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Sample records for demersal fish species

  1. Marine fronts are important fishing areas for demersal species at the Argentine Sea (Southwest Atlantic Ocean)

    NASA Astrophysics Data System (ADS)

    Alemany, Daniela; Acha, Eduardo M.; Iribarne, Oscar O.

    2014-03-01

    The high primary and secondary production associated with frontal systems attract a diversity of organisms due to high prey availability; this is why a strong relationship between fronts and pelagic fisheries has been shown worldwide. In the Argentine Sea, demersal resources are the most important, both in economical and in ecological sense; so we hypothesize that fronts are also preferred fishing areas for demersal resources. We evaluated the relationship between spatial distribution of fishing effort and oceanographic fronts, analyzing three of the most important frontal systems located in the Argentine Sea: the shelf-break front, the southern Patagonia front and the mid-shelf front. Individual vessel satellite monitoring system data (VMS; grouped by fleet type: ice-trawlers, freezer-trawlers and jigging fleet) were studied and fishing events were identified. Fishing events per area were used as a proxy of fishing effort and its spatial distribution by fleet type was visualized and analyzed with Geographic Information Systems. Oceanographic fronts were defined using polygons based on satellite chlorophyll amplitude values, and the percentage of fishing events within each polygon was calculated. Results showed a positive association between fronts and fishing activities of the different fleets, which suggests the aggregation of target species in these zones. The coupling of the freezer-trawler and jigging fleets (that operate on lower trophic level species; Macruronus magellanicus and Illex argentinus respectively) with fronts was higher than the ice-trawler fleet, targeting species of higher trophic level (Merluccius hubbsi). Marine fronts represent important fishing areas, even for demersal resources, as the distribution of fishing fleets and fishing effort are positively associated with frontal zones.

  2. Toxic Metals in Pelagic, Benthic and Demersal Fish Species from Mediterranean FAO Zone 37.

    PubMed

    Naccari, Clara; Cicero, Nicola; Ferrantelli, Vincenzo; Giangrosso, Giuseppe; Vella, Antonio; Macaluso, Andrea; Naccari, Francesco; Dugo, Giacomo

    2015-11-01

    Fish represents a nutrient-rich food but, at the same time, is one of the most important contributor to the dietary intake of heavy metals. The aim of this study was to assess residual levels of Pb, Cd and Hg in different species, caught from FAO zones 37 1.3 and 37 2.2, particularly small pelagic, benthic and demersal fishes. The results obtained showed the absence of toxic metal in fishes from FAO zone 37 1.3. Relating to FAO zone 37 2.2, instead, in all samples we observed the absence of Pb, small concentrations of Cd (0.081±0.022 mg/kg) and higher Hg residual levels (0.252±0.033 mg/kg). Particularly, the trend of Cd contamination was similar in all species whereas Hg showed high levels in demersal, intermediate in pelagic and low in benthic species. However, only Cd concentrations exceed the MRL in mackerel, mullet, sea-bream fishes, according to Regulation CE n. 629/2008 and n. 488/2014. PMID:26115726

  3. Respiration of four species of deep-sea demersal fishes measured in situ in the eastern North Pacific

    NASA Astrophysics Data System (ADS)

    Drazen, Jeffrey C.; Yeh, John

    2012-01-01

    The lack of data on the metabolism of deep-sea demersal fishes is a major gap in our ecological knowledge of the deep ocean. Metabolism influences individual rate processes such as resource utilization, growth, and reproduction. It also correlates with an animal's ability to accommodate ocean acidification. Here we describe an autonomous in situ respirometry system that is deployed autonomously from a ship to capture fishes attracted to bait, and measure their rate of oxygen consumption. This instrument is multi-chambered and relies on the fish to actuate the capture mechanism and start the experiments. Although capture rates were low, data on five fishes were obtained including Eptatretus deani, two Coryphaenoides acrolepis, Antimora microlepis, and Pachycara gymninium. The metabolisms of the latter two species were measured for the first time. The metabolic rates were low (0.09-0.40 μmols O 2 g -1 h -1 at temperatures of 1.8-4.0 °C) in comparison to shallow water species. After taking temperature differences into account only the metabolic rates of benthopelagic species, C. acrolepis and A. microlepis, were substantially lower, by an order of magnitude, than shallow water relatives such as cod and pollock. The metabolic rate of the deep-sea fishes varied considerably clearly warranting further experiments to ascertain which factors are likely to explain the differences.

  4. Fish parasites in the Arctic deep-sea: Poor diversity in pelagic fish species vs. heavy parasite load in a demersal fish

    NASA Astrophysics Data System (ADS)

    Klimpel, Sven; Palm, Harry Wilhelm; Busch, Markus Wilhelm; Kellermanns, Esra; Rückert, Sonja

    2006-07-01

    A total of 219 deep-sea fishes belonging to five families were examined for the parasite fauna and stomach contents. The demersal fish Macrourus berglax, bathypelagic Bathylagus euryops, and mesopelagic Argentina silus, Borostomias antarcticus, Chauliodus sloani, and Lampanyctus macdonaldi were caught at 243-708 m trawling depth in the Greenland and the Irminger Sea in 2002. A total of 21 different parasite species, six Digenea, one Monogenea, two Cestoda, seven Nematoda, one Acanthocephala, and four Crustacea, were found. The parasite diversity in the meso- and bathypelagic environment was less diverse in comparison to the benthal. Macrourus berglax had the highest diversity (20 species), usually carrying 4-10 different parasite species (mean 7.1), whereas Bathylagus euryops harbored up to three and Argentina silus, Borostomias antarcticus, Chauliodus sloani and Lampanyctus macdonaldi each up to two species. Most Digenea, Cestoda, Nematoda, Acanthocephala, and Crustacea are known from a wide host range. Several of the encountered parasites occurred at a very low prevalence (<10%), indicating that the studied deep-sea fishes are most probably not instrumental to complete the parasite life cycles in the area of investigation. It is suggested that the lack of nutrients in the meso- and bathypelagial limits the abundance of potential first intermediate hosts of nematodes and cestodes, resulting in low infestation rates even of widely distributed, non-specific species. In contrast, the higher biomass in the benthic deep-sea environment increases the availability of potential intermediate hosts, such as molluscs for the digeneans, resulting in increased parasite diversity. Because many deep-sea fish have a generalistic feeding behavior, the observed different parasite diversity reflects a different depth range of the fish and not necessarily a specific fish feeding ecology.

  5. Spatial and Temporal Entry Patterns of Fish Larvae into North Carolina Estuaries: Comparisons Among One Pelagic and Two Demersal Species

    NASA Astrophysics Data System (ADS)

    Joyeux, J.-C.

    1998-12-01

    A sampling programme targeting larvae of winter spawning fishes immigrating from the oceanic domain into the Pamlico-Albemarle Sounds system (NC, U.S.A.) was performed at the four major inlets of the lagoon system. Sampling yielded abundant catches of three species, a Clupeid (Atlantic menhaden,Brevoortia tyrannus) and two Sciaenids (Atlantic croaker,Micropogonias undulatusand spot,Leiostomus xanthurus). In this article, the author documents the differences in the mechanisms developed for estuarine recruitment among the three species. Abundance at the tidal inlets was dependent upon numerous factors, such as sampling month, inlet, luminosity, tide flow direction and depth. The spatial and temporal positioning of the larvae differed among the species and affected their capabilities to be transported through the inlets. More specifically, spot and croaker migrated vertically within the water column in accordance with the direction of the water flow. Sciaenids minimized the outwelling effects of ebb tides by migrating into the slowest ebbing currents, near the bottom. Menhaden did not rely on vertical migrations for estuarine transport and retention. For this species, landward transport is provided either when dusk and flood onset are coincident or through non-tidal flows developing under meteorological forcing. The Sciaenids were less, or not, dependent upon these conditions. In one inlet, the retention was dependent upon the strength of the flooding and ebbing flows. In this case, the retention of the pelagic species was lower than the retention of demersal species.

  6. Metal concentrations in demersal fish species from Santa Maria Bay, Baja California Sur, Mexico (Pacific coast).

    PubMed

    Jonathan, M P; Aurioles-Gamboa, David; Villegas, Lorena Elizabeth Campos; Bohórquez-Herrera, Jimena; Hernández-Camacho, Claudia J; Sujitha, S B

    2015-10-15

    Concentrations of 11 trace metals (Fe, Mn, Cr, Cu, Ni, Co, Pb, Zn, Cd, As, Hg) in 40 fish species from Santa Maria Bay, Baja California Sur, Mexico, the strategically important area for marine mammals and organisms were analyzed. Based on their concentrations the ranking of metals Fe>Zn>Ni>Cr>Mn>Pb>Cu>Co>As>Cd>Hg suggests that organism size, metabolism and feeding habits are correlated with metal concentrations. Local geological formations affect the concentrations of different metals in the aquatic environment and are subsequently transferred to fishes. The correlation analysis suggests that metabolism and nurturing habits impact the concentration of metals. Concentrations of Fe and Mn appear to be influenced by scavenging and absorption processes, which vary by species. The considerable variability in the metal concentrations obtained in different species underscores the importance of regular monitoring. PMID:26228068

  7. Habitat Specialization in Tropical Continental Shelf Demersal Fish Assemblages

    PubMed Central

    Fitzpatrick, Ben M.; Harvey, Euan S.; Heyward, Andrew J.; Twiggs, Emily J.; Colquhoun, Jamie

    2012-01-01

    The implications of shallow water impacts such as fishing and climate change on fish assemblages are generally considered in isolation from the distribution and abundance of these fish assemblages in adjacent deeper waters. We investigate the abundance and length of demersal fish assemblages across a section of tropical continental shelf at Ningaloo Reef, Western Australia, to identify fish and fish habitat relationships across steep gradients in depth and in different benthic habitat types. The assemblage composition of demersal fish were assessed from baited remote underwater stereo-video samples (n = 304) collected from 16 depth and habitat combinations. Samples were collected across a depth range poorly represented in the literature from the fringing reef lagoon (1–10 m depth), down the fore reef slope to the reef base (10–30 m depth) then across the adjacent continental shelf (30–110 m depth). Multivariate analyses showed that there were distinctive fish assemblages and different sized fish were associated with each habitat/depth category. Species richness, MaxN and diversity declined with depth, while average length and trophic level increased. The assemblage structure, diversity, size and trophic structure of demersal fishes changes from shallow inshore habitats to deeper water habitats. More habitat specialists (unique species per habitat/depth category) were associated with the reef slope and reef base than other habitats, but offshore sponge-dominated habitats and inshore coral-dominated reef also supported unique species. This suggests that marine protected areas in shallow coral-dominated reef habitats may not adequately protect those species whose depth distribution extends beyond shallow habitats, or other significant elements of demersal fish biodiversity. The ontogenetic habitat partitioning which is characteristic of many species, suggests that to maintain entire species life histories it is necessary to protect corridors of connected

  8. Seasonal variation in species composition and abundance of demersal fish and invertebrates in a Seagrass Natural Reserve on the eastern coast of the Shandong Peninsula, China

    NASA Astrophysics Data System (ADS)

    Xu, Qiang; Guo, Dong; Zhang, Peidong; Zhang, Xiumei; Li, Wentao; Wu, Zhongxin

    2016-03-01

    Seagrass habitats are structurally complex ecosystems, which support high productivity and biodiversity. In temperate systems the density of seagrass may change seasonally, and this may influence the associated fish and invertebrate community. Little is known about the role of seagrass beds as possible nursery areas for fish and invertebrates in China. To study the functioning of a seagrass habitat in northern China, demersal fish and invertebrates were collected monthly using traps, from February 2009 to January 2010. The density, leaf length and biomass of the dominant seagrass Zostera marina and water temperature were also measured. The study was conducted in a Seagrass Natural Reserve (SNR) on the eastern coast of the Shandong Peninsula, China. A total of 22 fish species and five invertebrate species were recorded over the year. The dominant fish species were Synechogobius ommaturus, Sebastes schlegelii, Pholis fangi, Pagrus major and Hexagrammos otakii and these species accounted for 87% of the total number of fish. The dominant invertebrate species were Charybdis japonica and Octopus variabilis and these accounted for 98% of the total abundance of invertebrates. There was high temporal variation in species composition and abundance. The peak number of fish species occurred in August-October 2009, while the number of individual fish and biomass was highest during November 2009. Invertebrate numbers and biomass was highest in March, April, July and September 2009. Temporal changes in species abundance of fishes and invertebrates corresponded with changes in the shoot density and leaf length of the seagrass, Zostera marina.

  9. Targeted demersal fish species exhibit variable responses to long-term protection from fishing at the Houtman Abrolhos Islands

    NASA Astrophysics Data System (ADS)

    Bornt, Katrina R.; McLean, Dianne L.; Langlois, Tim J.; Harvey, Euan S.; Bellchambers, Lynda M.; Evans, Scott N.; Newman, Stephen J.

    2015-12-01

    Natural fluctuations in the abundance and length of targeted fish are often disrupted by acute environmental changes and anthropogenic impacts, particularly fishing pressure. Long-term assessments of targeted fish populations inside and outside areas closed to fishing are often necessary to elucidate these effects, yet few of these studies extend over long time periods. We assessed trends in the abundance and length of six targeted fish species in areas open and closed to fishing on seven occasions spanning a 9-year period (2005-2010 and 2013) at the Houtman Abrolhos Islands, Western Australia. Shallow (8-12 m) and deep (22-26 m) coral-dominated reef sites were sampled across four geographically separated island groups using baited remote underwater stereo-video (stereo-BRUV). Between 2005 and 2010, populations of Lethrinus miniatus, Lethrinus nebulosus, Plectropomus leopardus, and Chrysophrys auratus became increasingly dominated by larger individuals, potentially indicative of an ageing population. Between 2010 and 2013, however, there was a significant increase in the proportion of smaller L. miniatus, L. nebulosus, and P. leopardus in both open and closed areas, reflecting increased recruitment perhaps due to changing environmental conditions associated with a marine heat wave anomaly. This recruitment pulse was not observed for the other species in this study ( Chr. auratus, Choerodon rubescens, and Glaucosoma hebraicum). Lethrinus miniatus, L. nebulosus, Chr. auratus, and P. leopardus were larger in closed areas relative to open areas; however, they were not more abundant. These complex responses to protection also varied across sampling years for certain species (e.g., P. leopardus). Monitoring changes over the long-term in areas open and closed to fishing provides a sound basis for separating environmental variability from that associated with fishing mortality, which is crucial for optimising fisheries management.

  10. Response of a temperate demersal fish community to global warming

    NASA Astrophysics Data System (ADS)

    Punzón, A.; Serrano, A.; Sánchez, F.; Velasco, F.; Preciado, I.; González-Irusta, J. M.; López-López, L.

    2016-09-01

    Changes in the distribution of the demersal fish species have been identified in north-European Atlantic waters. The consequence of these changes has been a northward shift of the distribution limits and changes in richness. In this study a notable increase in demersal fish species richness per sampling station was detected in the southern Bay of Biscay. This rise was due to an increase in frequency of occurrence and abundance of the majority of fish species in the area (53% from the total species). A fisheries relate explanation was discarded because the mismatch between the changes in the fishing effort and the augment in frequency of occurrence and abundance. On the contrary, these changes are in agreement with expected response under the increasing temperature of the sea observed over the last three decades, associated to global warming. These changes were positively correlated with an increase in temperature of intermediate waters in the study area. In addition, some of these species showed a notable western displacements of the Centre of Gravity in the study area, which would be expected if temperate water species would be favoured by an increase in water temperature. Our results are consistent with studies in the North Sea, where many of these species showing widened distribution limits towards north. The analysis of the results shows that the studied ecosystem, the Bay of Biscay is under a meridionalization process. On the other hand, only one tropicalization event (Lepidotrigla dieuzeidei), was recorded, maybe due to the conservative restrictions applied in species selection.

  11. Foraging Behaviour Patterns of Four Sympatric Demersal Fishes

    NASA Astrophysics Data System (ADS)

    Labropoulou, M.; Papadopoulou-Smith, K.-N.

    1999-08-01

    The trophic relationships of four sympatric demersal fish species (Mullus barbatus, Mullus surmuletus, Pagrus pagrus and Gobius niger) which dominate the shallow coastal areas (25-30 m) of Iraklion Bay (S Aegean, NE Mediterranean) were investigated from samples collected on a monthly basis (August 1990-August 1992). Stomach content analysis revealed that all four species were carnivorous, feeding mainly on benthic invertebrates. Although these species displayed different feeding modes based on principal prey type utilization, they all consumed a considerable number of polychaetes. In order to understand any underlying patterns of predation on polychaetes, prey items were identified to the lowest possible taxonomic level. The polychaete species were further classified into groups according to their microhabitat (surface or burrowing) and feeding (feeding mode, motility and morphology) guilds. Comparisons of the feeding habits were made using the percentage contribution by number of each prey species in the diet of the predators. Similarities in the diets between the fish species were calculated and cluster analysis was used to describe interspecific variations in food selection, concerning polychaetes. The predatory preferences of each fish species were related to the microhabitat distribution of prey species in the sediment. The differential exploitation of polychaete species was a good indicator of disparate foraging behaviour among the fish species examined, since it reflects a transition from a non-selective to a specialized feeding method. The effects of predator size and morphology of feeding apparatus and the availability of polychaete species in the environment are also discussed to explain the differential exploitation of polychaetes exhibited by the fish.

  12. The importance of deep-sea vulnerable marine ecosystems for demersal fish in the Azores

    NASA Astrophysics Data System (ADS)

    Pham, Christopher K.; Vandeperre, Frederic; Menezes, Gui; Porteiro, Filipe; Isidro, Eduardo; Morato, Telmo

    2015-02-01

    Cold-water corals and sponges aggregations are important features of the deep sea, recently classified as vulnerable marine ecosystems (VMEs). VMEs increase habitat complexity, believed to act as feeding, reproductive, nursery and refuge areas for a high number of invertebrates and fish species. In the Azores archipelago (NE Atlantic), VMEs are prevalent but their ecological role has not received much attention. The objective of this study was to investigate the importance of VMEs in influencing the distribution of demersal fish in the Azores. With data collected during experimental longline surveys , we modeled the catch of six demersal fish species of commercial value (Helicolenus dactylopterus, Pagellus bogaraveo, Mora moro, Conger conger, Phycis phycis, Pontinus kuhlii) in relation to the presence of VMEs and other environmental factors using General Additive Models (GAMs). Our study demonstrated that total fish catch was higher inside VMEs but the relationship between fish and VMEs varied among fish species. Species specific models showed that catch was strongly influenced by environmental factors, mainly depth, whilst the presence of VMEs was only important for two rockfish species; juvenile and adult P. kuhlii and juvenile H. dactylopterus. Although the association between deep-sea demersal fish and VMEs may be an exception to the rule, we suggest that VMEs act as an important habitat for two commercially important species in the Azores.

  13. SPATIO-TEMPORAL FLUCTUATIONS IN THE DISTRIBUTION AND ABUNDANCE OF DEMERSAL FISH AND EPIBENTHIC CRUSTACEANS IN YAQUINA BAY, OREGON

    EPA Science Inventory

    A total of over 32,000 demersal fish and epibenthic crustaceans belonging to 62 species were caught in 42 biweekly trawls from 10 stations in Yaquina Bay, Oregon, during 1967 and 1968. English sole, Parophrys vetulus, was the most abundant species. eventeen species (13 fishes and...

  14. Brain areas in abyssal demersal fishes.

    PubMed

    Wagner, H J

    2001-06-01

    Four areas of the brain which receive primary projections from chemical senses ([1] olfactory bulb, [2] gustatory area including facial and vagal lobes), the eye ([3] optic tectum), and mechanosensory, and-hair-cell based systems i.e. the lateral line, vestibular and auditory systems ([4] trigeminal and octavolateral regions) have been studied and relative size differences used to make deductions on the sensory preferences of 35 fish species living on or near the bottom of the deep sea. Furthermore the relative volumes of the telencephalon and the corpus cerebelli were determined. Two evaluation modes were applied: (1) the relative mean of each system was calculated and species with above-average areas identified; (2) a cluster analysis established multivariate correlations among the sensory systems. The diversity of sensory brain areas in this population of fish suggests that the benthic and epibenthic environment of the abyss presents a rich sensory environment. Vision seems to be the single most important sense suggesting the presence of relevant bioluminescent stimuli. However, in combination the chemical senses, smell and taste, surpass the visual system; most prominent among them is olfaction. The trigeminal/octavolateral area indicating the role of lateral line input and possibly audition is also well represented, but only in association with other sensory modalities. A large volume telencephalon was often observed in combination with a prominent olfactory system, whereas cerebella of unusually large sizes occurred in species with above-average visual, hair-cell based, but also olfactory systems, confirming their role as multimodal sensorimotor coordination centers. In several species the predictions derived from the volumetric brain analyses were confirmed by earlier observations of stomach content and data obtained by baited cameras. PMID:11713385

  15. Biomass of deepwater demersal forage fishes in Lake Huron, 1994-2007: Implications for offshore predators

    USGS Publications Warehouse

    Roseman, E.F.; Riley, S.C.

    2009-01-01

    We estimated the biomass of deepwater demersal forage fishes (those species common in the diets of lake trout and Chinook salmon) in Lake Huron during the period 1994-2007. The estimated total lake-wide biomass of deepwater demersal fishes in 2007 was reduced by 87 percent of that observed in 1994. Alewife biomass remained near the record low observed in 2004. Biomass of young-of-the-year rainbow smelt was at a record high in 2005, but little recruitment appears to have occurred in 2006 or 2007. Record-high estimates of young-of-the-year bloater biomass were observed in 2005 and 2007, and an increase in the biomass of adult bloater in 2007 suggests that some recruitment may be occurring. The biomass of other potential deepwater demersal forage fish species (sculpins, ninespine stickleback, trout-perch and round goby) has also declined since 1994 and remained low in 2007. The forage fish community in 2007 was dominated by small (< 120 mm) bloater and rainbow smelt. These results suggest that lake trout and Chinook salmon in Lake Huron may face nutritional stress in the immediate future.

  16. Plastic ingestion by pelagic and demersal fish from the North Sea and Baltic Sea.

    PubMed

    Rummel, Christoph D; Löder, Martin G J; Fricke, Nicolai F; Lang, Thomas; Griebeler, Eva-Maria; Janke, Michael; Gerdts, Gunnar

    2016-01-15

    Plastic ingestion by marine biota has been reported for a variety of different taxa. In this study, we investigated 290 gastrointestinal tracts of demersal (cod, dab and flounder) and pelagic fish species (herring and mackerel) from the North and Baltic Sea for the occurrence of plastic ingestion. In 5.5% of all investigated fishes, plastic particles were detected, with 74% of all particles being in the microplastic (<5mm) size range. The polymer types of all found particles were analysed by means of Fourier transform infrared (FT-IR) spectroscopy. Almost 40% of the particles consisted of polyethylene (PE). In 3.4% of the demersal and 10.7% of the pelagic individuals, plastic ingestion was recorded, showing a significantly higher ingestion frequency in the pelagic feeders. The condition factor K was calculated to test differences in the fitness status between individuals with and without ingested plastic, but no direct effect was detected. PMID:26621577

  17. Spatial and temporal variability of demersal fishes at Condor seamount (Northeast Atlantic)

    NASA Astrophysics Data System (ADS)

    Menezes, Gui M.; Giacomello, Eva

    2013-12-01

    Temporal and spatial patterns of variation of benthic and benthopelagic fish assemblages on the Condor Seamount of the Azores, Northeast Atlantic, were studied based on longline samples from the depth interval 200-1300 m depth. The seamount was used as a commercial fishing ground for decades but is currently closed to fishing as a temporary protected area for research. The protection regime offers an opportunity to monitor and analyze responses to harvesting and recovery from previous fishing impacts. Species number, catches per unit of effort, and zonation with depth corresponded in general with what was observed elsewhere for the Azorean demersal fish community. Total abundance, species richness and species composition significantly varied in time and space within the seamount, generally showing a North-South asymmetry. Abundance and species richness were higher in the Northern than in the Southern sector of the seamount, mainly due to higher abundances of the species Helicolenus dactylopterus, Pagellus bogaraveo, Beryx splendens and Trachurus picturatus. Analyses of abundance variation of the most frequent species showed an array of species-specific responses. The variability of fish assemblages is discussed in the light of oceanographic and anthropogenic factors, which may drive the observed patterns and trends.

  18. Vertical stratification in the distribution of demersal fishes along the walls of the La Jolla and Scripps submarine canyons, California, USA

    NASA Astrophysics Data System (ADS)

    Smith, Joshua G.; Lindholm, James

    2016-08-01

    The geographic distributions of many coastal marine fish assemblages are strongly driven by habitat features, particularly among demersal fishes that live along the seafloor. Ecologists have long recognized the importance of characterizing fish habitat associations, especially where spatial management is under consideration. However, little is known about fish distributions and habitat suitability in unique demersal habitats such as submarine canyons. The active continental margin of the California coast is cut by eight submarine canyons, several of which extend from the shore to the deep abyssal plain. We sampled the demersal fish assemblages in two of those canyons: (1) the Scripps submarine canyon in the San-Diego-Scripps State Marine Conservation Area (SMCA) and (2) the La Jolla canyon in the Matlahuayl State Marine Reserve (SMR) to gain insight into both the distributions and habitat associations of demersal fishes in canyons. A remotely operated vehicle was used to conduct 21 vertically oriented transects along the canyon walls in depths ranging from 20 to 300 m. Species composition was assessed in three depth-stratified zones (100 m per zone) along the canyon walls. Species richness, abundance, and attributes of the surrounding canyon habitat structure (slope and benthic terrain ruggedness) were quantified. Three distinct assemblage groupings were identified, which comprised 35 species of demersal fishes from 17 families. Among all factors analyzed in this study, depth, slope, and ruggedness were strong explanatory variables of patterns of species richness and abundance; however, the relationship between depth and assemblage structure was non-linear. The greatest number of species was observed in the mid depth-stratified zone. These trends suggest that variation in canyon dynamics across depth strata may facilitate distinct assemblage groupings of demersal fishes, which can in turn be used to better manage these unique habitats.

  19. Enzyme activities of demersal fishes from the shelf to the abyssal plain

    NASA Astrophysics Data System (ADS)

    Drazen, Jeffrey C.; Friedman, Jason R.; Condon, Nicole E.; Aus, Erica J.; Gerringer, Mackenzie E.; Keller, Aimee A.; Elizabeth Clarke, M.

    2015-06-01

    The present study examined metabolic enzyme activities of 61 species of demersal fishes (331 individuals) trawled from a 3000 m depth range. Citrate synthase, lactate dehydrogenase, malate dehydrogenase, and pyruvate kinase activities were measured as proxies for aerobic and anaerobic activity and metabolic rate. Fishes were classified according to locomotory mode, either benthic or benthopelagic. Fishes with these two locomotory modes were found to exhibit differences in metabolic enzyme activity. This was particularly clear in the overall activity of citrate synthase, which had higher activity in benthopelagic fishes. Confirming earlier, less comprehensive studies, enzyme activities declined with depth in benthopelagic fishes. For the first time, patterns in benthic species could be explored and these fishes also exhibited depth-related declines in enzyme activity, contrary to expectations of the visual interactions hypothesis. Trends were significant when using depth parameters taken from the literature as well as from the present trawl information, suggesting a robust pattern regardless of the depth metric used. Potential explanations for the depth trends are discussed, but clearly metabolic rate does not vary simply as a function of mass and habitat temperature in fishes as shown by the substantial depth-related changes in enzymatic activities.

  20. Autonomous video camera system for monitoring impacts to benthic habitats from demersal fishing gear, including longlines

    NASA Astrophysics Data System (ADS)

    Kilpatrick, Robert; Ewing, Graeme; Lamb, Tim; Welsford, Dirk; Constable, Andrew

    2011-04-01

    Studies of the interactions of demersal fishing gear with the benthic environment are needed in order to manage conservation of benthic habitats. There has been limited direct assessment of these interactions through deployment of cameras on commercial fishing gear especially on demersal longlines. A compact, autonomous deep-sea video system was designed and constructed by the Australian Antarctic Division (AAD) for deployment on commercial fishing gear to observe interactions with benthos in the Southern Ocean finfish fisheries (targeting toothfish, Dissostichus spp). The Benthic Impacts Camera System (BICS) is capable of withstanding depths to 2500 m, has been successfully fitted to both longline and demersal trawl fishing gear, and is suitable for routine deployment by non-experts such as fisheries observers or crew. The system is entirely autonomous, robust, compact, easy to operate, and has minimal effect on the performance of the fishing gear it is attached to. To date, the system has successfully captured footage that demonstrates the interactions between demersal fishing gear and the benthos during routine commercial operations. It provides the first footage demonstrating the nature of the interaction between demersal longlines and benthic habitats in the Southern Ocean, as well as showing potential as a tool for rapidly assessing habitat types and presence of mobile biota such as krill ( Euphausia superba).

  1. Meiofauna as food source for small-sized demersal fish in the southern North Sea

    NASA Astrophysics Data System (ADS)

    Schückel, Sabine; Sell, Anne F.; Kihara, Terue C.; Koeppen, Annemarie; Kröncke, Ingrid; Reiss, Henning

    2013-06-01

    Meiofauna play an essential role in the diet of small and juvenile fish. However, it is less well documented which meiofaunal prey groups in the sediment are eaten by fish. Trophic relationships between five demersal fish species (solenette, goby, scaldfish, dab <20 cm and plaice <20 cm) and meiofaunal prey were investigated by means of comparing sediment samples and fish stomach contents collected seasonally between January 2009 and January 2010 in the German Bight. In all seasons, meiofauna in the sediment was numerically dominated by nematodes, whereas harpacticoids dominated in terms of occurrence and biomass. Between autumn and spring, the harpacticoid community was characterized by Pseudobradya minor and Halectinosoma canaliculatum, and in summer by Longipedia coronata. Meiofaunal prey dominated the diets of solenette and gobies in all seasons, occurred only seasonally in the diet of scaldfish and dab, and was completely absent in the diet of plaice. For all fish species (excluding plaice) and in each season, harpacticoids were the most important meiofauna prey group in terms of occurrence, abundance and biomass. High values of Ivlev's index of selectivity for Pseudobradya spp. in winter and Longipedia spp. in summer provided evidence that predation on harpacticoids was species-selective, even though both harpacticoids co-occurred in high densities in the sediments. Most surficial feeding strategies of the studied fish species and emergent behaviours of Pseudobradya spp. and Longipedia spp. might have caused this prey selection. With increasing fish sizes, harpacticoid prey densities decreased in the fish stomachs, indicating a diet change towards larger benthic prey during the ontogeny of all fish species investigated.

  2. How do demersal fishing fleets interact with aggregate extraction in a congested sea?

    NASA Astrophysics Data System (ADS)

    Marchal, Paul; Desprez, Michel; Vermard, Youen; Tidd, Alex

    2014-08-01

    The effects of the aggregate extraction intensity and the distance to extraction sites on the distribution of fishing effort were investigated for a broad selection of French and English demersal fleets operating in the Eastern English Channel. The most prominent result was that most fleets fishing near to aggregate extraction sites were not deterred by extraction activities. The fishing effort of dredgers and potters could be greater adjacent to marine aggregates sites than elsewhere, and also positively correlated to extraction intensity with a lag of 0-9 months. The distribution of fishing effort of French netters remained consistent over the study period. However, it is of note that the fishing effort of netters has increased substantially in the impacted area of the Dieppe site (where it is correlated to extraction intensity with a lag of 6 months), while slightly decreasing in the intermediate and reference areas. The attraction of fishing fleets is likely due to a local temporary concentration of their main target species. However, knowledge of their life-history characteristics and habitat preferences suggests that some of these species could be particularly vulnerable to aggregate extractions in the longer term.

  3. Long-term trends in habitat use of offshore demersal fishes in western Lake Huron suggest large-scale ecosystem change

    USGS Publications Warehouse

    Riley, Stephen C.; Adams, Jean V.

    2010-01-01

    We estimated mean depths of capture for offshore demersal fish species, grouped into three habitat-based guilds (shallow benthic, pelagic, and deep benthic), using fall bottom trawl data (27–73 m) in the western main basin of Lake Huron from 1976 to 2007. The mean depth of capture of the shallow and deep benthic guilds initially exhibited a trend toward capture in shallower water, switched to a trend toward capture in deeper water in 1991, and changed back to a trend toward capture in shallower water in 2001–2002. Species in the pelagic guild showed a similar pattern, but the initial change point occurred in 1981 for this guild. Individual species in these guilds showed variable patterns of depth distribution, but a feature common to all guilds and all pelagic and deep benthic species was a change to a trend toward capturing fish in shallower water that occurred nearly simultaneously (1999–2002). These common trends suggest that large-scale factors are affecting the habitat use of offshore demersal fish species in Lake Huron. The depth distributions of the three guilds have converged in recent years, indicating that the locations of suitable habitat for offshore demersal fishes may be changing. Our results indicate that the benthic ecology of the western main basin of Lake Huron is undergoing profound changes across a large spatial scale that are affecting the habitat use of offshore demersal fishes. We suggest that these changes are related to recent invasions of exotic species.

  4. Impact on demersal fish of a large-scale and deep sand extraction site with ecosystem-based landscaped sandbars

    NASA Astrophysics Data System (ADS)

    de Jong, Maarten F.; Baptist, Martin J.; van Hal, Ralf; de Boois, Ingeborg J.; Lindeboom, Han J.; Hoekstra, Piet

    2014-06-01

    For the seaward harbour extension of the Port of Rotterdam in the Netherlands, approximately 220 million m3 sand was extracted between 2009 and 2013. In order to decrease the surface area of direct impact, the authorities permitted deep sand extraction, down to 20 m below the seabed. Biological and physical impacts of large-scale and deep sand extraction are still being investigated and largely unknown. For this reason, we investigated the colonization of demersal fish in a deep sand extraction site. Two sandbars were artificially created by selective dredging, copying naturally occurring meso-scale bedforms to increase habitat heterogeneity and increasing post-dredging benthic and demersal fish species richness and biomass. Significant differences in demersal fish species assemblages in the sand extraction site were associated with variables such as water depth, median grain size, fraction of very fine sand, biomass of white furrow shell (Abra alba) and time after the cessation of sand extraction. Large quantities of undigested crushed white furrow shell fragments were found in all stomachs and intestines of plaice (Pleuronectes platessa), indicating that it is an important prey item. One and two years after cessation, a significant 20-fold increase in demersal fish biomass was observed in deep parts of the extraction site. In the troughs of a landscaped sandbar however, a significant drop in biomass down to reference levels and a significant change in species assemblage was observed two years after cessation. The fish assemblage at the crests of the sandbars differed significantly from the troughs with tub gurnard (Chelidonichthys lucerna) being a Dufrêne-Legendre indicator species of the crests. This is a first indication of the applicability of landscaping techniques to induce heterogeneity of the seabed although it remains difficult to draw a strong conclusion due the lack of replication in the experiment. A new ecological equilibrium is not reached after 2

  5. Ingestion of microplastics by demersal fish from the Spanish Atlantic and Mediterranean coasts.

    PubMed

    Bellas, Juan; Martínez-Armental, José; Martínez-Cámara, Ariana; Besada, Victoria; Martínez-Gómez, Concepción

    2016-08-15

    Microplastic pollution has received increased attention over the last few years. This study documents microplastic ingestion in three commercially relevant demersal fish species from the Spanish Atlantic and Mediterranean coasts, the lesser spotted dogfish Scyliorhinus canicula, the European hake Merluccius merluccius and the red mullet Mullus barbatus. Overall 212 fish were examined, 72 dogfish, 12 hakes and 128 red mullets. The percentage of fish with microplastics was 17.5% (15.3% dogfish, 18.8% red mullets and 16.7% hakes), averaging 1.56±0.5 items per fish, and the size of the microplastics ranged from 0.38 to 3.1mm. These fish species are used currently as biomonitors for marine pollution monitoring within the Spanish Marine Pollution Monitoring Programme (SMP), and may be as well suitable candidates for monitoring spatial and temporal trends of ingested litter. The data presented here represent a baseline for the implementation of the Marine Strategy Framework Directive descriptor 10 in Spain. PMID:27289284

  6. A continuum of life histories in deep-sea demersal fishes

    NASA Astrophysics Data System (ADS)

    Drazen, Jeffrey C.; Haedrich, Richard L.

