered as an alternative to the available chemotherapeutic agents. Owing to the preferential interaction of Artocarpus integrifolia lectin (jacalin) with Galβ1-3GalNAcα (a chemically well-defined tumor associated antigen), a study was undertaken to understand the interaction mechanism of AgNPs with jacalin in presence of specific sugar, galactose. Fluorescence spectroscopic analysis revealed that the AgNPs binding significantly quenched the intrinsic fluorescence of jacalin through a static quenching mechanism, and a non-radiative energy transfer occurred within the molecules. Association constants obtained from the interaction of different sugar-stabilized AgNPs with jacalin are in the order of 10(4)M(-1), this is in the same range as those obtained for the interaction of lectin with carbohydrate and hydrophobic ligand. Each subunit of the tetrameric jacalin binds one AgNPs, and the stoichiometry was unaffected by the presence of the specific sugar, galactose. Hemagglutination assay shows that sugar stabilized AgNPs interacts to jacalin at a site that is different from the saccharide-binding site. Analysis of the FTIR spectra of jacalin indicates that the binding of AgNPs does not alter the secondary structure of jacalin. More importantly, AgNPs exists in nano form even after interacting with the lectin. These results suggest that the development of lectin-AgNPs conjugate would be possible for diagnosis and treatment of cancer. PMID:25770933

  13. Interaction of sugar stabilized silver nanoparticles with the T-antigen specific lectin, jacalin from Artocarpus integrifolia

    NASA Astrophysics Data System (ADS)

    Ayaz Ahmed, Khan Behlol; Mohammed, Ansari Sulthan; Veerappan, Anbazhagan

    2015-06-01

    The advances in nanomedicine demonstrate the anticancer properties of silver nanoparticles (AgNPs) and considered as an alternative to the available chemotherapeutic agents. Owing to the preferential interaction of Artocarpus integrifolia lectin (jacalin) with Galβ1-3GalNAcα (a chemically well-defined tumor associated antigen), a study was undertaken to understand the interaction mechanism of AgNPs with jacalin in presence of specific sugar, galactose. Fluorescence spectroscopic analysis revealed that the AgNPs binding significantly quenched the intrinsic fluorescence of jacalin through a static quenching mechanism, and a non-radiative energy transfer occurred within the molecules. Association constants obtained from the interaction of different sugar-stabilized AgNPs with jacalin are in the order of 104 M-1, this is in the same range as those obtained for the interaction of lectin with carbohydrate and hydrophobic ligand. Each subunit of the tetrameric jacalin binds one AgNPs, and the stoichiometry was unaffected by the presence of the specific sugar, galactose. Hemagglutination assay shows that sugar stabilized AgNPs interacts to jacalin at a site that is different from the saccharide-binding site. Analysis of the FTIR spectra of jacalin indicates that the binding of AgNPs does not alter the secondary structure of jacalin. More importantly, AgNPs exists in nano form even after interacting with the lectin. These results suggest that the development of lectin-AgNPs conjugate would be possible for diagnosis and treatment of cancer.

  14. Pyranocycloartobiloxanthone A, a novel gastroprotective compound from Artocarpus obtusus Jarret, against ethanol-induced acute gastric ulcer in vivo.

    PubMed

    Sidahmed, Heyam M A; Hashim, Najihah Mohd; Amir, Junaidah; Abdulla, Mahmood Ameen; Hadi, A Hamid A; Abdelwahab, Siddig Ibrahim; Taha, Manal Mohamed Elhassan; Hassandarvish, Pouya; Teh, Xinsheng; Loke, Mun Fai; Vadivelu, Jamuna; Rahmani, Mawardi; Mohan, Syam

    2013-07-15

    Pyranocycloartobiloxanthone A (PA), a xanthone derived from the Artocarpus obtusus Jarret, belongs to the Moraceae family which is native to the tropical forest of Malaysia. In this study, the efficacy of PA as a gastroprotective compound was examined against ethanol-induced ulcer model in rats. The rats were pretreated with PA and subsequently exposed to acute gastric lesions induced by absolute ethanol. The ulcer index, gastric juice acidity, mucus content, histological analysis, glutathione (GSH) levels, malondialdehyde level (MDA), nitric oxide (NO) and non-protein sulfhydryl group (NP-SH) contents were evaluated in vivo. The activities of PA as anti-Helicobacter pylori, cyclooxygenase-2 (COX-2) inhibitor and free radical scavenger were also investigated in vitro. The results showed that the oral administration of PA protects gastric mucosa from ethanol-induced gastric lesions. PA pretreatment significantly (p<0.05) restored the depleted GSH, NP-SH and NO levels in the gastric homogenate. Moreover, PA significantly (p<0.05) reduced the elevated MDA level due to ethanol administration. The gastroprotective effect of PA was associated with an over expression of HSP70 and suppression of Bax proteins in the ulcerated tissue. In addition, PA exhibited a potent FRAP value and significant COX-2 inhibition. It also showed a significant minimum inhibitory concentration (MIC) against H. pylori bacterium. The efficacy of PA was accomplished safely without the presence of any toxicological parameters. The results of the present study indicate that the gastroprotective effect of PA might contribute to the antioxidant and anti-inflammatory properties as well as the anti-apoptotic mechanism and antibacterial action against Helicobacter pylori. PMID:23570997

  15. Effect of the hot water extract of Artocarpus camansi leaves on 2,4,6-trinitrochlorobenzene (TNCB)-induced contact hypersensitivity in mice.

    PubMed

    Salonga, Reginald Bayani; Hisaka, Shinsuke; Nose, Mitsuhiko

    2014-01-01

    Medicinal plants with reported anti-inflammatory activity could have the potential use as anti-allergens and inhibitors of allergic contact dermatitis reactions produced by allergens and chemicals. Some species from the genus Artocarpus were reported to have anti-inflammatory activity. In the Philippines one local source is Artocarpus camansi BLANCO (Moraceae), which is utilized as an ingredient of their cuisine, and decoction of leaves is used for diabetes and baths of people with rheumatism. The objective of this study was to evaluate the effect of the hot water extract of A. camansi leaves on contact hypersensitivity (CHS) in mice. Contact hypersensitivity was induced using 2,4,6-trinitrochlorobenzene (TNCB). The results showed that the A. camansi hot water extract exhibited significant activity against the swelling produced during 24 h and 48 h post-challenge. The same responses were observed from the mice that received the kamansi ethanol-precipitate (KEP) and kamansi ethanol precipitate water-soluble (KEPWS) fractions. Since the high molecular mass fraction showed the significant activity, we therefore speculate that the compound responsible might be a polysaccharide and/or glycoprotein. In conclusion, our results suggest that the hot water extract of A. camansi leaves might be an effective natural product to treat allergic contact dermatitis. However, further investigations are required to understand the mechanisms involved. PMID:24583870

  16. A Hundred Years of Peter Pan

    ERIC Educational Resources Information Center

    Hollindale, Peter

    2005-01-01

    The centenary of the first performance of J. M. Barrie's Peter Pan was celebrated in December 2004. Taking account of the various events in Britain to mark the occasion--newspaper articles, radio and television programmes, retrospects in the original theatre--this article examines the status and popularity of Peter Pan after a hundred years. The…

  17. African Drum and Steel Pan Ensembles.

    ERIC Educational Resources Information Center

    Sunkett, Mark E.

    2000-01-01

    Discusses how to develop both African drum and steel pan ensembles providing information on teacher preparation, instrument choice, beginning the ensemble, and lesson planning. Includes additional information for the drum ensembles. Lists references and instructional materials, sources of drums and pans, and common note layout/range for steel pan…

  18. Disruption of tillage pans by slot tillage

    Technology Transfer Automated Retrieval System (TEKTRAN)

    In some areas of the central Great Plains, traditional sweep tillage for weed control has led to a root-restrictive tillage pan approximately 10 to 15 cm beneath the soil surface. Producers have shown interest in methods to disrupt this tillage pan prior to transitioning to no-till soil management. ...

  19. Peter Pan: The Text and the Myth.

    ERIC Educational Resources Information Center

    Hollindale, Peter

    1993-01-01

    Shows how the critical reception of J. M. Barrie's "Peter Pan" has varied widely since its publication. Describes the mythical qualities of the Peter Pan character and gives reasons why the story is still popular with children and why it should continue to be taught and read. (HB)

  20. Dry deposition of pan to grassland vegetation

    SciTech Connect

    Doskey, P.V.; Wesely, M.L.; Cook, D.R.; Gao, W.

    1994-01-01

    Peroxyacetyl nitrate or PAN (CH{sub 3}C(O)OONO{sub 2}) is formed in the lower troposphere via photochemical reactions involving nitrogen oxides (NO{sub x}) and non-methane hydrocarbons (NMHCs). PAN has a lifetime in the free troposphere of about three months and is removed by photolysis or reaction with OH. Dry deposition will decrease its lifetime, although the few measurements that have been made indicate that this process is slow. Measurements of the uptake of PAN by alfalfa in growth chambers indicated that the dry deposition velocity (downward flux divided by concentration at a specified height) was 0.75 cm s{sup {minus}1}. Garland and Penkett measured a dry deposition velocity of 0.25 cm s{sup {minus}1} for PAN to grass and soil in a return-flow wind tunnel. Shepson et al. (1992) analyzed trends of PAN and O{sub 3} concentrations in the stable nocturnal boundary layer over mixed deciduous/coniferous forests at night, when leaf stomata were closed, and concluded that the deposition velocity for PAN was at least 0.5 cm s{sup {minus}1}. We measured the dry deposition velocity of PAN to a grassland site in the midwestern United States with a modified Bowen ratio technique. Experiments were conducted on selected days during September, October, and November of 1990. An energy balance Bowen ratio station was used to observe the differences in air temperature and water vapor content between heights of 3.0 and 0.92 m and to evaluate the surface energy balance. Air samples collected at the same two heights in Teflon {reg_sign} bags were analyzed for PAN by a gas chromatographic technique. We present an example of the variations of PAN concentrations and gradients observed during the day and compare measurements of the dry deposition velocity to expectations based on the physicochemical properties of PAN.

  1. Differences in evaporation between a floating pan and class a pan on land

    USGS Publications Warehouse

    Masoner, J.R.; Stannard, D.I.; Christenson, S.C.

    2008-01-01

    Research was conducted to develop a method for obtaining floating pan evaporation rates in a small (less than 10,000 m2) wetland, lagoon, or pond. Floating pan and land pan evaporation data were collected from March 1 to August 31, 2005, at a small natural wetland located in the alluvium of the Canadian River near Norman, Oklahoma, at the U.S. Geological Survey Norman Landfill Toxic Substances Hydrology Research Site. Floating pan evaporation rates were compared with evaporation rates from a nearby standard Class A evaporation pan on land. Floating pan evaporation rates were significantly less than land pan evaporation rates for the entire period and on a monthly basis. Results indicated that the use of a floating evaporation pan in a small free-water surface better simulates actual physical conditions on the water surface that control evaporation. Floating pan to land pan ratios were 0.82 for March, 0.87 for April, 0.85 for May, 0.85 for June, 0.79 for July, and 0.69 for August. ?? 2008 American Water Resources Association.

  2. STEREO Sees Comet Pan-STARRS

    NASA Video Gallery

    In early March 2013, Comet PanSTARRS became visible to the naked eye in the night sky in the Northern Hemisphere, appearing with a similar shape and brightness as a star, albeit with a trailing tai...

  3. 3 CFR 8651 - Proclamation 8651 of April 8, 2011. Pan American Day and Pan American Week, 2011

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 3 The President 1 2012-01-01 2012-01-01 false Proclamation 8651 of April 8, 2011. Pan American Day and Pan American Week, 2011 8651 Proclamation 8651 Presidential Documents Proclamations Proclamation 8651 of April 8, 2011 Proc. 8651 Pan American Day and Pan American Week, 2011By the President of...

  4. 3 CFR 8798 - Proclamation 8798 of April 9, 2012. Pan American Day and Pan American Week, 2012

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 3 The President 1 2013-01-01 2013-01-01 false Proclamation 8798 of April 9, 2012. Pan American Day and Pan American Week, 2012 8798 Proclamation 8798 Presidential Documents Proclamations Proclamation 8798 of April 9, 2012 Proc. 8798 Pan American Day and Pan American Week, 2012By the President of...

  5. 3 CFR 8957 - Proclamation 8957 of April 12, 2013. Pan American Day and Pan American Week, 2013

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 3 The President 1 2014-01-01 2014-01-01 false Proclamation 8957 of April 12, 2013. Pan American Day and Pan American Week, 2013 8957 Proclamation 8957 Presidential Documents Proclamations Proclamation 8957 of April 12, 2013 Proc. 8957 Pan American Day and Pan American Week, 2013By the President...

  6. Structural basis for Pan3 binding to Pan2 and its function in mRNA recruitment and deadenylation

    PubMed Central

    Wolf, Jana; Valkov, Eugene; Allen, Mark D; Meineke, Birthe; Gordiyenko, Yuliya; McLaughlin, Stephen H; Olsen, Tayla M; Robinson, Carol V; Bycroft, Mark; Stewart, Murray; Passmore, Lori A

    2014-01-01

    The conserved eukaryotic Pan2–Pan3 deadenylation complex shortens cytoplasmic mRNA 3′ polyA tails to regulate mRNA stability. Although the exonuclease activity resides in Pan2, efficient deadenylation requires Pan3. The mechanistic role of Pan3 is unclear. Here, we show that Pan3 binds RNA directly both through its pseudokinase/C-terminal domain and via an N-terminal zinc finger that binds polyA RNA specifically. In contrast, isolated Pan2 is unable to bind RNA. Pan3 binds to the region of Pan2 that links its N-terminal WD40 domain to the C-terminal part that contains the exonuclease, with a 2:1 stoichiometry. The crystal structure of the Pan2 linker region bound to a Pan3 homodimer shows how the unusual structural asymmetry of the Pan3 dimer is used to form an extensive high-affinity interaction. This binding allows Pan3 to supply Pan2 with substrate polyA RNA, facilitating efficient mRNA deadenylation by the intact Pan2–Pan3 complex. PMID:24872509

  7. 3 CFR 8495 - Proclamation 8495 of April 9, 2010. Pan American Day and Pan American Week, 2010

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 3 The President 1 2011-01-01 2011-01-01 false Proclamation 8495 of April 9, 2010. Pan American Day and Pan American Week, 2010 8495 Proclamation 8495 Presidential Documents Proclamations Proclamation 8495 of April 9, 2010 Proc. 8495 Pan American Day and Pan American Week, 2010By the President of the United States of America A Proclamation...

  8. Pan-information Location Map

    NASA Astrophysics Data System (ADS)

    Zhu, X. Y.; Guo, W.; Huang, L.; Hu, T.; Gao, W. X.

    2013-11-01

    A huge amount of information, including geographic, environmental, socio-economic, personal and social network information, has been generated from diverse sources. Most of this information exists separately and is disorderly even if some of it is about the same person, feature, phenomenon or event. Users generally need to collect related information from different sources and then utilize them in applications. An automatic mechanism, therefore, for establishing a connection between potentially-related information will profoundly expand the usefulness of this huge body of information. A connection tie is semantic location describing semantically concepts and attributes of locations as well as relationships between locations, since 80% of information contains some kind of geographic reference but not all of geographic reference has explicit geographic coordinates. Semantic location is an orthogonal form of location representation which can be represented as domain ontology or UML format. Semantic location associates various kinds of information about a same object to provide timely information services according to users' demands, habits, preferences and applications. Based on this idea, a Pan-Information Location Map (PILM) is proposed as a new-style 4D map to associates semantic location-based information dynamically to organize and consolidate the locality and characteristics of corresponding features and events, and delivers on-demand information with a User-Adaptive Smart Display (UASD).

  9. The Pan-STARRS discovery machine

    NASA Astrophysics Data System (ADS)

    Chambers, Kenneth C.

    2014-11-01

    The Pan-STARRS System has proven to be a remarkable machine for discovery. The PS1 Science Mission has drawn to a close, and the second Pan-STARRS survey, optimized for NEO's has begun. PS2 is in the commissioning stages and will eventually support NEO discovery as well. The performance of the PS1 system, sky coverage, cadence, and data quality of the Pan-STARRS1 Surveys will be presented as well as progress in reprocessing of the data taken to date and the plans for the public release of all Pan-STARRS1 data products in the spring of 2015. Science results related to planetary studies and the dust will be presented. The Pan-STARRS1 Surveys (PS1) have been made possible through contributions of the Institute for Astronomy, the University of Hawaii, the Pan-STARRS Project Office, the Max-Planck Society and its participating institutes, the Max Planck Institute for Astronomy, Heidelberg and the Max Planck Institute for Extraterrestrial Physics, Garching, The Johns Hopkins University, Durham University, the University of Edinburgh, Queen's University Belfast, the Harvard-Smithsonian Center for Astrophysics, the Las Cumbres Observatory Global Telescope Network Incorporated, the National Central University of Taiwan, the Space Telescope Science Institute, the National Aeronautics and Space Administration under Grant No. NNX08AR22G issued through the Planetary Science Division of the NASA Science Mission Directorate, the National Science Foundation under Grant No. AST-1238877, the University of Maryland, and Eotvos Lorand University (ELTE).

  10. Lunar PanCam: Adapting ExoMars PanCam for the ESA Lunar Lander

    NASA Astrophysics Data System (ADS)

    Coates, A. J.; Griffiths, A. D.; Leff, C. E.; Schmitz, N.; Barnes, D. P.; Josset, J.-L.; Hancock, B. K.; Cousins, C. R.; Jaumann, R.; Crawford, I. A.; Paar, G.; Bauer, A.; the PanCam Team

    2012-12-01

    A scientific camera system would provide valuable geological context from the surface for lunar lander missions. Here, we describe the PanCam instrument from the ESA ExoMars rover and its possible adaptation for the proposed ESA lunar lander. The scientific objectives of the ESA ExoMars rover are designed to answer several key questions in the search for life on Mars. The ExoMars PanCam instrument will set the geological and morphological context for that mission. We describe the PanCam scientific objectives in geology, and atmospheric science, and 3D vision objectives. We also describe the design of PanCam, which includes a stereo pair of Wide Angle Cameras (WACs), each of which has a filter wheel, and a High Resolution Camera for close up investigations. The cameras are housed in an optical bench (OB) and electrical interface is provided via the PanCam Interface Unit (PIU). Additional hardware items include a PanCam Calibration Target (PCT). We also briefly discuss some PanCam testing during field trials. In addition, we examine how such a 'Lunar PanCam' could be adapted for use on the Lunar surface on the proposed ESA lunar lander.

  11. 76 FR 20831 - Pan American Day and Pan American Week, 2011

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-13

    ... From the Federal Register Online via the Government Publishing Office #0; #0; #0; Presidential Documents #0; #0; #0;#0;Federal Register / Vol. 76, No. 71 / Wednesday, April 13, 2011 / Presidential Documents#0;#0; ] Proclamation 8651 of April 8, 2011 Pan American Day and Pan American Week, 2011 By the President of the United States of America A...

  12. 75 FR 19181 - Pan American Day and Pan American Week, 2010

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-14

    ... the two hundred and thirty-fourth. (Presidential Sig.) [FR Doc. 2010-8672 Filed 4-13-10; 8:45 am... Documents#0;#0; #0; #0;Title 3-- #0;The President ] Proclamation 8495 of April 9, 2010 Pan American Day and Pan American Week, 2010 By the President of the United States of America A Proclamation More than...

  13. A mathematical model of pan evaporation under steady state conditions

    NASA Astrophysics Data System (ADS)

    Lim, Wee Ho; Roderick, Michael L.; Farquhar, Graham D.

    2016-09-01

    In the context of changing climate, global pan evaporation records have shown a spatially-averaged trend of ∼ -2 to ∼ -3 mm a-2 over the past 30-50 years. This global phenomenon has motivated the development of the "PenPan" model (Rotstayn et al., 2006). However, the original PenPan model has yet to receive an independent experimental evaluation. Hence, we constructed an instrumented US Class A pan at Canberra Airport (Australia) and monitored it over a three-year period (2007-2010) to uncover the physics of pan evaporation under non-steady state conditions. The experimental investigations of pan evaporation enabled theoretical formulation and parameterisation of the aerodynamic function considering the wind, properties of air and (with or without) the bird guard effect. The energy balance investigation allowed for detailed formulation of the short- and long-wave radiation associated with the albedos and the emissivities of the pan water surface and the pan wall. Here, we synthesise and generalise those earlier works to develop a new model called the "PenPan-V2" model for application under steady state conditions (i.e., uses a monthly time step). Two versions (PenPan-V2C and PenPan-V2S) are tested using pan evaporation data available across the Australian continent. Both versions outperformed the original PenPan model with better representation of both the evaporation rate and the underlying physics of a US Class A pan. The results show the improved solar geometry related calculations (e.g., albedo, area) for the pan system led to a clear improvement in representing the seasonal cycle of pan evaporation. For general applications, the PenPan-V2S is simpler and suited for applications including an evaluation of long-term trends in pan evaporation.

  14. Pan-STARRS Moving Object Processing System

    NASA Astrophysics Data System (ADS)

    Jedicke, R.; Denneau, L.; Grav, T.; Heasley, J.; Kubica, Jeremy; Pan-STARRS Team

    2005-12-01

    The Institute for Astronomy at the University of Hawaii is developing a large optical astronomical surveying system - the Panoramic Survey Telescope and Rapid Response System (Pan-STARRS). The Moving Object Processing System (MOPS) client of the Pan-STARRS image processing pipeline is developing software to automatically discover and identify >90% of near-Earth objects (NEOs) 300m in diameter and >80% of other classes of asteroids and comets. In developing its software, MOPS has created a synthetic solar system model (SSM) with over 10 million objects whose distributions of orbital characteristics matches those expected for objects that Pan-STARRS will observe. MOPS verifies its correct operation by simulating the survey and subsequent discovery of synthetically generated objects. MOPS also employs novel techniques in handling the computationally difficult problem of linking large numbers of unknown asteroids in a field of detections. We will describe the creation and verification of the Pan-STARRS MOPS SSM, demonstrate synthetic detections and observations by the MOPS, describe the MOPS asteroid linking techniques, describe accuracy and throughput of the entire MOPS system, and provide predictions regarding the numbers and kinds of objects, including as yet undiscovered "extreme objects", that the MOPS expects to find over its 10-year lifetime. Pan-STARRS is funded under a grant from the U.S. Air Force.

  15. Processing Petabytes for Pan-STARRS

    NASA Astrophysics Data System (ADS)

    Price, Paul A.; Magnier, E. A.; Hoblitt, J.; Pan-STARRS Team

    2007-05-01

    The Pan-STARRS Image Processing Pipeline is responsible for the calibration and characterization of the images flowing from the newly commissioned Pan-STARRS 1 Telescope. Every 40 sec, a 1.4 billion pixel exposure requires standard detrend operations, source identification and photometry, astrometry, warping to a sky tesselation, subtraction against a template and photometry of variable sources. To meet this challenge, we have designed a flexible pipeline, able to reduce single-CCD cameras as well as the behemoth mosaic cameras. We describe the design and current status of our pipeline, including performance on actual PS1 images.

  16. 7 CFR 58.913 - Evaporators and vacuum pans.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 3 2013-01-01 2013-01-01 false Evaporators and vacuum pans. 58.913 Section 58.913....913 Evaporators and vacuum pans. All equipment used in the removal of moisture from milk or milk... Sanitary Standards for Milk and Milk Products Evaporators and Vacuum Pans....

  17. Student-Centered Designs of Pan-African Literature Courses

    ERIC Educational Resources Information Center

    M'Baye, Babacar

    2010-01-01

    A student-centered teaching methodology is an essential ingredient of a successful Pan-African literary course. In this article, the author defines Pan-Africanism and how to go about designing a Pan-African literature course. The author combines reading assignments with journals, film presentations, and lectures in a productive learning…

  18. 7 CFR 58.913 - Evaporators and vacuum pans.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 3 2012-01-01 2012-01-01 false Evaporators and vacuum pans. 58.913 Section 58.913....913 Evaporators and vacuum pans. All equipment used in the removal of moisture from milk or milk... Sanitary Standards for Milk and Milk Products Evaporators and Vacuum Pans....

  19. 7 CFR 58.913 - Evaporators and vacuum pans.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 3 2014-01-01 2014-01-01 false Evaporators and vacuum pans. 58.913 Section 58.913....913 Evaporators and vacuum pans. All equipment used in the removal of moisture from milk or milk... Sanitary Standards for Milk and Milk Products Evaporators and Vacuum Pans....

  20. 7 CFR 58.913 - Evaporators and vacuum pans.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 3 2010-01-01 2010-01-01 false Evaporators and vacuum pans. 58.913 Section 58.913....913 Evaporators and vacuum pans. All equipment used in the removal of moisture from milk or milk... Sanitary Standards for Milk and Milk Products Evaporators and Vacuum Pans....

  1. 7 CFR 58.913 - Evaporators and vacuum pans.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 3 2011-01-01 2011-01-01 false Evaporators and vacuum pans. 58.913 Section 58.913....913 Evaporators and vacuum pans. All equipment used in the removal of moisture from milk or milk... Sanitary Standards for Milk and Milk Products Evaporators and Vacuum Pans....

  2. Rotatable prism for pan and tilt

    NASA Technical Reports Server (NTRS)

    Ball, W. B.

    1980-01-01

    Compact, inexpensive, motor-driven prisms change field of view of TV camera. Camera and prism rotate about lens axis to produce pan effect. Rotating prism around axis parallel to lens produces tilt. Size of drive unit and required clearance are little more than size of camera.

  3. The PAN-DA data acquisition system

    SciTech Connect

    Petravick, D.; Berg, D.; Berman, E.; Bernett, M.; Constanta-Fanourakis, P.; Dorries, T.; Haire, M.; Kaczar, K; MacKinnon, B.; Moore, C.; Nicinski, T.; Oleynik, G.; Pordes, R.; Sergey, G.; Votava, M.; White, V.

    1989-05-01

    The Online and Data Acquisition software groups at Fermi National Accelerator Laboratory have extended the VAXONLINE data acquisition package to include a VME based data path. The resulting environment, PAN-DA, provides a high throughput for logging, filtering, formatting and selecting events. 10 refs., 1 fig.

  4. Imitation in Neonatal Chimpanzees ("Pan Troglodytes")

    ERIC Educational Resources Information Center

    Myowa-Yamakoshi, Masako; Tomonaga, Masaki; Tanaka, Masayuki; Matsuzawa, Tetsuro

    2004-01-01

    This paper provides evidence for imitative abilities in neonatal chimpanzees ("Pan troglodytes"), our closest relatives. Two chimpanzees were reared from birth by their biological mothers. At less than 7 days of age the chimpanzees could discriminate between, and imitate, human facial gestures (tongue protrusion and mouth opening). By the time…

  5. Effects of Methanol Extract of Breadfruit (Artocarpus altilis) on Atherogenic Indices and Redox Status of Cellular System of Hypercholesterolemic Male Rats.

    PubMed

    Adaramoye, Oluwatosin Adekunle; Akanni, Olubukola Oyebimpe

    2014-01-01

    We investigated the effects of methanol extract of Artocarpus altilis (AA) on atherogenic indices and redox status of cellular system of rats fed with dietary cholesterol while Questran (QUE) served as standard. Biochemical indices such as total cholesterol (TC), triglycerides (TG), low- and high-density lipoproteins-cholesterol (LDL-C and HDL-C), aspartate and alanine aminotransferases (AST and ALT), lactate dehydrogenase (LDH), reduced glutathione, glutathione-s-transferase, glutathione peroxidase (GPx), catalase (CAT), superoxide dismutase (SOD), and lipid peroxidation (LPO) were assessed. Hypercholesterolemic (HC) rats had significantly increased relative weight of liver and heart. Dietary cholesterol caused a significant increase (P < 0.05) in the levels of serum, hepatic, and cardiac TC by 110%, 70%, and 85%, LDL-C by 79%, 82%, and 176%, and TG by 68%, 96%, and 62%, respectively. Treatment with AA significantly reduced the relative weight of the organs and lipid parameters. There were beneficial increases in serum and cardiac HDL-C levels in HC rats treated with AA. In HC rats, serum LDH, ALT, and AST activities and levels of LPO were increased, whereas hepatic and cardiac SOD, CAT, and GPx were reduced. All biochemical and histological alterations were ameliorated upon treatment with AA. Extract of AA had protective effects against dietary cholesterol-induced hypercholesterolemia. PMID:24592277

  6. Extracts of Artocarpus communis decrease α-melanocyte stimulating hormone-induced melanogenesis through activation of ERK and JNK signaling pathways.

    PubMed

    Fu, Yi-Tzu; Lee, Chiang-Wen; Ko, Horng-Huey; Yen, Feng-Lin

    2014-01-01

    Artocarpus communis is an agricultural plant that is also used in folk medicine to prevent skin diseases, including acne and dermatitis. Extracts of A. communis have been used to effectively inhibit melanogenesis; however, the antimelanogenesis mechanism of these extracts has not yet been investigated. The present study utilized a cell-free tyrosinase assay as well as α-melanocyte stimulating hormone- (-MSH-) induced tyrosinase assay conducted in B16F10 cells, performed a cytotoxicity assay, and determined cellular melanin content to examine the effects of a methanolic extract of A. communis (ACM) and various organic partition fractions of A. communis on melanogenesis. In addition, we performed western blot analysis to elucidate the mechanism of their antimelanogenesis effect. Our results indicated that, except for the n-hexane extract, ACM and the various partition extracts at noncytotoxic concentrations effectively decreased melanin content and tyrosinase activity by downregulating microphthalmia-associated transcription factor (MITF) and phosphorylated cAMP response element-binding protein (p-CREB). Moreover, ACM and the partition fractions activated phosphorylation of extracellular signal-regulated kinase (ERK) and c-Jun N-terminal kinase (JNK) to inhibit the synthesis of MITF and finally to decrease melanin production. In conclusion, we suggest that noncytotoxic concentrations of ACM and the various partition fractions may be useful as references for developing skin-lighting agents for use in medicines or cosmetics. PMID:24737988

  7. Crystallization and preliminary X-ray diffraction studies of frutalin, an α-D-galactose-specific lectin from Artocarpus incisa seeds.

    PubMed

    Monteiro-Moreira, Ana Cristina de Oliveira; D'Muniz Pereira, Humberto; Vieira Neto, Antonio Eufrasio; Mendes Batista Moreno, Frederico Bruno; Duarte Pinto Lobo, Marina; de Sousa, Felipe Domingos; Moreira, Renato de Azevedo

    2015-10-01

    Frutalin is an α-D-galactose-specific carbohydrate-binding glycoprotein with antitumour properties and is a powerful tool for tumour biomarker discovery. The crystallization and preliminary X-ray diffraction analysis of this lectin, which was isolated from Artocarpus incisa seeds, are reported here. Frutalin was purified and submitted to mass-spectrometric analysis. Diverse masses at approximately 16 kDa were observed in the deconvoluted spectra, which support the presence of isoforms. The best frutalin crystals were grown within a week in 0.1 M citric acid pH 3.5 which contained 25% PEG 3350 as a precipitant at 293 K, and diffracted to a maximum resolution of 1.81 Å. The monoclinic crystals belonged to space group I2, with unit-cell parameters a = 76.17, b = 74.56, c = 118.98 Å, β = 96.56°. A molecular-replacement solution was obtained which indicated the presence of four monomers per asymmetric unit. Crystallographic refinement of the structure is in progress. PMID:26457519

  8. Evaluation of the hypoglycemic and hypolipidemic effects of an ethylacetate fraction of Artocarpus heterophyllus (jak) leaves in streptozotocin-induced diabetic rats

    PubMed Central

    Chackrewarthy, S.; Thabrew, M. I.; Weerasuriya, M. K. B.; Jayasekera, S.

    2010-01-01

    Aqueous extracts of mature leaves of Artocarpus heterophyllus (jak) are used by traditional medical practitioners in Sri Lanka and India for the treatment of diabetes. This study was conducted to investigate the hypoglycemic and hypolipidemic effects of an ethylacetate (EA) fraction of the mature leaves of A. heterophyllus in a streptozotocin (STZ) induced diabetic rat model. In normoglycemic rats, administration of a single dose (20 mg/kg) of the EA fraction resulted in a significant (P < 0.05) reduction in the fasting blood glucose concentration and a significant improvement in glucose tolerance (P < 0.05), compared to the controls. In STZ-induced diabetic rats, chronic administration of the EA fraction of A. heterophyllus leaves daily for 5 weeks resulted in a significant lowering of serum glucose, cholesterol and triglyceride (TG) levels. Compared to control diabetic rats, the extract-treated rats had 39% less serum glucose, 23% lower serum total cholesterol and 40% lower serum TG levels and 11% higher body weight at the end of the fifth week. The percentage reductions in the serum parameters mediated by the test fraction were comparable with those produced by glibenclamide (0.6 mg/kg), the reference drug used in this study. It can be concluded that the EA fraction of A. heterophyllus leaves contains one or more hypoglycemic and hypolipidemic principles which have the potential to be developed further for the treatment of diabetes specifically associated with a hyperlipidemic state. PMID:20931077

  9. Effects of Methanol Extract of Breadfruit (Artocarpus altilis) on Atherogenic Indices and Redox Status of Cellular System of Hypercholesterolemic Male Rats

    PubMed Central

    Adaramoye, Oluwatosin Adekunle; Akanni, Olubukola Oyebimpe

    2014-01-01

    We investigated the effects of methanol extract of Artocarpus altilis (AA) on atherogenic indices and redox status of cellular system of rats fed with dietary cholesterol while Questran (QUE) served as standard. Biochemical indices such as total cholesterol (TC), triglycerides (TG), low- and high-density lipoproteins-cholesterol (LDL-C and HDL-C), aspartate and alanine aminotransferases (AST and ALT), lactate dehydrogenase (LDH), reduced glutathione, glutathione-s-transferase, glutathione peroxidase (GPx), catalase (CAT), superoxide dismutase (SOD), and lipid peroxidation (LPO) were assessed. Hypercholesterolemic (HC) rats had significantly increased relative weight of liver and heart. Dietary cholesterol caused a significant increase (P < 0.05) in the levels of serum, hepatic, and cardiac TC by 110%, 70%, and 85%, LDL-C by 79%, 82%, and 176%, and TG by 68%, 96%, and 62%, respectively. Treatment with AA significantly reduced the relative weight of the organs and lipid parameters. There were beneficial increases in serum and cardiac HDL-C levels in HC rats treated with AA. In HC rats, serum LDH, ALT, and AST activities and levels of LPO were increased, whereas hepatic and cardiac SOD, CAT, and GPx were reduced. All biochemical and histological alterations were ameliorated upon treatment with AA. Extract of AA had protective effects against dietary cholesterol-induced hypercholesterolemia. PMID:24592277

  10. Anti-inflammatory effect of the 5,7,4'-trihydroxy-6-geranylflavanone isolated from the fruit of Artocarpus communis in S100B-induced human monocytes.

    PubMed

    Lin, Jer-An; Fang, Song-Chwan; Wu, Chi-Hao; Huang, Shang-Ming; Yen, Gow-Chin

    2011-01-12

    The fruit of Artocarpus communis Moraceae, a traditional starch crop, is a rich source of phytochemicals, such as flavonoids and their derivatives. The aim of this study was to investigate whether 5,7,4'-trihydroxy-6-geranylflavanone (AC-GF), a geranyl flavonoid derivative isolated from the fruits of A. communis, could decrease the activation of inflammatory mediators induced by S100B (ligand of receptor for advanced glycation end products, RAGE) in THP-1 monocytes. According to the results, low levels of AC-GF (≤2.5 μM) showed a great inhibitory effect on gene expression of RAGE and down-regulated both TNF-α and IL-1β secretion and gene expression (p < 0.05). AC-GF also decreased reactive oxygen species (ROS) production in response to S100B (p < 0.05). Additionally, Western blotting revealed that AC-GF could effectively attenuate RAGE-dependent signaling, including expression of protein kinase C (PKC) and p47phox, phosphorylation of extracellular signal-regulated kinase (ERK) and p38 mitogen-activated protein kinase (MAPK), and particularly NF-κB activation (p < 0.05). In conclusion, this is the first report that AC-GF possesses great antioxidant and anti-inflammatory properties in vitro. This finding may contribute to increased implication and utilization of the fruit of A. communis Moraceae in functional foods. PMID:21126004

  11. Norartocarpetin from a folk medicine Artocarpus communis plays a melanogenesis inhibitor without cytotoxicity in B16F10 cell and skin irritation in mice

    PubMed Central

    2013-01-01

    Background Many natural products used in preventive medicine have also been developed as cosmeceutical ingredients in skin care products, such as Scutellaria baicalensis and Gardenia jasminoides. Norartocarpetin is one of the antioxidant and antityrosinase activity compound in Artocarpus communis; however, the cytotoxicity, skin irritation and antimelanogenesis mechanisms of norartocarpetin have not been investigated yet. Methods In the present study, cell viability in vitro and skin irritation in vivo are used to determine the safety of norartocarpetin. The melanogenesis inhibition of norartocarpetin was determined by cellular melanin content and tyrosinase in B16F10 melanoma cell. Moreover, we examined the related-melanogenesis protein by western blot analysis for elucidating the antimelanogenesis mechanism of norartocarpin. Results The result of the present study demonstrated that norartocarpetin not only present non-cytotoxic in B16F10 and human fibroblast cells but also non-skin irritation in mice. Moreover, our result also first found that norartocarpetin downregulated phospho-cAMP response element-binding (phospho-CREB) and microphthalmia-associated transcription factor (MITF) expression, which in turn decreased both synthesis of tyrosinases (TRP-1 and TRP-2) and cellular melanin content. This process is dependent on norartocarpetin phosphorylation by mitogen-activated protein kinases such as phospho-JNK and phospho-p38, and it results in decreased melanogenesis. Conclusion The present study suggests that norartocarpetin could be used as a whitening agent in medicine and/or cosmetic industry and need further clinical study. PMID:24325567

  12. Extracts of Artocarpus communis Decrease α-Melanocyte Stimulating Hormone-Induced Melanogenesis through Activation of ERK and JNK Signaling Pathways

    PubMed Central

    Fu, Yi-Tzu; Lee, Chiang-Wen; Ko, Horng-Huey; Yen, Feng-Lin

    2014-01-01

    Artocarpus communis is an agricultural plant that is also used in folk medicine to prevent skin diseases, including acne and dermatitis. Extracts of A. communis have been used to effectively inhibit melanogenesis; however, the antimelanogenesis mechanism of these extracts has not yet been investigated. The present study utilized a cell-free tyrosinase assay as well as α-melanocyte stimulating hormone- (-MSH-) induced tyrosinase assay conducted in B16F10 cells, performed a cytotoxicity assay, and determined cellular melanin content to examine the effects of a methanolic extract of A. communis (ACM) and various organic partition fractions of A. communis on melanogenesis. In addition, we performed western blot analysis to elucidate the mechanism of their antimelanogenesis effect. Our results indicated that, except for the n-hexane extract, ACM and the various partition extracts at noncytotoxic concentrations effectively decreased melanin content and tyrosinase activity by downregulating microphthalmia-associated transcription factor (MITF) and phosphorylated cAMP response element-binding protein (p-CREB). Moreover, ACM and the partition fractions activated phosphorylation of extracellular signal-regulated kinase (ERK) and c-Jun N-terminal kinase (JNK) to inhibit the synthesis of MITF and finally to decrease melanin production. In conclusion, we suggest that noncytotoxic concentrations of ACM and the various partition fractions may be useful as references for developing skin-lighting agents for use in medicines or cosmetics. PMID:24737988

  13. PAN/PS elctrospun fibers for oil spill cleanup

    NASA Astrophysics Data System (ADS)

    Ying, Qiao; Lili, Zhao; Haixiang, Sun; Peng, Li

    2014-08-01

    A high-capacity oil sorbent was fabricated by electrospinning using PS/PAN blend. Morphology, contact angle and oil adsorption of PAN/PS fiber and PP nonwoven fabric were studied. It was found that the PAN/PS fiber had a smaller diameter than PP, and the maximum sorption capacities of the PAN/PS sorbent for pump oil, peanut oil, diesel, and gasoline were 194.85, 131.7, 66.75, and 43.38 g/g, which were far higher than those of PP. The sorbent PS/PAN fiber showed a contact angle of water144.32° and diesel oil 0°. The sorption kinetics of PAN/PS and PP sorbent were also investigated. Compared with the commercial PP fabric, the PAN/PS fiber seems to have the ability to be used in oil-spill cleanup application.

  14. 14. RW Meyer Sugar Mill: 18761889. Sorghum Pan. Manufactured by ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    14. RW Meyer Sugar Mill: 1876-1889. Sorghum Pan. Manufactured by John Nott & Co., Honolulu, Hawaii, 1878. View: In the sorghum pan, heat was applied to the cane juice to clarify it, evaporate its water content, and concentrate the sugar crystals. The pan was set on a slope so that the juice would move through the compartments by gravity. The hand-lever sluice valves in the partition walls between the compartments permitted the sugar boiler to regulate the movement of batches of cane juice flowing through the pan. The metal fins projecting from the bottom of the pan imparted a circuitous route to the juice as it flowed through the pan--this made it flow over a much greater heated surface. The fins also supplemented the pan's heating surface by ... - R. W. Meyer Sugar Mill, State Route 47, Kualapuu, Maui County, HI

  15. BRDF of Salt Pan Regolith Samples

    NASA Technical Reports Server (NTRS)

    Georgiev, Georgi T.; Gatebe, Charles K.; Butler, James J.; King, Michael D.

    2008-01-01

    Laboratory Bi-directional Reflectance Distribution Function (BRDF) measurements of salt pan regolith samples are presented in this study in an effort to understand the role of spatial and spectral variability of the natural biome. The samples were obtained from Etosha Pan, Namibia (19.20 deg S, 15.93 deg E, alt. 1100 m). It is shown how the BRDF depends on the measurement geometry - incident and scatter angles and on the sample particle sizes. As a demonstration of the application of the results, airborne BRDF measurements acquires with NASA's Cloud Absorption Radiometer (CAR) over the same general site where the regolith samples were collected are compared with the laboratory results. Good agreement between laboratory measured and field measured BRDF is reported.

  16. The Imager for Mars Pathfinder Insurance Pan

    NASA Technical Reports Server (NTRS)

    Herkenhoff, K. E.; Johnson, J. R.; Weller, L. A.

    2003-01-01

    The Imager for Mars Pathfinder (IMP) obtained a full panorama of the Sagan Memorial Station landing site on Sol 2, before the IMP mast was deployed. The images in this panorama were taken in 4 filters (including stereo) and losslessly compressed to provide a high-quality multispectral survey of the landing site even if the IMP mast did not successfully deploy; this data set was therefore called the Insurance Pan. It was completed late in the afternoon of Sol 2, just before the IMP mast was (successfully) deployed. The data were stored in memory and returned to Earth after it became clear that downlink rates were higher than expected. The Insurance Pan horizontal (azimuth) coverage is nearly complete, with gaps caused by pointing errors and data packet losses. Stereo data were acquired in the blue (445 nm) filter, as well as right-eye green (531 nm), orange (600 nm), and near-infrared (752 nm) data.

  17. A model of the biogeographical journey from Proto-pan to Pan paniscus.

    PubMed

    Myers Thompson, Jo A

    2003-04-01

    Pan paniscus is unique in the group of African apes because of its range south of the Congo River. Examination of the bio-geographical journey of the genus Pan to the species P. paniscus is important when discussing the evolution of African apes. This paper is a review of the paleo-geographic events, the zoogeography, and faunal sorting which influenced P. paniscus divergence from the Proto-pan ancestor within the recent Miocene through Pliocene Epochs, approximately 10-2 MYA. Finally, by elucidating modern day evidence of food plant forms in the southern periphery exploited by P. paniscus in the forest/savanna mosaic habitat, we are able to conclude with those extrinsic events that most influenced the occurrence and distribution of P. paniscus. PMID:12687485

  18. Pan Eurasian Experiment (PEEX): a new research initiative focused on the Northern Pan-Eurasian Region

    NASA Astrophysics Data System (ADS)

    Petäjä, Tuukka; Lappalainen, Hanna; Zaytseva, Nina; Shvidenko, Anatoli; Kujansuu, Joni; Kerminen, Veli-Matti; Viisanen, Yrjö; Kotlyakov, Vladimir; Kasimov, Nikolai; Bondur, Valery; Matvienko, Gennadi; Zilitinkevich, Sergej; Kulmala, Markku

    2014-05-01

    The increasing human activities are changing the environment and the humanity is we are pushing the safe boundaries of the globe. It is of utmost importance to gauge with a comprehensive research program on the current status of the environment, particularly in the most vulnerable locations. Pan-Eurasian Experiment (PEEX) is a new multidisciplinary research approach aiming at resolving the major uncertainties in the Earth system science and global sustainability questions in the Arctic and boreal Pan-Eurasian regions. The PEEX program aims (i) to understand the Earth system and the influence of environmental and societal changes in pristine and industrialized Pan-Eurasian environments, (ii) to establish and sustain long-term, continuous and comprehensive ground-based airborne and seaborne research infrastructures, and to utilize satellite data and multi-scale model frameworks, (iii) to contribute to regional climate scenarios in the northern Pan-Eurasia and determine the relevant factors and interactions influencing human and societal wellbeing (iv) to promote the dissemination of PEEX scientific results and strategies in scientific and stake-holder communities and policy making, (v) to educate the next generation of multidisciplinary global change experts and scientists, and (vi) to increase the public awareness of climate change impacts in the Pan-Eurasian region. The development of PEEX research infrastructure will be one of the first activities of PEEX. PEEX will find synergies with the major European land-atmosphere observation infrastructures such as ICOS a research infrastructure to decipher the greenhouse gas balance of Europe and adjacent regions, ACTRIS (Aerosols, Clouds, and Trace gases Research InfraStructure Network-project), and ANAEE (The experimentation in terrestrial ecosystem research) networks and with the flag ship stations like the SMEARs (Station for Measuring Ecosystem-Atmosphere Relations) when design, re-organizing and networking existing

  19. Moracin C, A Phenolic Compound Isolated from Artocarpus heterophyllus, Suppresses Lipopolysaccharide-Activated Inflammatory Responses in Murine Raw264.7 Macrophages.

    PubMed

    Yao, Xue; Wu, Dang; Dong, Ningning; Ouyang, Ping; Pu, Jiaqian; Hu, Qian; Wang, Jingyuan; Lu, Weiqiang; Huang, Jin

    2016-01-01

    Artocarpus heterophyllus, a popular tropical fruit commonly known as the jackfruit tree, is normally planted in subtropical or tropical areas. Since a variety of phytochemicals isolated from A. heterophyllus have been found to possess potently anti-inflammatory, antiviral and antimalarial activities, researchers have devoted much interest to its potential pharmaceutical value. However, the exact mechanism underlying its anti-inflammatory activity is not well characterized. In this study, seven natural products isolated from A. heterophyllus, including 25-Hydroxycycloart-23-en-3-one (HY), Artocarpin (AR), Dadahol A (DA), Morachalcone A (MA), Artoheterophyllin B (AB), Cycloheterophyllin (CY) and Moracin C (MC) were collected. Lipopolysaccharide (LPS)-stimulated inflammatory response in RAW264.7 macrophages were used in this study. Among these compounds, MC significantly inhibited LPS-activated reactive oxygen species (ROS) and nitric oxide (NO) release without marked cytotoxicity. Furthermore, MC effectively reduced LPS stimulated up-regulation of mRNA and protein expression of inducible nitric oxide synthase (iNOS), cyclooxygenase-2 (COX-2), and serval pro-inflammatory cytokines (interleukin-1β (IL-1β), interleukin-6 (IL-6) and tumor necrosis factor α (TNF-α)). Mechanistic studies revealed that the anti-inflammatory effect of MC was associated with the activation of the mitogen activated protein kinases (MAPKs) (including p38, ERK and JNK) and nuclear factor-κB (NF-κB) pathways, especially reducing the nuclear translocation of NF-κB p65 subunit as revealed by nuclear separation experiment and confocal microscopy. PMID:27463712

  20. Hemostatic potential of latex proteases from Tabernaemontana divaricata (L.) R. Br. ex. Roem. and Schult. and Artocarpus altilis (Parkinson ex. F.A. Zorn) Forsberg.

    PubMed

    Singh, Maheshwari Kumari; Usha, R; Hithayshree, K R; Bindhu, O S

    2015-01-01

    Pharmacological properties exhibited by latex of plants are due to various biologically active compounds including several proteolytic enzymes. Present study evaluates hemostatic potential of Tabernaemontana divaricata and Artocarpus altilis from Apocynaceae and Moraceae families respectively. The latex of these plants were initially subjected to dialysis and crude extracts were estimated for proteolytic activity using casein as the substrate. Mean caseinolytic activity for 100 μg of latex protein was found to be 56.16 ± 0.57 and 45 ± 0.3 U/h for T. divaricata and A. altilis respectively. Caseinolytic activity by both the plant extracts was higher than standard proteases, papain and trypsin. However the difference was significant (p < 0.05) with papain alone. Crude enzymes (CE) from both plants exhibited coagulant activity on human platelet poor plasma by recalcification time. A significant reduction in clotting time was exhibited by T. divaricata compared to A. altilis (p < 0.05). These results were further substantiated with fibrinogen agarose plate assay. Crude enzyme of both plants also hydrolyzed blood clot. Mean % of thrombolysis by T. divaricata was 80.75 ± 1.2 and that of A. altilis was 70.24 ± 1.52. Inhibition studies confirmed cysteine protease nature of CE. Comparative analysis revealed T. divaricata to be the best among the two for its hemostatic potential. This study scientifically validates the use of latex from these plants in the management of fresh cuts or wounds. PMID:25603786

  1. Moracin C, A Phenolic Compound Isolated from Artocarpus heterophyllus, Suppresses Lipopolysaccharide-Activated Inflammatory Responses in Murine Raw264.7 Macrophages

    PubMed Central

    Yao, Xue; Wu, Dang; Dong, Ningning; Ouyang, Ping; Pu, Jiaqian; Hu, Qian; Wang, Jingyuan; Lu, Weiqiang; Huang, Jin

    2016-01-01

    Artocarpus heterophyllus, a popular tropical fruit commonly known as the jackfruit tree, is normally planted in subtropical or tropical areas. Since a variety of phytochemicals isolated from A. heterophyllus have been found to possess potently anti-inflammatory, antiviral and antimalarial activities, researchers have devoted much interest to its potential pharmaceutical value. However, the exact mechanism underlying its anti-inflammatory activity is not well characterized. In this study, seven natural products isolated from A. heterophyllus, including 25-Hydroxycycloart-23-en-3-one (HY), Artocarpin (AR), Dadahol A (DA), Morachalcone A (MA), Artoheterophyllin B (AB), Cycloheterophyllin (CY) and Moracin C (MC) were collected. Lipopolysaccharide (LPS)-stimulated inflammatory response in RAW264.7 macrophages were used in this study. Among these compounds, MC significantly inhibited LPS-activated reactive oxygen species (ROS) and nitric oxide (NO) release without marked cytotoxicity. Furthermore, MC effectively reduced LPS stimulated up-regulation of mRNA and protein expression of inducible nitric oxide synthase (iNOS), cyclooxygenase-2 (COX-2), and serval pro-inflammatory cytokines (interleukin-1β (IL-1β), interleukin-6 (IL-6) and tumor necrosis factor α (TNF-α)). Mechanistic studies revealed that the anti-inflammatory effect of MC was associated with the activation of the mitogen activated protein kinases (MAPKs) (including p38, ERK and JNK) and nuclear factor-κB (NF-κB) pathways, especially reducing the nuclear translocation of NF-κB p65 subunit as revealed by nuclear separation experiment and confocal microscopy. PMID:27463712

  2. Artocarpus altilis CG-901 alters critical nodes in the JH1-kinase domain of Janus kinase 2 affecting upstream JAK/STAT3 signaling.

    PubMed

    Nash, Oyekanmi; Omotuyi, Olaposi; Lee, Joonku; Kwon, Byoung-Mog; Ogbadu, Lucy

    2015-11-01

    As a key step in achieving low-cost, easily accessible anti-cancer therapy for low- and middle-income countries, we recently established the scientific basis for the folkloric use of Artocarpus altilis for the treatment of cancer by investigating the geranyl dihydrochalcone (CG-901) content and its interference with signal transducer and activator of transcription 3 (STAT3) phosphorylation and blockage of further downstream signaling. In the current study, the CG-901 upstream target was queried by chemical fingerprinting similarity assessment, semi-empirical (PM6ESCF) QMMM and molecular dynamics (MD) simulation. Moderate (∼0.4) to high (∼0.7) Tanimoto scores were found when the CG-901 scaffold was compared to ligands co-crystallized with Janus kinases (JAK) 1-3. High negative energy values were obtained when the CG-901 was treated semi-empirically (PM6ESCF) within the classical field of JAK (1-3). Multiple nanosecond MD simulations showed that CG-901 did not cause any large structural perturbations in the nucleotide-binding, activation and catalytic loops within the kinase (JH1) domain of JAK (1-3); however, it reduced the energy required to attain metastability along the path to energy minima conformation. In comparison to JAK1 and Apo-state JAK2, JAK2-bound CG-901 exhibited a highly re-organized key intra-domain protein network; indicating atomic level interference with inter-residue communication. In conclusion, CG-901 isolated from A. altilis represents a broad-spectrum JAK inhibitor, which may underlie the mechanism of STAT3 phosphorylation blockage. Graphical abstract Upper panel Janus kinase 2 upstream signaling pathway. Lower panel Apo-JAK2 (left) and CG-901-bound JAK2 (right). PMID:26442513

  3. In vitro studies to assess the antioxidative, radical scavenging and arginase inhibitory potentials of extracts from Artocarpus altilis, Ficus exasperate and Kigelia africana

    PubMed Central

    Akanni, Olubukola Oyebimpe; Owumi, Solomon Eduviere; Adaramoye, Oluwatosin Adekunle

    2014-01-01

    Objective To justify the use of Artocarpus altilis (A. altilis), Ficus exasperata (F. exasperata) and Kigelia africana (K. africana) in ethnomedicine for the treatment of several ailments and to evaluate the in vitro antioxidant, radical scavenging and arginase inhibitory potentials of these herbs and compared with catechin (Standard). Methods Antioxidant activities were determined by 2,2-diphenyl-1-picrylhydrazyl (DPPH), nitric oxide, hydrogen peroxide (H2O2) and hydroxyl (OH) radicals scavenging methods. The flavonoids and phenolics content, inhibition of arginase activity, Fe2+/ascorbate-induced lipid peroxidation (LPO) and reducing power were also determined. Results The A. altilis, F. exasperata and K. africana showed dose-dependent and significant scavenging of DPPH, H2O2 and OH radicals in vitro relative to catechin. The A. altilis and F. exasperata effectively scavenged DPPH radical with IC50 of 593 and 635 µg/mL and, OH radical with IC50 of 487 and 514 µg/mL, respectively. The DPPH and OH radicals scavenging activities followed the order A. altilis>F. exasperata>K. africana. In addition, A. altilis and F. exasperata significantly (P<0.05) inhibited LPO in a dose-dependent manner. The A. altilis extract had the most potent inhibitory activity against LPO with 79% relative to catechin (28%) at 750 µg/mL. The reducing power followed the order: A. altilis>Catechin>F. exasperata>K. africana at 1 000 µg/mL. The A. altilis at 500 and 750 µg/mL significantly (P<0.05) inhibited arginase activity by 63% and 67%, respectively. The flavonoids contents were found to be highest in A. altilis. Conclusions Extracts of A. altilis and F. exasperata are potent antioxidative agents with strong radical scavenging activity and inhibition of lipid peroxidation. PMID:25183137

  4. Abundance of Jackfruit ( Artocarpus heterophyllus) Affects Group Characteristics and Use of Space by Golden-Headed Lion Tamarins ( Leontopithecus chrysomelas) in Cabruca Agroforest

    NASA Astrophysics Data System (ADS)

    Oliveira, Leonardo C.; Neves, Leonardo G.; Raboy, Becky E.; Dietz, James M.

    2011-08-01

    Cabruca is an agroforest of cacao trees shaded by native forest trees. It is the predominant vegetation type throughout eastern part of the range of the golden-headed lion tamarins, Leontopithecus chrysomelas, an endangered primate endemic to Atlantic Forest. Understanding how lion tamarins use this agroforest is a conservation priority. To address this question, we documented the diet, home range size, group sizes and composition, density, number of litters and body condition of lion tamarins living in cabruca, and other habitats. Jackfruit, Artocarpus heterophyllus, was the most used species used by lion tamarins in cabruca and was widely available and used throughout the year. In cabruca, home range size was the smallest (22-28 ha) and density of lion tamarins was the highest (1.7 ind/ha) reported for the species. Group size averaged 7.4 individuals and was not significantly different among the vegetation types. In cabruca, groups produced one or two litters a year, and all litters were twins. Adult males in cabruca were significantly heavier than males in primary forest. Our study is the first to demonstrate that breeding groups of golden-headed lion tamarins can survive and reproduce entirely within cabruca agroforest. Jackfruit proved to be a keystone resource for lion tamarins in cabruca, and bromeliads were important as an animal prey foraging microhabitat. In cases where cabruca contains concentrated resources, such as jackfruit and bromeliads, lion tamarins may not only survive and reproduce but may fare better than in other forest types, at least for body condition and reproduction.

  5. 22. RW Meyer Sugar Mill: 18761889. Sorghum Pan. Manufactured by ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    22. RW Meyer Sugar Mill: 1876-1889. Sorghum Pan. Manufactured by John Nott & Co., Honolulu, Hawaii, 1878. View: Historical view, 1934, T.T. Waterman Collection, Hawaiian Sugar Planters' Association, Oahu, Hawaii. View looking toward east end of sorghum pan and interior of east end of the boiling house. Walls and final compartment of the sorghum pan are still intact. - R. W. Meyer Sugar Mill, State Route 47, Kualapuu, Maui County, HI

  6. Detection and Behavior of Pan Wakes in Saturn's A Ring

    NASA Technical Reports Server (NTRS)

    Horn, L. J.; Showalter, M. R.; Russell, C. T.

    1996-01-01

    Six previously unseen Pan wakes are found interior and exterior to the Encke gap in Saturn's A ring, one in the Voyager 2 photopolarimeter (PPS) stellar occultation data and five in the Voyager 1 radio science (RSS) Earth occultation data. Pan orbits at the center of the Encke gap and maintains it...The detection of Pan wakes at longitudes greater than 360(deg) demonstrates that wakes persist for much longer than originally hypothesized and may interact with one another.

  7. Ozone export from East Asia: The role of PAN

    NASA Astrophysics Data System (ADS)

    Jiang, Zhe; Worden, John R.; Payne, Vivienne H.; Zhu, Liye; Fischer, Emily; Walker, Thomas; Jones, Dylan B. A.

    2016-06-01

    Peroxyacetyl nitrate (PAN) is an important ozone (O3) precursor. The lifetime of PAN is approximately 1 month in the free troposphere, and this allows O3 production to occur in pollution plumes at intercontinental distances from its source. In this study we use the Goddard Earth Observing System (GEOS)-Chem global chemical transport model, new satellite measurements of PAN from the Aura Tropospheric Emission Spectrometer (TES), and data from the Arctic Research of the Composition of the Troposphere from Aircraft and Satellites (ARCTAS) field campaign over North America, to study the role of natural and anthropogenic Asian emissions on free tropospheric (900-400 hPa) PAN distributions and subsequent O3 production. Using the ARCTAS data with GEOS-Chem, we show that while GEOS-Chem is unbiased with respect to the aircraft data, TES version 7 PAN data are biased high for regions with surface temperatures colder than 285 K. However, GEOS-Chem and TES measurements provide a consistent representation (within 15% difference) of PAN abundance over East Asia. Because of the good agreement between model and observations, we use the GEOS-Chem model to evaluate the sources of PAN precursors and the effect of free tropospheric PAN on the export of O3 from Asia to North America. The GEOS-Chem model results show that the largest contributors to free tropospheric PAN over Asia and the northern Pacific are anthropogenic and soil NOx emissions. Biomass burning emissions have important contributions to free tropospheric PAN over northern Pacific (25% in April), while the contribution from lightning over northern Pacific is significant in July (40%). Strong springtime transport in April results in more export of free tropospheric PAN and O3 from East Asian emissions. This free tropospheric PAN contributes about 35% to the abundance of free tropospheric O3 over western North America in spring and 25% in summer.

  8. Global sources and significance of peroxyacetyl nitrate (PAN)

    NASA Astrophysics Data System (ADS)

    Fischer, E. V.; Jacob, D. J.; Yantosca, R. M.; Payer, M.

    2012-12-01

    Peroxyacetyl nitrate (PAN), formed in the atmospheric oxidation of non-methane volatile organic compounds (NMVOCs) serves as a thermally unstable reservoir for nitrogen oxide radicals (NO and NO2, collectively termed NOx). PAN permits NOx to impact the global distribution of the two most important atmospheric oxidants, ozone (O3) and the OH radical. PAN is also a critical channel through which climate-driven changes to the biosphere will affect atmospheric composition, notably through biogenic NMVOC emissions and fires. We use a 3-D chemical transport model (GEOS-Chem) constrained by a global suite of observations to evaluate the sources and significance of PAN. We quantify individual NMVOC and NOX contributions to PAN formation, and we identify where PAN has a significant impact on remote O3, OH and nitrogen deposition. We find that a simulation with improved budgets for key NMVOCs (ethane, acetaldehyde, ethanol, acetone and select aromatic species) is able to reproduce the main features of the global PAN distribution. We also show that the treatment of PAN formation in fires plays an important role in determining the global impact of this PAN source. The contributions of acetaldehyde, acetone and methylglyoxal to PAN formation reflect the sources and lifetimes of these immediate precursors. Acetaldehyde, which is emitted directly from biogenic sources and formed via hydrocarbon oxidation, is the most important peroxyacetyl radical precursor globally. Methylglyoxal, an oxidation product of both isoprene and aromatic species, is responsible for about a third of peroxyactyl radical formation in the lower troposphere. Isoprene oxidation products, other than methylglyoxal, are also significant for the global PAN budget. With updated (lower) photolysis yields, acetone is less important for PAN formation than previously thought. It is responsible for less peroxyactyl radical formation globally than each of the other immediate precursors below 200 hPa. Lightning

  9. Slow-blue PanSTARRS transients

    NASA Astrophysics Data System (ADS)

    MacLeod, Chelsea L.; Bruce, Alastair; Lawrence, Andy; Ward, Martin; Collinson, James; Elvis, Martin; Gezari, Suvi; Smartt, Steven; Smith, Ken; Wright, Darryl; Fraser, Morgan

    2015-01-01

    Photometric and spectroscopic monitoring of 50 blue, nuclear "transients" in PanSTARRS-1 has revealed different types of extremely variable AGN. The majority show a gradual brightening by ~2 mag from the SDSS observation a decade ago and may represent a new class of AGN microlensed by foreground galaxies. Spectra from the William Herschel Telescope identify these as z~1 AGN with atypical spectroscopic properties. We present an analysis of their photometric and spectroscopic variability in an effort to constrain the detailed structure of the source AGN.

  10. Studbook of Pan paniscus Schwarz, 1929.

    PubMed

    Guzen, A

    1975-01-01

    On the basis of information provided by various zoos who have, or used to have, Pan paniscus in their collections, as well as information in the International Zoo Yearbook or in the literature, an approximate outline has been given of our knowledge of this animal since the description given in 1929 by Schwarz. The status of species is preferred to that of subspecies. The question whether the bonobo should be regarded as a true dwarf form is considered. It is, however, emphasized that the majority of researchers - and for different reasons - consider the species to be the primate closest to man. PMID:1163394

  11. Insights into the Maize Pan-Genome and Pan-Transcriptome[W][OPEN

    PubMed Central

    Hirsch, Candice N.; Foerster, Jillian M.; Johnson, James M.; Sekhon, Rajandeep S.; Muttoni, German; Vaillancourt, Brieanne; Peñagaricano, Francisco; Lindquist, Erika; Pedraza, Mary Ann; Barry, Kerrie; de Leon, Natalia; Kaeppler, Shawn M.; Buell, C. Robin

    2014-01-01

    Genomes at the species level are dynamic, with genes present in every individual (core) and genes in a subset of individuals (dispensable) that collectively constitute the pan-genome. Using transcriptome sequencing of seedling RNA from 503 maize (Zea mays) inbred lines to characterize the maize pan-genome, we identified 8681 representative transcript assemblies (RTAs) with 16.4% expressed in all lines and 82.7% expressed in subsets of the lines. Interestingly, with linkage disequilibrium mapping, 76.7% of the RTAs with at least one single nucleotide polymorphism (SNP) could be mapped to a single genetic position, distributed primarily throughout the nonpericentromeric portion of the genome. Stepwise iterative clustering of RTAs suggests, within the context of the genotypes used in this study, that the maize genome is restricted and further sampling of seedling RNA within this germplasm base will result in minimal discovery. Genome-wide association studies based on SNPs and transcript abundance in the pan-genome revealed loci associated with the timing of the juvenile-to-adult vegetative and vegetative-to-reproductive developmental transitions, two traits important for fitness and adaptation. This study revealed the dynamic nature of the maize pan-genome and demonstrated that a substantial portion of variation may lie outside the single reference genome for a species. PMID:24488960

  12. Summertime distributions of peroxyacetyl nitrate (PAN) and peroxypropionyl nitrate (PPN) in Beijing: Understanding the sources and major sink of PAN

    NASA Astrophysics Data System (ADS)

    Zhang, Gen; Mu, Yujing; Zhou, Lingxi; Zhang, Chenglong; Zhang, Yuanyuan; Liu, Junfeng; Fang, Shuangxi; Yao, Bo

    2015-02-01

    Peroxyacetyl nitrate (PAN), a major secondary pollutant in the atmosphere, has received much concern for its particular importance in atmospheric chemistry and adverse effects on human and plants. Atmospheric PAN and PPN were measured by using a gas chromatograph equipped with electron capture detector (GC-ECD) from June to September 2010, and the source and major sink for PAN were firstly studied in Beijing. The distinct diurnal variations of PAN and PPN with maximum in the afternoon were observed, and the mean and maximum values were 2.61 ± 2.57 ppbv (N = 839) and 12.5 ppbv for PAN and 0.52 ± 0.38 ppbv (N = 152) and 2.16 ppbv for PPN during the measuring period, respectively. Good correlation (R = 0.85) between PAN and PPN with a slope (ΔPPN/ΔPAN) of 0.134 indicated that anthropogenic volatile organic compounds (AVOCs) dominated the photochemical formation of PANs in Beijing. Further, we found acetaldehyde was the predominant carbonyl precursor of PAN with the contribution of 59.7% to the total peroxyacetyl (PA) radical. Methyl glyoxal, methacrolein, acetone, methyl vinyl ketone, and biacetyl contributed 7.1%, 8.8%, 19.7%, 3.4%, and 1.3% to total PA radical, respectively. Anti-correlation between PAN concentrations and the NO/NO2 ratios was found during the whole investigating period. In addition, the amount of PAN lost by thermal decomposition (TPAN) accounted for remarkable fractions of PAN observed under high temperature during both daytime and nighttime.

  13. Pan-European catalogue of flood events

    NASA Astrophysics Data System (ADS)

    Parajka, Juraj; Mangini, Walter; Viglione, Alberto; Hundecha, Yeshewatesfa; Ceola, Serena

    2016-04-01

    There have been numerous extreme flood events observed in Europe in the past years. One of the way to improve our understanding about causing flood generation mechanisms is to analyse spatial and temporal variability of a large number of flood events. The aim of this study is to present a pan-European catalogue of flood events developed within the SWITCH-ON EU Project. The flood events are identified from daily discharge observations at 1315 stations listed in Global Runoff Data Centre database. The average length of discharge time-series for selected stations is 54 years. For each event, basin boundary and additional hydrological and weather characteristics are extracted. Hydrological characteristics are extracted from the pan-European HYPE model simulations. Precipitation, together with the corresponding proportions of rainfall and snowfall, snowmelt, and evapotranspiration are computed as total amounts between the event start date and event peak date. Soil moisture, soil moisture deficit, and basin accumulated snow water equivalent are computed for the event start date. Weather characteristics are derived from the weather circulation pattern catalogue developed within COST 733 Project. The results are generated in an open data access and tools framework which allows reproduction and extension of results to other regions. More information about the analysis and project are available at: http://www.water-switch-on.eu/lab.html.

  14. Atmospheric peroxyacetyl nitrate (PAN): a global budget and source attribution

    NASA Astrophysics Data System (ADS)

    Fischer, E. V.; Jacob, D. J.; Yantosca, R. M.; Sulprizio, M. P.; Millet, D. B.; Mao, J.; Paulot, F.; Singh, H. B.; Roiger, A.-E.; Ries, L.; Talbot, R. W.; Dzepina, K.; Pandey Deolal, S.

    2013-10-01

    Peroxyacetyl nitrate (PAN) formed in the atmospheric oxidation of non-methane volatile organic compounds (NMVOCs), is the principal tropospheric reservoir for nitrogen oxide radicals (NOx = NO + NO2). PAN enables the transport and release of NOx to the remote troposphere with major implications for the global distributions of ozone and OH, the main tropospheric oxidants. Simulation of PAN is a challenge for global models because of the dependence of PAN on vertical transport as well as complex and uncertain NMVOC sources and chemistry. Here we use an improved representation of NMVOCs in a global 3-D chemical transport model (GEOS-Chem) and show that it can simulate PAN observations from aircraft campaigns worldwide. The immediate carbonyl precursors for PAN formation include acetaldehyde (44% of the global source), methylglyoxal (30%), acetone (7%), and a suite of other isoprene and terpene oxidation products (19%). A diversity of NMVOC emissions is responsible for PAN formation globally including isoprene (37%) and alkanes (14%). Anthropogenic sources are dominant in the extratropical Northern Hemisphere outside the growing season. Open fires appear to play little role except at high northern latitudes in spring, although results are very sensitive to plume chemistry and plume rise. Lightning NOx is the dominant contributor to the observed PAN maximum in the free troposphere over the South Atlantic.

  15. Atmospheric peroxyacetyl nitrate (PAN): a global budget and source attribution

    NASA Astrophysics Data System (ADS)

    Fischer, E. V.; Jacob, D. J.; Yantosca, R. M.; Sulprizio, M. P.; Millet, D. B.; Mao, J.; Paulot, F.; Singh, H. B.; Roiger, A.; Ries, L.; Talbot, R. W.; Dzepina, K.; Pandey Deolal, S.

    2014-03-01

    Peroxyacetyl nitrate (PAN) formed in the atmospheric oxidation of non-methane volatile organic compounds (NMVOCs) is the principal tropospheric reservoir for nitrogen oxide radicals (NOx = NO + NO2). PAN enables the transport and release of NOx to the remote troposphere with major implications for the global distributions of ozone and OH, the main tropospheric oxidants. Simulation of PAN is a challenge for global models because of the dependence of PAN on vertical transport as well as complex and uncertain NMVOC sources and chemistry. Here we use an improved representation of NMVOCs in a global 3-D chemical transport model (GEOS-Chem) and show that it can simulate PAN observations from aircraft campaigns worldwide. The immediate carbonyl precursors for PAN formation include acetaldehyde (44% of the global source), methylglyoxal (30%), acetone (7%), and a suite of other isoprene and terpene oxidation products (19%). A diversity of NMVOC emissions is responsible for PAN formation globally including isoprene (37%) and alkanes (14%). Anthropogenic sources are dominant in the extratropical Northern Hemisphere outside the growing season. Open fires appear to play little role except at high northern latitudes in spring, although results are very sensitive to plume chemistry and plume rise. Lightning NOx is the dominant contributor to the observed PAN maximum in the free troposphere over the South Atlantic.

  16. Pan-ebolavirus and Pan-filovirus Mouse Monoclonal Antibodies: Protection against Ebola and Sudan Viruses

    PubMed Central

    Holtsberg, Frederick W.; Shulenin, Sergey; Vu, Hong; Howell, Katie A.; Patel, Sonal J.; Gunn, Bronwyn; Karim, Marcus; Lai, Jonathan R.; Frei, Julia C.; Nyakatura, Elisabeth K.; Zeitlin, Larry; Douglas, Robin; Fusco, Marnie L.; Froude, Jeffrey W.; Saphire, Erica Ollmann; Herbert, Andrew S.; Wirchnianski, Ariel S.; Lear-Rooney, Calli M.; Alter, Galit; Dye, John M.; Glass, Pamela J.; Warfield, Kelly L.

    2015-01-01

    ABSTRACT The unprecedented 2014-2015 Ebola virus disease (EVD) outbreak in West Africa has highlighted the need for effective therapeutics against filoviruses. Monoclonal antibody (MAb) cocktails have shown great potential as EVD therapeutics; however, the existing protective MAbs are virus species specific. Here we report the development of pan-ebolavirus and pan-filovirus antibodies generated by repeated immunization of mice with filovirus glycoproteins engineered to drive the B cell responses toward conserved epitopes. Multiple pan-ebolavirus antibodies were identified that react to the Ebola, Sudan, Bundibugyo, and Reston viruses. A pan-filovirus antibody that was reactive to the receptor binding regions of all filovirus glycoproteins was also identified. Significant postexposure efficacy of several MAbs, including a novel antibody cocktail, was demonstrated. For the first time, we report cross-neutralization and in vivo protection against two highly divergent filovirus species, i.e., Ebola virus and Sudan virus, with a single antibody. Competition studies indicate that this antibody targets a previously unrecognized conserved neutralizing epitope that involves the glycan cap. Mechanistic studies indicated that, besides neutralization, innate immune cell effector functions may play a role in the antiviral activity of the antibodies. Our findings further suggest critical novel epitopes that can be utilized to design effective cocktails for broad protection against multiple filovirus species. IMPORTANCE Filoviruses represent a major public health threat in Africa and an emerging global concern. Largely driven by the U.S. biodefense funding programs and reinforced by the 2014 outbreaks, current immunotherapeutics are primarily focused on a single filovirus species called Ebola virus (EBOV) (formerly Zaire Ebola virus). However, other filoviruses including Sudan, Bundibugyo, and Marburg viruses have caused human outbreaks with mortality rates as high as 90%. Thus

  17. 3. RW Meyer Sugar Mill: 18761889. Sorghum pan and boiling ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    3. RW Meyer Sugar Mill: 1876-1889. Sorghum pan and boiling range flue. Manufactured by John Nott & Co., Honolulu, Hawaii, 1878. View: South side of sorghum pan and boiling range flue. In the sorghum pan heat was applied to the cane juice to clarify it, evaporate its water content, and concentrate the sugar crystals. Hot gasses moved through the flue underneath the entire copper bottom of the sorghum pan from the furnace (east) end to the smokestack (west) end of the boiling range. The sorghum pan sides are of redwood. The flue is built of fire-brick, masonry, and portland cement. - R. W. Meyer Sugar Mill, State Route 47, Kualapuu, Maui County, HI

  18. Clinical Evaluation of Youth with Pediatric Acute-Onset Neuropsychiatric Syndrome (PANS): Recommendations from the 2013 PANS Consensus Conference

    PubMed Central

    Frankovich, Jennifer; Cooperstock, Michael; Cunningham, Madeleine W.; Latimer, M. Elizabeth; Murphy, Tanya K.; Pasternack, Mark; Thienemann, Margo; Williams, Kyle; Walter, Jolan; Swedo, Susan E.

    2015-01-01

    Abstract On May 23 and 24, 2013, the First PANS Consensus Conference was convened at Stanford University, calling together a geographically diverse group of clinicians and researchers from complementary fields of pediatrics: General and developmental pediatrics, infectious diseases, immunology, rheumatology, neurology, and child psychiatry. Participants were academicians with clinical and research interests in pediatric autoimmune neuropsychiatric disorder associated with streptococcus (PANDAS) in youth, and the larger category of pediatric acute-onset neuropsychiatric syndrome (PANS). The goals were to clarify the diagnostic boundaries of PANS, to develop systematic strategies for evaluation of suspected PANS cases, and to set forth the most urgently needed studies in this field. Presented here is a consensus statement proposing recommendations for the diagnostic evaluation of youth presenting with PANS. PMID:25325534

  19. Public Release of Pan-STARRS Data

    NASA Astrophysics Data System (ADS)

    Flewelling, Heather; Consortium, panstarrs

    2015-08-01

    Pan-STARRS 1 is a 1.8 meter survey telescope, located on Haleakala, Hawaii, with a 1.4 Gigapixel camera, a 7 square degree field of view, and 5 filters (g,r,i,z,y). The public release of data, which is available to everyone, consists of 4 years of data taken between May 2010 and April 2014. Two of the surveys available in the public release are the 3pi survey and the Medium Deep (MD) survey. The 3pi survey has roughly 60 epochs (12 per filter) covering 3/4 of the sky and everything north of -30 degrees declination. The MD survey consists of 10 fields, observed in a couple of filters each night, usually 8 exposures per filter per field, for about 4000 epochs per MD field. The available data product are accessed through the “Postage Stamp Server” and through the Published Science Products Subsystem (PSPS), both of these are available through the Pan-STARRS Science Interface (PSI). The Postage Stamp Server provides images and catalogs for different stages of processing on single exposures, stack images, difference images, and forced photometry. The PSPS is a SQLServer database that can be queried via script or web interface, with a database for each MD field and a large database for the 3pi survey. This database has relative photometry and astrometry and object associations, making it easy to do searches across the entire sky as well as tools to generate lightcurves of individual objects as a function of time.

  20. Heterochrony and geometric morphometrics: a comparison of cranial growth in Pan paniscus versus Pan troglodytes.

    PubMed

    Mitteroecker, Philipp; Gunz, Philipp; Bookstein, Fred L

    2005-01-01

    Heterochrony, the classic framework in which to study ontogeny and phylogeny, in essence relies on a univariate concept of shape. Though principal component (PC) plots of multivariate shape data seem to resemble classical bivariate allometric plots, the language of heterochrony cannot be translated directly into general multivariate methodology. We simulate idealized multivariate ontogenetic trajectories and explore their appearance in PC plots of shape space and size-shape space. Only if the trajectories of two related species lie along exactly the same path in shape space can the classic terminology of heterochrony apply and pure dissociation of size change against shape change be detected. Regional heterochrony--the variation of apparent heterochrony by region--implies a dissociation of local growth fields and cannot be identified in an overall PC analysis. We exemplify a geometric morphometric approach to these issues using adult and subadult crania of 48 Pan paniscus and 47 Pan troglodytes specimens. On each specimen, we digitized 47 landmarks and 144 semilandmarks on facial curves and the external neurocranial surface. We reject the hypothesis of global heterochrony in the cranium of Pan as well as regional heterochrony for the lower face, the upper face, and the neurocranium. PMID:15876197

  1. Brief communication: dental development timing in captive Pan paniscus with comparisons to Pan troglodytes.

    PubMed

    Bolter, Debra R; Zihlman, Adrienne L

    2011-08-01

    Dental eruption provides markers of growth and is one component of a chimpanzee's physical development. Dental markers help characterize transitions between life stages, e.g., infant to juvenile. Most of what we know about the timing of development in chimpanzees derives from Pan troglodytes. Much less is known about the sister species, Pan paniscus, with few in captivity and a restricted wild range in central Africa. Here we report on the dental eruption timing for female captive P. paniscus (n = 5) from the Milwaukee and San Diego Zoos whose ages are known and range from birth to age 8.54 years. Some observations were recorded in zoo records on the gingiva during life; others were made at death on the gingiva and on the skeleton. At birth, P. paniscus infants have no teeth emerged. By 0.83 years, all but the deciduous second molars (dm(2) ) (when both upper and lower dentitions are referenced collectively, no super or subscript notation is used) and canines (dc) are emerged. For permanent teeth, results show a sequence polymorphism for an early P4 eruption, not previously described for P. paniscus. Comparisons between P. paniscus and P. troglodytes document absolute timing differences of emergence in upper second incisors (I(2) ), and upper and lower canines (C) and third molars (M3). The genus Pan encompasses variability in growth not previously recognized. These preliminary data suggest that physical growth in captive P. paniscus may be accelerated, a general pattern found in captive P. troglodytes. PMID:21541924

  2. Modeling monthly pan evaporations using fuzzy genetic approach

    NASA Astrophysics Data System (ADS)

    Kişi, Özgür; Tombul, Mustafa

    2013-01-01

    SummaryThis study investigates the ability of fuzzy genetic (FG) approach in estimation of monthly pan evaporations. Various monthly climatic data, that are, solar radiation, air temperature, relative humidity and wind speed from two stations, Antalya and Mersin, in Mediterranean Region of Turkey, were used as inputs to the FG technique so as to estimate monthly pan evaporations. In the first part of the study, FG models were compared with neuro-fuzzy (ANFIS), artificial neural networks (ANNs) and Stephens-Stewart (SS) methods in estimating pan evaporations of Antalya and Mersin stations, separately. Comparison of the models revealed that the FG models generally performed better than the ANFIS, ANN and SS models. In the second part of the study, models were compared to each other in two different applications. In the first application the input data of Antalya Station were used as inputs to the models to estimate pan evaporation data of Mersin Station. The pan evaporation data of Mersin Station were estimated using the input data of Antalya and Mersin stations in the second application. Comparison results indicated that the FG models performed better than the ANFIS and ANN models. Comparison of the accuracy of the applied models in estimating total pan evaporations showed that the FG model provided the closest estimate. It was concluded that monthly pan evaporations could be successfully estimated by the FG approach.

  3. The STM4195 Gene Product (PanS) Transports Coenzyme A Precursors in Salmonella enterica

    PubMed Central

    Ernst, Dustin C.

    2015-01-01

    ABSTRACT Coenzyme A (CoA) is a ubiquitous coenzyme involved in fundamental metabolic processes. CoA is synthesized from pantothenic acid by a pathway that is largely conserved among bacteria and eukaryotes and consists of five enzymatic steps. While higher organisms, including humans, must scavenge pantothenate from the environment, most bacteria and plants are capable of de novo pantothenate biosynthesis. In Salmonella enterica, precursors to pantothenate can be salvaged, but subsequent intermediates are not transported due to their phosphorylated state, and thus the pathway from pantothenate to CoA is considered essential. Genetic analyses identified the STM4195 gene product of Salmonella enterica serovar Typhimurium as a transporter of pantothenate precursors, ketopantoate and pantoate and, to a lesser extent, pantothenate. Further results indicated that STM4195 transports a product of CoA degradation that serves as a precursor to CoA and enters the biosynthetic pathway between PanC and CoaBC (dfp). The relevant CoA derivative is distinguishable from pantothenate, pantetheine, and pantethine and has spectral properties indicating the adenine moiety of CoA is intact. Taken together, the results presented here provide evidence of a transport mechanism for the uptake of ketopantoate, pantoate, and pantothenate and demonstrate a role for STM4195 in the salvage of a CoA derivative of unknown structure. The STM4195 gene is renamed panS to reflect participation in pantothenate salvage that was uncovered herein. IMPORTANCE This manuscript describes a transporter for two pantothenate precursors in addition to the existence and transport of a salvageable coenzyme A (CoA) derivative. Specifically, these studies defined a function for an STM protein in S. enterica that was distinct from the annotated role and led to its designation as PanS (pantothenate salvage). The presence of a salvageable CoA derivative and a transporter for it suggests the possibility that this

  4. Theoretical investigation on the bond dissociation enthalpies of phenolic compounds extracted from Artocarpus altilis using ONIOM(ROB3LYP/6-311++G(2df,2p):PM6) method

    NASA Astrophysics Data System (ADS)

    Thong, Nguyen Minh; Duong, Tran; Pham, Linh Thuy; Nam, Pham Cam

    2014-10-01

    Theoretical calculations have been performed to predict the antioxidant property of phenolic compounds extracted from Artocarpus altilis. The Osbnd H bond dissociation enthalpy (BDE), ionization energy (IE), and proton dissociation enthalpy (PDE) of the phenolic compounds have been computed. The ONIOM(ROB3LYP/6-311++G(2df,2p):PM6) method is able to provide reliable evaluation for the BDE(Osbnd H) in phenolic compounds. An important property of antioxidants is determined via the BDE(Osbnd H) of those compounds extracted from A. altilis. Based on the BDE(Osbnd H), compound 12 is considered as a potential antioxidant with the estimated BDE value of 77.3 kcal/mol in the gas phase.

  5. About rats and jackfruit trees: modeling the carrying capacity of a Brazilian Atlantic Forest spiny-rat Trinomys dimidiatus (Günther, 1877) - Rodentia, Echimyidae - population with varying jackfruit tree (Artocarpus heterophyllus L.) abundances.

    PubMed

    Mello, J H F; Moulton, T P; Raíces, D S L; Bergallo, H G

    2015-01-01

    We carried out a six-year study aimed at evaluating if and how a Brazilian Atlantic Forest small mammal community responded to the presence of the invasive exotic species Artocarpus heterophyllus, the jackfruit tree. In the surroundings of Vila Dois Rios, Ilha Grande, RJ, 18 grids were established, 10 where the jackfruit tree was present and eight were it was absent. Previous results indicated that the composition and abundance of this small mammal community were altered by the presence and density of A. heterophyllus. One observed effect was the increased population size of the spiny-rat Trinomys dimidiatus within the grids where the jackfruit trees were present. Therefore we decided to create a mathematical model for this species, based on the Verhulst-Pearl logistic equation. Our objectives were i) to calculate the carrying capacity K based on real data of the involved species and the environment; ii) propose and evaluate a mathematical model to estimate the population size of T. dimidiatus based on the monthly seed production of jackfruit tree, Artocarpus heterophyllus and iii) determinate the minimum jackfruit tree seed production to maintain at least two T. dimidiatus individuals in one study grid. Our results indicated that the predicted values by the model for the carrying capacity K were significantly correlated with real data. The best fit was found considering 20~35% energy transfer efficiency between trophic levels. Within the scope of assumed premises, our model showed itself to be an adequate simulator for Trinomys dimidiatus populations where the invasive jackfruit tree is present. PMID:25945639

  6. 7 CFR 58.217 - Evaporators and/or vacuum pans.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... 7 Agriculture 3 2010-01-01 2010-01-01 false Evaporators and/or vacuum pans. 58.217 Section 58.217....217 Evaporators and/or vacuum pans. Evaporators or vacuum pans or both, with open type condensers... Sanitary Standards for Milk and Milk Products Evaporators and Vacuum Pans. When enclosed type...

  7. 7 CFR 58.217 - Evaporators and/or vacuum pans.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... 7 Agriculture 3 2011-01-01 2011-01-01 false Evaporators and/or vacuum pans. 58.217 Section 58.217....217 Evaporators and/or vacuum pans. Evaporators or vacuum pans or both, with open type condensers... Sanitary Standards for Milk and Milk Products Evaporators and Vacuum Pans. When enclosed type...

  8. 7 CFR 58.217 - Evaporators and/or vacuum pans.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... 7 Agriculture 3 2012-01-01 2012-01-01 false Evaporators and/or vacuum pans. 58.217 Section 58.217....217 Evaporators and/or vacuum pans. Evaporators or vacuum pans or both, with open type condensers... Sanitary Standards for Milk and Milk Products Evaporators and Vacuum Pans. When enclosed type...

  9. 7 CFR 58.217 - Evaporators and/or vacuum pans.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... 7 Agriculture 3 2014-01-01 2014-01-01 false Evaporators and/or vacuum pans. 58.217 Section 58.217....217 Evaporators and/or vacuum pans. Evaporators or vacuum pans or both, with open type condensers... Sanitary Standards for Milk and Milk Products Evaporators and Vacuum Pans. When enclosed type...

  10. 7 CFR 58.217 - Evaporators and/or vacuum pans.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... 7 Agriculture 3 2013-01-01 2013-01-01 false Evaporators and/or vacuum pans. 58.217 Section 58.217....217 Evaporators and/or vacuum pans. Evaporators or vacuum pans or both, with open type condensers... Sanitary Standards for Milk and Milk Products Evaporators and Vacuum Pans. When enclosed type...

  11. 12. Level 6 gringing pans, pump above dorr thickener. View ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    12. Level 6 gringing pans, pump above dorr thickener. View to west. - Kennecott Copper Corporation, Concentration Mill, On Copper River & Northwestern Railroad, Kennicott, Valdez-Cordova Census Area, AK

  12. Improvements in analysis of atmospheric peroxyacetyl nitrate (PAN)

    NASA Astrophysics Data System (ADS)

    Helmig, Detlev; Müller, Josef; Klein, Werner

    Common analytical techniques for PAN determination were modified in order to obtain a sensitive and automatic analysis system. PAN was synthesized by nitration of peracetic acid in hexane, The PAN/hexane solution was purified by water extraction. The quantification was performed determining acetate or nitrite by ion chromatography following alkaline hydrolysis. The validity was checked by liquid i.r. speetroscopy. NMR studies revealed a singulet signal at 2.27 ppm. The precision and sensitivity of the gas Chromatographic analyses were improved by the use of wide bore capillary columns coated with Carbowax 400. The developed system enables automatic and continuous PAN measurements at a 10 min sampling sequence and with a detection limit of 50 ppt.

  13. Recurrent plantar ulceration following pan metatarsal head resection.

    PubMed

    Petrov, O; Pfeifer, M; Flood, M; Chagares, W; Daniele, C

    1996-01-01

    Although the pan metatarsal head resection, since it was originally described and performed by Hoffman in 1911, has proven to be an effective and viable procedure in treating many forefoot deformities, it is not without its own complications. The authors provide an historical perspective of the pan metatarsal head resection, a discussion on the complication of recurrent plantar ulceration after the pan metatarsal head resection, and a review of their own experience with this procedure. A retrospective review was performed of all patients having undergone pan metatarsal resections between August 1980 and April 1993. Twenty procedures were performed on 12 patients with diabetic neuropathy, and 21 procedures were performed on 15 patients with rheumatoid arthritis. The incidence of recurrent plantar ulceration after surgical correction was 25% and 28%, respectively. All 27 patients underwent primary healing. The authors, therefore, conclude that the complication of recurrent plantar ulceration after this procedure is a very likely and distinct possibility. PMID:8986897

  14. Afro-Americans and Early Pan-Africanism

    ERIC Educational Resources Information Center

    Contee, Clarence G.

    1970-01-01

    History of the Pan-African movement, the roles of W.E.B.Du Bois and Marcus Garvey in the movement activities, and the shift to African based leadership of the movement in the 1940's are discussed. (KG)

  15. 15. RW Meyer Sugar Mill: 18761889. Sorghum pan and boiling ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    15. RW Meyer Sugar Mill: 1876-1889. Sorghum pan and boiling range flue. Manufactured by John Nott & Co., Honolulu, Hawaii, 1878. View: North side of sorghum pan and boiling range flue, with furnace-end in background. In the sorghum pan heat was applied to the cane juice to clarify it, evaporate its water content, and concentrate the sugar crystals. Hot gasses moved through the flue underneath the entire copper bottom of the sorghum pan from the furnace end (in background) to the smokestack end (in foreground). After the hot cane juice moved through the separate compartments until it reached the final compartment (now missing two sides) where it was drawn out from the copper lip in the corner. - R. W. Meyer Sugar Mill, State Route 47, Kualapuu, Maui County, HI

  16. Comparing maternal styles in bonobos (Pan paniscus) and chimpanzees (Pan troglodytes).

    PubMed

    De Lathouwers, Mieke; Van Elsacker, Linda

    2004-12-01

    Studies on Cercopithecine primate maternal styles, using factor analysis on a set of maternal behaviors, commonly render two factors that describe separate dimensions of maternal behavior: protectiveness and rejection. The aims of this study were to 1) investigate whether this method for determining maternal styles in Cercopithecine species can be applied to bonobos (Pan paniscus) and chimpanzees (Pan troglodytes), 2) determine whether they follow the same pattern, and 3) assess whether species differences in maternal style are apparent. We performed a factor analysis on nine maternal behaviors using data on eight mother-infant pairs of each species. This resulted in three factors: protectiveness, distance, and refusal. Protectiveness is positively correlated with time spent in ventral contact, making contact, approaching, and restraining. Distance is positively related with breaking contact and leaving. Refusal is positively correlated with rejecting and nipple-rejecting. The pattern of protectiveness corresponds with the pattern found in Cercopithecine species, suggesting a high consistency of this dimension across species and higher taxa. The retention of the other two factors indicates that in the Pan species, breaking contact and leaving represent another dimension, apart from rejecting and nipple-rejecting, which usually fall under one dimension in Cercopithecine species. An interspecific comparison of the factor scores for each dimension of maternal behavior reveals that, on average, bonobos and chimpanzees score equally on protectiveness. Scores on distance increase positively with infant age in chimpanzees, and negatively in bonobos, and on average bonobos have higher scores on refusal. These interspecies differences in maternal style are discussed in the light of interspecies differences in infant development, infant vulnerability to aggression, interbirth intervals, and female sociality. PMID:15580581

  17. Pan-STARRS-1 Medium Deep Survey

    NASA Astrophysics Data System (ADS)

    Huber, Mark

    2015-08-01

    The Panoramic Survey Telescope And Rapid Response System-1 (Pan-STARRS-1, PS1) has been in full science operation since Spring 2010 and concluded the observing program for the PS1 Science Consortium (PS1SC) in early 2014. The Medium Deep Survey (MDS) component of the program regularly visited 10 fields (~7 sq. deg. each) with significant multi-wavelength overlap from previous and concurrent surveys (e.g. SDSS, DEEP2, CDFS, COSMOS, GALEX) for 25% of the total time allocation. The cadence generally includes the g,r,i,z filters for a MDS field every 3 days over the 6-8 month season the field is visible, with the y filter done primarily during bright time. The nightly stacks of eight exposures typically reach depths of r,i~23.5 mag. Development work continued to improve the single exposure processing though to deep stacks during the transient event discovery and other science consortium programs over the course of the survey, the culmination of those improvements being applied in a more uniformly reprocessed dataset used for the public data release. A summary of the MDS public data release products will be presented.For details on PS1 and the Science Collaboration, visit http://ps1sc.org/

  18. Pan-STARRS-1 Medium Deep Survey

    NASA Astrophysics Data System (ADS)

    Huber, Mark; PS1-IPP Team, PS1 Science Consortium

    2015-01-01

    The Panoramic Survey Telescope And Rapid Response System-1 (Pan-STARRS-1, PS1) has been in full operation since Spring 2010 and concluded the PS1 Science Consortium (PS1SC) observational program in early 2014. The Medium Deep Survey (MDS) component of the program, allocated 25% of the time, regularly visited 10 fields (~7 sq. deg. each) with significant multi-wavelength overlap from previous and concurrent surveys (e.g. SDSS, DEEP2, CDFS, COSMOS, GALEX). The cadence generally includes the g,r,i,z filters for a MDS field every 3 days with a nightly stack depth of r,i~23.5 mag and the y filter primarily during bright time over the 6-8 month season the field is visible. While regularly producing data for the transient event discovery and science consortium programs, development work continued to improve the single exposures though production of deep stacks for reprocessing into the final and public release. The data products, to be publicly available after the post-observing proprietary period, will be summarized.For details on PS1 and the Science Collaboration, visit http://ps1sc.org/

  19. Area-to-point regression kriging for pan-sharpening

    NASA Astrophysics Data System (ADS)

    Wang, Qunming; Shi, Wenzhong; Atkinson, Peter M.

    2016-04-01

    Pan-sharpening is a technique to combine the fine spatial resolution panchromatic (PAN) band with the coarse spatial resolution multispectral bands of the same satellite to create a fine spatial resolution multispectral image. In this paper, area-to-point regression kriging (ATPRK) is proposed for pan-sharpening. ATPRK considers the PAN band as the covariate. Moreover, ATPRK is extended with a local approach, called adaptive ATPRK (AATPRK), which fits a regression model using a local, non-stationary scheme such that the regression coefficients change across the image. The two geostatistical approaches, ATPRK and AATPRK, were compared to the 13 state-of-the-art pan-sharpening approaches summarized in Vivone et al. (2015) in experiments on three separate datasets. ATPRK and AATPRK produced more accurate pan-sharpened images than the 13 benchmark algorithms in all three experiments. Unlike the benchmark algorithms, the two geostatistical solutions precisely preserved the spectral properties of the original coarse data. Furthermore, ATPRK can be enhanced by a local scheme in AATRPK, in cases where the residuals from a global regression model are such that their spatial character varies locally.

  20. BPGA- an ultra-fast pan-genome analysis pipeline.

    PubMed

    Chaudhari, Narendrakumar M; Gupta, Vinod Kumar; Dutta, Chitra

    2016-01-01

    Recent advances in ultra-high-throughput sequencing technology and metagenomics have led to a paradigm shift in microbial genomics from few genome comparisons to large-scale pan-genome studies at different scales of phylogenetic resolution. Pan-genome studies provide a framework for estimating the genomic diversity of the dataset, determining core (conserved), accessory (dispensable) and unique (strain-specific) gene pool of a species, tracing horizontal gene-flux across strains and providing insight into species evolution. The existing pan genome software tools suffer from various limitations like limited datasets, difficult installation/requirements, inadequate functional features etc. Here we present an ultra-fast computational pipeline BPGA (Bacterial Pan Genome Analysis tool) with seven functional modules. In addition to the routine pan genome analyses, BPGA introduces a number of novel features for downstream analyses like core/pan/MLST (Multi Locus Sequence Typing) phylogeny, exclusive presence/absence of genes in specific strains, subset analysis, atypical G + C content analysis and KEGG &COG mapping of core, accessory and unique genes. Other notable features include minimum running prerequisites, freedom to select the gene clustering method, ultra-fast execution, user friendly command line interface and high-quality graphics outputs. The performance of BPGA has been evaluated using a dataset of complete genome sequences of 28 Streptococcus pyogenes strains. PMID:27071527

  1. Migration of ATLAS PanDA to CERN

    NASA Astrophysics Data System (ADS)

    Stewart, Graeme Andrew; Klimentov, Alexei; Koblitz, Birger; Lamanna, Massimo; Maeno, Tadashi; Nevski, Pavel; Nowak, Marcin; Emanuel De Castro Faria Salgado, Pedro; Wenaus, Torre

    2010-04-01

    The ATLAS Production and Distributed Analysis System (PanDA) is a key component of the ATLAS distributed computing infrastructure. All ATLAS production jobs, and a substantial amount of user and group analysis jobs, pass through the PanDA system, which manages their execution on the grid. PanDA also plays a key role in production task definition and the data set replication request system. PanDA has recently been migrated from Brookhaven National Laboratory (BNL) to the European Organization for Nuclear Research (CERN), a process we describe here. We discuss how the new infrastructure for PanDA, which relies heavily on services provided by CERN IT, was introduced in order to make the service as reliable as possible and to allow it to be scaled to ATLAS's increasing need for distributed computing. The migration involved changing the backend database for PanDA from MySQL to Oracle, which impacted upon the database schemas. The process by which the client code was optimised for the new database backend is discussed. We describe the procedure by which the new database infrastructure was tested and commissioned for production use. Operations during the migration had to be planned carefully to minimise disruption to ongoing ATLAS offline computing. All parts of the migration were fully tested before commissioning the new infrastructure and the gradual migration of computing resources to the new system allowed any problems of scaling to be addressed.

  2. BPGA- an ultra-fast pan-genome analysis pipeline

    PubMed Central

    Chaudhari, Narendrakumar M.; Gupta, Vinod Kumar; Dutta, Chitra

    2016-01-01

    Recent advances in ultra-high-throughput sequencing technology and metagenomics have led to a paradigm shift in microbial genomics from few genome comparisons to large-scale pan-genome studies at different scales of phylogenetic resolution. Pan-genome studies provide a framework for estimating the genomic diversity of the dataset, determining core (conserved), accessory (dispensable) and unique (strain-specific) gene pool of a species, tracing horizontal gene-flux across strains and providing insight into species evolution. The existing pan genome software tools suffer from various limitations like limited datasets, difficult installation/requirements, inadequate functional features etc. Here we present an ultra-fast computational pipeline BPGA (Bacterial Pan Genome Analysis tool) with seven functional modules. In addition to the routine pan genome analyses, BPGA introduces a number of novel features for downstream analyses like core/pan/MLST (Multi Locus Sequence Typing) phylogeny, exclusive presence/absence of genes in specific strains, subset analysis, atypical G + C content analysis and KEGG & COG mapping of core, accessory and unique genes. Other notable features include minimum running prerequisites, freedom to select the gene clustering method, ultra-fast execution, user friendly command line interface and high-quality graphics outputs. The performance of BPGA has been evaluated using a dataset of complete genome sequences of 28 Streptococcus pyogenes strains. PMID:27071527

  3. Evolutionary neural networks for monthly pan evaporation modeling

    NASA Astrophysics Data System (ADS)

    Kişi, Özgür

    2013-08-01

    Estimating pan evaporation is very important for monitoring, survey and management of water resources. This study proposes the application evolutionary neural networks (ENN) for modeling monthly pan evaporations. Solar radiation, air temperature, relative humidity, wind speed and pan evaporation data from two stations, Antalya and Mersin, in Mediterranean Region of Turkey are used in the study. In the first part of the study, ENN models are compared with those of the fuzzy genetic (FG), neuro-fuzzy (ANFIS), artificial neural networks (ANN) and Stephens-Stewart (SS) methods in estimating pan evaporations of Antalya and Mersin stations, separately. Comparison results indicate that the ENN models generally perform better than the FG, ANFIS, ANN and SS models. In the second part of the study, models are compared with each other in estimating Mersin’s pan evaporations using input data of both stations. Results reveal that the ENN models performed better than the FG, ANFIS and ANN models. It was concluded that monthly pan evaporations can be successfully estimated by the ENN method. The performance of the ENN model with full weather data as inputs presents 0.749 and 0.759 mm of mean absolute error for the Antalya and Mersin stations, respectively.

  4. Artocarpus communis Forst. root-bark aqueous extract- and streptozotocin-induced ultrastructural and metabolic changes in hepatic tissues of Wistar rats.

    PubMed

    Adewole, Stephen O; Ojewole, John A O

    2007-01-01

    Decoctions and infusions of Artocarpus communis (Forst.) (family: Moraceae) root-bark are commonly used traditionally among the Yoruba-speaking people of Western Nigeria as folk remedies for the management, control and/or treatment of an array of human diseases, including type 2, adult-onset diabetes mellitus. Although numerous bioactive flavonoids have been isolated from the roots, stem-bark and leaves of A. communis, to the best of our knowledge, the effects of the plant's root-bark extract on animal model of diabetes mellitus and on liver tissues have hitherto, not been reported in the biomedical literature. In view of this, the present study was undertaken to investigate the glycaemic effect of, and hepatic tissue ultrastructural, morphological and metabolic changes induced by A. communis root-bark aqueous extract (ACE) in Wistar rats. The ultrastructural, morphological and metabolic effects of ACE have been compared with those induced by streptozotocin (STZ) in rat experimental paradigms. Four groups (A, B, C and D) of Wistar rats, each group containing 10 rats, were used. Diabetes mellitus was induced in the diabetic groups B and C animals by intraperitoneal injections of STZ (75 mg/kg body weight), while group A rats received A. communis root-bark aqueous extract (ACE, 100 mg/kg body weight, i.p.) alone. Control group D rats received distilled water in quantities equivalent to the volume of ACE administered intraperitoneally. The rats in group C were additionally treated with ACE (100 mg/kg body weight i. p.) daily from day 3 to day 10 after STZ treatment. Hepatic glucokinase, hexokinase, glutamate dehydrogenase, succinate dehydrogenase, beta-hydroxybutyrate dehydrogenase, serum insulin and blood glucose levels of the animals were measured and recorded before and after ACE, STZ and STZ+ACE treatments. Hepatic tissues were also processed for transmission electron microscopy. Electron microscopic examinations showed toxic, deleterious alterations in the

  5. Pan Air Geometry Management System (PAGMS): A data-base management system for PAN AIR geometry data

    NASA Technical Reports Server (NTRS)

    Hall, J. F.

    1981-01-01

    A data-base management system called PAGMS was developed to facilitate the data transfer in applications computer programs that create, modify, plot or otherwise manipulate PAN AIR type geometry data in preparation for input to the PAN AIR system of computer programs. PAGMS is composed of a series of FORTRAN callable subroutines which can be accessed directly from applications programs. Currently only a NOS version of PAGMS has been developed.

  6. PEP725 Pan European Phenological Database

    NASA Astrophysics Data System (ADS)

    Koch, Elisabeth; Adler, Silke; Ungersböck, Markus; Zach-Hermann, Susanne

    2010-05-01

    Europe is in the fortunate situation that it has a long tradition in phenological networking: the history of collecting phenological data and using them in climatology has its starting point in 1751 when Carl von Linné outlined in his work Philosophia Botanica methods for compiling annual plant calendars of leaf opening, flowering, fruiting and leaf fall together with climatological observations "so as to show how areas differ". The Societas Meteorologicae Palatinae at Mannheim well known for its first European wide meteorological network also established a phenological network which was active from 1781 to 1792. Recently in most European countries, phenological observations have been carried out routinely for more than 50 years by different governmental and non governmental organisations and following different observation guidelines, the data stored at different places in different formats. This has been really hampering pan European studies, as one has to address many National Observations Programs (NOP) to get access to the data before one can start to bring them in a uniform style. From 2004 to 2005 the COST-action 725 was running with the main objective to establish a European reference data set of phenological observations that can be used for climatological purposes, especially climate monitoring, and detection of changes. So far the common database/reference data set of COST725 comprises 7687248 data from 7285 observation sites in 15 countries and International Phenological Gardens (IPG) spanning the timeframe from 1951 to 2000. ZAMG is hosting the database. In January 2010 PEP725 has started and will take over not only the part of maintaining, updating the database, but also to bring in phenological data from the time before 1951, developing better quality checking procedures and ensuring an open access to the database. An attractive webpage will make phenology and climate impacts on vegetation more visible in the public enabling a monitoring of

  7. PEP725 Pan European Phenological Database

    NASA Astrophysics Data System (ADS)

    Koch, E.; Adler, S.; Lipa, W.; Ungersböck, M.; Zach-Hermann, S.

    2010-09-01

    Europe is in the fortunate situation that it has a long tradition in phenological networking: the history of collecting phenological data and using them in climatology has its starting point in 1751 when Carl von Linné outlined in his work Philosophia Botanica methods for compiling annual plant calendars of leaf opening, flowering, fruiting and leaf fall together with climatological observations "so as to show how areas differ". Recently in most European countries, phenological observations have been carried out routinely for more than 50 years by different governmental and non governmental organisations and following different observation guidelines, the data stored at different places in different formats. This has been really hampering pan European studies as one has to address many network operators to get access to the data before one can start to bring them in a uniform style. From 2004 to 2009 the COST-action 725 established a European wide data set of phenological observations. But the deliverables of this COST action was not only the common phenological database and common observation guidelines - COST725 helped to trigger a revival of some old networks and to establish new ones as for instance in Sweden. At the end of 2009 the COST action the database comprised about 8 million data in total from 15 European countries plus the data from the International Phenological Gardens IPG. In January 2010 PEP725 began its work as follow up project with funding from EUMETNET the network of European meteorological services and of ZAMG the Austrian national meteorological service. PEP725 not only will take over the part of maintaining, updating the COST725 database, but also to bring in phenological data from the time before 1951, developing better quality checking procedures and ensuring an open access to the database. An attractive webpage will make phenology and climate impacts on vegetation more visible in the public enabling a monitoring of vegetation development.

  8. PEP725 Pan European Phenological Database

    NASA Astrophysics Data System (ADS)

    Koch, E.; Lipa, W.; Ungersböck, M.; Zach-Hermann, S.

    2012-04-01

    PEP725 is a 5 years project with the main object to promote and facilitate phenological research by delivering a pan European phenological database with an open, unrestricted data access for science, research and education. PEP725 is funded by EUMETNET (the network of European meteorological services), ZAMG and the Austrian ministry for science & research bm:w_f. So far 16 European national meteorological services and 7 partners from different nati-onal phenological network operators have joined PEP725. The data access is very easy via web-access from the homepage www.pep725.eu. Ha-ving accepted the PEP725 data policy and registry the data download can be done by different criteria as for instance the selection of a specific plant or all data from one country. At present more than 300 000 new records are available in the PEP725 data-base coming from 31 European countries and from 8150 stations. For some more sta-tions (154) META data (location and data holder) are provided. Links to the network operators and data owners are also on the webpage in case you have more sophisticated questions about the data. Another objective of PEP725 is to bring together network-operators and scientists by organizing workshops. In April 2012 the second of these workshops will take place on the premises of ZAMG. Invited speakers will give presentations spanning the whole study area of phenology starting from observations to modelling. Quality checking is also a big issue. At the moment we study the literature to find ap-propriate methods.

  9. Isolation and characterization of Escherichia coli pantothenate permease (panF) mutants.

    PubMed Central

    Vallari, D S; Rock, C O

    1985-01-01

    Mutants of Escherichia coli K-12 defective in the pantothenate permease (panF) were isolated and characterized. The panF mutation resulted in the complete loss of pantothenate uptake and of the ability to use extracellular vitamin for growth. The growth phenotypes of panF panD, panF panB, and panF panC double mutants showed that the cytoplasmic membrane was impermeable to external pantothenate. Analysis of the intracellular and extracellular metabolites from strain DV1 (panF panD) labeled with beta-[3-3H]alanine demonstrated that a carrier-mediated mechanism for efficient pantothenate efflux remained in the panF mutant. Genetic mapping of this nonselectable allele was facilitated by the isolation of three independent Tn10 insertions close to panF. Two- and three-factor crosses located panF at minute 72 of the E. coli chromosome and established the gene order fabE panF aroE. PMID:2995306

  10. From evaporating pans to transpiring plants (John Dalton Medal Lecture)

    NASA Astrophysics Data System (ADS)

    Roderick, Michael

    2013-04-01

    The name of the original inventor of irrigated agriculture is lost to antiquity. Nevertheless, one can perhaps imagine an inquisitive desert inhabitant noting the greener vegetation along a watercourse and putting two and two together. Once water was being supplied and food was being produced it would be natural to ask a further question: how much water can we put on? No doubt much experience was gained down through the ages, but again, one can readily imagine someone inverting a rain gauge, filling it with water and measuring how fast the water evaporated. The inverted rain gauge measures the demand for water by the atmosphere. We call it the evaporative demand. I do not know if this is what actually happened but it sure makes an interesting start to a talk. Evaporation pans are basically inverted rain gauges. The rain gauge and evaporation pan measure the supply and demand respectively and these instruments are the workhorses of agricultural meteorology. Rain gauges are well known. Evaporation pans are lesser known but are in widespread use and are a key part of several national standardized meteorological networks. Many more pans are used for things like scheduling irrigation on farms or estimating evaporation from lakes. Analysis of the long records now available from standardized networks has revealed an interesting phenomenon, i.e., pan evaporation has increased in some places and decreased in other but when averaged over large numbers of pans there has been a steady decline. These independent reports from, for example, the US, Russia, China, India, Thailand, are replicated in the southern hemisphere in, for example, Australia, New Zealand and South Africa. One often hears the statement that because the earth is expected to warm with increasing greenhouse gas emissions then it follows that water will evaporate faster. The pan evaporation observations show that this widely held expectation is wrong. When expectations disagree with observations, it is the

  11. PAN Among the Peaks: A preliminary analysis of new peroxyacetyl nitrate (PAN) measurements in Rocky Mountain National Park

    NASA Astrophysics Data System (ADS)

    Callahan, S. L.; Fischer, E. V.; Zhou, Y.; Sive, B. C.

    2014-12-01

    Several different classes of organic nitrogen compounds are produced when volatile organic compounds (VOCs) are oxidized in the presence of nitrogen oxide radicals (NOx). The peroxyacyl nitrates and organic nitrates are particularly important as they serve as temporary or permanent sinks for NOx. PAN (peroxyacetyl nitrate, CH3C(O)O2NO2) is the most important NOx reservoir, and its eventual decomposition acts as a pathway by which NOx reaches the remote troposphere. The emissions from oil and gas extraction represent a new VOC regime that could change the local fate of NOx because the particular mix of VOCs emitted from oil and gas operations should favor PAN formation. We present new PAN observations from Rocky Mountain National Park (ROMO) for the period 11 July to 15 August. The observations were collected during the Colorado Front Range Air Pollution and Photochemistry Éxperiment (FRAPPÉ). PAN was measured at ROMO with a custom built gas chromatograph with an electron capture detector (GC-ECD). At the time of submission, preliminary campaign mean and maximum PAN mixing ratios were 170 pptv and 1345 pptv respectively. Initial analyses of the data collected to date suggest that the maximum PAN mixing ratios at ROMO occurred on the afternoons of 22 and 23 July. Co-located measurements of VOCs on 22 July indicate that the elevated PAN coincided with elevated abundances light alkanes and other secondary species (O3 and alkyl nitrates). The ratio of i-pentane to n- pentane (≤1) indicates that this air mass was strongly impacted by oil and gas production operations.

  12. Overview of ATLAS PanDA Workload Management

    SciTech Connect

    Maeno T.; De K.; Wenaus T.; Nilsson P.; Stewart G. A.; Walker R.; Stradling A.; Caballero J.; Potekhin M.; Smith D.

    2011-01-01

    The Production and Distributed Analysis System (PanDA) plays a key role in the ATLAS distributed computing infrastructure. All ATLAS Monte-Carlo simulation and data reprocessing jobs pass through the PanDA system. We will describe how PanDA manages job execution on the grid using dynamic resource estimation and data replication together with intelligent brokerage in order to meet the scaling and automation requirements of ATLAS distributed computing. PanDA is also the primary ATLAS system for processing user and group analysis jobs, bringing further requirements for quick, flexible adaptation to the rapidly evolving analysis use cases of the early datataking phase, in addition to the high reliability, robustness and usability needed to provide efficient and transparent utilization of the grid for analysis users. We will describe how PanDA meets ATLAS requirements, the evolution of the system in light of operational experience, how the system has performed during the first LHC data-taking phase and plans for the future.

  13. The ATLAS PanDA Monitoring System and its Evolution

    NASA Astrophysics Data System (ADS)

    Klimentov, A.; Nevski, P.; Potekhin, M.; Wenaus, T.

    2011-12-01

    The PanDA (Production and Distributed Analysis) Workload Management System is used for ATLAS distributed production and analysis worldwide. The needs of ATLAS global computing imposed challenging requirements on the design of PanDA in areas such as scalability, robustness, automation, diagnostics, and usability for both production shifters and analysis users. Through a system-wide job database, the PanDA monitor provides a comprehensive and coherent view of the system and job execution, from high level summaries to detailed drill-down job diagnostics. It is (like the rest of PanDA) an Apache-based Python application backed by Oracle. The presentation layer is HTML code generated on the fly in the Python application which is also responsible for managing database queries. However, this approach is lacking in user interface flexibility, simplicity of communication with external systems, and ease of maintenance. A decision was therefore made to migrate the PanDA monitor server to Django Web Application Framework and apply JSON/AJAX technology in the browser front end. This allows us to greatly reduce the amount of application code, separate data preparation from presentation, leverage open source for tools such as authentication and authorization mechanisms, and provide a richer and more dynamic user experience. We describe our approach, design and initial experience with the migration process.

  14. The Pan-STARRS Moving Object Processing System

    NASA Astrophysics Data System (ADS)

    Denneau, Larry; Jedicke, Robert; Grav, Tommy; Granvik, Mikael; Kubica, Jeremy; Milani, Andrea; Vereš, Peter; Wainscoat, Richard; Chang, Daniel; Pierfederici, Francesco; Kaiser, N.; Chambers, K. C.; Heasley, J. N.; Magnier, Eugene A.; Price, P. A.; Myers, Jonathan; Kleyna, Jan; Hsieh, Henry; Farnocchia, Davide; Waters, Chris; Sweeney, W. H.; Green, Denver; Bolin, Bryce; Burgett, W. S.; Morgan, J. S.; Tonry, John L.; Hodapp, K. W.; Chastel, Serge; Chesley, Steve; Fitzsimmons, Alan; Holman, Matthew; Spahr, Tim; Tholen, David; Williams, Gareth V.; Abe, Shinsuke; Armstrong, J. D.; Bressi, Terry H.; Holmes, Robert; Lister, Tim; McMillan, Robert S.; Micheli, Marco; Ryan, Eileen V.; Ryan, William H.; Scotti, James V.

    2013-04-01

    We describe the Pan-STARRS Moving Object Processing System (MOPS), a modern software package that produces automatic asteroid discoveries and identifications from catalogs of transient detections from next-generation astronomical survey telescopes. MOPS achieves >99.5% efficiency in producing orbits from a synthetic but realistic population of asteroids whose measurements were simulated for a Pan-STARRS4-class telescope. Additionally, using a nonphysical grid population, we demonstrate that MOPS can detect populations of currently unknown objects such as interstellar asteroids. MOPS has been adapted successfully to the prototype Pan-STARRS1 telescope despite differences in expected false detection rates, fill-factor loss, and relatively sparse observing cadence compared to a hypothetical Pan-STARRS4 telescope and survey. MOPS remains highly efficient at detecting objects but drops to 80% efficiency at producing orbits. This loss is primarily due to configurable MOPS processing limits that are not yet tuned for the Pan-STARRS1 mission. The core MOPS software package is the product of more than 15 person-years of software development and incorporates countless additional years of effort in third-party software to perform lower-level functions such as spatial searching or orbit determination. We describe the high-level design of MOPS and essential subcomponents, the suitability of MOPS for other survey programs, and suggest a road map for future MOPS development.

  15. Overview of ATLAS PanDA Workload Management

    NASA Astrophysics Data System (ADS)

    Maeno, T.; De, K.; Wenaus, T.; Nilsson, P.; Stewart, G. A.; Walker, R.; Stradling, A.; Caballero, J.; Potekhin, M.; Smith, D.; ATLAS Collaboration

    2011-12-01

    The Production and Distributed Analysis System (PanDA) plays a key role in the ATLAS distributed computing infrastructure. All ATLAS Monte-Carlo simulation and data reprocessing jobs pass through the PanDA system. We will describe how PanDA manages job execution on the grid using dynamic resource estimation and data replication together with intelligent brokerage in order to meet the scaling and automation requirements of ATLAS distributed computing. PanDA is also the primary ATLAS system for processing user and group analysis jobs, bringing further requirements for quick, flexible adaptation to the rapidly evolving analysis use cases of the early datataking phase, in addition to the high reliability, robustness and usability needed to provide efficient and transparent utilization of the grid for analysis users. We will describe how PanDA meets ATLAS requirements, the evolution of the system in light of operational experience, how the system has performed during the first LHC data-taking phase and plans for the future.

  16. Monthly pan evaporation modeling using linear genetic programming

    NASA Astrophysics Data System (ADS)

    Guven, Aytac; Kisi, Ozgur

    2013-10-01

    This study compares the accuracy of linear genetic programming (LGP), fuzzy genetic (FG), adaptive neuro-fuzzy inference system (ANFIS), artificial neural networks (ANN) and Stephens-Stewart (SS) methods in modeling pan evaporations. Monthly climatic data including solar radiation, air temperature, relative humidity, wind speed and pan evaporation from Antalya and Mersin stations, in Turkey are used in the study. The study composed of two parts. First part of the study focuses the comparison of LGP models with those of the FG, ANFIS, ANN and SS models in estimating pan evaporations of Antalya and Mersin stations, separately. From the comparison results, the LGP models are found to be better than the other models. Comparison of LGP models with the other models in estimating pan evaporations of the Mersin Station by using both stations' inputs is focused in the second part of the study. The results indicate that the LGP models better accuracy than the FG, ANFIS, ANN and SS models. It is seen that the pan evaporations can be successfully estimated by the LGP method.

  17. Towards a holistic review of Pan-Africanism: linking the idea and the movement.

    PubMed

    Young, Kurt B

    2010-01-01

    This article explores two general approaches to defining Pan-Africanism. Traditional Pan-Africanism reflects definitions of Pan-Africanism that begin with the assumption that distinctions must be made between early "ideas" of group identification with Africa versus modern organizational activities. However, holistic approaches emphasize the interconnectivity of Pan-African ideas and concrete activities. This discussion explores these approaches and their implications for contemporary analyses of Pan-Africanism. The essay concludes that the holistic line is best suited for developing a new model in Pan-Africanism. PMID:20648996

  18. Portion of Enhanced 360-degree Gallery Pan

    NASA Technical Reports Server (NTRS)

    1997-01-01

    This is a sub-section of the 'geometrically improved, color enhanced' version of the 360-degree panorama heretofore known as the 'Gallery Pan', the first contiguous, uniform panorama taken by the Imager for Mars Pathfinder (IMP) over the course of Sols 8, 9, and 10. Different regions were imaged at different times over the three Martian days to acquire consistent lighting and shadow conditions for all areas of the panorama.

    The IMP is a stereo imaging system that, in its fully deployed configuration, stands 1.8 meters above the Martian surface, and has a resolution of two millimeters at a range of two meters. In this geometrically improved version of the panorama, distortion due to a 2.5 degree tilt in the IMP camera mast has been removed, effectively flattening the horizon.

    The IMP has color capability provided by 24 selectable filters -- twelve filters per 'eye'. Its red, green, and blue filters were used to take this image. The color was digitally balanced according to the color transmittance capability of a high-resolution TV at the Jet Propulsion Laboratory (JPL), and is dependent on that device. In this color enhanced version of the panorama, detail in surface features are brought out via changes to saturation and intensity, holding the original hue constant. A threshold was applied to avoid changes to the sky.

    At left is a Lander petal and a metallic mast which is a portion of the low-gain antenna. Misregistration in the antenna and other Lander features is due to parallax in the extreme foreground. Another Lander petal is at the right, showing the fully deployed forward ramp.

    Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is a division of the California Institute of Technology (Caltech). The IMP was developed by the University

  19. Structural Oil Pan With Integrated Oil Filtration And Cooling System

    DOEpatents

    Freese, V, Charles Edwin

    2000-05-09

    An oil pan for an internal combustion engine includes a body defining a reservoir for collecting engine coolant. The reservoir has a bottom and side walls extending upwardly from the bottom to present a flanged lip through which the oil pan may be mounted to the engine. An oil cooler assembly is housed within the body of the oil pan for cooling lubricant received from the engine. The body includes an oil inlet passage formed integrally therewith for receiving lubricant from the engine and delivering lubricant to the oil cooler. In addition, the body also includes an oil pick up passage formed integrally therewith for providing fluid communication between the reservoir and the engine through the flanged lip.

  20. Roary: rapid large-scale prokaryote pan genome analysis

    PubMed Central

    Page, Andrew J.; Cummins, Carla A.; Hunt, Martin; Wong, Vanessa K.; Reuter, Sandra; Holden, Matthew T.G.; Fookes, Maria; Falush, Daniel; Keane, Jacqueline A.; Parkhill, Julian

    2015-01-01

    Summary: A typical prokaryote population sequencing study can now consist of hundreds or thousands of isolates. Interrogating these datasets can provide detailed insights into the genetic structure of prokaryotic genomes. We introduce Roary, a tool that rapidly builds large-scale pan genomes, identifying the core and accessory genes. Roary makes construction of the pan genome of thousands of prokaryote samples possible on a standard desktop without compromising on the accuracy of results. Using a single CPU Roary can produce a pan genome consisting of 1000 isolates in 4.5 hours using 13 GB of RAM, with further speedups possible using multiple processors. Availability and implementation: Roary is implemented in Perl and is freely available under an open source GPLv3 license from http://sanger-pathogens.github.io/Roary Contact: roary@sanger.ac.uk Supplementary information: Supplementary data are available at Bioinformatics online. PMID:26198102

  1. Structure and optoelectrical properties of photopolymerized PAn/DNA complex

    NASA Astrophysics Data System (ADS)

    Kobayashi, Norihisa; Morimoto, Taro; Ushikubo, Takahiro

    2007-09-01

    A Polyaniline (PAn)/ DNA complex has been successfully prepared by the photopolymerization of dimeric aniline via photocatalytic reaction of Ru(bpy) 3 2+ in the presence of DNA. The reaction occurs even in the solution at pH 3.0 - 6.0, due to the specific local "lower-pH" environment provided by DNA. The PAn in the complex has ordered structure associated with double-helical DNA. The complex contains photocatalyst, Ru(bpy) 3 2+, even after purification and the Ru(bpy) 3 2+ also works as emitting material. A Ru(bpy) 3 2+ complex-based red-emitting diode with a fast turn-on response was successfully fabricated by employing this novel, processable and water-soluble PAn/DNA complex.

  2. Bioenergy and Biodiversity: Key Lessons from the Pan American Region

    NASA Astrophysics Data System (ADS)

    Kline, Keith L.; Martinelli, Fernanda Silva; Mayer, Audrey L.; Medeiros, Rodrigo; Oliveira, Camila Ortolan F.; Sparovek, Gerd; Walter, Arnaldo; Venier, Lisa A.

    2015-12-01

    Understanding how large-scale bioenergy production can affect biodiversity and ecosystems is important if society is to meet current and future sustainable development goals. A variety of bioenergy production systems have been established within different contexts throughout the Pan American region, with wide-ranging results in terms of documented and projected effects on biodiversity and ecosystems. The Pan American region is home to the majority of commercial bioenergy production and therefore the region offers a broad set of experiences and insights on both conflicts and opportunities for biodiversity and bioenergy. This paper synthesizes lessons learned focusing on experiences in Canada, the United States, and Brazil regarding the conflicts that can arise between bioenergy production and ecological conservation, and benefits that can be derived when bioenergy policies promote planning and more sustainable land-management systems. We propose a research agenda to address priority information gaps that are relevant to biodiversity concerns and related policy challenges in the Pan American region.

  3. Recent Improvements in the ATLAS PanDA Pilot

    NASA Astrophysics Data System (ADS)

    Nilsson, P.; Caballero Bejar, J.; Compostella, G.; Contreras, C.; De, K.; Dos Santos, T.; Maeno, T.; Potekhin, M.; Wenaus, T.

    2012-12-01

    The Production and Distributed Analysis system (PanDA) in the ATLAS experiment uses pilots to execute submitted jobs on the worker nodes. The pilots are designed to deal with different runtime conditions and failure scenarios, and support many storage systems. This talk will give a brief overview of the PanDA pilot system and will present major features and recent improvements including CernVM File System integration, the job retry mechanism, advanced job monitoring including JEM technology, and validation of new pilot code using the HammerCloud stress-testing system. PanDA is used for all ATLAS distributed production and is the primary system for distributed analysis. It is currently used at over 130 sites worldwide. We analyze the performance of the pilot system in processing LHC data on the OSG, EGI and Nordugrid infrastructures used by ATLAS, and describe plans for its further evolution.

  4. The future of PanDA in ATLAS distributed computing

    NASA Astrophysics Data System (ADS)

    De, K.; Klimentov, A.; Maeno, T.; Nilsson, P.; Oleynik, D.; Panitkin, S.; Petrosyan, A.; Schovancova, J.; Vaniachine, A.; Wenaus, T.

    2015-12-01

    Experiments at the Large Hadron Collider (LHC) face unprecedented computing challenges. Heterogeneous resources are distributed worldwide at hundreds of sites, thousands of physicists analyse the data remotely, the volume of processed data is beyond the exabyte scale, while data processing requires more than a few billion hours of computing usage per year. The PanDA (Production and Distributed Analysis) system was developed to meet the scale and complexity of LHC distributed computing for the ATLAS experiment. In the process, the old batch job paradigm of locally managed computing in HEP was discarded in favour of a far more automated, flexible and scalable model. The success of PanDA in ATLAS is leading to widespread adoption and testing by other experiments. PanDA is the first exascale workload management system in HEP, already operating at more than a million computing jobs per day, and processing over an exabyte of data in 2013. There are many new challenges that PanDA will face in the near future, in addition to new challenges of scale, heterogeneity and increasing user base. PanDA will need to handle rapidly changing computing infrastructure, will require factorization of code for easier deployment, will need to incorporate additional information sources including network metrics in decision making, be able to control network circuits, handle dynamically sized workload processing, provide improved visualization, and face many other challenges. In this talk we will focus on the new features, planned or recently implemented, that are relevant to the next decade of distributed computing workload management using PanDA.