    2012-03-01

    It is generally perceived that all deep-sea fishes have great longevity, slow growth, and low reproductive output in comparison to shelf dwelling species. However, such a dichotomy is too simplistic because some fishes living on continental slopes are relatively fecund and fast growing, important considerations in respect to the management of expanding deep-sea fisheries. We tested two hypotheses that might explain variation in life history attributes of commercially exploited demersal fishes: (1) phylogeny best explains the differences because deep-sea species are often in different families from shelf dwelling ones and, alternatively, (2) environmental factors affecting individual life history attributes that change with depth account for the observed variation. Our analysis was based on 40 species from 9 orders, including all major commercially exploited deep-sea fishes and several phylogenetically related shelf species. Depth of occurrence correlated significantly with age at 50% maturity increasing linearly with depth (r2=0.46), while the von Bertalanffy growth coefficient, maximum fecundity and potential rate of population increase declined significantly and exponentially with depth (r2=0.41, 0.25 and 0.53, respectively). These trends were still significant when phylogenetically independent contrasts were applied. The trends were also consistent with similar slopes amongst members of the order Gadiformes and the order Scorpaeniformes. Reduced temperatures, predation pressure, food availability, or metabolic rates may all contribute to such changes with depth. Regardless of the mechanisms, by analyzing a suite of fishes from the shelves to the slope the present analysis has shown that rather than a simple dichotomy between deep-sea fishes and shelf fishes there is a continuum of life history attributes in fishes which correlate strongly with depth of occurrence.

  7. Northeastern Chukchi Sea demersal fishes and associated environmental characteristics, 2009-2010

    NASA Astrophysics Data System (ADS)

    Norcross, Brenda L.; Raborn, Scott W.; Holladay, Brenda A.; Gallaway, Benny J.; Crawford, Stephen T.; Priest, Justin T.; Edenfield, Lorena E.; Meyer, Robert

    2013-09-01

    Three closely-spaced study areas in the northeastern Chukchi Sea off of Alaska provided a opportunity to examine demersal fish communities over a small spatial scale as part of a multidisciplinary program. During 2009 and 2010, fishes in the three study areas (Klondike, Burger, and Statoil) were sampled at 37 stations with a plumb staff beam trawl and a 3 m beam trawl; 70% of stations were sampled during all three cruises. Fish catches were dominated by small fishes (<150 mm TL), which cannot be wholly attributed to the small mesh size of the net. Output from generalized linear modeling of the data suggested that overall fish density, species richness, and density of Arctic staghorn sculpin (Gymnocanthus tricuspis) and Bering flounder (Hippoglossoides robustus) were higher in the more southerly Klondike study area than in the more northerly Burger and Statoil study areas. Arctic cod (Boreogadus saida) was abundant throughout the study region. Richness and density could be explained by the environmental variables that defined the overall study area. The Klondike study area was warmer and erosional in nature with higher proportions of gravel sediment. Other study areas were colder and more depositional in nature with muddier sediment and were characterized by high densities of megafaunal invertebrates such as brittle stars. There appeared to be a lack of ecological homogeneity across these three closely-spaced study areas of the Chukchi Sea.

  8. Demersal fish assemblages off the Seine and Sedlo seamounts (northeast Atlantic)

    NASA Astrophysics Data System (ADS)

    Menezes, Gui M.; Rosa, Alexandra; Melo, Octávio; Pinho, Mário R.

    2009-12-01

    Seamounts are thought to support special biological communities, and often maintain high standing stocks of demersal and benthopelagic fishes. Seamount fish fauna have been described in several studies but few works have included species taken below 600 m. The demersal fish assemblages of the Seine and Sedlo seamounts (northeast Atlantic) from the summits to 2000 m depth were investigated based on longline survey catch data, conducted as part of the OASIS project. A total of 41 fish species from 24 families were caught at Seine near Madeira, and 30 species from 19 families were caught at Sedlo north of the Azores. Both fish faunas have high affinities with the neighbouring areas of the Azores, Madeira and with the eastern North Atlantic and the Mediterranean Sea. Overall abundances and mean body weights were slightly higher at Sedlo seamount, appearing in conformity with the latitudinal effect of increasing species abundance and productivity from south to north. The differential influence of the Mediterranean Water at each seamount may contribute to explain (a) the differences found in vertical distribution of common species, which tend to distribute deeper at Seine, and (b) the observed changes in the species composition and dominance in deeper waters. Multivariate analysis revealed a vertical structure that is approximately coincident with the expected zonation of water masses at each seamount. Physiological tolerance to the prevailing vertical hydrological conditions may explain the species distribution and the large-scale vertical assemblage structure found. However, further ecological factors like productivity patterns affecting the amount and quality of the available food appear to shape the abundance, diversity or dominance patterns of functional groups within those main assemblages. At Seine, the species Trachurus picturatus dominated the catches, mainly at the shallower edge of the plateau, appearing consistent with the sound-scattering layer interception

  9. Latitudinal distribution of persistent organic pollutants in pelagic and demersal marine fish on the Norwegian Coast.

    PubMed

    Bustnes, Jan Ove; Borgå, Katrine; Dempster, Tim; Lie, Elisabeth; Nygård, Torgeir; Uglem, Ingebrigt

    2012-07-17

    The latitudinal distribution of persistent organic pollutants (POPs: legacy organochlorines [OCs], polybrominated diphenyl ethers [PBDEs,] and hexabromocyclododecane [HBCD]) was examined in livers of two species of marine fish, the pelagic saithe (Pollachius virens,n = 40) and the demersal cod (Gadus morhua,n = 40), along a south-north gradient (59°-70°N) on the Norwegian Coast. Cod had in general two to three times higher concentrations of POPs than saithe, probably because of higher exposure in the benthic food chain. The concentrations of heavy halogenated compounds were higher in the southernmost region than further north. Moreover, the POP pattern showed a gradual shift in the compositions from south to north, especially for OCs in cod: i.e. the relative importance of low-chlorinated polychlorinated biphenyl (PCB) congeners and some OC-pesticides (e.g., hexachlorobenzen [HCB]) in the contaminant burdens increased with latitude. The latitudinal fractionation signal was weaker in saithe, possibly due to its pelagic and nomadic behavior. Hence, this study shows not only a strong latitudinal fractionation in the compositional patterns of POPs in marine fish but also the effects of habitat use and fish behavior. PMID:22734881

  10. Demersal fishes associated with Lophelia pertusa coral and hard-substrate biotopes on the continental slope, northern Gulf of Mexico

    USGS Publications Warehouse

    Sulak, Kenneth J.; Allen, Brooks R.; Luke, Kirsten E.; Norem, April D.; Randall, Michael; Quaid, Andrew J.; Yeargin, George E.; Miller, Jana M.; Harden, William M.; Caruso, John H.; Ross, Steve W.

    2007-01-01

    The demersal fish fauna of Lophelia pertusa (Linnaeus, 1758) coral reefs and associated hard-bottom biotopes was investigated at two depth horizons in the northern Gulf of Mexico using a manned submersible and remote sampling. The Viosca Knoll fauna consisted of at least 53 demersal fish species, 37 of which were documented by submersible video. On the 325 m horizon, dominant taxa determined from frame-by-frame video analysis included Stromateidae, Serranidae, Trachichthyidae, Congridae, Scorpaenidae, and Gadiformes. On the 500 m horizon, large mobile visual macrocarnivores of families Stromateidae and Serranidae dropped out, while a zeiform microcarnivore assumed importance on reef "Thicket" biotope, and the open-slope taxa Macrouridae and Squalidae gained in importance. The most consistent faunal groups at both depths included sit-and-wait and hover-and-wait strategists (Scorpaenidae, Congridae, Trachichthyidae), along with generalized mesocarnivores (Gadiformes). The specialized microcarnivore, Grammicolepis brachiusculus Poey, 1873, appears to be highly associated with Lophelia reefs. The coral "Thicket" biotope was extensively developed on the 500 m site, but fish abundance was low with only 95 fish per hectare. In contrast to Lophelia reefs from the eastern the North Atlantic, the coral "Rubble" biotope was essentially absent. This study represents the first quantitative analysis of fishes associated with Lophelia reefs in the Gulf of Mexico, and generally in the western North Atlantic.

  11. Putative fishery-induced changes in biomass and population size structures of demersal deep-sea fishes in ICES Sub-area VII, North East Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    Godbold, J. A.; Bailey, D. M.; Collins, M. A.; Gordon, J. D. M.; Spallek, W. A.; Priede, I. G.

    2012-08-01

    A time series from 1977-1989 and 2000-2002 of scientific trawl surveys in the Porcupine Seabight and adjacent Abyssal Plain of the NE Atlantic was analysed to assess changes in demersal fish biomass and length frequency. These two periods coincide with the on-set of the commercial deep-water fishery in the late 1970s and the on-set of the regulation of the fishery in the early 2000's and allowed us to investigate changes in the relationship between total demersal fish biomass and depth between the pre- and post commercial fishing periods, changes in the biomass (kg km2) depth distribution and length frequency distribution of the most dominant fish species. Our results show a decline in total demersal fish biomass of 36% within the depth range of the commercial fishery (< 1500 m). Whilst there were significant declines in target (e.g. Coryphaenoides rupestris decreased by 57%) and non-target (e.g. Coryphaenoides guentheri and Antimora rostrata) species, not all species declined significantly. Changes in the overall length-frequency distribution were detected for 2 species (Coryphaenoides armatus, Synaphobranchus kaupii), but only at depths greater than 1800 m (outside the maximum depth for commercial trawling). This suggests that whilst there is evidence for likely fisheries impacts on the biomass distribution of the demersal fish population as a whole, species-specific impacts are highly variable. It is clear that changes in population structure can extend beyond the depth at which fishing takes place, highlighting the importance for also considering the indirect effects on deep-sea fish populations.

  12. Putative fishery-induced changes in biomass and population size structures of demersal deep-sea fishes in ICES Sub-area VII, Northeast Atlantic Ocean

    NASA Astrophysics Data System (ADS)

    Godbold, J. A.; Bailey, D. M.; Collins, M. A.; Gordon, J. D. M.; Spallek, W. A.; Priede, I. G.

    2013-01-01

    A time series from 1977-1989 and 2000-2002 of scientific trawl surveys in the Porcupine Seabight and adjacent abyssal plain of the NE Atlantic was analysed to assess changes in demersal fish biomass and length frequency. These two periods coincide with the onset of the commercial deep-water fishery in the late 1970s and the onset of the regulation of the fishery in the early 2000's, which allowed us to investigate changes in the relationship between total demersal fish biomass and depth between the pre- and post commercial fishing periods, as well as changes in the biomass (kg km-2) depth distribution and length frequency distribution of the most dominant fish species. Our results show a decline in total demersal fish biomass of 36% within the depth range of the commercial fishery (< 1500 m). Whilst there were significant declines in target (e.g. Coryphaenoides rupestris decreased by 57%) and non-target (e.g. C. guentheri and Antimora rostrata) species, not all species declined significantly. Changes in the overall length-frequency distribution were detected for 5 out of the 8 dominant species occupying depth ranges both within and outside the maximum depth for commercial trawling. This suggests that whilst there is evidence for likely fishery impacts on the biomass distribution of the demersal fish population as a whole, species-specific impacts are highly variable. It is clear that changes in population structure can extend beyond the depth at which fishing takes place, highlighting the importance for also considering the indirect effects on deep-sea fish populations.

  13. Demersal Fish Assemblages on Seamounts and Other Rugged Features in Deep Waters of the Greater and Lesser Antilles

    NASA Astrophysics Data System (ADS)

    Chaytor, J. D.; Quattrini, A.; Demopoulos, A. W.

    2015-12-01

    Caribbean fish communities in shallow waters have been well studied along the Greater and Lesser Antilles for decades; however, the deep (>200 m) assemblages remain poorly known due to the technical challenges associated with focused surveys at these greater depths. The numerous geological features (e.g., seamounts, island ridges, banks) that punctuate the insular margins increase habitat heterogeneity, which may lead to enhanced diversity of the deep demersal fish community in the region. Recent (2013-2014) expeditions in the area using the E/V Nautilus and the ROV Hercules surveyed fish communities during 17 dives across different seafloor features at depths ranging from 64 to 2944 m. These surveys enabled us to investigate whether demersal fish assemblages differed among these seafloor features and/or in response to other environmental factors. Preliminary analyses suggested that assemblage differences are influenced by depth, dissolved oxygen, and differences in benthic microhabitat (i.e., soft substrate, rock outcrop, slope angle). Notably, both abundance and diversity of fishes was low at depths >700 m on seamounts in the Anegada Passage. This pattern is likely due to limited food supply in the region. ROV surveys further elucidated the biogeography of numerous species, as several range and depth extensions were documented. For instance, the morid Lepidion sp., previously known only from the eastern Atlantic and the western North Atlantic, was documented on Norrôit Seamount. A new species, Polylepion sp. A, known only from Curacao, was documented on Conrad Seamount. Also, many common, mesophotic reef species were observed deeper than previously known, including the butterflyfishes Chaetodon sedentarius and Prognathodes aculeatus. This study further supports the importance of environmental conditions influencing local-scale distribution of deep-sea fishes, while demonstrating how little is still known about the biogeography of numerous deep-sea and mesophotic

  14. Spatial and seasonal variations in the trophic spectrum of demersal fish assemblages in Jiaozhou Bay, China

    NASA Astrophysics Data System (ADS)

    Han, Dongyan; Xue, Ying; Ren, Yiping; Ma, Qiuyun

    2015-07-01

    Trophic structure of fish communities is fundamental for ecosystem-based fisheries management, and trophic spectrum classifies fishes by their positions in food web, which provides a simple summary on the trophic structure and ecosystem function. In this study, both fish biomass and abundance trophic spectra were constructed to study the spatial and seasonal variations in the trophic structure of demersal fish assemblages in Jiaozhou Bay, China. Data were collected from four seasonal bottom trawl surveys in Jiaozhou Bay from February to November in 2011. Trophic levels (TLs) of fishes were determined by nitrogen stable isotope analysis. This study indicated that most of these trophic spectra had a single peak at trophic level (TL) of 3.4-3.7, suggesting that demersal fish assemblages of Jiaozhou Bay were dominated by secondary consumers (eg. Pholis fangi and Amblychaeturichthys hexanema). The spatial and seasonal variations of trophic spectra of Jiaozhou Bay reflected the influence of fish reproduction, fishing pressure and migration of fishes. Two-way analysis of variance (ANOVA) showed that seasonal variations in trophic spectra in Jiaozhou Bay were significant ( P<0.05), but variations among different areas were not significant ( P>0.05). The trophic spectrum has been proved to be a useful tool to monitor the trophic structure of fish assemblages. This study highlighted the comprehensive application of fish biomass and abundance trophic spectra in the study on trophic structure of fish assemblages.

  15. Recovery of a temperate reef assemblage in a marine protected area following the exclusion of towed demersal fishing.

    PubMed

    Sheehan, Emma V; Stevens, Timothy F; Gall, Sarah C; Cousens, Sophie L; Attrill, Martin J

    2013-01-01

    Marine Protected Areas MPA have been widely used over the last 2 decades to address human impacts on marine habitats within an ecosystem management context. Few studies have quantified recovery of temperate rocky reef communities following the cessation of scallop dredging or demersal trawling. This is critical information for the future management of these habitats to contribute towards conservation and fisheries targets. The Lyme Bay MPA, in south west UK, has excluded towed demersal fishing gear from 206 km(2) of sensitive reef habitat using a Statutory Instrument since July 2008. To assess benthic recovery in this MPA we used a flying video array to survey macro epi-benthos annually from 2008 to 2011. 4 treatments (the New Closure, previously voluntarily Closed Controls and Near or Far Open to fishing Controls) were sampled to test a recovery hypothesis that was defined as 'the New Closure becoming more similar to the Closed Controls and less similar to the Open Controls'. Following the cessation of towed demersal fishing, within three years positive responses were observed for species richness, total abundance, assemblage composition and seven of 13 indicator taxa. Definitive evidence of recovery was noted for species richness and three of the indicator taxa (Pentapora fascialis, Phallusia mammillata and Pecten maximus). While it is hoped that MPAs, which exclude anthropogenic disturbance, will allow functional restoration of goods and services provided by benthic communities, it is an unknown for temperate reef systems. Establishing the likely timescales for restoration is key to future marine management. We demonstrate the early stages of successful recruitment and link these to the potential wider ecosystem benefits including those to commercial fisheries. PMID:24391841

  16. Cold-water coral mounds and sponge-beds as habitats for demersal fish on the Norwegian shelf

    NASA Astrophysics Data System (ADS)

    Kutti, Tina; Bergstad, Odd Aksel; Fosså, Jan Helge; Helle, Kristin

    2014-01-01

    The importance of cold-water coral (CWC) mounds and sponge-beds as habitat for demersal fish was examined in the Træna Deep marine protected area and adjacent areas of the Norwegian continental shelf. Standardised longline fishing was conducted twice, in June and March, and predetermined fishing effort was allocated to multiple plots with varying densities of small CWC mounds and sponges, plus control plots with neither of these habitats. Catches within all examined habitats were dominated by the commercially exploited Brosme brosme (representing >70% of the total catch) followed by Galeus melastomus, Chimaera monstrosa, Etmopterus spinax and the commercially exploited Molva molva. Positive correlations were found between catch rates of B. brosme, G. melastomus and C. monstrosa and the density of small CWC mounds at one or both sampling occasions. No correlations were found between the catch rates of the same three species and sponge density; thus the sponge-beds did not seem to represent an ecologically equivalent habitat to the CWCs. On a local scale the CWC habitat appeared to attract higher abundances of B. brosme, G. melastomus and C. monstrosa; however, the differences in catch rates between coral and non-coral areas were quite low (2-4 times) and for most species the fish-habitat relationships varied temporarily and with the spatial scale used to delineate the habitat. Based on the methods and the results of this study and the fact that CWCs only occupy a very small proportion of the Norwegian shelf, the importance of CWCs as habitat for the populations of the demersal fish species examined is judged as marginal.

  17. An innovative statistical approach to constructing a readily comprehensible food web for a demersal fish community

    NASA Astrophysics Data System (ADS)

    French, Ben; Clarke, K. Robert; Platell, Margaret E.; Potter, Ian C.

    2013-07-01

    Many food webs are so complex that it is difficult to distinguish the relationships between predators and their prey. We have therefore developed an approach that produces a food web which clearly demonstrates the strengths of the relationships between the predator guilds of demersal fish and their prey guilds in a coastal ecosystem. Subjecting volumetric dietary data for 35 abundant predators along the lower western Australia coast to cluster analysis and the SIMPROF routine separated the various species × length class combinations into 14 discrete predator guilds. Following nMDS ordination, the sequence of points for these predator guilds represented a 'trophic' hierarchy. This demonstrated that, with increasing body size, several species progressed upwards through this hierarchy, reflecting a marked change in diet, whereas others remained within the same guild. A novel use of cluster analysis and SIMPROF then identified each group of prey that was ingested in a common pattern across the full suite of predator guilds. This produced 12 discrete groups of taxa (prey guilds) that each typically comprised similar ecological/functional prey, which were then also aligned in a hierarchy. The hierarchical arrangements of the predator and prey guilds were plotted against each other to show the percentage contribution of each prey guild to the diet of each predator guild. The resultant shade plot demonstrates quantitatively how food resources are spread among the fish species and revealed that two prey guilds, one containing cephalopods and teleosts and the other small benthic/epibenthic crustaceans and polychaetes, were consumed by all predator guilds.

  18. Fine-scale spatial patterns in the demersal fish and invertebrate community in a northwest Atlantic ecosystem

    NASA Astrophysics Data System (ADS)

    Malek, Anna J.; Collie, Jeremy S.; Gartland, James

    2014-06-01

    The abundance, biomass, diversity, and species composition of the demersal fish and invertebrate community in Rhode Island Sound and Block Island Sound, an area identified for offshore renewable energy development, were evaluated for spatial and seasonal structure. We conducted 58 otter trawls and 51 beam trawls in the spring, summer and fall of 2009-2012, and incorporated additional data from 88 otter trawls conducted by the Northeast Area Monitoring and Assessment Program. We used regionally-grouped abundance, biomass, diversity, and size spectra to assess spatial patterns in the aggregate fish community, and hierarchical cluster analysis to evaluate trends in species assemblages. Our analyses revealed coherent gradients in fish community biomass, diversity and species composition extending from inshore to offshore waters, as well as patterns related to the differing bathymetry of Rhode Island and Block Island Sounds. The fish communities around Block Island and Cox's Ledge are particularly diverse, suggesting that the proximity of hard bottom habitat may be important in structuring fish communities in this area. Species assemblages in Rhode Island and Block Island Sounds are characterized by a combination of piscivores (silver hake, summer flounder, spiny dogfish), benthivores (American lobster, black sea bass, Leucoraja spp. skates, scup) and planktivores (sea scallop), and exhibit geographic patterns that are persistent from year to year, yet variable by season. Such distributions reflect the cross-shelf migration of fish and invertebrate species in the spring and fall, highlighting the importance of considering seasonal fish behavior when planning construction schedules for offshore development projects. The fine spatial scale (10 s of kms) of this research makes it especially valuable for local marine spatial planning efforts by identifying local-scale patterns in fish community structure that will enable future assessment of the ecological impacts of

  19. Carbon and nitrogen stable isotopic inventory of the most abundant demersal fish captured by benthic gears in southwestern Iceland (North Atlantic)

    NASA Astrophysics Data System (ADS)

    Sarà, Gianluca; de Pirro, Maurizio; Sprovieri, Mario; Rumolo, Paola; Halldórsson, Halldór Pálmar; Svavarsson, Jörundur

    2009-12-01

    Stable isotopes (δ13C and δ15N) were used to examine the origin of organic matter for the most representative demersal species of the SW Icelandic fishery, accounting for over 70% of landings of those species in the North Atlantic. Samples were collected during a 2-week period in early September 2004 from landings and directly during fishing cruises. Stable isotopes showed that particulate organic matter and sedimentary organic matter were at the base of the food web and appeared to fill two different compartments: the pelagic and the benthic. The pelagic realm was composed of only capelin and sandeel; krill and redfish occupied an intermediate position between pelagic and benthic realms; while anglerfish, haddock, cod and ling resulted as the true demersal species while tusk, rays and plaice were strongly linked to the benthic habitat.

  20. Demersal fish assemblages and spatial diversity patterns in the Arctic-Atlantic transition zone in the Barents Sea.

    PubMed

    Johannesen, Edda; Høines, Åge S; Dolgov, Andrey V; Fossheim, Maria

    2012-01-01

    Direct and indirect effects of global warming are expected to be pronounced and fast in the Arctic, impacting terrestrial, freshwater and marine ecosystems. The Barents Sea is a high latitude shelf Sea and a boundary area between arctic and boreal faunas. These faunas are likely to respond differently to changes in climate. In addition, the Barents Sea is highly impacted by fisheries and other human activities. This strong human presence places great demands on scientific investigation and advisory capacity. In order to identify basic community structures against which future climate related or other human induced changes could be evaluated, we analyzed species composition and diversity of demersal fish in the Barents Sea. We found six main assemblages that were separated along depth and temperature gradients. There are indications that climate driven changes have already taken place, since boreal species were found in large parts of the Barents Sea shelf, including also the northern Arctic area. When modelling diversity as a function of depth and temperature, we found that two of the assemblages in the eastern Barents Sea showed lower diversity than expected from their depth and temperature. This is probably caused by low habitat complexity and the distance to the pool of boreal species in the western Barents Sea. In contrast coastal assemblages in south western Barents Sea and along Novaya Zemlya archipelago in the Eastern Barents Sea can be described as diversity "hotspots"; the South-western area had high density of species, abundance and biomass, and here some species have their northern distribution limit, whereas the Novaya Zemlya area has unique fauna of Arctic, coastal demersal fish. (see Information S1 for abstract in Russian). PMID:22545093

  1. Demersal Fish Assemblages and Spatial Diversity Patterns in the Arctic-Atlantic Transition Zone in the Barents Sea

    PubMed Central

    Johannesen, Edda; Høines, Åge S.; Dolgov, Andrey V.; Fossheim, Maria

    2012-01-01

    Direct and indirect effects of global warming are expected to be pronounced and fast in the Arctic, impacting terrestrial, freshwater and marine ecosystems. The Barents Sea is a high latitude shelf Sea and a boundary area between arctic and boreal faunas. These faunas are likely to respond differently to changes in climate. In addition, the Barents Sea is highly impacted by fisheries and other human activities. This strong human presence places great demands on scientific investigation and advisory capacity. In order to identify basic community structures against which future climate related or other human induced changes could be evaluated, we analyzed species composition and diversity of demersal fish in the Barents Sea. We found six main assemblages that were separated along depth and temperature gradients. There are indications that climate driven changes have already taken place, since boreal species were found in large parts of the Barents Sea shelf, including also the northern Arctic area. When modelling diversity as a function of depth and temperature, we found that two of the assemblages in the eastern Barents Sea showed lower diversity than expected from their depth and temperature. This is probably caused by low habitat complexity and the distance to the pool of boreal species in the western Barents Sea. In contrast coastal assemblages in south western Barents Sea and along Novaya Zemlya archipelago in the Eastern Barents Sea can be described as diversity “hotspots”; the South-western area had high density of species, abundance and biomass, and here some species have their northern distribution limit, whereas the Novaya Zemlya area has unique fauna of Arctic, coastal demersal fish. (see Information S1 for abstract in Russian). PMID:22545093

  2. Consideration on the Long Ecological Half-Life Component of (137)Cs in Demersal Fish Based on Field Observation Results Obtained after the Fukushima Accident.

    PubMed

    Tagami, Keiko; Uchida, Shigeo

    2016-02-16

    Radiocesium concentrations in most marine fish collected off the coast of Fukushima and surrounding prefectures have decreased with time, and four years after the Fukushima Daiichi Nuclear Power Plant accident occurred, radiocesium concentrations have generally fallen below the detectable level (ca. < 10 Bq kg(-1)-raw). Only in some demersal fish species have detectable concentration levels still been found, and even these species have showed slow radiocesium decreases. The food web was considered as the major factor causing this phenomenon; however, slow elimination rates of radiocesium from these fish species also could be the cause. The latter effect was examined by considering that the (137)Cs concentration decreasing trend in fish could be fit with a set of three exponentially decreasing components; that is, having short, intermediate, and long biological half-lives. The long ecological half-life component was calculated using a 400-1500 d period of monitoring results for Japanese rockfish (Sebastes cheni) and compared with previous reported laboratory results for biological half-life. The obtained ecological half-lives ranged from 274-365 d, and these values agreed with the biological half-life of this fish species. This result implied that the long biological half-lives of radiocesium in some demersal fish species made their radiocesium contamination periods longer. PMID:26828695

  3. Large-scale spatio-temporal monitoring highlights hotspots of demersal fish diversity in the Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Granger, Victoria; Fromentin, Jean-Marc; Bez, Nicolas; Relini, Giulio; Meynard, Christine N.; Gaertner, Jean-Claude; Maiorano, Porzia; Garcia Ruiz, Cristina; Follesa, Cristina; Gristina, Michele; Peristeraki, Panagiota; Brind'Amour, Anik; Carbonara, Pierluigi; Charilaou, Charis; Esteban, Antonio; Jadaud, Angélique; Joksimovic, Aleksandar; Kallianiotis, Argyris; Kolitari, Jerina; Manfredi, Chiara; Massuti, Enric; Mifsud, Roberta; Quetglas, Antoni; Refes, Wahid; Sbrana, Mario; Vrgoc, Nedo; Spedicato, Maria Teresa; Mérigot, Bastien

    2015-01-01

    Increasing human pressures and global environmental change may severely affect the diversity of species assemblages and associated ecosystem services. Despite the recent interest in phylogenetic and functional diversity, our knowledge on large spatio-temporal patterns of demersal fish diversity sampled by trawling remains still incomplete, notably in the Mediterranean Sea, one of the most threatened marine regions of the world. We investigated large spatio-temporal diversity patterns by analysing a dataset of 19,886 hauls from 10 to 800 m depth performed annually during the last two decades by standardised scientific bottom trawl field surveys across the Mediterranean Sea, within the MEDITS program. A multi-component (eight diversity indices) and multi-scale (local assemblages, biogeographic regions to basins) approach indicates that only the two most traditional components (species richness and evenness) were sufficient to reflect patterns in taxonomic, phylogenetic or functional richness and divergence. We also put into question the use of widely computed indices that allow comparing directly taxonomic, phylogenetic and functional diversity within a unique mathematical framework. In addition, demersal fish assemblages sampled by trawl do not follow a continuous decreasing longitudinal/latitudinal diversity gradients (spatial effects explained up to 70.6% of deviance in regression tree and generalised linear models), for any of the indices and spatial scales analysed. Indeed, at both local and regional scales species richness was relatively high in the Iberian region, Malta, the Eastern Ionian and Aegean seas, meanwhile the Adriatic Sea and Cyprus showed a relatively low level. In contrast, evenness as well as taxonomic, phylogenetic and functional divergences did not show regional hotspots. All studied diversity components remained stable over the last two decades. Overall, our results highlight the need to use complementary diversity indices through different

  4. Effects of dredging operations on the demersal fish fauna of a South American tropical-subtropical transition estuary.

    PubMed

    Barletta, M; Cysneiros, F J A; Lima, A R A

    2016-07-01

    Changes in the environment and in the composition of fish assemblages in the Paranaguá Estuary (South Brazil) were assessed by comparisons made before, during and after dredging operations, in the same months and areas studied in the previous year. Interactions between year and month were observed for salinity. During the dredging year fish total density was 2 individuals m(-2) and with a total biomass of 104 g m(-2) (among 31 species captured). For the same period the year before, 0·3 individuals m(-2) and 3 g m(-2) were captured (38 species). The number of species showed significant time v. month interactions, assuming that fish species composition varied for both year and month. Total mean density and biomass showed significant differences for interaction time v. month, and density and biomass in the dredging month September 2001 in the main channel were scientifically different from other months. Interaction times v. area were significant for Cathorops spixii (increased biomass), Aspistor luniscutis (increased density), Menticirrhus americanus (decreased biomass) and Cynoscion leiarchus (decreased density and biomass). This suggests that during the dredging process there is a change in the structure of the demersal fish assemblage. The impact (damage and mortality) induced by dredging on the macrobenthic animals along the dredge path attracted adults of C. spixii that reached densities 10 times greater than in the year before. On the other hand, sciaenid species practically disappeared. To contribute to the conservation of the estuarine fish fauna, and maintain fisheries production of the Paranaguá Estuary and surrounding areas, it is recommended that, dredging should be done from the late rainy season to the early dry season. Decisions must take into account the ecological cycles of socio-economically important fish species and prioritize the safe disposal of dredged spoils. PMID:27241214

  5. Slope currents around the Kerguelen Islands from demersal longline fishing records

    NASA Astrophysics Data System (ADS)

    Park, Young-Hyang; Gasco, Nicolas; Duhamel, Guy

    2008-05-01

    The Kerguelen Plateau constitutes a natural obstacle for the eastward progress of the Antarctic Circumpolar Current, especially around the Kerguelen Islands. However, there is little quantitative knowledge of the current field around the islands due to lack of long-term current measurements. We performed a systematic analysis of a total of 28917 points of fishing gear drifts from setting and recovery positions of demersal longlines deployed between 2002 and 2007 for Patagonian Toothfish (Dissostichus eleginoides) fisheries in Kerguelen waters. This enabled the construction of a realistic field of depth-averaged time-mean slope currents along the 1000 m isobath all around the Kerguelen Islands. The strongest depth-mean velocities of 25 cm s-1 are associated with the Polar Front, which rounds the islands from the south and flows northward along the inner continental slope immediately east of the islands, strongly supporting previous hydrographic evidence. These results demonstrate the potential for hitherto unexploited historic longline drift data from demersal fishing grounds to provide valuable quantitative information on the regional circulation.

  6. Biophysical Factors Affecting the Distribution of Demersal Fish around the Head of a Submarine Canyon Off the Bonney Coast, South Australia

    PubMed Central

    Currie, David R.; McClatchie, Sam; Middleton, John F.; Nayar, Sasi

    2012-01-01

    We sampled the demersal fish community of the Bonney Canyon, South Australia at depths (100–1,500 m) and locations that are poorly known. Seventy-eight species of demersal fish were obtained from 12 depth-stratified trawls along, and to either side, of the central canyon axis. Distributional patterns in species richness and biomass were highly correlated. Three fish assemblage groupings, characterised by small suites of species with narrow depth distributions, were identified on the shelf, upper slope and mid slope. The assemblage groupings were largely explained by depth (ρw = 0.78). Compared to the depth gradient, canyon-related effects are weak or occur at spatial or temporal scales not sampled in this study. A conceptual physical model displayed features consistent with the depth zonational patterns in fish, and also indicated that canyon upwelling can occur. The depth zonation of the fish assemblage was associated with the depth distribution of water masses in the area. Notably, the mid-slope community (1,000 m) coincided with a layer of Antarctic Intermediate Water, the upper slope community (500 m) resided within the core of the Flinders Current, and the shelf community was located in a well-mixed layer of surface water (<450 m depth). PMID:22253907

  7. Taxonomic Distinctness of Demersal Fishes of the California Current: Moving Beyond Simple Measures of Diversity for Marine Ecosystem-Based Management

    PubMed Central

    Tolimieri, Nick; Anderson, Marti J.

    2010-01-01

    Background Large-scale patterns or trends in species diversity have long interested ecologists. The classic pattern is for diversity (e.g., species richness) to decrease with increasing latitude. Taxonomic distinctness is a diversity measure based on the relatedness of the species within a sample. Here we examined patterns of taxonomic distinctness in relation to latitude (ca. 32–48 °N) and depth (ca. 50–1220 m) for demersal fishes on the continental shelf and slope of the US Pacific coast. Methodology/Principal Findings Both average taxonomic distinctness (AvTD) and variation in taxonomic distinctness (VarTD) changed with latitude and depth. AvTD was highest at approximately 500 m and lowest at around 200 m bottom depth. Latitudinal trends in AvTD were somewhat weaker and were depth-specific. AvTD increased with latitude on the shelf (50–150 m) but tended to decrease with latitude at deeper depths. Variation in taxonomic distinctness (VarTD) was highest around 300 m. As with AvTD, latitudinal trends in VarTD were depth-specific. On the shelf (50–150 m), VarTD increased with latitude, while in deeper areas the patterns were more complex. Closer inspection of the data showed that the number and distribution of species within the class Chondrichthyes were the primary drivers of the overall patterns seen in AvTD and VarTD, while the relatedness and distribution of species in the order Scorpaeniformes appeared to cause the relatively low observed values of AvTD at around 200 m. Conclusions/Significance These trends contrast to some extent the patterns seen in earlier studies for species richness and evenness in demersal fishes along this coast and add to our understanding of diversity of the demersal fishes of the California Current. PMID:20498727

  8. Depth-related trends in morphological and functional diversity of demersal fish assemblages in the western Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Farré, Marc; Tuset, Víctor M.; Cartes, Joan E.; Massutí, Enric; Lombarte, Antoni

    2016-09-01

    The morphological and functional traits of fishes are key factors defining the ecological and biological habits of species within ecosystems. However, little is known about how the depth gradient affects these factors. In the present study, several demersal fish assemblages from the Balearic Islands (western Mediterranean Sea) along a wide depth range (40-2200 m) were morphologically, functionally and ecologically described. The morphological characterization of communities was performed using geometric morphometric methods, while the functional structures were obtained by the functional categorization of species and the application of principal coordinates analysis (PCoA). The results revealed that morphospaces presented less richness of body forms as depth increases, although they showed a progressive spreading of species toward the periphery, with a proliferation of more extreme body traits, demonstrating lower morphological redundancy. In addition, a trend toward the elongation of body shape was also observed with depth. Moreover, functional diversity increased with bathymetry up to 1400 m, where it sharply decreased downwards. This decrease was parallel to a progressive fall of H‧ (ecological diversity) up to 2200 m. Functional redundancy progressively decreased until the deepest assemblage (more constantly in the deeper levels), which was almost exclusively dominated by benthopelagic wandering species feeding on suprabenthos. Redundancy analysis (RDA) demonstrated that both morphological and functional spaces showed high variation along the bathymetric range. Mantel test indicated that the majority of species presented similar spatial distribution within the morphospace and functional space, although in the functional space the more abundant species were always located at the periphery. These results demonstrate that the assessment of the morpho-functional variation between marine communities helps to understand the processes that affect the structure and

  9. Estimation of Bottom Trawl Catch Efficiency for Two Demersal Fishes, Atlantic Croaker and White Perch in Chesapeake Bay

    EPA Science Inventory

    We present an efficiency analysis of a fisheries-independent demersal trawl survey in Chesapeake Bay, the largest estuary in the United States, that is presently being used for multi-species fisheries assessment and management. The manuscript presents an in situ analysis of demer...