  5. Evaluation of the tablets' surface flow velocities in pan coaters.

    PubMed

    Dreu, Rok; Toschkoff, Gregor; Funke, Adrian; Altmeyer, Andreas; Knop, Klaus; Khinast, Johannes; Kleinebudde, Peter

    2016-09-01

    The tablet pan coating process involves various types of transverse tablet bed motions, ranging from rolling to cascading. To preserve satisfactory results in terms of coating quality after scale-up, understanding the dynamics of pan coating process should be achieved. The aim of this study was to establish a methodology of estimating translational surface velocities of the tablets in a pan coater and to assess their dependence on the drum's filling degree, the pan speed, the presence of baffles and the selected tablet properties in a dry bed system and during coating while varying the drum's filling degree and the pan speed. Experiments were conducted on the laboratory scale and on the pilot scale in side-vented pan coaters. Surface movement of biconvex two-layer tablets was assessed before, during and after the process of active coating. In order to determine the tablets' surface flow velocities, a high-speed video of the tablet surface flow was recorded via a borescope inserted into the coating drum and analysed via a cross-correlation algorithm. The obtained tablet velocity data were arranged in a linear fashion as a function of the coating drum's radius and frequency. Velocity data obtained during coating were close to those of dry tablets after coating. The filling degree had little influence on the tablet velocity profile in a coating drum with baffles but clearly affected it in a coating drum without baffles. In most but not all cases, tablets with a lower static angle of repose had tablet velocity profiles with lower slopes than tablets with higher inter-tablet friction. This particular tablet velocity response can be explained by case specific values of tablet bed's dynamic angle of repose. PMID:27264716

  6. Chemical Modification for PAN Fibers during Heat-treatment Process

    NASA Astrophysics Data System (ADS)

    Wang, Yi; Yin, Wenyan

    Chemical modification for Polyacrylonitrile (PAN) fibers during heat-treatment process were systematically studied by DSC, FT-IR, EA, XPS, etal. Comparing with original PAN fibers, chemical reactions, structures and elemental compositions of fibers modified with potassium permanganate (KMnO4) solutions were totally changed at a certain extent. KMnO4 had reduced the activation energy of cyclization, decreased the area and widened the peak of exothermic curve, decreased the velocity of cyclization reaction, increased the oxygen content about 67%, hence increased C-O-C and C=O groups and the core/shell ratio.

  7. Proton Conducting Polymer Electrolyte Based on Pva-Pan

    NASA Astrophysics Data System (ADS)

    Devi, S. Siva; Selvasekarapandian, S.; Rajeswari, N.; Genova, F. Kingslin Mary; Karthikeyan, S.; Raja, C. Sanjeevi

    2013-07-01

    Proton conducting polymer electrolytes based on blend polymer using Poly Vinyl Alcohol (PVA) and Poly Acrylo Nitrile (PAN) doped with ammonium nitrate have been prepared by solution casting method. The highest conductivity at room temperature (305K) has been found to be 1.8×10-3 S cm-1 for 15 mole % NH4NO3 doped PVA-PAN system. X ray Diffraction pattern of the doped and the undoped blend polymer electrolyte confirms the amorphous nature of blend polymer, when salt is added. The complex formation between the blend polymer and the salt has been confirmed by Fourier transform infrared spectroscopy.

  8. 75 FR 47262 - Federal Consistency Appeal by Pan American Grain Co.

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-08-05

    ...This announcement provides notice that the Secretary of Commerce has stayed, for a period of sixty (60) days, closure of the decision record in an administrative appeal filed by Pan American Grain Co. (Pan...

  9. TCGA's Pan-Cancer Efforts and Expansion to Include Whole Genome Sequence - TCGA

    Cancer.gov

    Carolyn Hutter, Ph.D., Program Director of NHGRI's Division of Genomic Medicine, discusses the expansion of TCGA's Pan-Cancer efforts to include the Pan-Cancer Analysis of Whole Genomes (PAWG) project.

  10. Pan-Eurasian experiment (PEEX) establishing a process towards high level Pan-Eurasian atmosphere-ecosystem observation networks

    NASA Astrophysics Data System (ADS)

    Lappalainen, Hanna K.; Petäjä, Tuukka; Zaytzeva, Nina; Viisanen, Yrjö; Kotlyakov, Vladimir; Kasimov, Nikolay; Bondur, Valery; Matvienko, Gennady; Zilitinkevich, Sergej; Kulmala, Markku

    2014-05-01

    Pan-Eurasian Experiment (PEEX) is a new multidisciplinary research approach aiming at resolving the major uncertainties in the Earth system science and global sustainability questions in the Arctic and boreal Pan-Eurasian regions (Kulmala et al. 2011). The main goal of PEEX Research agenda is to contribute to solving the scientific questions that are specifically important for the Pan-Eurasian region in the coming years, in particular the global climate change and its consequences to nature and human society. Pan Eurasian region represents one the Earth most extensive areas of boreal forest (taiga) and the largest natural wetlands, thus being a significant source area of trace gas emissions, biogenic aerosol particles, and source and sink area for the greenhouse gas (GHG) exchange in a global scale (Guenther et al. 1995, Timkovsky et al. 2010, Tunved et al. 2006, Glagolev et al. 2010). One of the first activities of the PEEX initiative is to establish a process towards high level Pan-Eurasian Observation Networks. Siberian region is currently lacking a coordinated, coherent ground based atmosphere-ecosystem measurement network, which would be crucial component for observing and predicting the effects of climate change in the Northern Pan- Eurasian region The vision of the Pan-Eurasion network will be based on a hierarchical SMEAR-type (Stations Measuring Atmosphere-Ecosystem Interactions) integrated land-atmosphere observation system (Hari et al. 2009). A suite of stations have been selected for the Preliminary Phase of PEEX Observation network. These Preliminary Phase stations includes the SMEAR-type stations in Finland (SMEAR-I-II-II-IV stations), in Estonia (SMEAR-Järviselja) and in China (SMEAR-Nanjing) and selected stations in Russia and ecosystem station network in China. PEEX observation network will fill in the current observational gap in the Siberian region and bring the Siberian observation setup into international context with the with standardized or

  11. 75 FR 61502 - Cooperative Agreement With the Pan American Health Organization for the Development of an...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-05

    ... HUMAN SERVICES Food and Drug Administration Cooperative Agreement With the Pan American Health... application to award a cooperative agreement to the Pan American Health Organization (PAHO) for the... efforts, such as the Pan American Network for Drug Regulatory Harmonization (PANDRH), the ICH...

  12. 75 FR 61698 - Federal Consistency Appeal by Pan American Grain Co.

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-06

    ... published in the Federal Register on February 26, 2010. See 75 FR 8919. The Secretary is required under the... National Oceanic and Atmospheric Administration Federal Consistency Appeal by Pan American Grain Co. AGENCY... administrative appeal filed with the Secretary of Commerce (Secretary) by Pan American Grain Co. (Pan...

  13. 75 FR 8919 - Federal Consistency Appeal by Pan American Grain Co.

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-26

    ... National Oceanic and Atmospheric Administration Federal Consistency Appeal by Pan American Grain Co. AGENCY.... SUMMARY: This announcement provides notice that Pan American Grain Co., has filed an administrative appeal...@noaa.gov . SUPPLEMENTARY INFORMATION: I. Notice of Appeal On January 27, 2010, Pan American Grain...

  14. INFLUENCE OF PEROXYACETYL NITRATE (PAN) ON WATER STRESS IN BEAN PLANTS

    EPA Science Inventory

    Bean plants (Phaseolus vulgaris) were exposed to 395 micrograms/cu m (0.08 ppm) peroxyacetyl nitrate (PAN) for 0.5 hr and subjected to drought stress following exposure. PAN influenced the plant water potential of PAN-sensitive 'Provider' resulting in visible wilting and reduced ...

  15. The Historical Aspects of the Pan American Games.

    ERIC Educational Resources Information Center

    Emery, Curtis R.

    The purpose of this study was to produce an accurate account of the origin and development of the Pan American Games. A further purpose was to collect, organize, and systematically compile the results of competition for each festival, and to identify some noteworthy incidents in each series of games. The document first explains that the idea of…

  16. Isotopic composition of atmospheric moisture from pan water evaporation measurements.

    PubMed

    Devi, Pooja; Jain, Ashok Kumar; Rao, M Someshwer; Kumar, Bhishm

    2015-01-01

    A continuous and reliable time series data of the stable isotopic composition of atmospheric moisture is an important requirement for the wider applicability of isotope mass balance methods in atmospheric and water balance studies. This requires routine sampling of atmospheric moisture by an appropriate technique and analysis of moisture for its isotopic composition. We have, therefore, used a much simpler method based on an isotope mass balance approach to derive the isotopic composition of atmospheric moisture using a class-A drying evaporation pan. We have carried out the study by collecting water samples from a class-A drying evaporation pan and also by collecting atmospheric moisture using the cryogenic trap method at the National Institute of Hydrology, Roorkee, India, during a pre-monsoon period. We compared the isotopic composition of atmospheric moisture obtained by using the class-A drying evaporation pan method with the cryogenic trap method. The results obtained from the evaporation pan water compare well with the cryogenic based method. Thus, the study establishes a cost-effective means of maintaining time series data of the isotopic composition of atmospheric moisture at meteorological observatories. The conclusions drawn in the present study are based on experiments conducted at Roorkee, India, and may be examined at other regions for its general applicability. PMID:26332982

  17. Can Chimpanzees ("Pan troglodytes") Discriminate Appearance from Reality?

    ERIC Educational Resources Information Center

    Krachun, Carla; Call, Josep; Tomasello, Michael

    2009-01-01

    A milestone in human development is coming to recognize that how something looks is not necessarily how it is. We tested appearance-reality understanding in chimpanzees ("Pan troglodytes") with a task requiring them to choose between a small grape and a big grape. The apparent relative size of the grapes was reversed using magnifying and…

  18. 24. Roof detail from liftbed truck, showing pan roof above ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    24. Roof detail from lift-bed truck, showing pan roof above breezeway, with sawn redwood trim, tube-type drains; note missing rain gutter at roof edge, deteriorated condition of slates; view to south, 90mm lens. - Southern Pacific Depot, 559 El Camino Real, San Carlos, San Mateo County, CA

  19. Characterization of low thermal conductivity PAN-based carbon fibers

    NASA Technical Reports Server (NTRS)

    Katzman, Howard A.; Adams, P. M.; Le, T. D.; Hemminger, Carl S.

    1992-01-01

    The microstructure and surface chemistry of eight low thermal conductivity (LTC) PAN-based carbon fibers were determined and compared with PAN-based fibers heat treated to higher temperatures. Based on wide-angle x ray diffraction, the LTC PAN fibers all appear to have a similar turbostratic structure with large 002 d-spacings, small crystallite sizes, and moderate preferred orientation. Limited small-angle x ray scattering (SAXS) results indicate that, with the exception of LTC fibers made by BASF, the LTC fibers do not have well developed pores. Transmission electron microscopy shows that the texture of the two LTC PAN-based fibers studied (Amoco T350/23X and /25X) consists of multiple sets of parallel, wavy, bent layers that interweave with each other forming a complex three dimensional network oriented randomly around the fiber axis. X ray photoelectron spectroscopy (XPS) analysis finds correlations between heat treated temperatures and the surface composition chemistry of the carbon fiber samples.

  20. Maya Education and Pan Maya Ideology in the Yucatan.

    ERIC Educational Resources Information Center

    Burns, Allan

    1998-01-01

    A University of Yucatan (Mexico) professor who taught a Mayan linguistics course to indigenous teachers in Mayan discusses three issues that are central to understanding how indigenous education interacts with pan-Maya identity: the importance of locally developed Maya literature, the symbols used to define Maya culture, and a conflict over Maya…

  1. Vaccination to conserved influenza antigens in mice using a novel Simian adenovirus vector, PanAd3, derived from the bonobo Pan paniscus.

    PubMed

    Vitelli, Alessandra; Quirion, Mary R; Lo, Chia-Yun; Misplon, Julia A; Grabowska, Agnieszka K; Pierantoni, Angiolo; Ammendola, Virginia; Price, Graeme E; Soboleski, Mark R; Cortese, Riccardo; Colloca, Stefano; Nicosia, Alfredo; Epstein, Suzanne L

    2013-01-01

    Among approximately 1000 adenoviruses from chimpanzees and bonobos studied recently, the Pan Adenovirus type 3 (PanAd3, isolated from a bonobo, Pan paniscus) has one of the best profiles for a vaccine vector, combining potent transgene immunogenicity with minimal pre-existing immunity in the human population. In this study, we inserted into a replication defective PanAd3 a transgene expressing a fusion protein of conserved influenza antigens nucleoprotein (NP) and matrix 1 (M1). We then studied antibody and T cell responses as well as protection from challenge infection in a mouse model. A single intranasal administration of PanAd3-NPM1 vaccine induced strong antibody and T cell responses, and protected against high dose lethal influenza virus challenge. Thus PanAd3 is a promising candidate vector for vaccines, including universal influenza vaccines. PMID:23536756

  2. An Intercomparison of Airborne VOC and PAN Measurements

    NASA Astrophysics Data System (ADS)

    Hansel, A.; Wisthaler, A.; Flocke, F.; Weinheimer, A.; Fall, R.; Goldan, P.; Hübler, G.; Fehsenfeld, F. C.

    2002-12-01

    As part of the Texas Air Quality Study (TexAQS 2000) an informal airborne intercomparison has been conducted to evaluate the state-of-the-art of fast-response, in-situ methods for analyzing Volatile Organic Compounds (VOCs) and peroxyacetyl nitrate (PAN). Instrumentation included a Proton-Transfer-Reaction Mass Spectrometer (PTR-MS), the Tropospheric Airborne Chromatograph for Oxy-hydrocarbons and Hydrocarbons (TACOH) and a gas chromatograph for PAN detection using electron capture (GC/ECD). The measurements were made in the Greater Houston area and East Texas in August/September 2000 during 13 flights with the NSF/NCAR ELECTRA aircraft. The intercomparison was conducted mainly in the boundary layer but included some encounters with air masses from the free troposphere. Final results from the intercomparison show that measurements of acetaldehyde, isoprene, the sum\\textsuperscript{*} of acetone and propanal, the sum\\textsuperscript{*} methyl vinyl ketone and methacrolein (\\textsuperscript{*} PTR-MS does not distinguish between isobaric species) and toluene agree very well. Poor agreement was achieved in the case of methanol and the underlying sensitivity problem in the PTR-MS or TACOH system is under investigation. The results of the PAN intercomparison indicate that the PTR-MS technique suffered from an interference most likely associated with the presence of peracetic acid in photochemically aged air. If this interfering signal was traced by periodically inserting a selective PAN scrubber (thermal decomposition) into the sample air stream and subtracted from the original signal, the corrected PTR-MS PAN data are in very good agreement with the GC/ECD results.

  3. 3 CFR 8361 - Proclamation 8361 of April 14, 2009. Pan American Day and Pan American Week, 2009

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... supports strong democracies and the development of alternative energy sources. The promotion of transparent... alternative energy sources, and the Pan American community must build upon these promising efforts. As we..., strong democratic governance, and clean energy. Robust, bottom-up economic growth benefits all...

  4. Adsorption Isotherms for Xenon and Krypton using INL HZ-PAN and AgZ-PAN Sorbents

    SciTech Connect

    Troy G. Garn; Mitchell Greenhalgh; Veronica J. Rutledge; Jack D. Law

    2014-08-01

    The generation of adsorption isotherms compliments the scale-up of off-gas processes used to control the emission of encapsulated radioactive volatile fission and activation products released during Used Nuclear Fuel (UNF) reprocessing activities. A series of experiments were conducted to obtain capacity results for varying Kr and Xe gas concentrations using HZ-PAN and AgZ-PAN engineered form sorbents. Gas compositions for Kr ranged from 150-40,000 ppmv and 250-5020 ppmv for Xe in a helium balance. The experiments were all performed at 220 K at a flowrate of 50 sccm. Acquired capacities were then respectively fit to the Langmuir equation using the Langmuir linear regression method to obtain the equilibrium parameters Qmax and Keq. Generated experimental adsorption isotherms were then plotted with the Langmuir predicted isotherms to illustrate agreement between the two. The Langmuir parameters were provided for input into the OSPREY model to predict breakthrough of single component adsorption of Kr and Xe on HZ-PAN and AgZ-PAN sorbents at the experimental conditions tested. Kr and Xe capacities resulting from model breakthrough predictions were then compared to experimental capacities for model validation.

  5. Metallurgical and acoustical characterization of a hydroformed, 304 stainless steel, Caribbean-style musical pan

    SciTech Connect

    Murr, L.E. Gaytan, S.M.; Lopez, M.I.; Bujanda, D.E.; Martinez, E.Y.; Whitmyre, G.; Price, H.

    2008-03-15

    We report herein the metallurgical and acoustical characterization of hydroformed 304 stainless steel, Caribbean pans. These pans were fully tuned to chromatic tones and compared to a manufactured, low-carbon, Caribbean steel pan standard. Hydroformed platforms had a Vickers microindentation hardness of HV 345, which was reduced by annealing during pan fabrication to HV 270. Skirts welded to the hydroformed head had a microindentation hardness of HV 440. Microstructural characterization by light optical metallography and transmission electron microscopy illustrated microstructures (including grain structures) characteristic of these pan microindentation hardnesses.

  6. Changes in flavor volatile composition of oolong tea after panning during tea processing.

    PubMed

    Sheibani, Ershad; Duncan, Susan E; Kuhn, David D; Dietrich, Andrea M; Newkirk, Jordan J; O'Keefe, Sean F

    2016-05-01

    Panning is a processing step used in manufacturing of some varieties of oolong tea. There is limited information available on effects of panning on oolong tea flavors. The goal of this study was to determine effects of panning on flavor volatile compositions of oolong using Gas Chromatography-Mass Spectrometry (GC-MS) and Gas Chromatography-Olfactometry (GC-O). SDE and SPME techniques were applied for extraction of volatiles in panned and unpanned teas. A total of 190 volatiles were identified from SDE and SPME extractions using GC-MS and GC-O. There were no significant differences (P > 0.05) in aldehyde or terpene contents of unpanned and panned tea. However, alcohols, ketones, acids and esters contents were significantly reduced by panning. Among 12 major volatiles previously used for identification and quality assessment of oolong tea, trans nerolidol, 2- hexenal, benzaldehyde, indole, gernaiol, and benzenacetaldehyde contents were significantly decreased (P < 0.05) by panning. Panning increased (P < 0.05) contents of linalool oxide, cis jasmone, and methyl salicylate. The GC-O study also showed an increase of aroma active compounds with sweet descriptions and decrease of aroma active compounds with fruity and smoky descriptions after panning. Panning significantly changes the volatile compositions of the tea and created new aroma active compounds. Results from this study can be used in quality assessment of panned oolong tea. PMID:27247775

  7. Simulations of Peroxyacetyl Nitrate (PAN) Photochemistry in the Arctic Surface Layer

    NASA Astrophysics Data System (ADS)

    Dassau, T. M.; Ford, K. M.; Shepson, P. B.; Bottenheim, J. W.

    2002-12-01

    Peroxyacetyl nitrate (PAN) is a reservoir compound of NOx_ that has the ability to transport NOx_ to remote environments, allowing for NOx_ photochemistry and/or deposition of nitrogen to these clean locations. Measurements of PAN have been made at Alert, Nunavut and Summit, Greenland aimed at understanding the nitrogen budget at each site. These measurements show concentrations of PAN that are only slowly varying, even during ozone depletion events at sunrise. However, calculations of [PAN], using its primary sources and sinks, indicate a dramatic production rate for PAN when the surface is sunlit. This is inconsistent with the measurement data, illustrating that we are missing an important sink for atmospheric PAN above snow-covered surfaces. We performed a zero-dimensional model of PAN photochemistry at Alert, Nunavut and Summit, Greenland, which simulated the known gas-phase chemistry of each region, to discern the predicted PAN behavior in each environment. We then adjusted the model sinks to simulate the ambient PAN data, in order to determine the magnitude of the missing PAN sink. Ambient data from Alert, Nunavut (1998 and 2000), and Summit, Greenland (1999) will be presented, as well as the original model simulations based upon the known gas-phase chemistry of each environment. In addition, we will discuss the magnitude of the missing sink, and the potential for PAN interaction with the snowpack.

  8. The Equatorial Ridges of Pan and Atlas: Terminal Accretionary Ornaments?

    NASA Astrophysics Data System (ADS)

    Charnoz, Sébastien; Brahic, André; Thomas, Peter C.; Porco, Carolyn C.

    2007-12-01

    In the outer regions of Saturn’s main rings, strong tidal forces balance gravitational accretion processes. Thus, unusual phenomena may be expected there. The Cassini spacecraft has recently revealed the strange “flying saucer” shape of two small satellites, Pan and Atlas, located in this region, showing prominent equatorial ridges. The accretion of ring particles onto the equatorial surfaces of already-formed bodies embedded in the rings may explain the formation of the ridges. This ridge formation process is in good agreement with detailed Cassini images showing differences between rough polar and smooth equatorial terrains. We propose that Pan and Atlas ridges are kilometers-thick “ring-particle piles” formed after the satellites themselves and after the flattening of the rings but before the complete depletion of ring material from their surroundings.

  9. The equatorial ridges of Pan and Atlas: terminal accretionary ornaments?

    PubMed

    Charnoz, Sébastien; Brahic, André; Thomas, Peter C; Porco, Carolyn C

    2007-12-01

    In the outer regions of Saturn's main rings, strong tidal forces balance gravitational accretion processes. Thus, unusual phenomena may be expected there. The Cassini spacecraft has recently revealed the strange "flying saucer" shape of two small satellites, Pan and Atlas, located in this region, showing prominent equatorial ridges. The accretion of ring particles onto the equatorial surfaces of already-formed bodies embedded in the rings may explain the formation of the ridges. This ridge formation process is in good agreement with detailed Cassini images showing differences between rough polar and smooth equatorial terrains. We propose that Pan and Atlas ridges are kilometers-thick "ring-particle piles" formed after the satellites themselves and after the flattening of the rings but before the complete depletion of ring material from their surroundings. PMID:18063797

  10. On the working conditions of a two-pan balance

    NASA Astrophysics Data System (ADS)

    de Carvalho, Carlos R.

    2016-07-01

    In this article we address the assumptions concerning the equilibrium of rigid bodies, commonly used in textbooks, that can lead to completely wrong conclusions. In particular, we show that in an idealised world, where frictions and deformations don’t occur, a steelyard or two-pan balance would not work. This apparent contradiction, that one needs imperfections to make things work, doesn’t appear in textbooks because the corresponding topics are presented in the equilibrium configuration, where the imperfections’ role is no longer necessary. At the end, taking the two-pan balance as example, we show that to avoid of working with imperfections, one must deal with a device whose design has a subtle difference from that one we are used to think about.

  11. PanDaTox: a tool for accelerated metabolic engineering

    SciTech Connect

    Amitai, Gil; Sorek, Rotem

    2012-04-18

    Metabolic engineering is often facilitated by cloning of genes encoding enzymes from various heterologous organisms into E. coli. Such engineering efforts are frequently hampered by foreign genes that are toxic to the E. coli host. We have developed PanDaTox (www.weizmann.ac.il/pandatox), a web-based resource that provides experimental toxicity information for more than 1.5 million genes from hundreds of different microbial genomes. The toxicity predictions, which were extensively experimentally verified, are based on serial cloning of genes into E. coli as part of the Sanger whole genome shotgun sequencing process. PanDaTox can accelerate metabolic engineering projects by allowing researchers to exclude toxic genes from the engineering plan and verify the clonability of selected genes before the actual metabolic engineering experiments are conducted.

  12. Lithium Ion Polymer Electrolyte Based on Pva-Pan

    NASA Astrophysics Data System (ADS)

    Genova, F. Kingslin Mary; Selvasekarapandian, S.; Rajeswari, N.; Devi, S. Siva; Karthikeyan, S.; Raja, C. Sanjeevi

    2013-07-01

    The polymer blend electrolytes based on polyvinylalcohol(PVA) and polyacrylonitrile (PAN) doped with lithium per chlorate (LiClO4) have been prepared by solution casting technique using DMF as solvent. The complex formation between blend polymer and the salt has been confirmed by Fourier transform infrared spectroscopy. The amorphous nature of the blend polymer electrolyte has been confirmed by X-ray diffraction analysis. The ionic conductivity of the prepared blend polymer electrolyte has been found by ac impedence spectroscopic analysis. The highest ionic conductivity has been found to be 5.0 X10-4 S cm -1 at room temperature for 92.5 PVA: 7.5PAN: 20 molecular wt. % of LiClO4. The effect of salt concentration on the conductivity of the blend polymer electrolyte has been discussed.

  13. PAN AIR summary document (version 1.0)

    NASA Technical Reports Server (NTRS)

    Derbyshire, T.; Sidwell, K. W.

    1982-01-01

    The capabilities and limitations of the panel aerodynamics (PAN AIR) computer program system are summarized. This program uses a higher order panel method to solve boundary value problems involving the Prandtl-Glauert equation for subsonic and supersonic potential flows. Both aerodynamic and hydrodynamic problems can be solved using this modular software which is written for the CDC 6600 and 7600, and the CYBER 170 series computers.

  14. Improving Security in the ATLAS PanDA System

    NASA Astrophysics Data System (ADS)

    Caballero, J.; Maeno, T.; Nilsson, P.; Stewart, G.; Potekhin, M.; Wenaus, T.

    2011-12-01

    The security challenges faced by users of the grid are considerably different to those faced in previous environments. The adoption of pilot jobs systems by LHC experiments has mitigated many of the problems associated with the inhomogeneities found on the grid and has greatly improved job reliability; however, pilot jobs systems themselves must then address many security issues, including the execution of multiple users' code under a common 'grid' identity. In this paper we describe the improvements and evolution of the security model in the ATLAS PanDA (Production and Distributed Analysis) system. We describe the security in the PanDA server which is in place to ensure that only authorized members of the VO are allowed to submit work into the system and that jobs are properly audited and monitored. We discuss the security in place between the pilot code itself and the PanDA server, ensuring that only properly authenticated workload is delivered to the pilot for execution. When the code to be executed is from a 'normal' ATLAS user, as opposed to the production system or other privileged actor, then the pilot may use an EGEE developed identity switching tool called gLExec. This changes the grid proxy available to the job and also switches the UNIX user identity to protect the privileges of the pilot code proxy. We describe the problems in using this system and how they are overcome. Finally, we discuss security drills which have been run using PanDA and show how these improved our operational security procedures.

  15. An electronic pan/tilt/zoom camera system

    NASA Technical Reports Server (NTRS)

    Zimmermann, Steve; Martin, H. Lee

    1991-01-01

    A camera system for omnidirectional image viewing applications that provides pan, tilt, zoom, and rotational orientation within a hemispherical field of view (FOV) using no moving parts was developed. The imaging device is based on the effect that from a fisheye lens, which produces a circular image of an entire hemispherical FOV, can be mathematically corrected using high speed electronic circuitry. An incoming fisheye image from any image acquisition source is captured in memory of the device, a transformation is performed for the viewing region of interest and viewing direction, and a corrected image is output as a video image signal for viewing, recording, or analysis. As a result, this device can accomplish the functions of pan, tilt, rotation, and zoom throughout a hemispherical FOV without the need for any mechanical mechanisms. A programmable transformation processor provides flexible control over viewing situations. Multiple images, each with different image magnifications and pan tilt rotation parameters, can be obtained from a single camera. The image transformation device can provide corrected images at frame rates compatible with RS-170 standard video equipment.

  16. Pan-STARRS PS1 Published Science Products Subsystem

    NASA Astrophysics Data System (ADS)

    Heasley, J.; Smith, W.; Eek, R.; Rosen, J.

    This paper describes the requirements and design of the Pan-STARRS PS1 Published Science Products Subsystem (PSPS) that constitutes the primary distribution tool for the very large amount of science data products produced by the Pan-STARRS PS1 prototype telescope. The data management challenges are identified in terms of stressing characteristics: dynamic, fast, spatial, and large; these are countered by mitigating characteristics: simple and lenient. This combination of characteristics is not only distinctly more demanding than traditional survey astronomy data managers, but lies at the boundaries of current commercially available data management technology. The requirements imposed on the PSPS result in devising a design strategy at the boundaries of currently available data management technology. In particular, we describe the capabilities and characteristics of the four main PS1 PSPS components: the Web-Based Interface (WBI), the Data Retrieval Layer (DRL), the Object Data Manager (ODM), and the Solar System Data Manager (SSDM). Potential architectural strategies are examined in the context of the stressing and mitigating characteristics with the conclusion that the ODM should follow an architectural concept that emphasizes the pooling of application, processing, and storage resources. The PS1 PSPS is specifically designed to support the PS1 science mission (see K.C. Chambers et al., these proceedings) while at the same time providing substantial design direction for a future PSPS component of the final PS4 Pan-STARRS. Finally, the limitations and possible scalability of the PS1 design relative to PS4 are discussed.

  17. The ATLAS PanDA Pilot in Operation

    NASA Astrophysics Data System (ADS)

    Nilsson, P.; Caballero, J.; De, K.; Maeno, T.; Stradling, A.; Wenaus, T.; ATLAS Collaboration

    2011-12-01

    The Production and Distributed Analysis system (PanDA) [1-2] was designed to meet ATLAS [3] requirements for a data-driven workload management system capable of operating at LHC data processing scale. Submitted jobs are executed on worker nodes by pilot jobs sent to the grid sites by pilot factories. This paper provides an overview of the PanDA pilot [4] system and presents major features added in light of recent operational experience, including multi-job processing, advanced job recovery for jobs with output storage failures, gLExec [5-6] based identity switching from the generic pilot to the actual user, and other security measures. The PanDA system serves all ATLAS distributed processing and is the primary system for distributed analysis; it is currently used at over 100 sites worldwide. We analyze the performance of the pilot system in processing real LHC data on the OSG [7], EGI [8] and Nordugrid [9-10] infrastructures used by ATLAS, and describe plans for its evolution.

  18. Bioenergy and Biodiversity: Key Lessons from the Pan American Region.

    PubMed

    Kline, Keith L; Martinelli, Fernanda Silva; Mayer, Audrey L; Medeiros, Rodrigo; Oliveira, Camila Ortolan F; Sparovek, Gerd; Walter, Arnaldo; Venier, Lisa A

    2015-12-01

    Understanding how large-scale bioenergy production can affect biodiversity and ecosystems is important if society is to meet current and future sustainable development goals. A variety of bioenergy production systems have been established within different contexts throughout the Pan American region, with wide-ranging results in terms of documented and projected effects on biodiversity and ecosystems. The Pan American region is home to the majority of commercial bioenergy production and therefore the region offers a broad set of experiences and insights on both conflicts and opportunities for biodiversity and bioenergy. This paper synthesizes lessons learned focusing on experiences in Canada, the United States, and Brazil regarding the conflicts that can arise between bioenergy production and ecological conservation, and benefits that can be derived when bioenergy policies promote planning and more sustainable land-management systems. We propose a research agenda to address priority information gaps that are relevant to biodiversity concerns and related policy challenges in the Pan American region. PMID:26105970

  19. Inside the Pan-genome - Methods and Software Overview

    PubMed Central

    Guimarães, Luis Carlos; Florczak-Wyspianska, Jolanta; de Jesus, Leandro Benevides; Viana, Marcus Vinícius Canário; Silva, Artur; Ramos, Rommel Thiago Jucá; Soares, Siomar de Castro; Soares, Siomar de Castro

    2015-01-01

    The number of genomes that have been deposited in databases has increased exponentially after the advent of Next-Generation Sequencing (NGS), which produces high-throughput sequence data; this circumstance has demanded the development of new bioinformatics software and the creation of new areas, such as comparative genomics. In comparative genomics, the genetic content of an organism is compared against other organisms, which helps in the prediction of gene function and coding region sequences, identification of evolutionary events and determination of phylogenetic relationships. However, expanding comparative genomics to a large number of related bacteria, we can infer their lifestyles, gene repertoires and minimal genome size. In this context, a powerful approach called Pan-genome has been initiated and developed. This approach involves the genomic comparison of different strains of the same species, or even genus. Its main goal is to establish the total number of non-redundant genes that are present in a determined dataset. Pan-genome consists of three parts: core genome; accessory or dispensable genome; and species-specific or strain-specific genes. Furthermore, pan-genome is considered to be “open” as long as new genes are added significantly to the total repertoire for each new additional genome and “closed” when the newly added genomes cannot be inferred to significantly increase the total repertoire of the genes. To perform all of the required calculations, a substantial amount of software has been developed, based on orthologous and paralogous gene identification. PMID:27006628

  20. Pan1 regulates transitions between stages of clathrin-mediated endocytosis

    PubMed Central

    Bradford, Mary Katherine; Whitworth, Karen; Wendland, Beverly

    2015-01-01

    Endocytosis is a well-conserved process by which cells invaginate small portions of the plasma membrane to create vesicles containing extracellular and transmembrane cargo proteins. Dozens of proteins and hundreds of specific binding interactions are needed to coordinate and regulate these events. Saccharomyces cerevisiae is a powerful model system with which to study clathrin-mediated endocytosis (CME). Pan1 is believed to be a scaffolding protein due to its interactions with numerous proteins that act throughout the endocytic process. Previous research characterized many Pan1 binding interactions, but due to Pan1's essential nature, the exact mechanisms of Pan1's function in endocytosis have been difficult to define. We created a novel Pan1-degron allele, Pan1-AID, in which Pan1 can be specifically and efficiently degraded in <1 h upon addition of the plant hormone auxin. The loss of Pan1 caused a delay in endocytic progression and weakened connections between the coat/actin machinery and the membrane, leading to arrest in CME. In addition, we determined a critical role for the central region of Pan1 in endocytosis and viability. The regions important for endocytosis and viability can be separated, suggesting that Pan1 may have a distinct role in the cell that is essential for viability. PMID:25631817

  1. Global satellite retrievals of Peroxy Acetyl Nitrate (PAN) in the troposphere

    NASA Astrophysics Data System (ADS)

    Payne, V.; Alvarado, M.; Cady-Pereira, K. E.; Worden, J.; Kulawik, S. S.; Fischer, E. V.

    2013-12-01

    Peroxyacetyl Nitrate (PAN) is a thermally unstable reservoir for NOx that allows NOx to be transported over large distances, enabling ozone formation far downwind from the original source. Satellite retrievals of PAN could potentially provide substantial information on the fate of NOx emissions from a range of sources including biomass burning and anthropogenic combustion. PAN has previously been retrieved in the upper troposphere and lower stratosphere on a global scale from limb-sounding satellite instruments. PAN signatures have also been detected in nadir-viewing satellite observations of smoke plumes from fires. However, to our knowledge, PAN has not yet been retrieved in the nadir view on a global scale. Here we present global observations of tropospheric PAN from the Tropospheric Emission Spectrometer (TES), a thermal infrared spectrometer flying on the Aura satellite since 2004. PAN can be detected in TES spectra for cases where the PAN signal is above the instrument noise. The detection limit for a single TES measurement is dependent on the atmospheric and surface conditions. For observations where the cloud optical depth is less than 0.5, we find that the TES detection limit for PAN is in the region of 200 to 300 pptv. We present example distributions of elevated PAN concentrations associated with (1) trans-Pacific transport of Asian pollution, (2) boreal biomass burning and (3) the Tropical South Atlantic in austral spring.

  2. Dry deposition of peroxyacetyl nitrate (PAN): Determination of its deposition velocity at night from measurements of the atmospheric PAN and 222Radon concentration gradient

    NASA Astrophysics Data System (ADS)

    Schrimpf, Wolfram; Lienaerts, Karlheinz; Müller, Klaus Peter; Rudolph, Jochen; Neubert, Rolf; Schüßler, Wolfram; Levin, Ingeborg

    During the field campaign POPCORN (Photooxidant Formation by Plant Emitted Compounds and OH-Radicals in North-Eastern Germany) in August 1994 we measured the nighttime deposition velocities of PAN above a corn field. These are the first absolute measurements of PAN deposition velocities in the field. The deposition velocities were derived using a novel method, which uses measurements of the gradients of PAN and 222Rn and of the emission rates of 222Rn from the soil. A unique data set of about 250 field measurements of the PAN deposition velocity at night was thus obtained. The deposition velocity at night proved to be highly variable with an average of 0.54 cm/s and a standard deviation of 0.94 cm/s. Recent presumptions by Shepson et al. [1992] that the PAN deposition velocity is strongly reduced with increasing relative humidity could not be confirmed by our measurements.

  3. The Pan-STARRS search for Near Earth Objects

    NASA Astrophysics Data System (ADS)

    Wainscoat, Richard J.; Chambers, Kenneth; Lilly, Eva; Weryk, Robert; Chastel, Serge; Denneau, Larry; Micheli, Marco

    2015-11-01

    The two Pan-STARRS telescopes, located on Haleakala, Hawaii, are 1.8-meter diameter telescopes equipped with 1.4 Gigapixel cameras that deliver 7 square degree fields of view. The first telescope, Pan-STARRS1 (PS1), has been conducting a survey for Near-Earth Objects. The second telescope, Pan-STARRS2 (PS2) is nearing completion. The telescope was commissioned using an incomplete focal plane with only 18 good detectors (60 required). The camera is presently being upgraded, and will be operated from October 2015 with 60 detectors (some engineering grade). A final upgrade to the camera in early 2016 will make the telescope fully operational.The two telescopes survey much of the sky accessible from Haleakala multiple times each lunation. The area surveyed ranges from +90 degrees in the north down to -47.5 degrees declination in the south. The “sweet spots” close to the Sun have been productive in discovery of large objects.The PS1 survey is becoming more mature and productive, having discovered more than half of all NEOs in 2015 to date, and more than 60% of the larger NEOs and PHAs discovered in 2015. Both PS1 and PS2 deliver excellent astrometry and photometry. PS1 continues to discover a significant number of large (> 1km) NEOs. PS1 has become the leading discover of comets, discovering more than half of the new comets in both 2014 and 2015.In good weather conditions, the discovery rate of NEO candidates by PS1 overwhelms the external NEO followup resources. particularly for fainter NEOs. As a result, we needed to repeat fields to recover NEO candidates. As PS2 matures, with a complete focal plane, and when the G96 camera upgrade is complete, the combination of these three telescopes will facilitate a higher NEO discovery rate, a better census of the NEOs in the sky, and better orbits for NEOs. This will in turn lead to a better understanding of the size and orbit distribution of NEOs. The Pan-STARRS NEO survey is also likely to discover asteroids suitable for

  4. The Pan-STARRS search for near-Earth objects

    NASA Astrophysics Data System (ADS)

    Wainscoat, R.; Veres, P.; Bolin, B.; Denneau, L.; Jedicke, R.; Chastel, S.; Micheli, M.

    2014-07-01

    The Pan-STARRS1 (PS1) telescope, located on Haleakala, Maui, Hawaii, is a 1.8-meter diameter wide-field survey telescope. It is equipped with the largest digital camera in the world, with almost 1.4 billion pixels, and images an area of sky of 7 square degrees. During the last 3 years, PS1 has been conducting a multipurpose survey ranging from a search for Near Earth Objects (NEOs) to cosmology. During this survey, 11 % of the observing time was dedicated to a search for NEOs. During that time, PS1 became the leading telescope in terms of discovery of NEOs and Potentially Hazardous Asteroids (PHAs). PS1 has also become an important discovery telescope for comets, and has discovered numerous main belt comets, including the recent discoveries of P/2013 P5 and P/2013 R3. The multipurpose survey being conducted by PS1 finished in February 2014, and 100 % of the observing time on PS1 is now dedicated to a search for Near Earth Objects. The primary region that is being searched is the 60 × 60 degree region around opposition (subject to observability from Hawaii's latitude, and avoiding high star density regions close to the Galactic plane). The sweet spot regions close to the Sun are also being searched. The result will be a deep multi-epoch survey of the ecliptic spanning at least 3 years. A second Pan-STARRS telescope (PS2), located adjacent to PS1, is nearing completion and will soon also be surveying the night sky for NEOs. The second telescope will allow us to survey much of the available sky on at least four epochs per month. The much larger amount of observing time dedicated to the NEO search will allow a much more systematic survey to be conducted, and this will result in better insight into the size and orbital distribution of NEOs. One of the strengths of Pan-STARRS is that the depth of its observations enables it to discover large undiscovered NEOs that are more distant from Earth. Pan-STARRS is less efficient at discovering small nearby NEOs that are fast

  5. Multi-component testing using HZ-PAN and AgZ-PAN Sorbents for OSPREY Model validation

    SciTech Connect

    Garn, Troy G.; Greenhalgh, Mitchell; Lyon, Kevin L.; Law, Jack D.

    2015-04-01

    In efforts to further develop the capability of the Off-gas SeParation and RecoverY (OSPREY) model, multi-component tests were completed using both HZ-PAN and AgZ-PAN sorbents. The primary purpose of this effort was to obtain multi-component xenon and krypton capacities for comparison to future OSPREY predicted multi-component capacities using previously acquired Langmuir equilibrium parameters determined from single component isotherms. Experimental capacities were determined for each sorbent using two feed gas compositions of 1000 ppmv xenon and 150 ppmv krypton in either a helium or air balance. Test temperatures were consistently held at 220 K and the gas flowrate was 50 sccm. Capacities were calculated from breakthrough curves using TableCurve® 2D software by Jandel Scientific. The HZ-PAN sorbent was tested in the custom designed cryostat while the AgZ-PAN was tested in a newly installed cooling apparatus. Previous modeling validation efforts indicated the OSPREY model can be used to effectively predict single component xenon and krypton capacities for both engineered form sorbents. Results indicated good agreement with the experimental and predicted capacity values for both krypton and xenon on the sorbents. Overall, the model predicted slightly elevated capacities for both gases which can be partially attributed to the estimation of the parameters and the uncertainty associated with the experimental measurements. Currently, OSPREY is configured such that one species adsorbs and one does not (i.e. krypton in helium). Modification of OSPREY code is currently being performed to incorporate multiple adsorbing species and non-ideal interactions of gas phase species with the sorbent and adsorbed phases. Once these modifications are complete, the sorbent capacities determined in the present work will be used to validate OSPREY multicomponent adsorption predictions.

  6. Evolution of the ATLAS PanDA workload management system for exascale computational science

    NASA Astrophysics Data System (ADS)

    Maeno, T.; De, K.; Klimentov, A.; Nilsson, P.; Oleynik, D.; Panitkin, S.; Petrosyan, A.; Schovancova, J.; Vaniachine, A.; Wenaus, T.; Yu, D.; Atlas Collaboration

    2014-06-01

    An important foundation underlying the impressive success of data processing and analysis in the ATLAS experiment [1] at the LHC [2] is the Production and Distributed Analysis (PanDA) workload management system [3]. PanDA was designed specifically for ATLAS and proved to be highly successful in meeting all the distributed computing needs of the experiment. However, the core design of PanDA is not experiment specific. The PanDA workload management system is capable of meeting the needs of other data intensive scientific applications. Alpha-Magnetic Spectrometer [4], an astro-particle experiment on the International Space Station, and the Compact Muon Solenoid [5], an LHC experiment, have successfully evaluated PanDA and are pursuing its adoption. In this paper, a description of the new program of work to develop a generic version of PanDA will be given, as well as the progress in extending PanDA's capabilities to support supercomputers and clouds and to leverage intelligent networking. PanDA has demonstrated at a very large scale the value of automated dynamic brokering of diverse workloads across distributed computing resources. The next generation of PanDA will allow other data-intensive sciences and a wider exascale community employing a variety of computing platforms to benefit from ATLAS' experience and proven tools.

  7. Peroxyacetyl nitrate (PAN) measurements at a remote site in New Mexico

    SciTech Connect

    Prestbo, E. ); Gaffney, J.S. )

    1988-09-01

    Photochemical oxidants are not limited to the criteria pollutant, ozone. Peroxyactyl nitrate (PAN) is probably one of the better known non-criteria oxidants. PAN was originally referred to as compound X, as it caused a unique type of plant damage to numerous crops in southern California. PAN was associated with Los Angeles photochemical smog and ozone in the late 1950s and 60s. It should not be confused with X-agent which has also been associated with photochemical oxidants. PAN has been found to be an important means of transporting NOx in remote regions. This is due to its rather long atmospheric lifetime. It reacts slowly with OH radical, is photochemically stable, and has a low water solubility. Its principal loss is due to unimolecular decomposition. The authors have been making ozone, NO, NO{sup 2}, and PAN measurements at a remote site near Los Alamos, New Mexico for an extended period of time. An automated gas chromatograph equipped with an electron capture detector is used to make the PAN measurements. Diffusion tubes with PAN/n-tridecane solutions are used to calibrate the instrument. Typical PAN data obtained at the sight are presented. The collected PAN and oxidant data are examined, and have been modeled to determine the possible concentrations of peracetic acid and methyl hydroperoxide in remote air. These studies are discussed in light of their possible implications for peroxide contributions to environmental impacts and aqueous chemistry reactions.

  8. Evaluation of chemopreventive effects of betel leaf on the genotoxicity of pan masala.

    PubMed

    Trivedi, A H; Patel, R K; Rawal, U M; Adhvaryu, S G; Balar, D B

    1994-01-01

    The antigenotoxic effect of the aqueous extract of betel leaf (BL-ext.) against the pan masala was tested with the help of cytogenetic endpoints like chromosome aberration (CA) and sister chromatid exchange (SCE) utilizing Chinese hamster ovary (CHO) cells. Compared to the cultures treated with aqueous extract of pan masala alone, a reduction in CA and SCE frequencies in CHO cells was observed following a combined treatment with pan masala (with or without tobacco) extract and BL-ext. The protective effect of BL-ext. against the genomic damage caused by pan masala was statistically significant only after treating the cells for a longer period. PMID:7935987

  9. Application of a Sequential Reaction Model to PANS and Aldehyde Measurements in Two Urban Areas

    SciTech Connect

    Roberts, James M.; Stroud, C.; Jobson, B Tom T.; Trainer, Michael; Hereid, D.; Williams, E. J.; Fehsenfeld, Fred C.; Brune, W. H.; Martinez, M.; Harder, H.

    2001-12-15

    Measurements of peroxycarboxylic nitric anhydrides (= PAN, PPN, MPAN) and aldehydes (acetaldehyde, propanal, and methacrolein) were made at Nashville, Tennessee, in 1999 and Houston, Texas, in 2000. The data were interpreted with a sequential reaction model that included reaction of aldehydes with hydroxl radical and formation or loss of PANs mediated by peroxyacyl radicals. The comparison of the measured ratios with those predicted by the model showed disagreement for PAN/acetaldehyde and PPN/propanal in Nashville but agreement in Houston. These features are consistent with the relative importance of isoprene to PAN formation at each site.

  10. The Pan-STARRS Survey for Transients (PSST)

    NASA Astrophysics Data System (ADS)

    Huber, Mark; Carter Chambers, Kenneth; Flewelling, Heather; Smartt, Stephen J.; Smith, Ken; Wright, Darryl

    2015-08-01

    The Pan-STARRS1 (PS1) Science Consortium finished the 3Pi survey of the whole sky north of -30 degrees between 2010-2014 in grizy (PS1 specific filters) and the PS1 telescope has been running a wide-field survey for near earth objects, funded by NASA through the NEO Observation Program. This survey takes data in a w-band (wide-band filter spanning g,r,i) in dark time, and combinations of r, i, z and y during bright time. We are now processing these data through the Pan-STARRS IPP difference imaging pipeline and recovering stationary transients. Effectively the 3Pi survey for transients that started during the PS1 Science Consortium is being continued under the new NEO optimized operations mode. The observing procedure in this case is to take a quad of exposures, typically 30-45 seconds separated by 10-20 minutes each, typically revealing high confidence transients (greater than 5-sigma) to depths of i~ 20.7, y~18.3 (AB mags). This cadence may be repeated on subsequent nights in a return pointing.Continuing the public release of the first 880 transients from the PS1 3Pi survey during the search period September 2013 - January 2014, beginning February 2015, the transient events using the data from the the Pan-STARRS NEO Science Consortium are now regularly added. These are mostly supernova candidates, but the list also contains some variable stars, AGN, and nuclear transients. The light curves are too sparsely sampled to be of standalone use, but they may be of use to the community in combining with existing data (e.g. Fraser et al. 2013, ApJ, 779, L8), constraining explosion and rise times (e.g. Nicholl et al. 2013, Nature, 502, 346) as well as many being new discoveries.For additional details visit http://star.pst.qub.ac.uk/ps1threepi/

  11. Pan-European Chikungunya surveillance: designing risk stratified surveillance zones.

    PubMed

    Tilston, Natasha; Skelly, Chris; Weinstein, Phil

    2009-01-01

    The first documented transmission of Chikungunya within Europe took place in Italy during the summer of 2007. Chikungunya, a viral infection affecting millions of people across Africa and Asia, can be debilitating and no prophylactic treatment exists. Although imported cases are reported frequently across Europe, 2007 was the first confirmed European outbreak and available evidence suggests that Aedes albopictus was the vector responsible and the index case was a visitor from India. This paper proposed pan-European surveillance zones for Chikungunya, based on the climatic conditions necessary for vector activity and viral transmission. Pan-European surveillance provides the best hope for an early-warning of outbreaks, because national boundaries do not play a role in defining the risk of this new vector borne disease threat. A review of climates, where Chikungunya has been active, was used to inform the delineation of three pan-European surveillance zones. These vary in size each month across the June-September period of greatest risk. The zones stretch across southern Europe from Portugal to Turkey. Although the focus of this study was to define the geography of potential surveillance zones based on the climatic limits on the vector and virus, a preliminary examination of inward bound airline passengers was also undertaken. This indicated that France and Italy are likely to be at greater risk due to the number of visitors they receive from Chikungunya active regions, principally viraemic visitors from India. Therefore this study represents a first attempt at creating risk stratified surveillance zones, which we believe could be usefully refined with the use of higher resolution climate data and more complete air travel data. PMID:19878588

  12. The Cancer Genome Atlas Pan-Cancer analysis project.

    PubMed

    Weinstein, John N; Collisson, Eric A; Mills, Gordon B; Shaw, Kenna R Mills; Ozenberger, Brad A; Ellrott, Kyle; Shmulevich, Ilya; Sander, Chris; Stuart, Joshua M

    2013-10-01

    The Cancer Genome Atlas (TCGA) Research Network has profiled and analyzed large numbers of human tumors to discover molecular aberrations at the DNA, RNA, protein and epigenetic levels. The resulting rich data provide a major opportunity to develop an integrated picture of commonalities, differences and emergent themes across tumor lineages. The Pan-Cancer initiative compares the first 12 tumor types profiled by TCGA. Analysis of the molecular aberrations and their functional roles across tumor types will teach us how to extend therapies effective in one cancer type to others with a similar genomic profile. PMID:24071849

  13. THE PHOTOMETRIC CLASSIFICATION SERVER FOR Pan-STARRS1

    SciTech Connect

    Saglia, R. P.; Bender, R.; Seitz, S.; Senger, R.; Snigula, J.; Phleps, S.; Wilman, D.; Tonry, J. L.; Burgett, W. S.; Chambers, K. C.; Heasley, J. N.; Kaiser, N.; Magnier, E. A.; Morgan, J. S.; Greisel, N.; Bailer-Jones, C. A. L.; Klement, R. J.; Rix, H.-W.; Smith, K.; Green, P. J.; and others

    2012-02-20

    The Pan-STARRS1 survey is obtaining multi-epoch imaging in five bands (g{sub P1} r{sub P1} i{sub P1} z{sub P1} y{sub P1}) over the entire sky north of declination -30 deg. We describe here the implementation of the Photometric Classification Server (PCS) for Pan-STARRS1. PCS will allow the automatic classification of objects into star/galaxy/quasar classes based on colors and the measurement of photometric redshifts for extragalactic objects, and will constrain stellar parameters for stellar objects, working at the catalog level. We present tests of the system based on high signal-to-noise photometry derived from the Medium-Deep Fields of Pan-STARRS1, using available spectroscopic surveys as training and/or verification sets. We show that the Pan-STARRS1 photometry delivers classifications and photometric redshifts as good as the Sloan Digital Sky Survey (SDSS) photometry to the same magnitude limits. In particular, our preliminary results, based on this relatively limited data set down to the SDSS spectroscopic limits, and therefore potentially improvable, show that stars are correctly classified as such in 85% of cases, galaxies in 97%, and QSOs in 84%. False positives are less than 1% for galaxies, Almost-Equal-To 19% for stars, and Almost-Equal-To 28% for QSOs. Moreover, photometric redshifts for 1000 luminous red galaxies up to redshift 0.5 are determined to 2.4% precision (defined as 1.48 Multiplication-Sign Median|z{sub phot} - z{sub spec}|/(1 + z)) with just 0.4% catastrophic outliers and small (-0.5%) residual bias. For bluer galaxies up to the same redshift, the residual bias (on average -0.5%) trend, percentage of catastrophic failures (1.2%), and precision (4.2%) are higher, but still interestingly small for many science applications. Good photometric redshifts (to 5%) can be obtained for at most 60% of the QSOs of the sample. PCS will create a value-added catalog with classifications and photometric redshifts for eventually many millions of sources.

  14. Assessing Vulnerability to Drought on a pan-European scale

    NASA Astrophysics Data System (ADS)

    Urquijo, Julia; De Stefano, Lucia; González-Tánago, Itziar; Blauhut, Veit; Stahl, Kerstin

    2014-05-01

    During the past decade, a number of theoretical frameworks have been defined within the Disaster Risk Reduction and Climate Change communities to assess drought vulnerability at different scales, sectors, socio-political contexts, and geo-climatic conditions. However, there is still little consensus around the criteria, dimensions and factors used in these assessments; and none of them has been applied at a pan-European scale. This is due to a triple complexity. Firstly, drought as a natural hazard is a complex phenomenon due to the difficulty of determining its onset and its multiscale, multifaceted and dynamic nature. Secondly, there is an on-going debate regarding the concept of vulnerability and its constitutive elements, together with an important diversity of theoretical approaches to assess it. Finally, Europe's diversity in bioclimatic conditions, national water use practice and water use policies adds a challenging characteristic for working on pan-European scale. This work addresses the challenge of defining a methodological approach to the assessment of vulnerability factors to drought at a pan-European scale. For this purpose, we first review existing conceptual frameworks as well as of past initiatives for drought vulnerability assessment. The literature review showed that the high complexity of drought vulnerability assessment requires a clear definition of the concept of vulnerability and the associated terms, and that, before undertaking any assessment, it is necessary to clearly define the "vulnerable unit" i.e. replying to the questions 'whose vulnerability is being assessed?' and 'vulnerability to what type of impact?'. In this context, this work proposes the application of a factor-based approach, consisting in the analysis of significant factors that influence vulnerability in the context of specific situations of potential vulnerability. Those situations are framed within the specific drought characteristics of four different geoclimatic macro

  15. Breaking the Deadlock: Lessons from Pan-Canadian Organizations.

    PubMed

    Zelmer, Jennifer

    2014-01-01

    The authors of the lead essay in this issue propose a set of fiscal and other levers for accelerating Canadian healthcare reform. Among the mechanisms they endorse is the concept of a learning health system, which would encourage collaboration and information sharing between jurisdictions. From health system performance measurement to exchange of best practices, a number of the foundational elements of learning health systems have parallels or antecedents in functions undertaken by pan-Canadian organizations that address healthcare issues relevant to multiple jurisdictions. Experiences and outcomes of these organizations may therefore be instructive when considering proposals for healthcare reform, such as those made by Gardner, Fierlbeck, and Levy. PMID:26187565

  16. The Pan-STARRS 1 Parallax and Proper Motion Catalog

    NASA Astrophysics Data System (ADS)

    Waters, Christopher Z.; Magnier, Eugene A.; Pan-STARRS Science Consortium

    2016-01-01

    The Pan-STARRS 1 3-Pi survey produced a catalog of more than three billion objects north of -30 declination with astrometric precision down to 10 milliarcseconds per observation. This excellent calibration and the multiple observations of each point of the sky over a five year internal baseline allow proper motions as small as 1-2 mas/year to be measured. The observational schedule has been designed to optimize parallax measurements for red objects. The final parallax and proper motion catalog will enable searches for and classification of stars in the local solar neighborhood, with proper motion searches extending to 200 parsecs.

  17. Share your sweets: Chimpanzee (Pan troglodytes) and bonobo (Pan paniscus) willingness to share highly attractive, monopolizable food sources.

    PubMed

    Byrnit, Jill T; Høgh-Olesen, Henrik; Makransky, Guido

    2015-08-01

    All over the world, humans (Homo sapiens) display resource-sharing behavior, and common patterns of sharing seem to exist across cultures. Humans are not the only primates to share, and observations from the wild have long documented food sharing behavior in our closest phylogenetic relatives, chimpanzees (Pan troglodytes) and bonobos (Pan paniscus). However, few controlled studies have been made in which groups of Pan are introduced to food items that may be shared or monopolized by a first food possessor, and very few studies have examined what happens to these sharing patterns if the food in question is a highly attractive, monopolizable food source. The one study to date to include food quality as the independent variable used different types of food as high- and low-value items, making differences in food divisibility and size potentially confounding factors. It was the aim of the present study to examine the sharing behavior of groups of captive chimpanzees and bonobos when introducing the same type of food (branches) manipulated to be of 2 different degrees of desirability (with or without syrup). Results showed that the large majority of food transfers in both species came about as sharing in which group members were allowed to cofeed or remove food from the stock of the food possessor, and the introduction of high-value food resulted in more sharing, not less. Food sharing behavior differed between species in that chimpanzees displayed significantly more begging behavior than bonobos. Bonobos, instead, engaged in sexual invitations, which the chimpanzees never did. (PsycINFO Database Record PMID:26075515

  18. Superluminous Supernovae: A Pan-STARRS1 Perspective

    NASA Astrophysics Data System (ADS)

    Lunnan, Ragnhild; Chornock, Ryan; Berger, Edo; Pan-Starrs1 Cfa/Jhu Transient Team

    2015-01-01

    Wide-field optical time-domain surveys like Pan-STARRS and PTF provide an opportunity to discover and decipher new types of transients. One such discovery in the past decade is a new class of "superluminous" supernovae (SLSNe), which have bolometric luminosities 10-100 times those of normal core-collapse and Type Ia SN and spectra that do not match known supernova classes. These SLSNe represent a challenge to our understanding of the deaths of massive stars, the mechanism for powering optical emission in SNe, and to the standard core-collapse picture. In this talk, I will present results from the Pan-STARRS1 Medium Deep Survey, which has discovered ~20 SLSNe out to redshift 1.6 in its four years of operation. I will address the nature of SLSNe from two angles: 1) by characterizing the explosions themselves and comparing the observed properties to model predictions, and 2) by constraining the progenitor population through a comprehensive study of SLSN host galaxy environments.

  19. A Pan-African thermal event in southern India

    NASA Astrophysics Data System (ADS)

    Miller, Jonathan S.; Santosh, M.; Pressley, Rachel A.; Clements, Alina S.; Rogers, John J. W.

    UPb zircon data from five igneous suites confirm previous studies that demonstrated widespread Pan-African magmatism in the Granulite Terrain of southern India. Ages determined here are ˜560 Ma for the Peralimala Granite and ˜555 Ma for the Kalpatta Granite, both north of the Palghat-Cauvery lineament, and ˜585 Ma for a charnockite in the Cardamom massif south of the lineament. Zircon from a pegmatite in the Kerala khondalite belt at Melankode yields an age of 512 Ma. Resetting of zircons in the 2500-Ma Arsikere Granite of the western Dharwar craton probably occurred at ˜450 Ma. These ages and the concentration of Pan-African granitic magmatism around the Indian portion of a broad region of granulite-facies metamorphism in East Gondwana demostrates generation of a restricted area of high temperature either above a rising plume or a zone of rifting. Mantle-derived fluids continued to move upward through the crust of southern India for at least 100 m.y. after the peak of magmatism, and the entire region was still cooling at 400 Ma.

  20. An Alternative Strategy for Pan-acetyl-lysine Antibody Generation.

    PubMed

    Kim, Sun-Yee; Sim, Choon Kiat; Zhang, Qiongyi; Tang, Hui; Brunmeir, Reinhard; Pan, Hong; Karnani, Neerja; Han, Weiping; Zhang, Kangling; Xu, Feng

    2016-01-01

    Lysine acetylation is an important post-translational modification in cell signaling. In acetylome studies, a high-quality pan-acetyl-lysine antibody is key to successful enrichment of acetylated peptides for subsequent mass spectrometry analysis. Here we show an alternative method to generate polyclonal pan-acetyl-lysine antibodies using a synthesized random library of acetylated peptides as the antigen. Our antibodies are tested to be specific for acetyl-lysine peptides/proteins via ELISA and dot blot. When pooled, five of our antibodies show broad reactivity to acetyl-lysine peptides, complementing a commercial antibody in terms of peptide coverage. The consensus sequence of peptides bound by our antibody cocktail differs slightly from that of the commercial antibody. Lastly, our antibodies are tested in a proof-of-concept to analyze the acetylome of HEK293 cells. In total we identified 1557 acetylated peptides from 416 proteins. We thus demonstrated that our antibodies are well-qualified for acetylome studies and can complement existing commercial antibodies. PMID:27606599

  1. The ExoMars PanCam Instrument

    NASA Astrophysics Data System (ADS)

    Griffiths, Andrew; Coates, Andrew; Muller, Jan-Peter; Jaumann, Ralf; Josset, Jean-Luc; Paar, Gerhard; Barnes, David

    2010-05-01

    The ExoMars mission has evolved into a joint European-US mission to deliver a trace gas orbiter and a pair of rovers to Mars in 2016 and 2018 respectively. The European rover will carry the Pasteur exobiology payload including the 1.56 kg Panoramic Camera. PanCam will provide multispectral stereo images with 34 deg horizontal field-of-view (580 microrad/pixel) Wide-Angle Cameras (WAC) and (83 microrad/pixel) colour monoscopic "zoom" images with 5 deg horizontal field-of-view High Resolution Camera (HRC). The stereo Wide Angle Cameras (WAC) are based on Beagle 2 Stereo Camera System heritage [1]. Integrated with the WACs and HRC into the PanCam optical bench (which helps the instrument meet its planetary protection requirements) is the PanCam interface unit (PIU); which provides image storage, a Spacewire interface to the rover and DC-DC power conversion. The Panoramic Camera instrument is designed to fulfil the digital terrain mapping requirements of the mission [2] as well as providing multispectral geological imaging, colour and stereo panoramic images and solar images for water vapour abundance and dust optical depth measurements. The High Resolution Camera (HRC) can be used for high resolution imaging of interesting targets detected in the WAC panoramas and of inaccessible locations on crater or valley walls. Additionally HRC will be used to observe retrieved subsurface samples before ingestion into the rest of the Pasteur payload. In short, PanCam provides the overview and context for the ExoMars experiment locations, required to enable the exobiology aims of the mission. In addition to these baseline capabilities further enhancements are possible to PanCam to enhance it's effectiveness for astrobiology and planetary exploration: 1. Rover Inspection Mirror (RIM) 2. Organics Detection by Fluorescence Excitation (ODFE) LEDs [3-6] 3. UVIS broadband UV Flux and Opacity Determination (UVFOD) photodiode This paper will discuss the scientific objectives and resource

  2. The Superresolved Super Pan: Improved Resolution of the Mars Pathfinder Landing Site Using Superresolution on the IMP Super Pan Data Set

    NASA Technical Reports Server (NTRS)

    Stoker, Carol; Kanefsky, Bob

    2000-01-01

    The Imager for Mars Pathfinder Super Pan image cubes were combined using Superresolution to produce a data set with a factor of two higher spatial resolution than the starting products. The data product is presented.

  3. Sampling Bee Communities (Hymenoptera: Apiformes) in a Desert Landscape: Are Pan Traps Sufficient?

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Pan traps (colored plastic bowls) are frequently used as efficient standardized method of sampling bee faunas. We explored the utility of pan traps in three colors compared to net collecting using simultaneous sampling at biweekly intervals throughout the flowering season (May-Sep) at 11 sites in t...

  4. Evaluation of Pan Coefficients for Estimating Reference Evapotranspiration in Southern Taiwan

    NASA Astrophysics Data System (ADS)

    Yeh, H.

    2006-12-01

    Evapotranspiration is an important process of water transfer in the hydrosphere and atmosphere, which plays an active role in the hydrological cycle. Evaporation pan (Epan) data are often used to estimate reference evapotranspiration (ETref) for use in water resource planning. Generally, ETref is estimated as the product of the Epan data and a pan coefficient (Kpan). However, reliable estimation of ETref using Epan depends on the accurate determination of pan coefficients Kpan. Many different methods for estimating ETref have been developed, among which the Penman-Monteith method is demonstrated to be especially excellent by the Food and Agriculture Organization (FAO). In this study, the Penman-Monteith reference evapotranspiration, pan evaporation, and pan coefficient are calculated, compared and regionally mapped at nine meteorological stations during 1990-2004 in Southern Taiwan. The results show the reference evapotranspiration and pan evaporation have similar regional distribution patterns in the southern Taiwan both with the highest values being in the lower region and the lowest values being in the upper region. In addition, the pan coefficient, Kpan, varies both regionally and seasonally. Smallest Kpan values are found in the upper reach of the southern Taiwan, meaning that the relative difference between the reference evapotranspiration and pan evaporation is the biggest in the region, the largest Kpan values are obtained in the western area of southern Taiwan. This distribution pattern provides valuable information for regional hydrological studies since it is one of the most important factors determining regional actual evapotranspiration.

  5. A method for installing zero-tension pan and wick lysimeters in soil

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Zero-tension pan lysimeters and passive capillary fiberglass wick lysimeters are useful in determining water quality and volumetric aspects of subsurface water flow. Installation of pan and wick lysimeters beneath undisturbed soil may be complicated by the tendency for the soil to cave-in as the lys...

  6. Mass spectral determination of phenylacetonitrile (PAN) levels in body tissues of adult desert locust, Schistocerca gregaria

    Technology Transfer Automated Retrieval System (TEKTRAN)

    : Wings and legs of the gregarious desert locust, Schistocerca gregaria have been shown to be release sites of phenylacetonitrile (PAN), the major adult male-produced pheromone. However, there is limited information on the distribution of PAN within the locust. Here we show, using gas chromatograph...

  7. Pan American World Airways flight training: A new direction. Flight operations resource management

    NASA Technical Reports Server (NTRS)

    Butler, Roy

    1987-01-01

    The Pan Am Flight Training Department shares the experiences it is having in its attempt to integrate cockpit resource management philosophies into its training programs. A slide-tape presentation on Pan Am's new direction in flight training is presented and briefly discussed.

  8. Diurnal and vertical variations of peroxyacetyl nitrate (PAN) at Mt. Taehwa near Seoul Metropolitan Areas

    NASA Astrophysics Data System (ADS)

    Shim, H.; Lee, M.; Song, D.; Lee, G.; Kim, S.

    2013-12-01

    Peroxyacetyl nitrate (PAN), O3, and its precursors were measured at six heights of a 40m tower in Mt. Taehwa near Seoul Metropolitan Areas during August 2011, and April-June and October 2012. Volatile organic compounds were determined using PTR-QMS (proton transfer reaction-quadrupole mass spectrometry). The maximum concentrations of isoprene and monoterpene were visible in the late afternoon and night, respectively and at ~15 m right below the canopy. The diurnal variations of PAN and O3, often showed a pronounced second peak after 5 PM, which was accompanied with elevated NO2 and CO. The occurrence of elevated PAN and other pollutants was more noticeable at the top layers over the canopy than near the surface. It suggests that the preformed PAN was transported from nearby cities. These two types of PAN peaks were distinguished by the relative enhancement of PAN against O3. The vertical profiles of PAN and O3 indicate that the deposition loss of PAN was less evident than that of O3. More detailed results will be presented at the meeting.

  9. Inactivation of the panE Gene in Lactococcus lactis Enhances Formation of Cheese Aroma Compounds

    PubMed Central

    de Cadiñanos, Luz P. Gómez; García-Cayuela, Tomás; Yvon, Mireille; Martinez-Cuesta, M. Carmen; Peláez, Carmen

    2013-01-01

    Hydroxyacid dehydrogenases limit the conversion of α-keto acids into aroma compounds. Here we report that inactivation of the panE gene, encoding the α-hydroxyacid dehydrogenase activity in Lactococcus lactis, enhanced the formation of 3-methylbutanal and 3-methylbutanol. L. lactis IFPL953ΔpanE was an efficient strain producing volatile compounds related to cheese aroma. PMID:23524675

  10. Great apes' (Pan troglodytes, Pan paniscus, Gorilla gorilla, Pongo pygmaeus) understanding of tool functional properties after limited experience.

    PubMed

    Herrmann, Esther; Wobber, Victoria; Call, Josep

    2008-05-01

    Primates' understanding of tool functionality has been investigated extensively using a paradigm in which subjects are presented with a tool that they must use to obtain an out-of-reach reward. After being given experience on an initial problem, monkeys can transfer their skill to tools of different shapes while ignoring irrelevant tool changes (e.g., color). In contrast, monkeys without initial training perform poorly on the same tasks. Compared to most monkeys, great apes show a clear propensity for tool using and may not require as much experience to succeed on tool functionality tasks. We investigated this question by presenting 171 apes (Pan troglodytes, Pan paniscus, Gorilla gorilla, and Pongo pygmaeus) with several tool-use problems without giving them initial training or familiarizing them with the test materials. Apes succeeded without experience, but only on problems based on basic properties such as the reward being supported by an object. However, only minimal experience was sufficient to allow them to quickly improve their performance on more complex problems in which the reward was not in contact with the tool. PMID:18489238

  11. Source analysis of peroxyacetyl nitrate (PAN) in Guangzhou, China: a yearlong observation study

    NASA Astrophysics Data System (ADS)

    Wang, B. G.; Zhu, D.; Zou, Y.; Wang, H.; Zhou, L.; Ouyang, X.; Shao, H. F.; Deng, X. J.

    2015-06-01

    In recent years, photochemical smog has been a major cause of air pollution in the metropolitan area of Guangzhou, China, with a continuing increase in the concentrations of photochemical pollutants. The concentration of peroxyacetyl nitrate (PAN) has often been found to reach very high levels, posing a potential threat to the public health. To better understand the changes in PAN concentration and its sources, a study was carried from January to December of 2012 at the Guangzhou Panyu Atmospheric Composition Station (GPACS) to measure the atmospheric concentrations of PAN as well as those of ozone (O3), nitrogen oxides (NOx), and non-methane hydrocarbon (NMHC). These data were analyzed to investigate the quantitative relationships between PAN and its precursors. In the study period, the hourly concentrations of PAN varied from below instrument detection limit to 12.0 ppbv. The yearly mean concentration of PAN was 0.84 ppbv, with the daily mean concentration exceeding 5 ppbv in 32 of the total observation days. Calculations indicate that among the measured NMHC species, alkenes accounted for 53 % of the total NMHC contribution to the PAN production, with aromatics and alkanes accounting for about 11 and 7 % of the total, respectively. During the period of our observation only a modest correlation was found between the concentrations of PAN and O3 for daytime hours, and observed PAN concentrations were relatively high even though the observed NMHCs/NOx ratio was low. This suggests regional air mass transport of pollutants had a major impact on the PAN concentrations in Guangzhou area.

  12. Evaluation of polyacrylonitrile (PAN) as a binding polymer for absorbers used to treat liquid radioactive wastes

    SciTech Connect

    Sebesta, F.; John, J.; Motl, A.; Stamberg, K.

    1995-11-01

    The chemical and radiation stability of polyacrylonitrile (PAN) in the form of beads (B-PAN), similar to the beads of composite absorbers, and one selected composite absorber (ammonium molybdophosphate, the active component in PAN binder [AMP-PAN], a prospective candidate for the treatment of acidic wastes) were studied. Aqueous 1M HNO{sub 3} + 1M NaNO{sub 3}, 1M NaOH + 1M NaNO{sub 3}, and 1M NaOH were chosen as simulants of DOE acidic and alkaline wastes. In addition,radiation stability was determined indistilled water. The chemical stability of B-PAN and AMP-PAN beads was tested for a period up to one month of contact with the solution at ambient temperature. The radiation stability of the beads was checked in a radiation dose range 10{sup 3}--10{sup 6} Gy (10{sup 5}--10{sup 8} rads). In acidic solutions the stability of PAN binder was proved not to be limited by either chemical or radiation decomposition. PAN binder may thus be used for preparing composite absorbers for treatment of acid wastes from DOE facilities. The same conclusion is valid for alkaline solutions with pH up to 13. In highly alkaline solutions (concentration of NAOH higher than I M) and in the presence of NaNO{sub 3}, the stability of the tested polyacrylonitrile polymer was sufficient for applications not extending over 10 days. Cross-linking of the polymer caused by ionizing radiation was found to have a positive influence on chemical stability. This effect enables a longer period of applicability of PAN-based composite absorbers. Because of the high sorption rate achievable with PAN-based absorbers, the stability achieved is sufficient for most applications in the DOE complex. The chemical stability of binding polymer may also be further improved by testing another, more suitable type of polymer from the broad family of polyacrylonitrile polymers.

  13. Results from the Pan-STARRS1 Sky Surveys

    NASA Astrophysics Data System (ADS)

    Chambers, Kenneth C.; PS1 Science Consortium

    2015-01-01

    Results from the Pan-STARRS1 Sky Surveys spanning the field of astronomy from Near Earth Objects to Cosmology will be presented.Scientific highlights from the PS1 Sky Surveys include: the photometric and astrometric reference catalog with unprecedented size, accuracy, and dynamic range discovery of 1200 NEO's, 120 PHAs, 60 comets; discovery of rotational break up as the origin of catastrophic disruption of solar system bodies; first free floating planet PSO 318-22 and other ultra-cool objects; first 3-dimensional map of dust in the Milky Way; new distances to molecular clouds; new stellar streams in the Milky Way and new globular clusters; new satellite galaxies of M31; eclipsing binaries in M31 - an important step for the distance ladder; micro-lensing events and other variables in M31: super-luminous and under-luminous stellar explosions; first clear tidal disruption of star by supermassive black hole; many new high redshift quasars; and a new determination of the dark energy equation of state from SnIa photometry.The nearly 4 year Pan-STARRS1 Science Mission has now completed. The reprocessing of the entire data set is underway. The Public Release of the entire image, catalog and metadata set of the PS1 Sky Surveys is scheduled for April 1, 2015 from the STScI MAST archive. It is expected that a great many more scientific results will come with community access to the data set.The Pan-STARRS1 Surveys have been made possible through contributions of the Institute for Astronomy of the University of Hawaii; the Max-Planck Society and its participating institutes: the Max Planck Institute for Astronomy, Heidelberg and the Max Planck Institute for Extraterrestrial Physics, Garching; The Johns Hopkins University; Durham University; the University of Edinburgh; Queen's University Belfast; the Harvard-Smithsonian Center for Astrophysics, the Las Cumbres Observatory Global Telescope Network Incorporated; the National Central University of Taiwan; the Space Telescope

  14. Food protection activities of the Pan American Health Organization.

    PubMed

    1994-03-01

    One of the most widespread health problems in the Caribbean and Latin America is contaminated food and foodborne illness. The Pan American Health Organization (PAHO) has been a major force in activities to strengthen food protection. The program within the regional Program of Technical Cooperation is administered by the Veterinary Public Health program and under the guidance of the Pan American Institute for Food protection and Zoonoses in Buenos Aires, Argentina. A food action plan for 1986-90 was established at the 1986 Pan American Sanitary Conference, and extended to cover 1991-95. Program activities during the 1990s covered cholera, epidemiologic surveillance, street food vendors, shellfish poisoning, meat, national programs, information systems, air catering, food irradiation, and tourism. The action plan for 1991-95 promoted greater political support and cooperation within and between related sectors and institutions, management, and education. The aims were to organize national integrated programs, to strengthen laboratory services, to strengthen inspection services, to establish epidemiologic surveillance systems, and to promote food protection through community participation. Program activities included the initiatives of the Veterinary Public Health Program in 1991 to distribute literature on the transmission of cholera by foods. Studies were conducted in Bolivia, Colombia, and Peru on food contamination. Microbiologists received training on standard methods for detecting Vibrio cholerae in foods. A working group of experts from 10 countries examined the issues and produced a guide for investigating the incidence of foodborne disease. PAHO has contributed to the formation of an Inter-American Network for Epidemiologic Surveillance of Foodborne Diseases. PAHO has worked to improve hygienic practices among street food vendors. Seminars on paralytic shellfish poisoning were conducted in 1990; the outcome was a network working to strengthen national

  15. Pan-Planets: Searching for hot Jupiters around cool dwarfs

    NASA Astrophysics Data System (ADS)

    Obermeier, C.; Koppenhoefer, J.; Saglia, R. P.; Henning, Th.; Bender, R.; Kodric, M.; Deacon, N.; Riffeser, A.; Burgett, W.; Chambers, K. C.; Draper, P. W.; Flewelling, H.; Hodapp, K. W.; Kaiser, N.; Kudritzki, R.-P.; Magnier, E. A.; Metcalfe, N.; Price, P. A.; Sweeney, W.; Wainscoat, R. J.; Waters, C.

    2016-03-01

    The Pan-Planets survey observed an area of 42 sq deg. in the galactic disk for about 165 h. The main scientific goal of the project is the detection of transiting planets around M dwarfs. We establish an efficient procedure for determining the stellar parameters Teff and log g of all sources using a method based on SED fitting, utilizing a three-dimensional dust map and proper motion information. In this way we identify more than 60 000 M dwarfs, which is by far the largest sample of low-mass stars observed in a transit survey to date. We present several planet candidates around M dwarfs and hotter stars that are currently being followed up. Using Monte Carlo simulations we calculate the detection efficiency of the Pan-Planets survey for different stellar and planetary populations. We expect to find 3.0+3.3-1.6 hot Jupiters around F, G, and K dwarfs with periods lower than 10 days based on the planet occurrence rates derived in previous surveys. For M dwarfs, the percentage of stars with a hot Jupiter is under debate. Theoretical models expect a lower occurrence rate than for larger main sequence stars. However, radial velocity surveys find upper limits of about 1% due to their small sample, while the Kepler survey finds a occurrence rate that we estimate to be at least 0.17b(+0.67-0.04) %, making it even higher than the determined fraction from OGLE-III for F, G and K stellar types, 0.14 (+0.15-0.076) %. With the large sample size of Pan-Planets, we are able to determine an occurrence rate of 0.11 (+0.37-0.02) % in case one of our candidates turns out to be a real detection. If, however, none of our candidates turn out to be true planets, we are able to put an upper limit of 0.34% with a 95% confidence on the hot Jupiter occurrence rate of M dwarfs. This limit is a significant improvement over previous estimates where the lowest limit published so far is 1.1% found in the WFCAM Transit Survey. Therefore we cannot yet confirm the theoretical prediction of a lower

  16. Visual kin recognition and family resemblance in chimpanzees (Pan troglodytes).

    PubMed

    Vokey, John R; Rendall, Drew; Tangen, Jason M; Parr, Lisa A; de Waal, Frans B M

    2004-06-01

    The male-offspring biased visual kin recognition in chimpanzees (Pan troglodytes) reported by L. A. Parr and F. B. M. de Waal (1999) was replicated with human (Homo sapiens) participants and a principal components analysis (PCA) of pixel maps of the chimpanzee face photos. With the same original materials and methods, both humans and the PCA produced the same asymmetry in kin recognition as found with the chimpanzees. The PCA suggested that the asymmetry was a function of differences in the distribution of global characteristics associated with the framing of the faces in the son and daughter test sets. Eliminating potential framing biases, either by cropping the photos tightly to the faces or by rebalancing the recognition foils, eliminated the asymmetry but not human participants' ability to recognize chimpanzee kin. PMID:15250806

  17. Social behavior shapes the chimpanzee pan-microbiome

    PubMed Central

    Moeller, Andrew H.; Foerster, Steffen; Wilson, Michael L.; Pusey, Anne E.; Hahn, Beatrice H.; Ochman, Howard

    2016-01-01

    Animal sociality facilitates the transmission of pathogenic microorganisms among hosts, but the extent to which sociality enables animals’ beneficial microbial associations is poorly understood. The question is critical because microbial communities, particularly those in the gut, are key regulators of host health. We show evidence that chimpanzee social interactions propagate microbial diversity in the gut microbiome both within and between host generations. Frequent social interaction promotes species richness within individual microbiomes as well as homogeneity among the gut community memberships of different chimpanzees. Sampling successive generations across multiple chimpanzee families suggests that infants inherited gut microorganisms primarily through social transmission. These results indicate that social behavior generates a pan-microbiome, preserving microbial diversity across evolutionary time scales and contributing to the evolution of host species–specific gut microbial communities. PMID:26824072

  18. A Pan-GTPase Inhibitor as a Molecular Probe

    PubMed Central

    Hong, Lin; Guo, Yuna; BasuRay, Soumik; Agola, Jacob O.; Romero, Elsa; Simpson, Denise S.; Schroeder, Chad E.; Simons, Peter; Waller, Anna; Garcia, Matthew; Carter, Mark; Ursu, Oleg; Gouveia, Kristine; Golden, Jennifer E.; Aubé, Jeffrey; Wandinger-Ness, Angela; Sklar, Larry A.

    2015-01-01

    Overactive GTPases have often been linked to human diseases. The available inhibitors are limited and have not progressed far in clinical trials. We report here a first-in-class small molecule pan-GTPase inhibitor discovered from a high throughput screening campaign. The compound CID1067700 inhibits multiple GTPases in biochemical, cellular protein and protein interaction, as well as cellular functional assays. In the biochemical and protein interaction assays, representative GTPases from Rho, Ras, and Rab, the three most generic subfamilies of the GTPases, were probed, while in the functional assays, physiological processes regulated by each of the three subfamilies of the GTPases were examined. The chemical functionalities essential for the activity of the compound were identified through structural derivatization. The compound is validated as a useful molecular probe upon which GTPase-targeting inhibitors with drug potentials might be developed. PMID:26247207

  19. [Cancer Genome Atlas Pan-cancer Analysis Project].

    PubMed

    Zhang, Kun; Wang, Hong

    2015-04-01

    Cancer can exhibit different forms depending on the site of origin, cell types, the different forms of genetic mutations which also affect cancer therapeutic effect. Although many genes have been demonstrated to change a direct result of the change in phenotype, however, many cancers lineage complex molecular mechanisms are still not fully elucidated. Therefore, The Cancer Genome Atlas (TCGA) Research Network analyzed a large human tumors, in order to find the molecular changes in DNA, RNA, protein and epigenetic level, The results contain a wealth of data provides us with an opportunity for common, personality and new ideas throughout the cancer lineages form a whole description. Pan-cancer genome program first compares the 12 kinds of cancer types. Analysis of different tumor molecular changes and their functions, will tell us how effective treatment method is applied to a similar phenotype of the tumor. PMID:25936886

  20. New evidence on imitation in an enculturated chimpanzee (Pan troglodytes).

    PubMed

    Carrasco, Lara; Posada, Sandra; Colell, Montserrat

    2009-11-01

    Imitation in the great apes continues to be an active field of research and one that is not free of controversy. Several studies suggest that these species do not tend to match the motor movements of the model they observe, but try to achieve the same results using their own methods (emulation of results). In the studies reviewed, gestures have been used very infrequently outside an intraspecific communicative context to evaluate imitation. In fact, the imitation of gestural actions has been tested only in 4 individual great apes. This study assessed a chimpanzee's (Pan troglodytes) ability to imitate 52 actions in 4 categories. The levels of accuracy attained by the subject in her imitations exceeded those described in previous studies. Moreover, contrary to the idea defended in some articles, the subject seemed to find it easier to imitate gestures than actions with objects. PMID:19929107

  1. The perception of causality in chimpanzees (Pan spp.).

    PubMed

    O'Connell, Sanjida; Dunbar, R I M

    2005-01-01

    Chimpanzees (Pan spp.) were tested on a habituation/dishabituation paradigm that was originally developed to test for comprehension of causality in very young human infants. Three versions of the test were used: a food item being moved by a hand, a human pushing another human off a chair to obtain a food item, and a film clip of natural chimpanzee behaviour (capturing and eating a monkey). Chimpanzees exhibited similar results to those obtained with human infants, with significantly elevated levels of looking on the dishabituation trials. Since the level of response was significantly greater on natural/unnatural sequences than on unnatural/natural sequences, we conclude that the chimpanzees were not responding just to novelty but rather to events that infringed their sense of natural causation. PMID:15322943

  2. Imitation of intentional manipulatory actions in chimpanzees (Pan troglodytes).

    PubMed

    Myowa-Yamakoshi, M; Matsuzawa, T

    2000-12-01

    In this study, the authors investigated the understanding of other's actions in 5 adult chimpanzees (Pan troglodytes). A human demonstrated an attempt to open different containers. Each container required a different motor pattern to open it. Along with the container, a 2nd object was made available. After a free play period in which the chimpanzees' natural behaviors toward the objects were recorded, the authors tested the following 2 phases: The demonstrator (a) tried but failed to open and (b) opened the container successfully, with 1 of 2 alternative strategies, either using an "irrelevant tool" or by hand. The chimpanzees did not reproduce the demonstrator's motor patterns precisely but did reproduce the demonstrated strategies in both phases. These results suggest that chimpanzees anticipate the intentions of others by perceiving the directionality and causality of object(s) as available cues. PMID:11149542

  3. Stellar Mass Radial Profiles of Pan-STARRS MDS Galaxies

    NASA Astrophysics Data System (ADS)

    Zheng, Zheng; Thilker, D. A.; Heckman, T. M.

    2013-01-01

    Six-band (ugrizy) surface brightness radial profiles are derived for a sample of 48 late-type face-on non-interacting nearby galaxies using the Pan-STARRS Medium Deep Survey stack imaging (grizy) and the CFHT deep u-band imaging data. The surface brightnesses are measured down to ~ 29-30 ABmag/arcsec^2. The SB radial profiles are then fed into the advanced SED fitting software MAGPHYS (da Cunha et al. 2008) to derive radial profiles of stellar mass surface density as well as other parameters, such as metallicity and star formation history. The output stellar mass surface density profiles can be classified into three types (single exponential, down-bending, and up-bending), which is consistent with the results of Polen & Trujillo (2006). But the up-bending profiles are more common than indicated in PT06.

  4. Spontaneous tempo and rhythmic entrainment in a bonobo (Pan paniscus).

    PubMed

    Large, Edward W; Gray, Patricia M

    2015-11-01

    The emergence of speech and music in the human species represent major evolutionary transitions that enabled the use of complex, temporally structured acoustic signals to coordinate social interaction. While the fundamental capacity for temporal coordination with complex acoustic signals has been shown in a few distantly related species, the extent to which nonhuman primates exhibit sensitivity to auditory rhythms remains controversial. In Experiment 1, we assessed spontaneous motor tempo and tempo matching in a bonobo (Pan paniscus), in the context of a social drumming interaction. In Experiment 2, the bonobo spontaneously entrained and synchronized her drum strikes within a range around her spontaneous motor tempo. Our results are consistent with the hypothesis that the evolution of acoustic communication builds upon fundamental neurodynamic mechanisms that can be found in a wide range of species, and are recruited for social interactions. PMID:26147705

  5. Fatal myocardial fibrosis in an aged chimpanzee (Pan troglodytes).

    PubMed

    Baldessari, Audrey; Snyder, Jessica; Ahrens, Joel; Murnane, Robert

    2013-01-01

    A 36-year-old male chimpanzee (Pan troglodytes) assigned to a life-long sign language communication project presented for sudden death. No other clinical or clinical pathological abnormalities were noted and given the signalment, death due to cardiac failure was suspected. Necropsy findings revealed moderate cardiomegaly and other chronic age-related findings including focal renal tubular cystic dilation and gingival hyperplasia. Histologic evaluation of the heart revealed interstitial fibrosing cardiomyopathy characterized by severe interstitial myocardial fibrosis replacing and separating myofibers within all chambers of the heart, especially the left ventricle, interventricular septum and subvalvular areas. This case report represents an additional case of sudden death associated with interstitial myocardial fibrosis in a chimpanzee. This process has been previously cited as the most common cause of sudden death in aged chimpanzees. PMID:23762500

  6. A review on harmful effects of pan masala.

    PubMed

    Garg, A; Chaturvedi, P; Mishra, A; Datta, S

    2015-01-01

    Pan masala (PM) is a mixture of areca nut with slaked lime, catechu and other flavoring agents. It is widely available and used by all the sections of the Indian society. It is genotoxic as it increases sister chromatin exchange and chromatin aberrations. Among humans, it is a leading cause of oral submucous fibrosis that often progresses to oral cancer. Among experimental animals, it leads to neoplastic lesions in lung, liver and stomach. It is hepatotoxic leading to increased level of enzymes, deranged carbohydrate and lipid metabolism. It is harmful to kidneys and testes leading to increased creatinine and sperm deformities respectively. PM is a very harmful substance affecting almost all organ systems, and there is immediate need for a national policy on complete ban on the production, storage, sale and marketing of PM. PMID:26960511

  7. Proton Ion Conducting Polymer Electrolyte Pan: NH4PF6

    NASA Astrophysics Data System (ADS)

    Sikkanthar, S.; Karthikeyan, S.; Rajeswari, N.; Selvasekarapandian, S.; Sanjeeviraja, C.

    2013-07-01

    Polymer electrolytes are an important class of materials and have been used in high energy batteries, fuel cells, gas sensors, display devices etc. PAN based polymer electrolyte films doped with ammonium hexafluorophosphate (NH4PF6) has been prepared by the solution casting method. The prepared films have been investigated by different techniques such as XRD, FTIR and AC Impedance spectroscopy. XRD studies reveal the amorphous nature of the polymer blend-salt complexes. The FTIR analysis confirms the complex formation of the polymer with salt. From the AC Impedance spectroscopy, the maximum proton conductivity at room temperature has been found to be 3.98×10-4 S cm-1 for 20 mol% salt doped electrolyte.

  8. Characterisation of Proton Conducting Polymer Electrolyte Based on Pan

    NASA Astrophysics Data System (ADS)

    Nithya, S.; Selvasekarapandian, S.; Rajeswari, N.; Sikkanthar, S.; Karthikeyan, S.; Sanjeeviraja, C.

    2013-07-01

    The polymer electrolytes composed of polyacrylonitrile (PAN) with various concentration of ammonium nitrare (NH4NO3) salt have been prepared by solution casting method, using DMF as solvent. The increase in amorphous nature of the polymer electrolytes has been confirmed by Xray diffraction analysis. The complex formation between polymer and dissociated salt has been confirmed by Fourier transform infrared spectroscopy. From the Ac impedance spectroscopic analysis, the ionic conductivity of 20 mol% NH4NO3 doped polymer complex has been found to be 2.742 × 10-6 S cm-1 at room temperature. The conductivity has been increased when the temperature is increased. The activation energy of 20 mol% NH4NO3 doped polymer electrolyte was calculated using Arrhenius plot and it has been found to be 0.58 eV. The dielectric permitivitty (ɛ*) and electric modulus (m*) have been discussed.

  9. Pan-arctic river fluxes of polychlorinated biphenyls.

    PubMed

    Carrizo, Daniel; Gustafsson, Örjan

    2011-10-01

    Observations of polychlorinated biphenyls (PCB) concentrations in fluvial surface sediments near the mouths of the six Great Arctic Rivers (GARs; Ob, Yenisey, Lena, Indigirka, Kolyma, and Mackenzie) were combined with annual dissolved organic carbon (DOC) and particulate organic carbon (POC) loadings and hydraulic discharge to estimate the pan-Arctic river flux of PCBs. The highest total-phase fluxes of ∑(13)PCB were found for the Ob River, with 184 kg/yr and the smallest for the Indigirka River with 3.9 kg/yr. Consistent with a continent-scale trend among the Eurasian GARs of increasing POC concentrations eastward, which is extending to the North American Mackenzie River, a general shift in the estimated PCB partitioning from dissolved to particle-associated flux was found toward the east. Pentachlorinated and hexachlorinated PCBs constituted the majority (>70%) of the total PCB fluxes in the Eurasian Rivers. In contrast, trichlorinated and tetrachlorinated congeners were the most abundant in the Mackenzie (≈ 75%). The total ∑(13)PCB fluxes from the pan-Arctic rivers are here estimated to be ∼0.4 tonne/yr. This is geochemically consistent with the inventory of total PCBs in the Polar Mixed Layer of the entire Arctic Ocean (0.39 tonne) and about a factor 2 less than two new estimates of the PCB settling export to Arctic subsurface waters. Hence, the yearly Great Arctic River PCB fluxes only represent 0.001% of the historical PCB emission into the global environment. To our knowledge, this is the first estimate of circum-Arctic river flux of any organic pollutant based on a comprehensive investigation of the pollutants in several rivers and it contributes toward a more complete understanding of large-scale contaminant cycling in the Arctic. PMID:21863827

  10. Ultraviolet Imaging Probe for the Pan-STARRS-1 Telescope

    NASA Astrophysics Data System (ADS)

    Hodapp, K.; Chambers, K.

    This paper describes the scientific rationale, the design, and the expected data products of the u-band Imaging Probe (UIP) for Pan-STARRS. The Pan-STARRS photometric survey itself will be conducted in the g, r, i, z, and y bands and cover the 3/4 of the sky accessible from Haleakala. In parallel to the survey conducted with the PS1 1.8m telescope, an Imaging Sky Probe (ISP, Granett et. al., these proceedings) will monitor the sky conditions, variations in transparency across the 3° field of view, provide a characterization of the astronomical diffuse sky brightness, and extend the dynamic range of PS1 stellar photometry to the brightest stars. The u-band Imaging Probe is an additional small wide-field camera to extend this bright star photometric survey to the shortest wavelengths accessible from ground-based observatories. It will thereby establish a well characterized photometric system at these wavelengths with a dense sample of stars covering 3/4 of the entire sky, including the galactic plane. The UIP will continuously make dedicated u-band measurements, and the large number of these independent measurements together with substantial overlapping fields of view and repeated visits to standard star fields as part of the PS1 mission, has the potential of substantially improving u-band calibration and photometry across the sky over all previous u-band imaging and catalog surveys. For specific future observations with larger telescopes, this system of stars will serve as secondary calibration stars to tie these deeper observations into the photometric system established in this way. The UIP is currently in the early design stages. The UIP will be operated as an extension of the PS1 Imaging Sky Probe (ISP), and the data will be processed through the same data reduction pipeline and be made available as part of the photometric survey.

  11. Ontogenetic study of allometric variation in Homo and Pan mandibles.

    PubMed

    Singh, Nandini

    2014-02-01

    Investigating ontogenetic variation and allometry in the mandible can provide valuable insight and aid in addressing questions related to the ontogeny of the skull. Here, patterns of ontogenetic shape change and allometric trajectories were examined in the mandible of 187 sub-adult and adult humans, bonobos, and chimpanzees. Procrustes-based geometric morphometrics was employed to quantify and analyze mandibular form. Thirty three-dimensional landmarks were used to capture the overall morphology of the mandible, and the landmarks were analyzed as a whole and subdivided into separate anterior and posterior units. Principal component analyses in Procrustes shape-space and form-space, and multivariate regressions were used to examine patterns of ontogenetic and allometric shape change. Results suggest that humans are distinct from Pan both in their mandibular morphology, particularly in the anterior-alveolar region, and direction of allometric trajectory. Chimpanzees and bonobos have parallel ontogenetic trajectories, but also show differences in mandibular shape. Species-specific features and adult mandibular shape are established before or by the eruption of the deciduous dentition. This suggests that developmental processes prior to deciduous teeth eruption have a stronger effect establishing taxa-specific phenotypes than later postnatal effects. This additionally implies that divergent trajectories between Pan and Homo do not contribute much to the adult mandibular shape after deciduous teeth eruption. Separate analyses of the anterior-alveolar region and ascending ramus show that these regions are semi-independent in their developmental pattern of shape change and allometry. This implies that allometric variation and ontogenetic shape change in the hominoid mandible is decoupled. PMID:24347386

  12. Measurements of peroxyacetyl nitrate (PAN) and NO2 at the South Pacific Ocean

    NASA Astrophysics Data System (ADS)

    Yeon, J.; Song, D.; Lee, J. S.; Rhee, T. S.; Park, K.; Lee, G.

    2014-12-01

    We measured peroxyacetyl nitrate (PAN) and NO2 in remote marine boundary area during the SHIPPO (Shipborne Pole to Pole Observation). The measurements were made on the R/V Araon from Christ church, New Zealand to Gwangyang, South Korea along the western Pacific Ocean from March 30th to April 25th, 2014. Both PAN and NO2 were analyzed every 2 minute by a fast chromatograph with luminol-based chemiluminescence detection. In order to improve their detection limits, random noise from PMT has been successfully reduced by ensembled chromatograms with every 30 samples. Additionally, we replaced Nylon membrane surface with reflective aluminum surface and applied the new Luminol solution, which enhanced the signals significantly with detection limits of 6 pptv and 40 ppbv for PAN and NO2, respectively. Average concentrations of PAN and NO2 were 8 pptv for PAN and 80 pptv for NO2 during the experiment. The back trajectory analysis showed that the directly influenced air masses from anthropogenic activities were rare except the latitudes higher than 20°N. Relatively good correlations between PAN and NO2 were consistently observed, while PAN and O3 were not clearly correlated except in the air masses recently originated from land masses.

  13. Groundwater evaporation from salt pans: Examples from the eastern Arabian Peninsula

    NASA Astrophysics Data System (ADS)

    Schulz, Stephan; Horovitz, Marcel; Rausch, Randolf; Michelsen, Nils; Mallast, Ulf; Köhne, Maximilian; Siebert, Christian; Schüth, Christoph; Al-Saud, Mohammed; Merz, Ralf

    2015-12-01

    The major groundwater resources of the Arabian Peninsula are stored in the large sedimentary basins in its eastern part. Evaporation from continental salt pans (playas) is an important process in water resources assessments of its upper principal aquifers - the Upper Mega Aquifer system - as it constitutes a significant sink. However, literature values on evaporation rates vary widely and usually report about coastal salt pans where seawater evaporation is assumed. The present study applies different methods to provide a comprehensive picture of groundwater evaporation from salt pans of the Upper Mega Aquifer system. A remote sensing approach provided the spatial distribution and total salt pan area of about 36,500 km2. Hydrochemical and isotopic investigations revealed that from about 10% (3600 km2 ± 1600 km2) of the mapped salt pan area seawater evaporates. To estimate the groundwater evaporation rate from continental salt pans a laboratory column experiment was set up, implying a mean annual evaporation rate of about 42 mm ± 13 mm. In-situ analysis of water table fluctuations in the field suggested about 3 mm a-1 originate from recently infiltrated rainwater leading to an annual net groundwater evaporation of 39 mm ± 13 mm. Relating this number to the mapped salt pan area, from which groundwater evaporates, provides a total annual groundwater loss of 1.3 km3 ± 0.5 km3 for the Upper Mega Aquifer system.

  14. Synthesis and characterization of multiwalled CNT-PAN based composite carbon nanofibers via electrospinning.

    PubMed

    Kaur, Narinder; Kumar, Vipin; Dhakate, Sanjay R

    2016-01-01

    Electrospun fibrous membranes find place in diverse applications like sensors, filters, fuel cell membranes, scaffolds for tissue engineering, organic electronics etc. The objectives of present work are to electrospun polyacrylonitrile (PAN) nanofibers and PAN-CNT nanocomposite nanofibers and convert into carbon nanofiber and carbon-CNT composite nanofiber. The work was divided into two parts, development of nanofibers and composite nanofiber. The PAN nanofibers were produced from 9 wt% PAN solution by electrospinning technique. In another case PAN-CNT composite nanofibers were developed from different concentrations of MWCNTs (1-3 wt%) in 9 wt% PAN solution by electrospinning. Both types of nanofibers were undergone through oxidation, stabilization, carbonization and graphitization. At each stage of processing of carbon and carbon-CNT composite nanofibers were characterized by SEM, AFM, TGA and XRD. It was observed that diameter of nanofiber varies with processing parameters such as applied voltage tip to collector distance, flow rate of solution and polymer concentrations etc. while in case of PAN-CNT composite nanofiber diameter decreases with increasing concentration of CNT in PAN solution. Also with stabilization, carbonization and graphitization diameter of nanofiber decreases. SEM images shows that the minimum fiber diameter in case of 3 wt% of CNT solution because as viscosity increases it reduces the phase separation of PAN and solvent and as a consequence increases in the fiber diameter. AFM images shows that surface of film is irregular which give idea about mat type orientation of fibers. XRD results show that degree of graphitization increases on increasing CNT concentration because of additional stresses exerting on the nanofiber surface in the immediate vicinity of CNTs. TGA results shows wt loss decreases as CNT concentration increases in fibers. PMID:27217998

  15. PD2P: PanDA Dynamic Data Placement for ATLAS

    NASA Astrophysics Data System (ADS)

    Maeno, T.; De, K.; Panitkin, S.

    2012-12-01

    The PanDA (Production and Distributed Analysis) system plays a key role in the ATLAS distributed computing infrastructure. PanDA is the ATLAS workload management system for processing all Monte-Carlo (MC) simulation and data reprocessing jobs in addition to user and group analysis jobs. The PanDA Dynamic Data Placement (PD2P) system has been developed to cope with difficulties of data placement for ATLAS. We will describe the design of the new system, its performance during the past year of data taking, dramatic improvements it has brought about in the efficient use of storage and processing resources, and plans for the future.

  16. The Structure of the PanD/PanZ Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A

    PubMed Central

    Monteiro, Diana C.F.; Patel, Vijay; Bartlett, Christopher P.; Nozaki, Shingo; Grant, Thomas D.; Gowdy, James A.; Thompson, Gary S.; Kalverda, Arnout P.; Snell, Edward H.; Niki, Hironori; Pearson, Arwen R.; Webb, Michael E.

    2015-01-01

    Summary Coenzyme A (CoA) is an ubiquitous and essential cofactor, synthesized from the precursor pantothenate. Vitamin biosynthetic pathways are normally tightly regulated, including the pathway from pantothenate to CoA. However, no regulation of pantothenate biosynthesis has been identified. We have recently described an additional component in the pantothenate biosynthetic pathway, PanZ, which promotes the activation of the zymogen, PanD, to form aspartate α-decarboxylase (ADC) in a CoA-dependent manner. Here we report the structure of PanZ in complex with PanD, which reveals the structural basis for the CoA dependence of this interaction and activation. In addition, we show that PanZ acts as a CoA-dependent inhibitor of ADC catalysis. This inhibitory effect can effectively regulate the biosynthetic pathway to pantothenate, and thereby also regulate CoA biosynthesis. This represents a previously unobserved mode of metabolic regulation whereby a cofactor-utilizing protein negatively regulates the biosynthesis of the same cofactor. PMID:25910242

  17. The structure of the PanD/PanZ protein complex reveals negative feedback regulation of pantothenate biosynthesis by coenzyme A.

    PubMed

    Monteiro, Diana C F; Patel, Vijay; Bartlett, Christopher P; Nozaki, Shingo; Grant, Thomas D; Gowdy, James A; Thompson, Gary S; Kalverda, Arnout P; Snell, Edward H; Niki, Hironori; Pearson, Arwen R; Webb, Michael E

    2015-04-23

    Coenzyme A (CoA) is an ubiquitous and essential cofactor, synthesized from the precursor pantothenate. Vitamin biosynthetic pathways are normally tightly regulated, including the pathway from pantothenate to CoA. However, no regulation of pantothenate biosynthesis has been identified. We have recently described an additional component in the pantothenate biosynthetic pathway, PanZ, which promotes the activation of the zymogen, PanD, to form aspartate α-decarboxylase (ADC) in a CoA-dependent manner. Here we report the structure of PanZ in complex with PanD, which reveals the structural basis for the CoA dependence of this interaction and activation. In addition, we show that PanZ acts as a CoA-dependent inhibitor of ADC catalysis. This inhibitory effect can effectively regulate the biosynthetic pathway to pantothenate, and thereby also regulate CoA biosynthesis. This represents a previously unobserved mode of metabolic regulation whereby a cofactor-utilizing protein negatively regulates the biosynthesis of the same cofactor. PMID:25910242

  18. The PanK2 Genes of Mouse and Human Specify Proteins with DistinctSubcellular Locations

    SciTech Connect

    Leonardi, Roberta; Zhang, Yong-Mei; Lydikis, Athanasios; Stevens,Robert D.; Ilkayeva, Olga R.; Wenner, Brett R.; Bain, James R.; Newgard,Christopher B.; Rock, Charles O.; Jackowski, Suzanne

    2007-05-01

    Coenzyme A (CoA) biosynthesis is initiated by pantothenatekinase (PanK) and CoA levels are controlled through differentialexpression and feedback regulation of PanK isoforms. PanK2 is amitochondrial protein in humans, but comparative genomics revealed thatacquisition of a mitochondrial targeting signal was limited to primates.Human and mouse PanK2 possessed similar biochemical properties, withinhibition by acetylCoA and activation by palmitoylcarnitine. Mouse PanK2localized in the cytosol, and the expression of PanK2 was higher in humanbrain compared to mouse brain. Differences in expression and subcellularlocalization should be considered in developing a mouse model for humanPanK2 deficiency. (c) 2007 Federation of European Biochemical Societies.Published by Elsevier B.V.

  19. Ensemble seasonal hydrological forecasting at the pan-European scale

    NASA Astrophysics Data System (ADS)

    Pechlivanidis, Ilias; Spångmyr, Henrik; Bosshard, Thomas; Gustafsson, David; Olsson, Jonas

    2015-04-01

    Recent advances in understanding and forecasting of climate and climate change have resulted into skillful and useful meteorological predictions, which can consequently increase the confidence of hydrological prognosis and awareness from an end-user perspective. However, the majority of seasonal impact modelling has commonly been conducted at only one or a limited number of basins limiting the need to understand large systems which are heavily influenced by human activities. In here, we complement the "deep" knowledge from basin based modelling using large scale multi-basin modelling, which is capable of representing human influences (i.e. irrigation, reservoirs and groundwater use). We analyse the seasonal predictive skill along Europe's hydro-climatic gradient using the pan-European E-HYPE v3.0 multi-basin hydrological model. Forcing data (mean daily precipitation and temperature) are derived from the WFDEI product for the period 1979-2010 and used to initialise the hydrological model (level in surface water, i.e. reservoirs, lakes and wetlands, soil moisture, snow depth). Re-forecast forcing data (daily mean precipitation and temperature for the period 1981-2010) from ECMWF's System 4 (15 members initialised every month) are firstly bias corrected using a modified version of the Distribution Based Scaling (DBS) method to account for drifting conditioning the bias correction on the lead month, and further used to drive E-HYPE. The predictive skill of river runoff for a number of European basins is assessed on seasonal timescales. Seasonal re-forecasts are evaluated with respect to their accuracy against observed impact variables, i.e. streamflow, at different space and time-scales; the value of the predictions are assessed using various performance metrics. Verification points (around 2600 stations) are used to represent various climatologies, soil-types, land uses, altitudes and basin scales within Europe. We finally identify regions of similar hydrological

  20. Pan American Airways/Naval Air Transport Service/destroyer base site showing brick ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Pan American Airways/Naval Air Transport Service/destroyer base site showing brick and concrete paving of patio, and circular planters. View facing east. - U.S. Naval Base, Pearl Harbor, Pearl City Peninsula, Pearl City, Honolulu County, HI

  1. Pair of bollards and remnant seawall of Pan American Airways/Naval ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Pair of bollards and remnant seawall of Pan American Airways/Naval Air Transport Service/destroyer base site. View facing north. - U.S. Naval Base, Pearl Harbor, Pearl City Peninsula, Pearl City, Honolulu County, HI

  2. Pan American Airways/Naval Air Transport Service/destroyer base site showing stone ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Pan American Airways/Naval Air Transport Service/destroyer base site showing stone wall around patio. View facing east-southeast. - U.S. Naval Base, Pearl Harbor, Pearl City Peninsula, Pearl City, Honolulu County, HI

  3. Gravity and solidity in four great ape species (Gorilla gorilla, Pongo pygmaeus, Pan troglodytes, Pan paniscus): vertical and horizontal variations of the table task.

    PubMed

    Cacchione, Trix; Call, Josep; Zingg, Robert

    2009-05-01

    Three experiments modeled after infant studies were run on four great ape species (Gorilla gorilla, Pongo pygmaeus, Pan troglodytes, Pan paniscus) to investigate their reasoning about solidity and gravity constraints. The aims were: (a) to find out if great apes are subject to gravity biased search or display sensitivity for object solidity, (b) to check for species differences, and (c) to assess if a gravity hypothesis or more parsimonious explanations best account for failures observed. Results indicate that great apes, unlike monkeys, show no reliable gravity bias, that ape species slightly differ in terms of their performance, and that the errors made are best explained by a gravity account. PMID:19450024

  4. Evaluation of pan masala for toxic effects on liver and other organs.

    PubMed

    Sarma, A B; Chakrabarti, J; Chakrabarti, A; Banerjee, T S; Roy, D; Mukherjee, D; Mukherjee, A

    1992-02-01

    The acute and chronic oral toxicity of pan masala (betel quid without betel leaf) was assessed in gavage studies in rats. Clinical parameters (liver and serum glutamic-oxaloacetic transaminase, glutamic-pyruvic transaminase and alkaline phosphatase) and organ weights were measured. The results indicate that chronic feeding of pan masala impaired liver function, as indicated by changes in enzyme activity, and decreased relative weights of the gonads and brain. PMID:1555797

  5. Alpine turf exfoliation pans in Lesotho, southern Africa: Climate-process-morphological linkages

    NASA Astrophysics Data System (ADS)

    Grab, Stefan W.

    2010-01-01

    Although alpine pans have been reported from a variety of mountain regions, these have received limited research attention and are thus amongst the least known of 'closed basins'. This study investigates macro- and fine-scale morphological attributes and the process dynamics of alpine turf exfoliation pans in the high Drakensberg of Lesotho, southern Africa. Climate data (temperature, precipitation and wind) are used to better ascertain climate-surface process linkages and how these may be associated with the observed morphological phenomena. Thirty pans were assessed for both macro- and fine-scale aspect-controlled morphological attributes. During 2005, Tinytag™ temperature loggers recorded ground temperatures on various pan riser aspects to establish the potential for cryogenic activity. Similarly, wind speed and direction data from 2001 were used to identify the potential role of wind as an erosion and transportation mechanism. The number and total weight of detached turf clumps accumulated at the base of various pan riser aspects were determined in July 1999, September 2001 and September 2004. It is suggested that the pans originated through initial turf disruption by animal trampling and turf burning, followed by the cryogenic up-heave of sediments. The pans typically elongate towards the southeast as they enlarge, demonstrate most active erosion on eastern and southeastern riser aspects, and host seasonal micro-echo and micro-climbing dunes along such riser aspects. It is concluded that an annual cyclic (seasonal) pattern of contemporary climate-driven geomorphic processes, dominated by strong northwesterly winds, control the fine-scale morphological evolution of alpine turf exfoliation pans in the Lesotho highlands.

  6. Neocortical synaptophysin asymmetry and behavioral lateralization in chimpanzees (Pan troglodytes)

    PubMed Central

    Sherwood, Chet C.; Duka, Tetyana; Stimpson, Cheryl D.; Schenker, Natalie M.; Garrison, Amy R.; Schapiro, Steven J.; Baze, Wallace B.; McArthur, Mark J.; Erwin, Joseph M.; Hof, Patrick R.; Hopkins, William D.

    2015-01-01

    Although behavioral lateralization is known to correlate with certain aspects of brain asymmetry in primates, there are limited data concerning hemispheric biases in the microstructure of the neocortex. In the present study, we investigated whether there is asymmetry in synaptophysin-immunoreactive puncta density and protein expression levels in the region of hand representation of the primary motor cortex in chimpanzees (Pan troglodytes). Synaptophysin is a presynaptic vesicle-associated protein found in nearly all synapses of the central nervous system. We also tested whether there is a relationship between hand preference on a coordinated bimanual task and the interhemispheric distribution of synaptophysin as measured by both stereologic counts of immunoreactive puncta and by Western blotting. Our results demonstrated that synaptophysin-immunoreactive puncta density is not asymmetric at the population level, whereas synaptophysin protein expression levels are significantly higher in the right hemisphere. Handedness was correlated with interindividual variation in synaptophysin-immunoreactive puncta density. As a group, left-handed and ambidextrous chimpanzees showed a rightward bias in puncta density. In contrast, puncta densities were symmetrical in right-handed chimpanzees. These findings support the conclusion that synapse asymmetry is modulated by lateralization of skilled motor behavior in chimpanzees. PMID:20384782

  7. Modeling Pan Evaporation for Kuwait by Multiple Linear Regression

    PubMed Central

    Almedeij, Jaber

    2012-01-01

    Evaporation is an important parameter for many projects related to hydrology and water resources systems. This paper constitutes the first study conducted in Kuwait to obtain empirical relations for the estimation of daily and monthly pan evaporation as functions of available meteorological data of temperature, relative humidity, and wind speed. The data used here for the modeling are daily measurements of substantial continuity coverage, within a period of 17 years between January 1993 and December 2009, which can be considered representative of the desert climate of the urban zone of the country. Multiple linear regression technique is used with a procedure of variable selection for fitting the best model forms. The correlations of evaporation with temperature and relative humidity are also transformed in order to linearize the existing curvilinear patterns of the data by using power and exponential functions, respectively. The evaporation models suggested with the best variable combinations were shown to produce results that are in a reasonable agreement with observation values. PMID:23226984

  8. Placentophagy in wild chimpanzees (Pan troglodytes verus) at Bossou, Guinea.

    PubMed

    Fujisawa, Michiko; Hockings, Kimberley J; Soumah, Aly Gaspard; Matsuzawa, Tetsuro

    2016-04-01

    Despite intensive observation of nonhuman great apes during long-term field studies, observations of great ape births in the wild are rare. Research on wild chimpanzees (Pan troglodytes verus) at Bossou in the Republic of Guinea has been ongoing for 35 years, yet chimpanzee parturitions have been observed on only two occasions. Here we provide information regarding both chimpanzee births, with detailed information from the close observation of one. During this birth, the mother built a day nest in a tree before parturition. After giving birth, the mother consumed the placenta, and the other chimpanzees in her party gathered near her and her neonate. However, she did not share the placenta, and consumed it all herself. In the second observation, the mother also built a nest in a tree and subsequently gave birth. Thereafter, she shared the placenta with some individuals and consumed part of the placenta herself. Although maternal placentophagy is a ubiquitous behavior among the majority of non-human primates, observations of placenta sharing by wild primates are infrequent, and the proximate and ultimate explanations for the behavior remain unclear. PMID:26769192

  9. Pan Genome of the Phytoplankton Emiliania Underpins its Global Distribution

    SciTech Connect

    Read, Betsy A.; Kegel, Jessica; Klute, Mary J.; Kuo, Alan; Lefebvre, Stephane C.; Maumus, Florian; Mayer, Christoph; Miller, John; Monier, Adam; Salamov, Asaf; Young, Jeremy; Aguilar, Maria; Claverie, Jean-Michel; Frickenhaus, Stephan; Gonzalez, Karina; Herman, Emily K.; Lin, Yao-Cheng; Napier, Johnathan; Ogata, Hiroyuki; Sarno, Analissa F.; Schmutz, Jeremy; Schroeder, Declan; de Vargas, Columban; Verret, Frederic; von Dassow, Peter; Valentin, Klaus; Van de Peer, Yves; Wheeler, Glen; Annotation Consortium, Emiliania huxleyi; Dacks, Joel B.; Delwiche, Charles F.; Dyhrman, Sonya T.; Glockner, Gernot; John, Uwe; Richards, Thomas; Worden, Alexandra Z.; Zhang, Xiaoyu; Grigoriev, Igor V.

    2012-06-18

    Coccolithophores have influenced the global climate for over 200 million years1. These marine phytoplankton can account for 20 per cent of total carbon fixation in some systems2. They form blooms that can occupy hundreds of thousands of square kilometres and are distinguished by their elegantly sculpted calcium carbonate exoskeletons (coccoliths), rendering themvisible fromspace3.Although coccolithophores export carbon in the form of organic matter and calcite to the sea floor, they also release CO2 in the calcification process. Hence, they have a complex influence on the carbon cycle, driving either CO2 production or uptake, sequestration and export to the deep ocean4. Here we report the first haptophyte reference genome, from the coccolithophore Emiliania huxleyi strain CCMP1516, and sequences from 13 additional isolates. Our analyses reveal a pan genome (core genes plus genes distributed variably between strains) probably supported by an atypical complement of repetitive sequence in the genome. Comparisons across strains demonstrate thatE. huxleyi, which has long been considered a single species, harbours extensive genome variability reflected in different metabolic repertoires. Genome variability within this species complex seems to underpin its capacity both to thrive in habitats ranging from the equator to the subarctic and to form large-scale episodic blooms under a wide variety of environmental conditions.

  10. Pan-neuronal imaging in roaming Caenorhabditis elegans.

    PubMed

    Venkatachalam, Vivek; Ji, Ni; Wang, Xian; Clark, Christopher; Mitchell, James Kameron; Klein, Mason; Tabone, Christopher J; Florman, Jeremy; Ji, Hongfei; Greenwood, Joel; Chisholm, Andrew D; Srinivasan, Jagan; Alkema, Mark; Zhen, Mei; Samuel, Aravinthan D T

    2016-02-23

    We present an imaging system for pan-neuronal recording in crawling Caenorhabditis elegans. A spinning disk confocal microscope, modified for automated tracking of the C. elegans head ganglia, simultaneously records the activity and position of ∼80 neurons that coexpress cytoplasmic calcium indicator GCaMP6s and nuclear localized red fluorescent protein at 10 volumes per second. We developed a behavioral analysis algorithm that maps the movements of the head ganglia to the animal's posture and locomotion. Image registration and analysis software automatically assigns an index to each nucleus and calculates the corresponding calcium signal. Neurons with highly stereotyped positions can be associated with unique indexes and subsequently identified using an atlas of the worm nervous system. To test our system, we analyzed the brainwide activity patterns of moving worms subjected to thermosensory inputs. We demonstrate that our setup is able to uncover representations of sensory input and motor output of individual neurons from brainwide dynamics. Our imaging setup and analysis pipeline should facilitate mapping circuits for sensory to motor transformation in transparent behaving animals such as C. elegans and Drosophila larva. PMID:26711989

  11. Assessing future changes in pan-European environmental flows

    NASA Astrophysics Data System (ADS)

    Laize, C.; Hannah, D. M.

    2011-12-01

    The potential river flow-driven impact of change on aquatic and riparian ecosystems at the pan-European scale under various climatological and development scenarios was assessed using a methodology based conceptually on the Range of Variability Approach (RVA) using the Indicators of Hydrological Alteration (IHA): a desk-top technique for assessing if environmental flow requirements. This paper presents an adaptation of the IHA approach using monthly flows. European and Mediterranean river networks were modelled as ~35,000 cells (0.5° longitude x 0.5° latitude). For each cell, modelled monthly flows were generated for an ensemble of 10 future climate change scenarios. These scenarios consist of combinations of two climate scenarios (IPCM4 and MIMR) and four socio-economic water-use scenarios (each with a main driver of economy, policy, security, or sustainability), projected for 2050s. IHA-styled statistics were calculated. By tailoring the RVA, acceptable baseline environmental flow ranges and departures from these of the projected hydrological regimes were assessed and coded using a traffic-light system (green for environmental flows met, amber minor variation, red major variation). For the first time, the results show spatial patterns of flow change and associated potential river ecosystem impacts across the wider European continent. Importantly, the findings indicate that climate change may be a more influential driver than water-use change in determining future river ecosystem health . Patterns were also investigated against broad basin types to identify which are most or least at risk.

  12. Permanent tooth calcification in chimpanzees (Pan troglodytes): patterns and polymorphisms.

    PubMed

    Kuykendall, K L; Conroy, G C

    1996-01-01

    Tooth calcification is an important developmental marker for use in constructing models for early hominid life history, particularly for its application to the fossil record. As chimpanzees are commonly utilized in interspecific comparisons in such research, this study aims to improve available baseline data for tooth calcification patterns in chimpanzees (Pan troglodytes), and to quantify basic patterns and polymorphisms. We present an analysis of developmental patterns for the left mandibular dentition (I1-M3) based on intraoral radiographs obtained from a cross-sectional sample of chimpanzees (58 males, 60 females) housed at LEMSIP (NYU Medical Center) and Yerkes (Emory University). No significant differences with previous descriptions of the basic sequences of tooth calcification in chimpanzees were found, but variation in such patterns was documented for the first time. In the overall sequence, polymorphisms between the canine and the group (M2 P4 P3) reached significant levels. This is due to the relative delay in canine crown formation compared to other teeth. Differences in the basic sequence between males and females were recorded, but are due to minor shifts in the percentages of occurrence for polymorphic sequences which are common to both genders. Perhaps our most important findings are that a) different polymorphic sequences occur in tooth calcification and tooth emergence in chimpanzees, and b) developmental relationships among teeth fluctuate throughout tooth calcification. Thus, characterizations of dental developmental patterns based on particular stages of development cannot necessarily be extrapolated to other stages without supporting data. PMID:8928717

  13. Pan-STARRS1: Status, Science, and Public Data Release

    NASA Astrophysics Data System (ADS)

    Chambers, Kenneth C.

    2013-01-01

    PS1, the Pan-STARRS1 Telescope is entering its third year of operations. Operations of the PS1 System include the Observatory, Telescope, 1.4 Gigapixel Camera, Image Processing Pipeline , PSPS relational database and reduced science product software servers. The PS1 Surveys include: (1) A 3pi Steradian Survey, (2) A Medium Deep survey of 10 PS1 footprints spaced around the sky; (3) A solar system survey optimized for Near Earth Objects, (4) a Stellar Transit Survey; and (5) a Deep Survey of M31. The PS1 3pi Survey has now covered most of the sky north of dec=-30 with 8 to 10 visits in five bands: g,r,i,z and y or over ~45 epochs per point on sky. The performance of the PS1 system, sky coverage, cadence, and data quality of the surveys will be presented as well as progress in reprocessing of the data taken to date and plans for serving the data to the public. A summary of science highlights will be included. The PS1 Science Consortium consists of The Institute for Astronomy at the University of Hawai'i in Manoa, the Max Planck Institute for Astronomy, Heidelberg and the Max Planck Institute for Extraterrestrial Physics, Garching, The Johns Hopkins University, the University of Durham, the University of Edinburgh, the Queen's University Belfast, the Harvard-Smithsonian Center for Astrophysics, the Los Cumbres Observatory Global Telescope Network Incorporated, and the National Central University of Taiwan, NASA, and NSF.

  14. Constructive and deconstructive tool modification by chimpanzees (Pan troglodytes).

    PubMed

    Bania, Amanda E; Harris, Stephany; Kinsley, Hannah R; Boysen, Sarah T

    2009-01-01

    Nine chimpanzees (Pan troglodytes) were tested for their ability to assemble or disassemble the appropriate tool to obtain a food reward from two different apparatus. In its deconstructed form, the tool functioned as a probe for one apparatus. In its constructed form, the tool functioned as a hook, appropriate for a second apparatus. Each subject completed four test trials with each apparatus type. Tool types were randomized and counter-balanced between the two forms. Results demonstrated that adult and juvenile chimpanzees (N = 7) were successful with both tool types, while two infant chimpanzees performed near chance. Off-line video analyses revealed that tool modifications followed by attempted solutions by the adults and juveniles were typically correct on the first attempt. Neither infant was successful in modifying tools correctly on the first attempt over all eight trials. The older chimpanzees' ability to modify the appropriate tool consistently prior to use indicates an immediate recognition of the functional attributes necessary for the successful use of tool types on each apparatus, and represents a non-replication of a previously reported study by Povinelli. PMID:18654806

  15. Can chimpanzees (Pan troglodytes) discriminate appearance from reality?

    PubMed

    Krachun, Carla; Call, Josep; Tomasello, Michael

    2009-09-01

    A milestone in human development is coming to recognize that how something looks is not necessarily how it is. We tested appearance-reality understanding in chimpanzees (Pan troglodytes) with a task requiring them to choose between a small grape and a big grape. The apparent relative size of the grapes was reversed using magnifying and minimizing lenses so that the truly bigger grape appeared to be the smaller one. Our Lens test involved a basic component adapted from standard procedures for children, as well as several components designed to rule out alternative explanations. There were large individual differences in performance, with some chimpanzees' responses suggesting they appreciated the appearance-reality distinction. In contrast, all chimpanzees failed a Reverse Contingency control test, indicating that those who passed the Lens test did not do so by learning a simple reverse contingency rule. Four-year-old children given an adapted version of the Lens test failed it while 4.5-year-olds passed. Our study constitutes the first direct investigation of appearance-reality understanding in chimpanzees and the first cross-species comparison of this capacity. PMID:19631933

  16. The educational approach within Colombia's nutrition plan (PAN)

    NASA Astrophysics Data System (ADS)

    de Pizano, Julia Mejia

    1980-03-01

    With the knowledge that malnutrition affects the quality of life of an individual, the Colombian Government set up in 1976 a unique multi-sectorial plan (PAN), to combat the country's serious malnutrition. Government agencies and private industries in the sectors of production, distribution, health, sanitation, and education have coordinated their previously independent efforts. Among the interesting aspects are the coordination of sectors through work at various levels and through control of the budget, the limitation of bureaucracy, and the decentralization of decision-making. The ongoing attempts to overcome the difficulties encountered include making decisions in the face of inconclusive knowledge on what constitutes a well-balanced diet; combating the lack of knowledge of professionals about the environment of the poorest percentage of the population; and revising the traditional teaching method to make it more successful through a multi-media approach to assure wider coverage and more impact for the least cost, using materials such as games, puppets, posters and radio.