  10. Demersal fish distribution and habitat use within and near Baltimore and Norfolk Canyons, U.S. Middle Atlantic Slope

    USGS Publications Warehouse

    Ross, Steve W.; Rhode, Mike; Quattrini, Andrea M.

    2015-01-01

    Numerous submarine canyons along the United States middle Atlantic continental margin support enhanced productivity, diverse and unique habitats, active fisheries, and are vulnerable to various anthropogenic disturbances. During two cruises (15 Aug–2 Oct 2012 and 30 Apr–27 May 2013), Baltimore and Norfolk canyons and nearby areas (including two cold seeps) were intensively surveyed to determine demersal fish distributions and habitat associations. Overall, 34 ROV dives (234–1612 m) resulted in 295 h of bottom video observations and numerous collections. These data were supplemented by 40, 30-min bottom trawl samples. Fish observations were assigned to five general habitat designations: 1) sand-mud (flat), 2) sloping sand-mud with burrows, 3) low profile gravel, rock, boulder, 4) high profile, canyon walls, rocks or ridges, and 5) seep-mixed hard and soft substrata, the later subdivided into seven habitats based on amounts of dead mussel and rock cover. The influence of corals, sponges and live mussels (seeps only) on fish distributions was also investigated. Both canyon areas supported abundant and diverse fish communities and exhibited a wide range of habitats, including extensive areas of deep-sea corals and sponges and two nearby methane seeps (380–430 m, 1455–1610 m). All methods combined yielded a total of 123 species of fishes, 12 of which are either new records for this region or have new range data. Depth was a major factor that separated the fish faunas into two zones with a boundary around 1400 m. Fishes defining the deeper zone included Lycodes sp.,Dicrolene introniger, Gaidropsaurus ensis, Hydrolagus affinis, Antimora rostrata, andAldrovandia sp. Fishes in the deep zone did not exhibit strong habitat affinities, despite the presence of a quite rugged, extensive methane seep. We propose that habitat specificity decreases with increasing depth. Fishes in the shallower zone, characterized by Laemonema sp., Phycis chesteri, Nezumia bairdii, Brosme

  11. Congruence in demersal fish, macroinvertebrate, and macroalgal community turnover on shallow temperate reefs.

    PubMed

    Thomson, Russell J; Hill, Nicole A; Leaper, Rebecca; Ellis, Nick; Pitcher, C Roland; Barrett, Neville S; Edgar, Graham J

    2014-03-01

    To support coastal planning through improved understanding of patterns of biotic and abiotic surrogacy at broad scales, we used gradient forest modeling (GFM) to analyze and predict spatial patterns of compositional turnover of demersal fishes, macroinvertebrates, and macroalgae on shallow, temperate Australian reefs. Predictive models were first developed using environmental surrogates with estimates of prediction uncertainty, and then the efficacy of the three assemblages as biosurrogates for each other was assessed. Data from underwater visual surveys of subtidal rocky reefs were collected from the southeastern coastline of continental Australia (including South Australia and Victoria) and the northern coastline of Tasmania. These data were combined with 0.01 degree-resolution gridded environmental variables to develop statistical models of compositional turnover (beta diversity) using GFM. GFM extends the machine learning, ensemble tree-based method of random forests (RF), to allow the simultaneous modeling of multiple taxa. The models were used to generate predictions of compositional turnover for each of the three assemblages within unsurveyed areas across the 6600 km of coastline in the region of interest. The most important predictor for all three assemblages was variability in sea surface temperature (measured as standard deviation from measures taken interannually). Spatial predictions of compositional turnover within unsurveyed areas across the region of interest were remarkably congruent across the three taxa. However, the greatest uncertainty in these predictions varied in location among the different assemblages. Pairwise congruency comparisons of observed and predicted turnover among the three assemblages showed that invertebrate and macroalgal biodiversity were most similar, followed by fishes and macroalgae, and lastly fishes and invertebrate biodiversity, suggesting that of the three assemblages, macroalgae would make the best biosurrogate for

  12. Evaluating light-based geolocation for estimating demersal fish movements in high latitudes

    USGS Publications Warehouse

    Seitz, Andrew C; Norcross, B.L.; Wilson, D.; Nielsen, Jennifer L.

    2006-01-01

    We evaluated light-based geolocation estimates from pop-up satellite tags in high latitudesbecause some of the largest fisheries in the world are in areas where this technique has not been assessed. Daily longitude and latitude were estimated by using two Wildlife Computers software programs: 1) Argos Message Processor (AMP), which summarizes light intensity data transmitted to satellites, and 2) Time Series Processor (TSP), which uses more detailed data obtained from retrieved tags. Three experiments were conducted in the northern Gulf of Alaska using tags placed on 1) Pacific halibut in outdoor aquaria, 2) a fixed mooring line at various depths and 3) wild Pacific halibut. TSP performed better than AMP because the percentage of days with geolocation estimates was greater and the mean error magnitude and bias were smaller for TSP and increased with depth for both programs; however, latitude errors were much greater than longitude errors at all depths. Light-based geolocation enabled us to discern basin-scale movements and showed that the Pacific halibut in our study remained within the Gulf of Alaska. We conclude that this technique provides a feasible method for inferring large-scale population structure for demersal fishes in high latitudes. 

  13. Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life.

    PubMed

    Figueras, Antonio; Robledo, Diego; Corvelo, André; Hermida, Miguel; Pereiro, Patricia; Rubiolo, Juan A; Gómez-Garrido, Jèssica; Carreté, Laia; Bello, Xabier; Gut, Marta; Gut, Ivo Glynne; Marcet-Houben, Marina; Forn-Cuní, Gabriel; Galán, Beatriz; García, José Luis; Abal-Fabeiro, José Luis; Pardo, Belen G; Taboada, Xoana; Fernández, Carlos; Vlasova, Anna; Hermoso-Pulido, Antonio; Guigó, Roderic; Álvarez-Dios, José Antonio; Gómez-Tato, Antonio; Viñas, Ana; Maside, Xulio; Gabaldón, Toni; Novoa, Beatriz; Bouza, Carmen; Alioto, Tyler; Martínez, Paulino

    2016-06-01

    The turbot is a flatfish (Pleuronectiformes) with increasing commercial value, which has prompted active genomic research aimed at more efficient selection. Here we present the sequence and annotation of the turbot genome, which represents a milestone for both boosting breeding programmes and ascertaining the origin and diversification of flatfish. We compare the turbot genome with model fish genomes to investigate teleost chromosome evolution. We observe a conserved macrosyntenic pattern within Percomorpha and identify large syntenic blocks within the turbot genome related to the teleost genome duplication. We identify gene family expansions and positive selection of genes associated with vision and metabolism of membrane lipids, which suggests adaptation to demersal lifestyle and to cold temperatures, respectively. Our data indicate a quick evolution and diversification of flatfish to adapt to benthic life and provide clues for understanding their controversial origin. Moreover, we investigate the genomic architecture of growth, sex determination and disease resistance, key traits for understanding local adaptation and boosting turbot production, by mapping candidate genes and previously reported quantitative trait loci. The genomic architecture of these productive traits has allowed the identification of candidate genes and enriched pathways that may represent useful information for future marker-assisted selection in turbot. PMID:26951068

  14. Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life

    PubMed Central

    Figueras, Antonio; Robledo, Diego; Corvelo, André; Hermida, Miguel; Pereiro, Patricia; Rubiolo, Juan A.; Gómez-Garrido, Jèssica; Carreté, Laia; Bello, Xabier; Gut, Marta; Gut, Ivo Glynne; Marcet-Houben, Marina; Forn-Cuní, Gabriel; Galán, Beatriz; García, José Luis; Abal-Fabeiro, José Luis; Pardo, Belen G.; Taboada, Xoana; Fernández, Carlos; Vlasova, Anna; Hermoso-Pulido, Antonio; Guigó, Roderic; Álvarez-Dios, José Antonio; Gómez-Tato, Antonio; Viñas, Ana; Maside, Xulio; Gabaldón, Toni; Novoa, Beatriz; Bouza, Carmen; Alioto, Tyler; Martínez, Paulino

    2016-01-01

    The turbot is a flatfish (Pleuronectiformes) with increasing commercial value, which has prompted active genomic research aimed at more efficient selection. Here we present the sequence and annotation of the turbot genome, which represents a milestone for both boosting breeding programmes and ascertaining the origin and diversification of flatfish. We compare the turbot genome with model fish genomes to investigate teleost chromosome evolution. We observe a conserved macrosyntenic pattern within Percomorpha and identify large syntenic blocks within the turbot genome related to the teleost genome duplication. We identify gene family expansions and positive selection of genes associated with vision and metabolism of membrane lipids, which suggests adaptation to demersal lifestyle and to cold temperatures, respectively. Our data indicate a quick evolution and diversification of flatfish to adapt to benthic life and provide clues for understanding their controversial origin. Moreover, we investigate the genomic architecture of growth, sex determination and disease resistance, key traits for understanding local adaptation and boosting turbot production, by mapping candidate genes and previously reported quantitative trait loci. The genomic architecture of these productive traits has allowed the identification of candidate genes and enriched pathways that may represent useful information for future marker-assisted selection in turbot. PMID:26951068

  15. North Atlantic demersal deep-water fish distribution and biology: present knowledge and challenges for the future.

    PubMed

    Bergstad, O A

    2013-12-01

    This paper summarizes knowledge and knowledge gaps on benthic and benthopelagic deep-water fishes of the North Atlantic Ocean, i.e. species inhabiting deep continental shelf areas, continental and island slopes, seamounts and the Mid-Atlantic Ridge. While several studies demonstrate that distribution patterns are species specific, several also show that assemblages of species can be defined and such assemblages are associated with circulatory features and water mass distributions. In many subareas, sampling has, however, been scattered, restricted to shallow areas or soft substrata, and results from different studies tend to be difficult to compare quantitatively because of sampler differences. Particularly, few studies have been conducted on isolated deep oceanic seamounts and in Arctic deep-water areas. Time series of data are very few and most series are short. Recent studies of population structure of widely distributed demersal species show less than expected present connectivity and considerable spatial genetic heterogeneity and complexity for some species. In other species, genetic homogeneity across wide ranges was discovered. Mechanisms underlying the observed patterns have been proposed, but to test emerging hypotheses more species should be investigated across their entire distribution ranges. Studies of population biology reveal greater diversity in life-history strategies than often assumed, even between co-occurring species of the same family. Some slope and ridge-associated species are rather short-lived, others very long-lived, and growth patterns also show considerable variation. Recent comparative studies suggest variation in life-history strategies along a continuum correlated with depth, ranging from shelf waters to the deep sea where comparatively more species have extended lifetimes, and slow rates of growth and reproduction. Reproductive biology remains too poorly known for most deep-water species, and temporal variation in recruitment has

  16. Bathyal demersal fishes of Charlie Gibbs Fracture Zone region (49-54°N) of the Mid-Atlantic Ridge, I: Results from trawl surveys

    NASA Astrophysics Data System (ADS)

    Cousins, Nicola J.; Shields, Mark A.; Crockard, Deborah; Priede, Imants G.

    2013-12-01

    Demersal fishes were sampled by single-warp otter trawl (OTSB) at three sites on the Mid-Atlantic Ridge (MAR), to the northeast (NE), northwest (NW) and southeast (SE) of the Charlie-Gibbs Fracture Zone at approximately 2500 m depth. The mean abundance was 4109 fish km-2 (SD 3714) and biomass 897.1 kg km-2 (SD 842.9) compared with 1996 fish km-2 (SD 1497) and 721.2 kg km-2 (SD 387) at the same depth on the Porcupine Seabight (PSB) segment of the NE Atlantic Ocean margin from previous studies. There was no significant difference in biomass or abundance between the three sites on the MAR, nor in comparison with the ocean margin. A total of fish 22 species were recorded at the three MAR sites with evidence of highest species richness at the SE site. No unique species were found on the ridge; but there were differences in species composition between the PSB and the MAR. Coryphaenoides brevibarbis and Antimora rostrata were important at both the NE and NW trawl sites on the MAR whereas Halosauropsis macrochir was most important in the SE. We conclude that the MAR is an important habitat for species otherwise confined to narrow strips of appropriate depth around the North Atlantic Ocean margins. The MAR supports similar population densities to ocean margin settings but with differences in relative importance of different species between regions.

  17. Explaining bathymetric diversity patterns in marine benthic invertebrates and demersal fishes: physiological contributions to adaptation of life at depth

    PubMed Central

    Brown, Alastair; Thatje, Sven

    2014-01-01

    Bathymetric biodiversity patterns of marine benthic invertebrates and demersal fishes have been identified in the extant fauna of the deep continental margins. Depth zonation is widespread and evident through a transition between shelf and slope fauna from the shelf break to 1000 m, and a transition between slope and abyssal fauna from 2000 to 3000 m; these transitions are characterised by high species turnover. A unimodal pattern of diversity with depth peaks between 1000 and 3000 m, despite the relatively low area represented by these depths. Zonation is thought to result from the colonisation of the deep sea by shallow-water organisms following multiple mass extinction events throughout the Phanerozoic. The effects of low temperature and high pressure act across hierarchical levels of biological organisation and appear sufficient to limit the distributions of such shallow-water species. Hydrostatic pressures of bathyal depths have consistently been identified experimentally as the maximum tolerated by shallow-water and upper bathyal benthic invertebrates at in situ temperatures, and adaptation appears required for passage to deeper water in both benthic invertebrates and demersal fishes. Together, this suggests that a hyperbaric and thermal physiological bottleneck at bathyal depths contributes to bathymetric zonation. The peak of the unimodal diversity–depth pattern typically occurs at these depths even though the area represented by these depths is relatively low. Although it is recognised that, over long evolutionary time scales, shallow-water diversity patterns are driven by speciation, little consideration has been given to the potential implications for species distribution patterns with depth. Molecular and morphological evidence indicates that cool bathyal waters are the primary site of adaptive radiation in the deep sea, and we hypothesise that bathymetric variation in speciation rates could drive the unimodal diversity–depth pattern over time

  18. Explaining bathymetric diversity patterns in marine benthic invertebrates and demersal fishes: physiological contributions to adaptation of life at depth.

    PubMed

    Brown, Alastair; Thatje, Sven

    2014-05-01

    Bathymetric biodiversity patterns of marine benthic invertebrates and demersal fishes have been identified in the extant fauna of the deep continental margins. Depth zonation is widespread and evident through a transition between shelf and slope fauna from the shelf break to 1000 m, and a transition between slope and abyssal fauna from 2000 to 3000 m; these transitions are characterised by high species turnover. A unimodal pattern of diversity with depth peaks between 1000 and 3000 m, despite the relatively low area represented by these depths. Zonation is thought to result from the colonisation of the deep sea by shallow-water organisms following multiple mass extinction events throughout the Phanerozoic. The effects of low temperature and high pressure act across hierarchical levels of biological organisation and appear sufficient to limit the distributions of such shallow-water species. Hydrostatic pressures of bathyal depths have consistently been identified experimentally as the maximum tolerated by shallow-water and upper bathyal benthic invertebrates at in situ temperatures, and adaptation appears required for passage to deeper water in both benthic invertebrates and demersal fishes. Together, this suggests that a hyperbaric and thermal physiological bottleneck at bathyal depths contributes to bathymetric zonation. The peak of the unimodal diversity-depth pattern typically occurs at these depths even though the area represented by these depths is relatively low. Although it is recognised that, over long evolutionary time scales, shallow-water diversity patterns are driven by speciation, little consideration has been given to the potential implications for species distribution patterns with depth. Molecular and morphological evidence indicates that cool bathyal waters are the primary site of adaptive radiation in the deep sea, and we hypothesise that bathymetric variation in speciation rates could drive the unimodal diversity-depth pattern over time. Thermal

  19. The seascape of demersal fish nursery areas in the North Mediterranean Sea, a first step towards the implementation of spatial planning for trawl fisheries.

    PubMed

    Colloca, Francesco; Garofalo, Germana; Bitetto, Isabella; Facchini, Maria Teresa; Grati, Fabio; Martiradonna, Angela; Mastrantonio, Gianluca; Nikolioudakis, Nikolaos; Ordinas, Francesc; Scarcella, Giuseppe; Tserpes, George; Tugores, M Pilar; Valavanis, Vasilis; Carlucci, Roberto; Fiorentino, Fabio; Follesa, Maria C; Iglesias, Magdalena; Knittweis, Leyla; Lefkaditou, Eugenia; Lembo, Giuseppe; Manfredi, Chiara; Massutí, Enric; Pace, Marie Louise; Papadopoulou, Nadia; Sartor, Paolo; Smith, Christopher J; Spedicato, Maria Teresa

    2015-01-01

    The identification of nursery grounds and other essential fish habitats of exploited stocks is a key requirement for the development of spatial conservation planning aimed at reducing the adverse impact of fishing on the exploited populations and ecosystems. The reduction in juvenile mortality is particularly relevant in the Mediterranean and is considered as one of the main prerequisites for the future sustainability of trawl fisheries. The distribution of nursery areas of 11 important commercial species of demersal fish and shellfish was analysed in the European Union Mediterranean waters using time series of bottom trawl survey data with the aim of identifying the most persistent recruitment areas. A high interspecific spatial overlap between nursery areas was mainly found along the shelf break of many different sectors of the Northern Mediterranean indicating a high potential for the implementation of conservation measures. Overlap of the nursery grounds with existing spatial fisheries management measures and trawl fisheries restricted areas was also investigated. Spatial analyses revealed considerable variation depending on species and associated habitat/depth preferences with increased protection seen in coastal nurseries and minimal protection seen for deeper nurseries (e.g. Parapenaeus longirostris 6%). This is partly attributed to existing environmental policy instruments (e.g. Habitats Directive and Mediterranean Regulation EC 1967/2006) aiming at minimising impacts on coastal priority habitats such as seagrass, coralligenous and maerl beds. The new knowledge on the distribution and persistence of demersal nurseries provided in this study can support the application of spatial conservation measures, such as the designation of no-take Marine Protected Areas in EU Mediterranean waters and their inclusion in a conservation network. The establishment of no-take zones will be consistent with the objectives of the Common Fisheries Policy applying the ecosystem

  20. The Seascape of Demersal Fish Nursery Areas in the North Mediterranean Sea, a First Step Towards the Implementation of Spatial Planning for Trawl Fisheries

    PubMed Central

    Colloca, Francesco; Garofalo, Germana; Bitetto, Isabella; Facchini, Maria Teresa; Grati, Fabio; Martiradonna, Angela; Mastrantonio, Gianluca; Nikolioudakis, Nikolaos; Ordinas, Francesc; Scarcella, Giuseppe; Tserpes, George; Tugores, M. Pilar; Valavanis, Vasilis; Carlucci, Roberto; Fiorentino, Fabio; Follesa, Maria C.; Iglesias, Magdalena; Knittweis, Leyla; Lefkaditou, Eugenia; Lembo, Giuseppe; Manfredi, Chiara; Massutí, Enric; Pace, Marie Louise; Papadopoulou, Nadia; Sartor, Paolo; Smith, Christopher J.; Spedicato, Maria Teresa

    2015-01-01

    The identification of nursery grounds and other essential fish habitats of exploited stocks is a key requirement for the development of spatial conservation planning aimed at reducing the adverse impact of fishing on the exploited populations and ecosystems. The reduction in juvenile mortality is particularly relevant in the Mediterranean and is considered as one of the main prerequisites for the future sustainability of trawl fisheries. The distribution of nursery areas of 11 important commercial species of demersal fish and shellfish was analysed in the European Union Mediterranean waters using time series of bottom trawl survey data with the aim of identifying the most persistent recruitment areas. A high interspecific spatial overlap between nursery areas was mainly found along the shelf break of many different sectors of the Northern Mediterranean indicating a high potential for the implementation of conservation measures. Overlap of the nursery grounds with existing spatial fisheries management measures and trawl fisheries restricted areas was also investigated. Spatial analyses revealed considerable variation depending on species and associated habitat/depth preferences with increased protection seen in coastal nurseries and minimal protection seen for deeper nurseries (e.g. Parapenaeus longirostris 6%). This is partly attributed to existing environmental policy instruments (e.g. Habitats Directive and Mediterranean Regulation EC 1967/2006) aiming at minimising impacts on coastal priority habitats such as seagrass, coralligenous and maerl beds. The new knowledge on the distribution and persistence of demersal nurseries provided in this study can support the application of spatial conservation measures, such as the designation of no-take Marine Protected Areas in EU Mediterranean waters and their inclusion in a conservation network. The establishment of no-take zones will be consistent with the objectives of the Common Fisheries Policy applying the ecosystem

  1. When does fishing lead to more fish? Community consequences of bottom trawl fisheries in demersal food webs.

    PubMed

    van Denderen, P Daniel; van Kooten, Tobias; Rijnsdorp, Adriaan D

    2013-10-22

    Bottom trawls are a globally used fishing gear that physically disturb the seabed and kill non-target organisms, including those that are food for the targeted fish species. There are indications that ensuing changes to the benthic invertebrate community may increase the availability of food and promote growth and even fisheries yield of target fish species. If and how this occurs is the subject of ongoing debate, with evidence both in favour and against. We model the effects of trawling on a simple ecosystem of benthivorous fish and two food populations (benthos), susceptible and resistant to trawling. We show that the ecosystem response to trawling depends on whether the abundance of benthos is top-down or bottom-up controlled. Fishing may result in higher fish abundance, higher (maximum sustainable) yield and increased persistence of fish when the benthos which is the best-quality fish food is also more resistant to trawling. These positive effects occur in bottom-up controlled systems and systems with limited impact of fish feeding on benthos, resembling bottom-up control. Fishing leads to lower yields and fish persistence in all configurations where susceptible benthos are more profitable prey. Our results highlight the importance of mechanistic ecosystem knowledge as a requirement for successful management. PMID:24004941

  2. When does fishing lead to more fish? Community consequences of bottom trawl fisheries in demersal food webs

    PubMed Central

    van Denderen, P. Daniel; van Kooten, Tobias; Rijnsdorp, Adriaan D.

    2013-01-01

    Bottom trawls are a globally used fishing gear that physically disturb the seabed and kill non-target organisms, including those that are food for the targeted fish species. There are indications that ensuing changes to the benthic invertebrate community may increase the availability of food and promote growth and even fisheries yield of target fish species. If and how this occurs is the subject of ongoing debate, with evidence both in favour and against. We model the effects of trawling on a simple ecosystem of benthivorous fish and two food populations (benthos), susceptible and resistant to trawling. We show that the ecosystem response to trawling depends on whether the abundance of benthos is top-down or bottom-up controlled. Fishing may result in higher fish abundance, higher (maximum sustainable) yield and increased persistence of fish when the benthos which is the best-quality fish food is also more resistant to trawling. These positive effects occur in bottom-up controlled systems and systems with limited impact of fish feeding on benthos, resembling bottom-up control. Fishing leads to lower yields and fish persistence in all configurations where susceptible benthos are more profitable prey. Our results highlight the importance of mechanistic ecosystem knowledge as a requirement for successful management. PMID:24004941

  3. Energy profiling of demersal fish: a case-study in wind farm artificial reefs.

    PubMed

    De Troch, Marleen; Reubens, Jan T; Heirman, Elke; Degraer, Steven; Vincx, Magda

    2013-12-01

    The construction of wind farms introduces artificial hard substrates in sandy sediments. As Atlantic cod (Gadus morhua) and pouting (Trisopterus luscus) tend to aggregate in order to feed around these reefs, energy profiling and trophic markers were applied to study their feeding ecology in a wind farm in the Belgian part of the North Sea. The proximate composition (carbohydrates, proteins and lipids) differed significantly between liver and muscle tissue but not between fish species or between their potential prey species. Atlantic cod showed to consume more energy than pouting. The latter had a higher overall energy reserve and can theoretically survive twice as long on the available energy than cod. In autumn, both fish species could survive longer on their energy than in spring. Polyunsaturated fatty acids were found in high concentrations in fish liver. The prey species Jassa and Pisidia were both rich in EPA while Jassa had a higher DHA content than Pisidia. Energy profiling supported the statement that wind farm artificial reefs are suitable feeding ground for both fish species. Sufficient energy levels were recorded and there is no indication of competition. PMID:24210053

  4. A multi-criteria assessment of fishing gear impacts in demersal fisheries.

    PubMed

    Innes, James P; Pascoe, Sean

    2010-01-01

    Fishing gears have multiple impacts on the marine environment, and policies to reduce these impacts through modifying fishing gears are becoming common place. Different modifications result in different changes in the set of environmental impacts, and imply different sets of costs and benefits for different stakeholder groups. In this study, the analytic hierarchy process (AHP) is used to quantify the relative importance of the environmental impacts of fishing to different stakeholder groups. Forty eight individuals representing six different stakeholder groups (ecologists, biologists, economists, gear technologists, fishers and fisheries managers) were surveyed. As expected, fishers and gear technologists placed substantially greater importance on reducing discarding of commercial fish species than on habitat damage. Priorities of other stakeholder groups varied, but all placed greater priority on habitats than the commercial sector. The results suggest that management aimed at reducing environmental impacts of fishing broader than just discarding is appropriate, but such moves are likely to be opposed by the fishing industry. The derived weights also have a direct application to fisheries management, as they allow otherwise non-commensurate impacts to be aggregated into an overall impact to compare environmental benefits from alternative modifications of fishing gear. PMID:20022161

  5. Demersal Fisheries of the Arabian Sea, the Gulf of Oman and the Arabian Gulf

    NASA Astrophysics Data System (ADS)

    Siddeek, M. S. M.; Fouda, M. M.; Hermosa, G. V.

    1999-08-01

    The demersal fisheries of the Arabian Sea, the Gulf of Oman and the Arabian Gulf are reviewed. The region comprises eight countries: Oman, United Arab Emirates (U.A.E.), Qatar, Saudi Arabia, Bahrain, Kuwait, Iraq and Iran. Over 350 commercial fish species, eight shrimp species, two spiny lobster species, one shovel nose lobster species, one cuttlefish species, one crab species, and one abalone species support the demersal fisheries in the continental shelves of the three regions. Artisanal and industrial vessels with over 120 000 fishermen were involved in demersal fisheries. Fishing boats include fish and shrimp trawlers (wooden and steel hulled), large wooden boats (dhow) with inboard engines, small dhows with outboard engines, and fibreglass boats. Fishing gear consists of trawls, bottom gill nets, traps (wire mesh and plastic types), barrier traps, hand lines, and bare hands and knives (to dislodge abalone). Demersal fish (primarily Lethrinidae, Sparidae, Serranidae, Siganidae, Sciaenidae, Stromateidae, Lutjanidae, Trichiuridae, and Nemipteridae) and shrimp (primarily Penaeus semisulcatus, Metapenaeus affinis, Parapenaeopsis stylifera, and Penaeus merguiensis) were the two commercial demersal resources. Approximately 198 000-214 000 tonnes (t) of demersals were landed annually during 1988-1993, accounting for nearly 40% of the total marine landings (475 000-552 000 t). This percentage, however varied among countries: 25% in Oman, 32% in U.A.E., 71% in Qatar, 52% in Saudi Arabia, 56% in Bahrain, 55% in Kuwait, close to 100% in Iraq, and 41% in Iran. Fishing effort on certain stocks may have been below the optimum level (e.g. certain Omani demersal fish), near the optimum level (e.g. Omani shrimp), or above the optimum level (e.g. Arabian Gulf shrimp and demersal fish). Overexploitation led to restriction of fishing effort by limiting fishing licences, regulating fishing gear (mesh size) and capture size, closing fishing areas, restricting fishing season, and

  6. Bathyal demersal fishes of Charlie-Gibbs Fracture Zone region (49-54°N) of the Mid-Atlantic Ridge: II. Baited camera lander observations

    NASA Astrophysics Data System (ADS)

    Cousins, Nicola J.; Linley, Thomas D.; Jamieson, Alan J.; Bagley, Philip M.; Blades, Hannah; Box, Tetrienne; Chambers, Rosanna; Ford, Alexander; Shields, Mark A.; Priede, Imants G.

    2013-12-01

    Demersal fishes appearing at baited cameras at 2500 m depth either side of the axis of the Northern Mid-Atlantic Ridge (MAR) at 54°N and 49°, north and south of the Charlie Gibbs fracture Zone respectively, showed significant differences in species composition between north and south. A total of 19 taxa were observed, with Hydrolagus affinis, Bathyraja richardsoni, Halosauropsis macrochir, Histobranchus bathybius, Synaphobranchus kaupii, Coryphaenoides armatus, Corphaenoides brevibarbis, Coryphaenoides mediterraneus/leptolepis, Antimora rostrata and Spectrunculus crassa occurring at all locations. The total species assemblage comprised 40% of species captured by trawl at the same locations indicating a high proportion of scavenging species on the MAR. The most abundant was C. armatus showing shorter arrival times and larger body size in the north, suggestive of higher population density and higher food availability. The next most abundant species A. rostrata however showed faster arrival in the south but larger size in the North. No differences could be discerned between stations at the same latitude east and west of MAR axis.

  7. Benthos and demersal fish habitats in the German Exclusive Economic Zone (EEZ) of the North Sea

    NASA Astrophysics Data System (ADS)

    Neumann, Hermann; Reiss, Henning; Ehrich, Siegfried; Sell, Anne; Panten, Kay; Kloppmann, Matthias; Wilhelms, Ingo; Kröncke, Ingrid

    2013-09-01

    We compiled data from different monitoring surveys to analyse and compare community and diversity patterns of fish, epi- and infauna in the German Exclusive Economic Zone (EEZ) of the North Sea in order to identify benthic habitats common to all faunal components. We found congruent community patterns of fish, epi- and infauna for the coastal waters, the Oysterground and the area called "Duck's Bill", which coincided with specific abiotic characteristics of these regions. The three regions were defined as special habitats for fish, epi- and infauna species in the German EEZ. The differences in the seasonal variability of abiotic factors seem to be the most important discriminating abiotic characteristic for the three habitats. The spatial distribution of fish, epifauna and infauna communities remained stable over time although habitat characteristics such as sea surface temperature increased due to climate change. However, it is expected that the coastal habitat will be more sensitive to future climate change effects in contrast to the Oysterground and Duck's Bill habitat.

  8. Habitat Selection and Temporal Abundance Fluctuations of Demersal Cartilaginous Species in the Aegean Sea (Eastern Mediterranean)

    PubMed Central

    Maravelias, Christos D.; Tserpes, George; Pantazi, Maria; Peristeraki, Panagiota

    2012-01-01

    Predicting the occurrence of keystone top predators in a multispecies marine environment, such as the Mediterranean Sea, can be of considerable value to the long-term sustainable development of the fishing industry and to the protection of biodiversity. We analysed fisheries independent scientific bottom trawl survey data of two of the most abundant cartilaginous fish species (Scyliorhinus canicula, Raja clavata) in the Aegean Sea covering an 11-year sampling period. The current findings revealed a declining trend in R. clavata and S. canicula abundance from the late ′90 s until 2004. Habitats with the higher probability of finding cartilaginous fish present were those located in intermediate waters (depth: 200–400 m). The present results also indicated a preferential species' clustering in specific geographic and bathymetric regions of the Aegean Sea. Depth appeared to be one of the key determining factors for the selection of habitats for all species examined. With cartilaginous fish species being among the more biologically sensitive fish species taken in European marine fisheries, our findings, which are based on a standardized scientific survey, can contribute to the rational exploitation and management of their stocks by providing important information on temporal abundance trends and habitat preferences. PMID:22536389

  9. Influence of the hydrodynamic conditions on the accessibility of Aristeus antennatus and other demersal species to the deep water trawl fishery off the Balearic Islands (western Mediterranean)

    NASA Astrophysics Data System (ADS)

    Amores, Angel; Rueda, Lucía; Monserrat, Sebastià; Guijarro, Beatriz; Pasqual, Catalina; Massutí, Enric

    2014-10-01

    Monthly catches per unit of effort (CPUE) of adult red shrimp (Aristeus antennatus), reported in the deep water bottom trawl fishery developed on the Sóller fishing ground off northern Mallorca (Western Mediterranean), and the mean ocean surface vorticity in the surrounding areas are compared between 2000 and 2010. A good correlation is found between the rises in the surrounding surface vorticity and the drops in the CPUE of the adult red shrimp. This correlation could be explained by assuming that most of the surface vorticity episodes could reach the bottom, increasing the seabed velocities and producing sediment resuspension, which could affect the near bottom water turbidity. A. antennatus would respond to this increased turbidity disappearing from the fishing grounds, probably moving downwards to the deeper waters. This massive displacement of red shrimp specimens away from the fishing grounds would consequently decrease their accessibility to fishing exploitation. Similar although more intense responses have been observed during the downslope shelf dense water current episodes that occurred in a submarine canyon, northeast of the Iberian peninsula. The proposed mechanism suggesting how the surface vorticity observed can affect the bottom sediments is investigated using a year-long moored near-bottom current meter and a sediment trap moored near the fishing grounds. The relationship between vorticity and catches is also explored for fish species (Galeus melastomus, Micromesistius poutassou, Phycis blennoides) and other crustacean (Geryon longipes and Nephrops norvegicus), considered as by-catch of the deep water fishery in the area. Results appear to support the suggestion that the water turbidity generated by the vorticity episodes is significant enough to affect the dynamics of the demersal species.

  10. Sidescan sonar as a tool for detection of demersal fish habitats

    USGS Publications Warehouse

    Able, Kenneth W.; Twichell, David C.; Grimes, Churchill B.; Jones, R. S.

    1987-01-01

    Sidescan sonar can be an effective tool for the determination of the habitat distribution of commercially important species.  This technique has the advantage of rapidly mapping large areas of the seafloor.  Sidescan images (sonographs) may also help to identify appropriate fishing gears for different types of seafloor or areas to be avoided with certain types of gears.  During the early stages of exploration, verification of sidescan sonar sonographs is critical to successful identification of important habitats.  Tilefishes (Lopholatilus and Caulolatilus) are especially good target species because the construct large burrows in the seafloor or live around boulders, both of which are easily detectable on sonographs.  In some special circumstances the estimates of tilefish burrow densities from sonographs can be used to estimate standing stock. In many localities the burrow and boulder habitats of tilefish are shared with other commercially important species such as American lobsters, Homarus americanus; cusk, Brosme brosme; and ocean pout, Macrozoarces americanus.

  11. Pelagic to demersal transition in a coral-reef fish, the orbicular batfish Platax orbicularis.

    PubMed

    Leis, J M; Hay, A C; Sasal, P; Hicks, A S; Galzin, R

    2013-09-01

    Behavioural and ecological observations were made on young, reared Platax orbicularis in Opunohu Bay, Moorea, French Polynesia, during their transition from the pelagic, dispersive stage to the reef-orientated demersal stage. Seventy-two young P. orbicularis (17-75 mm standard length, LS ) were released in the pelagic zone and 20 (40-70 mm LS ) adjacent to the reefs. Swimming speed was slow (mean 5·2 cm s(-1) ) and independent of size. An ontogenetic descent was observed: the smallest P. orbicularis swam at the surface, medium-sized P. orbicularis swam in midwater (mean 5-13 m) and the largest P. orbicularis swam to the bottom, where many lay on their sides. Platax orbicularis swam southerly on average, away from the ocean and into the bay. Smaller P. orbicularis were more likely to swim directionally than larger individuals. Young P. orbicularis released near reef edges swam at similar, but more variable speeds (mean 6·6 cm s(-1) ). About half of those released near reefs swam away, but fewer swam away from an inshore fringing reef than from a patch reef near the bay mouth. Many P. orbicularis swam up the slope onto the reef top, but the little settlement observed was near the reef base. Average, near-reef swimming direction was also southerly. Some reef residents, in particular the triggerfish Balistapus undulatus, harassed young P. orbicularis. PMID:23991868

  12. DIETARY ACCUMULATION OF PCBS FROM A CONTAMINATED SEDIMENT SOURCE BY A DEMERSAL FISH ('LEIOSTOMUS XANTHURUS')

    EPA Science Inventory

    Accumulation and dietary transfer of PCBs from contaminated harbor sediments were studied in a laboratory food chain. Results demonstrate that contaminated sediments serve as a source of PCBs for uptake and trophic transfer in marine systems. Fish exposed to PCB-contaminated sedi...