  17. Metabolomics dataset of PPAR-pan treated rat liver.

    PubMed

    Ament, Zsuzsanna; West, James A; Stanley, Elizabeth; Li, Xuefei; Ashmore, Tom; Roberts, Lee D; Wright, Jayne; Nicholls, Andrew W; Griffin, Julian L

    2016-09-01

    This article contains mass spectrometry (MS) data investigating small molecule changes as an effect of a triple peroxisome proliferator-activated receptor (PPAR-pan) agonist GW625019 in the liver as described in the manuscript (Ament et al., 2016) [1]. Samples were measured using gas chromatography-mass spectrometry (GC-MS) for total fatty acid content, and liquid chromatography-mass spectrometry (LC-MS) to measure intact lipids, carnitines and selected aqueous metabolites and eicosanoids. Data files comprise of Excel (Microsoft, WA, USA) spreadsheets of identified metabolites and their area ratio values for total fatty acids, carnitines, aqueous metabolites, and eicosanoids where the intensity of the analytes were normalised to the intensity of the internal standard. In the case of open profiling intact lipid data, the Excel file contains area ratio values of retention time and mass to charge ratio pairs; again, the area ratio values were calculated by normalising to the intensity of the internal standard. It should be noted that several metabolic changes are potentially indirect (secondary, tertiary and ensuing changes). PMID:27331087

  18. Bonobos (Pan paniscus) vocally protest against violations of social expectations.

    PubMed

    Clay, Zanna; Ravaux, Lucie; de Waal, Frans B M; Zuberbühler, Klaus

    2016-02-01

    Research has shown that great apes possess certain expectations about social regularities and both perceive and act according to social rules within their group. During natural and experimentally induced contexts, such as the inequitable distribution of resources, individuals also show protesting behaviors when their expectations about a social situation are violated. Despite broad interest in this topic, systematic research examining the nature of these expectations and the communicative signals individuals use to express them remains scant. Here, we addressed this by exploring whether bonobos (Pan paniscus) respond to violations of social expectations in naturally occurring social interactions, focusing on the vocal behavior of victims following socially expected and unexpected aggression. Expected aggression included conflicts over a contested resource and conflicts that were provoked by the victim. Unexpected aggression was any spontaneous, unprovoked hostility toward the victim. For each conflict, we also determined its severity and the composition of the nearby audience. We found that the acoustic and temporal structure of victim screams was individually distinct and varied significantly depending on whether or not aggression could be socially predicted. Certain acoustic parameters also varied as a function of conflict severity, but unlike social expectation, conflict severity did not discriminate scream acoustic structure overall. We found no effect of audience composition. We concluded that, beyond the physical nature of a conflict, bonobos possess certain social expectations about how they should be treated and will publicly protest with acoustically distinctive vocal signals if these expectations are violated. PMID:26881943

  19. Becoming a peter pan: omnipotence, dependency and the Ferenczian child.

    PubMed

    Bar-Haim, Shaul

    2015-03-01

    The aim of this paper is to provide a short history of the changes in Ferenczi's concept of early childhood, during the two decade period, 1913-1932. Initially, Ferenczi mainly emphasized children's feelings of omnipotence, which enable them to perceive themselves as strong, independent and capable human beings. By the mid-1920s, however, he felt that his earlier work did not give a good account of what comes after the stage of omnipotence, and that it did not adequately describe the difficulties in the transition from pleasure to reality principles. However, in his Clinical Diary, Ferenczi became fully aware of how fragile and insecure children are, and therefore how dangerous-yet necessary-it is for them to abandon the "stage of omnipotence" and to gain a "sense of reality". For Ferenczi, traumatized children are children who had not been loved in their early childhood, and therefore could not develop the capacity to make the journey from pleasure principle to that of reality. It will be suggested that a paradigmatic example for this kind of child is Peter Pan. PMID:25720781

  20. Pan genome of the phytoplankton Emiliania underpins its global distribution.

    PubMed

    Read, Betsy A; Kegel, Jessica; Klute, Mary J; Kuo, Alan; Lefebvre, Stephane C; Maumus, Florian; Mayer, Christoph; Miller, John; Monier, Adam; Salamov, Asaf; Young, Jeremy; Aguilar, Maria; Claverie, Jean-Michel; Frickenhaus, Stephan; Gonzalez, Karina; Herman, Emily K; Lin, Yao-Cheng; Napier, Johnathan; Ogata, Hiroyuki; Sarno, Analissa F; Shmutz, Jeremy; Schroeder, Declan; de Vargas, Colomban; Verret, Frederic; von Dassow, Peter; Valentin, Klaus; Van de Peer, Yves; Wheeler, Glen; Dacks, Joel B; Delwiche, Charles F; Dyhrman, Sonya T; Glöckner, Gernot; John, Uwe; Richards, Thomas; Worden, Alexandra Z; Zhang, Xiaoyu; Grigoriev, Igor V

    2013-07-11

    Coccolithophores have influenced the global climate for over 200 million years. These marine phytoplankton can account for 20 per cent of total carbon fixation in some systems. They form blooms that can occupy hundreds of thousands of square kilometres and are distinguished by their elegantly sculpted calcium carbonate exoskeletons (coccoliths), rendering them visible from space. Although coccolithophores export carbon in the form of organic matter and calcite to the sea floor, they also release CO2 in the calcification process. Hence, they have a complex influence on the carbon cycle, driving either CO2 production or uptake, sequestration and export to the deep ocean. Here we report the first haptophyte reference genome, from the coccolithophore Emiliania huxleyi strain CCMP1516, and sequences from 13 additional isolates. Our analyses reveal a pan genome (core genes plus genes distributed variably between strains) probably supported by an atypical complement of repetitive sequence in the genome. Comparisons across strains demonstrate that E. huxleyi, which has long been considered a single species, harbours extensive genome variability reflected in different metabolic repertoires. Genome variability within this species complex seems to underpin its capacity both to thrive in habitats ranging from the equator to the subarctic and to form large-scale episodic blooms under a wide variety of environmental conditions. PMID:23760476

  1. Visual texture segregation by the chimpanzee (Pan troglodytes).

    PubMed

    Tomonaga, M

    1999-03-01

    One adult male chimpanzee (Pan troglodytes) was trained to detect a target area consisting of texture elements from the background texture made of the different elements from the target area. The subject was given eight different stimulus conditions. In Condition 1, segregation was based on the difference of local feature of elements but not on global similarity. Conditions 2-3 investigated the effects of the number of terminators, which was considered as 'textons' in human texture perception. The chimpanzee showed better performance when the discrimination can be based on the difference of the number of terminators. This tendency, however, was reversed when the local salient feature (length of shorter lines) was enhanced, as in Enns' [15] study with humans as subjects. The subject showed asymmetries in segregation performance when discriminating based on gap (Conditions 4-5), line length (Condition 6), and regularity of line arrangement (Condition 7). Observed asymmetries were consistent with humans and with visual search asymmetries. The performance of texture segregation by the chimpanzee was consistent with humans, and the texture segregation is one of the useful tasks for comparative study of early vision as well as visual search task. PMID:10512587

  2. Terrafirma: A Pan-European Ground Motion Hazard Information Service

    NASA Astrophysics Data System (ADS)

    Cooksley, Geraint

    2010-12-01

    Supported by the European Space Agency's GMES programme, Terrafirma Stage 3 (TF3) is the continuation of the Terrafirma project, a pan-European ground motion hazard information service. This third stage of the project was launched in December of 2009 and has as its aim the sustainability of the terrain motion service. TF3 features a new focus on several thematic lines for terrain motion analysis: - Tectonics - Flooding - Hydrogeology (ground water issues, landslides & inactive mines) As in previous stages, TF3 services are based on advanced satellite interferometry products (in the main using Persistent Scatterer InSAR methodologies), however they exploit additional data sources, including non-EO, coupled with expert interpretation specific to each thematic line. In addition to the three thematic lines, a wide area terrain motion mapping service will be developed and tested. The project consortium is lead by Altamira Information, with the Dutch Geological Survey (TNO) leading the Flood Theme, the Italian National Institute of Geophysics and Volcanology (INGV) leading the Tectonics Theme, and the University of Florence (UNIFI) leading the Hydrogeology Theme. The Wide Area Mapping task is lead by the German Space Agency (DLR). Its services are delivered to civil protection agencies, disaster management organisms, and coastal, rail and motorway authorities to support the process of risk assessment and mitigation. An overview of the Terrafirma project and the main highlights of the third stage are given.

  3. Kalahari salt pans as sedimentary archives for reconstruction of Quaternary environments

    NASA Astrophysics Data System (ADS)

    Schüller, Irka; Belz, Lukas; Wilkes, Heinz; Wehrmann, Achim

    2015-04-01

    Environmental changes in southern Africa come along with variations in atmospheric and oceanic circulation as well as anthropogenic caused landuse changes. The reconstruction of the paleoenvironment is complicated by the fact that continuous geoarchives are rare in the semiarid to arid parts of this region. In the south-western Kalahari lacustrine systems with constant sedimentary records are absent due to the low precipitation. Salt pans are common geomorphological structures in the Kalahari which are temporarily flooded during summer season when isolated showers occur in their local catchment area. So, they are potential archives preserving environmental signals in phases of sedimentation. However, marginal dunes on their leeward sides represent phases of deflation. The principle processes in salt pan formation are complex and so far under discussion. Our study follows a multidisciplinary approach integrating sedimentological, geochemical and microbiological methods to understand the formation of salt pans as a prerequisite for using them as geoarchives in reconstruction of the paleoenvironmental condition during phases of sedimentation and erosion. Sediment cores from five salt pans were analysed using XRD, XRF and grain size analyses. Additionally, age models can be given for four salt pans, based on δ14C from bulk sediment TOC. As palynological material is lacking, different methods in organic geochemistry were applied (plant biomarkers, particularly leaf wax n-alkanes and n-alcohols and their stable carbon and hydrogen isotopic signatures) to reconstruct variations in local vegetation assemblages. Our results allow a better understanding of the sedimentology of salt pans and their interpretation as discontinuous archives.

  4. Estimation of menthol in Pan Masala samples by a spectrophotometric method.

    PubMed

    Kannan, A; Das, M; Khanna, S K

    1997-01-01

    Recently, the Prevention of Food Adulteration Act of India has fixed the level of menthol addition to Pan Masala at 0.1%, therefore good manufacturing practice (GMP) should be adopted so that the samples do not exceed 0.1% menthol (1 mg/g). The estimation of menthol in Pan Masala samples involves steam distillation followed by reaction with p-dimethyl amino benzaldehyde (DMAB) in acidic medium to give a red colour which is read at 550 nm. The sensitivity of this procedure is 75 micrograms menthol per g sample. Using this method, 130 branded and 53 non-branded samples of Pan Masala were analysed for menthol content. Almost 25% of branded samples contained less than 1 mg menthol per g while 75% of samples contained 1.1-6.5 mg menthol per g Pan Masala. Non-branded Pan Masala contained 1 mg menthol per g in only 7.6% of samples. However, 92% of samples contained 1.1-6.5 mg menthol per g, suggesting that the addition of menthol is relatively higher in non-branded Pan Masala samples than in branded ones. PMID:9205565

  5. Membrane permeabilization of colistin toward pan-drug resistant Gram-negative isolates.

    PubMed

    Mohamed, Yasmine Fathy; Abou-Shleib, Hamida Moustafa; Khalil, Amal Mohamed; El-Guink, Nadia Mohamed; El-Nakeeb, Moustafa Ahmed

    2016-01-01

    Pan-drug resistant Gram-negative bacteria, being resistant to most available antibiotics, represent a huge threat to the medical community. Colistin is considered the last therapeutic option for patients in hospital settings. Thus, we were concerned in this study to demonstrate the membrane permeabilizing activity of colistin focusing on investigating its efficiency toward those pan-drug resistant isolates which represent a critical situation. We determined the killing dynamics of colistin against pan-drug resistant isolates. The permeability alteration was confirmed by different techniques as: leakage, electron microscopy and construction of an artificial membrane model; liposomes. Moreover, selectivity of colistin against microbial cells was also elucidated. Colistin was proved to be rapid bactericidal against pan-drug resistant isolates. It interacts with the outer bacterial membrane leading to deformation of its outline, pore formation, leakage of internal contents, cell lysis and finally death. Furthermore, variations in membrane composition of eukaryotic and microbial cells provide a key for colistin selectivity toward bacterial cells. Colistin selectively alters membrane permeability of pan-drug resistant isolates which leads to cell lysis. Colistin was proved to be an efficient last line treatment for pan-drug resistant infections which are hard to treat. PMID:26991296

  6. The use of tobacco and betel quid ('pan') among Bangladeshi women in West Yorkshire.

    PubMed

    Summers, R M; Williams, S A; Curzon, M E

    1994-03-01

    The high prevalence of oral cancer in South Asia has been linked to tobacco use particularly in conjunction with chewing betel quid or 'pan'. However, it is not known whether and to what extent these habits are practised by Asian people in the United Kingdom. Home based interviews using semi-structured questionnaires were undertaken among 296 first generation Bangladeshi women resident in inner-city Leeds and Bradford, West Yorkshire. 'Pan' was reportedly chewed by 282 (95 per cent) of the women, of whom 174 (62 per cent) added tobacco in leaf form, and 75 (27 per cent) as a component of zarda. Those who consumed more 'pans' daily were significantly older, less literate, had a lower educational attainment, and were more likely to believe that chewing betel quid was beneficial. Cigarette smoking was practised by 9 per cent, this group being older and having lived in the UK longer. Burnt tobacco leaves were used as an oral hygiene aid by 20 per cent. Over half (58 per cent) of the sample had never visited a dentist, the majority deeming it unnecessary. The use of tobacco and 'pan' imply an increased risk for oral cancer and precancer. Since 'pan' chewing is a traditional custom, health promotion within these communities would require a sensitive approach. Health personnel likely to be consulted by Asian groups who chew 'pan' should be aware of the danger to oral health posed by this practice. PMID:8193977

  7. North American Pan-Continental Droughts in Model Simulations of the Last Millennium

    NASA Astrophysics Data System (ADS)

    Coats, Sloan; Cook, Benjamin; Smerdon, Jason; Seager, Richard

    2015-04-01

    Pan-continental droughts in North America, or droughts that simultaneously affect a large percentage of the geographically and climatically distinct regions of the continent, present significant on-the-ground management challenges and, as such, are an important target for scientific research. The methodology of paleoclimate-model data comparisons is used herein to provide a more comprehensive understanding of pan-continental drought dynamics. Models are found to simulate pan-continental drought with the frequency and spatial patterns exhibited by the paleoclimate record. They do not, however, agree on the modes of atmosphere-ocean variability that produce pan-continental droughts because simulated El Niño-Southern Oscillation (ENSO), Pacific Decadal Oscillation (PDO) and Atlantic Multidecadal Oscillation (AMO) dynamics, and their teleconnections to North America, are different between models and observations. Despite these dynamical differences, models are able to reproduce large-magnitude centennial-scale variability in the frequency of pan-continental drought occurrence -- an important feature of the paleoclimate record. These changes do not appear to be tied to exogenous forcings, suggesting that simulated internal hydroclimate variability on these timescales is large in magnitude. Results both clarify understanding of the dynamics that produce real-world pan-continental droughts, while assessing the ability of models to accurately characterize future drought risks.

  8. An investigation of electrochemomechanical actuation of conductive Polyacrylonitrile (PAN) nanofiber composites

    NASA Astrophysics Data System (ADS)

    Gonzalez, Mark A.; Walter, Wayne W.

    2014-03-01

    A polymer-based nanofiber composite actuator designed for contractile actuation was fabricated by electrospinning, stimulated by electrolysis, and characterized by electrochemical and mechanical testing to address performance limitations and understand the activation processing effects on actuation performance. Currently, Electroactive polymers (EAPs) have provided uses in sensory and actuation technology, but have either low force output or expand rather than contract, falling short in capturing the natural kinetics and mechanics of muscle needed to provide breakthroughs in the bio-medical and robotic fields. In this study, activated Polyacrylonitrile (PAN) fibers have demonstrated biomimetic functionalities similar to the sarcomere contraction responsible for muscle function. Activated PAN has also been shown to contract and expand by electrolysis when in close vicinity to the anode and cathode, respectively. PAN nanofibers (~500 nm) especially show faster response to changes in environmental pH and improved mechanical properties compared to larger diameter fibers. Tensile testing was conducted to examine changes in mechanical properties between annealing and hydrolysis processing. Voltage driven transient effects of localized pH were examined to address pHdefined actuation thresholds of PAN fibers. Electrochemical contraction rates of the PAN/Graphite composite actuator demonstrated up to 25%/min. Strains of 58.8%, ultimate stresses up to 77.1 MPa, and moduli of 0.21 MPa were achieved with pure PAN nanofiber mats, surpassing mechanical properties of natural muscles. Further improvements, however, to contraction rates and Young's moduli were found essential to capture the function and performance of skeletal muscles appropriately.

  9. Smart Polyacrylonitrile (PAN) Nanofibers with Thermal Energy Storage and Retrieval Functionality

    NASA Astrophysics Data System (ADS)

    Cherry, De'Andre James

    Phase change materials (PCMs) are generally substances with a high heat of fusion in the process of solid to liquid phase change. The nature of PCMs make them efficient materials to store and retrieve large amounts of thermal energy. Presently, high efficiency thermal energy storage/retrieval in applications where flexibility and space saving are required, such as smart textiles, still remains as a challenge. In this study, lauric acid (LA) and myristic acid (MA) were combined to prepare a specific binary fatty acid eutectic (LA-MA) with a melting point near the operating body temperature of a human being and then encapsulated in polyacrylonitrile (PAN) nanofibers through the electrospinning technique. Functionalized PCM-enhanced PAN nanofibers containing LA-MA at 30%, 50%, 70% and 100% of the weight of the PAN were successfully synthesized. The morphological structures and thermal energy storage capacity of the PCM-enhanced PAN nanofibers were characterized by electron microscopy (EM) and differential scanning calorimetry (DSC). The novel PCM-enhanced PAN nanofibers maintained their cylindrical fiber morphology after multiple heating-cooling cycles and retained their latent heat storage functionality. Thus, it is envisioned that the prepared PCM-enhanced PAN nanofibers will find use in applications such as smart textiles where temperature regulation functionality is required.

  10. Fabrication of an aluminum, Caribbean-style, musical pan: Metallurgical and acoustical characterization

    SciTech Connect

    Murr, L.E. . E-mail: fekberg@utep.edu; Esquivel, E.V.; Lawrie, S.C.; Lopez, M.I.; Lair, S.L.; Soto, K.F.; Gaytan, S.M.; Bujanda, D.; Kerns, R.G.; Guerrero, P.A.; Flores, J.A.

    2006-12-15

    We report herein the first development and fabrication of a 6061 aluminum alloy pan and compare its tuning and acoustic spectra for selected notes with a standard low-carbon steel Caribbean pan fabricated from a 210-L barrel. The experimental aluminum alloy pan was completely manufactured by welding a 1.68-mm-thick head sheet to a 9-mm{sup 2} aluminum alloy hoop, sinking the head by pneumatic hammering and welding a 1.15-mm-thick aluminum alloy side or skirt to the hoop. This experimental pan was 0.66 m in diameter, in contrast to the 210-L steel barrel standard, which had a diameter of 0.57 m. Chromatic tones were observed for most rim notes on the aluminum alloy pan, but the highest octave range notes at the pan bottom were not tuned. Microstructural characterization by light optical metallography and transmission electron microscopy illustrated the necessity for high dislocation densities and associated hardness in order to stabilize the notes and to assure their chromatic tuning.

  11. Rationale and design of the Pan-African Sudden Cardiac Death survey: the Pan-African SCD study

    PubMed Central

    Bonny, Aimé; Bonny, Aimé; Ngantcha, Marcus; Ndongo Amougou, Sylvie; Kane, Adama; Marrakchi, Sonia; Okello, Emmy; Taty, Georges; Gehani, Abdulrrazzak; Diakite, Mamadou; Talle, Mohammed A; Lambiase, Pier D; Houenassi, Martin; Chin, Ashley; Otieno, Harun; Temu, Gloria; Koffi Owusu, Isaac; Karaye, Kamilu M; Awad, Abdalla AM; Gregers Winkel, Bo; Priori, Silvia G; Priori, Silvia G

    2014-01-01

    Summary Background The estimated rate of sudden cardiac death (SCD) in Western countries ranges from 300 000 to 400 000 annually, which represents 0.36 to 1.28 per 1 000 inhabitants in Europe and the United States. The burden of SCD in Africa is unknown. Our aim is to assess the epidemiology of SCD in Africa. Methods The Pan-Africa SCD study is a prospective, multicentre, community-based registry monitoring all cases of cardiac arrest occurring in victims over 15 years old. We will use the definition of SCD as ‘witnessed natural death occurring within one hour of the onset of symptoms’ or ‘unwitnessed natural death within 24 hours of the onset of symptoms’. After appro val from institutional boards, we will record demographic, clinical, electrocardiographic and biological variables of SCD victims (including survivors of cardiac arrest) in several African cities. All deaths occurring in residents of districts of interest will be checked for past medical history, circumstances of death, and autopsy report (if possible). We will also analyse the employment of resuscitation attempts during the time frame of sudden cardiac arrest (SCA) in various patient populations throughout African countries. Conclusion This study will provide comprehensive, contemporary data on the epidemiology of SCD in Africa and will help in the development of strategies to prevent and manage cardiac arrest in this region of the world. PMID:25192301

  12. Model-Data Comparisons of Pan-Continental Drought over North America during the Common Era

    NASA Astrophysics Data System (ADS)

    Coats, S.; Smerdon, J. E.; Seager, R.; Cook, B.

    2014-12-01

    Pan-continental droughts, or droughts that simultaneously affect a large percentage of the geographically and climatically distinct regions of North America, present significant on-the-ground management challenges and, as such, are an important target for scientific research. There are, however, two fundamental reasons why a comprehensive characterization of pan-continental droughts, and their causes, proves challenging: 1) Regional hydroclimate in North America is characterized by distinct atmosphere-ocean dynamics; 2) The relative rarity of pan-continental drought and the short (~150 year) observational record mean that there are few events by which to diagnose how these relatively distinct regional hydroclimate dynamics can combine to produce pan-continental drought. The paradigm of model-data comparisons on paleoclimatic timescales is used herein to extend the North American drought record and to simulate potential atmosphere-ocean states during pan-continental droughts, which together provide a more comprehensive understanding of pan-continental drought dynamics. Specifically, six forced transient simulations of the last millennium from the CMIP5/PMIP3 archives are analyzed in conjunction with gridded tree-ring reconstructions of hydroclimate variability from the North American Drought Atlas (NADA). Models are found to simulate pan-continental drought with the frequency and spatial patterns exhibited by the NADA. They do not, however, agree on the modes of atmosphere-ocean variability that produce pan-continental droughts. This is because simulated ENSO, PDO and AMO dynamics, and their teleconnections to North America, are different between models and observations. Despite these dynamical differences, models are also able to reproduce large-magnitude centennial-scale variability in the frequency of pan-continental drought occurrence—an important feature of the paleoclimate record. These changes do not appear to be tied to exogenous forcings, suggesting that

  13. 2nd Pan American Workshop on Plant Membrane Biology

    SciTech Connect

    Kendal Hirschi

    2006-05-15

    The entire DOE funds were used to provide funds for students, postdoctoral fellows and faculty to attend the Plant Membrane Plant Biology meeting from May 17-21, 2006 in South Padre Texas. The final program can be found at: http://www.panamericanplantmembranebiologyworkshop.org/secondmeeting/Program.htm The meeting had an attendance of approximately 130 people from approximately 10 different countries. The location was selected for its proximity to the US-Mexico border. This was the second Pan American Plant Membrane Biology meeting (2003 for the first one) and it was a great success as we forged research relationships between South America and the United States. We provided an opportunity for researchers from the Western Hemisphere to exchange the most recent information and ideas relating to the biology of plant membranes in a workshop environment. The conference addressed such topics as Hormone Responses, Environmental Signal Perception, Nutrient Acquisition, Membranes and Development, Source/Sink Transport, Water Relations,Genomics, Evolution of Transporters, Structure/Function Relationships and Practical Applications of Membrane Research. Oral and poster presentations were thematically grouped and sessions included a representative mixture of experimental and intellectual approaches to important topics in plant membrane biology. Sections were led by prominent researchers in the specific focus area with talks presented by postdocs, graduate students, and undergraduate researchers. In keeping with the workshop format, provisions were made for extended discussion following talks. PIs and faculty advisors of speakers attended and contributed to the discussion of presentations. The lineup included forty speakers. The next meeting has already been scheduled for 2009 in Mexico: http://www.panamericanplantmembranebiologyworkshop.org Scientific collaborations and synergistic collaborations were formed. Participants from the meeting include women, minorities and

  14. THE FIRST HIGH-REDSHIFT QUASAR FROM Pan-STARRS

    SciTech Connect

    Morganson, Eric; De Rosa, Gisella; Decarli, Roberto; Walter, Fabian; Rix, Hans-Walter; Chambers, Ken; Burgett, William; Flewelling, Heather; Hodapp, Klaus; Kaiser, Nick; Magnier, Eugene; Sweeney, Bill; Waters, Christopher; McGreer, Ian; Fan, Xiaohui; Greiner, Jochen; Price, Paul

    2012-06-15

    We present the discovery of the first high-redshift (z > 5.7) quasar from the Panoramic Survey Telescope and Rapid Response System 1 (Pan-STARRS1 or PS1). This quasar was initially detected as an i{sub P1} dropout in PS1, confirmed photometrically with the SAO Wide-field InfraRed Camera at Arizona's Multiple Mirror Telescope (MMT) and the Gamma-Ray Burst Optical/Near-Infrared Detector at the MPG 2.2 m telescope in La Silla. The quasar was verified spectroscopically with the MMT Spectrograph, Red Channel and the Cassegrain Twin Spectrograph at the Calar Alto 3.5 m telescope. Its near-infrared spectrum was taken at the Large Binocular Telescope Observatory (LBT) with the LBT Near-Infrared Spectroscopic Utility with Camera and Integral Field Unit for Extragalactic Research. It has a redshift of 5.73, an AB z{sub P1} magnitude of 19.4, a luminosity of 3.8 Multiplication-Sign 10{sup 47} erg s{sup -1}, and a black hole mass of 6.9 Multiplication-Sign 10{sup 9} M{sub Sun }. It is a broad absorption line quasar with a prominent Ly{beta} peak and a very blue continuum spectrum. This quasar is the first result from the PS1 high-redshift quasar search that is projected to discover more than 100 i{sub P1} dropout quasars and could potentially find more than 10 z{sub P1} dropout (z > 6.8) quasars.

  15. A multimodel simulation of pan-Arctic hydrology

    NASA Astrophysics Data System (ADS)

    Slater, A. G.; Bohn, T. J.; McCreight, J. L.; Serreze, M. C.; Lettenmaier, D. P.

    2007-12-01

    We compare the performance of five land surface models (Chameleon Surface Model (CHASM), Noah, Community Land Model (CLM), Variable Infiltration Capacity Model (VIC), European Centre for Medium Range Weather Forecasts (ECMWF)), in the simulation of hydrological processes across the terrestrial Arctic drainage system for the period 1980-2001. The models represent a wide range of model physics, particularly with respect to high-latitude processes, and are forced with surface meteorology derived from the ERA-40 reanalysis. Models offer great potential for enlightenment regarding large-scale hydrology in this poorly observed region; thus our objective is to assess the ability of the models to capture various aspects of pan-Arctic hydrology as well as identify those features that contain the largest uncertainty. Results reveal up to a 30% difference in annual partitioning of precipitation between evaporation and runoff with major Arctic watersheds such as the Lena. Capturing the correct base flow of the large rivers is a consistent problem. The model hydrographs are often out of phase, peaking too early in comparison to observations. However, allowing for a large uptake in soil moisture as well as moisture movement during frozen periods alleviates this discrepancy. A negative correlation exists between models and observations for annual runoff time series over the Yenesi basin, apparently mostly because of inconsistencies in the input data. Compared to station data, all models produce similar errors in snow water equivalent; yet they differ widely in their snow regimes in terms of snowfall quantity, estimated snow depths, and most importantly, sublimation rates. Additionally, model albedo is consistently higher than observations in the presence of snow. No single model is the best or worst performing when compared to a range of observations.

  16. Measuring quasar variability with Pan-STARRS1 and SDSS

    SciTech Connect

    Morganson, E.; Rix, H.-W.; Schlafly, E. F.; Walter, F.; Burgett, W. S.; Chambers, K. C.; Kaiser, N.; Magnier, E. A.; Morgan, J. S.; Tonry, J. L.; Green, P. J.; Marshall, P. J.; Price, P. A.

    2014-04-01

    We measure quasar variability using the Panoramic Survey Telescope and Rapid Response System 1 Survey (Pan-STARRS1 or PS1) and the Sloan Digital Sky Survey (SDSS) and establish a method of selecting quasars via their variability in 10{sup 4} deg{sup 2} surveys. We use 10{sup 5} spectroscopically confirmed quasars that have been well measured in both PS1 and SDSS and take advantage of the decadal timescales that separate SDSS measurements and PS1 measurements. A power law model fits the data well over the entire time range tested, 0.01-10 yr. Variability in the current PS1-SDSS data set can efficiently distinguish between quasars and nonvarying objects. It improves the purity of a griz quasar color cut from 4.1% to 48% while maintaining 67% completeness. Variability will be very effective at finding quasars in data sets with no u band and in redshift ranges where exclusively photometric selection is not efficient. We show that quasars' rest-frame ensemble variability, measured as a root mean squared in Δ magnitudes, is consistent with V(z, L, t) = A {sub 0}(1 + z){sup 0.37}(L/L {sub 0}){sup –0.16}(t/1 yr){sup 0.246}, where L {sub 0} = 10{sup 46} erg s{sup –1} and A {sub 0} = 0.190, 0.162, 0.147, or 0.141 in the g {sub P1}, r {sub P1}, i {sub P1}, or z {sub P1}filter, respectively. We also fit across all four filters and obtain median variability as a function of z, L, and λ as V(z, L, λ, t) = 0.079(1 + z){sup 0.15}(L/L {sub 0}){sup –0.2}(λ/1000 nm){sup –0.44}(t/1 yr){sup 0.246}.

  17. Pan-cancer analyses of the nuclear receptor superfamily

    PubMed Central

    Long, Mark D.; Campbell, Moray J.

    2016-01-01

    Nuclear receptors (NR) act as an integrated conduit for environmental and hormonal signals to govern genomic responses, which relate to cell fate decisions. We review how their integrated actions with each other, shared co-factors and other transcription factors are disrupted in cancer. Steroid hormone nuclear receptors are oncogenic drivers in breast and prostate cancer and blockade of signaling is a major therapeutic goal. By contrast to blockade of receptors, in other cancers enhanced receptor function is attractive, as illustrated initially with targeting of retinoic acid receptors in leukemia. In the post-genomic era large consortia, such as The Cancer Genome Atlas, have developed a remarkable volume of genomic data with which to examine multiple aspects of nuclear receptor status in a pan-cancer manner. Therefore to extend the review of NR function we have also undertaken bioinformatics analyses of NR expression in over 3000 tumors, spread across six different tumor types (bladder, breast, colon, head and neck, liver and prostate). Specifically, to ask how the NR expression was distorted (altered expression, mutation and CNV) we have applied bootstrapping approaches to simulate data for comparison, and also compared these NR findings to 12 other transcription factor families. Nuclear receptors were uniquely and uniformly downregulated across all six tumor types, more than predicted by chance. These approaches also revealed that each tumor type had a specific NR expression profile but these were most similar between breast and prostate cancer. Some NRs were down-regulated in at least five tumor types (e.g. NR3C2/MR and NR5A2/LRH-1)) whereas others were uniquely down-regulated in one tumor (e.g. NR1B3/RARG). The downregulation was not driven by copy number variation or mutation and epigenetic mechanisms maybe responsible for the altered nuclear receptor expression. PMID:27200367

  18. Barnacle Bill and Surrounding from Super-Pan

    NASA Technical Reports Server (NTRS)

    1997-01-01

    This is an image from the super-pan sequence. Of importance are some of the features around the rock nicknamed Barnacle Bill in the left foreground. The rock shows a 'streamlined tail' composed of particles deposited by wind on the leeward (downwind) side of the rock. Also seen is a 'moat' around the opposite (windward) side of the rock where either erosion (or non-deposition) of fine sediment has occurred. Mars Pathfinder scientist believe that the wind blowing over and around rocks like Barnacle Bill creates an airflow pattern wherein a buffer zone is formed immediately upwind of the rock and airflow patterns keep sediment from being deposited directly upwind of Barnacle Bill. On the downwind side, however, the airflow is complex and a small wake and tapered 'dead air zone' form. Sediment can be deposited within this region, the shape of the formed deposit corresponds to the airflow patterns that exist behind the rock. Similar features have been observed at the Viking landing sites, and are thought to form under high wind conditions during the autumn and winter seasons in the northern hemisphere. This image mosaic was processed by the U.S. Geological Survey in support of the NASA/JPL Mars Pathfinder Mars Mission.

    Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is a division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.

  19. Patterns of dental development in Homo, Australopithecus, Pan, and Gorilla.

    PubMed

    Smith, B H

    1994-07-01

    Smith ([1986] Nature 323:327-330) distinguished patterns of development of teeth of juvenile fossil hominids as being "more like humans" or "more like apes" based on statistical similarity to group standards. Here, this central tendency discrimination (CTD) is tested for its ability to recognize ape and human patterns of dental development in 789 subadult hominoids. Tooth development of a modern human sample (665 black southern Africans) was scored entirely by an outside investigator; pongid and fossil hominid samples (59 Pan, 50 Gorilla, and 14 fossil hominids) were scored by the author. The claim of Lampl et al. ([1993] Am. J. Phys. Anthropol. 90:113-127) that Smith's 1986 method succeeds in only 8% of human cases was not sustained. Figures for overall success of classification (87% humans, 68% apes) mask important effects of teeth sampled and age class. For humans, the power of CTD varied between 53% and 92% depending on the number and kind of teeth available--nearly that of a coin toss when data described only two nearby teeth, but quite successful with more teeth or distant teeth. For apes, only age class affected accuracy: "Infant" apes (M1 development < or = root cleft complete, unemerged) were usually classed as humans, probably because the present developmental standard for great apes is in substantial error under 3 years of age. "Juvenile" apes (M1 > or = root 1/4), however, were correctly discriminated in 87% of cases. Overall, CTD can be considered reliable (accuracy of 92% for humans and 88% for apes) when data contrast development of distant dental fields and subjects are juveniles (not infants). Restricting analysis of fossils to specimens satisfying these criteria, patterns of dental development of gracile australopithecines and Homo habilis remain classified with African apes. Those of Homo erectus and Neanderthals are classified with humans, suggesting that patterns of growth evolved substantially in the Hominidae. To standardize future research

  20. Welcome Back: Responses of Female Bonobos (Pan paniscus) to Fusions.

    PubMed

    Moscovice, Liza R; Deschner, Tobias; Hohmann, Gottfried

    2015-01-01

    In species with a high degree of fission-fusion social dynamics, fusions may trigger social conflict and thus provide an opportunity to identify sources of social tension and mechanisms related to its alleviation. We characterized behavioral and endocrine responses of captive female bonobos (Pan paniscus) to fusions within a zoo facility designed to simulate naturalistic fission-fusion social dynamics. We compared urinary cortisol levels and frequencies of aggression, grooming and socio-sexual interactions between female bonobos while in stable sub-groups and when one "joiner" was reunited with the "residents" of another sub-group. We hypothesized that fusions would trigger increases in aggression and cortisol levels among reunited joiners and resident females. We further predicted that females who face more uncertainty in their social interactions following fusions may use grooming and/or socio-sexual behavior to reduce social tension and aggression. The only aggression on reunion days occurred between reunited females, but frequencies of aggression remained low across non-reunion and reunion days, and there was no effect of fusions on cortisol levels. Fusions did not influence patterns of grooming, but there were increases in socio-sexual solicitations and socio-sexual interactions between joiners and resident females. Joiners who had been separated from residents for longer received the most solicitations, but were also more selective in their acceptance of solicitations and preferred to have socio-sexual interactions with higher-ranking residents. Our results suggest that socio-sexual interactions play a role in reintegrating female bonobos into social groups following fusions. In addition, females who receive a high number of solicitations are able to gain more control over their socio-sexual interactions and may use socio-sexual interactions for other purposes, such as to enhance their social standing. PMID:25996476

  1. Sex differences in tool use acquisition in bonobos (Pan paniscus).

    PubMed

    Boose, Klaree J; White, Frances J; Meinelt, Audra

    2013-09-01

    All the great ape species are known tool users in both the wild and captivity, although there is great variation in ability and behavioral repertoire. Differences in tool use acquisition between chimpanzees and gorillas have been attributed to differing levels of social tolerance as a result of differences in social structure. Chimpanzees also show sex differences in acquisition and both chimpanzees and bonobos demonstrate a female bias in tool use behaviors. Studies of acquisition are limited in the wild and between species comparisons are complicated in captivity by contexts that often do not reflect natural conditions. Here we investigated tool use acquisition in a captive group of naïve bonobos by simulating naturalistic conditions. We constructed an artificial termite mound fashioned after those that occur in the wild and tested individuals within a social group context. We found sex differences in latencies to attempt and to succeed where females attempted to fish, were successful more quickly, and fished more frequently than males. We compared our results to those reported for chimpanzees and gorillas. Males across all three species did not differ in latency to attempt or to succeed. In contrast, bonobo and chimpanzee females succeeded more quickly than did female gorillas. Female bonobos and female chimpanzees did not differ in either latency to attempt or to succeed. We tested the social tolerance hypothesis by investigating the relationship between tool behaviors and number of neighbors present. We also compared these results to those reported for chimpanzees and gorillas and found that bonobos had the fewest numbers of neighbors present. The results of this study do not support the association between number of neighbors and tool behavior reported for chimpanzees. However, bonobos demonstrated a similar sex difference in tool use acquisition, supporting the hypothesis of a female bias in tool use in Pan. PMID:23606188

  2. Visual homing with a pan-tilt based stereo camera

    NASA Astrophysics Data System (ADS)

    Nirmal, Paramesh; Lyons, Damian M.

    2013-01-01

    Visual homing is a navigation method based on comparing a stored image of the goal location and the current image (current view) to determine how to navigate to the goal location. It is theorized that insects, such as ants and bees, employ visual homing methods to return to their nest. Visual homing has been applied to autonomous robot platforms using two main approaches: holistic and feature-based. Both methods aim at determining distance and direction to the goal location. Navigational algorithms using Scale Invariant Feature Transforms (SIFT) have gained great popularity in the recent years due to the robustness of the feature operator. Churchill and Vardy have developed a visual homing method using scale change information (Homing in Scale Space, HiSS) from SIFT. HiSS uses SIFT feature scale change information to determine distance between the robot and the goal location. Since the scale component is discrete with a small range of values, the result is a rough measurement with limited accuracy. We have developed a method that uses stereo data, resulting in better homing performance. Our approach utilizes a pan-tilt based stereo camera, which is used to build composite wide-field images. We use the wide-field images combined with stereo-data obtained from the stereo camera to extend the keypoint vector described in to include a new parameter, depth (z). Using this info, our algorithm determines the distance and orientation from the robot to the goal location. We compare our method with HiSS in a set of indoor trials using a Pioneer 3-AT robot equipped with a BumbleBee2 stereo camera. We evaluate the performance of both methods using a set of performance measures described in this paper.

  3. A Pan-European and Cross-Discipline Metadata Portal

    NASA Astrophysics Data System (ADS)

    Widmann, Heinrich; Thiemann, Hannes; Lautenschlager, Michael

    2014-05-01

    In recent years, significant investments have been made to create a pan-European e-infrastructure supporting multiple and diverse research communities. This led to the establishment of the community-driven European Data Infrastructure (EUDAT) project that implements services to tackle the specific challenges of international and interdisciplinary research data management. The EUDAT metadata service B2FIND plays a central role in this context as a repository and a search portal for the diverse metadata collected from heterogeneous sources. For this we built up a comprehensive joint metadata catalogue and an open data portal and offer support for new communities interested in publishing their data within EUDAT. The implemented metadata ingestion workflow consists in three steps. First the metadata records - provided either by various research communities or via other EUDAT services - are harvested. Afterwards the raw metadata records are converted and mapped to unified key-value dictionaries. The semantic mapping of the non-uniform community specific metadata to homogenous structured datasets is hereby the most subtle and challenging task. Finally the mapped records are uploaded as datasets to the catalogue and displayed in the portal. The homogenisation of the different community specific data models and vocabularies enables not only the unique presentation of these datasets as tables of field-value pairs but also the faceted, spatial and temporal search in the B2FIND metadata portal. Furthermore the service provides transparent access to the scientific data objects through the given references in the metadata. We present here the functionality and the features of the B2FIND service and give an outlook of further developments.

  4. Possible roles of consolation in captive chimpanzees (Pan troglodytes).

    PubMed

    Palagi, Elisabetta; Cordoni, Giada; Borgognini Tarli, Silvana

    2006-01-01

    Empathy is a necessary prerequisite for the occurrence of consolation. The term "consolation" contains a hypothesis about function, which is distress alleviation. The present study aims to confirm the occurrence of consolation in captive chimpanzees via the post-conflict/matched-control method (PC-MC) and to suggest its possible roles. We collected 273 PC-MC pairs in the group of Pan troglodytes housed in the ZooParc de Beauval (France). We confirmed the presence of consolatory contacts (mean level of consolation, 49.5% +/- 22.3% SEM) in the colony. Consolation rates were significantly higher than reconciliation levels (mean level of reconciliation, 28.9% +/- 16.8% SEM). The level of consolation was greater in the absence of reconciliation than in the presence of it, suggesting that consolation might be an alternative behavior. As friendship and relatedness did not influence the occurrence of consolation, they did not seem to be the best prerequisites for this behavioral mechanism, at least in this chimpanzee colony. Affinitive contacts with third parties were significantly more frequent when the victim called attention to itself during severe aggressions by screaming. These high-pitched sounds seem to be useful in eliciting aid from conspecifics, as occurs in young humans. The occurrence of consolation reduced the likelihood of further attacks among group-members. From this perspective, both victims and consolers most likely gain potential advantages by interacting with each other when aggression is particularly severe, reconciliation is not immediate, and consequently social stress reaches high levels. PMID:16229027

  5. Observations of PAN and its confinement in the Asian summer monsoon anticyclone in high spatial resolution

    NASA Astrophysics Data System (ADS)

    Ungermann, Jörn; Ern, Mandfred; Kaufmann, Martin; Müller, Rolf; Spang, Reinhold; Ploeger, Felix; Vogel, Bärbel; Riese, Martin

    2016-07-01

    This paper presents an analysis of trace gases in the Asian summer monsoon (ASM) region on the basis of observations by the CRISTA infrared limb sounder taken in low-earth orbit in August 1997. The spatially highly resolved measurements of peroxyacetyl nitrate (PAN) and O3 allow a detailed analysis of an eddy-shedding event of the ASM anticyclone. We identify enhanced PAN volume mixing ratios (VMRs) within the main anticyclone and within the eddy, which are suitable as a tracer for polluted air originating in India and China. Plotting the retrieved PAN VMRs against potential vorticity (PV) and potential temperature reveals that the PV value at which the PAN VMRs exhibit the strongest decrease with respect to PV increases with potential temperature. These PV values might be used to identify the extent of the ASM. Using temperature values also derived from CRISTA measurements, we also computed the location of the thermal tropopause according to the WMO criterion and find that it confines the PAN anomaly vertically within the main ASM anticyclone. In contrast, the shed eddy exhibits enhanced PAN VMRs for 1 to 2 km above the thermal tropopause. Using the relationship between PAN as a tropospheric tracer and O3 as a stratospheric tracer to identify mixed air parcels, we further found the anticyclone to contain few such air parcels, whereas the region between the anticyclone and the eddy as well as the eddy itself contains many mixed air parcels. In combination, this implies that while the anticyclone confines polluted air masses well, eddy shedding provides a very rapid horizontal transport pathway of Asian pollution into the extratropical lowermost stratosphere with a timescale of only a few days.

  6. Observations of PAN and its confinement in the Asian Monsoon Anticyclone in high spatial resolution

    NASA Astrophysics Data System (ADS)

    Ungermann, Joern; Ploeger, Felix; Spang, Reinhold; Riese, Martin

    2016-04-01

    This talk presents a set of observations by the CRyogenic Infrared Spectrometers and Telescopes for the Atmosphere (CRISTA) infrared limb sounder on the SPAS platform in low-earth orbit. The spatially highly resolved trace gas measurements of six days in August 1997 allow a close look on the confinement of air masses within the Asian Summer Monsoon (ASM) anticyclone. Peroxyacetyl nitrate (PAN) is a secondary pollutant without sources in the stratosphere and acts as a tropospheric tracer. In combination with ozone as a stratospheric tracer, an eddy-shedding event of the ASM could be observed. The measured PAN volume mixing ratios (VMR) correlate well with potential vorticity (PV) derived from ECMWF ERA-Interim model data. Computing the gradient of PAN over PV on isentropes reveals that PAN VMR exhibit the strongest decrease at each isentrope for an increasing value of PV, which may be used to identify the extent of the ASM on that isentrope. CRISTA measurements also provide the temperature of measured air parcels and thus allow to derive the location of the thermal tropopause. We find that the thermal tropopause coincides with the border of the positive PAN anomaly both horizontally and vertically within the ASM anticyclone. In contrast, the shed eddy exhibits enhanced PAN VMRs for 1 to 2 km above the thermal tropopause. The amount of mixing may also be characterised by projecting the derived air parcels into tracer-tracer space using PAN and ozone as tropospheric and stratospheric tracer, respectively. This reveals that the anticyclone contains few mixed parcels in contrast to the region between the anticyclone and the shed eddy. This implies that while the anticyclone confines polluted air masses well, eddy shedding provides a very rapid horizontal transport pathway of Asian pollution into the extratropical lowermost stratosphere with a time scale of only a few days.

  7. 77 FR 40147 - Pan Am Southern, LLC.-Abandonment Exemption-in Worcester County, MA; Springfield Terminal Railway...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-07-06

    ...; Springfield Terminal Railway Company--Discontinuance of Service Exemption--in Worcester County, MA Pan Am Southern, LLC (PAS) and Springfield Terminal Railway Company (ST) (collectively, applicants) jointly...

  8. A Novel Partially Biobased PAN-Lignin Blend as a Potential Carbon Fiber Precursor

    PubMed Central

    Seydibeyoğlu, M. Özgür

    2012-01-01

    Blends of polyacrylonitrile (PAN) and lignin were prepared with three different lignin types by solution blending and solution casting. Among three types of lignin, one type was chosen and different blend concentrations were prepared and casted. The casted blend films were characterized chemically with fourier transform infrared spectroscopy (FTIR), and thermally with thermogravimetric analysis (TGA). The mechanical properties of the blends were measured using dynamic mechanical analysis (DMA). FTIR analysis shows an excellent interaction of PAN and lignin. The interaction of the lignins and PAN was confirmed by TGA analysis. The DMA results reveal that the lignin enhance the mechanical properties of PAN at room temperature and elevated temperatures. The blend structure and morphology were observed using scanning electron microscopy (SEM). SEM images show that excellent polymer blends were prepared. The results show that it is possible to develop a new precursor material with a blend of lignin and PAN. These studies show that the side product of paper and cellulosic bioethanol industries, namely, lignin can be used for new application areas. PMID:23118513

  9. PanDA: Exascale Federation of Resources for the ATLAS Experiment at the LHC

    NASA Astrophysics Data System (ADS)

    Barreiro Megino, Fernando; Caballero Bejar, Jose; De, Kaushik; Hover, John; Klimentov, Alexei; Maeno, Tadashi; Nilsson, Paul; Oleynik, Danila; Padolski, Siarhei; Panitkin, Sergey; Petrosyan, Artem; Wenaus, Torre

    2016-02-01

    After a scheduled maintenance and upgrade period, the world's largest and most powerful machine - the Large Hadron Collider(LHC) - is about to enter its second run at unprecedented energies. In order to exploit the scientific potential of the machine, the experiments at the LHC face computational challenges with enormous data volumes that need to be analysed by thousand of physics users and compared to simulated data. Given diverse funding constraints, the computational resources for the LHC have been deployed in a worldwide mesh of data centres, connected to each other through Grid technologies. The PanDA (Production and Distributed Analysis) system was developed in 2005 for the ATLAS experiment on top of this heterogeneous infrastructure to seamlessly integrate the computational resources and give the users the feeling of a unique system. Since its origins, PanDA has evolved together with upcoming computing paradigms in and outside HEP, such as changes in the networking model, Cloud Computing and HPC. It is currently running steadily up to 200 thousand simultaneous cores (limited by the available resources for ATLAS), up to two million aggregated jobs per day and processes over an exabyte of data per year. The success of PanDA in ATLAS is triggering the widespread adoption and testing by other experiments. In this contribution we will give an overview of the PanDA components and focus on the new features and upcoming challenges that are relevant to the next decade of distributed computing workload management using PanDA.

  10. High levels of Y-chromosome nucleotide diversity in the genus Pan.

    PubMed

    Stone, Anne C; Griffiths, Robert C; Zegura, Stephen L; Hammer, Michael F

    2002-01-01

    Although some mitochondrial, X chromosome, and autosomal sequence diversity data are available for our closest relatives, Pan troglodytes and Pan paniscus, data from the nonrecombining portion of the Y chromosome (NRY) are more limited. We examined approximately 3 kb of NRY DNA from 101 chimpanzees, seven bonobos, and 42 humans to investigate: (i) relative levels of intraspecific diversity; (ii) the degree of paternal lineage sorting among species and subspecies of the genus Pan; and (iii) the date of the chimpanzee/bonobo divergence. We identified 10 informative sequence-tagged sites associated with 23 polymorphisms on the NRY from the genus Pan. Nucleotide diversity was significantly higher on the NRY of chimpanzees and bonobos than on the human NRY. Similar to mtDNA, but unlike X-linked and autosomal loci, lineages defined by mutations on the NRY were not shared among subspecies of P. troglodytes. Comparisons with mtDNA ND2 sequences from some of the same individuals revealed a larger female versus male effective population size for chimpanzees. The NRY-based divergence time between chimpanzees and bonobos was estimated at approximately 1.8 million years ago. In contrast to human populations who appear to have had a low effective size and a recent origin with subsequent population growth, some taxa within the genus Pan may be characterized by large populations of relatively constant size, more ancient origins, and high levels of subdivision. PMID:11756656

  11. Disordered Eating and Food Restrictions in Children with PANDAS/PANS

    PubMed Central

    Hommer, Rebecca; Gerardi, Diana M.; Grant, Paul; Rothschild, Leah; D'Souza, Precilla; Williams, Kyle; Leckman, James; Swedo, Susan E.; Murphy, Tanya K.

    2015-01-01

    Abstract Objective: Sudden onset clinically significant eating restrictions are a defining feature of the clinical presentation of some of the cases of pediatric acute-onset neuropsychiatric syndrome (PANS). Restrictions in food intake are typically fueled by contamination fears; fears of choking, vomiting, or swallowing; and/or sensory issues, such as texture, taste, or olfactory concerns. However, body image distortions may also be present. We investigate the clinical presentation of PANS disordered eating and compare it with that of other eating disorders. Methods: We describe 29 patients who met diagnostic criteria for PANS. Most also exhibited evidence that the symptoms might be sequelae of infections with Group A streptococcal bacteria (the pediatric autoimmune neuropsychiatric disorder associated with streptococcal infections [PANDAS] subgroup of PANS). Results: The clinical presentations are remarkable for a male predominance (2:1 M:F), young age of the affected children (mean=9 years; range 5–12 years), acuity of symptom onset, and comorbid neuropsychiatric symptoms. Conclusions: The food refusal associated with PANS is compared with symptoms listed for the new Diagnostic and Statistical Manual of Mental Disorders, 5th ed. (DSM-V) diagnosis of avoidant/restrictive food intake disorder (ARFID). Treatment implications are discussed, as well as directions for further research. PMID:25329522

  12. Experience with ATLAS MySQL PanDA database service

    NASA Astrophysics Data System (ADS)

    Smirnov, Y.; Wlodek, T.; De, K.; Hover, J.; Ozturk, N.; Smith, J.; Wenaus, T.; Yu, D.

    2010-04-01

    The PanDA distributed production and analysis system has been in production use for ATLAS data processing and analysis since late 2005 in the US, and globally throughout ATLAS since early 2008. Its core architecture is based on a set of stateless web services served by Apache and backed by a suite of MySQL databases that are the repository for all PanDA information: active and archival job queues, dataset and file catalogs, site configuration information, monitoring information, system control parameters, and so on. This database system is one of the most critical components of PanDA, and has successfully delivered the functional and scaling performance required by PanDA, currently operating at a scale of half a million jobs per week, with much growth still to come. In this paper we describe the design and implementation of the PanDA database system, its architecture of MySQL servers deployed at BNL and CERN, backup strategy and monitoring tools. The system has been developed, thoroughly tested, and brought to production to provide highly reliable, scalable, flexible and available database services for ATLAS Monte Carlo production, reconstruction and physics analysis.

  13. Application of streptavidin mass spectrometric immunoassay tips for immunoaffinity based antibody phage display panning.

    PubMed

    Chin, Chai Fung; Ler, Lian Wee; Choong, Yee Siew; Ong, Eugene Boon Beng; Ismail, Asma; Tye, Gee Jun; Lim, Theam Soon

    2016-01-01

    Antibody phage display panning involves the enrichment of antibodies against specific targets by affinity. In recent years, several new methods for panning have been introduced to accommodate the growing application of antibody phage display. The present work is concerned with the application of streptavidin mass spectrometry immunoassay (MSIA™) Disposable Automation Research Tips (D.A.R.T's®) for antibody phage display. The system was initially designed to isolate antigens by affinity selection for mass spectrometry analysis. The streptavidin MSIA™ D.A.R.T's® system allows for easy attachment of biotinylated target antigens on the solid surface for presentation to the phage library. As proof-of-concept, a domain antibody library was passed through the tips attached with the Hemolysin E antigen. After binding and washing, the bound phages were eluted via standard acid dissociation and the phages were rescued for subsequent panning rounds. Polyclonal enrichment was observed for three rounds of panning with five monoclonal domain antibodies identified. The proposed method allows for a convenient, rapid and semi-automated alternative to conventional antibody panning strategies. PMID:26581498

  14. Measurements of peroxyacetyl nitrate (PAN) and peroxypropionyl nitrate (PPN) at selected urban, rural and remote sites

    NASA Technical Reports Server (NTRS)

    Singh, Hanwant B.; Salas, Louis J.

    1989-01-01

    PAN and PPN were measured in a series of eight field studies performed at urban, rural and remote locations in the contiguous U.S. during 1983-1985. Seven of the eight studies were performed in the winter/spring period, a period of sparsely available data. Nearly 2000 air samples were analyzed during these studies. Mean PAN and PPN levels in the range of 45-1600 ppt (max. 7.9 ppb) and 5-230 ppt (max. 0.9 ppb), respectively, were measured. Despite a great deal of observed variability, PAN and PPN showed virtually identical behavior at all sites and in all seasons, supporting the view that these nitrogenous compounds are produced and destroyed by very similar mechanisms. On the average PPN concentrations were about 8 percent (range 3-14 percent) of PAN values. It is inferred that PPN/PAN ratio is highest in urban areas and declines as polluted air masses are transported over long distances.

  15. Chronology of sand ridges and the Late Quaternary evolution of the Etosha Pan, Namibia

    NASA Astrophysics Data System (ADS)

    Hipondoka, M. H. T.; Mauz, B.; Kempf, J.; Packman, S.; Chiverrell, R. C.; Bloemendal, J.

    2014-01-01

    Etosha Pan, situated at the southern border of tropical Africa, is a vast endorheic plain in Namibia's semi-arid north. The most recent studies agree that the pan was the floor of a former lake with varying water levels. Here we explored this idea further by investigating the link between lake-level change and records of late Pleistocene and Holocene climate change. The varying lake levels were inferred through sediment analysis and optical dating of sand deposits that form ridges parallel to the current shore along the northern and western margins of the pan. Our results support the view that the sand ridges are shoreline deposits of an evaporitic lake. The ridges result from the interplay between intermittent river discharge and riverine sediment supply from the north, prevailing north-easterly wind and shore-parallel waves. Therefore they are a proxy for former levels of a perennial lake. We infer higher levels during the late Pleistocene and a drastic drop shortly after 10 ka. Since around 8 ka Etosha Pan was covered by a shallow water body. This lake water-level reconstruction is not in line with the histories of ITCZ migration and strength of Benguela current upwelling. We confirm that the linkages between the evolution of the Etosha Pan and the climate mechanisms driving hydrological changes in subtropical southwest Africa are poorly resolved and need further investigation.

  16. Pan-phylum Comparison of Nematode Metabolic Potential

    PubMed Central

    Tyagi, Rahul; Rosa, Bruce A.; Lewis, Warren G.; Mitreva, Makedonka

    2015-01-01

    C. elegans and the human hookworm Necator americanus. We illustrate how analyzing and comparing metabolism at the level of pathway modules can improve existing knowledge of nematode metabolic potential and can provide parasitism related insights. Our reconstruction and comparison of nematode metabolic pathways at a pan-phylum and inter-phylum level enabled determination of phylogenetic restrictions and differential expression of pathways. A visualization of our results is available at http://nematode.net and the program for identification of module completeness (modDFS) is freely available at SourceForge. The methods reported will help biologists to predict biochemical potential of any organism with available deduced proteome, to direct experiments and test hypotheses. PMID:26000881

  17. Rapidly evolving and luminous transients from Pan-STARRS1

    SciTech Connect

    Drout, M. R.; Chornock, R.; Soderberg, A. M.; Sanders, N. E.; McKinnon, R.; Milisavljevic, D.; Margutti, R.; Berger, E.; Calkins, M.; Fong, W.; Kirshner, R. P.; Lunnan, R.; Rest, A.; Foley, R. J.; Gezari, S.; Huber, M. E.; Kankare, E.; Mattila, S.; Leibler, C.; Marion, G. H.; and others

    2014-10-10

    In the past decade, several rapidly evolving transients have been discovered whose timescales and luminosities are not easily explained by traditional supernovae (SNe) models. The sample size of these objects has remained small due, at least in part, to the challenges of detecting short timescale transients with traditional survey cadences. Here we present the results from a search within the Pan-STARRS1 Medium Deep Survey (PS1-MDS) for rapidly evolving and luminous transients. We identify 10 new transients with a time above half-maximum (t {sub 1/2}) of less than 12 days and –16.5 > M > –20 mag. This increases the number of known events in this region of SN phase space by roughly a factor of three. The median redshift of the PS1-MDS sample is z = 0.275 and they all exploded in star-forming galaxies. In general, the transients possess faster rise than decline timescale and blue colors at maximum light (g {sub P1} – r {sub P1} ≲ –0.2). Best-fit blackbodies reveal photospheric temperatures/radii that expand/cool with time and explosion spectra taken near maximum light are dominated by a blue continuum, consistent with a hot, optically thick, ejecta. We find it difficult to reconcile the short timescale, high peak luminosity (L > 10{sup 43} erg s{sup –1}), and lack of UV line blanketing observed in many of these transients with an explosion powered mainly by the radioactive decay of {sup 56}Ni. Rather, we find that many are consistent with either (1) cooling envelope emission from the explosion of a star with a low-mass extended envelope that ejected very little (<0.03 M {sub ☉}) radioactive material, or (2) a shock breakout within a dense, optically thick, wind surrounding the progenitor star. After calculating the detection efficiency for objects with rapid timescales in the PS1-MDS we find a volumetric rate of 4800-8000 events yr{sup –1} Gpc{sup –3} (4%-7% of the core-collapse SN rate at z = 0.2).

  18. Rapidly Evolving and Luminous Transients from Pan-STARRS1

    NASA Astrophysics Data System (ADS)

    Drout, M. R.; Chornock, R.; Soderberg, A. M.; Sanders, N. E.; McKinnon, R.; Rest, A.; Foley, R. J.; Milisavljevic, D.; Margutti, R.; Berger, E.; Calkins, M.; Fong, W.; Gezari, S.; Huber, M. E.; Kankare, E.; Kirshner, R. P.; Leibler, C.; Lunnan, R.; Mattila, S.; Marion, G. H.; Narayan, G.; Riess, A. G.; Roth, K. C.; Scolnic, D.; Smartt, S. J.; Tonry, J. L.; Burgett, W. S.; Chambers, K. C.; Hodapp, K. W.; Jedicke, R.; Kaiser, N.; Magnier, E. A.; Metcalfe, N.; Morgan, J. S.; Price, P. A.; Waters, C.

    2014-10-01

    In the past decade, several rapidly evolving transients have been discovered whose timescales and luminosities are not easily explained by traditional supernovae (SNe) models. The sample size of these objects has remained small due, at least in part, to the challenges of detecting short timescale transients with traditional survey cadences. Here we present the results from a search within the Pan-STARRS1 Medium Deep Survey (PS1-MDS) for rapidly evolving and luminous transients. We identify 10 new transients with a time above half-maximum (t 1/2) of less than 12 days and -16.5 > M > -20 mag. This increases the number of known events in this region of SN phase space by roughly a factor of three. The median redshift of the PS1-MDS sample is z = 0.275 and they all exploded in star-forming galaxies. In general, the transients possess faster rise than decline timescale and blue colors at maximum light (g P1 - r P1 lsim -0.2). Best-fit blackbodies reveal photospheric temperatures/radii that expand/cool with time and explosion spectra taken near maximum light are dominated by a blue continuum, consistent with a hot, optically thick, ejecta. We find it difficult to reconcile the short timescale, high peak luminosity (L > 1043 erg s-1), and lack of UV line blanketing observed in many of these transients with an explosion powered mainly by the radioactive decay of 56Ni. Rather, we find that many are consistent with either (1) cooling envelope emission from the explosion of a star with a low-mass extended envelope that ejected very little (<0.03 M ⊙) radioactive material, or (2) a shock breakout within a dense, optically thick, wind surrounding the progenitor star. After calculating the detection efficiency for objects with rapid timescales in the PS1-MDS we find a volumetric rate of 4800-8000 events yr-1 Gpc-3 (4%-7% of the core-collapse SN rate at z = 0.2).

  19. Environmental controls on Pan-Arctic wetland methane emissions

    NASA Astrophysics Data System (ADS)

    Chen, Xiaodong; Bohn, Theodore; Lettenmaier, Dennis

    2015-04-01

    Environmental conditions such as soil temperature and moisture, incident solar radiation, and atmospheric carbon dioxide concentration are important environmental controls on methane emissions from northern wetlands. We investigated the spatio-temporal distributions of influence of these factors over northern wetland methane emissions via the Variable Infiltration Capacity (VIC) model. We simulated methane emissions from wetlands across the Pan-Arctic domain over the period 1948-2006, with annual average emissions of 35.1±6.7 TgCH4/year. From control simulations that each held one environmental factor constant, we characterized sensitivities to air temperature, precipitation, incident long- and short-wave radiation, and atmospheric [CO2] as a function of average summer air temperature and precipitation. Trade-offs between air temperature and precipitation caused maximal emissions to occur along a line in precipitation-temperature space with a slope of approximately 13 mm month-1 / K, leading to separation of wetlands into various combinations of water-limited and temperature-limited regimes. Emissions from relatively warm and dry wetlands in the southern (permafrost-free) portion of the domain tended to be positively correlated with precipitation and negatively correlated with air temperature, while emissions from wetter and colder wetlands further north (permafrost) tended to be positively correlated with air temperature. Over the period 1960-2006, emissions increased by 20%, over 90% of which can be attributed to climate change, with summer air temperatures explaining the majority of the variance. We estimated future emissions in response to CMIP5 model projections under the RCP4.5 scenario via two methods: (1) the VIC model and (2) the temperature- and precipitation-dependent sensitivities computed from the historical simulation. The two methods yielded similar projections of emissions, with end-of-century emissions at 142% of present-day levels, accompanied by

  20. Laterality of hand function in naturalistically housed chimpanzees (Pan troglodytes).

    PubMed

    Fletcher, Alison W; Weghorst, Jennifer A

    2005-05-01

    Studies of laterality of hand function in chimpanzees (Pan troglodytes) have the potential to tell us about the origins of handedness in Homo sapiens. However, the data are confusing, with discrepancies present between studies done in the field and the laboratory: the former show wild chimpanzees to be unlateralised at the population level, while the latter show captive chimpanzees as lateralised at the population level. This study of 26 semi-free ranging chimpanzees of Chester Zoo, UK, aimed to investigate a situation between the wild and captivity and provided ethological data for 43 categories of spontaneous manual use and 14 categories of tool use. Other variables recorded were subordinate hand activity, whether the subject was arboreal or terrestrial, and the identity of the subject. Using switching focal subject sampling, 23,978 bouts of hand use and 1,090 bouts of tool use were recorded. No population-level handedness was present for manual non-tool use activities in the naturalistically housed chimpanzees of Chester Zoo in a similar way to studies of wild chimpanzees. However, about half of the individuals were lateralised to one side or the other for the foraging behaviours of pick up, eat, and pluck. Using a modified version of McGrew and Marchant's (1997) Laterality Framework, these results are comparable to some wild and captive populations for similar foraging tasks. Bimanuality was rare and thus prevented comparison with captive experimental studies that have reported population right handedness. Behaviour involving contact with water elicited stronger lateralisation. Chester chimpanzees were more likely to exhibit hand preferences for manual tasks with increasing age but there were no effects of sex or rearing history on hand specialisations in adult individuals. Lateralisation was biased in tool use, which evoked significant left hand preferences in half the individuals, with no effect of age. Results are discussed comparatively with reference to

  1. Pan-phylum Comparison of Nematode Metabolic Potential.

    PubMed

    Tyagi, Rahul; Rosa, Bruce A; Lewis, Warren G; Mitreva, Makedonka

    2015-05-01

    C. elegans and the human hookworm Necator americanus. We illustrate how analyzing and comparing metabolism at the level of pathway modules can improve existing knowledge of nematode metabolic potential and can provide parasitism related insights. Our reconstruction and comparison of nematode metabolic pathways at a pan-phylum and inter-phylum level enabled determination of phylogenetic restrictions and differential expression of pathways. A visualization of our results is available at http://nematode.net and the program for identification of module completeness (modDFS) is freely available at SourceForge. The methods reported will help biologists to predict biochemical potential of any organism with available deduced proteome, to direct experiments and test hypotheses. PMID:26000881

  2. Detection of known meteoroid streams using Pan-STARRS

    NASA Astrophysics Data System (ADS)

    Weryk, Robert J.; Wainscoat, Richard J.

    2015-11-01

    Meteors are produced from meteoroids that are Near Earth Objects (NEOs). Created from the disruption of comets and asteroids, their study allows for the physical and chemical properties of parent bodies to be better constrained. Because most meteoroids are too small to be directly observed in space, ground-based camera networks (such as Weryk et al., 2008) are often used to detect fireballs produced from centimetre sized objects, and their mass influx can be extrapolated to larger sizes.The mass/size distribution of meteoroid streams is an important topic, relating directly to the impact hazard to the Earth (see Brown et al., 2015). Unfortunately, the largest meteoroids interact with the Earth’s atmosphere so infrequently that their observation is very biased and not predictable, but due to their large size, they may be visible in space. Barabanov and Smirnov (2005) presented detections of large possibly cometary meteoroids over 5 m in diameter, but their results could not be confirmed by Beech et al. (2004). More recently, Micheli and Tholen (2015) looked for objects in the meteoroid streams of several major showers, but found no stream objects.The Pan-STARRS1 (PS1) telescope, operated by the University of Hawai`i, has a large seven square degree field-of-view which can reliably detect new NEOs. However, not every NEO candidate is followed up and linked into a well established orbit, possibly due to the fact that the smallest bodies will not be visible at the sensitivity limit of PS1 for very long, or that their predicted orbit is uncertain so follow up telescopes look in the wrong location. In this work, we present our results to date about searching for potential meteoroid streams (with an emphasis on cometary streams) with the PS1 telescope using its multi-year database of unlinked NEO detections. For recent observations, where possible, we have observed the true non-geocentric radiants directly during peak shower activity. The detection of known meteoroid

  3. Mineralogy and geochemistry of the sediments of the Etosha Pan Region in northern Namibia: a reconstruction of the depositional environment

    NASA Astrophysics Data System (ADS)

    Buch, M. W.; Rose, D.

    1996-04-01

    The paper presents the results of mineralogical and chemical analyses of the clay fraction (<2 μm) of samples from boreholes in the Etosha Pan and smaller pans of the Owambo-Pans-Plain in the Etosha National Park, northern Namibia. Four mineral associations can be differentiated within the vertical succession of the profiles in the Etosha Pan: I) analcime/K-feldspar and mica association; II) analcime/K-feldspar and sepiolite (loughlinite) association; III) expandable sheet silicate (saponite/stevensite) association; and IV) calcite and dolomite association. These mineral associations are the expression of the seasonal saline-alkaline to calciferous, saline-alkaline environment of the present Etosha Pan. The sedimentological and pedological descriptions, combined with the results of the mineralogical and chemical analyses, show a clear differentiation of the profiles of the Etosha Pan in: i) disintegrated sedimentary rocks of the Andoni Formation (mineral association I); ii) par-autochthonous sediments (mineral associations I and II); and iii) allochthonous sediments (mineral associations III and IV). Based on this vertical mineralogical differentiation, four sedimentological-mineralogical/ chemical zones are defined for the actual floor of the Etosha Pan. The zonation shows that a thin cover of allochthonous sediments is only present along the southern margin of the Etosha Pan, including Fisher's Pan. The results support the hypothesis that the Etosha Pan is an erosional form rather than a palaeolake. In principle, the zonal configuration of the recent allochthonous and parautochthonous sediments identified on the Etosha Pan provides a small-scale depositional environment model for the formation of the Etosha limestone and sediments of the Andoni Formation during the Oligocene and Miocene. Thus, the findings help to reconstruct the depositional environment of the evolution of the extensive depocentre of the Etosha basin during the Late Tertiary.

  4. gLExec Integration with the ATLAS PanDA Workload Management System

    NASA Astrophysics Data System (ADS)

    Karavakis, E.; Barreiro, F.; Campana, S.; De, K.; Di Girolamo, A.; Litmaath, M.; Maeno, T.; Medrano, R.; Nilsson, P.; Wenaus, T.

    2015-12-01

    ATLAS user jobs are executed on Worker Nodes (WNs) by pilots sent to sites by pilot factories. This paradigm serves to allow a high job reliability and although it has clear advantages, such as making the working environment homogeneous, the approach presents security and traceability challenges. To address these challenges, gLExec can be used to let the payloads for each user be executed under a different UNIX user id that uniquely identifies the ATLAS user. This paper describes the recent improvements and evolution of the security model within the ATLAS PanDA system, including improvements in the PanDA pilot, in the PanDA server and their integration with MyProxy, a credential caching system that entitles a person or a service to act in the name of the issuer of the credential. Finally, it presents results from ATLAS user jobs running with gLExec and describes the deployment campaign within ATLAS.

  5. Pan-Cancer Analysis for Studying Cancer Stage using Protein Expression Data

    PubMed Central

    Mishra, Sameer; Kaddi, Chanchala D.; Wang, May D.

    2016-01-01

    Pan-cancer analyses attempt to discover similar features among multiple cancers in order to identify fundamental patterns common to cancer development and progression. Pan-cancer analysis at the level of protein expression is particularly important because protein expression is more immediately related to patient phenotype than genomic or transcriptomic data. This study aims to analyze differentially expressed (DE) proteins between early and advanced cases of multiple cancer types through the usage of reverse-phase protein array data. The relevance of these proteins is further investigated by developing predictive models using K-nearest neighbor and linear discriminant analysis classifiers. The results of this study suggest that a pan-cancer analysis may be highly complementary to standard analysis of an individual cancer for identifying biologically relevant DE proteins, and can assist in developing effective predictive models for cancer progression. PMID:26738195

  6. Application of thermal model for pan evaporation to the hydrology of a defined medium, the sponge

    NASA Technical Reports Server (NTRS)

    Trenchard, M. H.; Artley, J. A. (Principal Investigator)

    1981-01-01

    A technique is presented which estimates pan evaporation from the commonly observed values of daily maximum and minimum air temperatures. These two variables are transformed to saturation vapor pressure equivalents which are used in a simple linear regression model. The model provides reasonably accurate estimates of pan evaporation rates over a large geographic area. The derived evaporation algorithm is combined with precipitation to obtain a simple moisture variable. A hypothetical medium with a capacity of 8 inches of water is initialized at 4 inches. The medium behaves like a sponge: it absorbs all incident precipitation, with runoff or drainage occurring only after it is saturated. Water is lost from this simple system through evaporation just as from a Class A pan, but at a rate proportional to its degree of saturation. The contents of the sponge is a moisture index calculated from only the maximum and minium temperatures and precipitation.

  7. Evolution of the ATLAS PanDA Production and Distributed Analysis System

    NASA Astrophysics Data System (ADS)

    Maeno, T.; De, K.; Wenaus, T.; Nilsson, P.; Walker, R.; Stradling, A.; Fine, V.; Potekhin, M.; Panitkin, S.; Compostella, G.

    2012-12-01

    The PanDA (Production and Distributed Analysis) system has been developed to meet ATLAS production and analysis requirements for a data-driven workload management system capable of operating at LHC data processing scale. PanDA has performed well with high reliability and robustness during the two years of LHC data-taking, while being actively evolved to meet the rapidly changing requirements for analysis use cases. We will present an overview of system evolution including automatic rebrokerage and reattempt for analysis jobs, adaptation for the CernVM File System, support for the multi-cloud model through which Tier-2 sites act as members of multiple clouds, pledged resource management and preferential brokerage, and monitoring improvements. We will also describe results from the analysis of two years of PanDA usage statistics, current issues, and plans for the future.

  8. Scale Up of Pan Coating Process Using Quality by Design Principles.

    PubMed

    Agrawal, Anjali M; Pandey, Preetanshu

    2015-11-01

    Scale up of pan coating process is of high importance to the pharmaceutical and food industry. The number of process variables and their interdependence in a pan coating process can make it a rather complex scale-up problem. This review discusses breaking down the coating process variables into three main categories: pan-related, spray-related, and thermodynamic-related factors. A review on how to scale up each of these factors is presented via two distinct strategies--"macroscopic" and "microscopic" scale-up. In a Quality by Design paradigm, where an increased process understanding is required, there is increased emphasis on "microscopic" scale-up, which by definition ensures a more reproducible process and thereby robust scale-up. This article also reviews the various existing and new modeling and process analytical technology tools that can provide additional information to facilitate a more fundamental understanding of the coating process. PMID:26202540

  9. Trends in Dengue Cases Imported into the United States from Pan America 2001-2012.

    PubMed

    van Dodewaard, Caitlin A M; Richards, Stephanie L

    2015-01-01

    The objective of this study was to improve risk assessments of travel on dengue (DEN) virus (DENV) distribution. We investigated the exposure risk of US citizens traveling to DEN-endemic Pan American countries. The number of DEN cases reported in 51 Pan American countries from 2001 to 2012 was compared to the population of the same countries. The number of US travelers visiting the Pan American countries was categorized by region, and travel-related DEN infections were analyzed. US residents visiting the Dominican Republic exhibited the highest traveler-related DEN incidence. Brazil showed the most DEN cases in its residents (>1 million reported cases in 2010). The number of DEN cases continues to rise as does international travel and the geographic range of potential DENV vectors. DENV risk assessments may be improved by analyzing the possible routes of entry. Underreporting remains an issue for calculating DENV transmission risk by country and region. PMID:26766913

  10. The discovery of novel isoflavone pan peroxisome proliferator-activated receptor agonists.

    PubMed

    Matin, Azadeh; Doddareddy, Munikumar Reddy; Gavande, Navnath; Nammi, Srinivas; Groundwater, Paul W; Roubin, Rebecca H; Hibbs, David E

    2013-02-01

    Twenty three dual PPARα and γ molecules of natural product origin, previously reported by our group, were further investigated for pan PPAR transactivation against PPARδ. The in vitro cell toxicity profile, as well as, in silico study of the most active molecules within this new class of pan PPAR agonists are also described. 3',5' Dimethoxy-7 hydroxyisoflavone 6, Ψ-baptigenin 7, 4' fluoro-7 hydroxyisoflavone 8, and 3' methoxy-7 hydroxyisoflavone 9 were identified as the most potent molecules studied within the set compared to the commercially available pan PPAR agonist, bezafibrate 1. These novel active molecules may thus be useful as future leads in PPAR-related disorders, including type II diabetes mellitus and metabolic syndrome. PMID:23265844

  11. Trends in Dengue Cases Imported into the United States from Pan America 2001–2012

    PubMed Central

    van Dodewaard, Caitlin A.M.; Richards, Stephanie L.

    2015-01-01

    The objective of this study was to improve risk assessments of travel on dengue (DEN) virus (DENV) distribution. We investigated the exposure risk of US citizens traveling to DEN-endemic Pan American countries. The number of DEN cases reported in 51 Pan American countries from 2001 to 2012 was compared to the population of the same countries. The number of US travelers visiting the Pan American countries was categorized by region, and travel-related DEN infections were analyzed. US residents visiting the Dominican Republic exhibited the highest traveler-related DEN incidence. Brazil showed the most DEN cases in its residents (>1 million reported cases in 2010). The number of DEN cases continues to rise as does international travel and the geographic range of potential DENV vectors. DENV risk assessments may be improved by analyzing the possible routes of entry. Underreporting remains an issue for calculating DENV transmission risk by country and region. PMID:26766913

  12. Body composition in Pan paniscus compared with Homo sapiens has implications for changes during human evolution.

    PubMed

    Zihlman, Adrienne L; Bolter, Debra R

    2015-06-16

    The human body has been shaped by natural selection during the past 4-5 million years. Fossils preserve bones and teeth but lack muscle, skin, fat, and organs. To understand the evolution of the human form, information about both soft and hard tissues of our ancestors is needed. Our closest living relatives of the genus Pan provide the best comparative model to those ancestors. Here, we present data on the body composition of 13 bonobos (Pan paniscus) measured during anatomical dissections and compare the data with Homo sapiens. These comparative data suggest that both females and males (i) increased body fat, (ii) decreased relative muscle mass, (iii) redistributed muscle mass to lower limbs, and (iv) decreased relative mass of skin during human evolution. Comparison of soft tissues between Pan and Homo provides new insights into the function and evolution of body composition. PMID:26034269

  13. Stone tool production and utilization by bonobo-chimpanzees (Pan paniscus).

    PubMed

    Roffman, Itai; Savage-Rumbaugh, Sue; Rubert-Pugh, Elizabeth; Ronen, Avraham; Nevo, Eviatar

    2012-09-01

    Using direct percussion, language-competent bonobo-chimpanzees Kanzi and Pan-Banisha produced a significantly wider variety of flint tool types than hitherto reported, and used them task-specifically to break wooden logs or to dig underground for food retrieval. For log breaking, small flakes were rotated drill-like or used as scrapers, whereas thick cortical flakes were used as axes or wedges, leaving consistent wear patterns along the glued slits, the weakest areas of the log. For digging underground, a variety of modified stone tools, as well as unmodified flint nodules, were used as shovels. Such tool production and utilization competencies reported here in Pan indicate that present-day Pan exhibits Homo-like technological competencies. PMID:22912400

  14. Stone tool production and utilization by bonobo-chimpanzees (Pan paniscus)

    PubMed Central

    Roffman, Itai; Savage-Rumbaugh, Sue; Rubert-Pugh, Elizabeth; Ronen, Avraham; Nevo, Eviatar

    2012-01-01

    Using direct percussion, language-competent bonobo-chimpanzees Kanzi and Pan-Banisha produced a significantly wider variety of flint tool types than hitherto reported, and used them task-specifically to break wooden logs or to dig underground for food retrieval. For log breaking, small flakes were rotated drill-like or used as scrapers, whereas thick cortical flakes were used as axes or wedges, leaving consistent wear patterns along the glued slits, the weakest areas of the log. For digging underground, a variety of modified stone tools, as well as unmodified flint nodules, were used as shovels. Such tool production and utilization competencies reported here in Pan indicate that present-day Pan exhibits Homo-like technological competencies. PMID:22912400

  15. Body composition in Pan paniscus compared with Homo sapiens has implications for changes during human evolution

    PubMed Central

    Zihlman, Adrienne L.; Bolter, Debra R.

    2015-01-01

    The human body has been shaped by natural selection during the past 4–5 million years. Fossils preserve bones and teeth but lack muscle, skin, fat, and organs. To understand the evolution of the human form, information about both soft and hard tissues of our ancestors is needed. Our closest living relatives of the genus Pan provide the best comparative model to those ancestors. Here, we present data on the body composition of 13 bonobos (Pan paniscus) measured during anatomical dissections and compare the data with Homo sapiens. These comparative data suggest that both females and males (i) increased body fat, (ii) decreased relative muscle mass, (iii) redistributed muscle mass to lower limbs, and (iv) decreased relative mass of skin during human evolution. Comparison of soft tissues between Pan and Homo provides new insights into the function and evolution of body composition. PMID:26034269

  16. Targeting the HER Family with Pan-HER Effectively Overcomes Resistance to Cetuximab.

    PubMed

    Iida, Mari; Bahrar, Harsh; Brand, Toni M; Pearson, Hannah E; Coan, John P; Orbuch, Rachel A; Flanigan, Bailey G; Swick, Adam D; Prabakaran, Prashanth J; Lantto, Johan; Horak, Ivan D; Kragh, Michael; Salgia, Ravi; Kimple, Randy J; Wheeler, Deric L

    2016-09-01

    Cetuximab, an antibody against the EGFR, has shown efficacy in treating head and neck squamous cell carcinoma (HNSCC), metastatic colorectal cancer, and non-small cell lung cancer (NSCLC). Despite the clinical success of cetuximab, many patients do not respond to cetuximab. Furthermore, virtually all patients who do initially respond become refractory, highlighting both intrinsic and acquired resistance to cetuximab as significant clinical problems. To understand mechanistically how cancerous cells acquire resistance, we previously developed models of acquired resistance using the H226 NSCLC and UM-SCC1 HNSCC cell lines. Cetuximab-resistant clones showed a robust upregulation and dependency on the HER family receptors EGFR, HER2, and HER3. Here, we examined pan-HER, a mixture of six antibodies targeting these receptors on cetuximab-resistant clones. In cells exhibiting acquired or intrinsic resistance to cetuximab, pan-HER treatment decreased all three receptors' protein levels and downstream activation of AKT and MAPK. This correlated with decreased cell proliferation in cetuximab-resistant clones. To determine whether pan-HER had a therapeutic benefit in vivo, we established de novo cetuximab-resistant mouse xenografts and treated resistant tumors with pan-HER. This regimen resulted in a superior growth delay of cetuximab-resistant xenografts compared with mice continued on cetuximab. Furthermore, intrinsically cetuximab-resistant HNSCC patient-derived xenograft tumors treated with pan-HER exhibited significant growth delay compared with vehicle/cetuximab controls. These results suggest that targeting multiple HER family receptors simultaneously with pan-HER is a promising treatment strategy for tumors displaying intrinsic or acquired resistance to cetuximab. Mol Cancer Ther; 15(9); 2175-86. ©2016 AACR. PMID:27422810

  17. Integration of PanDA workload management system with Titan supercomputer at OLCF

    NASA Astrophysics Data System (ADS)

    De, K.; Klimentov, A.; Oleynik, D.; Panitkin, S.; Petrosyan, A.; Schovancova, J.; Vaniachine, A.; Wenaus, T.

    2015-12-01

    The PanDA (Production and Distributed Analysis) workload management system (WMS) was developed to meet the scale and complexity of LHC distributed computing for the ATLAS experiment. While PanDA currently distributes jobs to more than 100,000 cores at well over 100 Grid sites, the future LHC data taking runs will require more resources than Grid computing can possibly provide. To alleviate these challenges, ATLAS is engaged in an ambitious program to expand the current computing model to include additional resources such as the opportunistic use of supercomputers. We will describe a project aimed at integration of PanDA WMS with Titan supercomputer at Oak Ridge Leadership Computing Facility (OLCF). The current approach utilizes a modified PanDA pilot framework for job submission to Titan's batch queues and local data management, with light-weight MPI wrappers to run single threaded workloads in parallel on Titan's multicore worker nodes. It also gives PanDA new capability to collect, in real time, information about unused worker nodes on Titan, which allows precise definition of the size and duration of jobs submitted to Titan according to available free resources. This capability significantly reduces PanDA job wait time while improving Titan's utilization efficiency. This implementation was tested with a variety of Monte-Carlo workloads on Titan and is being tested on several other supercomputing platforms. Notice: This manuscript has been authored, by employees of Brookhaven Science Associates, LLC under Contract No. DE-AC02-98CH10886 with the U.S. Department of Energy. The publisher by accepting the manuscript for publication acknowledges that the United States Government retains a non-exclusive, paid-up, irrevocable, world-wide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes.

  18. Combined Pan-RAF and MEK Inhibition Overcomes Multiple Resistance Mechanisms to Selective RAF Inhibitors.

    PubMed

    Whittaker, Steven R; Cowley, Glenn S; Wagner, Steve; Luo, Flora; Root, David E; Garraway, Levi A

    2015-12-01

    RAF and MEK inhibitors are effective in BRAF-mutant melanoma but not in BRAF-mutant colorectal cancer. To gain additional insights into this difference, we performed a genome-scale pooled shRNA enhancer screen in a BRAF-mutant, RAF inhibitor-resistant colorectal cancer cell line exposed to the selective RAF inhibitor PLX4720. We identified multiple genes along the receptor tyrosine kinase (RTK)/mitogen-activated protein kinase (MAPK) signaling axis that, when suppressed, either genetically or pharmacologically, sensitized cells to the selective RAF inhibitor through sustained inhibition of MAPK signaling. Strikingly, CRAF was a key mediator of resistance that could be overcome by the use of pan-RAF inhibitors in combination with a MEK inhibitor. Furthermore, the combination of pan-RAF and MEK inhibitors displayed strong synergy in melanoma and colorectal cancer cell lines with RAS-activating events such as RTK activation, KRAS mutation, or NF1 loss-of-function mutations. Combinations of selective RAF inhibitors, such as PLX4720 or dabrafenib, with MEK inhibitors did not incur such profound synergy, suggesting that inhibition of CRAF by pan-RAF inhibitors plays a key role in determining cellular response. Importantly, in contrast to the modest activity seen with single-agent treatment, dual pan-RAF and MEK inhibition results in the induction of apoptosis, greatly enhancing efficacy. Notably, combined pan-RAF and MEK inhibition can overcome intrinsic and acquired resistance to single-agent RAF/MEK inhibition, supporting dual pan-RAF and MEK inhibition as a novel therapeutic strategy for BRAF- and KRAS-mutant cancers. PMID:26351322

  19. Comparison of PAN and Black Carbon Levels in Mexico City: 1997 and 2003

    NASA Astrophysics Data System (ADS)

    Gaffney, J. S.; Marley, N. A.

    2004-12-01

    Peroxyacetyl nitrate (PAN) is a secondary oxidant formed by the oxidation of hydrocarbons in the presence of nitrogen dioxide. PAN is a good indicator compound for hydrocarbon reactivity that leads to ozone formation. Black carbon (BC) is formed by incomplete combustion processes such as diesel soot formation and is a good indicator of primary carbonaceous aerosols in urban areas. We used a fast-response luminol method to measure PAN and BC during the Mexico City Metropolitan Area 2003/Mexico City Megacity 2003 field study in April 2003. We compare these results with our previous PAN measurements in Mexico City during February 1997, made with a gas chromatograph-electron capture detector system. The decreased PAN levels observed in 2003 are consistent with the application of emissions controls on spark ignition gasoline-fueled vehicles, leading to lower levels of the nitrogen oxides and reactive volatile hydrocarbons needed to form PAN. Black carbon data for Mexico City in 2003, taken with a seven-channel aethalometer, are compared with data from 1997, estimated from thermal analyses as elemental carbon (EC). The comparison indicates little change in the levels of BC/EC over the six-year period. This observation is consistent with the application of minimal controls to diesel engines, the likely major source of BC in the Mexico City megacity complex during this period. The authors wish to thank the researchers at Centro Nacional de Investigación en Calidad Ambiental (CENICA), Mexico City. This work was supported by the U.S. Department of Energy, Atmospheric Science Program. We also wish to acknowledge Drs. Mario and Luisa Molina for their help in organizing and directing the Mexico City Metropolitan Area 2003 field study, during which these data were collected.

  20. Evaluation of common methods for sampling invertebrate pollinator assemblages: net sampling out-perform pan traps.

    PubMed

    Popic, Tony J; Davila, Yvonne C; Wardle, Glenda M

    2013-01-01

    Methods for sampling ecological assemblages strive to be efficient, repeatable, and representative. Unknowingly, common methods may be limited in terms of revealing species function and so of less value for comparative studies. The global decline in pollination services has stimulated surveys of flower-visiting invertebrates, using pan traps and net sampling. We explore the relative merits of these two methods in terms of species discovery, quantifying abundance, function, and composition, and responses of species to changing floral resources. Using a spatially-nested design we sampled across a 5000 km(2) area of arid grasslands, including 432 hours of net sampling and 1296 pan trap-days, between June 2010 and July 2011. Net sampling yielded 22% more species and 30% higher abundance than pan traps, and better reflected the spatio-temporal variation of floral resources. Species composition differed significantly between methods; from 436 total species, 25% were sampled by both methods, 50% only by nets, and the remaining 25% only by pans. Apart from being less comprehensive, if pan traps do not sample flower-visitors, the link to pollination is questionable. By contrast, net sampling functionally linked species to pollination through behavioural observations of flower-visitation interaction frequency. Netted specimens are also necessary for evidence of pollen transport. Benefits of net-based sampling outweighed minor differences in overall sampling effort. As pan traps and net sampling methods are not equivalent for sampling invertebrate-flower interactions, we recommend net sampling of invertebrate pollinator assemblages, especially if datasets are intended to document declines in pollination and guide measures to retain this important ecosystem service. PMID:23799127

  1. Molecular principles behind pyrazinamide resistance due to mutations in panD gene in Mycobacterium tuberculosis.

    PubMed

    Pandey, Bharati; Grover, Sonam; Tyagi, Chetna; Goyal, Sukriti; Jamal, Salma; Singh, Aditi; Kaur, Jagdeep; Grover, Abhinav

    2016-04-25

    The latest resurrection of drug resistance poses serious threat to the treatment and control of the disease. Mutations have been detected in panD gene in the Mycobacterium tuberculosis (Mtb) strains. Mutation of histidine to arginine at residue 21 (H21R) and isoleucine to valine at residue 29 (I49V) in the non-active site of panD gene has led to PZA resistance. This study will help in reconnoitering the mechanism of pyrazinamide (PZA) resistance caused due to double mutation identified in the panD gene of M. tuberculosis clinical isolates. It is known that panD gene encodes aspartate decarboxylase essential for β-alanine synthesis that makes it a potential therapeutic drug target for tuberculosis treatment. The knowledge about the molecular mechanism conferring drug resistance in M. tuberculosis is scarce, which is a significant challenge in designing successful therapeutic drug. In this study, structural and dynamic repercussions of H21R-I49V double mutation in panD complexed with PZA have been corroborated through docking and molecular dynamics based simulation. The double mutant (DM) shows low docking score and thus, low binding affinity for PZA as compared to the native protein. It was observed that the mutant protein exhibits more structural fluctuation at the ligand binding site in comparison to the native type. Furthermore, the flexibility and compactness analyses indicate that the double mutation influence interaction of PZA with the protein. The hydrogen-bond interaction patterns further supported our results. The covariance and PCA analysis elucidated that the double mutation affects the collective motion of residues in phase space. The results have been presented with an explanation for the induced drug resistance conferred by the H21R-I49V double mutation in panD gene and gain valuable insight to facilitate the advent of efficient therapeutics for combating resistance against PZA. PMID:26784657

  2. A Reconsideration of Pan African Orogenic Cycle in the Anti-Atlas Mountains, Morocco

    NASA Astrophysics Data System (ADS)

    Hefferan, K. P.; Soulaimani, A.; Samson, S. D.; Admou, H.; Inglis, J.; Saquaque, A.; Heywood, N. C.

    2013-12-01

    The term 'Pan African' orogeny was first proposed in 1964 for a tectonothermal event in Africa ~ 500+/- 50 Ma. Over the past 50 years, the Pan African orogeny has been extended to as much as ~1050-450 Ma and recognized in other Gondwanan continents where regional names such as Brasiliano (South America), Adelaidean (Australian) and Bearmore (Antarctica) have been applied. The Pan African time span of ~500 million years is much longer than any Phanerozoic orogeny. However, it does correlate with time ranges of well defined Phanerozoic orogenic cycles such as the Appalachian cycle, extending from ~1,100 to 250 Ma, and the Cordilleran cycle of ~350 Ma to the present. A significant difference of course is that the Appalachian orogenic cycle has long been recognized as consisting of separate Grenville, Taconic, Acadian and Alleghenian orogenies. Similarly, the Mesozoic-Cenozoic Cordilleran orogenic cycle consists of distinct Antler, Sonoma, Nevadan, Sevier, Laramide and ongoing Cascadian-Andean orogenies. Until recently, the absence of precise geochronology in West Africa has prevented a more refined analysis of individual orogenic events within the Pan-African orogenic cycle. Since 2000, precision geochronologic dating by various researchers in the Anti-Atlas Mountains, Morocco, has provided critical data by which it is now appropriate to designate a Pan African orogenic cycle consisting of three separate orogenic events. We herein propose the following distinct orogenic events in the Anti-Atlas Mountains of Morocco: Iriri-Tichibanine orogeny (750-700 Ma), Bou Azzer orogeny (660-640 Ma) and the WACadomian orogeny (620-580 Ma). Generalized tectonic map of the Anti-Atlas Mountain inliers (Adapted from Ennih and Liégeois, 2008). Geodynamic model of the Pan African orogenic cycle in the Anti-Atlas Mountains. Modified from Walsh et al. (2012) and incorporating ideas from Thomas et al. (2002) and El Hadi et al. (2012).

  3. Token transfers among great apes (Gorilla gorilla, Pongo pygmaeus, Pan paniscus, and Pan troglodytes): species differences, gestural requests, and reciprocal exchange.

    PubMed

    Pelé, Marie; Dufour, Valérie; Thierry, Bernard; Call, Josep

    2009-11-01

    Great apes appear to be the nonhuman primates most capable of recognizing trading opportunities and engaging in transfers of commodities with conspecifics. Spontaneous exchange of goods between them has not yet been reported. We tested gorillas (Gorilla gorilla), orangutans (Pongo pygmaeus), bonobos (Pan paniscus), and chimpanzees (Pan troglodytes) in a token-exchange task involving two conspecifics and a human experimenter. Tested in pairs, subjects had to exchange tokens with a partner to obtain food from the experimenter. We observed 4, 5, 264, and 328 transfers of tokens in gorillas, chimpanzees, orangutans, and bonobos, respectively. Most gifts were indirect in gorillas, chimpanzees, and bonobos, whereas most were direct in orangutans. The analysis showed no evidence of calculated reciprocity in interactions. A main finding of the study was the high rate of repeated gifts and begging gestures recorded in orangutans. This raises the question of the meaning of pointing in great apes and their ability to understand the communicative intent of others. PMID:19929106

  4. Performance in a tool-using task by common chimpanzees (Pan troglodytes), bonobos (Pan paniscus), an orangutan (Pongo pygmaeus), and capuchin monkeys (Cebus apella).

    PubMed

    Visalberghi, E; Fragaszy, D M; Savage-Rumbaugh, S

    1995-03-01

    Performance by individual animals of three species of great apes (Pan troglodytes, Pan paniscus, and Pongo pygmaeus) and capuchin monkeys (Cebus apella) was assessed by presenting a food treat inside a clear tube. The subjects readily used a straight stick to obtain the food. When sticks were bundled together, the apes immediately unwrapped the bundle to obtain an individual stick, whereas capuchins attempted to insert the bundled sticks. When a misshapen stick was provided, apes, but not capuchins, showed an improvement in terms of modifying the misshapen stick before insertion. Our results indicate that all these species can solve these tasks. However, only the performance of apes is consistent with emerging comprehension of the causal relations required for the avoidance of errors in the more complex tasks. PMID:7705062

  5. The First Pan-Starrs Medium Deep Field Variable Star Catalog

    NASA Astrophysics Data System (ADS)

    Flewelling, Heather

    2013-01-01

    We present the first Pan-Starrs 1 Medium Deep Field Variable Star Catalog (PS1-MDF-VSC). The Pan-Starrs 1 (PS1) telescope is a 1.8 meter survey telescope with a 1.4 Gigapixel camera, and is located in Haleakala, Hawaii. The Medium Deep survey, which consists of 10 fields located uniformly across the sky, totalling 70 square degrees, is observed each night, in 2-3 filters per field, with 8 exposures per filter. We have located and classified several hundred periodic variable stars within the Medium Deep fields, and we present the first catalog listing the properties of these variable stars.

  6. 76 FR 362 - Pan American Energy, LLC ; Supplemental Notice That Initial Market-Based Rate Filing Includes...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-01-04

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF ENERGY Federal Energy Regulatory Commission Pan American Energy, LLC ; Supplemental Notice That Initial Market-Based... supplemental notice in the above-referenced proceeding of Pan American Energy, LLC's application for...

  7. Curbing Early-Career Teacher Attrition: A Pan-Canadian Document Analysis of Teacher Induction and Mentorship Programs

    ERIC Educational Resources Information Center

    Kutsyuruba, Benjamin; Tregunna, Leigha

    2014-01-01

    Over the past two decades, the phenomenon of teachers abandoning the profession has been noted internationally, and has increasingly caught the attention of policy makers and educational leaders. Despite this awareness, no pan-Canadian statistics or comprehensive reviews are available. This paper reports on the exploratory, pan-Canadian document…

  8. 40 CFR 428.90 - Applicability; description of the pan, dry digestion, and mechanical reclaimed rubber subcategory.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ..., dry digestion, and mechanical reclaimed rubber subcategory. 428.90 Section 428.90 Protection of... POINT SOURCE CATEGORY Pan, Dry Digestion, and Mechanical Reclaimed Rubber Subcategory § 428.90 Applicability; description of the pan, dry digestion, and mechanical reclaimed rubber subcategory....

  9. 40 CFR 428.90 - Applicability; description of the pan, dry digestion, and mechanical reclaimed rubber subcategory.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ..., dry digestion, and mechanical reclaimed rubber subcategory. 428.90 Section 428.90 Protection of... MANUFACTURING POINT SOURCE CATEGORY Pan, Dry Digestion, and Mechanical Reclaimed Rubber Subcategory § 428.90 Applicability; description of the pan, dry digestion, and mechanical reclaimed rubber subcategory....

  10. 40 CFR 428.90 - Applicability; description of the pan, dry digestion, and mechanical reclaimed rubber subcategory.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ..., dry digestion, and mechanical reclaimed rubber subcategory. 428.90 Section 428.90 Protection of... POINT SOURCE CATEGORY Pan, Dry Digestion, and Mechanical Reclaimed Rubber Subcategory § 428.90 Applicability; description of the pan, dry digestion, and mechanical reclaimed rubber subcategory....

  11. 40 CFR 428.90 - Applicability; description of the pan, dry digestion, and mechanical reclaimed rubber subcategory.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ..., dry digestion, and mechanical reclaimed rubber subcategory. 428.90 Section 428.90 Protection of... MANUFACTURING POINT SOURCE CATEGORY Pan, Dry Digestion, and Mechanical Reclaimed Rubber Subcategory § 428.90 Applicability; description of the pan, dry digestion, and mechanical reclaimed rubber subcategory....

  12. 40 CFR 428.90 - Applicability; description of the pan, dry digestion, and mechanical reclaimed rubber subcategory.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ..., dry digestion, and mechanical reclaimed rubber subcategory. 428.90 Section 428.90 Protection of... MANUFACTURING POINT SOURCE CATEGORY Pan, Dry Digestion, and Mechanical Reclaimed Rubber Subcategory § 428.90 Applicability; description of the pan, dry digestion, and mechanical reclaimed rubber subcategory....

  13. TES observations of the interannual variability of PAN over Northern Eurasia and the relationship to springtime fires

    NASA Astrophysics Data System (ADS)

    Zhu, Liye; Fischer, Emily V.; Payne, Vivienne H.; Worden, John R.; Jiang, Zhe

    2015-09-01

    Peroxyacetyl nitrate (PAN) plays an important role in atmospheric chemistry through its impact on remote oxidant and nitrogen budgets. PAN is formed rapidly in boreal fire plumes through the oxidation of short-lived volatile organic compounds in the presence of nitrogen oxide radicals. Here we present new satellite observations of PAN from the Tropospheric Emission Spectrometer (TES) over northern Eurasia for April 2006-2010. We observe large interannual variability in TES PAN observations, and we show that fires are one source of this variability using (1) Moderate Resolution Imaging Spectroradiometer Mean Fire Radiative Power observations and (2) Hybrid Single-Particle Lagrangian Integrated Trajectory backward trajectories. We also show that cold springtime temperatures and enhanced vertical mixing in the lower free troposphere over northeastern Eurasia likely played a role in the detection of PAN from TES in April 2006 in this region.

  14. Preparation of thin film nanofibrous composite NF membrane based on EDC/NHS modified PAN-AA nanofibrous substrate

    NASA Astrophysics Data System (ADS)

    Yang, Y.; Wang, X.; Hsiao, B. S.

    2016-07-01

    A novel kind of thin-film nanofibrous composite (TFNC) nanofiltration (NF) membranes consisting of a polyamide (PA) barrier layer were successfully fabricated by interfacial polymerization (IFP) based on electrospun double-layer nanofibrous substrates, which have an ultrathin poly (acrylonitrile-co-acrylic acid) (PAN-AA) nanofibrous layer as top layer and a thicker polyacrylonitrile (PAN) nanofiber layer as bottom porous support layer. Immersing PAN/PAN-AA nanofibrous substrates into 1-ethyl-(3-3-dimethylaminopropyl) carbodiimide hydrochloride/N-hydroxysuccinimide (EDC/NHS) aqueous solution and piperazine (PIP) aqueous solution (0.20 wt%) sequentially for a period of time, the carboxyl groups on PAN-AA nanofibers were activated by carbodiimide and then reacted with the amide groups. The as prepared composite membrane has an integrated structure with high rejection rate (98.0%); high permeate flux (40.4 L/m2h) for MgSO4 aqueous solution (2 g/L).

  15. Regional and hemispheric influences on measured spring peroxyacetyl nitrate (PAN) mixing ratios at the Auchencorth UK EMEP supersite

    NASA Astrophysics Data System (ADS)

    Malley, Christopher S.; Cape, J. Neil; Jones, Matthew R.; Leeson, Sarah R.; Coyle, Mhairi; Braban, Christine F.; Heal, Mathew R.; Twigg, Marsailidh M.

    2016-06-01

    This work presents 15-min averaged measurements of peroxyacetyl nitrate (PAN) obtained during spring 2014 (24/04/2014 - 06/05/2014) at the Auchencorth UK EMEP supersite (southeast Scotland). The aim of this analysis was to investigate the conditions producing the distribution of PAN mixing ratios at the supersite in spring 2014. Air mass back trajectories showed the majority of air masses to have spent substantial time over the UK, continental Europe or Scandinavia prior to arrival at Auchencorth. The median and 95th percentile PAN mixing ratios observed were 0.46 ppb and 1.03 ppb, respectively. The median mixing ratio was elevated compared with previous PAN measurements during springtime (April-May) in southeast Scotland (corresponding median mixing ratios April-May 1994-1998: 0.1-0.3 ppb), which is hypothesised to be due to conditions conducive to regional (European) photochemical PAN production. Additionally, PAN mixing ratios during regionally influenced conditions (0.4-1.5 ppb) were substantially more elevated from hemispheric background mixing ratios (0.4-0.6 ppb) than for ozone (O3, regional: 10-45 ppb, hemispheric: 30-40 ppb). PAN and O3 both impact upon vegetation and human health and it is necessary to understand the extent to which hemispheric and regional processes contribute to their abundances in different locations. Regional processes can both increase and decrease PAN and O3 mixing ratios compared to imported hemispheric background mixing ratios. This study concludes that during the measurement period in spring 2014 at the Auchencorth supersite, regional PAN and O3 modifying processes enhanced PAN mixing ratios more than for O3.

  16. Fresh Insights into the Sources and Distribution of Peroxyacetyl Nitrate (PAN) from New In Situ and Satellite Observations

    NASA Astrophysics Data System (ADS)

    Fischer, E. V.; Payne, V.; Zaragoza, J.; Zhu, L.; Jiang, Z.; Worden, J.; Sive, B. C.; Zhou, Y.; Alvarado, M. J.; Abeleira, A.; Callahan, S. L.; Farmer, D. K.

    2014-12-01

    PAN (peroxyacetyl nitrate, CH3C(O)OONO2) is only one of the organic nitrogen compounds produced when hydrocarbons are oxidized in the presence of nitrogen oxide radicals (NOx = NO + NO2), but it is the most important atmospheric NOx reservoir and a critical pathway by which NOx reaches the remote troposphere to impact oxidant distributions and remote nitrogen deposition. We present the analysis of new in situ and satellite observations to highlight previously unobserved features of regional-to-global PAN distributions. Our latest in situ data were collected as part of the Front Range Air Pollution and Photochemistry Éxperiment (FRAPPÉ), which took place in the Colorado Front Range during July and August 2014. This data set serves as a case study of PAN formation where significant oil and gas production intersects a major urban-suburban region. Preliminary data, analyzed in conjunction with concurrent observations of other trace species, show extremely elevated PAN and other organic nitrogen compounds in plumes with strong oil and gas source signatures. These plumes have been observed at both suburban and remote (Rocky Mountain National Park) measurement sites. In addition, new PAN retrievals from the Tropospheric Emission Spectrometer (TES), flying on the NASA Aura satellite, can provide a more global picture of PAN. We present TES retrievals of PAN from the Northern Hemisphere over the ten-year lifetime of the Aura mission. The TES PAN dataset offers unprecedented observations of the inter-annual variability of PAN, the transpacific transport of reactive nitrogen species, and the role of biomass burning in the generation of extreme PAN abundances.

  17. Two Is the Beginning of the End: "Peter Pan" and the Doctrine of Reminiscence

    ERIC Educational Resources Information Center

    Hudson, Glenda A.

    2006-01-01

    This article considers J.M. Barrie's satirical treatment of the Platonic doctrine of reminiscence in "Peter Pan," and how Barrie's work both honors and undercuts it. It will first analyze the Platonic notion of the doctrine of reminiscence in Wordsworth's "Ode: Intimations of Immortality from Recollections of Early Childhood" (1807). It will then…

  18. Pan-neuronal maturation but not neuronal subtype differentiation of adult neural stem cells is mechanosensitive

    PubMed Central

    Keung, Albert J.; Dong, Meimei; Schaffer, David V.; Kumar, Sanjay

    2013-01-01

    Most past studies of the biophysical regulation of stem cell differentiation have focused on initial lineage commitment or proximal differentiation events. It would be valuable to understand whether biophysical inputs also influence distal endpoints more closely associated with physiological function, such as subtype specification in neuronal differentiation. To explore this question, we cultured adult neural stem cells (NSCs) on variable stiffness ECMs under conditions that promote neuronal fate commitment for extended time periods to allow neuronal subtype differentiation. We find that ECM stiffness does not modulate the expression of NeuroD1 and TrkA/B/C or the percentages of pan-neuronal, GABAergic, or glutamatergic neuronal subtypes. Interestingly, however, an ECM stiffness of 700 Pa maximizes expression of pan-neuronal markers. These results suggest that a wide range of stiffnesses fully permit pan-neuronal NSC differentiation, that an intermediate stiffness optimizes expression of pan-neuronal genes, and that stiffness does not impact commitment to particular neuronal subtypes. PMID:23660869

  19. Pan American Airways/Naval Air Transport Service/destroyer base site at the ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Pan American Airways/Naval Air Transport Service/destroyer base site at the east side showing walkway and building foundation. View facing west-northwest. - U.S. Naval Base, Pearl Harbor, Pearl City Peninsula, Pearl City, Honolulu County, HI

  20. Occupational Task Profiles: Canadian Literacy and Essential Skills Workforce. A Pan-Canadian Snapshot

    ERIC Educational Resources Information Center

    Harwood, Chris

    2012-01-01

    This "Pan-Canadian Snapshot" explores the competencies needed to work with adults participating in Literacy and/or Essential Skills (L/ES) programs in Canada. The purpose of the "Snapshot" is to: (1) lay a foundation from which to explore the topic of professionalism; (2) identify the types of supports that the L/ES workforce…

  1. Civic Responsibility and Human Rights Education: A Pan-Educational Alliance for Social Justice

    ERIC Educational Resources Information Center

    Osanloo, Azadeh F.

    2009-01-01

    Educating global citizens to have knowledge of world political and economic systems and conditions is imperative as the notion of the "citizen" is constantly evolving. This type of civic education needs to involve critical thinking skills that are pan-educational and allow for cross-cultural discussion that span all public spheres and encourage…

  2. Developing a Competency-Based Pan-European Accreditation Framework for Health Promotion

    ERIC Educational Resources Information Center

    Battel-Kirk, Barbara; Van der Zanden, Gerard; Schipperen, Marielle; Contu, Paolo; Gallardo, Carmen; Martinez, Ana; Garcia de Sola, Silvia; Sotgiu, Alessandra; Zaagsma, Miriam; Barry, Margaret M.

    2012-01-01

    Background: The CompHP Pan-European Accreditation Framework for Health Promotion was developed as part of the CompHP Project that aimed to develop competency-based standards and an accreditation system for health promotion practice, education, and training in Europe. Method: A phased, multiple-method approach was employed to facilitate consensus…

  3. Three pairs of bollards of Pan American Airways/Naval Air Transport ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Three pairs of bollards of Pan American Airways/Naval Air Transport Service/destroyer base site. (The third pair is visible beyond the trees). View facing south-southeast. - U.S. Naval Base, Pearl Harbor, Pearl City Peninsula, Pearl City, Honolulu County, HI

  4. The Steel Band Game Plan: Strategies for Starting, Building, and Maintaining Your Pan Program

    ERIC Educational Resources Information Center

    Tanner, Chris

    2006-01-01

    This book is the first comprehensive resource devoted to steel band pedagogy, it is a must-have for anyone involved in the steel band idiom today. Written primarily for educators, the book addresses a wide variety of topics, including instrumentation, personnel, basic pan technique, repertoire, and rehearsal strategies. This informative text…

  5. Intentionality as Measured in the Persistence and Elaboration of Communication by Chimpanzees (Pan troglodytes)

    ERIC Educational Resources Information Center

    Leavens, David A.; Russell, Jamie L.; Hopkins, William D.

    2005-01-01

    In human infancy, 2 criteria for intentional communication are (a) persistence in and (b) elaboration of communication when initial attempts to communicate fail. Twenty-nine chimpanzees (Pan troglodytes) were presented with both desirable (a banana) and undesirable food (commercial primate chow). Three conditions were administered: (a) the banana…

  6. High-resolution genetic mapping of maize pan-genome sequence anchors.

    PubMed

    Lu, Fei; Romay, Maria C; Glaubitz, Jeffrey C; Bradbury, Peter J; Elshire, Robert J; Wang, Tianyu; Li, Yu; Li, Yongxiang; Semagn, Kassa; Zhang, Xuecai; Hernandez, Alvaro G; Mikel, Mark A; Soifer, Ilya; Barad, Omer; Buckler, Edward S

    2015-01-01

    In addition to single-nucleotide polymorphisms, structural variation is abundant in many plant genomes. The structural variation across a species can be represented by a 'pan-genome', which is essential to fully understand the genetic control of phenotypes. However, the pan-genome's complexity hinders its accurate assembly via sequence alignment. Here we demonstrate an approach to facilitate pan-genome construction in maize. By performing 18 trillion association tests we map 26 million tags generated by reduced representation sequencing of 14,129 maize inbred lines. Using machine-learning models we select 4.4 million accurately mapped tags as sequence anchors, 1.1 million of which are presence/absence variations. Structural variations exhibit enriched association with phenotypic traits, indicating that it is a significant source of adaptive variation in maize. The ability to efficiently map ultrahigh-density pan-genome sequence anchors enables fine characterization of structural variation and will advance both genetic research and breeding in many crops. PMID:25881062

  7. Biomonitoring of peroxyacetyl nitrate (PAN) and ozone with indicator plant set

    SciTech Connect

    Sun, E.J.; Cheng, M.L.

    1997-12-31

    Studies on the responses of several indicator plants to peroxyacetyl nitrate (PAN) and ozone during the past four years in the exposure chambers and in the greenhouse in Taiwan showed that some indicator plant sets were suitable for biomonitoring these two pollutants. Four plant species including Sword-leaf lettuce, black nightshade (Solanum nigrum), quickweed (Galinsoga parviflora) and Double-fortune tomato were recommended for use in together to monitor both PAN and ozone simultaneously. Some of the plants were from tissue culture to increase the genetic uniformity. There was no sensitivity difference between the tissue culture plantlets and the seed-grown plants. The specific symptoms of bronzing, silvering and glazing as expressed on lettuce, black nightshade or quickweed can be used as indication if PAN concentrations over 4--5 ppbv in Taiwan. Whereas the fleck and stippling on tomato leaves indicated that ozone was at least over 50 ppbv. Totally about 30 indicator plant stations had been set up in four major urban areas (Taipei, Taichung, Chayi, and Kaohsiung) to comprehensively monitor the occurrence of PAN and ozone in the atmosphere. A standardized procedure for cultivating the plants was established. As the cost is low, the operation is easy, and no electric power is needed, the application of this technique is very promising, especially in the developing countries.

  8. Toward a systematic understanding of cancers: a survey of the pan-cancer study

    PubMed Central

    Liu, Zhaoqi; Zhang, Shihua

    2014-01-01

    Studies on molecular aberrations of cancer patients have increased unprecedentedly in scale and accessibility, allowing large-scale integrative cross-cancer analysis. Pan-cancer study is becoming a valuable paradigm for cancer genomics. Here, we review recent advances in this field and highlight the potential challenges and directions especially from the computational angle. PMID:25071824

  9. Single-Pan Balances, Buoyancy, and Gravity or "A Mass of Confusion."

    ERIC Educational Resources Information Center

    Battino, Rubin; Williamson, Arthur G.

    1984-01-01

    Discusses problems and pitfalls of working with single-pan balances and methods used to advertise their accuracy. Investigated manufacturers knowledge of buoyancy effects, relating provisions and recommendations made by various companies. Provides a routine for intercalibration of weight using dummy weights of approximately known mass. (JM)

  10. Seatbelt submarining injury and its prevention countermeasures: How a cantilever seat pan structure exacerbate submarining.

    PubMed

    Thorbole, Chandrashekhar K

    2015-01-01

    The purpose of this study and a case report was to demonstrate seat belt webbing induced injury due to seatbelt submarining during the frontal motor vehicle crash. Submarining is an undesired phenomenon during a frontal crash scenario and is dependent on design features of the seat pan and seatbelt system. The lack of adequate anti-submarining features at any seating position with three-point restraint can cause abdominal solid and hollow organ injuries. This paper reports a case of submarining and factors that exacerbated this phenomenon leading to critical occupant abdominal injury. This case report and the following injury causation analysis demonstrate the shortcomings of a cantilever seat pan design in context to the occupant safety. The inadequate seat pan anti-submarining feature in association with lack of seatbelt load-limiter and Pretensioner reduces the level of occupant protection offered by the seat belt system in the rear seat. This case report shows the dangers of cantilever seat pan design and its association with increased risk of submarining causing severe abdominal injuries. PMID:26985421

  11. Spatial Construction Skills of Chimpanzees ("Pan Troglodytes") and Young Human Children ("Homo Sapiens Sapiens")

    ERIC Educational Resources Information Center

    Poti, Patrizia; Hayashi, Misato; Matsuzawa, Tetsuro

    2009-01-01

    Spatial construction tasks are basic tests of visual-spatial processing. Two studies have assessed spatial construction skills in chimpanzees (Pan troglodytes) and young children (Homo sapiens sapiens) with a block modelling task. Study 1a subjects were three young chimpanzees and five adult chimpanzees. Study 1b subjects were 30 human children…

  12. "Manana Is Soon Enough for Me": Latin America through Tin Pan Alley's Prism.

    ERIC Educational Resources Information Center

    Aiex, Nola Kortner

    In order to examine the vision of Latin America transmitted to the American public in Tin Pan Alley's popular songs in the first half of the twentieth century, a study analyzed nearly 50 songs. The songs were grouped into five categories: (1) songs which describe Latin locales; (2) songs which are constructed around a Latin woman's name; (3) songs…

  13. Seatbelt submarining injury and its prevention countermeasures: How a cantilever seat pan structure exacerbate submarining

    PubMed Central

    Thorbole, Chandrashekhar K.

    2015-01-01

    The purpose of this study and a case report was to demonstrate seat belt webbing induced injury due to seatbelt submarining during the frontal motor vehicle crash. Submarining is an undesired phenomenon during a frontal crash scenario and is dependent on design features of the seat pan and seatbelt system. The lack of adequate anti-submarining features at any seating position with three-point restraint can cause abdominal solid and hollow organ injuries. This paper reports a case of submarining and factors that exacerbated this phenomenon leading to critical occupant abdominal injury. This case report and the following injury causation analysis demonstrate the shortcomings of a cantilever seat pan design in context to the occupant safety. The inadequate seat pan anti-submarining feature in association with lack of seatbelt load-limiter and Pretensioner reduces the level of occupant protection offered by the seat belt system in the rear seat. This case report shows the dangers of cantilever seat pan design and its association with increased risk of submarining causing severe abdominal injuries. PMID:26985421

  14. Black Americans, Africa and History: A Reassessment of the Pan-African and Identity Paradigms.

    ERIC Educational Resources Information Center

    Adeleke, Tunde

    1998-01-01

    Examines the paradigm of Pan-Africanism and the identity construct in the historic and cultural contexts of blacks outside of Africa, critiquing theories on the African identity construct. Suggests that black American identity is too complex for this simplification and must be considered within the context of world acculturation. Contains 34…

  15. PEROXYACETYL NITRATE (PAN) IN THE UNPOLLUTED ATMOSPHERE: AN IMPORTANT RESERVOIR FOR NITROGEN OXIDES

    EPA Science Inventory

    Based on the measured atmospheric distributions of ethane and propane (at midlatitudes in the northern hemisphere) and a simplified mechanism for their oxidation, it is predicted that acetaldehyde, acetone, and PAN are ubiquitous components of the troposphere and the lower strato...

  16. Next Generation PanDA Pilot for ATLAS and Other Experiments

    NASA Astrophysics Data System (ADS)

    Nilsson, P.; Barreiro Megino, F.; Caballero Bejar, J.; De, K.; Hover, J.; Love, P.; Maeno, T.; Medrano Llamas, R.; Walker, R.; Wenaus, T.; Atlas Collaboration

    2014-06-01

    The Production and Distributed Analysis system (PanDA) has been in use in the ATLAS Experiment since 2005. It uses a sophisticated pilot system to execute submitted jobs on the worker nodes. While originally designed for ATLAS, the PanDA Pilot has recently been refactored to facilitate use outside of ATLAS. Experiments are now handled as plug-ins such that a new PanDA Pilot user only has to implement a set of prototyped methods in the plug-in classes, and provide a script that configures and runs the experiment-specific payload. We will give an overview of the Next Generation PanDA Pilot system and will present major features and recent improvements including live user payload debugging, data access via the Federated XRootD system, stage-out to alternative storage elements, support for the new ATLAS DDM system (Rucio), and an improved integration with glExec, as well as a description of the experiment-specific plug-in classes. The performance of the pilot system in processing LHC data on the OSG, LCG and Nordugrid infrastructures used by ATLAS will also be presented. We will describe plans for future development on the time scale of the next few years.

  17. Demonstrating a Lack of Reactivity Using a Teflon-Coated Pan.

    ERIC Educational Resources Information Center

    Richmond, Thomas G.

    1995-01-01

    Illustrates the chemical resistance of polytetrafluoroethene to mineral acids using an ordinary Teflon-coated frying pan. The demonstration can also be used to lead to a discussion of the long lifetimes of fluorocarbons and chlorofluorocarbons in the atmosphere and their roles in the breakdown of the ozone layer. (AIM)

  18. Discovering Africa through Internet-Based Geographic Information Systems: A Pan-African Summit Simulation

    ERIC Educational Resources Information Center

    Milson, Andrew J.; Gilbert, Kathleen M.; Earle, Brian D.

    2007-01-01

    In the United States, people get very little news about Africa, and what news they do get is about war or famine, with little historical information or context. In this article, the authors describe how they developed and implemented a Pan-African Summit simulation project in order to give their approximately 100, 9th-grade students (in five World…

  19. The Pan African E-Network Project: A New Learning Culture

    ERIC Educational Resources Information Center

    Suniti, Nundoo-Ghoorah; Tara, Joyejob

    2012-01-01

    This paper sets out to explore the paradigm shift in learning culture brought about by the advent of online learning in the mostly print-based ODL system at the Mauritius College of the Air (MCA). It delves into the perceptions of learners and MCA staff involved in a range of undergraduate to Master's programmes forming part of the Pan African…

  20. Measurement of Peroxyacetyl Nitrate (PAN), Peroxypropionyl Nitrate (PPN) and Peroxymethacryloyl Nitrate (MPAN) during TRACE-P

    NASA Technical Reports Server (NTRS)

    Flocke, Frank; Weinheimer, Andrew J.

    2003-01-01

    In Fall 2000, the PANs gas chromatograph (GC) was improved and prepared for installation on the NASA P-3. A number of experiments were conducted in conjunction with the NCAR NO,, instrument (B. Ridley) to settle some of the fine details of the output of the calibration system for each instrument. In addition, the sampling frequency was improved.

  1. Communication Apprehension and the Hispanic Public Speaking Student at the University of Texas--Pan American.

    ERIC Educational Resources Information Center

    Courtney, Jan; And Others

    This pilot study examined the communication apprehension (CA) in the student public speaking population, specifically the high risk Mexican American students, at the University of Texas, Pan American. The study also measured the effectiveness of the beginning speech class and the optional speech lab on CA and grade performance. Both high and low…

  2. EFFECT OF EXPOSURE TO PAN AND OZONE ON SUSCEPTIBILITY TO CHRONIC BACTERIAL INFECTION

    EPA Science Inventory

    The effects of peroxyacetyl nitrate (PAN) and ozone (O3) on susceptibility of mice and guinea pigs to chronic and acute respiratory infections were studied. The agent used for the acute infectious disease was Streptococcus sp. whereas Mycobacterium tuberculosis served as the agen...

  3. Using an Electric Single Pan Analytical Balance. Module 18. Vocational Education Training in Environmental Health Sciences.

    ERIC Educational Resources Information Center

    Consumer Dynamics Inc., Rockville, MD.

    This module, one of 25 on vocational education training for careers in environmental health occupations, contains self-instructional materials on using an electric single pan analytical balance. Following guidelines for students and instructors and an introduction that explains what the student will learn are three lessons: (1) identifying and…

  4. Discovery of CX-6258. A Potent, Selective, and Orally Efficacious pan-Pim Kinases Inhibitor.

    PubMed

    Haddach, Mustapha; Michaux, Jerome; Schwaebe, Michael K; Pierre, Fabrice; O'Brien, Sean E; Borsan, Cosmin; Tran, Joe; Raffaele, Nicholas; Ravula, Suchitra; Drygin, Denis; Siddiqui-Jain, Adam; Darjania, Levan; Stansfield, Ryan; Proffitt, Chris; Macalino, Diwata; Streiner, Nicole; Bliesath, Joshua; Omori, May; Whitten, Jeffrey P; Anderes, Kenna; Rice, William G; Ryckman, David M

    2012-02-01

    Structure-activity relationship analysis in a series of 3-(5-((2-oxoindolin-3-ylidene)methyl)furan-2-yl)amides identified compound 13, a pan-Pim kinases inhibitor with excellent biochemical potency and kinase selectivity. Compound 13 exhibited in vitro synergy with chemotherapeutics and robust in vivo efficacy in two Pim kinases driven tumor models. PMID:24900437

  5. ON THE THEORY RELATING CHANGES IN AREA-AVERAGE AND PAN EVAPORATION

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Theory relating changes in the area-average evaporation from a landscape with changes in the evaporation from pans or open water within the landscape is developed. Such changes can arise in two ways, by Type (a) processes related to large-scale changes in atmospheric concentrations and circulation t...

  6. Two Causes of Underachievement--The Scapegoat Phenomenon and the Peter Pan Syndrome. Part II.

    ERIC Educational Resources Information Center

    Grau, Phyllis Nelson

    1986-01-01

    Two profiles of underachievement are described: the Peter Pan Syndrome, characterized by irresponsibility, anxiety, loneliness, sex role conflict, and narcissism, and the scapegoating phenomenon, in which children acquire negative self-images from victimization experiences. Prognoses and recommendations for each are offered. (Author/CL)

  7. The Pan-STARRS data server and integrated data query tool

    NASA Astrophysics Data System (ADS)

    Guo, Jhen-Kuei; Chen, Wen-Ping; Lin, Chien-Cheng; Chen, Ying-Tung; Lin, Hsing-Wen

    2013-06-01

    The Pan-STARRS project is operated by an international consortium. Located in Haleakala, Hawaii, the Pan-STARRS telescope system patrols the entire visible sky several times a month, with an aim to identify and characterize varying celestial objects of phenomena or in brightness (supernovae, novae, variable stars, etc) or in position (comets, asteroids, near-earth objects, X-planet etc.) PS1 science mission has started officially from May, 2010 and expects to end in the end of 2013. As of early 2012, every patch of sky observable from Hawaii has been observed in at least 5 bands (g', r', i', z', y') for 5 to 40 epochs. We have set up a data depository at NCU to serve the users in Taiwan. The massive amounts of Pan-STARRS data are downloaded via Internet from the Institute for Astronomy, University of Hawaii whenever new observations are obtained and processed. So far we have stored a total of 200 TB worth of data. In addition to star/galaxy catalogs, a postage stamp server provides access to FITS images. The Pan-STARRS Published Science Products Subsystem (PSPS) has recently passed its operational readiness, that provides users to query individual PS1 measurements. Here we present the data query tool to interface with the PS1 catalogs and postage stamp images, together with other complementary databases such as 2MASS and other data at IRSA (NASA/IPAC Infrared Science Archive).

  8. Multi-Sensor Fusion of Landsat 8 Thermal Infrared (TIR) and Panchromatic (PAN) Images

    PubMed Central

    Jung, Hyung-Sup; Park, Sung-Whan

    2014-01-01

    Data fusion is defined as the combination of data from multiple sensors such that the resulting information is better than would be possible when the sensors are used individually. The multi-sensor fusion of panchromatic (PAN) and thermal infrared (TIR) images is a good example of this data fusion. While a PAN image has higher spatial resolution, a TIR one has lower spatial resolution. In this study, we have proposed an efficient method to fuse Landsat 8 PAN and TIR images using an optimal scaling factor in order to control the trade-off between the spatial details and the thermal information. We have compared the fused images created from different scaling factors and then tested the performance of the proposed method at urban and rural test areas. The test results show that the proposed method merges the spatial resolution of PAN image and the temperature information of TIR image efficiently. The proposed method may be applied to detect lava flows of volcanic activity, radioactive exposure of nuclear power plants, and surface temperature change with respect to land-use change. PMID:25529207

  9. Multi-sensor fusion of Landsat 8 thermal infrared (TIR) and panchromatic (PAN) images.

    PubMed

    Jung, Hyung-Sup; Park, Sung-Whan

    2014-01-01

    Data fusion is defined as the combination of data from multiple sensors such that the resulting information is better than would be possible when the sensors are used individually. The multi-sensor fusion of panchromatic (PAN) and thermal infrared (TIR) images is a good example of this data fusion. While a PAN image has higher spatial resolution, a TIR one has lower spatial resolution. In this study, we have proposed an efficient method to fuse Landsat 8 PAN and TIR images using an optimal scaling factor in order to control the trade-off between the spatial details and the thermal information. We have compared the fused images created from different scaling factors and then tested the performance of the proposed method at urban and rural test areas. The test results show that the proposed method merges the spatial resolution of PAN image and the temperature information of TIR image efficiently. The proposed method may be applied to detect lava flows of volcanic activity, radioactive exposure of nuclear power plants, and surface temperature change with respect to land-use change. PMID:25529207

  10. On the theory relating changes in area-average and pan evaporation (Invited)

    NASA Astrophysics Data System (ADS)

    Shuttleworth, W.; Serrat-Capdevila, A.; Roderick, M. L.; Scott, R.

    2009-12-01

    Theory relating changes in area-average evaporation with changes in the evaporation from pans or open water is developed. Such changes can arise by Type (a) processes related to large-scale changes in atmospheric concentrations and circulation that modify surface evaporation rates in the same direction, and Type (b) processes related to coupling between the surface and atmospheric boundary layer (ABL) at the landscape scale that usually modify area-average evaporation and pan evaporation in different directions. The interrelationship between evaporation rates in response to Type (a) changes is derived. They have the same sign and broadly similar magnitude but the change in area-average evaporation is modified by surface resistance. As an alternative to assuming the complementary evaporation hypothesis, the results of previous modeling studies that investigated surface-atmosphere coupling are parameterized and used to develop a theoretical description of Type (b) coupling via vapor pressure deficit (VPD) in the ABL. The interrelationship between appropriately normalized pan and area-average evaporation rates is shown to vary with temperature and wind speed but, on average, the Type (b) changes are approximately equal and opposite. Long-term Australian pan evaporation data are analyzed to demonstrate the simultaneous presence of Type (a) and (b) processes, and observations from three field sites in southwestern USA show support for the theory describing Type (b) coupling via VPD. England's victory over Australia in 2009 Ashes cricket test match series will not be mentioned.

  11. Biogeomorphically driven salt pan formation in Sarcocornia-dominated salt-marshes

    NASA Astrophysics Data System (ADS)

    Escapa, Mauricio; Perillo, Gerardo M. E.; Iribarne, Oscar

    2015-01-01

    Salt-marshes are under increasing threat, particularly from sea-level rise and increased wave action associated with climate change. The development and stability of these valuable habitats largely depend on complex interactions between biotic and abiotic processes operating at different scales. Also, interactions between biotic and abiotic processes drive internal morphological change in salt-marshes. In this paper we used a biogeomorphological approach to assess the impact of biological activities and interactions on salt pan formation in Sarcocornia-dominated salt marshes. Salt pans represent a key physiographic feature of salt-marshes and recent studies hypothesized that biogeomorphic processes could be related to salt pan formation in SW Atlantic salt-marshes. The glasswort Sarcocornia perennis is one of the dominant plants in the salt-marshes of the Bahía Blanca Estuary (Argentina) where they form patches up to 8 m in diameter. These salt-marshes are also inhabited in great densities by the burrowing crab Neohelice (Chasmagnathus) granulata whose bioturbation rates are among the highest reported for salt-marshes worldwide. A set of biological interactions between N. granulata and S. perennis appears to be responsible for salt pan development in these areas which has not been described elsewhere. The main objective of this work was to determine the ecological interactions occurring between plants and crabs that lead to salt pan formation by using field-based sampling and manipulative experiments. Our results showed that S. perennis facilitated crab colonization of the salt-marsh by buffering otherwise stressful physical conditions (e.g., temperature, desiccation). Crabs preferred to construct burrows underneath plants and, once they reach high densities (up to 40 burrows m- 2), the sediment reworking caused plant die-off in the central area of patches. At this state, the patches lose elevation and become depressed due to the continuous bioturbation by crabs

  12. Evaporation from the shallow Lake Massaciuccoli (Tuscany, Italy) studied using stable isotopes and evaporation pan data

    NASA Astrophysics Data System (ADS)

    Baneschi, I.; Gonfiantini, R.; Guidi, M.