  13. Exxon Valdez oil spill. State/federal natural resource damage assessment. Injury to demersal rockfish and shallow reef habitats in Prince William Sound, 1989-1991. Subtidal study number 6. Fish/shellfish study number 17. Final report

    SciTech Connect

    1994-09-01

    Demersal rockfish (Sebastes spp.) in Prince William Sound were studied from 1989 through 1991 to assess injury due to the Exxon Valdez oil spill. Injury was assessed by establishing the exposure of rockfish to petroleum hydrocarbons and then determining if any histopathological lesions occurred with increased frequency in fish from sites with oil-exposed fish.

  14. Efficacy of a vacuum benthos sampler for collecting demersal fish eggs from gravel substratum

    USGS Publications Warehouse

    Ruetz, C. R., III; Jennings, C.A.

    1997-01-01

    We used two densities of eggs (low=900 eggs/m2; high=5100 eggs/m2) in laboratory experiments to estimate the recovery efficiency of the Brown benthos sampler for collecting fish eggs from gravel substrate and to determine if differences (e.g., 5-fold) in egg density in the substratum could be detected with the sampler. The mean egg recovery efficiency of the sampler in the low and high density treatments was 30% (SE=8.7) and 35% (SE=3.8), respectively. The difference between the treatment means was not significant. Therefore, data from the two treatments were pooled and used to estimate the recovery efficiency of the sampler (32.7%, SE=4.4). However, we were able to detect a 5?? difference in the number of eggs collected with the sampler between the two treatments. Our estimate of the recovery efficiency of the sampler for collecting fish eggs was less than those reported for the sampler's efficiency for collecting benthic macroinvertebrates. The low recovery efficiency of the sampler for collecting fish eggs does not lessen the utility of the device. Rather, ecologists planning to use the sampler must estimate the recovery efficiency of target fauna, especially if density estimates are to be calculated, because recovery efficiency probably is less than 100%. ?? Munksgaard, 1997.

  15. Bioaccumulation of butyltins and liver damage in the demersal fish Cathorops spixii (Siluriformes, Ariidae).

    PubMed

    Dos Santos, Dayana Moscardi; Santos, Gustavo Souza; Cestari, Marta Margarete; de Oliveira Ribeiro, Ciro Alberto; de Assis, Helena Cristina Silva; Yamamoto, Flavia; Guiloski, Izonete Cristina; de Marchi, Mary Rosa Rodrigues; Montone, Rosalinda Carmela

    2014-02-01

    The toxicity of butyltin compounds (BTs), mainly tributyltin (TBT), has been reported in different organisms. However, such an analysis in fish after field exposure with reference to the related biomarkers has not been commonly observed in the literature. This study presents the uptake of BTs in the liver of a neotropical marine catfish Cathorops spixii in Paranagua Bay, an important estuarine system located in southern Brazil. Two different areas, close to and distant from the harbor, were used for chemical analysis evaluation of hepatotoxicity through genetic, enzymatic, and histopathological biomarkers. The presence of polycyclic aromatic hydrocarbons in bile was also considered as a biomarker. The results showed a significant relationship between TBT levels and the inhibition of biotransformation enzymes and high occurrence of melanomacrophages in fish collected close to the harbor site. These effects were linked to the absence of TBT metabolites in the liver. In the second site, the presence of DBT was associated with an increase in EROD and GST activity. The larger amount of DNA damage as well as the highest oxidative stress was noted in fish from the less TBT-polluted area, where DBT and bile PAHs occurred. These findings showed different impact levels due to or increased by the chronic exposure of biota to BTs. PMID:24217970

  16. Bathyal demersal fishes of the Charlie-Gibbs Fracture Zone region (49°-54°N) of the Mid-Atlantic Ridge: III. Results from remotely operated vehicle (ROV) video transects

    NASA Astrophysics Data System (ADS)

    Linley, Thomas D.; Alt, Claudia H. S.; Jones, Daniel O. B.; Priede, Imants G.

    2013-12-01

    Demersal fish were assessed by remotely operated vehicle (ROV) video transects at sites to the NE, NW (54°N), SE and SW (49°N) of the Charlie-Gibbs Fracture Zone (CGFZ) at ca. 2500 m depth on the Mid-Atlantic Ridge. At each site, three different slope categories (flat, 10° slope and >30° slope) were sampled with four transects, each surveying 2000 m3 of suprabenthic water. This resulted in 12 high-definition video transects at every site, covering a total of 24,000 m3 suprabenthic water. Six species were observed; which was fewer than in surveys using baited landers (19 species) and trawls (26 species) in the same area. Bathysaurus ferox, Halosauropsis macrochir, Antimora rostrata and Polyacanthonotus challengeri did not vary in density between sites, while Coryphaenoides brevibarbis and Coryphaenoides armatus were significantly more abundant at the northern sites; the latter supporting findings using baited landers. The halosaur H. macrochir was the only species affected by slope. The majority of observed fish showed no reaction to one or more of the stimuli produced by the ROV, however burst swimming was observed at least once in all species except B. ferox. The most abundant species, C. brevibarbis, was particularly affected by the presence of the ROV.

  17. Correlations between benthic habitats and demersal fish assemblages — A case study on the Dogger Bank (North Sea)

    NASA Astrophysics Data System (ADS)

    Sell, Anne F.; Kröncke, Ingrid

    2013-07-01

    The interdependence between groundfish assemblages and habitat properties was investigated on the Dogger Bank in the North Sea. Abiotic habitat parameters considered included topography, hydrographic conditions, sediment composition, and the biotic habitat variable the prevailing benthic invertebrates. Distinct epi- and infauna communities occurred at different locations on the Dogger Bank. Fish assemblages were clearly linked to both the biotic and abiotic habitat characteristics. Overall, fish and benthic communities revealed similar spatial distribution, represented in the respective clusters of characteristic and abundant species. Distribution patterns corresponded with the prevailing abiotic conditions such as depth and sediment composition, which appear to relate to autecological preferences of individual species. The apparently most generalist species, grey gurnard (Eutrigla gurnardus) and dab (Limanda limanda) occurred at all stations and dominated in terms of biomass in most cases. The absolute numbers of grey gurnards were related to the abundance of suitable prey, invertebrate and fish species, which stomach analyses revealed as part of the diet in an independent study during the same research cruise. Haddock (Melanogrammus aeglefinus) and whiting (Merlangius merlangus) were only abundant at deep stations along the flanks of the bank. The occurrence of lemon sole (Microstomus kitt), American plaice (Hippoglossoides platessoides) and cod (Gadus morhua) was also positively correlated with depth, whereas especially lesser weever (Echiichthys vipera), sandeel species and solenette (Buglossidium luteum) occurred predominantly at the shallower sites. At the same time, individual fish species such as solenette and lesser weever were associated with high densities of selected epi- or infauna species.

  18. Underappreciated species in ecology: "ugly fish" in the northwest Atlantic Ocean.

    PubMed

    Link, Jason S

    2007-10-01

    Species shifts and replacements are common in ecological studies. Observations thereof serve as the impetus for many ecological endeavors. Many of the species now known to dominate ecosystem functioning were largely ignored until studies of those underappreciated species elucidated their critical roles. Recognizing the potential importance of underappreciated species has implications for functional redundancies in ecosystems and should alter our approach to long-term monitoring. One example of an applied ecological system containing species shifts, underappreciated species, and potential changes in functional redundancies is the topic of fisheries. The demersal component of many fish communities usually consists of high-profile and commercially valuable species that are targets of fisheries, plus a diverse group of lesser known species that have minimal commercial value and focus. Yet ecologically these traditionally nontargeted species are often a major biomass sink in marine ecosystems and can also be critical in the functioning of bentho-demersal food webs. I examined the biomass trajectories of several species of skates, cottids, lophiids, anarhichadids, zooarcids, and similar species in the northeast U.S. Atlantic ecosystem to determine whether their relative abundance has changed across the past four decades. Distribution and stomach contents of these species were also evaluated over time to further elucidate the relative importance of these species. Landings of these underappreciated bentho-demersal fish were also examined in comparison to those species that historically have been commercially targeted. Of particular emphasis was the evaluation of evidence for sequential stock depletion and the ramifications for functional redundancy for this ecosystem. Results indicate that some of these fish species are now the dominant piscivores, benthivores, and scavengers in this ecosystem. These formerly under-studied species generally have either maintained a

  19. Comparison of hatching mode in pelagic and demersal eggs of two closely related species in the order pleuronectiformes.

    PubMed

    Kawaguchi, Mari; Sano, Kaori; Yoshizaki, Norio; Shimizu, Daisuke; Fujinami, Yuichiro; Noda, Tsutomu; Yasumasu, Shigeki

    2014-11-01

    We compared several characteristics of the pelagic eggs of Verasper variegatus with those of demersal eggs of Pseudopleuronectes yokohamae, both in the order Pleuronectiformes (halibuts or flatfishes). V. variegatus eggs had about twice the diameter of P. yokohamae eggs. However, the total egg protein weight of P. yokohamae was similar to that of V. variegatus. The specific gravity of P. yokohamae eggs was calculated to be 7-fold that of V. variegatus. The difference in size is the main feature distinguishing the two types of egg. The thickness of the egg envelope of P. yokohamae- more than twice that of V. variegatus-must affect the manner of hatching. The amount of hatching enzyme synthesized in pre-hatching embryo was estimated to be larger in P. yokohamae than V. variegatus. The distribution of hatching gland cells differed between the species. In V. variegates embryos, these were located on the yolk sac as a narrow ring-shaped belt, resulting in cleavage of the egg envelope into two parts by digesting a limited region of the egg envelope, called "rim-hatching". The hatching gland cells of P. yokohamae embryos were distributed all over the surface of the yolk sac, forming a hole through which the embryo could escape. Thus, the location of the hatching gland cells in pre-hatching embryos varied during the evolution of the Pleuronectiformes, depending on the egg type and manner of hatching. PMID:25366152

  20. Diversity and Composition of Demersal Fishes along a Depth Gradient Assessed by Baited Remote Underwater Stereo-Video

    PubMed Central

    Zintzen, Vincent; Anderson, Marti J.; Roberts, Clive D.; Harvey, Euan S.; Stewart, Andrew L.; Struthers, Carl D.

    2012-01-01

    Background Continental slopes are among the steepest environmental gradients on earth. However, they still lack finer quantification and characterisation of their faunal diversity patterns for many parts of the world. Methodology/Principal Findings Changes in fish community structure and diversity along a depth gradient from 50 to 1200 m were studied from replicated stereo baited remote underwater video deployments within each of seven depth zones at three locations in north-eastern New Zealand. Strong, but gradual turnover in the identities of species and community structure was observed with increasing depth. Species richness peaked in shallow depths, followed by a decrease beyond 100 m to a stable average value from 700 to 1200 m. Evenness increased to 700 m depth, followed by a decrease to 1200 m. Average taxonomic distinctness △+ response was unimodal with a peak at 300 m. The variation in taxonomic distinctness Λ+ first decreased sharply from 50 to 300 m, then increased beyond 500 m depth, indicating that species from deep samples belonged to more distant taxonomic groups than those from shallow samples. Fishes with northern distributions progressively decreased in their proportional representation with depth whereas those with widespread distributions increased. Conclusions/Significance This study provides the first characterization of diversity patterns for bait-attracted fish species on continental slopes in New Zealand and is an imperative primary step towards development of explanatory and predictive ecological models, as well as being fundamental for the implementation of efficient management and conservation strategies for fishery resources. PMID:23119045

  1. Potential Health Hazard Assessment in Terms of Some Heavy Metals Determined in Demersal Fishes Caught in Eastern Aegean Sea.

    PubMed

    Yabanli, Murat; Alparslan, Yunus

    2015-10-01

    A heavy metal risk assessment based on estimated daily intake (EDI) and target hazard quotient was made for children and adults. Five fish species captured from the eastern Aegean Sea were analyzed for Cr, Cu, Cd, Hg and Pb by inductively coupled plasma spectroscopy in muscle tissue of red mullet (Mullus barbatus), surmullet (Mullus surmuletus), sand steenbras (Lithognathus mormyrus), common two-banded seabream (Diplodus vulgaris) and common pandora (Pagellus erythinus). The ranges for mean metal concentration (mg/kg wet wt) in the five species were 0.27-0.39 Cr, 0.12-0.22 Cu, 0.09-0.10 Hg and 0.10-0.12 Pb. All means were identical for Cd at 0.03 mg/kg wet wt. The EDI values for each metal were ascertained not to exceed the tolerable daily intake amount. Fish did not contain sufficiently high levels of these metals to pose a carcinogenic risk. PMID:26109309

  2. Multi Year Observations Reveal Variability in Residence of a Tropical Demersal Fish, Lethrinus nebulosus: Implications for Spatial Management

    PubMed Central

    Pillans, Richard D.; Bearham, Douglas; Boomer, Andrew; Downie, Ryan; Patterson, Toby A.; Thomson, Damian P.; Babcock, Russel C.

    2014-01-01

    Off the Ningaloo coast of North West Western Australia, Spangled Emperor Lethrinus nebulosus are among the most highly targeted recreational fish species. The Ningaloo Reef Marine Park comprises an area of 4,566 km2 of which 34% is protected from fishing by 18 no-take sanctuary zones ranging in size from 0.08–44.8 km2. To better understand Spangled Emperor movements and the adequacy of sanctuary zones within the Ningaloo Reef Marine Park for this species, 84 Spangled Emperor of a broad spectrum of maturity and sex were tagged using internal acoustic tags in a range of lagoon and reef slope habitats both inside and adjacent to the Mangrove Bay Sanctuary zone. Kernel Utilisation Distribution (KUD) was calculated for 39 resident individuals that were detected for more than 30 days. There was no relationship with fish size and movement or site fidelity. Average home range (95% KUD) for residents was 8.5±0.5 km2 compared to average sanctuary zone size of 30 km2. Calculated home range was stable over time resulting in resident animals tagged inside the sanctuary zone spending ∼80% of time within the sanctuary boundaries. The number of fish remaining within the array of receivers declined steadily over time and after one year more than 60% of tagged fish had moved outside the sanctuary zone and also beyond the 28 km2 array of receivers. Long term monitoring identified the importance of shifting home range and was essential for understanding overall residency within protected areas and also for identifying spawning related movements. This study indicates that despite exhibiting stable and small home ranges over periods of one to two years, more than half the population of spangled emperor move at scales greater than average sanctuary size within the Ningaloo Reef Marine Park. PMID:25181537

  3. Feeding ecology of some fish species occurring in artisanal fishery of Socotra Island (Yemen).

    PubMed

    Hassan Ali', Mohammed Kaed; Belluscio, Andrea; Ventura, Daniele; Ardizzone, Giandomenico

    2016-04-30

    The demersal species Lethrinus borbonicus, Lethrinus mahsena, Lethrinus microdon, Lethrinus nebulosus, Lutjanus bohar, Lutjanus gibbus, Lutjanus kasmira, Epinephelus fasciatus, Epinephelus stoliczkae, Carangoides gymnostethus and Euthynnus affinis are important coastal fishes species of the northern coast of Socotra (Yemen), exploited by local fishery. The biology and feeding ecology of these species are poorly known in the area. A total of 1239 specimens were sampled from the main fishing landing site of the island (Hadibo). Total length and weight were measured, stomach contents were analyzed, diet overlap, Fulton's Condition index, and trophic levels were estimated. C. gymnostethus, L. microdon and L. kasmira occupied the highest position (T=4.50), L. nebulosus occupied the lower one (TL=3.41). The role of the increasing abundance of small pelagic fish in the diet of many species after the upwelling event is evident, but also different feeding strategies are reported, according to fish ecology. PMID:26880127

  4. Distribution, population biology, and trophic ecology of the deepwater demersal fish Halosauropsis macrochir (Pisces: Halosauridae) on the mid-Atlantic Ridge.

    PubMed

    Bergstad, Odd Aksel; Clark, Laura; Hansen, Hege Øverbø; Cousins, Nicola

    2012-01-01

    Halosauropsis macrochir ranked amongst the most abundant and widespread demersal fishes on the mid-Atlantic Ridge of the North Atlantic (Iceland-Azores) with greatest abundance at 1700-3500 m. All sizes, ranging from 10-76 cm total length, occurred in the area without any apparent spatial pattern or depth trend. Using otolith sections displaying growth increments assumed to represent annuli, the age range recorded was 2-36 years, but most individuals were <20 years. Length and weight at age data were used to fit growth models. No differences between sexes in length and weight at age were observed. The majority of samples had a surplus of males. Diet analysis showed that H. macrochir feeds on Crustacea, Teleostei, Polychaeta, and Cephalopoda, but few prey could be identified to lower taxonomical levels. The mid-Atlantic Ridge constitutes a major portion of the North Atlantic living space of the abyssal halosaur where it completes its full life cycle, primarily as an actively foraging euryophagous micronekton/epibenthos and infauna feeder, becoming a partial piscivore with increasing size. PMID:22384030

  5. Distribution, Population Biology, and Trophic Ecology of the Deepwater Demersal Fish Halosauropsis macrochir (Pisces: Halosauridae) on the Mid-Atlantic Ridge

    PubMed Central

    Bergstad, Odd Aksel; Clark, Laura; Hansen, Hege Øverbø; Cousins, Nicola

    2012-01-01

    Halosauropsis macrochir ranked amongst the most abundant and widespread demersal fishes on the mid-Atlantic Ridge of the North Atlantic (Iceland-Azores) with greatest abundance at 1700–3500 m. All sizes, ranging from 10–76 cm total length, occurred in the area without any apparent spatial pattern or depth trend. Using otolith sections displaying growth increments assumed to represent annuli, the age range recorded was 2–36 years, but most individuals were <20 years. Length and weight at age data were used to fit growth models. No differences between sexes in length and weight at age were observed. The majority of samples had a surplus of males. Diet analysis showed that H. macrochir feeds on Crustacea, Teleostei, Polychaeta, and Cephalopoda, but few prey could be identified to lower taxonomical levels. The mid-Atlantic Ridge constitutes a major portion of the North Atlantic living space of the abyssal halosaur where it completes its full life cycle, primarily as an actively foraging euryophagous micronekton/epibenthos and infauna feeder, becoming a partial piscivore with increasing size. PMID:22384030

  6. Decrease of Zn, Cd and Pb concentrations in marine fish species over a decade as response to reduction of anthropogenic inputs: the example of Tagus estuary.

    PubMed

    Raimundo, Joana; Pereira, Patrícia; Caetano, Miguel; Cabrita, Maria Teresa; Vale, Carlos

    2011-12-01

    Concentrations of Zn, Cd and Pb were measured in muscle of pelagic, demersal and benthic fishes, captured in the coastal area adjoining the Tagus estuary (Portugal), in 1998 and 2010. Additionally, Pb and Cd were determined in estuarine waters, showing a pronounced decrease between 1999 and 2010. Accordingly, specimens captured in 2010 presented significantly lower metal concentrations than individuals caught in 1998. Reductions were more evident for Pb (reduction of 59-99%) than for Cd (14-93%) and Zn (17-54%). Values in pelagic and demersal species exhibited higher reductions than in benthic species. Decrease of metal concentrations in fish appears thus to reflect the improvement of estuarine water quality as anthropogenic sources have been reduced or eliminated. Furthermore, it emphasises the usefulness of the descriptor "Contaminants in Fish" to assess the efficiency of measures to achieve a good environmental status, in the scope of the Marine Strategy Framework Directive. PMID:21986541

  7. Acoustical Detection of High-Density Krill Demersal Layers in the Submarine Canyons off Georges Bank.

    PubMed

    Greene, C H; Wiebe, P H; Burczynski, J; Youngbluth, M J

    1988-07-15

    High-density demersal layers of krill have been detected in the submarine canyons off Georges Bank by means of a high-frequency, dual-beam bioacoustical technique. Krill densities in these demersal layers were observed to be two to three orders of magnitude greater than the highest densities observed in water-column scattering layers. Such abundances may help explain the unusually high squid and demersal fish production estimates attributed to the Georges Bank ecosystem. PMID:17734865

  8. [Bycatch fish species from shrimp industrial fishery in the Gulf of California, Mexico].

    PubMed

    López-Martínez, Juana; Herrera-Valdivia, Eloisa; Rodríguez-Romero, Jesús; Hernández-Vázquez, Sergio

    2010-09-01

    Bycatch fish species from shrimp industrial fishery in the Gulf of California, Mexico. The shrimp fishery in the Gulf of California is one the most important activities of revenue and employment for communities. Nevertheless, this fishery has also created a large bycatch problem, principally fish. To asses this issue, a group of observers were placed on board the industrial shrimp fleet and evaluated the Eastern side of the Gulf during 2004 and 2005. Studies consisted on 20kg samples of the capture for each trawl, and made possible a systematic list of species for this geographic area. Fish represented 70% of the capture. A total of 51 101 fish were collected, belonging to two classes, 20 orders, 65 families, 127 genera, and 241 species. The order Perciformes was the most diverse with 31 families, 78 genera, and 158 species. The best represented families by number of species were: Sciaenidae (34) and Paralichthyidae (18) and Haemulidae and Carangidae (16 each). The best represented genera in number of species were Symphurus (nine) and Diplectrum and Cynoscion (six); other important genera were Larimus and Porichthys with five species each. The best represented species in number were Syacium ovale, Pseudupeneus grandisquamis, Haemulopsis nitidos, Diplectrum pacificum, Synodus scituliceps, Balistes polylepis, Eucinostomus currani, Eucinostomus gracilis, Porichthys analis, Chloroscombrus orqueta, Selene peruviana, Orthopristis reddingi, Etropus crossotus, Scorpaena sonorae and Urobatis halleri. The number of recorded species is notably high, compared with demersal fauna of other areas of the Mexican Pacific, such as Gulf of Tehuantepec (178), Nayarit, Michoacán, Guerrero (174, 120 and 166), Jalisco and Colima (161 species), and those of the Western coast of the Baja California Peninsula (220 species). PMID:20737847

  9. The deepwater demersal ichthyofauna of the western Coral Sea.

    PubMed

    Last, Peter R; Pogonoski, John J; Gledhill, Daniel C; White, William T; Walker, Chris J

    2014-01-01

    The highly diverse deepwater demersal ichthyofauna of the western Coral Sea was first systematically surveyed in two exploratory voyages in 1985 and 1986, and these fish assemblages have not been investigated at the same level since. Only recently have catch data and specimens, obtained from these first voyages almost 3 decades ago, been rigorously investigated and analysed. Some 393 species of fishes from 125 families were collected during the 1985 voyage which surveyed the northeastern Australian continental margin, and the Saumarez and Queensland Plateaus. A checklist of the species caught is provided. Levels of endemicity of deepwater fishes in the western Coral Sea are very high with about 50% of well-studied groups, such as sharks and rays, confined to this relatively small geographic region. A very high proportion of species caught during this voyage were either undescribed (78 species or 20%) or new Australian records (96 species or 24%) at the time of the survey. Another 68 species (17%) are the subject of further taxonomic investigation or are currently undergoing formal description. The fauna exhibits some intraregional differences in structure. Biogeographically informative fishes such as skates appear to be cryptically partitioned within the region, differing in composition to other Australian regions and those of French territories to the east. Strong depth-related partitioning of the fauna is also evident, and its structure follows zonation patterns observed across the wider Australian region. Given the high level of micro-endemicity and regional uniqueness of the fauna, there is a compelling argument for the existence of a faunal gyre in the Coral Sea.  New gap-filling surveys are needed to better define the structure of this fauna and determine its distribution. PMID:25543931

  10. Using multiple gears to assess acoustic detectability and biomass of fish species in lake superior

    USGS Publications Warehouse

    Yule, D.L.; Adams, J.V.; Stockwell, J.D.; Gorman, O.T.

    2007-01-01

    Recent predator demand and prey supply studies suggest that an annual daytime bottom trawl survey of Lake Superior underestimates prey fish biomass. A multiple-gear (acoustics, bottom trawl, and midwater trawl) nighttime survey has been recommended, but before abandoning a long-term daytime survey the effectiveness of night sampling of important prey species must be verified. We sampled three bottom depths (30, 60, and 120 m) at a Lake Superior site where the fish community included all commercially and ecologically important species. Day and night samples were collected within 48 h at all depths during eight different periods (one new and one full moon period during both early summer and late summer to early fall over 2 years). Biomass of demersal and benthic species was higher in night bottom trawl samples than in day bottom trawl samples. Night acoustic collections showed that pelagic fish typically occupied water cooler than 15°C and light levels less than 0.001 lx. Using biomass in night bottom trawls and acoustic biomass above the bottom trawl path, we calculated an index of acoustic detectability for each species. Ciscoes Coregonus artedi, kiyis C. kiyi, and rainbow smeltOsmerus mordax left the bottom at night, whereas bloaters C. hoyi stayed nearer the bottom. We compared the biomass of important prey species estimated with two survey types: day bottom trawls and night estimates of the entire water column (bottom trawl biomass plus acoustic biomass). The biomass of large ciscoes (>200 mm) was significantly greater when measured at night than when measured during daylight, but the differences for other sizes of important species did not vary significantly by survey type. Nighttime of late summer is a period when conditions for biomass estimation are largely invariant, and all important prey species can be sampled using a multiple-gear approach.

  11. Spatial analysis of the trophic interactions between two juvenile fish species and their preys along a coastal-estuarine gradient

    NASA Astrophysics Data System (ADS)

    Kopp, Dorothée; Le Bris, Hervé; Grimaud, Lucille; Nérot, Caroline; Brind'Amour, Anik

    2013-08-01

    Coastal and estuarine systems provide nursery grounds for many marine fish species. Their productivity has been correlated with terrigeneous inputs entering the coastal-estuarine benthic food web, thereby favouring the establishment of fish juveniles. Studies in these ecosystems often describe the nursery as a single large habitat without verifying nor considering the presence of contiguous habitats. Our study aimed at identifying different habitats based on macrozoobenthic communities and morpho-sedimentary characteristics and assessing the trophic interactions between fish juveniles and their benthic preys within these habitats. It included 43 sampling sites covering 5 habitats in which we described taxonomically and quantitatively the invertebrates and fish communities with stable isotopes and gut contents. It suggested that the benthic common sole Solea solea displayed feeding plasticity at the population level, separating the juveniles (G0) from the older fish (G1) into different "feeding sub-populations". Size-based feeding plasticity was also observable in the spatial occupancy of that species in the studied bay. The demersal pouting, Trisopterus luscus, equally used the different habitats but displayed low feeding plasticity across and inside each habitat. Stable isotopes proved to be powerful tools to study the spatial distribution of trophic interactions in complex ecosystems like the bay of Vilaine and to define optimal habitats for fish that use the coastal-estuarine ecosystem as nursery grounds.

  12. NATIVE FRESHWATER FISH AND MUSSEL SPECIES RICHNESS

    EPA Science Inventory

    These data represent predicted current distributions of all native freshwater fish and freshwater mussels in the Middle-Atlantic region. The data are available for both 8-digit HUCs and EMAP hexagons and represent total species counts for each spatial unit.

  13. SMART: A Spatially Explicit Bio-Economic Model for Assessing and Managing Demersal Fisheries, with an Application to Italian Trawlers in the Strait of Sicily

    PubMed Central

    Russo, Tommaso; Parisi, Antonio; Garofalo, Germana; Gristina, Michele; Cataudella, Stefano; Fiorentino, Fabio

    2014-01-01

    Management of catches, effort and exploitation pattern are considered the most effective measures to control fishing mortality and ultimately ensure productivity and sustainability of fisheries. Despite the growing concerns about the spatial dimension of fisheries, the distribution of resources and fishing effort in space is seldom considered in assessment and management processes. Here we propose SMART (Spatial MAnagement of demersal Resources for Trawl fisheries), a tool for assessing bio-economic feedback in different management scenarios. SMART combines information from different tasks gathered within the European Data Collection Framework on fisheries and is composed of: 1) spatial models of fishing effort, environmental characteristics and distribution of demersal resources; 2) an Artificial Neural Network which captures the relationships among these aspects in a spatially explicit way and uses them to predict resources abundances; 3) a deterministic module which analyzes the size structure of catches and the associated revenues, according to different spatially-based management scenarios. SMART is applied to demersal fishery in the Strait of Sicily, one of the most productive fisheries of the Mediterranean Sea. Three of the main target species are used as proxies for the whole range exploited by trawlers. After training, SMART is used to evaluate different management scenarios, including spatial closures, using a simulation approach that mimics the recent exploitation patterns. Results evidence good model performance, with a noteworthy coherence and reliability of outputs for the different components. Among others, the main finding is that a partial improvement in resource conditions can be achieved by means of nursery closures, even if the overall fishing effort in the area remains stable. Accordingly, a series of strategically designed areas of trawling closures could significantly improve the resource conditions of demersal fisheries in the Strait of

  14. Exposure to hydrocarbons 10 years after the Exxon Valdez oil spill: evidence from cytochrome P4501A expression and biliary FACs in nearshore demersal fishes.

    PubMed

    Jewett, Stephen C; Dean, Thomas A; Woodin, Bruce R; Hoberg, Max K; Stegeman, John J

    2002-01-01

    Three biomarkers of hydrocarbon exposure, CYP1A in liver vascular endothelium, liver ethoxyresorufin O-deethylase (EROD), and biliary fluorescent aromatic compounds (FACs), were examined in the nearshore fishes, masked greenling (Hexagrammos octogrammus) and crescent gunnel (Pholis laeta), collected in Prince William Sound, Alaska, 7-10 years after the Exxon Valdez oil spill (EVOS). All biomarkers were elevated in fish collected from sites originally oiled, in comparison to fish from unoiled sites. In 1998, endothelial CYP1A in masked greenling from sites that were heavily oiled in 1989 was significantly higher than in fish collected outside the spill trajectory. In 1999, fishes collected from sites adjacent to intertidal mussel beds containing lingering Exxon Valdez oil had elevated endothelial CYP1A and EROD, and high concentrations of biliary FACs. Fishes from sites near unoiled mussel beds, but within the original spill trajectory, also showed evidence of hydrocarbon exposure, although there were no correlations between sediment petroleum hydrocarbon and any of the biomarkers. Our data show that 10 years after the spill, nearshore fishes within the original spill zone were still exposed to residual EVOS hydrocarbons. PMID:12148943

  15. ABC transporters in fish species: a review

    PubMed Central

    Ferreira, Marta; Costa, Joana; Reis-Henriques, Maria A.

    2014-01-01

    ATP-binding cassette (ABC) proteins were first recognized for their role in multidrug resistance (MDR) in chemotherapeutic treatments, which is a major impediment for the successful treatment of many forms of malignant tumors in humans. These proteins, highly conserved throughout vertebrate species, were later related to cellular detoxification and accounted as responsible for protecting aquatic organisms from xenobiotic insults in the so-called multixenobiotic resistance mechanism (MXR). In recent years, research on these proteins in aquatic species has highlighted their importance in the detoxification mechanisms in fish thus it is necessary to continue these studies. Several transporters have been pointed out as relevant in the ecotoxicological context associated to the transport of xenobiotics, such as P-glycoproteins (Pgps), multidrug-resistance-associated proteins (MRPs 1-5) and breast cancer resistance associated protein (BCRP). In mammals, several nuclear receptors have been identified as mediators of phase I and II metabolizing enzymes and ABC transporters. In aquatic species, knowledge on co-regulation of the detoxification mechanism is scarce and needs to be addressed. The interaction of emergent contaminants that can act as chemosensitizers, with ABC transporters in aquatic organisms can compromise detoxification processes and have population effects and should be studied in more detail. This review intends to summarize the recent advances in research on MXR mechanisms in fish species, focusing in (1) regulation and functioning of ABC proteins; (2) cooperation with phase I and II biotransformation enzymes; and (3) ecotoxicological relevance and information on emergent pollutants with ability to modulate ABC transporters expression and activity. Several lines of evidence are clearly suggesting the important role of these transporters in detoxification mechanisms and must be further investigated in fish to underlay the mechanism to consider their use as

  16. Fish Ecology and Evolution in the World's Oxygen Minimum Zones and Implications of Ocean Deoxygenation.

    PubMed

    Gallo, N D; Levin, L A

    2016-01-01

    Oxygen minimum zones (OMZs) and oxygen limited zones (OLZs) are important oceanographic features in the Pacific, Atlantic, and Indian Ocean, and are characterized by hypoxic conditions that are physiologically challenging for demersal fish. Thickness, depth of the upper boundary, minimum oxygen levels, local temperatures, and diurnal, seasonal, and interannual oxycline variability differ regionally, with the thickest and shallowest OMZs occurring in the subtropics and tropics. Although most fish are not hypoxia-tolerant, at least 77 demersal fish species from 16 orders have evolved physiological, behavioural, and morphological adaptations that allow them to live under the severely hypoxic, hypercapnic, and at times sulphidic conditions found in OMZs. Tolerance to OMZ conditions has evolved multiple times in multiple groups with no single fish family or genus exploiting all OMZs globally. Severely hypoxic conditions in OMZs lead to decreased demersal fish diversity, but fish density trends are variable and dependent on region-specific thresholds. Some OMZ-adapted fish species are more hypoxia-tolerant than most megafaunal invertebrates and are present even when most invertebrates are excluded. Expansions and contractions of OMZs in the past have affected fish evolution and diversity. Current patterns of ocean warming are leading to ocean deoxygenation, causing the expansion and shoaling of OMZs, which is expected to decrease demersal fish diversity and alter trophic pathways on affected margins. Habitat compression is expected for hypoxia-intolerant species, causing increased susceptibility to overfishing for fisheries species. Demersal fisheries are likely to be negatively impacted overall by the expansion of OMZs in a warming world. PMID:27573051

  17. Phylogeny of Fish-Infecting Calyptospora species (Apicomplexa: Eimeriorina)

    EPA Science Inventory

    There are numerous species of apicomplexans that infect poikilothermic vertebrates such as fishes, and possess unique morphological features that provide insight into the evolution of this important phylum of parasites. Here the relationship of the fish-infecting Calyptospora spe...

  18. DNA barcode-based molecular identification system for fish species.

    PubMed

    Kim, Sungmin; Eo, Hae-Seok; Koo, Hyeyoung; Choi, Jun-Kil; Kim, Won

    2010-12-01

    In this study, we applied DNA barcoding to identify species using short DNA sequence analysis. We examined the utility of DNA barcoding by identifying 53 Korean freshwater fish species, 233 other freshwater fish species, and 1339 saltwater fish species. We successfully developed a web-based molecular identification system for fish (MISF) using a profile hidden Markov model. MISF facilitates efficient and reliable species identification, overcoming the limitations of conventional taxonomic approaches. MISF is freely accessible at http://bioinfosys.snu.ac.kr:8080/MISF/misf.jsp . PMID:21110132

  19. Retrospective analysis: bile hydrocarbons and histopathology of demersal rockfish in Prince William Sound, Alaska, after the Exxon Valdez oil spill.

    PubMed

    Marty, Gary D; Hoffmann, Andy; Okihiro, Mark S; Hepler, Kelly; Hanes, David

    2003-12-01

    Demersal rockfish are the only fish species that have been found dead in significant numbers after major oil spills, but the link between oil exposure and effect has not been well established. After the 1989 Exxon Valdez oil spill in Prince William Sound, Alaska, several species of rockfish (Sebastes spp.) from oiled and reference sites were analyzed for hydrocarbon metabolites in bile (1989-1991) and for microscopic lesions (1990 and 1991). Biliary hydrocarbons consistent with exposure to Exxon Valdez oil were elevated in 1989, but not in 1990 or 1991. Significant microscopic findings included pigmented macrophage aggregates and hepatic megalocytosis, fibrosis, and lipid accumulation. Site differences in microscopic findings were significant with respect to previous oil exposure in 1991 (P=0.038), but not in 1990. However, differences in microscopic findings were highly significant with respect to age and species in both years (P<0.001). We conclude that demersal rockfish were exposed to Exxon Valdez oil in 1989, but differences in microscopic changes in 1990 and 1991 were related more to age and species differences than to previous oil exposure. PMID:12927739

  20. 50 CFR Table 2c to Part 679 - Species Codes: FMP Forage Fish Species (all species of the following families)

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 50 Wildlife and Fisheries 11 2011-10-01 2011-10-01 false Species Codes: FMP Forage Fish Species (all species of the following families) 2c Table 2c to Part 679 Wildlife and Fisheries FISHERY...: FMP Forage Fish Species (all species of the following families) Species Description Code...