    2009-04-01

    Oxygen and hydrogen isotope variations monitored in Lake Massaciuccoli (7 km2, 2 m deep, seasonally variable water level) during summer 2008, were compared with those observed in a Class A evaporation pan (diameter 120.6 cm, depth 25.4 cm) placed on the lake eastern shore. Air temperature, pressure, relative humidity, wind speed and direction, solar radiation, water temperature in the lake and the pan were also measured. The pluviometer indicated that no precipitation occurred during the study period. The pan was initially filled with groundwater up to the level of 19.2 cm (219 L), depleted in heavy isotopes with respect to tha lake water. Sodium chloride was added up to the concentration of 1 g×L-1, which is assumed do not affect significantly the evaporation rate till the water volume is reduced to less than 10 %. The Cl- concentration was used to provide an estimation of the evaporated water fraction, in addition to the micrometer measuring the water level variations. The pan water was sampled every 2-3 days and Cl- and stable isotopes determined. The set of stable isotope and evaporation data enabled us to compute the parameters governing the evaporation process and the isotopic exchanges with the atmospheric moisture, according to the procedure proposed by Gonfiantini (1986). The values were applied to test three working hypotheses of water balance of Lake Massaciuccoli: (i) surface inflow and outflow of liquid water are negligible and only evaporation is important; (ii) the inflow is negligible and outflow and evaporation are both significant; (iii) the three terms of balance are all important but the losses by evaporation and outflow exceed inflow (as the lake water level was decreasing). Water exchanges with groundwater are considered negligible. The best agreement between lake and pan data was obtained with the second hypothesis, for which the fraction of water removed by evaporation was estimated to be about 40 % ot he total water losses. This residual

  13. Present and past microbial life in continental salt pan sediments in Southern Africa

    NASA Astrophysics Data System (ADS)

    Genderjahn, Steffi; Mangelsdorf, Kai; Alawi, Mashal; Kallmeyer, Jens; Wagner, Dirk

    2015-04-01

    The southwestern African region is characterized by strong climate variability. To get a better understanding on the climate evolution and environmental condition in Namibia and South Africa, terrestrial climate archives are investigated. Since there are almost no lakes, continental salt pans represent the only terrestrial geoarchives with the potential to preserve climate signals during sediment deposition. Climate has a strong impact on the salt pan ecosystem, causing adaptation of salt pan microorganisms to varying temperature, precipitation and salinity conditions. To reconstruct climate variability during the Holocene, the composition, diversity and abundance of indigenous microbial communities with depth and related to different soil parameters are investigated. We are using a combined approach of microbiological and lipid biomarker analyses to demonstrate the response of the microbial communities due to environmental changes. For microbiological analyses outcrops were conducted or short cores (0-100 cm) were drilled at four different salt pans in Aminuis, Koes and Witpan region having rather different geochemical properties. The current work focused on changes within the microbial communities due to the impact of long-term climate variation and the associated environmental changes and is part of the project 'Signals of climate and landscape change preserved in southern African GeoArchives' in the scope of the SPACES program, which is funded by the German Federal Ministry of Education and Research (BMBF). For a quantitative characterization of microbial communities molecular techniques such as polymerase chain reaction (PCR) and real-time quantitative PCR (qPCR) based on the 16S rRNA genes are used. Moreover, 454 sequencing technique is utilized to describe the diversity and abundance of microorganisms in detail. Soil parameters are described by standard soil scientific methods. Furthermore, microbial lipid biomarker analyses were done to characterize living

  14. Innovative uses of GigaPan Technology for Onsite and Distance Education

    NASA Astrophysics Data System (ADS)

    Bentley, C.; Schott, R. C.; Piatek, J. L.; Richards, B.

    2013-12-01

    GigaPans are gigapixel panoramic images that can be viewed at a wide range of magnifications, allowing users to explore them in various degrees of detail from the smallest scale to the full image extent. In addition to panoramic images captured with the GigaPan camera mount ('Dry Falls' - http://www.gigapan.com/gigapans/89093), users can also upload annotated images (For example, 'Massanutten sandstone slab with trace fossils (annotated)', http://www.gigapan.com/gigapans/124295) and satellite images (For example, 'Geology vs. Topography - State of Connecticut', http://www.gigapan.com/gigapans/111265). Panoramas with similar topics have been gathered together on the site in galleries, both user-generated and site-curated (For example, http://www.gigapan.com/galleries?categories=geology&page=1). Further innovations in display technology have also led to the development of improved viewers (for example, the annotations in the image linked above can be explored via paired viewers at http://coursecontent.nic.edu/bdrichards/gigapixelimages/callanview) GigaPan panoramas can be created through use of the GigaPan robotic camera mount and a digital camera (different models of the camera mount are available and work with a wide range of cameras). The camera mount can be used to create high-resolution pans ranging in scale from hand sample to outcrop up to landscape via the stitching software included with the robotic mount. The software can also be used to generate GigaPan images from other sources, such as thin section or satellite images, so these images can also be viewed with the online viewer. GigaPan images are typically viewed via a web-based interface that allows the user to interact with the image from the limits of the image detail up to the full panorama. After uploading, information can be added to panoramas with both text captions and geo-referencing (geo-located panoramas can then be viewed in Google Earth). Users can record specific locations and zoom levels in

  15. Posttranscriptional regulation of the RAD5 DNA repair gene by the Dun1 kinase and the Pan2-Pan3 poly(A)-nuclease complex contributes to survival of replication blocks.

    PubMed

    Hammet, Andrew; Pike, Brietta L; Heierhorst, Jörg

    2002-06-21

    The yeast Dun1 kinase has complex checkpoint functions including DNA damage-dependent cell cycle arrest in G(2)/M, transcriptional induction of repair genes, and regulation of postreplicative DNA repair pathways. Here we report that the Dun1 forkhead-associated domain interacts with the Pan3 subunit of the poly(A)-nuclease complex and that dun1pan2 and dun1pan3 double mutants are dramatically hypersensitive to replicational stress. This phenotype was independent of the function of Dun1 in regulating deoxyribonucleotide levels as it was also observed in strains lacking the ribonucleotide reductase inhibitor Sml1. dun1pan2 mutants initially arrested normally in response to replication blocks but died in the presence of persistent replication blocks with considerably delayed kinetics compared with mutants lacking the Rad53 kinase, indicating that the double mutation does not compromise the intra-S phase checkpoint. Interestingly, the RAD5 gene involved in error-free postreplication repair pathways was specifically up-regulated in dun1pan2 double mutants. Moreover, inducible overexpression of RAD5 mimicked the double mutant phenotype by hypersensitizing dun1 mutants to replication blocks. The data indicate that Dun1 and Pan2-Pan3 cooperate to regulate the stoichiometry and thereby the activity of postreplication repair complexes, suggesting that posttranscriptional mechanisms complement the transcriptional response in the regulation of gene expression by checkpoint signaling pathways in Saccharomyces cerevisiae. PMID:11953437

  16. PanDA Pilot Submission using Condor-G: Experience and Improvements

    SciTech Connect

    Zhao X.; Hover John; Wlodek Tomasz; Wenaus Torre; Frey Jaime; Tannenbaum Todd; Livny Miron

    2011-01-01

    PanDA (Production and Distributed Analysis) is the workload management system of the ATLAS experiment, used to run managed production and user analysis jobs on the grid. As a late-binding, pilot-based system, the maintenance of a smooth and steady stream of pilot jobs to all grid sites is critical for PanDA operation. The ATLAS Computing Facility (ACF) at BNL, as the ATLAS Tier1 center in the US, operates the pilot submission systems for the US. This is done using the PanDA 'AutoPilot' scheduler component which submits pilot jobs via Condor-G, a grid job scheduling system developed at the University of Wisconsin-Madison. In this paper, we discuss the operation and performance of the Condor-G pilot submission at BNL, with emphasis on the challenges and issues encountered in the real grid production environment. With the close collaboration of Condor and PanDA teams, the scalability and stability of the overall system has been greatly improved over the last year. We review improvements made to Condor-G resulting from this collaboration, including isolation of site-based issues by running a separate Gridmanager for each remote site, introduction of the 'Nonessential' job attribute to allow Condor to optimize its behavior for the specific character of pilot jobs, better understanding and handling of the Gridmonitor process, as well as better scheduling in the PanDA pilot scheduler component. We will also cover the monitoring of the health of the system.

  17. PanDA Pilot Submission using Condor-G: Experience and Improvements

    NASA Astrophysics Data System (ADS)

    Zhao, Xin; Hover, John; Wlodek, Tomasz; Wenaus, Torre; Frey, Jaime; Tannenbaum, Todd; Livny, Miron; ATLAS Collaboration

    2011-12-01

    PanDA (Production and Distributed Analysis) is the workload management system of the ATLAS experiment, used to run managed production and user analysis jobs on the grid. As a late-binding, pilot-based system, the maintenance of a smooth and steady stream of pilot jobs to all grid sites is critical for PanDA operation. The ATLAS Computing Facility (ACF) at BNL, as the ATLAS Tier1 center in the US, operates the pilot submission systems for the US. This is done using the PanDA "AutoPilot" scheduler component which submits pilot jobs via Condor-G, a grid job scheduling system developed at the University of Wisconsin-Madison. In this paper, we discuss the operation and performance of the Condor-G pilot submission at BNL, with emphasis on the challenges and issues encountered in the real grid production environment. With the close collaboration of Condor and PanDA teams, the scalability and stability of the overall system has been greatly improved over the last year. We review improvements made to Condor-G resulting from this collaboration, including isolation of site-based issues by running a separate Gridmanager for each remote site, introduction of the 'Nonessential' job attribute to allow Condor to optimize its behavior for the specific character of pilot jobs, better understanding and handling of the Gridmonitor process, as well as better scheduling in the PanDA pilot scheduler component. We will also cover the monitoring of the health of the system.

  18. The evolutionary history of the hominin hand since the last common ancestor of Pan and Homo.

    PubMed

    Tocheri, Matthew W; Orr, Caley M; Jacofsky, Marc C; Marzke, Mary W

    2008-04-01

    Molecular evidence indicates that the last common ancestor of the genus Pan and the hominin clade existed between 8 and 4 million years ago (Ma). The current fossil record indicates the Pan-Homo last common ancestor existed at least 5 Ma and most likely between 6 and 7 Ma. Together, the molecular and fossil evidence has important consequences for interpreting the evolutionary history of the hand within the tribe Hominini (hominins). Firstly, parsimony supports the hypothesis that the hand of the last common ancestor most likely resembled that of an extant great ape overall (Pan, Gorilla, and Pongo), and that of an African ape in particular. Second, it provides a context for interpreting the derived changes to the hand that have evolved in various hominins. For example, the Australopithecus afarensis hand is likely derived in comparison with that of the Pan-Homo last common ancestor in having shorter fingers relative to thumb length and more proximo-distally oriented joints between its capitate, second metacarpal, and trapezium. This evidence suggests that these derived features evolved prior to the intensification of stone tool-related hominin behaviors beginning around 2.5 Ma. However, a majority of primitive features most likely present in the Pan-Homo last common ancestor are retained in the hands of Australopithecus, Paranthropus/early Homo, and Homo floresiensis. This evidence suggests that further derived changes to the hands of other hominins such as modern humans and Neandertals did not evolve until after 2.5 Ma and possibly even later than 1.5 Ma, which is currently the earliest evidence of Acheulian technology. The derived hands of modern humans and Neandertals may indicate a morphological commitment to tool-related manipulative behaviors beyond that observed in other hominins, including those (e.g. H. floresiensis) which may be descended from earlier tool-making species. PMID:18380869

  19. Demographic History of the Genus Pan Inferred from Whole Mitochondrial Genome Reconstructions

    PubMed Central

    Tucci, Serena; de Manuel, Marc; Ghirotto, Silvia; Benazzo, Andrea; Prado-Martinez, Javier; Lorente-Galdos, Belen; Nam, Kiwoong; Dabad, Marc; Hernandez-Rodriguez, Jessica; Comas, David; Navarro, Arcadi; Schierup, Mikkel H.; Andres, Aida M.; Barbujani, Guido; Hvilsom, Christina; Marques-Bonet, Tomas

    2016-01-01

    The genus Pan is the closest genus to our own and it includes two species, Pan paniscus (bonobos) and Pan troglodytes (chimpanzees). The later is constituted by four subspecies, all highly endangered. The study of the Pan genera has been incessantly complicated by the intricate relationship among subspecies and the statistical limitations imposed by the reduced number of samples or genomic markers analyzed. Here, we present a new method to reconstruct complete mitochondrial genomes (mitogenomes) from whole genome shotgun (WGS) datasets, mtArchitect, showing that its reconstructions are highly accurate and consistent with long-range PCR mitogenomes. We used this approach to build the mitochondrial genomes of 20 newly sequenced samples which, together with available genomes, allowed us to analyze the hitherto most complete Pan mitochondrial genome dataset including 156 chimpanzee and 44 bonobo individuals, with a proportional contribution from all chimpanzee subspecies. We estimated the separation time between chimpanzees and bonobos around 1.15 million years ago (Mya) [0.81–1.49]. Further, we found that under the most probable genealogical model the two clades of chimpanzees, Western + Nigeria-Cameroon and Central + Eastern, separated at 0.59 Mya [0.41–0.78] with further internal separations at 0.32 Mya [0.22–0.43] and 0.16 Mya [0.17–0.34], respectively. Finally, for a subset of our samples, we compared nuclear versus mitochondrial genomes and we found that chimpanzee subspecies have different patterns of nuclear and mitochondrial diversity, which could be a result of either processes affecting the mitochondrial genome, such as hitchhiking or background selection, or a result of population dynamics. PMID:27345955

  20. Demographic History of the Genus Pan Inferred from Whole Mitochondrial Genome Reconstructions.

    PubMed

    Lobon, Irene; Tucci, Serena; de Manuel, Marc; Ghirotto, Silvia; Benazzo, Andrea; Prado-Martinez, Javier; Lorente-Galdos, Belen; Nam, Kiwoong; Dabad, Marc; Hernandez-Rodriguez, Jessica; Comas, David; Navarro, Arcadi; Schierup, Mikkel H; Andres, Aida M; Barbujani, Guido; Hvilsom, Christina; Marques-Bonet, Tomas

    2016-01-01

    The genus Pan is the closest genus to our own and it includes two species, Pan paniscus (bonobos) and Pan troglodytes (chimpanzees). The later is constituted by four subspecies, all highly endangered. The study of the Pan genera has been incessantly complicated by the intricate relationship among subspecies and the statistical limitations imposed by the reduced number of samples or genomic markers analyzed. Here, we present a new method to reconstruct complete mitochondrial genomes (mitogenomes) from whole genome shotgun (WGS) datasets, mtArchitect, showing that its reconstructions are highly accurate and consistent with long-range PCR mitogenomes. We used this approach to build the mitochondrial genomes of 20 newly sequenced samples which, together with available genomes, allowed us to analyze the hitherto most complete Pan mitochondrial genome dataset including 156 chimpanzee and 44 bonobo individuals, with a proportional contribution from all chimpanzee subspecies. We estimated the separation time between chimpanzees and bonobos around 1.15 million years ago (Mya) [0.81-1.49]. Further, we found that under the most probable genealogical model the two clades of chimpanzees, Western + Nigeria-Cameroon and Central + Eastern, separated at 0.59 Mya [0.41-0.78] with further internal separations at 0.32 Mya [0.22-0.43] and 0.16 Mya [0.17-0.34], respectively. Finally, for a subset of our samples, we compared nuclear versus mitochondrial genomes and we found that chimpanzee subspecies have different patterns of nuclear and mitochondrial diversity, which could be a result of either processes affecting the mitochondrial genome, such as hitchhiking or background selection, or a result of population dynamics. PMID:27345955

  1. Utility of coactive neuro-fuzzy inference system for pan evaporation modeling in comparison with multilayer perceptron

    NASA Astrophysics Data System (ADS)

    Tabari, Hossein; Hosseinzadeh Talaee, P.; Abghari, Hirad

    2012-05-01

    Estimation of pan evaporation ( E pan) using black-box models has received a great deal of attention in developing countries where measurements of E pan are spatially and temporally limited. Multilayer perceptron (MLP) and coactive neuro-fuzzy inference system (CANFIS) models were used to predict daily E pan for a semi-arid region of Iran. Six MLP and CANFIS models comprising various combinations of daily meteorological parameters were developed. The performances of the models were tested using correlation coefficient ( r), root mean square error (RMSE), mean absolute error (MAE) and percentage error of estimate (PE). It was found that the MLP6 model with the Momentum learning algorithm and the Tanh activation function, which requires all input parameters, presented the most accurate E pan predictions ( r = 0.97, RMSE = 0.81 mm day-1, MAE = 0.63 mm day-1 and PE = 0.58 %). The results also showed that the most accurate E pan predictions with a CANFIS model can be achieved with the Takagi-Sugeno-Kang (TSK) fuzzy model and the Gaussian membership function. Overall performances revealed that the MLP method was better suited than CANFIS method for modeling the E pan process.

  2. Gerhart Panning (1900-1944): a German forensic pathologist and his involvement in Nazi crimes during Second World War.

    PubMed

    Preuss, Johanna; Madea, Burkhard

    2009-03-01

    Twenty years after the Second World War the public were made aware of War Crimes committed by the German forensic pathologist, Gerhart Panning (1900-1944). From 1942 till 1944, Panning was professor at the Institute of Forensic Medicine at the University of Bonn. Panning died of tuberculosis on 22 March 1944. After the Second World War, Panning's widow tried to obtain denazification for her husband. There were no particularly serious doubts. In 1965, Konrad Graf von Moltke, the son of Helmuth James Graf von Moltke (1907-1944), presented to the court a private letter from his father to his mother. In this letter, written in 1941, Panning's experiments on Soviet prisoners are described. In the so-called Callsen trial in the court of Darmstadt from 1960 to 1968, the experiments were confirmed by witnesses. In 1941, Panning performed experiments in cooperation with the Sicherheitsstaffel (Nazi special police) in the Ukraine to prove that captured ammunition of the soviet infantry violated international law. For this purpose, different parts of the bodies of living Soviets were used as firing targets. He published the results of these experiments in a scientific journal without any evidence of the origin of these observations. In this article, Panning's life and crimes have been described. PMID:19237846

  3. PAN-811 Blocks Chemotherapy Drug-Induced In Vitro Neurotoxicity, While Not Affecting Suppression of Cancer Cell Growth

    PubMed Central

    Jiang, Zhi-Gang; Fuller, Steven A.; Ghanbari, Hossein A.

    2016-01-01

    Chemotherapy often results in cognitive impairment, and no neuroprotective drug is now available. This study aimed to understand underlying neurotoxicological mechanisms of anticancer drugs and to evaluate neuroprotective effects of PAN-811. Primary neurons in different concentrations of antioxidants (AOs) were insulted for 3 days with methotrexate (MTX), 5-fluorouracil (5-FU), or cisplatin (CDDP) in the absence or presence of PAN-811·Cl·H2O. The effect of PAN-811 on the anticancer activity of tested drugs was also examined using mouse and human cancer cells (BNLT3 and H460) to assess any negative interference. Cell membrane integrity, survival, and death and intramitochondrial reactive oxygen species (ROS) were measured. All tested anticancer drugs elicited neurotoxicity only under low levels of AO and elicited a ROS increase. These results suggested that ROS mediates neurotoxicity of tested anticancer drugs. PAN-811 dose-dependently suppressed increased ROS and blocked the neurotoxicity when neurons were insulted with a tested anticancer drug. PAN-811 did not interfere with anticancer activity of anticancer drugs against BNLT3 cells. PAN-811 did not inhibit MTX-induced death of H460 cells but, interestingly, demonstrated a synergistic effect with 5-FU or CDDP in reducing cancer cell viability. Thus, PAN-811 can be a potent drug candidate for chemotherapy-induced cognitive impairment. PMID:26640619

  4. PANS - A Detailed Study of the Patients, Their Symptoms, Biomarkers and Treatment Offered in a Scandinavian Cohort

    ClinicalTrials.gov

    2016-07-04

    Obsessive-compulsive Disorder With Acute Onset; PANDAS; Pediatric Autoimmune Neuropsychiatric Disorders Associated With Streptococcal Infections; Pediatric Acute-onset Neuropsychiatric Syndrome (PANS); Childhood Acute Neuropsychiatric Symptoms (CANS); Obsessive-compulsive Disorder

  5. Panchromatic Fourier Transform Spectrometer (PanFTS) for the Geostationary Coastal and Air Pollution Events (GEO-CAPE)Mission

    NASA Astrophysics Data System (ADS)

    Sander, S. P.; Beer, R.; Blavier, J.; Bowman, K.; Eldering, A.; Rider, D.; Toon, G.; Traub, W.; Worden, J.

    2008-12-01

    The NRC decadal survey proposed the GEO-CAPE and GACM missions to study changes in atmospheric composition and the coastal oceans. To properly address air quality, the decadal survey highlighted the need for vertical profile measurements with sensitivity into the atmospheric boundary layer. The Panchromatic Fourier Transform Spectrometer (PanFTS), a new project within the NASA Instrument Incubator Program, will measure all of the trace species called out in the decadal survey for GEO-CAPE and GACM. With continuous sensitivity from 0.26 to 15 micron and high spectral resolution, PanFTS combines the functionality of separate UV, visible and IR instruments in a single package. These capabilities also permit PanFTS to meet the requirements for high spatial resolution hyperspectral imaging of the coastal zone. This presentation will discuss the design approach and technology development challenges for PanFTS including high speed, high resolution focal plane arrays, and wide spectral coverage optical design.

  6. Panchromatic Fourier Transform Spectrometer (PanFTS) for the Geostationary Coastal and Air Pollution Events (GEO-CAPE) Mission

    NASA Astrophysics Data System (ADS)

    Sander, S. P.; Beer, R.; Blavier, J. L.; Bowman, K. W.; Eldering, A.; Key, R.; Rider, D.; Toon, G. C.; Traub, W. A.; Worden, J.

    2009-12-01

    The NRC decadal survey proposed the GEO-CAPE and GACM missions to study changes in atmospheric composition and the coastal oceans. To properly address air quality, the decadal survey highlighted the need for vertical profile measurements with sensitivity into the atmospheric boundary layer. The Panchromatic Fourier Transform Spectrometer (PanFTS), a new project within the NASA Instrument Incubator Program, will measure all of the trace species called out in the decadal survey for GEO-CAPE and GACM. With continuous sensitivity from 0.26 to 15 micron and high spectral resolution, PanFTS combines the functionality of separate UV, visible and IR instruments in a single package. These capabilities also permit PanFTS to meet the requirements for high spatial resolution hyperspectral imaging of the coastal zone. This presentation will discuss the design approach and technology development challenges for PanFTS including high speed, high resolution focal plane arrays, and wide spectral coverage optical design.

  7. All great ape species (Gorilla gorilla, Pan paniscus, Pan troglodytes, Pongo abelii) and two-and-a-half-year-old children (Homo sapiens) discriminate appearance from reality.

    PubMed

    Karg, Katja; Schmelz, Martin; Call, Josep; Tomasello, Michael

    2014-11-01

    Nonhuman great apes and human children were tested for an understanding that appearance does not always correspond to reality. Subjects were 29 great apes (bonobos [Pan paniscus], chimpanzees [Pan troglodytes], gorillas [Gorilla gorilla], and orangutans [Pongo abelii]) and 24 2½-year-old children. In our task, we occluded portions of 1 large and 1 small food stick such that the size relations seemed reversed. Subjects could then choose which one they wanted. There was 1 control condition and 2 experimental conditions (administered within subjects). In the control condition subjects saw only the apparent stick sizes, whereas in the 2 experimental conditions they saw the true stick sizes as well (the difference between them being what the subjects saw first: the apparent or the real stick sizes). All great ape species and children successfully identified the bigger stick, despite its smaller appearance, in the experimental conditions, but not in the control. We discuss these results in relation to the understanding of object permanence and conservation, and exclude reversed reward contingency learning as an explanation. PMID:25150962

  8. How did bonobos come to range south of the congo river? Reconsideration of the divergence of Pan paniscus from other Pan populations.

    PubMed

    Takemoto, Hiroyuki; Kawamoto, Yoshi; Furuichi, Takeshi

    2015-01-01

    While investigating the genetic structure in wild bonobos,(1) we realized that the widely accepted scenario positing that the Pleistocene appearance of the Congo River separated the common ancestor of chimpanzees (Pan troglodytes) and bonobos (P. paniscus) into two species is not supported by recent geographical knowledge about the formation of the Congo River. We explored the origin of bonobos using a broader biogeographical perspective by examining local faunas in the central African region. The submarine Congo River sediments and paleotopography of central Africa show that the Congo River has functioned as a geographical barrier for the last 34 million years. This evidence allows us to hypothesize that when the river was first formed, the ancestor of bonobos did not inhabit the current range of the species on the left bank of the Congo River but that, during rare times when the Congo River discharge decreased during the Pleistocene, one or more founder populations of ancestral Pan paniscus crossed the river to its left bank. The proposed scenario for formation of the Congo River and the corridor hypothesis for an ancestral bonobo population is key to understanding the distribution of great apes and their evolution. PMID:26478139

  9. Numerical prediction of pressure fluctuations in a prototype pump turbine base on PANS methods

    NASA Astrophysics Data System (ADS)

    Liu, J. T.; Li, Y.; Gao, Y.; Hu, Q.; Wu, Y. L.

    2016-05-01

    Unsteady flow and pressure fluctuations within a prototypel pump turbine are numerically studied using a nonlinear Partial Averaged Navier Stokes (PANS) model. Pump turbine operating at different conditions with guide vanes opening angle 6° is simulated. Results revealed that the predictions of performance and relative peak-to-peak amplitude by PANS approach agree well with the experimental data. The amplitude of the pressure fluctuation in the vaneless space at turbine mode on a “S” curve increases with the decrease of the flow rate, and it has maximum value when it runs close to runaway line at turbine braking mode. The amplitude of the pressure fluctuation in the vaneless space at turbine braking mode on a “S” curve decreases with the reduce of the flow rate. The above high pressure fluctuations should be avoided during the design of pump turbines especially those operating at high-head condition.

  10. Publishing datasets with eSciDoc and panMetaDocs

    NASA Astrophysics Data System (ADS)

    Ulbricht, D.; Klump, J.; Bertelmann, R.

    2012-04-01

    Currently serveral research institutions worldwide undertake considerable efforts to have their scientific datasets published and to syndicate them to data portals as extensively described objects identified by a persistent identifier. This is done to foster the reuse of data, to make scientific work more transparent, and to create a citable entity that can be referenced unambigously in written publications. GFZ Potsdam established a publishing workflow for file based research datasets. Key software components are an eSciDoc infrastructure [1] and multiple instances of the data curation tool panMetaDocs [2]. The eSciDoc repository holds data objects and their associated metadata in container objects, called eSciDoc items. A key metadata element in this context is the publication status of the referenced data set. PanMetaDocs, which is based on PanMetaWorks [3], is a PHP based web application that allows to describe data with any XML-based metadata schema. The metadata fields can be filled with static or dynamic content to reduce the number of fields that require manual entries to a minimum and make use of contextual information in a project setting. Access rights can be applied to set visibility of datasets to other project members and allow collaboration on and notifying about datasets (RSS) and interaction with the internal messaging system, that was inherited from panMetaWorks. When a dataset is to be published, panMetaDocs allows to change the publication status of the eSciDoc item from status "private" to "submitted" and prepare the dataset for verification by an external reviewer. After quality checks, the item publication status can be changed to "published". This makes the data and metadata available through the internet worldwide. PanMetaDocs is developed as an eSciDoc application. It is an easy to use graphical user interface to eSciDoc items, their data and metadata. It is also an application supporting a DOI publication agent during the process of

  11. Strengthened PAN-based carbon fibers obtained by slow heating rate carbonization

    PubMed Central

    Kim, Min-A; Jang, Dawon; Tejima, Syogo; Cruz-Silva, Rodolfo; Joh, Han-Ik; Kim, Hwan Chul; Lee, Sungho; Endo, Morinobu

    2016-01-01

    Large efforts have been made over the last 40 years to increase the mechanical strength of polyacrylonitrile (PAN)-based carbon fibers (CFs) using a variety of chemical or physical protocols. In this paper, we report a new method to increase CFs mechanical strength using a slow heating rate during the carbonization process. This new approach increases both the carbon sp3 bonding and the number of nitrogen atoms with quaternary bonding in the hexagonal carbon network. Theoretical calculations support a crosslinking model promoted by the interstitial carbon atoms located in the graphitic interlayer spaces. The improvement in mechanical performance by a controlled crosslinking between the carbon hexagonal layers of the PAN based CFs is a new concept that can contribute further in the tailoring of CFs performance based on the understanding of their microstructure down to the atomic scale. PMID:27004752

  12. Strengthened PAN-based carbon fibers obtained by slow heating rate carbonization

    NASA Astrophysics Data System (ADS)

    Kim, Min-A.; Jang, Dawon; Tejima, Syogo; Cruz-Silva, Rodolfo; Joh, Han-Ik; Kim, Hwan Chul; Lee, Sungho; Endo, Morinobu

    2016-03-01

    Large efforts have been made over the last 40 years to increase the mechanical strength of polyacrylonitrile (PAN)-based carbon fibers (CFs) using a variety of chemical or physical protocols. In this paper, we report a new method to increase CFs mechanical strength using a slow heating rate during the carbonization process. This new approach increases both the carbon sp3 bonding and the number of nitrogen atoms with quaternary bonding in the hexagonal carbon network. Theoretical calculations support a crosslinking model promoted by the interstitial carbon atoms located in the graphitic interlayer spaces. The improvement in mechanical performance by a controlled crosslinking between the carbon hexagonal layers of the PAN based CFs is a new concept that can contribute further in the tailoring of CFs performance based on the understanding of their microstructure down to the atomic scale.

  13. Pan Eurasian EXperiment (PEEX) - towards a new multinational environment and climate research effort in Eurasia

    NASA Astrophysics Data System (ADS)

    Petäjä, Tuukka; Kulmala, Markku; Lappalainen, Hanna; Sipilä, Mikko; Sorvari, Sanna; Alekseychik, Pavel; Paramonov, Mikhail; Kerminen, Veli-Matti; Zilitinkevich, Sergej

    2013-04-01

    Boreal forests are a substantial source of greenhouse gases, biogenic volatile organic compounds (BVOCs) and natural aerosols, the critical atmospheric components related to climate change processes. A large fraction of boreal forests of the world is situated in Siberian region. Representative measurements of carbon dioxide (CO2) and methane (CH4) concentrations, BVOC emissions and aerosols production from Siberian are of special importance when estimating global budgets of climate change relevant factors. The scope of a new concept of the Pan Eurasian Experiment (PEEX) is to set up a process for planning of a large-scale, long-term, coordinated observations and modeling experiment in the Pan Eurasian region, especially to cover ground base, airborne and satellite observations together with global and regional models to find out different forcing and feedback mechanisms in the changing climate. University of Helsinki together with Finnish Meteorological institute are organizing the Pan-Eurasian Experiment and to gather all the European and Russian key players in the field of climate and Earth system science to plan the future research activities in the Pan-Eurasian region. In the European scale PEEX is part of the JPI Climate Fast Track Activity 1.3. "Changing cryosphere in the climate system - from observations to climate modeling". PEEX research topics are closely related the NordForsk's Top Research Initiative CRAICC - Cryosphere - atmosphere interaction in the changing Arctic climate. PEEX is also a central part of the ongoing the Finnish Cultural Foundation - Earth System modeling Working Group activity (2012-2013). PEEX scientific aims and future actions to develop Pan Eurasian research infrastructure can be linked to several EC and ESA funded activities aiming to develop next generation research infrastructures and data products: EU-FP7-ACTRIS-I3-project (Aerosols, Clouds, and Trace gases Research InfraStructure Network-project 2011-2015); ICOS a research

  14. Characterization of proton conducting blend polymer electrolyte using PVA-PAN doped with NH4SCN

    NASA Astrophysics Data System (ADS)

    Premalatha, M.; Mathavan, T.; Selvasekarapandian, S.; Genova, F. Kingslin Mary; Umamaheswari, R.

    2016-05-01

    Polymer electrolytes with proton conductivity based on blend polymer using polyvinyl alcohol (PVA) and poly acrylo nitrile (PAN) doped with ammonium thiocyanate have been prepared by solution casting method using DMF as solvent. The complex formation between the blend polymer and the salt has been confirmed by FTIR Spectroscopy. The amorphous nature of the blend polymer electrolytes have been confirmed by XRD analysis. The highest conductivity at 303 K has been found to be 3.25 × 10-3 S cm-1 for 20 mol % NH4SCN doped 92.5PVA:7.5PAN system. The increase in conductivity of the doped blend polymer electrolytes with increasing temperature suggests the Arrhenius type thermally activated process. The activation energy is found to be low (0.066 eV) for the highest conductivity sample.

  15. Pan-Nitinol Occluder and Special Delivery Device for Closure of Patent Ductus Arteriosus

    PubMed Central

    Jiang, Hai-bin; Bai, Yuan; Zong, Gang-jun; Han, Lin; Li, Wei-ping; Lu, Yang; Qin, Yong-wen; Zhao, Xian-xian

    2013-01-01

    The aim of this study was to evaluate a new type of occluder for patent ductus arteriosus. Patent ductus arteriosus was established in a canine model by anastomosing a length of autologous jugular vein to the descending aorta and the left pulmonary artery in an end-to-side fashion. Transcatheter closure of each patent ductus arteriosus was performed on 10 dogs, which were then monitored for as long as 6 months with aortography, echocardiography, and histologic evaluation. Transcatheter closure with use of the novel pan-nitinol device was successful in all canine models. Postoperative echocardiography showed that the location and shape of the occluders were normal, without any residual shunting. Further histologic evaluation confirmed that the occluder surface was completely endothelialized 3 months after implantation. Transcatheter patent ductus arteriosus closure with the pan-nitinol occluder can be performed safely and successfully in a canine model and shows good biological compatibility and low mortality rates. PMID:23466429

  16. Strengthened PAN-based carbon fibers obtained by slow heating rate carbonization.

    PubMed

    Kim, Min-A; Jang, Dawon; Tejima, Syogo; Cruz-Silva, Rodolfo; Joh, Han-Ik; Kim, Hwan Chul; Lee, Sungho; Endo, Morinobu

    2016-01-01

    Large efforts have been made over the last 40 years to increase the mechanical strength of polyacrylonitrile (PAN)-based carbon fibers (CFs) using a variety of chemical or physical protocols. In this paper, we report a new method to increase CFs mechanical strength using a slow heating rate during the carbonization process. This new approach increases both the carbon sp(3) bonding and the number of nitrogen atoms with quaternary bonding in the hexagonal carbon network. Theoretical calculations support a crosslinking model promoted by the interstitial carbon atoms located in the graphitic interlayer spaces. The improvement in mechanical performance by a controlled crosslinking between the carbon hexagonal layers of the PAN based CFs is a new concept that can contribute further in the tailoring of CFs performance based on the understanding of their microstructure down to the atomic scale. PMID:27004752

  17. A spatial neural fuzzy network for estimating pan evaporation at ungauged sites

    NASA Astrophysics Data System (ADS)

    Chung, C.-H.; Chiang, Y.-M.; Chang, F.-J.

    2011-11-01

    Evaporation is an essential reference to the management of water resources. In this study, a hybrid model that integrates a spatial neural fuzzy network with the kringing method is developed to estimate pan evaporation at ungauged sites. The adaptive network-based fuzzy inference system (ANFIS) can extract the nonlinear relationship of observations, while kriging is an excellent geostatistical interpolator. Three-year daily data collected from nineteen meteorological stations covering the whole of Taiwan are used to train and test the constructed model. The pan evaporation (Epan) at ungauged sites can be obtained through summing up the outputs of the spatially weighted ANFIS and the residuals adjusted by kriging. Results indicate that the proposed AK model (hybriding ANFIS and kriging) can effectively improve the accuracy of Epan estimation as compared with that of empirical formula. This hybrid model demonstrates its reliability in estimating the spatial distribution of Epan and consequently provides precise Epan estimation by taking geographical features into consideration.

  18. A spatial neural fuzzy network for estimating pan evaporation at ungauged sites

    NASA Astrophysics Data System (ADS)

    Chung, C.-H.; Chiang, Y.-M.; Chang, F.-J.

    2012-01-01

    Evaporation is an essential reference to the management of water resources. In this study, a hybrid model that integrates a spatial neural fuzzy network with the kringing method is developed to estimate pan evaporation at ungauged sites. The adaptive network-based fuzzy inference system (ANFIS) can extract the nonlinear relationship of observations, while kriging is an excellent geostatistical interpolator. Three-year daily data collected from nineteen meteorological stations covering the whole of Taiwan are used to train and test the constructed model. The pan evaporation (Epan) at ungauged sites can be obtained through summing up the outputs of the spatially weighted ANFIS and the residuals adjusted by kriging. Results indicate that the proposed AK model (hybriding ANFIS and kriging) can effectively improve the accuracy of Epan estimation as compared with that of empirical formula. This hybrid model demonstrates its reliability in estimating the spatial distribution of Epan and consequently provides precise Epan estimation by taking geographical features into consideration.

  19. Development of noSQL data storage for the ATLAS PanDA Monitoring System

    NASA Astrophysics Data System (ADS)

    Potekhin, M.; ATLAS Collaboration

    2012-06-01

    For several years the PanDA Workload Management System has been the basis for distributed production and analysis for the ATLAS experiment at the LHC. Since the start of data taking PanDA usage has ramped up steadily, typically exceeding 500k completed jobs/day by June 2011. The associated monitoring data volume has been rising as well, to levels that present a new set of challenges in the areas of database scalability and monitoring system performance and efficiency. These challenges are being met with a R&D effort aimed at implementing a scalable and efficient monitoring data storage based on a noSQL solution (Cassandra). We present our motivations for using this technology, as well as data design and the techniques used for efficient indexing of the data. We also discuss the hardware requirements as they were determined by testing with actual data and realistic loads.

  20. Observations of peroxyacetyl nitrate (PAN) in the upper troposphere by the Atmospheric Chemistry Experiment Fourier Transform Spectrometer (ACE-FTS)

    NASA Astrophysics Data System (ADS)

    Tereszchuk, K. A.; Moore, D. P.; Harrison, J. J.; Boone, C. D.; Park, M.; Remedios, J. J.; Randel, W. J.; Bernath, P. F.

    2013-01-01

    Peroxyacetyl nitrate (CH3CO·O2NO2, abbreviated as PAN) is a trace molecular species present in the troposphere and lower stratosphere due primarily to pollution from fuel combustion and the pyrogenic outflows from biomass burning. In the lower troposphere, PAN has a relatively short life-time and is principally destroyed within a few hours through thermolysis, but it can act as a reservoir and carrier of NOx in the colder temperatures of the upper troposphere where UV photolysis becomes the dominant loss mechanism. Pyroconvective updrafts from large biomass burning events can inject PAN into the upper troposphere and lower stratosphere (UTLS), providing a means for the long-range transport of NOx. Given the extended lifetimes at these higher altitudes, PAN is readily detectable via satellite remote sensing. A new PAN data product is now available for the Atmospheric Chemistry Experiment Fourier Transform Spectrometer (ACE-FTS) Version 3.0 data set. We report measurements of PAN in Boreal biomass burning plumes recorded during the Quantifying the impact of BOReal forest fires on Tropospheric oxidants over the Atlantic using Aircraft and Satellites (BORTAS) campaign. The retrieval method employed and errors analysis are described in full detail. The retrieved volume mixing ratio (VMR) profiles are compared to coincident measurements made by the Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) instrument on the European Space Agency (ESA) ENVIronmental SATellite (ENVISAT). Three ACE-FTS occultations containing measurements of Boreal biomass burning outflows, recorded during BORTAS, were identified as having coincident measurements with MIPAS. In each case, the MIPAS measurements demonstrated good agreement with the ACE-FTS VMR profiles for PAN. The ACE-FTS PAN data set is used to obtain zonal mean distributions of seasonal averages from ~5 to 20 km. A strong seasonality is clearly observed for PAN concentrations in the global UTLS. Since the

  1. The evolutionary history of the hominin hand since the last common ancestor of Pan and Homo

    PubMed Central

    Tocheri, Matthew W; Orr, Caley M; Jacofsky, Marc C; Marzke, Mary W

    2008-01-01

    Molecular evidence indicates that the last common ancestor of the genus Pan and the hominin clade existed between 8 and 4 million years ago (Ma). The current fossil record indicates the Pan-Homo last common ancestor existed at least 5 Ma and most likely between 6 and 7 Ma. Together, the molecular and fossil evidence has important consequences for interpreting the evolutionary history of the hand within the tribe Hominini (hominins). Firstly, parsimony supports the hypothesis that the hand of the last common ancestor most likely resembled that of an extant great ape overall (Pan, Gorilla, and Pongo), and that of an African ape in particular. Second, it provides a context for interpreting the derived changes to the hand that have evolved in various hominins. For example, the Australopithecus afarensis hand is likely derived in comparison with that of the Pan–Homo last common ancestor in having shorter fingers relative to thumb length and more proximo-distally oriented joints between its capitate, second metacarpal, and trapezium. This evidence suggests that these derived features evolved prior to the intensification of stone tool-related hominin behaviors beginning around 2.5 Ma. However, a majority of primitive features most likely present in the Pan-Homo last common ancestor are retained in the hands of Australopithecus, Paranthropus/early Homo, and Homo floresiensis. This evidence suggests that further derived changes to the hands of other hominins such as modern humans and Neandertals did not evolve until after 2.5 Ma and possibly even later than 1.5 Ma, which is currently the earliest evidence of Acheulian technology. The derived hands of modern humans and Neandertals may indicate a morphological commitment to tool-related manipulative behaviors beyond that observed in other hominins, including those (e.g. H. floresiensis) which may be descended from earlier tool-making species. PMID:18380869

  2. Change in streamflow across Eurasian pan-Arctic, contemporary trajectories and possible causes

    NASA Astrophysics Data System (ADS)

    Shiklomanov, A. I.; Streletskiy, D. A.; Groisman, P. Y.; Lammers, R. B.

    2014-12-01

    River flow is an integrated characteristic reflecting numerous environmental processes and their changes aggregated over the watershed areas. River discharge plays a significant role in the fresh-water budget of the Arctic Ocean and ocean salinity and sea ice formation are critically affected by river input. Changes in the fresh water flux to the ocean can exert significant control over global ocean circulation via the North Atlantic deepwater formation with consequences for north hemisphere climate. Thus, it is important to understand ongoing changes in streamflow across Eurasian pan-Arctic, which contributes 75% of the total terrestrial runoff to the Arctic Ocean. We analyzed variability of the annual and monthly river discharge across the Eurasian pan-Arctic drainage basin based observational records until 2012. To analyze the monthly trends in river discharge we cannot use river monitoring stations located along many large rivers due to impoundments and other human impacts within the drainage basins. An analysis of monthly discharge records longer than 50 years for rivers with no significant human impacts has been applied to identify seasonal variations and changes in the hydrological regime. The results showed significant changes in winter and summer-autumn runoff across many regions of Eurasian pan-Arctic. We hypothesize that the possible cause of increased winter river runoff is the reduction of barriers between subsurface water reservoirs and surface runoff due to improved drainage pathways as the result of increasing winter air temperature and decreasing river ice. Using new data for river ice and discharge for small and medium size rivers in Russian pan-Arctic we have checked this hypothesis using integrated analysis of data for streamflow, river ice thickness and air temperature. Preliminary results have shown significant correlation between these parameters in many basins confirming the hypothesis.

  3. Mapping the groundwater vulnerability for pollution at the pan African scale

    NASA Astrophysics Data System (ADS)

    Ouedraogo, Issoufou; Defourny, Pierre; Vanclooster, Marnik

    2015-04-01

    We mapped the pan-African intrinsic and specific vulnerability of groundwater systems towards pollution. We compiled the most recent continental scale information on soil, land use, geology, hydrogeology and climate in a Geographical Information System (GIS) at the resolution of 15kmx15km and the 1:60,000,000 scale and implemented an indicator vulnerability model based on the DRASTIC method. The intrinsic vulnerability map reveals that groundwater is highly vulnerable in Central, West and some areas of North Africa, where the watertable is very low. The intrinsic vulnerability is very low in the large sedimentary basins of the African deserts where groundwater situates in very deep aquifers. The specific vulnerability is obtained by overlaying the intrinsic vulnerability with current land use. The specific vulnerability is high in North, Central, and West Africa and strongly related to water table depths and development of agricultural activities. Subsequently, we performed a sensitivity analysis to evaluate the relative importance of each indicator parameter on groundwater vulnerability for pollution. The sensitivity analysis indicated that the removal of the vadose zone impact, the depth of the groundwater, the hydraulic conductivity and the net recharge causes a large variation in the vulnerability index. The pan African assessment of groundwater vulnerability presented in this paper is expected to be of particular value for water policy and for designing water resources management programmes. We expect, however, that this assessment can be strongly improved when pan African monitoring data on groundwater pollution will be integrated in the assessment methodology. Keywords: groundwater vulnerability, pan-Africa, DRASTIC method, Sensitivity analysis, GIS

  4. Results and insights from the NCSU Insect Museum GigaPan project

    PubMed Central

    Bertone, Matthew A.; Blinn, Robert L.; Dew1, Tanner M. StanfieldKelly J.; Seltmann, Katja C.; Deans, Andrew R.

    2012-01-01

    Abstract Pinned insect specimens stored in museum collections are a fragile and valuable resource for entomological research. As such, they are usually kept away from viewing by the public and hard to access by experts. Here we present a method for mass imaging insect specimens, using GigaPan technology to achieve highly explorable, many-megapixel panoramas of insect museum drawers. We discuss the advantages and limitations of the system, and describe future avenues of collections research using this technology. PMID:22859883

  5. Pan-Sharpening Approaches Based on Unmixing of Multispectral Remote Sensing Imagery

    NASA Astrophysics Data System (ADS)

    Palubinskas, G.

    2016-06-01

    Model based analysis or explicit definition/listing of all models/assumptions used in the derivation of a pan-sharpening method allows us to understand the rationale or properties of existing methods and shows a way for a proper usage or proposal/selection of new methods `better' satisfying the needs of a particular application. Most existing pan-sharpening methods are based mainly on the two models/assumptions: spectral consistency for high resolution multispectral data (physical relationship between multispectral and panchromatic data in a high resolution scale) and spatial consistency for multispectral data (so-called Wald's protocol first property or relationship between multispectral data in different resolution scales). Two methods, one based on a linear unmixing model and another one based on spatial unmixing, are described/proposed/modified which respect models assumed and thus can produce correct or physically justified fusion results. Earlier mentioned property `better' should be measurable quantitatively, e.g. by means of so-called quality measures. The difficulty of a quality assessment task in multi-resolution image fusion or pan-sharpening is that a reference image is missing. Existing measures or so-called protocols are still not satisfactory because quite often the rationale or assumptions used are not valid or not fulfilled. From a model based view it follows naturally that a quality assessment measure can be defined as a combination of error model residuals using common or general models assumed in all fusion methods. Thus in this paper a comparison of the two earlier proposed/modified pan-sharpening methods is performed. Preliminary experiments based on visual analysis are carried out in the urban area of Munich city for optical remote sensing multispectral data and panchromatic imagery of the WorldView-2 satellite sensor.

  6. Wind Forecasting for Yacht Racing at the 1991 Pan American Games.

    NASA Astrophysics Data System (ADS)

    Powell, Mark D.

    1993-01-01

    The U.S. Sailing Team competed successfully at the 1991 Pan American Games despite having no previous experience with the sailing conditions off Havana, Cuba. One of the key factors in the team's success was meteorological support in the form of wind climate analysis; application of sea breeze forecasting typical of the south Florida area, modified by tropical weather systems; and effective preregatta briefing.

  7. Mapping the groundwater vulnerability for pollution at the pan African scale.

    PubMed

    Ouedraogo, Issoufou; Defourny, Pierre; Vanclooster, Marnik

    2016-02-15

    We estimated vulnerability and pollution risk of groundwater at the pan-African scale. We therefore compiled the most recent continental scale information on soil, land use, geology, hydrogeology and climate in a Geographical Information System (GIS) at a resolution of 15 km × 15 km and at the scale of 1:60,000,000. The groundwater vulnerability map was constructed by means of the DRASTIC method. The map reveals that groundwater is highly vulnerable in Central and West Africa, where the watertable is very low. In addition, very low vulnerability is found in the large sedimentary basins of the African deserts where groundwater is situated in very deep aquifers. The groundwater pollution risk map is obtained by overlaying the DRASTIC vulnerability map with land use. The northern, central and western part of the African continent is dominated by high pollution risk classes and this is very strongly related to shallow groundwater systems and the development of agricultural activities. Subsequently, we performed a sensitivity analysis to evaluate the relative importance of each parameter on groundwater vulnerability and pollution risk. The sensitivity analysis indicated that the removal of the impact of vadose zone, the depth of the groundwater, the hydraulic conductivity and the net recharge causes a large variation in the mapped vulnerability and pollution risk. The mapping model was validated using nitrate concentration data of groundwater as a proxy of pollution risk. Pan-African concentration data were inferred from a meta-analysis of literature data. Results shows a good match between nitrate concentration and the groundwater pollution risk classes. The pan African assessment of groundwater vulnerability and pollution risk is expected to be of particular value for water policy and for designing groundwater resources management programs. We expect, however, that this assessment can be strongly improved when better pan African monitoring data related to groundwater

  8. Pan-Continental Droughts in North America over the Last Millennium

    NASA Technical Reports Server (NTRS)

    Cook, Benjamin I.; Smerdon, Jason E.; Seager, Richard; Cook, Edward R.

    2014-01-01

    Regional droughts are common in North America, but pan-continental droughts extending across multiple regions, including the 2012 event, are rare relative to single-region events. Here, the tree-ring-derived North American Drought Atlas is used to investigate drought variability in four regions over the last millennium, focusing on pan-continental droughts. During the Medieval Climate Anomaly (MCA), the central plains (CP), Southwest (SW), and Southeast (SE) regions experienced drier conditions and increased occurrence of droughts and the Northwest (NW) experienced several extended pluvials. Enhanced MCA aridity in the SW and CP manifested as multidecadal megadroughts. Notably, megadroughts in these regions differed in their timing and persistence, suggesting that they represent regional events influenced by local dynamics rather than a unified, continental-scale phenomena. There is no trend in pan-continental drought occurrence, defined as synchronous droughts in three or more regions. SW, CP, and SE (SW+CP+SE) droughts are the most common, occurring in 12 percent of all years and peaking in prevalence during the twelfth and thirteenth centuries; patterns involving three other regions occur in about 8 percent of years. Positive values of the Southern Oscillation index (La Nina conditions) are linked to SW, CP, and SE (SW+CP+SE) droughts and SW, CP, and NW (SW+CP+NW) droughts, whereas CP, NW, and SE (CP+NW+SE) droughts are associated with positive values of the Pacific decadal oscillation and Atlantic multidecadal oscillation. While relatively rare, pan-continental droughts are present in the paleo record and are linked to defined modes of climate variability, implying the potential for seasonal predictability. Assuming stable drought teleconnections, these events will remain an important feature of future North American hydroclimate, possibly increasing in their severity in step with other expected hydroclimate responses to increased greenhouse gas forcing.

  9. A Regional, Integrated Monitoring System for the Hydrology of the Pan-Arctic Land Mass

    NASA Technical Reports Server (NTRS)

    Serreze, Mark; Barry, Roger; Nolin, Anne; Armstrong, Richard; Zhang, Ting-Jung; Vorosmarty, Charles; Lammers, Richard; Frolking, Steven; Bromwich, David; McDonald, Kyle

    2005-01-01

    Work under this NASA contract developed a system for monitoring and historical analysis of the major components of the pan-Arctic terrestrial water cycle. It is known as Arctic-RIMS (Regional Integrated Hydrological Monitoring System for the Pan-Arctic Landmass). The system uses products from EOS-era satellites, numerical weather prediction models, station records and other data sets in conjunction with an atmosphere-land surface water budgeting scheme. The intent was to compile operational (at 1-2 month time lags) gridded fields of precipitation (P), evapotranspiration (ET), P-ET, soil moisture, soil freeze/thaw state, active layer thickness, snow extent and its water equivalent, soil water storage, runoff and simulated discharge along with estimates of non-closure in the water budget. Using "baseline" water budgeting schemes in conjunction with atmospheric reanalyses and pre-EOS satellite data, water budget fields were conjunction with atmospheric reanalyses and pre-EOS satellite data, water budget fields were compiled to provide historical time series. The goals as outlined in the original proposal can be summarized as follows: 1) Use EOS data to compile hydrologic products for the pan-Arctic terrestrial regions including snowcover/snow water equivalent (SSM/A MODIS, AMSR) and near-surface freeze/thaw dynamics (Sea Winds on QuikSCAT and ADEOS I4 SSMI and AMSR). 2) Implement Arctic-RIMS to use EOS data streams, allied fields and hydrologic models to produce allied outputs that fully characterize pan-Arctic terrestrial and aerological water budgets. 3) Compile hydrologically-based historical products providing a long-term baseline of spatial and temporal variability in the water cycle.

  10. Prior CT imaging history for patients who undergo PAN CT for acute traumatic injury

    PubMed Central

    Kenter, Jeremy; Blow, Osbert; Krall, Scott P.; Gest, Albert; Smith, Cynthia

    2015-01-01

    Objective. A single PAN scan may provide more radiation to a patient than is felt to be safe within a one-year period. Our objective was to determine how many patients admitted to the trauma service following a PAN scan had prior CT imaging within our six-hospital system. Methods. We performed a secondary analysis of a prospectively collected trauma registry. The study was based at a level-two trauma center and five affiliated hospitals, which comprise 70.6% of all Emergency Department visits within a twelve county region of southern Texas. Electronic medical records were reviewed dating from the point of trauma evaluation back to December 5, 2005 to determine evidence of prior CT imaging. Results. There were 867 patients were admitted to the trauma service between January 1, 2012 and December 31, 2012. 460 (53%) received a PAN scan and were included in the study group. The mean age of the study group was 37.7 ± 1.54 years old, 24.8% were female, and the mean ISS score was 13.4 ± 1.07. The most common mechanism of injury was motor vehicle collision (47%). 65 (14%; 95% CI [11–18]%) of the patients had at least one prior CT. The most common prior studies performed were: CT head (29%; 19–42%), CT Face (29%; 19–42%) and CT Abdomen and Pelvis (18%; 11–30%). Conclusion. Within our trauma registry, 14% of patients had prior CT imaging within our hospital system before their traumatic event and PAN scan. PMID:26056616

  11. Evaluation of Pan-Dermatophyte Nested PCR in Diagnosis of Onychomycosis▿

    PubMed Central

    Garg, Jaya; Tilak, Ragini; Singh, Sanjay; Gulati, Anil Kumar; Garg, Atul; Prakash, Pradyot; Nath, Gopal

    2007-01-01

    In this study, nested PCR using novel primers targeting the pan-dermatophyte-specific sequence of the chitin synthase 1 gene (CHS1) was compared with KOH microscopy, culture isolation, and single-round PCR for diagnosis of 152 patients with clinically suspected onychomycosis. Results indicate that nested PCR may be considered the gold standard for the diagnosis of cases of onychomycosis for which the etiological agents are dermatophytes. PMID:17699656

  12. Xe/Kr Selectivity Measurements using AgZ-PAN at Various Temperatures

    SciTech Connect

    Garn, Troy Gerry; Greenhalgh, Mitchell Randy; Watson, Tony Leroy

    2015-05-01

    In preparation for planned FY-15 Xe/Kr multi-column testing, a series of experiments were performed to determine the selectivity of Xe over Kr using the silver converted mordenite-polyacrylonitrile (AgZ-PAN) sorbent. Results from these experiments will be used for parameter selection guidelines to define test conditions for Kr gas capture purity evaluations later this year. The currently configured experimental test bed was modified by installing a new cooling apparatus to permit future multi-column testing with independent column temperature control. The modified test bed will allow for multi-column testing to facilitate a Xe separation followed by a Kr separation using engineered form sorbents. Selectivity experiments were run at temperatures of 295, 250 and 220 K. Two feed gas compositions of 1000 ppmv Xe, 150 ppmv Kr in either a He or an air balance were used. AgZ-PAN sorbent selectivity was calculated using Xe and Kr capacity determinations. AgZ-PAN sorbent selectivities for Xe over Kr of 72 were calculated at room temperature (295 K) using the feed gas with a He balance and 34 using the feed gas with an air balance. As the test temperatures were decreased the selectivity of Xe over Kr also decreased due to an increase in both Xe and Kr capacities. At 220 K, the sorbent selectivities for Xe over Kr were 22 using the feed gas with a He balance and 28 using the feed gas with an air balance. The selectivity results indicate that AgZ-PAN used in the first column of a multi-column configuration will provide adequate partitioning of Xe from Kr in the tested temperature range to produce a more pure Kr end product for collection.

  13. Shape of the piriform aperture in Gorilla gorilla, Pan troglodytes, and modern Homo sapiens: characterization and polymorphism analysis.

    PubMed

    Schmittbuhl, M; Le Minor, J M; Allenbach, B; Schaaf, A

    1998-07-01

    By using new methodologies based on automatic image analysis, the shape of the piriform aperture was analyzed in Gorilla gorilla (33 males, 13 females), Pan troglodytes (35 males, 22 females), and modern Homo sapiens (30 males, 12 females). The determination of the piriform aperture index (breadth/height) allowed the authors to demonstrate a marked elongation of the aperture in Homo compared with Gorilla and Pan. Individual characterization of the shape was possible with great precision and without ambiguity by using Fourier analysis. An absolute, interspecific partition between Gorilla, Pan, and Homo resulted from the canonical discriminant analysis of the Fourier descriptors. However, a closeness of shape between some individuals in Pan and some in Gorilla and Homo was observed, demonstrating a morphological continuum of the shape of the piriform aperture in hominoids: Pan was in intermediate position between Gorilla and Homo. Interspecific differences between Homo and the group Pan-Gorilla were explained principally by the differences in elongation (amplitude of the second harmonic) and pentagonality (amplitude of the fifth harmonic) and by differences in orientation of quadrangularity (phase of the fourth harmonic). Differences in the shape of the piriform aperture between Pan and Gorilla were explained by differences in orientation of elongation (phase of the second harmonic) and by differences in the component of triangularity (amplitude of the third harmonic). In Gorilla and Pan, the little, elongated, and relatively trapezoidal piriform aperture seems to be a shared primitive feature (plesiomorphic), whereas an elongated piriform aperture seems to be a characteristic and derived feature (apomorphic) of modern Homo sapiens. PMID:9696146

  14. Modelling the cut-off resolution parameter in the PANS method for turbulence simulation

    NASA Astrophysics Data System (ADS)

    Basara, Branislav; Hanjalic, Kemal

    2014-11-01

    The Partially-Averaged Navier-Stokes (PANS) approach, designed to resolve a part of the turbulence spectrum, adjusts seamlessly from the Reynolds-Averaged Navier-Stokes (RANS) to the Direct Numerical Solution (DNS) of the Navier-Stokes equations. This turbulence closure, derived from a RANS model, supports any filter width or scale resolution. We choose the PANS model as the basis for the present analysis of options for the model resolution parameter, but the conclusions derived are applicable to other partially resolved closure methods. Namely, in the conventional well-established PANS, the resolution parameter is obtained from the grid spacing and the integral turbulence length scale. The latter is obtained usually by summing up the resolved turbulence, while the unresolved motion is computed from the modelled equation. Several formulations have been shown to provide reliable and accurate results for many test flows. However, serious impediments have been noted in some applications such as moving domains and transient boundaries because too long calculations of the average velocity make this approach impractical. We analysed some recent alternative approaches which use the turbulent-to-mean-strain-rate time scale aimed at avoiding the on-line calculations of the resolved kinetic energy required for calculations of the input resolution parameter. Comparisons of several approaches will be shown in detail and conclusions drawn on the merits of each method.

  15. Maize pan-transcriptome provides novel insights into genome complexity and quantitative trait variation

    PubMed Central

    Jin, Minliang; Liu, Haijun; He, Cheng; Fu, Junjie; Xiao, Yingjie; Wang, Yuebin; Xie, Weibo; Wang, Guoying; Yan, Jianbing

    2016-01-01

    Gene expression variation largely contributes to phenotypic diversity and constructing pan-transcriptome is considered necessary for species with complex genomes. However, the regulation mechanisms and functional consequences of pan-transcriptome is unexplored systematically. By analyzing RNA-seq data from 368 maize diverse inbred lines, we identified almost one-third nuclear genes under expression presence and absence variation, which tend to play regulatory roles and are likely regulated by distant eQTLs. The ePAV was directly used as “genotype” to perform GWAS for 15 agronomic phenotypes and 526 metabolic traits to efficiently explore the associations between transcriptomic and phenomic variations. Through a modified assembly strategy, 2,355 high-confidence novel sequences with total 1.9 Mb lengths were found absent within reference genome. Ten randomly selected novel sequences were fully validated with genomic PCR, including another two NBS_LRR candidates potentially affect flavonoids and disease-resistance. A simulation analysis suggested that the pan-transcriptome of the maize whole kernel is approaching a maximum value of 63,000 genes, and through developing two test-cross populations and surveying several most important yield traits, the dispensable genes were shown to contribute to heterosis. Novel perspectives and resources to discover maize quantitative trait variations were provided to better understand the kernel regulation networks and to enhance maize breeding. PMID:26729541

  16. Implementation and evaluation of real-time pan-tilt-zoom camera calibration

    NASA Astrophysics Data System (ADS)

    Fung, Nicholas; David, Philip

    2008-08-01

    Pan-tilt-zoom (PTZ) cameras are frequently used in surveillance applications as they can observe a much larger region of the environment than a fixed-lens camera while still providing high-resolution imagery. The pan, tilt, and zoom parameters of a single camera may be simultaneously controlled by online users as well as automated surveillance applications. To accurately register autonomously tracked objects to a world model, the surveillance system requires accurate knowledge of camera parameters. Due to imprecision in the PTZ mechanism, these parameters cannot be obtained from PTZ control commands but must be calculated directly from camera imagery. This paper describes the efforts undertaken to implement a real-time calibration system for a stationary PTZ camera. The approach continuously tracks distinctive image feature points from frame to frame, and from these correspondences, robustly calculates the homography transformation between frames. Camera internal parameters are then calculated from these homographies. The calculations are performed by a self contained program that continually monitors images collected by the camera as it performs pan, tilt, and zoom operations. The accuracy of the calculated calibration parameters are compared to ground truth data. Problems encountered include inaccuracies in large orientation changes and long algorithm execution time.

  17. The complete mitochondrial genome of the central chimpanzee, Pan troglodytes troglodytes.

    PubMed

    Liu, Bang; Hu, Xiao-di; Gao, Li-Zhi

    2016-07-01

    This study first report the complete mitochondrial genome sequence of the central chimpanzee, Pan troglodytes troglodytes. The genome was a total of 16 556 bp in length and had a base composition of A (31.05%), G (12.95%), C (30.84%), and T (25.16%), indicating that the percentage of A + T (56.21%) is higher than G + C (43.79%). Similar to other primates, it possessed a typically conserved structure, including 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and 1 control region (D-loop). Most of these genes were found to locate on the H-strand except for the ND6 gene and 8 tRNA genes. The phylogenetic analysis showed that the P. t. troglodytes mitochondrial genome formed a cluster with the other three Pan troglodytes genomes and that the genus Pan is closely related to the genus Homo. This mitochondrial genome sequence would supply useful genetic resources to help the conservation management of primate germplasm and uncover hominoid evolution. PMID:26190079

  18. Identification of novel multitargeted PPARα/γ/δ pan agonists by core hopping of rosiglitazone

    PubMed Central

    Wang, Xue-Jiao; Zhang, Jun; Wang, Shu-Qing; Xu, Wei-Ren; Cheng, Xian-Chao; Wang, Run-Ling

    2014-01-01

    The thiazolidinedione class peroxisome proliferator-activated receptor gamma (PPARγ) agonists are restricted in clinical use as antidiabetic agents because of side effects such as edema, weight gain, and heart failure. The single and selective agonism of PPARγ is the main cause of these side effects. Multitargeted PPARα/γ/δ pan agonist development is the hot topic in the antidiabetic drug research field. In order to identify PPARα/γ/δ pan agonists, a compound database was established by core hopping of rosiglitazone, which was then docked into a PPARα/γ/δ active site to screen out a number of candidate compounds with a higher docking score and better interaction with the active site. Further, absorption, distribution, metabolism, excretion, and toxicity prediction was done to give eight compounds. Molecular dynamics simulation of the representative Cpd#1 showed more favorable binding conformation for PPARs receptor than the original ligand. Cpd#1 could act as a PPARα/γ/δ pan agonist for novel antidiabetic drug research. PMID:25422585

  19. A Pan-Arctic Assessment of High-Latitude Lake Change ~25 Years Apart

    NASA Astrophysics Data System (ADS)

    Sheng, Y.; Smith, L. C.; Li, J.; Lyons, E. A.; Wang, J.

    2011-12-01

    The Arctic and Sub-Arctic regions are the home to the world's largest quantity of terrestrial lakes. These lakes play a preeminent role in the global water cycle and balance, are sensitive to global warming, and are vital for human and animal water supply. However, they are poorly observed, and a uniform lake inventory is unavailable at the pan-Arctic scale. Though there have been studies of Arctic lake dynamics at local scales, the general picture of Arctic lake change stays unclear. A systematic regional-scale assessment of Arctic lake change in the past ~30 years is crucial for us to address "How have Arctic lakes responded to global warming?" The presentation reports a systematic effort of high-latitude (45N and north) lake inventory using recently available high-resolution satellite imagery. Since Arctic lakes are abundant in small-size classes and their seasonality varies from region to region, pan-Arctic lake mapping requires the use of thousands of cloud-free Landsat images acquired in lake-stable seasons. Nearly eight million lakes have been mapped in various landscapes of the pan-Arctic using automated lake identification algorithms with high replicability. Lake-abundant regions are selected using a systematic sampling strategy to detect decadal lake change using the mid-1970s and circa-2000 Landsat imagery. Spatial patterns of the observed lake dynamics are analyzed at regional scales and the relationship between lake abundance and size distribution is investigated.

  20. Volatile Composition of Comet C/2012 K1 (PanSTARRS)

    NASA Astrophysics Data System (ADS)

    Roth, Nathan; Gibb, Erika; Bonev, Boncho P.; DiSanti, Michael A.; Villanueva, Geronimo L.; Paganini, Lucas; Mumma, Michael J.

    2015-11-01

    On 2014 May 22 and 24 we characterized the volatile composition of the dynamically new Oort Cloud comet C/2012 K1 (PanSTARRS) using the long-slit, high resolution (λ/Δλ ≈ 25,000) infared echelle spectrograph (NIRSPEC) at the 10m Keck 2 telescope on Maunakea, HI. We detected fluorescent emission from six primary species (H2O, HCN, CH4, C2H6, CH3OH, and CO) and prompt emission from one product species (OH* - a directory proxy for H­2O). Upper limits were derived for C2H2 and H2CO. We report rotational temperatures, production rates, and mixing ratios (relative to water). Based on the inventory of comets characterized to date, mixing ratios of trace gases in C/2012 K1 (PanSTARRS) are about normal - CH3OH and C2H6 are slightly enriched, CO, CH4, HCN, and H2CO are average, and C­2H2 is depleted. I will discuss C/2012 K1 (PanSTARRS) in the context of an emerging taxonomy for comets based on volatile composition.This work is supported through the NASA Missouri Space Grant Consortium and the National Science Foundation (NSF 1211362), the NASA Astrobiology Institute through a grant to the Goddard Center for Astrobiology (811073.02.12.03.91), and the NASA Planetary Astronomy Program (811073.02.03.03.43).

  1. The Pan-American Federation of Neurological Societies (PAFNS): A New Regional Organization.

    PubMed

    Medina, Marco T; Román, Gustavo C

    2016-07-15

    The Pan-American Federation of Neurological Societies (PAFNS) was created on 15 November 2011 during the 20th World Congress of Neurology in Marrakech by virtue of the "Declaration of Morocco" signed by the WFN Latin American delegates and ratified on 5 March 2012 by delegates attending the 13th Pan-American Congress of Neurology in La Paz, Bolivia. On 20 March 2013 delegates attending the 65th Annual Meeting of the American Academy of Neurology in San Diego, California, USA, gave formal approval to the PAFNS Constitution. The neurological societies from the following countries have approved and signed the constitution as founding members and active ordinary members: Argentina, Brazil, Bolivia, Chile, Colombia, Costa Rica, Cuba, Dominican Republic, Ecuador, El Salvador, Guatemala, Honduras, Mexico, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Uruguay, and Venezuela. The Ibero-American Stroke Society (SIECV), the Commission on Latin American Affairs of the International League Against Epilepsy (ILAE) and the World Sleep Society have requested the status of Associate Members. The WFN and the American Academy of Neurology provided seed grants for the creation of the Pan-American Federation of Neurological Societies. PAFNS represents a major step for the improvement of regional neurological care, education and research. PMID:27288805

  2. Identification of novel multitargeted PPARα/γ/δ pan agonists by core hopping of rosiglitazone.

    PubMed

    Wang, Xue-Jiao; Zhang, Jun; Wang, Shu-Qing; Xu, Wei-Ren; Cheng, Xian-Chao; Wang, Run-Ling

    2014-01-01

    The thiazolidinedione class peroxisome proliferator-activated receptor gamma (PPARγ) agonists are restricted in clinical use as antidiabetic agents because of side effects such as edema, weight gain, and heart failure. The single and selective agonism of PPARγ is the main cause of these side effects. Multitargeted PPARα/γ/δ pan agonist development is the hot topic in the antidiabetic drug research field. In order to identify PPARα/γ/δ pan agonists, a compound database was established by core hopping of rosiglitazone, which was then docked into a PPARα/γ/δ active site to screen out a number of candidate compounds with a higher docking score and better interaction with the active site. Further, absorption, distribution, metabolism, excretion, and toxicity prediction was done to give eight compounds. Molecular dynamics simulation of the representative Cpd#1 showed more favorable binding conformation for PPARs receptor than the original ligand. Cpd#1 could act as a PPARα/γ/δ pan agonist for novel antidiabetic drug research. PMID:25422585

  3. Important pharmacophoric features of pan PPAR agonists: common chemical feature analysis and virtual screening.

    PubMed

    Sundriyal, Sandeep; Bharatam, Prasad V

    2009-09-01

    HipHop program was used to generate a common chemical feature hypothesis for pan Peroxisome Proliferator-Activated Receptor (PPAR) agonists. The top scoring hypothesis (hypo-1) was found to differentiate the pan agonists (actives) from subtype-specific and dual PPAR agonists (inactives). The importance of individual features in hypo-1 was assessed by deleting a particular feature to generate a new hypothesis and observing its discriminating ability between 'actives' and 'inactives'. Deletion of aromatic features AR-1 (hypo-1b), AR-2 (hypo-1e) and a Hydrophobic feature HYD-1 (hypo-1c) individually did not affect the discriminating power of the hypo-1 significantly. However, deletion of a Hydrogen Bond Acceptor (HBA) feature (hypo-1f) in the hydrophobic tail group was found to be highly detrimental for the specificity of hypo-1 leading to high hit rate of 'inactives'. Since hypo-1 did not produce any useful hits from the database search, hypo-1b, hypo-1c and hypo-1e were used for virtual screening leading to the identification of new potential pan PPAR ligands. The docking studies were used to predict the binding pose of the proposed molecules in PPARgamma active site. PMID:19268404

  4. Maize pan-transcriptome provides novel insights into genome complexity and quantitative trait variation.

    PubMed

    Jin, Minliang; Liu, Haijun; He, Cheng; Fu, Junjie; Xiao, Yingjie; Wang, Yuebin; Xie, Weibo; Wang, Guoying; Yan, Jianbing

    2016-01-01

    Gene expression variation largely contributes to phenotypic diversity and constructing pan-transcriptome is considered necessary for species with complex genomes. However, the regulation mechanisms and functional consequences of pan-transcriptome is unexplored systematically. By analyzing RNA-seq data from 368 maize diverse inbred lines, we identified almost one-third nuclear genes under expression presence and absence variation, which tend to play regulatory roles and are likely regulated by distant eQTLs. The ePAV was directly used as "genotype" to perform GWAS for 15 agronomic phenotypes and 526 metabolic traits to efficiently explore the associations between transcriptomic and phenomic variations. Through a modified assembly strategy, 2,355 high-confidence novel sequences with total 1.9 Mb lengths were found absent within reference genome. Ten randomly selected novel sequences were fully validated with genomic PCR, including another two NBS_LRR candidates potentially affect flavonoids and disease-resistance. A simulation analysis suggested that the pan-transcriptome of the maize whole kernel is approaching a maximum value of 63,000 genes, and through developing two test-cross populations and surveying several most important yield traits, the dispensable genes were shown to contribute to heterosis. Novel perspectives and resources to discover maize quantitative trait variations were provided to better understand the kernel regulation networks and to enhance maize breeding. PMID:26729541

  5. Identification of Palmitoylated Transitional Endoplasmic Reticulum ATPase by Proteomic Technique and Pan Antipalmitoylation Antibody.

    PubMed

    Fang, Caiyun; Zhang, Xiaoqin; Zhang, Lei; Gao, Xing; Yang, Pengyuan; Lu, Haojie

    2016-03-01

    Protein palmitoylation plays a significant role in a wide range of biological processes such as cell signal transduction, metabolism, apoptosis, and carcinogenesis. For high-throughput analysis of protein palmitoylation, approaches based on the acyl-biotin exchange or metabolic labeling of azide/alkynyl-palmitate analogs are commonly used. No palmitoylation antibody has been reported. Here, the palmitoylated proteome of human colon cancer cell lines SW480 was analyzed via a TS-6B-based method. In total, 151 putative palmitoylated sites on 92 proteins, including 100 novel sites, were identified. Except for 3 known palmitoylated transmembrane proteins, ATP1A1, ZDHHC5, and PLP2, some important proteins including kinases, ion channels, receptors, and cytoskeletal proteins were also identified, such as CLIC1, PGK1, PPIA, FKBP4, exportin-2, etc. More importantly, the pan antipalmitoylation antibody was developed and verified for the first time. Our homemade pan antipalmitoylation antiserum could differentiate well protein palmitoylation from mouse brain membrane fraction and SW480 cells, which affords a new technique for analyzing protein palmitoylation by detecting the palmitic acid moiety directly. Furthermore, the candidate protein transitional endoplasmic reticulum ATPase (VCP) identified in SW480 cells was validated to be palmitoylated by Western blotting with anti-VCP antibody and the homemade pan antipalmitoylation antibody. PMID:26865113

  6. Small Molecule Pan-dengue and West Nile Virus NS3 Protease Inhibitors

    PubMed Central

    Cregar-Hernandez, Lynne; Jiao, Guan-Sheng; Johnson, Alan T.; Lehrer, Axel T.; Wong, Teri Ann S.; Margosiak, Stephen A.

    2011-01-01

    Background Dengue fever, dengue hemorrhagic fever, and dengue shock syndrome are caused by infections with any of the four serotypes of the dengue virus (DENV) and are an increasing global health risk. The related West Nile Virus (WNV) causes significant morbidity and mortality as well and continues to be a threat in endemic areas. Currently no FDA approved vaccines or therapeutics are available to prevent or treat any of these infections. Like the other members of the Flaviviridae family, DENV and WNV encode a protease (NS3) which is essential for viral replication and therefore is a promising target for developing therapies to treat dengue and West Nile infections. Methods Flaviviral protease inhibitors were identified and biologically characterized for mechanism of inhibition and DENV anti-viral activity. Results A guanidinylated 2, 5-dideoxystreptamine class of compounds was identified that competitively inhibited the NS3 protease from DENV(1-4) and WNV with IC50 values in the 1-70 μM range. Cytotoxicity was low; however, antiviral activity versus DENV-2 on VERO cells was not detectable. Conclusions This class of compounds is the first to demonstrate competitive pan-dengue and WNV NS3 protease inhibition and, given the sequence conservation among flavivirus NS3 proteins, suggests that developing a pan-dengue or possibly pan-flavivirus therapeutic is feasible. PMID:21566267

  7. In-silico Metabolome Target Analysis Towards PanC-based Antimycobacterial Agent Discovery.

    PubMed

    Khoshkholgh-Sima, Baharak; Sardari, Soroush; Izadi Mobarakeh, Jalal; Khavari-Nejad, Ramezan Ali

    2015-01-01

    Mycobacterium tuberculosis, the main cause of tuberculosis (TB), has still remained a global health crisis especially in developing countries. Tuberculosis treatment is a laborious and lengthy process with high risk of noncompliance, cytotoxicity adverse events and drug resistance in patient. Recently, there has been an alarming rise of drug resistant in TB. In this regard, it is an unmet need to develop novel antitubercular medicines that target new or more effective biochemical pathways to prevent drug resistant Mycobacterium. Integrated study of metabolic pathways through in-silico approach played a key role in antimycobacterial design process in this study. Our results suggest that pantothenate synthetase (PanC), anthranilate phosphoribosyl transferase (TrpD) and 3-isopropylmalate dehydratase (LeuD) might be appropriate drug targets. In the next step, in-silico ligand analysis was used for more detailed study of chemical tractability of targets. This was helpful to identify pantothenate synthetase (PanC, Rv3602c) as the best target for antimycobacterial design procedure. Virtual library screening on the best ligand of PanC was then performed for inhibitory ligand design. At the end, five chemical intermediates showed significant inhibition of Mycobacterium bovis with good selectivity indices (SI) ≥10 according to Tuberculosis Antimicrobial Acquisition & Coordinating Facility of US criteria for antimycobacterial screening programs. PMID:25561926

  8. [Evaluation of a Neuropsychiatric Disorder: From PANDAS to PANS and CANS].

    PubMed

    Baytunca, Muharrem Burak; Donuk, Tuğba; Erermiş, Serpil

    2016-01-01

    PANDAS (Pediatric Autoimmune Neuropsychiatric Disorders Associated with Streptococcal infections) syndrome is a disorder seen before adolescence that possesses an abrupt onset of obsessive-compulsive disorder symptoms and/or tics. Swedo and colleagues defined this disorder in 1998 as a syndrome related to Group A streptoccoccus (GAS) infection with neurological issues, such as motor hyperactivation and choreiform movements. The progress of the disorder may be described as wax-and-waning, apart from abrupt onset, and this relapse and remission course is associated with exacerbating infections, according to the creators of PANDAS syndrome. Ruling out of Rheumatoid Fever and Sydenham's Chorea was a necessity for making a proper diagnosis. Since the recognition of this syndrome, clinicians encountered many children who could not fulfill all 5 criteria, which must be met for PANDAS diagnosis. In addition, due to literature showing failure and lack of strong evidence of a major role of GAS, the newly-defined categories PANS (Pediatric Acute-onset Neuropsychiatric Syndrome) and CANS (Childhood Acute Neuropsychiatric Syndrome) were created to encompass those of "almost met" non-PANDAS cases. PANS and CANS include concurrent significant psychiatric symptoms with abrupt onset of OCD symptoms and/or tics but do not require identification of any infection agent, immune dysfunction, or enviromental precipitants. In this paper, we aimed to discuss PANS/ CANS, alterations of PANDAS, and diagnoses in which "almost met" PANDAS patients should be classified on the basis of a case who developed an abrupt onset of anxiety, obsessions, and vocal tics. PMID:27370066

  9. A reconsideration of Pan African orogenic cycle in the Anti-Atlas Mountains, Morocco

    NASA Astrophysics Data System (ADS)

    Hefferan, Kevin; Soulaimani, Abderrahmane; Samson, Scott D.; Admou, Hassan; Inglis, Jeremy; Saquaque, Ali; Latifa, Chaib; Heywood, Neil

    2014-10-01

    For over 50 years the Pan African orogeny has been recognized as a Neoproterozoic tectonothermal episode affecting West Africa 800-550 Ma. As such, the Pan African events are similar to the Appalachian orogenic cycle extending from ∼1100 to 250 Ma and the Cordilleran orogenic cycle of 350 Ma to the present. A significant difference is that the Appalachian orogenic cycle has long been recognized as consisting of separate Grenville, Taconic, Acadian and Alleghenian orogenies. Similarly, the Cordilleran orogenic cycle consists of distinct Antler, Sonoma, Nevadan, Sevier, Laramide and ongoing Cascadian-Andean orogenies. Failure to distinguish individual tectonic events in the Anti-Atlas Mountains has been attributable to the dearth of radiometric dates in this region. Since 2000, precision geochronologic dating in the Anti-Atlas Mountains, Morocco, has provided a means by which it is now appropriate to designate a Pan African orogenic cycle consisting of separate distinct orogenic events. We herein propose the following distinct orogenic events in the Anti-Atlas Mountains of Morocco: Iriri-Tichibanine orogeny (760-700 Ma), Bou Azzer orogeny (680-640 Ma) and the WACadomian orogeny (620-555 Ma).

  10. Simulating soil freeze/thaw dynamics with an improved pan-Arctic water balance model

    NASA Astrophysics Data System (ADS)

    Rawlins, M. A.; Nicolsky, D. J.; McDonald, K. C.; Romanovsky, V. E.

    2013-12-01

    The terrestrial Arctic water cycle is strongly influenced by the presence of permafrost, which is at present degrading as a result of warming. In this study, we describe improvements to the representation of processes in the pan-Arctic Water Balance Model (PWBM) and evaluate simulated soil temperature at four sites in Alaska and active-layer thickness (ALT) across the pan-Arctic drainage basin. Model improvements include new parameterizations for thermal and hydraulic properties of organic soils; an updated snow model, which accounts for seasonal changes in density and thermal conductivity; and a new soil freezing and thawing model, which simulates heat conduction with phase change. When compared against observations across Alaska within differing landscape vegetation conditions in close proximity to one another, PWBM simulations show no systematic soil temperature bias. Simulated temperatures agree well with observations in summer. In winter, results are mixed, with both positive and negative biases noted at times. In two pan-Arctic simulations forced with atmospheric reanalysis, the model captures the mean in observed ALT, although predictability as measured by correlation is limited. The geographic pattern in northern hemisphere permafrost area is well estimated. Simulated permafrost area differs from observed extent by 7 and 17% for the two model runs. Results of two simulations for the periods 1996-1999 and 2066-2069 for a single grid cell in central Alaska illustrate the potential for a drying of soils in the presence of increases in ALT, annual total precipitation, and winter snowfall.

  11. Immunomediated Pan-cancer Regulation Networks are Dominant Fingerprints After Treatment of Cell Lines with Demethylation

    PubMed Central

    El Baroudi, Mariama; Cinti, Caterina; Capobianco, Enrico

    2016-01-01

    Pan-cancer studies are particularly relevant not only for addressing the complexity of the inherently observed heterogeneity but also for identifying clinically relevant features that may be common to the cancer types. Immune system regulations usually reveal synergistic modulation with other cancer mechanisms and in combination provide insights on possible advances in cancer immunotherapies. Network inference is a powerful approach to decipher pan-cancer systems dynamics. The methodology proposed in this study elucidates the impacts of epigenetic treatment on the drivers of complex pan-cancer regulation circuits involving cell lines of five cancer types. These patterns were observed from differential gene expression measurements following demethylation with 5-azacytidine. Networks were built to establish associations of phenotypes at molecular level with cancer hallmarks through both transcriptional and post-transcriptional regulation mechanisms. The most prominent feature that emerges from our integrative network maps, linking pathway landscapes to disease and drug-target associations, refers primarily to a mosaic of immune-system crosslinked influences. Therefore, characteristics initially evidenced in single cancer maps become motifs well summarized by network cores and fingerprints. PMID:27147816

  12. Detection of arecoline by simple high-performance thin-layer chromatographic method in Indian nontobacco pan masala

    PubMed Central

    Adhikari, Anjan; Hazra, Alok Kumar; Sur, Tapas Kumar

    2015-01-01

    Chewing the habit of blended pan masala containing areca nut with or without tobacco is a common practice in the Indian subcontinent. Arecoline, a pyridine alkaloid presence in areca nut alarmed for oral carcinogenesis and strictly prohibited in the western world. However, in India using blended pan masala is very popular among young and old individuals. In this context, we aimed to detect arecoline in Indian blended nontobacco pan masala sold in Kolkata using a simple densitometric high-performance thin-layer chromatographic (HPTLC) method and for alarming their use in common people. Eleven popularly Indian blended nontobacco pan masala were collected from the territory of Kolkata and isolated arecoline, following solvent extraction method derived for pyridine alkaloid. The quantitative analysis of arecoline was measured using automated software-based HPTLC instruments and validated the method according to International Conference on Harmonization guidelines. Arecoline was detected in all 11 blended nontobacco pan masala samples in a range of minimum 130 to maximum 415 μg/g dry samples. Arecoline is hazardous carcinogenic compound, so the use of Indian blended nontobacco pan masala should be restricted. Further, the method was found suitable for routine quantitative analysis of arecoline in areca nut containing substances. PMID:26605162

  13. The PanCam Calibration Target (PCT) and multispectral image processing for the ExoMars 2018 mission

    NASA Astrophysics Data System (ADS)

    Barnes, D.; Wilding, M.; Gunn, M.; Tyler, L.; Pugh, S.; Coates, A.; Griffiths, A.; Cousins, C.; Schmitz, N.; Paar, G.

    2011-10-01

    The Panoramic Camera (PanCam) instrument for the ESA/NASA 2018 ExoMars mission is designed to be the 'eyes' of the Mars rover and is equipped with two wide angle multispectral cameras (WACs) from MSSL, and a focusable High Resolution Camera (HRC) from DLR. To achieve its science role within the ExoMars mission, the PanCam will generate terrain reflectance spectra to help identify the mineralogy of the Martian surface, and generate true-colour images of the Martian environment. The PanCam Calibration Target (PCT) is an essential component for the science operations of the PanCam instrument. Its purpose is to allow radiometric calibration and to support geometric calibration check-out of the PanCam instrument during the mission. Unlike other camera calibration targets flown to Mars, the PCT target regions are being made from stained glass. The paper describes the work undertaken during the early build and testing of the PCT, together with results from the baseline algorithms that have been designed and implemented to process the multispectral PanCam images.

  14. Removal of aluminium from aqueous solutions using PAN-based adsorbents: characterisation, kinetics, equilibrium and thermodynamic studies.

    PubMed

    Aly, Zaynab; Graulet, Adrien; Scales, Nicholas; Hanley, Tracey

    2014-03-01

    Economic adsorbents in bead form were fabricated and utilised for the adsorption of Al(3+) from aqueous solutions. Polyacrylonitrile (PAN) beads, PAN powder and the thermally treated PAN beads (250 °C/48 h/Ar and 600 °C/48 h/Ar-H2) were characterised using different techniques including Fourier transform infrared spectroscopy, X-ray diffraction, specific surface analysis (Brunauer-Emmett-Teller), thermogravimetric analysis as well as scanning electron microscopy. Effects of pH, contact time, kinetics and adsorption isotherms at different temperatures were investigated in batch mode experiments. Aluminium kinetic data best fit the Lagergren pseudo-second-order adsorption model indicating a one-step, surface-only, adsorption process with chemisorption being the rate limiting step. Equilibrium adsorption data followed a Langmuir adsorption model with fairly low monolayer adsorption capacities suitable for freshwater clean-up only. Various constants including thermodynamic constants were evaluated from the experimental results obtained at 20, 40 and 60 °C. Positive values of ΔH° indicated that the adsorption of Al(3+) onto all three adsorbents was endothermic with less energy input required for PAN powder compared to PAN beads and low-temperature thermally treated PAN. Negative ΔG° values indicated that the aluminium adsorption process was spontaneous for all adsorbents examined. PMID:24297464

  15. Detection of arecoline by simple high-performance thin-layer chromatographic method in Indian nontobacco pan masala.

    PubMed

    Adhikari, Anjan; Hazra, Alok Kumar; Sur, Tapas Kumar

    2015-01-01

    Chewing the habit of blended pan masala containing areca nut with or without tobacco is a common practice in the Indian subcontinent. Arecoline, a pyridine alkaloid presence in areca nut alarmed for oral carcinogenesis and strictly prohibited in the western world. However, in India using blended pan masala is very popular among young and old individuals. In this context, we aimed to detect arecoline in Indian blended nontobacco pan masala sold in Kolkata using a simple densitometric high-performance thin-layer chromatographic (HPTLC) method and for alarming their use in common people. Eleven popularly Indian blended nontobacco pan masala were collected from the territory of Kolkata and isolated arecoline, following solvent extraction method derived for pyridine alkaloid. The quantitative analysis of arecoline was measured using automated software-based HPTLC instruments and validated the method according to International Conference on Harmonization guidelines. Arecoline was detected in all 11 blended nontobacco pan masala samples in a range of minimum 130 to maximum 415 μg/g dry samples. Arecoline is hazardous carcinogenic compound, so the use of Indian blended nontobacco pan masala should be restricted. Further, the method was found suitable for routine quantitative analysis of arecoline in areca nut containing substances. PMID:26605162

  16. Seated occupant interactions with seat backrest and pan, and biodynamic responses under vertical vibration

    NASA Astrophysics Data System (ADS)

    Rakheja, S.; Stiharu, I.; Zhang, H.; Boileau, P.-É.

    2006-12-01

    The relative interactions of the seated occupants with an inclined backrest were investigated in terms of apparent mass (APMS) responses at the two driving-points formed by the buttock-seat pan and the upper body-backrest under exposure to broad-band and road-measured vertical vibration. The measurements were performed using 24 adult subjects seated with full contact with the back support and two different positions of the hands (in lap and on steering wheel), while exposed to three different levels of broad band (0.25, 0.5 and 1.0 m/s 2 rms acceleration) vibration in the 0.5-40 Hz frequency range, and a track-measured vibration spectrum (1.07 m/s 2 rms acceleration). The forces developed on the seat pan and the backrest in directions normal to the supporting surfaces were measured to derive the APMS responses at both the driving-points. The results showed significant interactions of the upper body with the back support in a direction normal to the backrest, even though the vibration is applied along the vertical axis. At low frequencies, the backrest APMS magnitude was smaller than that measured at the seat pan, but it either exceeded or approached that of the seat pan APMS in the vicinity of the primary resonant frequencies. The results also suggested considerable effect of the hands position on the APMS magnitudes measured at both the driving-points. The effects of variations in the excitation type and magnitude, considered in this study, were observed to be small compared to those caused by the hands position and individual body masses. Owing to the strong effects of the body mass on the measured APMS responses at both driving-points, a total of 8 target data sets were identified corresponding to four mass groups (<60, 60.6-70, 70.5-80 and >80 kg) and two hands positions for formulating mechanical equivalent models. The model parameters identified for the target functions suggested that the models mass, stiffness and damping parameters increase with increasing

  17. Dual and pan-peroxisome proliferator-activated receptors (PPAR) co-agonism: the bezafibrate lessons.

    PubMed

    Tenenbaum, Alexander; Motro, Michael; Fisman, Enrique Z

    2005-01-01

    There are three peroxisome proliferator-activated receptors (PPARs) subtypes which are commonly designated PPAR alpha, PPAR gamma and PPAR beta/delta. PPAR alpha activation increases high density lipoprotein (HDL) cholesterol synthesis, stimulates "reverse" cholesterol transport and reduces triglycerides. PPAR gamma activation results in insulin sensitization and antidiabetic action. Until recently, the biological role of PPAR beta/delta remained unclear. However, treatment of obese animals by specific PPAR delta agonists results in normalization of metabolic parameters and reduction of adiposity. Combined treatments with PPAR gamma and alpha agonists may potentially improve insulin resistance and alleviate atherogenic dyslipidemia, whereas PPAR delta properties may prevent the development of overweight which typically accompanies "pure" PPAR gamma ligands. The new generation of dual-action PPARs--the glitazars, which target PPAR-gamma and PPAR-alpha (like muraglitazar and tesaglitazar) are on deck in late-stage clinical trials and may be effective in reducing cardiovascular risk, but their long-term clinical effects are still unknown. A number of glitazars have presented problems at a late stage of clinical trials because of serious side-effects (including ragaglitazar and farglitazar). The old and well known lipid-lowering fibric acid derivative bezafibrate is the first clinically tested pan--(alpha, beta/delta, gamma) PPAR activator. It is the only pan-PPAR activator with more than a quarter of a century of therapeutic experience with a good safety profile. Therefore, bezafibrate could be considered (indeed, as a "post hoc" understanding) as an "archetype" of a clinically tested pan-PPAR ligand. Bezafibrate leads to considerable raising of HDL cholesterol and reduces triglycerides, improves insulin sensitivity and reduces blood glucose level, significantly lowering the incidence of cardiovascular events and new diabetes in patients with features of metabolic

  18. Internal boundary layer devleopment over a salt pan: Measured and modelled dust emissions

    NASA Astrophysics Data System (ADS)

    King, J.; Wiggs, G.; Haustein, K.; Eckardt, F. D.; Thomas, D. S. G.; Washington, R.

    2014-12-01

    A key component of a dust emission scheme is the threshold for sediment transport, which is a function of soil size distribution, soil moisture, air and soil particle density, and surface roughness. For a particular region or landform that is not vegetated the variable that controls the transport threshold the most is soil moisture. This is because it is assumed that the other components vary little (air and soil particle densities) or are kept constant (soil size distribution and surface roughness). This puts the emphasis very heavily on soil moisture and wind stress as the key drivers of dust emission for specific landforms and dust emission schemes. Dust emission measurements were undertaken in 2011 on Sua Pan in Botswana, a large, flat, unvegetated salt pan, as part of the Dust Observation for Models (DO4 Models) campaign. The observations consisted of 11 climate stations placed within a 144 km2. Out of the measured and calculated erodibility parameters responsible for predicting transport threshold within current schemes, surface soil moisture and aerodynamic roughness length varied the most over the duration of the project and spatially across the pan. In 2011, the pan was drying from extensive flooding and rainfall in the previous wet season. Within the dry winter season months of June through September the dominantly eastern winds dried the pan developing a directional increase in aerodynamic roughness length over time. This cumulated in a region of maximum roughness length with the highest potential for dust emissions. In some cases, the aerodynamic roughness length of the bare soil increased by three orders of magnitude within the three month period. This increase in roughness almost doubles the modelled threshold shear velocity required for this surface to be emissive. The temporal and spatial variability of the calculated transport threshold is explored with observed data and compared with the modelled transport threshold for this region for the

  19. PanFP: Pangenome-based functional profiles for microbial communities

    SciTech Connect

    Jun, Se -Ran; Hauser, Loren John; Schadt, Christopher Warren; Gorin, Andrey A.; Robeson, Michael S.

    2015-09-26

    For decades there has been increasing interest in understanding the relationships between microbial communities and ecosystem functions. Current DNA sequencing technologies allows for the exploration of microbial communities in two principle ways: targeted rRNA gene surveys and shotgun metagenomics. For large study designs, it is often still prohibitively expensive to sequence metagenomes at both the breadth and depth necessary to statistically capture the true functional diversity of a community. Although rRNA gene surveys provide no direct evidence of function, they do provide a reasonable estimation of microbial diversity, while being a very cost effective way to screen samples of interest for later shotgun metagenomic analyses. However, there is a great deal of 16S rRNA gene survey data currently available from diverse environments, and thus a need for tools to infer functional composition of environmental samples based on 16S rRNA gene survey data. As a result, we present a computational method called pangenome based functional profiles (PanFP), which infers functional profiles of microbial communities from 16S rRNA gene survey data for Bacteria and Archaea. PanFP is based on pangenome reconstruction of a 16S rRNA gene operational taxonomic unit (OTU) from known genes and genomes pooled from the OTU s taxonomic lineage. From this lineage, we derive an OTU functional profile by weighting a pangenome s functional profile with the OTUs abundance observed in a given sample. We validated our method by comparing PanFP to the functional profiles obtained from the direct shotgun metagenomic measurement of 65 diverse communities via Spearman correlation coefficients. These correlations improved with increasing sequencing depth, within the range of 0.8 0.9 for the most deeply sequenced Human Microbiome Project mock community samples. PanFP is very similar in performance to another recently released tool, PICRUSt, for almost all of survey data analysed here. But, our

  20. PanFP: Pangenome-based functional profiles for microbial communities

    DOE PAGESBeta

    Jun, Se -Ran; Hauser, Loren John; Schadt, Christopher Warren; Gorin, Andrey A.; Robeson, Michael S.

    2015-09-26

    For decades there has been increasing interest in understanding the relationships between microbial communities and ecosystem functions. Current DNA sequencing technologies allows for the exploration of microbial communities in two principle ways: targeted rRNA gene surveys and shotgun metagenomics. For large study designs, it is often still prohibitively expensive to sequence metagenomes at both the breadth and depth necessary to statistically capture the true functional diversity of a community. Although rRNA gene surveys provide no direct evidence of function, they do provide a reasonable estimation of microbial diversity, while being a very cost effective way to screen samples of interestmore » for later shotgun metagenomic analyses. However, there is a great deal of 16S rRNA gene survey data currently available from diverse environments, and thus a need for tools to infer functional composition of environmental samples based on 16S rRNA gene survey data. As a result, we present a computational method called pangenome based functional profiles (PanFP), which infers functional profiles of microbial communities from 16S rRNA gene survey data for Bacteria and Archaea. PanFP is based on pangenome reconstruction of a 16S rRNA gene operational taxonomic unit (OTU) from known genes and genomes pooled from the OTU s taxonomic lineage. From this lineage, we derive an OTU functional profile by weighting a pangenome s functional profile with the OTUs abundance observed in a given sample. We validated our method by comparing PanFP to the functional profiles obtained from the direct shotgun metagenomic measurement of 65 diverse communities via Spearman correlation coefficients. These correlations improved with increasing sequencing depth, within the range of 0.8 0.9 for the most deeply sequenced Human Microbiome Project mock community samples. PanFP is very similar in performance to another recently released tool, PICRUSt, for almost all of survey data analysed here. But

  1. Interpretation of PAN, acetone and acetylene measurements from the MIPAS-E

    NASA Astrophysics Data System (ADS)

    Moore, D. P.; Remedios, J. J.; Parker, R. J.

    2009-04-01

    Emissions of anthropogenic pollution, from biomass burning events in particular, result in the injection of a wide range of carbon compounds into the atmosphere. Carbon monoxide (CO), methane (CH4) and volatile organic compounds (VOCs) are released in significant amounts, affecting both the oxidation capacity of the troposphere and ozone production. Upper troposphere (UT) measurements of PAN, acetone and acetylene have, in the past, been generally limited to sporadic in situ sampling during specialised campaign periods. The recent rapid progress in both the detection and retrieval of many VOC species from spaceborne instrumentation has been large. It has recently been established that the observation of the global distribution of VOCs in the UT can be made by measurements provided by instruments such as the Michelson Interferometer for Passive Atmospheric Sounding onboard ENVISAT (MIPAS-E) or the Atmospheric Chemistry Experiment (ACE) onboard SCISAT-1. In this work, we discuss the ability of MIPAS-E to provide new global measurements of acetone in the UT. We also describe both the distribution and seasonality observed in UT PAN volume mixing ratios (vmrs). From the MIPAS-E acetylene measurements, we analyse the extent and magnitude of the chemical isolation observed over the Middle East during August 2003. We show that this enhancement is due to fast westward transport from Asia via the Easterly Jet associated with the Asian monsoon anticyclone. A full error analysis is carried out for each of the three gases we analyse. Previous work has shown that characteristic infrared signatures of PAN, acetone and acetylene can be detected in MIPAS-E thermal emission spectra, with the 787-790 cm-1, 1216-1218 cm-1 and 776.0-776.15 cm-1 spectral ranges respectively being particularly sensitive to changes in each of the gases. We invert the measured MIPAS-E spectra into vmrs using an independent offline-retrieval scheme based on the optimal estimation approach which was

  2. Integrating the markers Pan I and haemoglobin with the genetic linkage map of Atlantic cod (Gadus morhua)

    PubMed Central

    2010-01-01

    Background Haemoglobin (Hb) and pantophysin (Pan I) markers have been used intensively in population studies of Atlantic cod (Gadus morhua) and in the analysis of traits such as temperature tolerance, growth characteristics and sexual maturation. We used an Illumina GoldenGate panel and the KASPar SNP genotyping system to analyse SNPs in three Atlantic cod families, one of which was polymorphic at the Hb β1 locus, and to generate a genetic linkage map integrating Pan I and multiple Hb loci. Findings Data generated allowed the mapping of nine Hb loci, the Pan I locus, and other 122 SNPs onto an existing linkage genetic map for Atlantic cod. Four Hb genes (i.e. α1, α4, β1 and β5) have been mapped on linkage group (LG) 2 while the other five (i.e. α2, α3, β2, β3 and β4) were placed on LG18. Pan I was mapped on LG 1 using a newly developed KASPar assay for a SNP variable only in Pan IA allelic variants. The new linkage genetic map presented here comprises 1046 SNPs distributed between 23 linkage groups, with a length of 1145.6 cM. A map produced by forcing additional loci, resulting in a reduced goodness-of-fit for mapped markers, allowed the mapping of a total of 1300 SNPs. Finally, we compared our genetic linkage map data with the genetic linkage map data produced by a different group and identified 29 shared SNPs distributed on 10 different linkage groups. Conclusions The genetic linkage map presented here incorporates the marker Pan I, together with multiple Hb loci, and integrates genetic linkage data produced by two different research groups. This represents a useful resource to further explore if Pan I and Hbs or other genes underlie quantitative trait loci (QTL) for temperature sensitivity/tolerance or other phenotypes. PMID:20946683

  3. Shape of the orbital opening: individual characterization and analysis of variability in modern humans, Gorilla gorilla, and Pan troglodytes.

    PubMed

    Schmittbuhl, M; Le Minor, J M; Allenbach, B; Schaaf, A

    1999-05-01

    The description of the human orbital shape is principally qualitative in the classical literature, and characterised by adjectives such as circular, rectangular or quadrangular. In order to provide a precise quantification and interpretation of this shape, a study based on automatic image analysis and Fourier analysis was carried out on 45 human skulls (30 males, 15 females), and for comparison on 61 skulls of Gorilla gorilla (40 males, 21 females), and 34 skulls of Pan troglodytes (20 males, 14 females). Sexual dimorphism in the shape of the orbital opening was not demonstrated. Its dominant morphological features could be characterized by Fourier analysis; elliptical elongation and quadrangularity were dominant morphological features of the shape of the orbital opening in the three species. Elliptical elongation was more marked in humans and Pan, whereas quadrangularity was particularly emphasized in Gorilla. An intraspecific variability of the shape of the orbital opening existed in humans, Gorilla and Pan, and seemed close in the three species. Interspecific partition between humans, Gorilla and Pan was demonstrated despite the variability observed in the three species studied. Interspecific differences between Gorilla and the Pan-humans group were principally explained by the differences in quadrangularity, and by differences in orientation of triangularity and pentagonality. Differences in the shape of the orbital opening between humans and Pan were principally explained by differences in hexagonality, and by differences in orientation of quadrangularity. A closeness of shape between some humans and some individuals in Pan and, to a lesser degree, with some individuals in Gorilla was observed, demonstrating the existence of a morphological continuum of the shape of the orbital opening in hominoids. PMID:10363113

  4. Effect of Temperature and Pressure on Ionic Conductivity of PAN-Based Polymer Electrolytes Containing Inorganic Salts

    NASA Astrophysics Data System (ADS)

    Ahmad, A.; Isa, K. B. Md.; Osman, Z.

    2010-07-01

    The conducting polymer electrolyte films consisting polyacrylonitrile (PAN) as the host polymer, ethylene carbonate (EC) as a plasticizer, lithium triflate (LiCF3SO3) and sodium triflate (NaCF3SO3) as inorganic salts were prepared by the solution cast technique. The pure PAN film was prepared as a reference. The ionic conductivity for the films is characterized using impedance spectroscopy. The room temperature conductivity for the PAN+24 wt.%EC film, PAN+26 wt.%LiCF3SO3 film, the PAN+24 wt.%NaCF3SO3 film is 3.43×10-11 S cm-1, 3.04×10-4 S cm-1, and 7.13×10-4 S cm-1, respectively. On addition of plasticizer, the room temperature of PAN+LiCF3SO3 and PAN+NaCF3SO3 films increases by one order of magnitude. The conductivity-temperature and conductivity-pressure dependence studies are then performed on the highest conducting film from the unplasticized and plasticized systems in the temperature and pressure range between 303 K and 373 K and 0.01 MPa and 0.09 MPa, respectively. The conductivity-temperature studies indicate the activation energy, Ea for all system decrease with the increase of the conductivity. The activation volume, ΔV* for each system can be determined from the plot of ln σ versus pressure. It can be observed that the ΔV* is decreased as the conductivity increased. This result can be explained in term of free volume.

  5. A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands.

    PubMed

    Uchiyama, Ikuo; Albritton, Jacob; Fukuyo, Masaki; Kojima, Kenji K; Yahara, Koji; Kobayashi, Ichizo

    2016-01-01

    Genomes of a given bacterial species can show great variation in gene content and thus systematic analysis of the entire gene repertoire, termed the pan-genome, is important for understanding bacterial intra-species diversity, population genetics, and evolution. Here, we analyzed the pan-genome from 30 completely sequenced strains of the human gastric pathogen Helicobacter pylori belonging to various phylogeographic groups, focusing on 991 accessory (not fully conserved) orthologous groups (OGs). We developed a method to evaluate the mobility of genes within a genome, using the gene order in the syntenically conserved regions as a reference, and classified the 991 accessory OGs into five classes: Core, Stable, Intermediate, Mobile, and Unique. Phylogenetic networks based on the gene content of Core and Stable classes are highly congruent with that created from the concatenated alignment of fully conserved core genes, in contrast to those of Intermediate and Mobile classes, which show quite different topologies. By clustering the accessory OGs on the basis of phylogenetic pattern similarity and chromosomal proximity, we identified 60 co-occurring gene clusters (CGCs). In addition to known genomic islands, including cag pathogenicity island, bacteriophages, and integrating conjugative elements, we identified some novel ones. One island encodes TerY-phosphorylation triad, which includes the eukaryote-type protein kinase/phosphatase gene pair, and components of type VII secretion system. Another one contains a reverse-transcriptase homolog, which may be involved in the defense against phage infection through altruistic suicide. Many of the CGCs contained restriction-modification (RM) genes. Different RM systems sometimes occupied the same (orthologous) locus in the strains. We anticipate that our method will facilitate pan-genome studies in general and help identify novel genomic islands in various bacterial species. PMID:27504980

  6. AGAPE (Automated Genome Analysis PipelinE) for Pan-Genome Analysis of Saccharomyces cerevisiae

    PubMed Central

    Song, Giltae; Dickins, Benjamin J. A.; Demeter, Janos; Engel, Stacia; Dunn, Barbara; Cherry, J. Michael

    2015-01-01

    The characterization and public release of genome sequences from thousands of organisms is expanding the scope for genetic variation studies. However, understanding the phenotypic consequences of genetic variation remains a challenge in eukaryotes due to the complexity of the genotype-phenotype map. One approach to this is the intensive study of model systems for which diverse sources of information can be accumulated and integrated. Saccharomyces cerevisiae is an extensively studied model organism, with well-known protein functions and thoroughly curated phenotype data. To develop and expand the available resources linking genomic variation with function in yeast, we aim to model the pan-genome of S. cerevisiae. To initiate the yeast pan-genome, we newly sequenced or re-sequenced the genomes of 25 strains that are commonly used in the yeast research community using advanced sequencing technology at high quality. We also developed a pipeline for automated pan-genome analysis, which integrates the steps of assembly, annotation, and variation calling. To assign strain-specific functional annotations, we identified genes that were not present in the reference genome. We classified these according to their presence or absence across strains and characterized each group of genes with known functional and phenotypic features. The functional roles of novel genes not found in the reference genome and associated with strains or groups of strains appear to be consistent with anticipated adaptations in specific lineages. As more S. cerevisiae strain genomes are released, our analysis can be used to collate genome data and relate it to lineage-specific patterns of genome evolution. Our new tool set will enhance our understanding of genomic and functional evolution in S. cerevisiae, and will be available to the yeast genetics and molecular biology community. PMID:25781462

  7. A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands

    PubMed Central

    Uchiyama, Ikuo; Albritton, Jacob; Fukuyo, Masaki; Kojima, Kenji K.; Yahara, Koji; Kobayashi, Ichizo

    2016-01-01

    Genomes of a given bacterial species can show great variation in gene content and thus systematic analysis of the entire gene repertoire, termed the pan-genome, is important for understanding bacterial intra-species diversity, population genetics, and evolution. Here, we analyzed the pan-genome from 30 completely sequenced strains of the human gastric pathogen Helicobacter pylori belonging to various phylogeographic groups, focusing on 991 accessory (not fully conserved) orthologous groups (OGs). We developed a method to evaluate the mobility of genes within a genome, using the gene order in the syntenically conserved regions as a reference, and classified the 991 accessory OGs into five classes: Core, Stable, Intermediate, Mobile, and Unique. Phylogenetic networks based on the gene content of Core and Stable classes are highly congruent with that created from the concatenated alignment of fully conserved core genes, in contrast to those of Intermediate and Mobile classes, which show quite different topologies. By clustering the accessory OGs on the basis of phylogenetic pattern similarity and chromosomal proximity, we identified 60 co-occurring gene clusters (CGCs). In addition to known genomic islands, including cag pathogenicity island, bacteriophages, and integrating conjugative elements, we identified some novel ones. One island encodes TerY-phosphorylation triad, which includes the eukaryote-type protein kinase/phosphatase gene pair, and components of type VII secretion system. Another one contains a reverse-transcriptase homolog, which may be involved in the defense against phage infection through altruistic suicide. Many of the CGCs contained restriction-modification (RM) genes. Different RM systems sometimes occupied the same (orthologous) locus in the strains. We anticipate that our method will facilitate pan-genome studies in general and help identify novel genomic islands in various bacterial species. PMID:27504980

  8. Numerical Study of High-Temperature Jet Flow Using RANS/LES and PANS Formulations

    NASA Technical Reports Server (NTRS)

    Abdol-Hamid, Khaled S.; Elmiligui, Alaa

    2005-01-01

    Two multi-scale-type turbulence models are implemented in the PAB3D solver. The models are based on modifying the Reynolds Averaged Navier-Stokes (RANS) equations. The first scheme is a hybrid RANS/LES model utilizing the two-equation (k(epsilon)) model with a RANS/LES transition function dependent on grid spacing and the computed turbulence length scale. The second scheme is a modified version of the Partially Averaged Navier-Stokes (PANS) model, where the unresolved kinetic energy parameter (f(sub k)) is allowed to vary as a function of grid spacing and the turbulence length scale. This parameter is estimated based on a novel two-stage procedure to efficiently estimate the level of scale resolution possible for a given flow on a given grid for Partial Averaged Navier-Stokes (PANS). It has been found that the prescribed scale resolution can play a major role in obtaining accurate flow solutions. The parameter f(sub k) varies between zero and one and equal to one in the viscous sub layer, and when the RANS turbulent viscosity becomes smaller than the LES viscosity. The formulation, usage methodology, and validation examples are presented to demonstrate the enhancement of PAB3D's time-accurate and turbulence modeling capabilities. The accurate simulations of flow and turbulent quantities will provide valuable tool for accurate jet noise predictions. Solutions from these models are compared to RANS results and experimental data for high-temperature jet flows. The current results show promise for the capability of hybrid RANS/LES and PANS in simulating such flow phenomena.

  9. Thermochronology and geochemistry of the Pan-African basement below the Sab'atayn Basin, Yemen

    NASA Astrophysics Data System (ADS)

    Veeningen, Resi; Rice, A. Hugh N.; Schneider, David A.; Grasemann, Bernhard

    2015-02-01

    Three important lithologies occur in two drill wells from the Pan-African basement underlying the Mesozoic Sab'atayn Basin, in a previously undocumented area of the Pan-African, 83 and 90 km NE of known exposures in Yemen. Cores from well 1 include amphibolite, with basaltic to andesitic compositions, affected by crustal contamination during emplacement into a thickened crust. Deeper in the well, an unfoliated dark red monzogranite has a U-Pb zircon age of 628.8 ± 3.1 Ma and a Rb-Sr biotite cooling age of 591.6 ± 5.8 Ma (∼300 °C). Regional constraints suggest emplacement in a transitional tectonic setting with compressional terrane amalgamation followed by extensional collapse. Sm-Nd isotope analysis yields a TDM model age of 1.24 Ga with negative εNd values, suggesting the monzogranite is part of the Al Bayda island arc terrane. Cores from well 2 contains a weakly deformed, massive (unbedded) medium grey meta-arkose exhibiting essentially no geochemical signature of weathering and with an almost pure dacitic composition. This rock may have been directly derived from an (extrusive) granitoid that was emplaced prior to, or during terrane amalgamation. A (U-Th-Sm)/He zircon age of 156 ± 14 Ma constrains the time of basement cooling to ∼180 °C, synchronous with basin formation. These lithologies provide new insights in the development of the Pan-African basement of Yemen, extending our knowledge of the nearby surface geology to the subsurface.

  10. Restitution of IRS-1C PAN data using an orbit attitude model and minimum control

    NASA Astrophysics Data System (ADS)

    Radhadevi, P. V.; Ramachandran, R.; Murali Mohan, A. S. R. K. V.

    A mathematical model is designed to provide an accurate method of transforming PAN imagery from image space to object space and vice versa, using a minimum of one ground control point (GCP) to determine the exterior orientation of the images. The model, initially developed for SPOT images, uses collinearity condition equations to model the satellite path, while variations of the satellite attitude with time are modelled using higher order polynomials. Initial orbit information is obtained from the given ephemeris data and refinement is carried out using an iterative least squares solution. This model is tested for three different cases: (1) single image, (2) strip (acquired from one detector during a single orbit pass), and (3) stereopair. For the cases (1) and (2), an average error of 9.1 m in latitude and 7.6 m in longitude could be achieved using a single surveyed GCP for modelling. Using one ground control point identified from a 1 : 50,000 scale map, accuracies in the order of 38.3 m in latitude, 42.6 m in longitude and 23.8 m in height were obtained for a stereopair. The results verify the model and give some idea of the extent to which IRS-1C PAN will be contributing to future evolutions in photogrammetry and cartography. The software for orbit attitude modelling described in this paper is a part of SOFTSPACE, a Softcopy Photogrammetric Workstation to handle stereo data of IRS-1C PAN and SPOT images, which is an integrated package of preprocessing, restitution, DTM and feature capture modules.

  11. Allometric and metameric shape variation in Pan mandibular molars: a digital morphometric analysis.

    PubMed

    Singleton, Michelle; Rosenberger, Alfred L; Robinson, Chris; O'neill, Rob

    2011-02-01

    The predominance of molar teeth in fossil hominin assemblages makes the patterning of molar shape variation a topic of bioanthropological interest. Extant models are the principal basis for understanding dental variation in the fossil record. As the sister taxon to the hominin clade, Pan is one such model and the only widely accepted extant hominid model for both interspecific and intraspecific variation. To explore the contributions of allometric scaling and meristic variation to molar variation in Pan, we applied geometric shape analysis to 3D landmarks collected from virtual replicas of chimpanzee and bonobo mandibular molars. Multivariate statistical analysis and 3D visualization of metameric and allometric shape vectors were used to characterize shape differences and test the hypothesis that species of Pan share patterns of metameric variation and molar shape allometry. Procrustes-based shape variables were found to effectively characterize crown shape, sorting molars into species and tooth-row positions with ≥ 95% accuracy. Chimpanzees and bonobos share a common pattern of M(1) -M(2) metameric variation, which is defined by differences in the relative position of the metaconid, size of the hypoconulid, curvature of the buccal wall, and proportions of the basins and foveae. Allometric scaling of molar shape is homogeneous for M(1) and M(2) within species, but bonobo and chimpanzee allometric vectors are significantly different. Nevertheless, the common allometric shape trend explains most molar-shape differences between P. paniscus and P. troglodytes. When allometric effects are factored out, chimpanzee and bonobo molars are not morphometrically distinguishable. Implications for hominid taxonomy and dietary reconstruction are discussed. PMID:21235007

  12. Ratosa playa lake in southern Spain. Karst pan or compound sink?

    PubMed

    Rodríguez-Rodríguez, Miguel; Martos-Rosillo, Sergio; Pedrera, Antonio; Benavente-Herrera, José

    2015-04-01

    In Andalusia (Spain), there are more than 45 semiarid playa lakes protected as natural reserves and related to karstic outcrops. Some of them are located over regional karstic aquifers and have internal drainage networks with sporadic surface outlets, such as sinkholes (compound sinks), but the majority of such playas have no internal drainage systems, so the only water output is evaporation (karst pans). Karst pans are perched and disconnected from the groundwater system. The fact that the Ratosa playa lake is partially located over a karstic Sierra, as well as other hydromorphological observations, it is suggested that the system could be of a compound type, but a detailed hydrogeological analysis showed that the playa is disconnected from the aquifer, so it is in fact a karst pan. Once the hydrological functioning had been established, a monthly water balance for a 10-year period (1998-2008), enabled us to reproduce the evolution of the water level of the playa lake. Estimations of runoff were carried out by a soil water estimate for a water holding capacity in the soil of 191 mm. Results show a good correlation (>90%) after calibration with the time series of water level in the lake for the same period confirming geological observations. Our results highlight that this water body is extremely vulnerable to hydrological alterations of its watershed caused by human activities, particularly those related to land-use change for agriculture. For this reason, we propose a new protection zone, based on hydrological knowledge, instead of the present Peripheral Area of Protection. PMID:25810083

  13. The Tiddiline Formation: An Enigmatic Pan African Molasse of the Anti-Atlas Mountains, Morocco

    NASA Astrophysics Data System (ADS)

    Hefferan, K. P.; Inglis, J. D.

    2010-12-01

    The Tiddiline Formation, once regarded as a post-Pan African Orogeny rift basin unit, is now recognized as a syn-collisional molasse unit recording important regional compression between the Bou Azzer ophiolite and the West African Craton. This coarsening upwards sequence records the uplift and unroofing of a foreland basin and cannabalization of those clasts in an intraformational conglomerate. Over the past ten years, precise U-Pb radiometric dates have provided constraints on the ages of plutonism and metamorphism in the Anti-Atlas Mountains. However, the age of the Tiddiline Formation - and the cessation of the Pan African Orogeny-- continues to elude researchers. Published reports suggest that the Tiddiline Formation may be >650 Ma (Saghro Group) or younger than 560 Ma (Ouarzazate Group). Basin development appears to post-date a regional metamorphism event traditionally associated with arc-continent collision, which is marked by an apparent unconformity between the Tiddiline and deformed metasediments and syn-tectonic intrusions. Subsequent folding and faulting of the Tiddiline Formation indicates that the region underwent renewed shortening after collisional metamorphism. Currently our understanding of the wider tectonic implications associated with the development of the Tiddiline basin and its subsequent deformation is limited. In particular, questions remain about whether the formation records i) a continuum of collision and exhumation of the colliding arc following regional metamorphism; or ii) extension, then, rejuvenation of shortening associated with final oblique suturing. Therefore, understanding the evolution and age of basin development and deformation is of critical importance to our understanding of Latest Neoproterozoic Pan African tectonic events. This study examines field mapping and geochronologic data and proposes that the Tiddiline Formation is a distinct rock Formation, the age of which must be verified through a careful U-Pb analysis of

  14. Yeast Eps15-like endocytic protein Pan1p regulates the interaction between endocytic vesicles, endosomes and the actin cytoskeleton

    PubMed Central

    Toshima, Junko Y; Furuya, Eri; Nagano, Makoto; Kanno, Chisa; Sakamoto, Yuta; Ebihara, Masashi; Siekhaus, Daria Elisabeth; Toshima, Jiro

    2016-01-01

    The actin cytoskeleton plays important roles in the formation and internalization of endocytic vesicles. In yeast, endocytic vesicles move towards early endosomes along actin cables, however, the molecular machinery regulating interaction between endocytic vesicles and actin cables is poorly understood. The Eps15-like protein Pan1p plays a key role in actin-mediated endocytosis and is negatively regulated by Ark1 and Prk1 kinases. Here we show that pan1 mutated to prevent phosphorylation at all 18 threonines, pan1-18TA, displayed almost the same endocytic defect as ark1Δ prk1Δ cells, and contained abnormal actin concentrations including several endocytic compartments. Early endosomes were highly localized in the actin concentrations and displayed movement along actin cables. The dephosphorylated form of Pan1p also caused stable associations between endocytic vesicles and actin cables, and between endocytic vesicles and endosomes. Thus Pan1 phosphorylation is part of a novel mechanism that regulates endocytic compartment interactions with each other and with actin cables. DOI: http://dx.doi.org/10.7554/eLife.10276.001 PMID:26914139

  15. Ultrafine particles from electric appliances and cooking pans: experiments suggesting desorption/nucleation of sorbed organics as the primary source.

    PubMed

    Wallace, L A; Ott, W R; Weschler, C J

    2015-10-01

    Ultrafine particles are observed when metal surfaces, such as heating elements in electric appliances, or even empty cooking pans, are heated. The source of the particles has not been identified. We present evidence that particles >10 nm are not emitted directly from the heating elements or the metal surfaces. Using repeated heating of an electric burner, several types of cooking pans, and a steam iron, the increase in the number of particles (>10 nm) can be reduced to 0. After the devices are exposed to indoor air for several hours or days, subsequent heating results in renewed particle production, suggesting that organic matter has sorbed on their surfaces. Also, after a pan has been heated to the point that no increase in particles is observed, washing with detergent results in copious production of particles the next time the pan is heated. These observations suggest that detergent residue and organics sorbed from indoor air are the sources of the particles. We hypothesize that organic compounds are thermally desorbed from the hot surface as gaseous molecules; as they diffuse from the hot air near the pan into cooler air, selected compounds exceed their saturation concentration and nucleation occurs. PMID:25250820

  16. Evaluation and improvements of two community models in simulating dry deposition velocities for peroxyacetyl nitrate (PAN) over a coniferous forest

    NASA Astrophysics Data System (ADS)

    Wu, Zhiyong; Wang, Xuemei; Turnipseed, Andrew A.; Chen, Fei; Zhang, Leiming; Guenther, Alex B.; Karl, Thomas; Huey, L. G.; Niyogi, Dev; Xia, Beicheng; Alapaty, Kiran

    2012-02-01

    Dry deposition velocities (Vd) for peroxyacetyl nitrate (PAN) calculated using two community dry deposition models with different treatments of both stomatal and nonstomatal uptakes were evaluated using measurements of PAN eddy covariance fluxes over a Loblolly pine forest in July 2003. The observed daytime maximum of Vd(PAN) was ˜1.0 cm s-1on average, while the estimates by the WRF-Chem dry deposition module (WDDM) and the Noah land surface model coupled with a photosynthesis-based Gas Exchange Model (Noah-GEM) were only 0.2 cm s-1 and 0.6 cm s-1, respectively. The observations also showed considerable PAN deposition at night with typical Vd values of 0.2-0.6 cm s-1, while the estimated values from both models were less than 0.1 cm s-1. Noah-GEM modeled more realistic stomatal resistance (Rs) than WDDM, as compared with observations of water vapor exchange fluxes. The poor performance of WDDM for stomatal uptake is mainly due to its lack of dependence on leaf area index. Thermal decomposition was found to be relatively unimportant for measured PAN fluxes as shown by the lack of a relationship between measured total surface conductance and temperature. Thus, a large part of the underprediction in Vd from both models should be caused by the underestimation of nonstomatal uptake, in particular, the cuticle uptake. Sensitivity tests on both stomatal and nonstomatal resistances terms were conducted and some recommendations were provided.

  17. Foliar injury response of petunia and kidney bean to simultaneous and alternate exposures to ozone and pan

    NASA Astrophysics Data System (ADS)

    Nouchi, Isamu; Mayumi, Hirokazu; Yamazoe, Fumio

    Petunia at about 6 weeks old and kidney bean at two growing stages (6-7 days old and 16-18 days old) were exposed separately to O 3, (0-0.40 ppm) and PAN (0-0.25 ppm) for 4 h and to the mixture for the same time. In addition, petunia was exposed to O, (0.10-0.40 ppm) and then PAN (0.010-0.040 ppm) for 4 h, respectively. Foliar injury of petunia and kidney bean in exposures to the mixtures of O 3 and PAN was significantly smaller than that induced by each oxidant, with the exception of PAN injury on young leaves of 16-18 day-old kidney bean. The percentage of foliar injury caused by either of the mixed pollutants decreased with an increase of the concentration of the other oxidant, and was found to approximate a logarithmic function of the combined pollutant concentrations expressed as O 3, minum PAN or vice versa. Alternate exposures caused no additive or synergistic injuries.

  18. Phage ΦPan70, a Putative Temperate Phage, Controls Pseudomonas aeruginosa in Planktonic, Biofilm and Burn Mouse Model Assays.

    PubMed

    Holguín, Angela V; Rangel, Guillermo; Clavijo, Viviana; Prada, Catalina; Mantilla, Marcela; Gomez, María Catalina; Kutter, Elizabeth; Taylor, Corinda; Fineran, Peter C; Barrios, Andrés Fernando González; Vives, Martha J

    2015-08-01

    Pseudomonas aeruginosa is one of the Multi-Drug-Resistant organisms most frequently isolated worldwide and, because of a shortage of new antibiotics, bacteriophages are considered an alternative for its treatment. Previously, P. aeruginosa phages were isolated and best candidates were chosen based on their ability to form clear plaques and their host range. This work aimed to characterize one of those phages, ΦPan70, preliminarily identified as a good candidate for phage-therapy. We performed infection curves, biofilm removal assays, transmission-electron-microscopy, pulsed-field-gel-electrophoresis, and studied the in vivo ΦPan70 biological activity in the burned mouse model. ΦPan70 was classified as a member of the Myoviridae family and, in both planktonic cells and biofilms, was responsible for a significant reduction in the bacterial population. The burned mouse model showed an animal survival between 80% and 100%, significantly different from the control animals (0%). However, analysis of the ΦPan70 genome revealed that it was 64% identical to F10, a temperate P. aeruginosa phage. Gene annotation indicated ΦPan70 as a new, but possible temperate phage, therefore not ideal for phage-therapy. Based on this, we recommend genome sequence analysis as an early step to select candidate phages for potential application in phage-therapy, before entering into a more intensive characterization. PMID:26274971

  19. PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants

    PubMed Central

    Chow, Chi-Nga; Zheng, Han-Qin; Wu, Nai-Yun; Chien, Chia-Hung; Huang, Hsien-Da; Lee, Tzong-Yi; Chiang-Hsieh, Yi-Fan; Hou, Ping-Fu; Yang, Tien-Yi; Chang, Wen-Chi

    2016-01-01

    Transcription factors (TFs) are sequence-specific DNA-binding proteins acting as critical regulators of gene expression. The Plant Promoter Analysis Navigator (PlantPAN; http://PlantPAN2.itps.ncku.edu.tw) provides an informative resource for detecting transcription factor binding sites (TFBSs), corresponding TFs, and other important regulatory elements (CpG islands and tandem repeats) in a promoter or a set of plant promoters. Additionally, TFBSs, CpG islands, and tandem repeats in the conserve regions between similar gene promoters are also identified. The current PlantPAN release (version 2.0) contains 16 960 TFs and 1143 TF binding site matrices among 76 plant species. In addition to updating of the annotation information, adding experimentally verified TF matrices, and making improvements in the visualization of transcriptional regulatory networks, several new features and functions are incorporated. These features include: (i) comprehensive curation of TF information (response conditions, target genes, and sequence logos of binding motifs, etc.), (ii) co-expression profiles of TFs and their target genes under various conditions, (iii) protein-protein interactions among TFs and their co-factors, (iv) TF-target networks, and (v) downstream promoter elements. Furthermore, a dynamic transcriptional regulatory network under various conditions is provided in PlantPAN 2.0. The PlantPAN 2.0 is a systematic platform for plant promoter analysis and reconstructing transcriptional regulatory networks. PMID:26476450

  20. Identification of measles virus epitopes using an ultra-fast method of panning phage-displayed random peptide libraries

    PubMed Central

    Yu, Xiaoli; Barmina, Olga; Burgoon, Mark; Gilden, Don

    2010-01-01

    Phage-displayed random peptide libraries, in which high affinity phage peptides are enriched by repetitive selection (panning) on target antibody, provide a unique tool for identifying antigen specificity. This paper describes a new panning method that enables selection of peptides in 1 day as compared to about 6 days required in traditional panning to identify virus-specific epitopes. The method, termed ultra-fast selection of peptide (UFSP), utilizes phage produced by bacterial infection (phage amplification) directly for subsequent panning. Phage amplified in less than 1 h of infection in Escherichia coli are used for binding to target antibody pre-coated in the same wells of an ELISA plate, obviating the need for traditional large-scale amplification and purification. Importantly, phage elution at 37 °C was superior to that at room temperature, and phage amplification in a 150-μl volume of E. coli cells was superior to that in 250-μl volume. Application of UFSP to two monoclonal antibodies generated from clonally expanded plasma cells in subacute sclerosing panencephalitis (SSPE) brain identified high-affinity measles virus-specific-peptide epitopes. The UFSP panning methodology will expedite identification of peptides reacting with antibodies generated in other diseases of unknown antigenic specificity such as multiple sclerosis (MS), sarcoidosis and Behcet’s disease. PMID:19095007