  1. 50 CFR Table 2c to Part 679 - Species Codes: FMP Forage Fish Species (all species of the following families)

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... 50 Wildlife and Fisheries 9 2010-10-01 2010-10-01 false Species Codes: FMP Forage Fish Species (all species of the following families) 2c Table 2c to Part 679 Wildlife and Fisheries FISHERY...: FMP Forage Fish Species (all species of the following families) Species Description Code...

  2. Tissue specific metal characterization of selected fish species in Pakistan.

    PubMed

    Ahmed, Mukhtiar; Ahmad, Taufiq; Liaquat, Muhammad; Abbasi, Kashif Sarfraz; Farid, Ibrahim Bayoumi Abdel; Jahangir, Muhammad

    2016-04-01

    Concentration of various metals, i.e., zinc (Zn), copper (Cu), lead (Pb), nickel (Ni), iron (Fe), manganese (Mn), chromium (Cr), and silver (Ag), was evaluated in five indigenous fish species (namely, silver carp, common carp, mahseer, thela fish, and rainbow trout), by using atomic absorption spectrophotometer. It is proved from this study that, overall, mahseer and rainbow trout had high amount of zinc, whereas thela fish and silver carp had high concentration of copper, chromium, silver, nickel, and lead, while common carp had highest amount of iron contents. Furthermore, a tissue-specific discrimination among various fish species was observed, where higher metal concentrations were noticed in fish liver, with decreasing concentration in other organs like skin, gills, and finally the least contents in fish muscle. Multivariate data analysis showed not only a variation in heavy metals among the tissues but also discrimination among the selected fish species. PMID:26951449

  3. SURROGATE SPECIES IN ASSESSING CONTAMINANT RISK FOR ENDANGERED FISHES

    EPA Science Inventory

    Rainbow trout, fathead minnows, and sheepshead minnows were tested as surrogate species to assess contaminant risk for 17 endangered fishes and one toad species. Acute toxicity tests were conducted with carbaryl, copper, 4-nonylphenol, pentachlorophenol, and permethrin in accord...

  4. Feeding ecology of two demersal opportunistic predators coexisting in the northwestern Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    López, Nieves; Navarro, Joan; Barría, Claudio; Albo-Puigserver, Marta; Coll, Marta; Palomera, Isabel

    2016-06-01

    The study of the feeding ecology of marine organisms is crucial to understanding their ecological roles and advancing our knowledge of marine ecosystem functioning. The aim of this study was to analyse the trophic ecology of two demersal predator species, black anglerfish (Lophius budegassa) and white anglerfish (L. piscatorius), in the northwestern Mediterranean Sea. Both species are important in the study area due to their high abundance and economic value, but information about their feeding behaviour is scarce. Here, we described the diet composition and ecological role of these two species, investigating whether trophic segregation exists between them and amongst fish of different sizes. In addition, by using experimental survey data we described the spatial distribution of both species to help us interpret trophic behaviour patterns. We gathered samples of two different sizes (small individuals of a total length <30 cm and large individuals ≥30 cm) of both species and combined stomach content analyses (SCA) and stable isotope analyses (SIA) of nitrogen and carbon with isotopic mixing models. Our results revealed that both anglerfish species are opportunistic predators, showing a diet composed mainly of fishes and, to a lesser extent, of crustaceans, with a small proportion of cephalopods, gastropods, bivalves and echinoderms. We found trophic segregation between the two species and the two sizes, indicating that they feed on different prey, in line with differences in their spatial distribution within the study area. This partial partition of food resources could also be explained by the differences in rhythms of activity that were reported in previous studies. In addition, although both species occupied a high position within the food web, our results showed that white anglerfish individuals and the large-sized fish of both species held higher trophic positions. This study demonstrates the usefulness of complementary approaches for trophic studies and

  5. Feeding ecology of two demersal opportunistic predators coexisting in the northwestern Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    López, Nieves; Navarro, Joan; Barría, Claudio; Albo-Puigserver, Marta; Coll, Marta; Palomera, Isabel

    2016-06-01

    The study of the feeding ecology of marine organisms is crucial to understanding their ecological roles and advancing our knowledge of marine ecosystem functioning. The aim of this study was to analyse the trophic ecology of two demersal predator species, black anglerfish (Lophius budegassa) and white anglerfish (L. piscatorius), in the northwestern Mediterranean Sea. Both species are important in the study area due to their high abundance and economic value, but information about their feeding behaviour is scarce. Here, we described the diet composition and ecological role of these two species, investigating whether trophic segregation exists between them and amongst fish of different sizes. In addition, by using experimental survey data we described the spatial distribution of both species to help us interpret trophic behaviour patterns. We gathered samples of two different sizes (small individuals of a total length <30 cm and large individuals ≥30 cm) of both species and combined stomach content analyses (SCA) and stable isotope analyses (SIA) of nitrogen and carbon with isotopic mixing models. Our results revealed that both anglerfish species are opportunistic predators, showing a diet composed mainly of fishes and, to a lesser extent, of crustaceans, with a small proportion of cephalopods, gastropods, bivalves and echinoderms. We found trophic segregation between the two species and the two sizes, indicating that they feed on different prey, in line with differences in their spatial distribution within the study area. This partial partition of food resources could also be explained by the differences in rhythms of activity that were reported in previous studies. In addition, although both species occupied a high position within the food web, our results showed that white anglerfish individuals and the large-sized fish of both species held higher trophic positions. This study demonstrates the usefulness of complementary approaches for trophic studies and

  6. A phylogenetic analysis of egg size, clutch size, spawning mode, adult body size, and latitude in reef fishes

    NASA Astrophysics Data System (ADS)

    Kasimatis, Katja; Riginos, Cynthia

    2016-06-01

    Theoretical treatments of egg size in fishes suggest that constraints on reproductive output should create trade-offs between the size and number of eggs produced per spawn. For marine reef fishes, the observation of distinct reproductive care strategies (demersal guarding, egg scattering, and pelagic spawning) has additionally prompted speculation that these strategies reflect alternative fitness optima with selection on egg size differing by reproductive mode and perhaps latitude. Here, we aggregate data from 278 reef fish species and test whether clutch size, reproductive care, adult body size, and latitudinal bands (i.e., tropical, subtropical, and temperate) predict egg size, using a statistically unified framework that accounts for phylogenetic correlations among traits. We find no inverse relationship between species egg size and clutch size, but rather that egg size differs by reproductive mode (mean volume for demersal eggs = 1.22 mm3, scattered eggs = 0.18 mm3, pelagic eggs = 0.52 mm3) and that clutch size is strongly correlated with adult body size. Larger eggs were found in temperate species compared with tropical species in both demersal guarders and pelagic spawners, but this difference was not strong when accounting for phylogenetic correlations, suggesting that differences in species composition underlies regional differences in egg size. In summary, demersal guarders are generally small fishes with small clutch sizes that produce large eggs. Pelagic spawners and egg scatterers are variable in adult and clutch size. Although pelagic spawned eggs are variable in size, those of scatterers are consistently small.

  7. Parasite fauna of selected fish species of Lake Miedwie.

    PubMed

    Sobecka, Ewa; Piasecki, Wojciech

    2002-01-01

    A total of 136 fishes, representing 9 species (perch, Perca fluviatilis L.; pike, Esox lucius L.; European eel, Anguilla anguilla (L.); common bream, Abramis brama (L.); roach, Rutilus rutilus (L.); tench Tinca tinca (L.); European whitefish, Coregonus lavaretus (L.); vendace, Coregonus albula (L.); and zander, Sander lucioperca (L.)), from Lake Miedwie were studied within 1997-1999. The necropsies yielded 41 parasite species (taxa). The most diversified were parasite faunas of pike (19 parasite species) and perch (16 species). The parasites found represented 13 higher taxa: Monera, Fungi, Protista, Myxozoa, Monogenea, Cestoda, Digenea, Nematoda, Acanthocephala, Branchiura, Copepoda, Mollusca, and Acarina. The parasites affecting fishes of Lake Miedwie exhibited diversified host-specificity. The most fish species were infected by metacercariae of Diplostomum spp. (8 fish species) and Tylodelphys clavata (7). Three fish species harboured: Ichthyocotylurus platycephalus, Ergasilus sieboldi, and glochidia Unionidae gen. sp. while Dermocystidium sp., Trichodinella epizootica, Henneguya psorospermica, Triaenophorus nodulosus, Posthodiplostomum cuticula, and Camallanus lacustris parasitised two host species. The remaining parasites were found in single fish species. PMID:16888943

  8. Fishing effects on energy use by North Sea fishes

    NASA Astrophysics Data System (ADS)

    Jennings, Simon; van Hal, Ralf; Hiddink, Jan G.; Maxwell, Tracy A. D.

    Fishing affects patterns of energy use in fish populations, as demonstrated by changes in population energy consumption and the size and age when energy demands are greatest. We compare theoretical predictions and observed patterns of energy use (expressed as the primary production required to support fish production) by North Sea fish, based on simple and widely applicable theory that links life history parameters, fishing mortality ( F), trophic transfer efficiency and relationships between size and trophic level (as determined using nitrogen stable isotope analysis). For the demersal species that dominate total biomass, relationships between size and trophic level were quite consistent among years. There were large decreases in relative energy requirements of all exploited demersal populations except plaice Pleuronectes platessa during the last 3 to 4 decades. Relative energy requirements of plaice were more stable because smaller plaice, which now dominate the exploited population, feed at higher trophic levels than larger plaice. The sizes and ages when population energy demands were greatest fell with increasing fishing mortality and differences between the predicted ( F = 0) and observed ages at maximum energy demand were greater in larger species. Currently, the energy demands of most species peak early in life (1-3 years) and largely reflect patterns of recruitment, leading to a homogenisation of the trophodynamics of the fish community. The fate of energy that is no longer used by commercially exploited species is not clear, partly because of the infrequent and untargeted monitoring of species that are more resilient to fishing. However, we conducted a preliminary assessment of the energy demands of solenette Buglossidium luteum, a very abundant small flatfish in the central North Sea that has increased in abundance in recent years. The solenette's high abundance and resilience to fishing, suggests that it now requires 35% of primary production in part of

  9. Mobile demersal megafauna at artificial structures in the German Bight - Likely effects of offshore wind farm development

    NASA Astrophysics Data System (ADS)

    Krone, R.; Gutow, L.; Brey, T.; Dannheim, J.; Schröder, A.

    2013-07-01

    Within the next few decades, large underwater structures of thousands of wind turbines in the northern European shelf seas will substantially increase the amount of habitat available for mobile demersal megafauna. As a first indication of the possible effects of this large scale habitat creation on faunal stocks settling on hard substrata, we compared selected taxa of the mobile demersal megafauna (decapods and fish) associated with the foundation of an offshore research platform (a wind-power foundation equivalent) with those of five shipwrecks and different areas of soft bottoms in the southern German Bight, North Sea. When comparing the amount of approximately 5000 planned wind-power foundations (covering 5.1 × 106 m2 of bottom area) with the existing number of at least 1000 shipwrecks (covering 1.2 × 106 m2 of bottom area), it becomes clear that the southern North Sea will provide about 4.3 times more available artificial hard substratum habitats than currently available. With regard to the fauna found on shipwrecks, on soft substrata and on the investigated wind-power foundation, we predict that the amount of added hard substrata will allow the stocks of substrata-limited mobile demersal hard bottom species to increase by 25-165% in that area. The fauna found at the offshore platform foundations is very similar to that at shipwrecks. Megafauna abundances at the foundations, however, are lower compared to those at the highly fractured wrecks and are irregularly scattered over the foundations. The upper regions of the platform construction (5 and 15 m depth) were only sparsely colonized by mobile fauna, the anchorages, however, more densely. The faunal assemblages from the shipwrecks and the foundations, respectively, as well as from the soft bottoms clearly differed from each other. We predict that new wind-power foundations will support the spread of hard bottom fauna into soft bottom areas with low wreck densities.

  10. Oral vaccination of fish: Lessons from humans and veterinary species.

    PubMed

    Embregts, Carmen W E; Forlenza, Maria

    2016-11-01

    The limited number of oral vaccines currently approved for use in humans and veterinary species clearly illustrates that development of efficacious and safe oral vaccines has been a challenge not only for fish immunologists. The insufficient efficacy of oral vaccines is partly due to antigen breakdown in the harsh gastric environment, but also to the high tolerogenic gut environment and to inadequate vaccine design. In this review we discuss current approaches used to develop oral vaccines for mass vaccination of farmed fish species. Furthermore, using various examples from the human and veterinary vaccine development, we propose additional approaches to fish vaccine design also considering recent advances in fish mucosal immunology and novel molecular tools. Finally, we discuss the pros and cons of using the zebrafish as a pre-screening animal model to potentially speed up vaccine design and testing for aquaculture fish species. PMID:27018298

  11. Classification of species attributes for Pacific Northwest freshwater fishes

    USGS Publications Warehouse

    Zaroban, D.W.; Mulvey, M.P.; Maret, T.R.; Hughes, R.M.; Merritt, G.D.

    1999-01-01

    Fish assemblages integrate physical and chemical habitat conditions and are used to evaluate the condition of water resources in the Pacific Northwest. To facilitate such evaluations, we classified each of the 132 freshwater fish species known to occur in the Pacific Northwest (Idaho, Oregon, Washington) by its origin, overall pollution tolerance, adult habitat, adult feeding, and water temperature preference. Recommendations from regional fishery experts, published literature, and the aggregate experience of the authors were used to classify species. The attribute classifications were responsive to human disturbance of aquatic habitats when applied to fish assemblages sampled from throughout the region. Our attribute classification of fish species promotes use of fish assemblages to evaluate water resource conditions regionally and fosters greater acceptance of biological measures of water resource quality.

  12. Modeling of Valued Fish Species in River Networks

    EPA Science Inventory

    Riverine fish provide many ecosystem services in support of human well-being, including food, recreation, and biodiversity. Under future drivers of land use and climate change, inland waters are likely to be impaired, and conservation and protection of fish species and services ...

  13. Impacts of fishing and environmental factors driving changes on littoral fish assemblages in a subtropical oceanic island

    NASA Astrophysics Data System (ADS)

    Sangil, Carlos; Martín-García, Laura; Hernández, José Carlos; Concepción, Laura; Fernández, Raúl; Clemente, Sabrina

    2013-08-01

    The structure of demersal fish assemblages of commercial interest was studied at 51 sites on La Palma Island (Canary Islands, northeastern Atlantic). On this island, demersal fish populations are limited and independent from other islands. As deep water separates the islands and the shallow sublittoral platforms are not continuous, adult inter-island migrations are not possible except between the islands of Lanzarote and Fuerteventura. Otherwise, each island functions as a closed system, and the status of an island fish assemblage depends on local environmental conditions and activities performed in situ by the islanders. These circumstances provide a unique opportunity to test the intrainsular variability of fish assemblages. With this background, environmental parameters, fishing pressure and distance to the MPA were considered to identify the main factors explaining the spatial variation of fish assemblages off La Palma Island. Twenty-six fish species were recorded, but 60% of the total fish biomass was represented by only five species (Sparisoma cretense, Pomadasys incisus, Canthidermis sufflamen, Diplodus cervinus cervinus and Bodianus scrofa). However, the structure of assemblages was heterogeneous in response to different variables and showed substantial spatial variation. The assemblages were strongly modified by the presence of upright seaweed cover, fishing activities, and certain environmental variables. Differences were more pronounced in species that occupied the higher trophic levels. The most disturbed assemblages were those located in areas with lower upright seaweed cover and with higher fishing pressure, whereas the best-preserved assemblages corresponded to sites with controlled fishing activities, located within the MPA.

  14. Implication of the visual system in the regulation of activity cycles in the absence of solar light: 2-[125I]iodomelatonin binding sites and melatonin receptor gene expression in the brains of demersal deep-sea gadiform fish

    PubMed Central

    Priede, I. G.; Williams, L. M.; Wagner, H.-J.; Thom, A.; Brierley, I.; Collins, M. A.; Collin, S. P.; Merrett, N. R.; Yau, C.

    1999-01-01

    Relative eye size, gross brain morphology and central localization of 2-[125I]iodomelatonin binding sites and melatonin receptor gene expression were compared in six gadiform fish living at different depths in the north-east Atlantic Ocean: Phycis blennoides (capture depth range 265 to 1260 m), Nezumia aequalis (445 to 1512 m), Coryphaenoides rupestris (706 to 1932 m), Trachyrincus murrayi (1010 to 1884 m), Coryphaenoides guentheri (1030 m) and Coryphaenoides (Nematonurus) armatus (2172 to 4787 m). Amongst these, the eye size range was 0.15 to 0.35 of head length with a value of 0.19 for C. (N.) armatus, the deepest species. Brain morphology reflected behavioural differences with well-developed olfactory regions in P. blennoides, T. murrayi and C. (N.) armatus and evidence of olfactory deficit in N. aequalis, C. rupestris and C. guentheri. All species had a clearly defined optic tectum with 2-[125I]iodomelatonin binding and melatonin receptor gene expression localized to specific brain regions in a similar pattern to that found in shallow-water fish. Melatonin receptors were found throughout the visual structures of the brains of all species. Despite living beyond the depth of penetration of solar light these fish have retained central features associated with the coupling of cycles of growth, behaviour and reproduction to the diel light–dark cycle. How this functions in the deep sea remains enigmatic.

  15. Molecular markers reveal spatially segregated cryptic species in a critically endangered fish, the common skate (Dipturus batis).

    PubMed

    Griffiths, Andrew M; Sims, David W; Cotterell, Stephen P; El Nagar, Aliya; Ellis, Jim R; Lynghammar, Arve; McHugh, Matthew; Neat, Francis C; Pade, Nicolas G; Queiroz, Nuno; Serra-Pereira, Bárbara; Rapp, Toby; Wearmouth, Victoria J; Genner, Martin J

    2010-05-22

    Many sharks and skates are particularly vulnerable to overfishing because of their large size, slow growth, late maturity and low fecundity. In Europe dramatic population declines have taken place in common skate (Dipturus batis L.), one of the largest demersal fish in regional shelf seas, leading to extirpations from substantial parts of its former range. Here we report the discovery of cryptic species in common skate collected from the northeast Atlantic continental shelf. Data from nuclear microsatellite markers indicated two clearly distinct clades and phylogenetic analysis of mitochondrial DNA sequences demonstrated monophyly of each one of them. Capture locations showed evidence of strong spatial segregation, with one taxon occurring mainly in waters off the southern British Isles and around Rockall, while the other was restricted to more northerly shelf waters. These apparently cryptic species showed overlapping substrate and depth preferences, but distributional limits were closely related to temperature gradients, potentially indicating thermal limits to their distributions. This discovery of hidden diversity within a large, critically endangered marine vertebrate demonstrates how marine biodiversity can be underestimated, even in such a relatively well-studied and heavily exploited region. PMID:20106849

  16. Methylmercury concentrations in six fish species from two Colombian rivers.

    PubMed

    Alvarez, Santiago; Jessick, Ashley M; Palacio, Jaime A; Kolok, Alan S

    2012-01-01

    The objective of this study was to determine whether fish collected from the La Miel or Nechí Rivers (Colombia) differed in muscle methyl mercury (meHg) concentration. Two fish from six different species were collected from markets adjacent to each river. Overall, fish collected from the market adjacent to the Nechí River contained higher levels of meHg. This result however is being driven by very high meHg concentrations in four individual fish, three of which are Pimelodid, long-whiskered catfish. These catfish may represent ideal sentinel organism for the detection of meHg contamination in Colombian rivers. PMID:22065125

  17. Development of Solar Drying Model for Selected Cambodian Fish Species

    PubMed Central

    Hubackova, Anna; Kucerova, Iva; Chrun, Rithy; Chaloupkova, Petra; Banout, Jan

    2014-01-01

    A solar drying was investigated as one of perspective techniques for fish processing in Cambodia. The solar drying was compared to conventional drying in electric oven. Five typical Cambodian fish species were selected for this study. Mean solar drying temperature and drying air relative humidity were 55.6°C and 19.9%, respectively. The overall solar dryer efficiency was 12.37%, which is typical for natural convection solar dryers. An average evaporative capacity of solar dryer was 0.049 kg·h−1. Based on coefficient of determination (R2), chi-square (χ2) test, and root-mean-square error (RMSE), the most suitable models describing natural convection solar drying kinetics were Logarithmic model, Diffusion approximate model, and Two-term model for climbing perch and Nile tilapia, swamp eel and walking catfish and Channa fish, respectively. In case of electric oven drying, the Modified Page 1 model shows the best results for all investigated fish species except Channa fish where the two-term model is the best one. Sensory evaluation shows that most preferable fish is climbing perch, followed by Nile tilapia and walking catfish. This study brings new knowledge about drying kinetics of fresh water fish species in Cambodia and confirms the solar drying as acceptable technology for fish processing. PMID:25250381

  18. Development of solar drying model for selected Cambodian fish species.

    PubMed

    Hubackova, Anna; Kucerova, Iva; Chrun, Rithy; Chaloupkova, Petra; Banout, Jan

    2014-01-01

    A solar drying was investigated as one of perspective techniques for fish processing in Cambodia. The solar drying was compared to conventional drying in electric oven. Five typical Cambodian fish species were selected for this study. Mean solar drying temperature and drying air relative humidity were 55.6 °C and 19.9%, respectively. The overall solar dryer efficiency was 12.37%, which is typical for natural convection solar dryers. An average evaporative capacity of solar dryer was 0.049 kg · h(-1). Based on coefficient of determination (R(2)), chi-square (χ(2)) test, and root-mean-square error (RMSE), the most suitable models describing natural convection solar drying kinetics were Logarithmic model, Diffusion approximate model, and Two-term model for climbing perch and Nile tilapia, swamp eel and walking catfish and Channa fish, respectively. In case of electric oven drying, the Modified Page 1 model shows the best results for all investigated fish species except Channa fish where the two-term model is the best one. Sensory evaluation shows that most preferable fish is climbing perch, followed by Nile tilapia and walking catfish. This study brings new knowledge about drying kinetics of fresh water fish species in Cambodia and confirms the solar drying as acceptable technology for fish processing. PMID:25250381

  19. Beyond the zebrafish: diverse fish species for modeling human disease

    PubMed Central

    Schartl, Manfred

    2014-01-01

    ABSTRACT In recent years, zebrafish, and to a lesser extent medaka, have become widely used small animal models for human diseases. These organisms have convincingly demonstrated the usefulness of fish for improving our understanding of the molecular and cellular mechanisms leading to pathological conditions, and for the development of new diagnostic and therapeutic tools. Despite the usefulness of zebrafish and medaka in the investigation of a wide spectrum of traits, there is evidence to suggest that other fish species could be better suited for more targeted questions. With the emergence of new, improved sequencing technologies that enable genomic resources to be generated with increasing efficiency and speed, the potential of non-mainstream fish species as disease models can now be explored. A key feature of these fish species is that the pathological condition that they model is often related to specific evolutionary adaptations. By exploring these adaptations, new disease-causing and disease-modifier genes might be identified; thus, diverse fish species could be exploited to better understand the complexity of disease processes. In addition, non-mainstream fish models could allow us to study the impact of environmental factors, as well as genetic variation, on complex disease phenotypes. This Review will discuss the opportunities that such fish models offer for current and future biomedical research. PMID:24271780

  20. Status of heavy metal residues in fish species of Pakistan.

    PubMed

    Hussain, Majid; Muhammad, Said; Malik, Riffat N; Khan, Muhammad U; Farooq, Umar

    2014-01-01

    In this review, we evaluate and summarize the available data that addresses the levels of HM that exist in aquatic species, mainly fish, of Pakistan. Data on this topic were collected from the literature of the last two decades (1990-2012). Results revealed that the highest number (>50%) of studies addressing HM-contaminated fish have occurred in the Punjab province, followed by the Sindh and Khyber Pakhtunkhwa provinces. Our review disclosed that the HM concentrations in Pakistani fish species varied considerably with location. Generally, the level of HM residues detected in fish species had the following descending order: Fe>Zn>Pb>Cd>Hg>Ni>Cu>Ag>Cr>Mn>As. Fish samples collected from the Kabul River near the Nowshera district, Stretch of Ravi River, Indus River near Mainwali district, and Arabian Sea at Karachi revealed extremely high HM concentrations (range: 0.34-8,381.30 jlg/g), compared to other fresh water bodies, such as the Llyold Barrage, Guddu Barrage, Jinnah Barrage, and Chashma Barrage (0.01-2.13 jlg/g). As a reference point, we also reviewed selected data on HM fish residues that exist in countries that neighbor Pakistan. With the exception of fish collected in India, the majority of fish analyzed for HM residues in neighboring countries displayed lower residues than did fish from Pakistan. We concluded from reviewing the available published data that the most probable sources for the HM contaminants found in Pakistani water and fish were release of domestic sewage, agricultural runoff, and industrial effluents. We strongly recommend that action be taken to better control the discharges of unregulated waste that enters the Pakistani aquatic environment, with the intent to mitigate any continuing future damage to the aquatic ecosystem. We also recommend intensifying research programs that address the toxicity of HM to the aquatic environment, so that a better understanding of metal effects on fish can be achieved that will lead to a sustainable

  1. Effects of Fishing and Regional Species Pool on the Functional Diversity of Fish Communities

    PubMed Central

    Martins, Gustavo M.; Arenas, Francisco; Neto, Ana I.; Jenkins, Stuart R.

    2012-01-01

    The potential population and community level impacts of fishing have received considerable attention, but little is known about how fishing influences communities’ functional diversity at regional scales. We examined how estimates of functional diversity differed among 25 regions of variable richness and investigated the functional consequences of removing species targeted by commercial fisheries. Our study shows that fishing leads to substantial losses in functional diversity. The magnitude of such loss was, however, reduced in the more speciose regions. Moreover, the removal of commercially targeted species caused a much larger reduction in functional diversity than expected by random species deletions, which was a consequence of the selective nature of fishing for particular species traits. Results suggest that functional redundancy is spatially variable, that richer biotas provide some degree of insurance against the impact of fishing on communities’ functional diversity and that fishing predominantly selects for particular species traits. Understanding how fishing impacts community functional diversity is key to predict its effects for biodiversity as well as ecosystem functioning. PMID:22952950

  2. Effects of fishing and regional species pool on the functional diversity of fish communities.

    PubMed

    Martins, Gustavo M; Arenas, Francisco; Neto, Ana I; Jenkins, Stuart R

    2012-01-01

    The potential population and community level impacts of fishing have received considerable attention, but little is known about how fishing influences communities' functional diversity at regional scales. We examined how estimates of functional diversity differed among 25 regions of variable richness and investigated the functional consequences of removing species targeted by commercial fisheries. Our study shows that fishing leads to substantial losses in functional diversity. The magnitude of such loss was, however, reduced in the more speciose regions. Moreover, the removal of commercially targeted species caused a much larger reduction in functional diversity than expected by random species deletions, which was a consequence of the selective nature of fishing for particular species traits. Results suggest that functional redundancy is spatially variable, that richer biotas provide some degree of insurance against the impact of fishing on communities' functional diversity and that fishing predominantly selects for particular species traits. Understanding how fishing impacts community functional diversity is key to predict its effects for biodiversity as well as ecosystem functioning. PMID:22952950

  3. Aggregation and species coexistence of ectoparasites of marine fishes.

    PubMed

    Morand, S; Poulin, R; Rohde, K; Hayward, C

    1999-05-01

    Interspecific interaction may lead to species exclusion but there are several ways in which species can coexist. One way is by reducing the overall intensity of competition via aggregated utilisation of fragmented resources. Known as the 'aggregation model of coexistence', this system assumes saturation and an equilibrium number of species per community. In this study we tested the effects of interspecific aggregation on the level of intraspecific aggregation among ectoparasites of marine fishes (36 communities of gill and head ectoparasite species). If parasite species are distributed in a way that interspecific aggregation is reduced relative to intraspecific aggregation then species coexistence is facilitated. We found a positive relationship between parasite species richness and fish body size, controlling for host phylogeny. A positive relationship between infracommunity species richness and total parasite species richness was also found, providing no evidence for saturation. This result supports the view that infracommunities of parasites are not saturated by local parasite residents. The observed lack of saturation implies that we are far from a full exploitation of the fish resource by parasites. Ectoparasites were aggregated at both population and species levels. However, only half of the ectoparasite communities were dominated by negative interspecific aggregation. We found that infracommunity parasite species richness was positively correlated with the level of intraspecific aggregation versus interspecific aggregation. This means that intraspecific aggregation increases compared with interspecific aggregation when total parasite species richness increases, controlling fish size and phylogeny. This supports one assumption of the 'aggregation model of coexistence', which predicts that interspecific interactions are reduced relative to intraspecific interactions, facilitating species coexistence. PMID:10404260

  4. Analysis of the parasitic copepod species richness among Mediterranean fish

    NASA Astrophysics Data System (ADS)

    Raibaut, André; Combes, Claude; Benoit, Françoise

    1998-06-01

    The Mediterranean ichthyofauna is composed of 652 species belonging to 405 genera and 117 families. Among these, 182 were studied for their parasitic copepods. The analysis of all the works conducted on these crustacea yielded 226 species distributed in 88 genera and 20 families. For each fish species we have established a file providing the species name of the fish, its family, its geographical distribution within the Mediterranean and some of its bio-ecological characteristics. Within each file, all the parasitic copepod species reported on each host species were listed. This allowed to know the species richness (SR) of these hosts. We thus produced 182 files within which 226 copepod species are distributed. A program was created under the Hypercard software, in order to analyse our data. Two parameters were studied. The first one is the mean species richness (MSR), which corresponds to the mean of the different SR found on the different host species. The second is the parasite-host ratio (P/H), which is the ratio of the number of copepod species by the number of host species. These parameters are calculated by our program for all the 182 species of Mediterranean fishes retained in our investigation, on the first hand, and, on the second hand, for one particular group of fish species. We used the following variables to investigate their correlations with copepod species richness: taxonomy—fish families, genera and species; biometry—maximal size of the adult fish; eco-ethology—mode of life (benthic, pelagic or nectonic), displacements (sedentary, migratory with environmental change, or migratory without environmental change), behaviour (solitary or gregarious). Other variables (colour, food, reproduction, abundance, distribution area) were also analysed but did not reveal any clear correlation. Providing that our study does not rely on quantitative (prevalence, intensity) but qualitative basis our aim was only to reveal some tendencies. These tendencies are

  5. [On the Features of Embryonic Cleavage in Diverse Fish Species].

    PubMed

    Desnitskiy, A G

    2015-01-01

    Literature on the earliest steps of fish embryogenesis (including a number of "non-model" species) has been considered. The main attention has been paid to the loss of cleavage division synchrony and the first latitudinal cleavage furrow. In teleostean embryos, the features of their meroblastic cleavage are not rigidly associated with egg size. The midblastula transition (in a form clearly enough) occurs in some chondrostean and teleostean fishes, but it has not been detected in the representatives of sarcopterygian and chondrichthyan fishes. PMID:26859966

  6. Genetic assessment of ornamental fish species from North East India.

    PubMed

    Dhar, Bishal; Ghosh, Sankar Kumar

    2015-01-25

    Ornamental fishes are traded with multiple names from various parts around the world, including North East India. Most are collected from the wild, due to lack of species-specific culture or breeding, and therefore, such unmanaged collection of the wild and endemic species could lead to severe threats to biodiversity. Despite many regulatory policies, trade of threatened species, including the IUCN listed species have been largely uncontrolled, due to species identification problems arising from the utilization of multiple trade names. So, the development of species-specific DNA marker is indispensable where DNA Barcoding is proved to be helpful in species identification. Here, we investigated, through DNA Barcoding and morphological assessment, the identification of 128 ornamental fish specimens exported from NE India from different exporters. The generated sequences were subjected to similarity match in BOLD-IDS as well as BLASTN, and analysed using MEGA5.2 for species identification through Neighbour-Joining (NJ) clustering, and K2P distance based approach. The analysis revealed straightforward identification of 84 specimens into 35 species, while 44 specimens were difficult to distinguish based on CO1 barcode alone. However, these cases were resolved through morphology, NJ and distanced based method and found to be belonging to 16 species. Among the 51 identified species, 14 species represented multiple trade names; 17 species belonged to threatened category. Species-level identification through DNA Barcoding along with traditional morphotaxonomy reflects its efficacy in regulating ornamental fish trade and therefore, appeals for their conservation in nature. The use of trade names rather than the zoological name created the passage for trafficking of the threatened species and demands immediate attention for sustaining wildlife conservation. PMID:25447914

  7. Seasonal changes in the demersal nekton community off the Changjiang River estuary

    NASA Astrophysics Data System (ADS)

    Jiang, Yazhou; Ling, Jianzhong; Li, Jiansheng; Yang, Linlin; Li, Shengfa

    2014-03-01

    The diversity, community structure and seasonal variation in demersal nekton off the Changjiang (Yangtze) River estuary was evaluated using monthly trawl survey data, collected between December 2008 and November 2009. A total of 95 species (56 teleosts, 11 cephalopods, and 28 decapod crustaceans) from 69 genera, 49 families and 15 orders were collected. These species could be classified into six groups on the basis of temporal distribution patterns. The resident crab Ovalipes punctatus dominated the community, both in number and biomass. A clear seasonal succession was observed in the species composition. Cluster analysis revealed three primary seasonal groups corresponding to the samples collected in winter-spring, late spring-summer and late summer-autumn. The highest biomass and lowest diversity were observed in summer, while the lowest biomass and highest diversity in winter. The abundance-biomass comparison curves and community composition suggested that the investigated community was moderately disturbed. The results suggest that reduction in fishing pressure and in the degree of seasonal hypoxia are essential for sustainable resource management off the Changjiang River estuary.

  8. DNA barcoding and molecular systematics of the benthic and demersal organisms of the CEAMARC survey

    NASA Astrophysics Data System (ADS)

    Dettai, Agnes; Adamowizc, Sarah J.; Allcock, Louise; Arango, Claudia P.; Barnes, David K. A.; Barratt, Iain; Chenuil, Anne; Couloux, Arnaud; Cruaud, Corinne; David, Bruno; Denis, Françoise; Denys, Gael; Díaz, Angie; Eléaume, Marc; Féral, Jean-Pierre; Froger, Aurélie; Gallut, Cyril; Grant, Rachel; Griffiths, Huw J.; Held, Christoph; Hemery, Lenaïg G.; Hosie, Graham; Kuklinski, Piotr; Lecointre, Guillaume; Linse, Katrin; Lozouet, Pierre; Mah, Christopher; Monniot, Françoise; Norman, Mark D.; O'Hara, Timothy; Ozouf-Costaz, Catherine; Piedallu, Claire; Pierrat, Benjamin; Poulin, Elie; Puillandre, Nicolas; Riddle, Martin; Samadi, Sarah; Saucède, Thomas; Schubart, Christoph; Smith, Peter J.; Stevens, Darren W.; Steinke, Dirk; Strugnell, Jan M.; Tarnowska, K.; Wadley, Victoria; Ameziane, Nadia

    2011-08-01

    The Dumont d’Urville Sea (East Antarctic region) has been less investigated for DNA barcoding and molecular taxonomy than other parts of the Southern Ocean, such as the Ross Sea and the Antarctic Peninsula. The Collaborative East Antarctic MARine Census (CEAMARC) took place in this area during the austral summer of 2007-2008. The Australian vessel RSV Aurora Australis collected very diverse samples of demersal and benthic organisms. The specimens were sorted centrally, and then distributed to taxonomic experts for molecular and morphological taxonomy and identification, especially barcoding. The COI sequences generated from CEAMARC material provide a sizeable proportion of the Census of Antarctic Marine Life barcodes although the studies are still ongoing, and represent the only source of sequences for a number of species. Barcoding appears to be a valuable method for identification within most groups, despite low divergences and haplotype sharing in a few species, and it is also useful as a preliminary taxonomic exploration method. Several new species are being described. CEAMARC samples have already provided new material for phylogeographic and phylogenetic studies in cephalopods, pycnogonids, teleost fish, crinoids and sea urchins, helping these studies to provide a better insight in the patterns of evolution in the Southern Ocean.

  9. Trophic interactions between native and introduced fish species in a littoral fish community.

    PubMed

    Monroy, M; Maceda-Veiga, A; Caiola, N; De Sostoa, A

    2014-11-01

    The trophic interactions between 15 native and two introduced fish species, silverside Odontesthes bonariensis and rainbow trout Oncorhynchus mykiss, collected in a major fishery area at Lake Titicaca were explored by integrating traditional ecological knowledge and stable-isotope analyses (SIA). SIA suggested the existence of six trophic groups in this fish community based on δ(13)C and δ(15)N signatures. This was supported by ecological evidence illustrating marked spatial segregation between groups, but a similar trophic level for most of the native groups. Based on Bayesian ellipse analyses, niche overlap appeared to occur between small O. bonariensis (<90 mm) and benthopelagic native species (31.6%), and between the native pelagic killifish Orestias ispi and large O. bonariensis (39%) or O. mykiss (19.7%). In addition, Bayesian mixing models suggested that O. ispi and epipelagic species are likely to be the main prey items for the two introduced fish species. This study reveals a trophic link between native and introduced fish species, and demonstrates the utility of combining both SIA and traditional ecological knowledge to understand trophic relationships between fish species with similar feeding habits. PMID:25263642

  10. Value-added products from underutilized fish species.

    PubMed

    Venugopal, V; Shahidi, F

    1995-09-01

    Fish is a rich source of easily digestible protein that also provides polyunsaturated fatty acids, vitamins, and minerals for human nutrition. Nonetheless, a large proportion of total landed fish remains unused due to inherent problems related to unattractive color, flavor, texture, small size, and high fat content. Most of these underutilized fish belong to the abundantly available pelagic species, which are landed as bycatch, and some are unconventional species such as krill. Although some species are used industrially for fish meal manufacture, a need for their conservation and utilization for human consumption has been recognized in order to prevent post-harvest fishery losses. Recovery of flesh by mechanical deboning and development of value-added products are probably the most promising approaches. This article discusses various possibilities for product development using mince from low-cost fishery resources. These include surimi and surimi-based products, sausages, fermented products, protein concentrates and hydrolysates, extruded products, and biotechnological possibilities. The dual advantages of this approach, namely, finding ways for better utilization of low-value fish species and providing protein- rich convenience foods, have been pointed out. However, the key to the success of this approach depends largely on the market strategies utilized. PMID:8573282

  11. [Fatty acids in different edible fish species from Mexico].

    PubMed

    Castro González, María Isabel; Rodríguez, Ana Gabriela Maafs; Galindo Gómez, Carlos

    2013-12-01

    Different biotic and abiotic factors determine the fatty acid (FA) composition of fish tissues and organs. This information is useful for humans due to the fact that fish consumption is associated with health benefits. The aim of the present study was to identify the variation in the concentration of fatty acids, according to different factors, among ten edible marine fish species in Mexico, collected from June to December 2009 in the largest fish market in Mexico City: Euthynnus alletteratus, Sciaenops ocellatus, Bairdiella chrysoura, Sphyraena guachancho, Symphurus elongatus, Istiophorus platypterus, Ophichthus rex, Eugerres plumieri, Eucinostomus entomelas and Oreochromrnis mossambicus. Lipid content was gravimetrically quantified, the fatty acids were determined using a gas chromatograph and the results were statistically analyzed. Total lipid content ranged from 0.93 to 1.95 g/100 g in E. entomelas and O. urolepis hornorum, respectively. E. alletteratus, B. chrysoura, S. elongatus, I. platypterus, O. rex and E. plumieri presented the following order in FA concentration: Polyunsaturated FA (PUFA)>Saturated FA (SFA)>Monounsaturated FA (MUFA). S. ocellatus, S. guachancho and E. entomelas presented SFA>PUFA>MUFA; and only O. mossambicus presented SFA>MUFA>PUFA. O. mossambicus had the highest concentration (mg/100 g) of SFA (559.40) and MUFA (442.60), while B. chrysoura presented the highest content (mg/100 g) of PUFA (663.03), n-3 PUFA (514.03), EPA+DHA (506.10) and n-6 PUFA (145.80). Biotic and abiotic factors of the analyzed fish significantly influenced their FA concentration. Subtropical species presented 42.1% more EPA+DHA than tropical specie. Values presented here will vary according to the changes in the ecosystem and characteristics of each fish species, however the information generated in the present study is useful for improving fish consumption recommendations. PMID:24432548

  12. Accounting for Incomplete Species Detection in Fish Community Monitoring

    SciTech Connect

    McManamay, Ryan A; Orth, Dr. Donald J; Jager, Yetta

    2013-01-01

    Riverine fish assemblages are heterogeneous and very difficult to characterize with a one-size-fits-all approach to sampling. Furthermore, detecting changes in fish assemblages over time requires accounting for variation in sampling designs. We present a modeling approach that permits heterogeneous sampling by accounting for site and sampling covariates (including method) in a model-based framework for estimation (versus a sampling-based framework). We snorkeled during three surveys and electrofished during a single survey in suite of delineated habitats stratified by reach types. We developed single-species occupancy models to determine covariates influencing patch occupancy and species detection probabilities whereas community occupancy models estimated species richness in light of incomplete detections. For most species, information-theoretic criteria showed higher support for models that included patch size and reach as covariates of occupancy. In addition, models including patch size and sampling method as covariates of detection probabilities also had higher support. Detection probability estimates for snorkeling surveys were higher for larger non-benthic species whereas electrofishing was more effective at detecting smaller benthic species. The number of sites and sampling occasions required to accurately estimate occupancy varied among fish species. For rare benthic species, our results suggested that higher number of occasions, and especially the addition of electrofishing, may be required to improve detection probabilities and obtain accurate occupancy estimates. Community models suggested that richness was 41% higher than the number of species actually observed and the addition of an electrofishing survey increased estimated richness by 13%. These results can be useful to future fish assemblage monitoring efforts by informing sampling designs, such as site selection (e.g. stratifying based on patch size) and determining effort required (e.g. number of

  13. Some organochlorine pesticide residues in fish species in Konya, Turkey.

    PubMed

    Kalyoncu, Leyla; Agca, Ihsan; Aktumsek, Abdurrahman

    2009-02-01

    The levels of organochlorine pesticides were measured in 18 fish species from Konya markets, Turkey. These species were selected on the basis of their importance to local human fish consumption. The extracted residues were analyzed on a micro capillary gas chromatograph equipped with an electron capture detector. Total 14 different organochlorine pesticides were determined. These residues were detected in all fish species, except in trout, horse mackerel and bonito. DDT and its metabolites and HCH were the predominant contaminants in fish muscles. The mean concentrations of summation operator DDT were in the range between 0.0008 and 0.0828 microg g(-1). DDT was the predominant residue in Sparus aurata. Detectable levels of HCH, aldrin, and heptachlor were found in most samples. However, dieldrin, endrin, beta endosulfan, p-p' DDT, and p-p' DDD were not found in Salmo trutta. The mean of endrin ranged from 0.0040 microg g(-1) (Triglia lineate) to 0.0326 microg g(-1) (Trachurus trachurus). These results give no indication of important health risks associated with the consumption of these fishes in Konya markets. PMID:19103455

  14. Fish and wildlife species as sentinels of environmental endocrine disruption

    USGS Publications Warehouse

    Sheffield, S.R.; Matter, J.M.; Rattner, B.A.; Guiney, P.D.

    1998-01-01

    This chapter provides an overview of the history and criteria for use of captive and free-ranging fish and wildlife (amphibians, reptiles, birds, and mammals) species as sentinels of potential environmental endocrine disruption. Biochemical, behavioral, physiological, immunological, genetic, reproductive, developmental, and ecological correlates of endocrine disruption in these sentinels are presented and reviewed. In addition, data needs to promote better use of sentinel species in the assessment of endocrine disruption are discussed.

  15. THREATENED AND ENDANGERED FRESHWATER FISH AND MUSSEL SPECIES RICHNESS

    EPA Science Inventory

    These data represent predicted current distributions of all US listed Threatened and Endangered freshwater fish and freshwater mussels in the Middle-Atlantic region. The data are available for both 8-digit HUCs and EMAP hexagons and represent total species counts for each spatia...

  16. Abundance and tidal behaviour of pelagic fish in the gateway to the Wadden Sea

    NASA Astrophysics Data System (ADS)

    Couperus, Bram; Gastauer, Sven; Fässler, Sascha M. M.; Tulp, Ingrid; van der Veer, Henk W.; Poos, Jan Jaap

    2016-03-01

    The shallow coast of The Netherlands is an important habitat for small pelagic fish. They form one of the major links between plankton and the higher trophic levels. Predatory fish, sea mammals and birds rely on small pelagic fish as a major food source. Currently, monitoring of fish in the Dutch coastal zone mainly focuses on demersal species, using bottom trawls and fykes. Four hydro-acoustic surveys were carried out in May and October 2010/2011 in the Marsdiep area, a relatively deep tidal inlet in the western Wadden Sea, to quantify abundances of pelagic fish. The aims of this study were to (1) describe temporal and vertical variations in fish distribution and school dimensions in relation to tide, and (2) estimate biomass of pelagic fish and their proportion to total fish biomass. The biomass of pelagic fish in the Marsdiep area ranged between 23 and 411 kg/ha. These were mainly sprat, but also young herring, anchovy and pilchard. The fish was scattered in small schools with volumes smaller than 5m3 and concentrated in the top 10 m below the surface. There was a clear effect of tidal cycle on school volume and fish abundance, with larger densities and larger schools at high tide compared to low tide. In May, sandeel contributed substantially to the pelagic assemblage, whereas in October sandeel was absent in the trawl catches, most likely because they stayed buried in the seabed from late summer to spring. The presence of pilchard and anchovy confirmed their re-establishment in the Southern North Sea and Wadden Sea. The abundance of pelagic fish exceeded the biomass of demersal fish in the western Wadden Sea by an order of magnitude. This finding is relevant for ecosystem studies. The fact that this study suggests that small pelagics outnumber demersal species to such a large extent calls for a rethinking of the allocation of monitoring effort in the Dutch coastal zone.

  17. Liquid chromatographic determination of oxytetracycline in edible fish fillets from six species of fish

    USGS Publications Warehouse

    Meinertz, J.R.; Stehly, G.R.; Gingerich, W.H.

    1998-01-01

    The approved use of oxytetracycline (OTC) in U.S. Aquaculture is limited to specific diseases in salmonids and channel catfish. OTC may also be effective in controlling diseases in other fish species important to public aquaculture, but before approved use of OTC can be augmented, an analytical method for determining OTC in fillet tissue from multiple species of fish will be required to support residue depletion studies. The objective of this study was to develop and validate a liquid chromatographic (LC) method that is accurate, precise, and sensitive for OTC in edible fillets from multiple species of fish. Homogenized fillet tissues from walleye, Atlantic salmon, striped bass, white sturgeon, rainbow trout, and channel catfish were fortified with OTC at nominal concentrations of 10, 20, 100, 1000, and 5000 ng/g. In tissues fortified with OTC at 100, 1000, and 5000 ng/g, mean recoveries ranged from 83 to 90%, and relative standard deviations (RSDs) ranged from 0.9 to 5.8%. In all other tissues, mean recoveries ranged from 59 to 98%, and RSDs ranged from 3.3 to 20%. Method quantitation limits ranged from 6 to 22 ng/g for the 6 species. The LC parameters produced easily integratable OTC peaks without coelution of endogenous compounds. The method is accurate, precise, and sensitive for OTC in fillet tissue from 6 species of fish from 5 phylogenetically diverse groups.

  18. Fish introductions reveal the temperature dependence of species interactions.

    PubMed

    Hein, Catherine L; Öhlund, Gunnar; Englund, Göran

    2014-01-22

    A major area of current research is to understand how climate change will impact species interactions and ultimately biodiversity. A variety of environmental conditions are rapidly changing owing to climate warming, and these conditions often affect both the strength and outcome of species interactions. We used fish distributions and replicated fish introductions to investigate environmental conditions influencing the coexistence of two fishes in Swedish lakes: brown trout (Salmo trutta) and pike (Esox lucius). A logistic regression model of brown trout and pike coexistence showed that these species coexist in large lakes (more than 4.5 km(2)), but not in small, warm lakes (annual air temperature more than 0.9-1.5°C). We then explored how climate change will alter coexistence by substituting climate scenarios for 2091-2100 into our model. The model predicts that brown trout will be extirpated from approximately half of the lakes where they presently coexist with pike and from nearly all 9100 lakes where pike are predicted to invade. Context dependency was critical for understanding pike-brown trout interactions, and, given the widespread occurrence of context-dependent species interactions, this aspect will probably be critical for accurately predicting climate impacts on biodiversity. PMID:24307673

  19. Fish introductions reveal the temperature dependence of species interactions

    PubMed Central

    Hein, Catherine L.; Öhlund, Gunnar; Englund, Göran

    2014-01-01

    A major area of current research is to understand how climate change will impact species interactions and ultimately biodiversity. A variety of environmental conditions are rapidly changing owing to climate warming, and these conditions often affect both the strength and outcome of species interactions. We used fish distributions and replicated fish introductions to investigate environmental conditions influencing the coexistence of two fishes in Swedish lakes: brown trout (Salmo trutta) and pike (Esox lucius). A logistic regression model of brown trout and pike coexistence showed that these species coexist in large lakes (more than 4.5 km2), but not in small, warm lakes (annual air temperature more than 0.9–1.5°C). We then explored how climate change will alter coexistence by substituting climate scenarios for 2091–2100 into our model. The model predicts that brown trout will be extirpated from approximately half of the lakes where they presently coexist with pike and from nearly all 9100 lakes where pike are predicted to invade. Context dependency was critical for understanding pike–brown trout interactions, and, given the widespread occurrence of context-dependent species interactions, this aspect will probably be critical for accurately predicting climate impacts on biodiversity. PMID:24307673

  20. Four parasitic Crustacean species from marine fishes of Turkey.

    PubMed

    Oguz, Mehmet Cemal; Oktener, Ahmet

    2007-01-01

    The aim of this work was to present a preliminary knowledge of the parasitic copepods of marine fish of Turkey. In this study, four parasitic crustaceans were reported from five different fish species found in Turkish seas: Lepeophtheirus europaensis (Zeddam, Berrebi, Renaud, Raibaut & Gabrion, 1988) was found on the gills of the European flounder, Platichtys flesus (Linnaeus, 1758 (Pleuronectidae); Nerocila bivittata (Risso, 1816) on caudal peduncles of east Atlantic peacock wrasse, Symphodus tinca (Linnaeus, 1758) (Labridae); Ceratothoa oestroides (Risso, 1826), on the mouth base of European pilchard, Sardina pilchardus (Walbaum, 1792) (Clupeidae); Anilocra physodes (Linnaeus, 1758), on the body surface of gilthead seabreams, Sparus aurata Linnaeus, 1758 (Sparidae) and on horse mackerel, Trachurus trachurus (Linnaeus, 1758) (Carangidae). Also, a list of the parasitic copepods previously reported from marine fishes of Turkey since 1931 is given, with a new report of the host species, the localities where they were collected and the corresponding authors. At the present time, 23 parasitic copepods have been recorded from 25 host fish of Turkish coasts. Lepeophtheirus europaensis Zeddam, Berrebi, Renaud, Raibaut & Gabrion, 1988 was reported for the first time in Turkish coastal waters. PMID:17471420

  1. Characterization of antioxidant system parameters in four freshwater fish species.

    PubMed

    Atli, Gülüzar; Canli, Esin G; Eroglu, Ali; Canli, Mustafa

    2016-04-01

    The potential use of antioxidant system parameters has gained considerable interest due to their pivotal role of detoxification mechanisms in environmental studies and culture fish point of view. Fish with different ecological needs may have different antioxidant capacity and response to environmental contaminants. Thus, the optimal working conditions and specific enzyme activities (Vmax and Km) of antioxidant system parameters (Superoxide dismutase, SOD; Catalase, CAT; Glutathione peroxidase, GPX; Glutathione reductase, GR and Glutathione S-transferase, GST) and glutathione (GSH) were determined in four commonly cultured freshwater fish species (tilapia; Oreochromis niloticus, carp; Cyprinus carpio, trout; Onchorhynchus mykiss and catfish; Clarias garipienus). Data showed that optimal concentrations of different buffers, pH and specific chemicals for each enzyme and GSH were similar in most cases for all fish species, except a few differences. The highest Vmax and Km values were found in carp for GPX and GST, though these values were the highest in tilapia, catfish and trout for CAT, SOD and GR, respectively. As a conclusion, optimization assays of these parameters in different bioindicator organisms based on their physiological and ecological differences may be useful for the aquatic ecosystem biomonitoring studies and also present fundamental data for utilization in aquaculture. PMID:26707186

  2. Global patterns and predictors of fish species richness in estuaries.

    PubMed

    Vasconcelos, Rita P; Henriques, Sofia; França, Susana; Pasquaud, Stéphanie; Cardoso, Inês; Laborde, Marina; Cabral, Henrique N

    2015-09-01

    1. Knowledge of global patterns of biodiversity and regulating variables is indispensable to develop predictive models. 2. The present study used predictive modelling approaches to investigate hypotheses that explain the variation in fish species richness between estuaries over a worldwide spatial extent. Ultimately, such models will allow assessment of future changes in ecosystem structure and function as a result of environmental changes. 3. A comprehensive worldwide data base was compiled of the fish assemblage composition and environmental characteristics of estuaries. Generalized Linear Models were used to quantify how variation in species richness among estuaries is related to historical events, energy dynamics and ecosystem characteristics, while controlling for sampling effects. 4. At the global extent, species richness differed among marine biogeographic realms and continents and increased with mean sea surface temperature, terrestrial net primary productivity and the stability of connectivity with a marine ecosystem (open vs. temporarily open estuaries). At a smaller extent (within a marine biogeographic realm or continent), other characteristics were also important in predicting variation in species richness, with species richness increasing with estuary area and continental shelf width. 5. The results suggest that species richness in an estuary is defined by predictors that are spatially hierarchical. Over the largest spatial extents, species richness is influenced by the broader distributions and habitat use patterns of marine and freshwater species that can colonize estuaries, which are in turn governed by history contingency, energy dynamics and productivity variables. Species richness is also influenced by more regional and local parameters that can further affect the process of community colonization in an estuary including the connectivity of the estuary with the adjacent marine habitat, and, over smaller spatial extents, the size of these

  3. DISTRIBUTIONS OF LAKE FISHES OF THE NORTHEAST USA--III. SALMONIDAE AND ASSOCIATED COLDWATER SPECIES

    EPA Science Inventory

    We present distributional maps and discuss native status for fish species characteristic of coldwater lakes, sampled from 203 randomly selected lakes in the northeastern USA (New England, New York, New Jersey). Eleven coldwater fish species from four families (Salmonidae, Osmeri...

  4. Mineral Element Contents in Commercially Valuable Fish Species in Spain

    PubMed Central

    Peña-Rivas, Luis; Ortega, Eduardo; López-Martínez, Concepción; Olea-Serrano, Fátima; Lorenzo, Maria Luisa

    2014-01-01

    The aim of this study was to measure selected metal concentrations in Trachurus trachurus, Trachurus picturatus, and Trachurus mediterraneus, which are widely consumed in Spain. Principal component analysis suggested that the variable Cr was the main responsible variable for the identification of T. trachurus, the variables As and Sn for T. mediterraneus, and the rest of variables for T. picturatus. This well-defined discrimination between fish species provided by mineral element allows us to distinguish them on the basis of their metal content. Based on the samples collected, and recognizing the inferential limitation of the sample size of this study, the metal concentrations found are below the proposed limit values for human consumption. However, it should be taken into consideration that there are other dietary sources of these metals. In conclusion, metal contents in the fish species analyzed are acceptable for human consumption from a nutritional and toxicity point of view. PMID:24895678

  5. Predicting fish species distribution in estuaries: Influence of species' ecology in model accuracy

    NASA Astrophysics Data System (ADS)

    França, Susana; Cabral, Henrique N.

    2016-10-01

    Current threats to biodiversity, combined with limited data availability, have made for species distribution models (SDMs) to be increasingly used due to their ability to predict species' potential distribution, by relating species occurrence with environmental estimates. Often used in ecology, conservation biology and environmental management, SDMs have been informing conservation strategies, and thus it is becoming crucial to understand how trustworthy their predictions are. Uncertainty in model predictions is expected, but knowing the origin of prediction errors may help reducing it. Indeed, uncertainty may be related not only with data quality and the modelling algorithm used, but also with species ecological characteristics. To investigate whether the performance of SDM's may vary with species' ecological characteristics, distribution models for 21 fish species occurring in estuaries from the Portuguese coast were examined. These models were built at two distinct spatial resolutions and seven environmental explanatory variables were used as predictors. SDMs' accuracy was assessed with the area under the curve (AUC) of receiver operating characteristics (ROC) plots, sensitivity and specificity. Relationships between each measure of accuracy and species ecological characteristics were then examined. SDMs of the fish species presented small differences between the considered scales, and predictors as latitude, temperature and salinity were often selected at both scales. Measures of model accuracy presented differences between species and scales, but generally higher accuracy was obtained at smaller spatial scales. Among the ecological traits tested, species feeding mode and estuarine use functional groups were the most influential on the performance of distribution models. Habitat tolerance (number of habitat types frequented), species abundance, body size and spawning period also showed some effect. This analyses will contribute to distinguish, based on species

  6. Ontogenetic variation in the body stoichiometry of two fish species.

    PubMed

    Boros, Gergely; Sály, Péter; Vanni, Michael J

    2015-10-01

    One of the central questions of ecological stoichiometry theory is to what extent animal species maintain constant elemental composition in their bodies. Although several recent studies demonstrate intraspecific variation in animal elemental composition, relatively little is known about ontogenetic changes in vertebrates, especially during early life stages. We studied the intraspecific and interspecific ontogenetic variation in the body stoichiometry of two fish species in two different orders; fathead minnow (Pimephales promelas) and sheepshead minnow (Cyprinodon variegatus), reared under controlled laboratory conditions. During ontogeny, we measured the chemical composition of fish bodies, including carbon (C), nitrogen (N), phosphorus (P), calcium (Ca), and ribonucleic acid (RNA) contents. We found that N and RNA contents were relatively high in early life stages and declined substantially during development. In contrast, body C and C:N ratios were relatively low in embryos, post-embryos and larvae, and increased remarkably thereafter. Concentrations and ratios of some elements (e.g., Ca, P, Ca:P) did not exhibit consistent ontogenetic trends, but fluctuated dynamically between consecutive developmental stages in both species. Specific growth rates correlated significantly with RNA contents in both species. Analyses of the relative importance of different P pools at each developmental stage revealed that RNA was a considerable P pool in post-embryos, while bone-associated P was the dominant body P pool in later stages. Our results suggest that the elemental composition of fish bodies changes considerably during ontogeny. Each ontogenetic stage has its own stoichiometric signature, but the timing, magnitude and direction of ontogenetic changes can vary substantially between taxa. PMID:25999048

  7. Species-specific patterns of hyperostosis in marine teleost fishes

    USGS Publications Warehouse

    Smith-Vaniz, William F.; Kaufman, L.S.; Glowacki, J.

    1995-01-01

    The occurrence of swollen or hyperostotic bones in skeletal preparations, preserved museum material or whole fresh specimens of marine teleost fishes was identified in 92 species belonging to 22 families. Patterns of hyperostotic skeletal growth were typically consistent and often species-specific in all individuals larger than a certain size. The taxonomic distribution of hyperostosis in diverse phylogenetic groups suggests that it has arisen independently many times. Selected bones from two species of the family Carangidae, horse-eye jack Caranx latus Agassiz and crevalle jackCaranx hippos (Linnaeus), were examined in detail by light and electron microscopy. Nonhyperostotic bone contained osteoid-producing osteoblasts, resorbing osteoclasts, occasional osteocytes, and a rich vascular network, all characteristics of cellular bone. Thus, these fishes have a spatial juxtaposition of cellular and acellular bone tissues in adjacent and often serially homologous bone sites. The functional significance of hyperostosis is unknown, but it is a predictable manifestation of bone growth and development for the many taxa in which it occurs.

  8. The influence of oceanographic scenarios on the population dynamics of demersal resources in the western Mediterranean: Hypothesis for hake and red shrimp off Balearic Islands

    NASA Astrophysics Data System (ADS)

    Massutí, Enric; Monserrat, Sebastià; Oliver, Pere; Moranta, Joan; López-Jurado, José Luis; Marcos, Marta; Hidalgo, Manuel; Guijarro, Beatriz; Carbonell, Aina; Pereda, Pilar

    2008-06-01

    The aim of the present paper is to study the relationships between some climatic indices and parental stock, recruitment and accessibility to trawl fishery of hake ( Merluccius merluccius) and red shrimp ( Aristeus antennatus) off Balearic Islands (western Mediterranean). Available annual catch per unit effort, recruitment and spawning stock biomass have been used as biological data. As environmental data, the meso-scale IDEA index and the large-scale North Atlantic Oscillation (NAO) and Mediterranean Oscillation (MO) indices have been used. To analyze possible links between these indices with the population dynamics of demersal resources, two non-linear approaches have been applied: (i) stock-recruitment relationships from Ricker and Beverton-Holt models, by sequentially incorporating environment factors; (ii) generalized additive modelling, both classical general and threshold non-additive models were considered. The latter simulate an abrupt change in explicative variables across different phases (time periods or climatic index values). The results have shown that two oceanographic scenarios around the Balearic Islands, associated with macro and meso-scale climate regimes, can influence the population dynamics of hake and red shrimp. This is especially true for recruitment, which seems to be enhanced during low NAO and IDEA indices periods. During these periods, colder-than-normal winters generate high amounts of cold Western Mediterranean Intermediate Waters (WIW) in the Gulf of Lions, which flow southwards and reach the Balearic Islands channels in spring, increasing the productivity in the area. This oceanographic scenario could also be favourable to the distribution of hake on the fishing grounds where the trawl fleet targets this species, increasing its accessibility to the fishery. Both spawning stock and abundance of red shrimp seems to be also enhanced by high MO index periods, which could reflect the increased presence of the saline and warm Levantine

  9. 76 FR 14923 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-03-18

    ... Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric.... seq) and regulations governing listed fish and wildlife permits (50 CFR parts 222-226). NMFS issues... groundfish species. The survey would collect data on 90+ fish species in the ocean to fulfill the mandates...

  10. Long-term functional changes in an estuarine fish assemblage.

    PubMed

    Baptista, J; Martinho, F; Nyitrai, D; Pardal, M A; Dolbeth, M

    2015-08-15

    The functional diversity of the fish assemblages of the Mondego estuary was studied for a discontinuous 30-year period (1988-2012). During this time, hydrological changes occurred due to man-induced alterations and weather extremes. These changes led to alterations in the structure and function of the fish community. Species richness and functional richness decreased over time and the fish community started to explore new micro-habitats and food resources. Before severe hydrological changes, the community was dominated by pelagic, detritivorous and species with wider salinity ranges. After, the community became dominated by demersal, benthic, piscivorous and marine species. During a drought, omnivorous became increasingly important, reflecting greater possibilities of using available feeding resources. We have also found an increase in sub-tropical species throughout the years, which might be related to gradual temperature increases at a global scale. This study also confirmed estuaries as extremely important for restocking several commercial species. PMID:26093816

  11. Three unrecorded marine fish species from Korean waters

    NASA Astrophysics Data System (ADS)

    Park, Jeong-Ho; Kim, Jin Koo; Moon, Jee Hwan; Kim, Cheol Bum

    2007-12-01

    Three marine fish species are recorded for the first time from Korean waters: a molid (Ranzania laevis, 1 specimen, 279.8 mm SL) and bramid ( Pterycombus petersii, 3 specimens, 95.3-214.0 mm SL) collected from a large purse seine off Jeju Island, in the southern sea of Korea, and a carangid ( Carangoides dinema, 1 specimen, 194.5 mm SL) from a set net in coastal waters off Busan, in the southeastern sea of Korea. R. laevis is characterized by a wedge-shaped body and truncated clavus; P. petersii by the dorsal fin origin above or behind the posterior margin of eye, and dorsal and anal fins depressible; and C. dinema by a row of black blotches along the second dorsal fin base, the curved part of the lateral line longer than straight part, and 18 and 16 dorsal and anal fin rays, respectively. New Korean names are proposed for all three species.

  12. Target strengths of two abundant mesopelagic fish species.

    PubMed

    Scoulding, Ben; Chu, Dezhang; Ona, Egil; Fernandes, Paul G

    2015-02-01

    Mesopelagic fish of the Myctophidae and Sternoptychidae families dominate the biomass of the oceanic deep scattering layers and, therefore, have important ecological roles within these ecosystems. Interest in the commercial exploitation of these fish is growing, so the development of techniques for estimating their abundance, distribution and, ultimately, sustainable exploitation are essential. The acoustic backscattering characteristics for two size classes of Maurolicus muelleri and Benthosema glaciale are reported here based on swimbladder morphology derived from digitized soft x-ray images, and empirical (in situ) measurements of target strength (TS) derived from an acoustic survey in a Norwegian Sea. A backscattering model based on a gas-filled prolate spheroid was used to predict the theoretical TS for both species across a frequency range between 0 and 250 kHz. Sensitivity analyses of the TS model to the modeling parameters indicate that TS is rather sensitive to the viscosity, swimbladder volume ratio, and tilt, which can result in substantial changes to the TS. Theoretical TS predictions close to the resonance frequency were in good agreement (±2 dB) with mean in situ TS derived from the areas acoustically surveyed that were spatially and temporally consistent with the trawl information for both species. PMID:25698030

  13. Habitat characteristics as determinant of the structure and spatial distribution of epibenthic and demersal communities of Le Danois Bank (Cantabrian Sea, N. Spain)

    NASA Astrophysics Data System (ADS)

    Sánchez, F.; Serrano, A.; Parra, S.; Ballesteros, M.; Cartes, J. E.

    2008-07-01

    The purpose of this paper is to detect and describe general trends in the spatial distribution of epibenthic and demersal communities of Le Danois Bank (El Cachucho) in relation to the environmental variables that characterize their habitat by means of multivariate ordination. Data were derived from two multidisciplinary surveys carried out in October 2003 and April 2004 included in the ECOMARG project. The surveys were focused on the study of the physical scenario, including both geological (seabed characterization from bathymetry and backscatter data) and hydrographic features, and the different compartments of the benthic fauna (endobenthic, epibenthic, suprabenthic and demersal communities). For the present study, epibenthos and demersal species were sampled using two different gears, a 3.5 m beam trawl and a Porcupine 39/52 type baca otter trawl respectively. The total species richness combining both samplers ascended to 221, including 71 species of fishes, 65 crustaceans, 35 molluscs, 29 echinoderms, 10 cnidarians and 5 sponges. Multivariate methods were used for the study of the characteristics of communities and habitats. Hierarchical cluster analysis was applied to calculate and visualize similarities between samples in terms of species composition. To assess the amount of variation of faunal densities related to a set of eight environmental variables, a redundancy analysis (RDA) was used. The set of environmental variables used were: depth, near-bottom temperature and salinity, sedimentary typology (dry weight percentages of coarse sands, medium and fine sands, silt and organic matter) and seafloor reflectivity. Using the spatial distribution of the ranges of depth and seafloor reflectivity that characterize the habitats of the faunal assemblages we defined the spatial distribution of the different communities. The multivariate analysis of 18 beam-trawl samples and 15 otter trawl samples showed the existence of 4 main assemblages associated with the more

  14. Demographic modeling of selected fish species with RAMAS

    SciTech Connect

    Saila, S.; Martin, B.; Ferson, S.; Ginzburg, L.; Millstein, J. )

    1991-03-01

    The microcomputer program RAMAS 3 developed for EPRI, has been used to model the intrinsic natural variability of seven important fish species: cod, Atlantic herring, yellowtail flounder, haddock, striped bass, American shad and white perch. Demographic data used to construct age-based population models included information on spawning biology, longevity, sex ratio and (age-specific) mortality and fecundity. These data were collected from published and unpublished sources. The natural risks of extinction and of falling below threshold population abundances (quasi-extinction) are derived for each of the seven fish species based on measured and estimated values for their demographic parameters. The analysis of these species provides evidence that including density-dependent compensation in the demographic model typically lowers the expected chance of extinction. This is because if density dependence generally acts as a restoring force it seems reasonable to conclude that models which include density dependence would exhibit less fluctuation than models without compensation since density-dependent populations experience a pull towards equilibrium. Since extinction probabilities are determined by the size of the fluctuation of population abundance, models without density dependence will show higher risks of extinction, given identical circumstances. Thus, models without compensation can be used as conservative estimators of risk, that is, if a compensation-free model yields acceptable extinction risk, adding compensation will not increase this risk. Since it is usually difficult to estimate the parameters needed for a model with compensation, such conservative estimates of the risks of extinction based on a model without compensation are very useful in the methodology of impact assessment. 103 refs., 19 figs., 10 tabs.

  15. Behaviour of fish by-catch in the mouth of a crustacean trawl.

    PubMed

    Queirolo, D; Gaete, E; Montenegro, I; Soriguer, M C; Erzini, K

    2012-06-01

    The behaviour of fish by-catch was recorded and characterized by in situ observations in the mouth of a crustacean trawl using an underwater camera system with artificial light, at depths between 106 and 461 m, along the central coast of Chile. The groups or species studied were rattails (family Macrouridae), Chilean hake Merluccius gayi gayi, sharks (orders Carcharhiniformes and Squaliformes), skates (family Rajidae), flatfishes (genus Hippoglossina) and small benthopelagic and demersal fishes (orders Osmeriformes, Stomiiformes, Gadiformes, Ophidiiformes and Perciformes). The fish behaviour was categorized in terms of (1) position in the water column, (2) initial orientation with respect to the trawl, (3) locomotion and (4) swimming speed with respect to the trawl. Rattails, sharks, skates and flatfishes were passive in response to the trawl and showed similar behavioural patterns, with most fishes observed sitting or touching the bottom with no swimming or other activity. Merluccius gayi gayi was the most active species, displaying a wide combination of behavioural responses when the trawl approached. This species showed several behavioural patterns, mainly characterized by swimming forward at variable speed. A fraction of small bentho-pelagic and demersal fishes also showed an active behaviour but always at lower speed than the trawl. The species-specific differences in behaviour in the mouth of the trawl suggest that improvements at the level of the footrope can be made to reduce by-catch, especially of passive species. PMID:22650431

  16. Fish is Fish: the use of experimental model species to reveal causes of skeletal diversity in evolution and disease

    PubMed Central

    Harris, M. P.; Henke, K.; Hawkins, M. B.; Witten, P. E.

    2014-01-01

    Summary Fishes are wonderfully diverse. This variety is a result of the ability of ray-finned fishes to adapt to a wide range of environments, and has made them more specious than the rest of vertebrates combined. With such diversity it is easy to dismiss comparisons between distantly related fishes in efforts to understand the biology of a particular fish species. However, shared ancestry and the conservation of developmental mechanisms, morphological features and physiology provide the ability to use comparative analyses between different organisms to understand mechanisms of development and physiology. The use of species that are amenable to experimental investigation provides tools to approach questions that would not be feasible in other ‘non-model’ organisms. For example, the use of small teleost fishes such as zebrafish and medaka has been powerful for analysis of gene function and mechanisms of disease in humans, including skeletal diseases. However, use of these fish to aid in understanding variation and disease in other fishes has been largely unexplored. This is especially evident in aquaculture research. Here we highlight the utility of these small laboratory fishes to study genetic and developmental factors that underlie skeletal malformations that occur under farming conditions. We highlight several areas in which model species can serve as a resource for identifying the causes of variation in economically important fish species as well as to assess strategies to alleviate the expression of the variant phenotypes in farmed fish. We focus on genetic causes of skeletal deformities in the zebrafish and medaka that closely resemble phenotypes observed both in farmed as well as natural populations of fishes. PMID:25221374

  17. Molecular identification, morphological characterization and new insights into the ecology of larval Pseudoterranova cattani in fishes from the Argentine coast with its differentiation from the Antarctic species, P. decipiens sp. E (Nematoda: Anisakidae).

    PubMed

    Timi, Juan T; Paoletti, Michela; Cimmaruta, Roberta; Lanfranchi, Ana L; Alarcos, Ana J; Garbin, Lucas; George-Nascimento, Mario; Rodríguez, Diego H; Giardino, Gisela V; Mattiucci, Simonetta

    2014-01-17

    . decipiens sp. E, indicating that larval forms can be distinguished based on their morphology. Pseudoterranova cattani is common and abundant in a variety of fish species from Chile, whereas few host species harbour these larvae in Argentina where they show low levels of parasitism. This pattern could arise from a combination of factors, including environmental conditions, density and dietary preferences of definitive hosts and life-cycle pathways of the parasite. Finally, this study revealed that the life-cycle of P. cattani involves mainly demersal and benthic organisms, with a marked preference by large-sized benthophagous fish. PMID:24161261

  18. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  19. 78 FR 18273 - Draft Guidance for Industry on Purchasing Reef Fish Species Associated With the Hazard of...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-26

    ... Reef Fish Species Associated With the Hazard of Ciguatera Fish Poisoning; Availability AGENCY: Food and...: Purchasing Reef Fish Species Associated With the Hazard of Ciguatera Fish Poisoning.'' The draft guidance, when finalized, will advise primary seafood processors who purchase reef fish how to minimize the...

  20. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  1. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  2. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  3. 9 CFR 83.3 - Interstate movement of live VHS-regulated fish species from VHS-regulated areas.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ...-regulated fish species from VHS-regulated areas. 83.3 Section 83.3 Animals and Animal Products ANIMAL AND...-regulated fish species from VHS-regulated areas. (a) Except as provided in paragraphs (b) through (e) of this section, live VHS-regulated fish, including fish moved to live fish markets, may only be...

  4. Pyrosequencing as a tool for rapid fish species identification and commercial fraud detection.

    PubMed

    De Battisti, Cristian; Marciano, Sabrina; Magnabosco, Cristian; Busato, Sara; Arcangeli, Giuseppe; Cattoli, Giovanni

    2014-01-01

    The increased consumption of fish products, as well as the occurrence of exotic fish species in the Mediterranean Sea and in the fish market, has increased the risk of commercial fraud. Furthermore, the great amount of processed seafood products has greatly limited the application of classic identification systems. DNA-based identification allows a clear and unambiguous detection of polymorphisms between species, permitting differentiation and identification of both commercial fraud and introduction of species with potential toxic effects on humans. In this study, a novel DNA-based approach for differentiation of fish species based on pyrosequencing technology has been developed. Raw and processed fish products were tested, and up to 25 species of fish belonging to Clupeiformes and Pleuronectiformes groups were uniquely and rapidly identified. The proper identification based on short and unique genetic sequence signatures demonstrates that this approach is promising and cost-effective for large-scale surveys. PMID:24350776

  5. Fish allergy in patients with parvalbumin-specific immunoglobulin E depends on parvalbumin content rather than molecular differences in the protein among fish species.

    PubMed

    Kobayashi, Ayako; Kobayashi, Yukihiro; Shiomi, Kazuo

    2016-10-01

    Allergenic characteristics of purified parvalbumins from different fish species have not been thoroughly investigated. We revealed that purified parvalbumins from nine different fish species have identical IgE-reactivities and high cross-reactivities. We also showed that fish allergenicity is associated with the parvalbumin content of the fish species, rather than species-specific differences in the molecular characteristics of the individual parvalbumin proteins. PMID:27251554

  6. 77 FR 23463 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-19

    ... Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric... Endangered Species Act section 10(a)(1)(A) permit to US Fish and Wildlife Service to collect Central Valley spring-run Chinook salmon eggs and juveniles from the Feather River Fish Hatchery to place into the...

  7. 76 FR 78242 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-16

    ... Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric... with section 10(a)(1)(A) of the ESA (16 U.S.C. 1531 et. seq) and regulations governing listed fish and... allow them to take all fish species covered in this notice while conducting research at Crims Island...

  8. Specific IgE to fish extracts does not predict allergy to specific species within an adult fish allergic population

    PubMed Central

    2014-01-01

    Background Fish is an important cause of food allergy. Studies on fish allergy are scarce and in most cases limited to serological evaluation. Our objective was to study patterns of self-reported allergy and tolerance to different commonly consumed fish species and its correlation to IgE sensitization to the same species. Methods Thirty-eight adult fish allergic patients completed a questionnaire regarding atopy, age of onset and symptoms to 13 commonly consumed fish species in the Netherlands (pangasius, cod, herring, eel, hake, pollock, mackerel, tilapia, salmon, sardine, tuna, plaice and swordfish). Specific IgE to these fish extracts were analyzed by ImmunoCAP. Results Median age of onset of fish allergy was 8.5 years. Severe reactions were reported by the majority of patients (n = 20 (53%) respiratory and of these 20 patients, 6 also had cardiovascular symptoms). After diagnosis, 66% of the patients had eliminated all fish from their diet. Allergy to all species ever tried was reported by 59%. In relation to species ever tried, cod (84%) and herring (79%) were the most frequently reported culprit species while hake (57%) and swordfish (55%) were the least frequent. A positive sIgE (value ≥ 0.35 kUA/L) to the culprit species ranged between 50% (swordfish) and 100% (hake). In tolerant patients, a negative sIgE (value < 0.35 kUA/L) ranged from 0% (hake, pollock and swordfish) to 75% (sardine). For cod, the agreement between sIgE test results and reported allergy or tolerance was 82% and 25%, respectively. Sensitization to cod parvalbumin (Gad c 1) was present in 77% of all patients. Conclusion Serological cross-reactivity between fish species is frequent, but in a significant proportion of patients, clinical relevance appears to be limited to only certain species. A well-taken history or food challenge is required for discrimination between allergy to the different fish species. PMID:25225608

  9. Myxidium leei (Myxozoa) infections in aquarium-reared Mediterranean fish species.

    PubMed

    Padrós, F; Palenzuela, O; Hispano, C; Tosas, O; Zarza, C; Crespo, S; Alvarez-Pellitero, P

    2001-10-29

    An episode of parasitic enteritis causing trickling mortalities at an exhibition aquarium reproducing Mediterranean ecosystems was found to be caused by the myxozoan parasite Myxidium leei Diamant, Lom & Dykova 1994. The myxozoan was recorded in 25 different fish species belonging to 16 Genera, 10 Families and 4 Orders. It was mainly detected in the intestine of affected fish, and was responsible for severe chronic enteritis. The parasite was probably introduced into the facilities with infected wild fish, and transmitted directly from fish to fish by cohabitation, transfer of infected material and necrophagia. Fish belonging to the Families Labridae and Blenniidae appeared as most susceptible, and the incidence of infections in members of the Sparidae was low. This study significantly widens the host spectrum for this virulent parasite and now includes many ubiquitous coastal Mediterranean species. Wild fish may have a significant role in the transmission of myxidiosis of cultured sparid fish. PMID:11797916

  10. Species List of Alaskan Birds, Mammals, Fish, Amphibians, Reptiles, and Invertebrates. Alaska Region Report Number 82.

    ERIC Educational Resources Information Center

    Taylor, Tamra Faris

    This publication contains a detailed list of the birds, mammals, fish, amphibians, reptiles, and invertebrates found in Alaska. Part I lists the species by geographical regions. Part II lists the species by the ecological regions of the state. (CO)

  11. SURROGATE SPECIES IN ASSESSING CONTAMINANT RISK FOR ENDANGERED FISHES, INCLUDING INTERSPECIES TOXICITY CORRELATIONS

    EPA Science Inventory

    Rainbow trout, fathead minnows, and sheepshead minnows were tested as surrogate species to assess contaminant risk for 17 endangered fishes and one toad species. Acute toxicity tests were conducted with carbaryl, copper, 4-nonylphenol, pentachlorophenol, and permethrin in accorda...

  12. LOCATIONAL DIFFERENCES IN MERCURY AND SELENIUM LEVELS IN 19 SPECIES OF SALTWATER FISH FROM NEW JERSEY

    PubMed Central

    Burger, Joanna; Jeitner, Christian; Gochfeld, Michael

    2014-01-01

    Individuals who fish, and their families that ingest self-caught fish, make decisions about where to fish, what type of fish to eat, and the quantity of fish to eat. While federal and state agencies often issue consumption advisories for some fish with high mercury (Hg) concentrations, advisories seldom provide the actual metal levels to the general public. There are few data for most saltwater fish, and even less information on variations in Hg levels in fish within a state or geographical region. The objective of this study was to provide Hg concentrations from 19 species of fish caught in different locations in New Jersey to (1) test the hypothesis that mean metal levels vary geographically, (2) provide this information to individuals who fish these coastal waters, and (3) provide a range of values for risk assessors who deal with saltwater fish exposure in the Northeastern United States. Selenium (Se) was also examined because of its purported moderating effect on the toxicity of Hg. Hg levels showed significant geographical variation for 10 of 14 species that were caught in more than one region of New Jersey, but there were significant locational differences for Se in only 5 of the fish. Mercury levels were significantly lower in fish collected from northern New Jersey (except for ling, Molva molva), compared to other regions. As might be expected, locational differences in Hg levels were greatest for fish species with the highest Hg concentrations (shark, Isurus oxyrinchus; tuna, Thunnus thynnus and T. albacares; striped bass, Morone saxatilis; bluefish, Pomatomus saltatrix). Fishers and their families might reduce their risk from Hg exposure not only by selecting fish generally lower in Hg, but by fishing predominantly in some regions over others, further lowering the potential risk. Health professionals might use these data to advise patients on which fish are safest to consume (in terms of Hg exposure) from particular geographical regions. PMID:21598171

  13. Locational differences in mercury and selenium levels in 19 species of saltwater fish from New Jersey.

    PubMed

    Burger, Joanna; Jeitner, Christian; Gochfeld, Michael

    2011-01-01

    Individuals who fish, and their families that ingest self-caught fish, make decisions about where to fish, what type of fish to eat, and the quantity of fish to eat. While federal and state agencies often issue consumption advisories for some fish with high mercury (Hg) concentrations, advisories seldom provide the actual metal levels to the general public. There are few data for most saltwater fish, and even less information on variations in Hg levels in fish within a state or geographical region. The objective of this study was to provide Hg concentrations from 19 species of fish caught in different locations in New Jersey to (1) test the hypothesis that mean metal levels vary geographically, (2) provide this information to individuals who fish these coastal waters, and (3) provide a range of values for risk assessors who deal with saltwater fish exposure in the Northeastern United States. Selenium (Se) was also examined because of its purported moderating effect on the toxicity of Hg. Hg levels showed significant geographical variation for 10 of 14 species that were caught in more than one region of New Jersey, but there were significant locational differences for Se in only 5 of the fish. Mercury levels were significantly lower in fish collected from northern New Jersey (except for ling, Molva molva), compared to other regions. As might be expected, locational differences in Hg levels were greatest for fish species with the highest Hg concentrations (shark, Isurus oxyrinchus; tuna, Thunnus thynnus and T. albacares; striped bass, Morone saxatilis; bluefish, Pomatomus saltatrix). Fishers and their families might reduce their risk from Hg exposure not only by selecting fish generally lower in Hg, but by fishing predominantly in some regions over others, further lowering the potential risk. Health professionals might use these data to advise patients on which fish are safest to consume (in terms of Hg exposure) from particular geographical regions. PMID:21598171

  14. Quantification of major allergen parvalbumin in 22 species of fish by SDS-PAGE.

    PubMed

    Kobayashi, Yukihiro; Yang, Tao; Yu, Cheng-Tao; Ume, Chiaki; Kubota, Hiroyuki; Shimakura, Kuniyoshi; Shiomi, Kazuo; Hamada-Sato, Naoko

    2016-03-01

    Fish is an important causative material of food allergy. Although the allergenicity of fish is considered to correlate with the content of parvalbumin, the major fish allergen, available information about the parvalbumin content in fish is limited. In this study, a simple and reliable quantification method for fish parvalbumin by SDS-PAGE was first established. Application of the SDS-PAGE method to 22 species of fish revealed a marked variation in parvalbumin content among fish. Furthermore, the parvalbumin content was found to be higher in dorsal white muscle than in ventral white muscle, in rostral part of white muscle than in caudal part of white muscle and in white muscle than in dark muscle. IgE reactivity of fish was roughly proportional to parvalbumin content. Interestingly, large-sized migratory fish, such as salmon, swordfish and tuna, were commonly very low in both parvalbumin content and IgE reactivity. PMID:26471564

  15. Abundances of Demersal Sharks and Chimaera from 1994-2009 Scientific Surveys in the Central Mediterranean Sea

    PubMed Central

    Ragonese, Sergio; Vitale, Sergio; Dimech, Mark; Mazzola, Salvatore

    2013-01-01

    Bibliographic and data gathered in scientific bottom trawl surveys carried out off the Southern Coasts of Sicily (Mediterranean Sea), from 1994 to 2009 and between a depth of 10 and 800 m, were analysed in order to prepare a checklist of demersal sharks and chimaera, which are species sensitive to fisheries exploitation. Out of the 27 previously reported demersal shark and chimaera taxa in the Mediterranean, only 23 were found in literature and 20 sampled during the surveys in the investigated area. Among the species sampled in the surveys, only 2 ubiquitous (Squalusblainville and Scyliorhinuscanicula) and 3 deep-water (Chimaeramonstrosa, Centrophorusgranulosus and Galeusmelastomus) species showed a wide geographical distribution with a consistent abundance. Excluding the rare (such as Oxynotuscentrina) or uncommon shark (e.g. Squalusacanthias), the estimated frequencies of occurrence and abundance indexes show a possible risk of local extinction for the almost exclusively (e.g. angelshark, Squatina spp.) or preferential (e.g. Scyliorhinusstellaris) neritic species. PMID:24086386

  16. Conditions for coexistence of freshwater mussel species via partitioning of fish host resources

    USGS Publications Warehouse

    Rashleigh, B.; DeAngelis, D.L.

    2007-01-01

    Riverine freshwater mussel species can be found in highly diverse communities where many similar species coexist. Mussel species potentially compete for food and space as adults, and for fish host resources during the larval (glochidial) stage. Resource partitioning at the larval stage may promote coexistence. A model of resource utilization was developed for two mussel species and analyzed to determine conditions for coexistence. Mussel species were predicted to coexist when they differed in terms of their success in contacting different fish host species; very similar strategies offered limited possibilities for coexistence. Differences in the mussel species' maximum infestation loads on the fish hosts that coincided with differences in their fish host contact success promoted coexistence. Mussel species with a given set of trade-offs in fish host use were predicted to coexist only for a subset of relative fish host abundances, so a shift in relative fish host abundances could result in the loss of a mussel species. An understanding of the conditions for freshwater mussel species coexistence can help explain high mussel diversity in rivers and guide ongoing conservation activities. ?? 2006 Elsevier B.V. All rights reserved.

  17. [Preparation and analysis of dehydrated mixtures of vegetables and underutilized fish species flours: I. Dehydrated mixtures of cereal-fish].

    PubMed

    Luna, G; Rey, J L; Castro, L M; Corona, N; Ferreiros, E; Luzardo, M

    1990-09-01

    For the purpose of providing possible solutions to the malnutrition problems affecting those populations where cereals and tubers form an important portion of their daily intake, products were prepared from dehydrated mixtures of cereals and under-utilized fish, but which contain high-quality protein. Two cereals were selected for our experiments: rice and corn, and a marine under-utilized fish species (Macrodon ancyclodon). The minced fish muscle recovered by mechanical deboning was mixed with the cereal, obtaining mixtures with 5%, 10% and 15% fish on a dry basis. Feeding experiments using Wistar weaning rats were then carried out to evaluate the most important characteristics. An amino acid profile which reflected high-quality protein was obtained, as evidenced by the excellent PER, NPU, NPR and digestibility values determined. The dehydrated mixtures of fish/cereal flour prepared with 5% and up to 10% fish (dry basis), did not present any odour, but as of the 15% level, fish odour was perceived. Therefore, the use of dehydrated mixtures of fish/cereal flours with up to 10% fish in preparing food products, is recommended, since these would be of great help in solving the scarcity of good-quality protein, particularly in the developing countries. PMID:2134143

  18. A Mixed-Method Approach for Quantifying Illegal Fishing and Its Impact on an Endangered Fish Species.

    PubMed

    Free, Christopher M; Jensen, Olaf P; Mendsaikhan, Bud

    2015-01-01

    Illegal harvest is recognized as a widespread problem in natural resource management. The use of multiple methods for quantifying illegal harvest has been widely recommended yet infrequently applied. We used a mixed-method approach to evaluate the extent, character, and motivations of illegal gillnet fishing in Lake Hovsgol National Park, Mongolia and its impact on the lake's fish populations, especially that of the endangered endemic Hovsgol grayling (Thymallus nigrescens). Surveys for derelict fishing gear indicate that gillnet fishing is widespread and increasing and that fishers generally use 3-4 cm mesh gillnet. Interviews with resident herders and park rangers suggest that many residents fish for subsistence during the spring grayling spawning migration and that some residents fish commercially year-round. Interviewed herders and rangers generally agree that fish population sizes are decreasing but are divided on the causes and solutions. Biological monitoring indicates that the gillnet mesh sizes used by fishers efficiently target Hovsgol grayling. Of the five species sampled in the monitoring program, only burbot (Lota lota) showed a significant decrease in population abundance from 2009-2013. However, grayling, burbot, and roach (Rutilus rutilus) all showed significant declines in average body size, suggesting a negative fishing impact. Data-poor stock assessment methods suggest that the fishing effort equivalent to each resident family fishing 50-m of gillnet 11-15 nights per year would be sufficient to overexploit the grayling population. Results from the derelict fishing gear survey and interviews suggest that this level of effort is not implausible. Overall, we demonstrate the ability for a mixed-method approach to effectively describe an illegal fishery and suggest that these methods be used to assess illegal fishing and its impacts in other protected areas. PMID:26625154

  19. A Mixed-Method Approach for Quantifying Illegal Fishing and Its Impact on an Endangered Fish Species

    PubMed Central

    Free, Christopher M.; Jensen, Olaf P.; Mendsaikhan, Bud

    2015-01-01

    Illegal harvest is recognized as a widespread problem in natural resource management. The use of multiple methods for quantifying illegal harvest has been widely recommended yet infrequently applied. We used a mixed-method approach to evaluate the extent, character, and motivations of illegal gillnet fishing in Lake Hovsgol National Park, Mongolia and its impact on the lake’s fish populations, especially that of the endangered endemic Hovsgol grayling (Thymallus nigrescens). Surveys for derelict fishing gear indicate that gillnet fishing is widespread and increasing and that fishers generally use 3–4 cm mesh gillnet. Interviews with resident herders and park rangers suggest that many residents fish for subsistence during the spring grayling spawning migration and that some residents fish commercially year-round. Interviewed herders and rangers generally agree that fish population sizes are decreasing but are divided on the causes and solutions. Biological monitoring indicates that the gillnet mesh sizes used by fishers efficiently target Hovsgol grayling. Of the five species sampled in the monitoring program, only burbot (Lota lota) showed a significant decrease in population abundance from 2009–2013. However, grayling, burbot, and roach (Rutilus rutilus) all showed significant declines in average body size, suggesting a negative fishing impact. Data-poor stock assessment methods suggest that the fishing effort equivalent to each resident family fishing 50-m of gillnet 11–15 nights per year would be sufficient to overexploit the grayling population. Results from the derelict fishing gear survey and interviews suggest that this level of effort is not implausible. Overall, we demonstrate the ability for a mixed-method approach to effectively describe an illegal fishery and suggest that these methods be used to assess illegal fishing and its impacts in other protected areas. PMID:26625154

  20. Target fishes on artificial reefs: evidences of impacts over nearby natural environments.

    PubMed

    Simon, Thiony; Pinheiro, Hudson Tercio; Joyeux, Jean-Christophe

    2011-10-01

    Topics in artificial reef research have included a wide number of themes but a major portion of published works are about the attraction that artificial reefs exert over fishes that reside in natural reefs. In the present work, underwater visual censuses of fishes were conducted at both artificial and natural reefs, aiming at verifying whether fishes are attracted or and produced on artificial reefs. Length frequency, mean biomass and frequency of occurrence of four fish genera targeted by local fisheries (Caranx, Haemulon, Lutjanus and Mycteroperca) were compared between two artificial and two natural reefs. Evidences of both production and attraction of target reef fishes by artificial reefs were found. Production is evidenced by the enormous abundance of recruits of a single grunt species, the tomtate (Haemulon aurolineatum Cuvier). The high concentration of adults of predator demersal fishes (Mycteroperca spp. and Lutjanus spp.), present at low density on natural reefs, is the main evidence for attraction by artificial reefs. Results are inconclusive for the pelagic predators Caranx spp. The attraction that artificial reefs exert over large demersal predators can negatively affect nearby natural areas through shifts in predation, competition or nutrient input. Production can affect benthic communities in soft bottoms adjacent to artificial reefs by foraging of reef-associated fishes. Even when unplanned for fisheries purposes artificial reefs are often submitted to commercial and recreational fisheries and, due to the strong attraction they exert over large predators, these structures need harvest regulations. PMID:21871652

  1. Seasonal variation of assemblage and feeding guild structure of fish species in a boreal tidal basin

    NASA Astrophysics Data System (ADS)

    Kellnreitner, Florian; Pockberger, Moritz; Asmus, Harald

    2012-08-01

    Species composition, abundance, feeding relationships and guild structure of the fish assemblage in the Sylt-Rømø bight, a tidal basin in the northern Wadden Sea, were investigated to show seasonal differences and the importance of functional groups in this area. The tidal flats and in shallow subtidal areas were sampled using a beach seine and a bottom trawl net was used for deeper subtidal areas and tidal gullies. Species richness of fish was highest in summer where 26 species were caught, while the lowest richness was recorded in winter (17 species). Clear differences in species richness and abundance were found between shallow areas and deeper parts of the bight. Clupea harengus and Ammodytes tobianus were the most abundant species in deeper areas, while Pomatoschistus microps and Pomatoschistus minutus dominated shallower waters. Gut contents of 27 fish species were identified and the guild structure analyzed by UPGMA clustering of niche overlaps. Calanoid copepods (19.9%), Crangon crangon (18.2%) and mysid shrimps (8.4%) were the most abundant prey items of all fish species combined. Seven feeding guilds were present in the fall and winter, and eight and six in spring and summer, respectively. Fish feeding on calanoid copepods and C. crangon were present year round, whereas the occurrence of other guilds varied between seasons. Species composition of prey changed through seasons and, for some fish species, even the feeding mode itself varied with season. Most noticeable, 11 fish species changed guilds between seasons. We found a convergence in summer towards abundant prey items, whereas in winter diet overlap was lower. This is the first investigation of guild structure of almost all fish species present in a Wadden Sea area, and shows that consideration of seasonal differences is essential when determining feeding relationships of fish in temperate areas.

  2. Survey of parasitic fauna of different ornamental freshwater fish species in Iran.

    PubMed

    Adel, Milad; Ghasempour, Fatemeh; Azizi, Hamid Reza; Shateri, Mohamad Hadi; Safian, Ahmad Reza

    2015-01-01

    Parasitic diseases are harmful and limiting factors in breeding and rearing ornamental fish industry. In this study, 400 apparently healthy ornamental fishes from five species (each species 80 specimens) including: Goldfish (Carassius auratus), guppy (Poecilia reticulate), angelfish (Pterophyllum scalare), discus (Symphsodon discus) and sailfin mollies (Poecilia latipinna) was obtained from a local ornamental fish farm in the north of Iran during 2011 to 2012. The primary purpose of this study was to determine the parasitic infections of aquarium fish in Iran. For this purpose, fish were first examined for ectoparasites using wet mount under a light microscope. Then, the alimentary ducts of fish were observed under light and stereo microscope. In survey of different infection rates for different parasitic infections in examining fish: Dactylogyrus sp., Gyrodactylus sp., Ichthyophthirius multifiliis Trichodina reticulata, Capillaria sp. and Lernaea cyprinacea were collected from five species. All five fish species had Monogenea (Gyrodactylidae and Dactylogyridae) in their skins and gills, the highest prevalence was observed in C. auratus and the lowest was in P. scalare and S. discus. Also, Capillaria sp. was reported as a first record from the abdominal cavity of P. scalare in Iran. Our findings revealed that the protozoal infections are very common among aquarium fishes. Although, no gross pathology was observed among infected fishes, but it is likely that in case of any changes in the environment, then parasitic infections could be harmful. PMID:25992255

  3. Species- and tissue-specific mercury bioaccumulation in five fish species from Laizhou Bay in the Bohai Sea of China

    NASA Astrophysics Data System (ADS)

    Liu, Jinhu; Cao, Liang; Huang, Wei; Dou, Shuozeng

    2013-05-01

    Mercury (Hg) concentrations in the tissues (muscle, stomach, liver, gills, skin, and gonads) of five fish species (mullet Liza ha em atocheil us, flathead fish Platycephalus indicus, sea bass Lateolabrax japonic u s, mackerel Scomberomorus niphonius and silver pomfret Pampus argenteus) collected from Laizhou Bay in the Bohai Sea of China were investigated. The results indicate that Hg bioaccumulation in the five fish was tissue-specific, with the highest levels in the muscle and liver, followed by the stomach and gonads. The lowest levels were found in the gills and skin. Fish at higher trophic levels (flathead fish and sea bass) exhibited higher Hg concentrations than consumers at lower trophic levels. Mercury bioaccumulation tended to be positively correlated with fish length in mullet, silver pomfret, mackerel, and flathead fish, but was negatively correlated with fish length in sea bass. The Hg concentrations in the muscles of all fish species in Laizhou Bay were within the permissible limits of food safety set by national and international criteria. However, the suggesting maximum consumption of sea bass is 263 g per week for human health.

  4. Comparative toxicity of 3-trifluormethyl-4-nitrophenol (TFM) to larval lampreys and eleven species of fishes

    USGS Publications Warehouse

    Applegate, Vernon C.; King, Everett L.

    1962-01-01

    The tolerances of larval lampreys, rainbow trout, and 10 species of warmwater fishes to 3-trifluormethyl-4-nitrophenol (TFM), a selective lamprey larvicide, were determined in three dilution waters of different physical and chemical characteristics. Differential toxic effects of the chemical to larval lampreys and test fishes varied broadly with the species of fish. Smallmouth bass and other centrarchids were most tolerant of the chemical; walleye, yellow perch, bullheads, and white suckers were most susceptible. The toxicity of TFM to both lampreys and fishes diminished as the conductivity and alkalinity of the dilution water increased. The differential action of the chemical was retained in all waters, however.

  5. Fish status survey of Nordic lakes: effects of acidification, eutrophication and stocking activity on present fish species composition.

    PubMed

    Tammi, Jouni; Appelberg, Magnus; Beier, Ulrika; Hesthagen, Trygve; Lappalainen, Antti; Rask, Martti

    2003-03-01

    The status of fish populations in 3821 lakes in Norway, Sweden and Finland was assessed in 1995-1997. The survey lakes were chosen by stratified random sampling from all (126 482) Fennoscandian lakes > or = 0.04 km2. The water chemistry of the lakes was analyzed and information on fish status was obtained by a postal inquiry. Fish population losses were most frequent in the most highly acidified region of southern Norway and least common in eastern Fennoscandia. According to the inquiry results, the number of lost stocks of brown trout (Salmo trutta), roach (Rutilus rutilus), Arctic char (Salvelinus alpinus) and perch (Perca fluviatilis) was estimated to exceed 10000. The number of stocks of these species potentially affected by the low alkalinity of lake water was estimated to exceed 11000. About 3300 lakes showed high total phosphorus (> 25 microg L(-1)) and cyprinid dominance in eastern Fennoscandia, notably southwestern Finland. This survey did not reveal any extinction of fish species due to eutrophication. One-third of the lakes had been artificially stocked with at least one new species, most often brown trout, whitefish (Coregonus lavaretus s.l.), Arctic char, rainbow trout (Oncorhynchus mykiss), pike-perch (Stizostedion lucioperca), grayling (Thymallus thymallus), pike (Esox lucius), bream (Abramis brama), tench (Tinca tinca) and European minnow (Phoxinus phoxinus). The number of artificially manipulated stocks of these species in Fennoscandian lakes was estimated to exceed 52000. Hence, the number of fish species occurring in Nordic lakes has recently been changed more by stockings than by losses of fish species through environmental changes such as acidification. PMID:12733793

  6. Comparative visual ecophysiology of mid-Atlantic temperate reef fishes

    PubMed Central

    Horodysky, Andrij Z.; Brill, Richard W.; Crawford, Kendyl C.; Seagroves, Elizabeth S.; Johnson, Andrea K.

    2013-01-01

    Summary The absolute light sensitivities, temporal properties, and spectral sensitivities of the visual systems of three mid-Atlantic temperate reef fishes (Atlantic spadefish [Ephippidae: Chaetodipterus faber], tautog [Labridae: Tautoga onitis], and black sea bass [Serranidae: Centropristis striata]) were studied via electroretinography (ERG). Pelagic Atlantic spadefish exhibited higher temporal resolution but a narrower dynamic range than the two more demersal foragers. The higher luminous sensitivities of tautog and black sea bass were similar to other benthic and demersal coastal mid-Atlantic fishes. Flicker fusion frequency experiments revealed significant interspecific differences at maximum intensities that correlated with lifestyle and habitat. Spectral responses of the three species spanned 400–610 nm, with high likelihood of cone dichromacy providing the basis for color and contrast discrimination. Significant day-night differences in spectral responses were evident in spadefish and black sea bass but not tautog, a labrid with characteristic structure-associated nocturnal torpor. Atlantic spadefish responded to a wider range of wavelengths than did deeper-dwelling tautog or black sea bass. Collectively, these results suggest that temperate reef-associated fishes are well-adapted to their gradient of brighter to dimmer photoclimates, representative of their unique ecologies and life histories. Continuing anthropogenic degradation of water quality in coastal environments, at a pace faster than the evolution of visual systems, may however impede visual foraging and reproductive signaling in temperate reef fishes. PMID:24285711

  7. Accumulation features of arsenic species in various fishes collected from coastal cities in Korea

    NASA Astrophysics Data System (ADS)

    Choi, Sung-Deuk; Son, Hee-Sik; Choi, Minkyu; Park, Min-Kyu

    2015-12-01

    In this study, 36 fish species were collected from three coastal cities in Korea to investigate levels and patterns of six arsenicals (arsenite: As (III), arsenate: As (V), arsenocholine: AsC, arsenobetaine: AsB, monomethylarsonic acid: MMA, and dimethylarsinic acid: DMA). The levels of ∑6 As in the different fish species varied substantially, ranging from 0.02 μg As/g ww (Islaeli carp) to 9.65 μg As/g ww (Skate ray) with a median of 0.40 μg As/g ww. All the arsenicals in marine fishes showed higher levels than those in freshwater fishes due to fish feed living in saline water. Overall, marine carnivorous fishes seem to be more contaminated with arsenic. For all the fish samples, AsB (mean fraction: 90.6%) was dominant among the six arsenicals, indicating biomethylation of inorganic arsenic and accumulation of AsB. Fish species with high water contents showed elevated levels of As (III), but there was no further significant correlations between arsenicals and water/lipid contents. Concentrations of As (V) were significantly lower than those of As (III), which implies that As (V) is reduced during biomethylation of inorganic arsenic. Consequently, we hypothesize that the toxicity of arsenic (mainly derived from As (III)) can be increased by the reduction of As (V), especially for the fish species with higher water contents.

  8. Stable Isotope and Signature Fatty Acid Analyses Suggest Reef Manta Rays Feed on Demersal Zooplankton

    PubMed Central

    Couturier, Lydie I. E.; Rohner, Christoph A.; Richardson, Anthony J.; Marshall, Andrea D.; Jaine, Fabrice R. A.; Bennett, Michael B.; Townsend, Kathy A.; Weeks, Scarla J.; Nichols, Peter D.

    2013-01-01

    Assessing the trophic role and interaction of an animal is key to understanding its general ecology and dynamics. Conventional techniques used to elucidate diet, such as stomach content analysis, are not suitable for large threatened marine species. Non-lethal sampling combined with biochemical methods provides a practical alternative for investigating the feeding ecology of these species. Stable isotope and signature fatty acid analyses of muscle tissue were used for the first time to examine assimilated diet of the reef manta ray Manta alfredi, and were compared with different zooplankton functional groups (i.e. near-surface zooplankton collected during manta ray feeding events and non-feeding periods, epipelagic zooplankton, demersal zooplankton and several different zooplankton taxa). Stable isotope δ15N values confirmed that the reef manta ray is a secondary consumer. This species had relatively high levels of docosahexaenoic acid (DHA) indicating a flagellate-based food source in the diet, which likely reflects feeding on DHA-rich near-surface and epipelagic zooplankton. However, high levels of ω6 polyunsaturated fatty acids and slightly enriched δ13C values in reef manta ray tissue suggest that they do not feed solely on pelagic zooplankton, but rather obtain part of their diet from another origin. The closest match was with demersal zooplankton, suggesting it is an important component of the reef manta ray diet. The ability to feed on demersal zooplankton is likely linked to the horizontal and vertical movement patterns of this giant planktivore. These new insights into the habitat use and feeding ecology of the reef manta ray will assist in the effective evaluation of its conservation needs. PMID:24167562

  9. Matching genetics with oceanography: directional gene flow in a Mediterranean fish species.

    PubMed

    Schunter, C; Carreras-Carbonell, J; Macpherson, E; Tintoré, J; Vidal-Vijande, E; Pascual, A; Guidetti, P; Pascual, M

    2011-12-01

    Genetic connectivity and geographic fragmentation are two opposing mechanisms determining the population structure of species. While the first homogenizes the genetic background across populations the second one allows their differentiation. Therefore, knowledge of processes affecting dispersal of marine organisms is crucial to understand their genetic distribution patterns and for the effective management of their populations. In this study, we use genetic analyses of eleven microsatellites in combination with oceanographic satellite and dispersal simulation data to determine distribution patterns for Serranus cabrilla, a ubiquitous demersal broadcast spawner, in the Mediterranean Sea. Pairwise population F(ST) values ranged between -0.003 and 0.135. Two genetically distinct clusters were identified, with a clear division located between the oceanographic discontinuities at the Ibiza Channel (IC) and the Almeria-Oran Front (AOF), revealing an admixed population in between. The Balearic Front (BF) also appeared to dictate population structure. Directional gene flow on the Spanish coast was observed as S. cabrilla dispersed from west to east over the AOF, from north to south on the IC and from south of the IC towards the Balearic Islands. Correlations between genetic and oceanographic data were highly significant. Seasonal changes in current patterns and the relationship between ocean circulation patterns and spawning season may also play an important role in population structure around oceanographic fronts. PMID:22097887

  10. Species-specific preferences of German recreational anglers for freshwater fishing experiences, with emphasis on the intrinsic utilities of fish stocking and wild fishes.

    PubMed

    Arlinghaus, R; Beardmore, B; Riepe, C; Meyerhoff, J; Pagel, T

    2014-12-01

    To answer the question, whether anglers have an intrinsic preference for stocking or a preference for catch outcomes (e.g. catch rates) believed to be maintained by stocking, a discrete choice experiment was conducted among a sample of anglers (n = 1335) in Lower Saxony, Germany. After controlling for catch aspects of the fishing experience, no significant influence of two stocking attributes (stocking frequency and composition of the catch in terms of wild v. hatchery fishes) on the utility gained from fishing was found for any of the freshwater species that were studied. It was concluded that the previously documented large appreciation of fish stocking by anglers may be indicative of an underlying preference for sufficiently high catches rather than reflect an intrinsic preference for stocking or the catching of wild fishes per se. PMID:25469949

  11. Does pH affect fish species richness when lake area is considered?

    USGS Publications Warehouse

    Rago, P.J.; Wiener, J.G.

    1986-01-01

    Numerous surveys have shown that fish species richness (number of species) is positively correlated with lake pH. However, species richness of fish communities is also correlated with lake size, and low-pH lakes are often small. Thus, conclusions drawn from examination of fish community structure relative to spatial (among- lake) variation in pH have been limited by uncertainties regarding the confounded effects of lake area. The authors used two statistical methods, analysis of covariance and a nonparametric blocked comparison test, to remove effects of lake area and compare fish species richness in low-pH and high-pH lakes. Data from six previous surveys of water chemistry and fish communities in lakes of Ontario and northern Wisconsin were examined. Lakes with low pH ( less than or equal to 6.0) contained significantly fewer fish species than lakes with high pH (> 6.0) when the effect of lake area was considered. A simple probabilistic model showed that the ability to detect differences in species richness is low when lake areas and the pool of potential colonizing species are small. The authors recommend the blocked comparison test for separating the effects of lake area and pH on species richness.

  12. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2010 CFR

    2010-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  13. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2011 CFR

    2011-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  14. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2013 CFR

    2013-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  15. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2012 CFR

    2012-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  16. 9 CFR 93.911 - Ports designated for the importation of live VHS-regulated fish species.

    Code of Federal Regulations, 2014 CFR

    2014-01-01

    ... of live VHS-regulated fish species. 93.911 Section 93.911 Animals and Animal Products ANIMAL AND... (INCLUDING POULTRY) AND ANIMAL PRODUCTS IMPORTATION OF CERTAIN ANIMALS, BIRDS, FISH, AND POULTRY, AND CERTAIN... Animal Species General Provisions for Vhs-Regulated Fish Species § 93.911 Ports designated for...

  17. Concentrations of microcystins in tissues of several fish species from freshwater reservoirs and ponds.

    PubMed

    Kopp, Radovan; Palíková, Miroslava; Adamovský, Ondřej; Ziková, Andrea; Navrátil, Stanislav; Kohoutek, Jiří; Mareš, Jan; Bláha, Luděk

    2013-12-01

    The aim of this study is to summarise the determination of concentrations of microcystins (MCs) in muscle and liver of freshwater fish species caught in stagnant waters of the Czech Republic. Within the years 2007-2009, 351 muscle samples and 291 liver samples of 16 freshwater fish species derived from four fishponds, and four water reservoirs were analysed. MCs were detected in 53 liver samples. The highest concentrations of microcystins were determined in liver samples of carnivorous fish species; 50.3 ng/g of fresh weight (FW) in perch (Perca fluviatilis) and 22.7 ng/g FW in pikeperch (Sander lucioperca). MCs in liver were detected in other five fish species; asp (Aspius aspius), pike (Esox lucius), common carp (Cyprinus carpio), grass carp (Ctenopharyngodon idella) and European eel (Anguilla anguilla). Concentrations of MCs in liver of nine fish species (European bream, whitefish, tench, silver carp, European catfish, roach, chub, crucian carp and rudd) were below the detection limit of 1.2-5.4 ng/g FW for different MC congeners. However, the concentrations of MCs in all muscle samples were below the detection limit. The assessment of MCs concentrations might be influenced by the detection method used. Due to the concentrations of MCs being below the detection limit in muscle samples of all fish species analysed, it seems that there might be a low potential threat for human health in case of fish muscle consumption. PMID:23756815

  18. Temporal comparison and predictors of fish species abundance and richness on undisturbed coral reef patches

    PubMed Central

    Wismer, Sharon; Bshary, Redouan

    2015-01-01

    Large disturbances can cause rapid degradation of coral reef communities, but what baseline changes in species assemblages occur on undisturbed reefs through time? We surveyed live coral cover, reef fish abundance and fish species richness in 1997 and again in 2007 on 47 fringing patch reefs of varying size and depth at Mersa Bareika, Ras Mohammed National Park, Egypt. No major human or natural disturbance event occurred between these two survey periods in this remote protected area. In the absence of large disturbances, we found that live coral cover, reef fish abundance and fish species richness did not differ in 1997 compared to 2007. Fish abundance and species richness on patches was largely related to the presence of shelters (caves and/or holes), live coral cover and patch size (volume). The presence of the ectoparasite-eating cleaner wrasse, Labroides dimidiatus, was also positively related to fish species richness. Our results underscore the importance of physical reef characteristics, such as patch size and shelter availability, in addition to biotic characteristics, such as live coral cover and cleaner wrasse abundance, in supporting reef fish species richness and abundance through time in a relatively undisturbed and understudied region. PMID:26644988

  19. Temporal comparison and predictors of fish species abundance and richness on undisturbed coral reef patches.

    PubMed

    Wagner, Elena L E S; Roche, Dominique G; Binning, Sandra A; Wismer, Sharon; Bshary, Redouan

    2015-01-01

    Large disturbances can cause rapid degradation of coral reef communities, but what baseline changes in species assemblages occur on undisturbed reefs through time? We surveyed live coral cover, reef fish abundance and fish species richness in 1997 and again in 2007 on 47 fringing patch reefs of varying size and depth at Mersa Bareika, Ras Mohammed National Park, Egypt. No major human or natural disturbance event occurred between these two survey periods in this remote protected area. In the absence of large disturbances, we found that live coral cover, reef fish abundance and fish species richness did not differ in 1997 compared to 2007. Fish abundance and species richness on patches was largely related to the presence of shelters (caves and/or holes), live coral cover and patch size (volume). The presence of the ectoparasite-eating cleaner wrasse, Labroides dimidiatus, was also positively related to fish species richness. Our results underscore the importance of physical reef characteristics, such as patch size and shelter availability, in addition to biotic characteristics, such as live coral cover and cleaner wrasse abundance, in supporting reef fish species richness and abundance through time in a relatively undisturbed and understudied region. PMID:26644988

  20. Predators reduce abundance and species richness of coral reef fish recruits via non-selective predation

    NASA Astrophysics Data System (ADS)

    Heinlein, J. M.; Stier, A. C.; Steele, M. A.

    2010-06-01

    Predators have important effects on coral reef fish populations, but their effects on community structure have only recently been investigated and are not yet well understood. Here, the effect of predation on the diversity and abundance of young coral reef fishes was experimentally examined in Moorea, French Polynesia. Effects of predators were quantified by monitoring recruitment of fishes onto standardized patch reefs in predator-exclosure cages or uncaged reefs. At the end of the 54-day experiment, recruits were 74% less abundant on reefs exposed to predators than on caged ones, and species richness was 42% lower on reefs exposed to predators. Effects of predators varied somewhat among families, however, rarefaction analysis indicated that predators foraged non-selectively among species. These results indicate that predation can alter diversity of reef fish communities by indiscriminately reducing the abundance of fishes soon after settlement, thereby reducing the number of species present on reefs.

  1. Seasonal diet shifts of seven fish species in an Atlantic rainforest stream in Southeastern Brazil.

    PubMed

    Deus, C P; Petrere-Junior, M

    2003-11-01

    We analyzed the stomach contents of 116 individuals belonging to seven fishes species in order to investigate seasonal changes in feeding strategy and how trophic interactions between species affect community structure in an Atlantic rainforest stream in Southeastern Brazil. Oligosarcus hepsetus and Pimelodus sp. consumed fewer items during the winter. Phalloceros caudimaculatus switched feeding habits from detritus during summer to algae during winter. These examples are related to variations in food availability and species feeding selectivity. The highest diet overlap values, for most species, as measured using Schoener's index, were observed in summer, along with a species tendency to be more generalist. Feeding pattern variation may influence the fish community structure. PMID:15029369

  2. Gnathostoma infection in fish caught for local consumption in Nakhon Nayok Province, Thailand I. Prevalence and fish species.

    PubMed

    Rojekittikhun, Wichit; Chaiyasith, Tossapon; Nuamtanong, Supaporn; Komalamisra, Chalit

    2004-09-01

    Between August 2000 and August 2001, 12,216 fish of 73 species were purchased from several local markets in Nakhon Nayok Province, Thailand, and examined for the presence of Gnathostoma larvae. Almost all species were fresh-water fish that had grown naturally, rather than raised commercially. Eight species were found to be infected with gnathostome larvae. The overall prevalence was 5.1% (626/12,216) and a total of 5,969 larvae was recovered. The highest rate of infection (30.1 %) was found in Monopterus albus (swamp eel). The rates in the remaining infected fish were as follows: Anabas testudineus (climbing perch) 7.7%, Channa striata (striped snake-head fish) 7.4%, Clarius macrocephalus (Gunther's walking catfish) 6.7%, Channa micropeltes (giant snake-head fish) 5.1%, Channa lucius (blotched snake-head fish) 4.0%, Clarius batrachus (Batrachian walking catfish) 1.4%, and Ompok krattensis (butter sheatfish) 0.6%. The mean number of larvae/fish was highest in swamp eels (10.0 larvae/eel), and the maximum number of 698 larvae was recovered from one eel. The body sizes of the recovered G. spinigerum advanced third-stage larvae were 2.70-5.10 mm in length (average, 3.97+/-0.50 mm) and 0.29-0.60 mm in width (average, 0.40+/-0.04 mm). The average number of cephalic hooklets of the larvae from rows 1 to 4 were 41.8+/-0.5 (range, 40-43), 43.6+/-0.6 (range, 42-45), 46.1+/-0.9 (range, 44-48) and 49.3+/-0.7 (range, 48-51), respectively. PMID:15689060

  3. Species succession and sustainability of the Great Lakes fish community

    USGS Publications Warehouse

    Eshenroder, Randy L.; Burnham-Curtis, Mary K.

    1999-01-01

    This article concentrates on the sustainability of the offshore pelagic and deepwater fish communities that were historically dominated by lake trout (Salvelinus namaycush). The causes of alteration in these fish communities (i.e., overfishing, introductions, and cultural eutrophication) were identified by Loftus and Regier (1972). Here we look at the ecology of these altered communities in relation to sustainability and discuss the need for restoration.

  4. Influence of food availability on the spatial distribution of juvenile fish within soft sediment nursery habitats

    NASA Astrophysics Data System (ADS)

    Tableau, A.; Brind'Amour, A.; Woillez, M.; Le Bris, H.

    2016-05-01

    Soft sediments in coastal shallow waters constitute nursery habitats for juveniles of several flatfishes. The quality of a nursery is defined by its capacity to optimize the growth and the survival of juvenile fish. The influence of biotic factors, such as food availability, is poorly studied at the scale of a nursery ground. Whether food availability limits juvenile survival is still uncertain. A spatial approach is used to understand the influence of food availability on the distribution of juvenile fish of various benthic and demersal species in the Bay of Vilaine (France), a productive nursery ground. We quantified the spatial overlap between benthic macro-invertebrates and their predators (juvenile fish) to assess if the latter were spatially covering the most productive areas of the Bay. Three scenarios describing the shapes of the predator-prey spatial relationship were tested to quantify the strength of the relationship and consequently the importance of food availability in determining fish distribution. Our results underline that both food availability and fish densities vary greatly over the nursery ground. When considering small organisational levels (e.g., a single fish species), the predator-prey spatial relationship was not clear, likely because of additional environmental effects not identified here; but at larger organisational level (the whole juvenile fish community), a strong overlap between the fish predators and their prey was identified. The evidence that fish concentrate in sectors with high food availability suggests that either food is the limiting factor in that nursery or/and fish display behavioural responses by optimising their energetic expenditures associated with foraging. Further investigations are needed to test the two hypotheses and to assess the impact of benthic and demersal juvenile fish in the food web of coastal nurseries.

  5. Species-specific patterns of aggregation of wild fish around fish farms

    NASA Astrophysics Data System (ADS)

    Dempster, T.; Sanchez-Jerez, P.; Uglem, I.; Bjørn, P.-A.

    2010-01-01

    Fish-farming structures are widespread in coastal waters and are highly attractive to wild fish. Several studies have estimated that tons to tens of tons of wild fish aggregate around fish farms. These estimates assumed that the majority of wild fish are concentrated immediately beneath farms, although this assumption has never been explicitly tested. We tested the hypothesis that abundances of wild fish would be greatest immediately beneath farms and progressively diminish with distance at 4 full-scale coastal salmon ( Salmo salar) farms in Norway. At each farm, fish were counted with a video-camera system at 5 different distances from the cages (farm = 0 m, 25, 50, 100 and 200 m) throughout the water column on three separate days. Combined across all locations and times, the total abundance of wild fish was 20 times greater at the farm than at the 200 m sampling distance. Saithe ( Pollachius virens) dominated assemblages at all 4 farms and were consistently significantly more abundant at the farm than at the 25-200 m distances. This 'tight aggregation' around farms corresponds to the reliance of saithe on waste feed when they school near farms. In contrast, patterns of distribution of both cod ( Gadus morhua) and poor cod ( Trisopterus minutus) varied among farms, with either highest abundances at the farm or a more even distribution of abundance across all 5 distances sampled. No specific pattern of aggregation was evident for the bottom-dwelling haddock ( Melanogrammus aeglefinus). Our results suggest that the present 100 m no-fishing zone around salmon farms protects the greatest proportion of farm-aggregated saithe and cod from fishing during the daytime. However, whether this reduces their overall susceptibility to fishing requires further research regarding nighttime distribution and movements.

  6. Connecting ground water influxes with fish species diversity in an urbanized watershed

    USGS Publications Warehouse

    Steffy, L.Y.; McGinty, A.L.; Welty, C.; Kilham, S.S.

    2004-01-01

    Valley Creek watershed is a small stream system that feeds the Schuylkill River near Philadelphia, Pennsylvania. The watershed is highly urbanized, including over 17 percent impervious surface cover (ISC) by area. Imperviousness in a watershed has been linked to fish community structure and integrity. Generally, above 10 to 12 percent ISC there is marked decline in fish assemblages with fish being absent above 25 percent ISC. This study quantifies the importance of ground water in maintaining fish species diversity in subbasins with over 30 percent ISC. Valley Creek contains an atypical fish assemblage in that the majority of the fish are warm-water species, and the stream supports naturally reproducing brown trout, which were introduced and stocked from the early 1900s to 1985. Fish communities were quantified at 13 stations throughout the watershed, and Simpson's species diversity index was calculated. One hundred and nine springs were located, and their flow rates measured. A cross covariance analysis between Simpson's species diversity index and spring flow rates upstream of fish stations was performed to quantify the spatial correlation between these two variables. The correlation was found to be highest at lag distances up to about 400 m and drop off significantly beyond lag distances of about 800 m.

  7. OCCURRENCE OF TWO LEECH SPECIES (ANNELIDA: HIRUDINEA) ON FISHES IN THE KENTUCKY RIVER

    EPA Science Inventory

    Little is known specifically on the feeding relationships between parasitic leeches and fish in North America. During an electrofishing survey conducted on the main stem of the Kentucky River in the summer of 2000, the presence of leeches was documented on six species of fish. ...

  8. 78 FR 77659 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-24

    ... (16344) was published in the Federal Register on April 14, 2011 (76 FR 20956). Permit 16344 was issued to... Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric... CFR parts 222-226) governing listed fish and wildlife permits. ] Species Covered in This Notice...

  9. 75 FR 33243 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-11

    ... Register on June 17, 2009 (74 FR 28666). Permit 14268 was issued to TRPA on April 27, 2010. Permit 14268... Anadromous Fish AGENCY: NOAA's National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric...) governing listed fish and wildlife permits. Species Covered in This Notice This notice is relevant to...

  10. SEASONAL TOXICITY OF AMMONIA TO FIVE FISH AND NINE INVERTEBRATE SPECIES

    EPA Science Inventory

    The effects of ammonia toxicity were determined for 14 aquatic species (5 fish and 9 invertebrates) in short-term laboratory tests. Forty-five tests were conducted and individual 96-h values (48-h for cladocera) ranged from 0.26 to 22.8 mg/1 NH3. The most sensitive fish and inver...

  11. 78 FR 69823 - Atlantic Highly Migratory Species; Exempted Fishing, Scientific Research, Display, and Chartering...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-11-21

    ...NMFS announces its intent to issue Exempted Fishing Permits (EFPs), Scientific Research Permits (SRPs), Display Permits, Letters of Acknowledgment (LOAs), and Chartering Permits for Atlantic highly migratory species (HMS) in 2014. Exempted fishing permits and related permits would authorize collection of a limited number of tunas, swordfish, billfishes, and sharks (collectively known as HMS)......

  12. CONDITIONS FOR COEXISTENCE OF FRESHWATER MUSSEL SPECIES VIA PARTITIONING OF FISH HOST RESOURCES

    EPA Science Inventory

    Riverine freshwater mussel species can be found in highly diverse communities where many similar species coexist. Mussel species potentially compete for food and space as adults, and for fish host resources during the larval (glochidial) stage. Resource partitioning at the larv...

  13. 78 FR 43145 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-07-19

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration RIN 0648-XC767 Endangered and Threatened Species; Take of Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...

  14. 78 FR 34653 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-06-10

    ... From the Federal Register Online via the Government Publishing Office DEPARTMENT OF COMMERCE National Oceanic and Atmospheric Administration RIN 0648-XC717 Endangered and Threatened Species; Take of Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and...

  15. EVALUATION OF THREE FISH SPECIES AS BIOASSAY ORGANISMS FOR DREDGED MATERIAL TESTING

    EPA Science Inventory

    Three fish species, Cyprinodon variegatus, Fundulus similis, and Menidia menidia, were evaluated to determine which is most suitable as a bioassay organism for solid phase testing of dredged material. Acute toxicity and bioaccumulation of polychlorinated biphenyls (PCBs) were mon...

  16. Morphological features to distinguish the larval stage of invasive Ruffe (Gymnocephalus cernuus) from native fish species

    EPA Science Inventory

    Larval fish surveys are used in a variety of research and monitoring activities, including identification of nursery habitat and invasive species early detection. Morphologically-based taxonomic identification of larvae collected from these surveys, however, is often challenging....

  17. Morphological features to distinguish the larval stage of invasive Ruffe from native fish species

    EPA Science Inventory

    Larval fish surveys are used in a variety of research and monitoring activities, including identification of nursery habitat and invasive species early detection. Morphologically-based taxonomic identification of larvae collected from these surveys, however, is often challenging....

  18. Host tropism of infectious salmon anaemia virus in marine and freshwater fish species.

    PubMed

    Aamelfot, M; Dale, O B; McBeath, A; Falk, K

    2015-08-01

    The aquatic orthomyxovirus infectious salmon anaemia virus (ISAV) causes a severe disease in farmed Atlantic salmon, Salmo salar L. Although some ISA outbreaks are caused by horizontal transmission of virus between farms, the source and reservoir of the virus is largely unknown and a wild host has been hypothesized. Atlantic salmon are farmed in open net-pens, allowing transmission of pathogens from wild fish and the surrounding environment to the farmed fish. In this study, a large number of fish species were investigated for ISAV host potential. For orthomyxoviruses, a specific receptor binding is the first requirement for infection; thus, the fish species were investigated for the presence of the ISAV receptor. The receptor was found to be widely distributed across the fish species. All salmonids expressed the receptor. However, only some of the cod-like and perch-like fish did, and all flat fish were negative. In the majority of the positive species, the receptor was found on endothelial cells and/or on red blood cells. The study forms a basis for further investigations and opens up the possibility for screening species to determine whether a wild host of ISAV exists. PMID:25048819

  19. Levels of genetic diversity and taxonomic status of Epinephelus species in United Arab Emirates fish markets.

    PubMed

    Ketchum, Remi N; Dieng, Mame M; Vaughan, Grace O; Burt, John A; Idaghdour, Youssef

    2016-04-30

    Understanding the patterns of genetic diversity of fish species is essential for marine conservation and management. This is particularly important in the Arabian Gulf where marine life is subject to extreme environmental conditions that could impact genetic diversity. Here we assess genetic diversity of the most commercially important fish in the United Arab Emirates; groupers (Epinephelus spp.). Sequencing of 973 bp mitochondrial DNA from 140 tissue samples collected in four main fish markets revealed 58 haplotypes clustered within three groups. Data analysis revealed the presence of three distinct Epinephelus species being marketed as one species (hammour): Epinephelus coioides, Epinephelus areolatus and Epinephelus bleekeri. We report species-specific genetic markers and demonstrate that all three species exhibit relatively low levels of genetic variation, reflecting the effect of overfishing and environmental pressures. In light of the genetic evidence presented here, conservation and management of groupers in the UAE warrant the implementation of species-specific measures. PMID:26656801

  20. Effects of an artificial reef system on demersal nekton assemblages in Xiangshan Bay, China

    NASA Astrophysics Data System (ADS)

    Jiang, Yazhou; Lin, Nan; Yuan, Xingwei; Jiao, Haifeng; Shentu, Jikang; Li, Shengfa

    2016-01-01

    In 2012, an artificial reef system was deployed in Xiangshan Bay, China, to enhance its fishery resources. To determine the effect of the artificial reef system on the demersal nekton assemblages, a beforeafter- control-impact study design was applied. Comparisons of assemblages from impact and control habitats revealed that the assemblage in the impact area had a gradual response to reef deployment. The assemblages in the impact and control areas changed in different ways after reef deployment. During the study period, total biomass, species richness and average body weight in the control area remained relatively stable, whereas there were significant increases in these indicators in the impact area. Responses to the reefs differed among nekton species, inducing assemblage succession in the reefs post-deployment. Sparus macrocephalus and Cynoglossus abbreviatus benefited most from reef deployment. Conversely, smallsized shrimp Palaemon gravieri showed a progressive decrease in biomass following reef deployment. Overall, the artificial reef system diversified the demersal nekton assemblage, enhanced the total biomass, and increased the proportion of large-sized species.

  1. Trawls and cooling-water intakes as estuarine fish sampling tools: Comparisons of catch composition, trends in relative abundance, and length selectivity

    NASA Astrophysics Data System (ADS)

    Greenwood, M. F. D.

    2008-01-01

    Fish populations in estuaries are often monitored with traditional sampling gears such as trawls. Trawling is relatively expensive and may be hindered by environmental conditions such as tides and substrates. Power station cooling-water intake screens have been effectively used as estuarine fish sampling devices for many years, but very few quantitative comparisons of intake fish-catch characteristics with samples from other collection methods have been made. Fish collected at the cooling-water intake of a large power station in the lower Forth estuary, UK, were more similar in assemblage composition to fish caught by nearby pelagic trawling than to fish caught by Agassiz (demersal) trawling, mostly because the intake and pelagic-trawl catches were largely composed of clupeids ( Sprattus sprattus and Clupea harengus). The intake catch was typified by pelagic, demersal, and benthic species, however, and was less variable than the catches made by the two trawls. Monthly trends in relative abundance correlated reasonably well between the intake and trawl samples. Fish collected at the intake tended to be significantly smaller than those collected by trawling, which was probably attributable to the intake's smaller mesh size. The study highlighted the utility of a cooling-water intake as an efficient, low-cost fish sampling device, which should be considered as an alternative to trawling as the cost of the latter increases into the future.

  2. Reef fishes in biodiversity hotspots are at greatest risk from loss of coral species.

    PubMed

    Holbrook, Sally J; Schmitt, Russell J; Messmer, Vanessa; Brooks, Andrew J; Srinivasan, Maya; Munday, Philip L; Jones, Geoffrey P

    2015-01-01

    Coral reef ecosystems are under a variety of threats from global change and anthropogenic disturbances that are reducing the number and type of coral species on reefs. Coral reefs support upwards of one third of all marine species of fish, so the loss of coral habitat may have substantial consequences to local fish diversity. We posit that the effects of habitat degradation will be most severe in coral regions with highest biodiversity of fishes due to greater specialization by fishes for particular coral habitats. Our novel approach to this important but untested hypothesis was to conduct the same field experiment at three geographic locations across the Indo-Pacific biodiversity gradient (Papua New Guinea; Great Barrier Reef, Australia; French Polynesia). Specifically, we experimentally explored whether the response of local fish communities to identical changes in diversity of habitat-providing corals was independent of the size of the regional species pool of fishes. We found that the proportional reduction (sensitivity) in fish biodiversity to loss of coral diversity was greater for regions with larger background species pools, reflecting variation in the degree of habitat specialization of fishes across the Indo-Pacific diversity gradient. This result implies that habitat-associated fish in diversity hotspots are at greater risk of local extinction to a given loss of habitat diversity compared to regions with lower species richness. This mechanism, related to the positive relationship between habitat specialization and regional biodiversity, and the elevated extinction risk this poses for biodiversity hotspots, may apply to species in other types of ecosystems. PMID:25970588

  3. Observations of the distributions of five fish species in a small Appalachian stream

    USGS Publications Warehouse

    Larson, Gary L.; Hoffman, Robert L.; Moore, S.E.

    2002-01-01

    The notion has been growing that resident stream fishes exhibit a greater capacity for movement than was previously thought. In this study, we recorded the distributions of four resident fish species (longnose dace Rhinichthys cataractae, blacknose dace R. atratulus, mottled sculpin Cottus bairdi, and rainbow trout Oncorhynchus mykiss) and one nonresident species (central stoneroller Campostoma anomalum) in Rock Creek, a small tributary of Cosby Creek in Great Smoky Mountains National Park, over the period 1979a??1995. During this study, 1,998 individuals of resident species were collected from stream sections considered to be within a common area of distribution for each species. Forty-five individuals of resident and nonresident species were captured upstream of these areas, and eight of these fish were considered to be larger than individuals considered typical for each species. Small mammal dispersal theory concepts were used to classify and describe fish movements outside of common areas of distribution. These movements were identified as important in maintaining population connectivity within stream drainages, contributing to reducing the potential for local extinctions of populations and to the recolonization of unoccupied habitats. This study highlights the need for continued study of fish movements in stream drainages and for development of appropriate resource management strategies based partly on the spatial dynamics of fish populations and communities.

  4. Late winter larval fish assemblage in the southern East China Sea, with emphasis on spatial relations between mesopelagic and commercial pelagic fish larvae

    NASA Astrophysics Data System (ADS)

    Sassa, Chiyuki; Konishi, Yoshinobu

    2015-10-01

    We examined larval fish assemblages in the southern East China Sea during late winter where large spawning grounds of several commercial pelagic fishes are formed. Our samples include a total of 187 species or taxa of larval fish belonging to 118 genera, 96 families, and 18 orders. Mesopelagic fish larvae, mainly Stomiiformes, Aulopiformes, and Myctophiformes, accounted for 66.5% of the total catch, while commercial species such as Trachurus japonicus, Scomber spp., and Trichiurus japonicus for 16.6%. Based on the species composition, three assemblages were recognized: Kuroshio (KUR), Shelf-Break (BRE), and Shelf (SHE) assemblages. KUR assemblage was mainly characterized by various mesopelagic fishes such as Sigmops gracilis, Diaphus spp., and Myctophum asperum, BRE assemblage by both commercial pelagic and mesopelagic species, SHE assemblage by demersal species such as Lepidotrigla spp. and Gobiidae spp. Both abundance and diversity were highest in KUR assemblage, although food availability for the larvae would be poorest. The combination of variables of sea surface temperature-chlorophyll a concentrations best explained the larval distribution. Except for Benthosema pterotum, the center of distribution of mesopelagic fish larvae was clearly separated from that of the commercial species by the Kuroshio front. However, a northward intrusion of the Kuroshio transported mesopelagic fish larvae onto the shelf, forming the BRE assemblage. Competition for prey between mesopelagic and commercial pelagic fish larvae would potentially occur if the intrusion is strong.

  5. DNA Barcoding for Species Assignment: The Case of Mediterranean Marine Fishes

    PubMed Central

    Landi, Monica; Dimech, Mark; Arculeo, Marco; Biondo, Girolama; Martins, Rogelia; Carneiro, Miguel; Carvalho, Gary Robert; Brutto, Sabrina Lo; Costa, Filipe O.

    2014-01-01

    Background DNA barcoding enhances the prospects for species-level identifications globally using a standardized and authenticated DNA-based approach. Reference libraries comprising validated DNA barcodes (COI) constitute robust datasets for testing query sequences, providing considerable utility to identify marine fish and other organisms. Here we test the feasibility of using DNA barcoding to assign species to tissue samples from fish collected in the central Mediterranean Sea, a major contributor to the European marine ichthyofaunal diversity. Methodology/Principal Findings A dataset of 1278 DNA barcodes, representing 218 marine fish species, was used to test the utility of DNA barcodes to assign species from query sequences. We tested query sequences against 1) a reference library of ranked DNA barcodes from the neighbouring North East Atlantic, and 2) the public databases BOLD and GenBank. In the first case, a reference library comprising DNA barcodes with reliability grades for 146 fish species was used as diagnostic dataset to screen 486 query DNA sequences from fish specimens collected in the central basin of the Mediterranean Sea. Of all query sequences suitable for comparisons 98% were unambiguously confirmed through complete match with reference DNA barcodes. In the second case, it was possible to assign species to 83% (BOLD-IDS) and 72% (GenBank) of the sequences from the Mediterranean. Relatively high intraspecific genetic distances were found in 7 species (2.2%–18.74%), most of them of high commercial relevance, suggesting possible cryptic species. Conclusion/Significance We emphasize the discriminatory power of COI barcodes and their application to cases requiring species level resolution starting from query sequences. Results highlight the value of public reference libraries of reliability grade-annotated DNA barcodes, to identify species from different geographical origins. The ability to assign species with high precision from DNA samples of

  6. Species richness and patterns of invasion in plants, birds, and fishes in the United States

    USGS Publications Warehouse

    Stohlgren, T.J.; Barnett, D.; Flather, C.; Fuller, P.; Peterjohn, B.; Kartesz, J.; Master, L.L.

    2006-01-01

    We quantified broad-scale patterns of species richness and species density (mean # species/km2) for native and non-indigenous plants, birds, and fishes in the continental USA and Hawaii. We hypothesized that the species density of native and non-indigenous taxa would generally decrease in northern latitudes and higher elevations following declines in potential evapotranspiration, mean temperature, and precipitation. County data on plants (n = 3004 counties) and birds (n=3074 counties), and drainage (6 HUC) data on fishes (n = 328 drainages) showed that the densities of native and non-indigenous species were strongly positively correlated for plant species (r = 0.86, P < 0.0001), bird species (r = 0.93, P<0.0001), and fish species (r = 0.41, P<0.0001). Multiple regression models showed that the densities of native plant and bird species could be strongly predicted (adj. R2 = 0.66 in both models) at county levels, but fish species densities were less predictable at drainage levels (adj. R2 = 0.31, P<0.0001). Similarly, non-indigenous plant and bird species densities were strongly predictable (adj. R2 = 0.84 and 0.91 respectively), but non-indigenous fish species density was less predictable (adj. R2 = 0.38). County level hotspots of native and non-indigenous plants, birds, and fishes were located in low elevation areas close to the coast with high precipitation and productivity (vegetation carbon). We show that (1) native species richness can be moderately well predicted with abiotic factors; (2) human populations have tended to settle in areas rich in native species; and (3) the richness and density of non-indigenous plant, bird, and fish species can be accurately predicted from biotic and abiotic factors largely because they are positively correlated to native species densities. We conclude that while humans facilitate the initial establishment, invasions of non-indigenous species, the spread and subsequent distributions of non-indigenous species may be controlled

  7. Discriminant classification of different fish-species backscattering

    NASA Astrophysics Data System (ADS)

    Zhang, Qiao; Xu, Feng; Liu, Yin; Zhang, Chun

    2012-11-01

    The complex structure of fish and multispecies composition complicate the analysis of acoustic data. Consequently, it is difficult to obtain a highly accurate rate of classification by using current approaches. This paper introduces two discriminating methods: the adaptive segmentation temporal centroid method and the wavelet packet multi-scale information entropy method. To verify and compare these two methods, an ex situ experiment has been performed with three kinds of fish: Crucian carp (Carassius auratus), Yellow-headed catfish (Pelteobagrus fulvidraco) and Bluntnose black bream (Megalobrama amblycephale). The backscattering signals of these fishes are obtained. Then the temporal centroid in the divided sub-segmentation of the backscattering envelope is calculated, and the multi-scale information entropy of the wavelet packet decomposition in different frequency bands is extracted. Finally, three kinds of fish are successfully classified by using a BP neural network. The result shows that the adaptive segmentation temporal centroid method is 4% more accurate than the wavelet packet multi-scale information entropy method.

  8. Using a Popular Pet Fish Species to Study Territorial Behaviour

    ERIC Educational Resources Information Center

    Abante, Maria E.

    2005-01-01

    The colourful, vigorous territorial display behaviour of the Siamese fighting fish, "Betta splendens", has great appeal for both pet enthusiasts and animal behaviourists. Their beauty, longevity, easy maintenance and rearing make them a popular pet and an ideal science laboratory specimen. This investigation utilises "B. splendens" to test for the…

  9. Current and future assisted reproductive technologies for fish species

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Food and Agriculture Organization of the United Nations (FAO) estimates that in 2012 aquaculture production of fish will meet or exceed that of the capture fisheries for the first time. Thus, we have just turned the corner from a predominantly hunting gathering approach to meeting our nutrition...

  10. Effect of species, life stage, and water temperature on the toxicity of hydrogen peroxide to fish

    USGS Publications Warehouse

    Rach, J.J.; Schreier, T.M.; Howe, G.E.; Redman, S.D.

    1997-01-01

    Hydrogen peroxide is a drug of low regulatory priority status that is effective in treating fish and fish eggs infected by fungi. However, only limited information is available to guide fish culturists in administering hydrogen peroxide to diseased fish. Laboratory tests were conducted to determine (1) the sensitivity of brown trout Salmo trutta, lake trout Salvelinus namaycush, fathead minnow Pimephales promelas, walleye Stizostedion vitreum, channel catfish Ictalurus punctatus, and bluegill Lepomis, machrochirus to hydrogen peroxide treatments; (2) the sensitivity of various life stages of rainbow trout Oncorhynchus mykiss to hydrogen peroxide treatments; and (3) the effect of water temperature on the acute toxicity of hydrogen peroxide to three fish species. Fish were exposed to hydrogen peroxide concentrations ranging from 100 to 5,000 mu L/L (ppm) for 15-min or 45-min treatments every other day for four consecutive treatments to determine the sensitivity of various species and life stages of fish. Except for walleye, most species of fish tested (less than or equal to 2 g) tolerated hydrogen peroxide of 1,000 mu L/L or greater. Walleyes were sensitive to hydrogen peroxide concentrations as low as 100 mu L/L. A correlation was found between the toxicity of hydrogen peroxide and the life stages of rainbow trout; larger fish were more sensitive. Generally, the toxicity of hydrogen peroxide increased for all species as water temperature increased. The results of these experiments demonstrate that it is important to consider the effects of species, life stage, and water temperature when conducting hydrogen peroxide treatments.

  11. Occurrence and abundance of anisakid nematode larvae in five species of fish from southern Australian waters.

    PubMed

    Shamsi, Shokoofeh; Eisenbarth, Albert; Saptarshi, Shruti; Beveridge, Ian; Gasser, Robin B; Lopata, Andreas L

    2011-04-01

    The aim of the present study was to conduct, in southern Australian waters, a preliminary epidemiological survey of five commercially significant species of fish (yellow-eye mullet, tiger flathead, sand flathead, pilchard and king fish) for infections with anisakid nematodes larvae using a combined morphological-molecular approach. With the exception of king fish, which was farmed and fed commercial pellets, all other species were infected with at least one species of anisakid nematode, with each individual tiger flathead examined being infected. Five morphotypes, including Anisakis, Contracaecum type I and II and Hysterothylacium type IV and VIII, were defined genetically using mutation scanning and targeted sequencing of the second internal transcribed spacer of nuclear ribosomal DNA. The findings of the present study provide a basis for future investigations of the genetic composition of anisakid populations in a wide range of fish hosts in Australia and for assessing their public health significance. PMID:21057811

  12. Use of fish parasite species richness indices in analyzing anthropogenically impacted coastal marine ecosystems

    NASA Astrophysics Data System (ADS)

    Dzikowski, R.; Paperna, I.; Diamant, A.

    2003-10-01

    The diversity of fish parasite life history strategies makes these species sensitive bioindicators of aquatic ecosystem health. While monoxenous (single-host) species may persist in highly perturbed, extreme environments, this is not necessarily true for heteroxenous (multiple-host) species. As many parasites possess complex life cycles and are transmitted through a chain of host species, their dependency on the latter to complete their life cycles renders them sensitive to perturbed environments. In the present study, parasite communities of grey mullet Liza aurata and Liza ramada (Mugilidae) were investigated at two Mediterranean coastal sites in northern Israel: the highly polluted Kishon Harbor (KH) and the relatively unspoiled reference site, Ma'agan Michael (MM). Both are estuarine sites in which grey mullet are one of the most common fish species. The results indicate that fish at the polluted site had significantly less trematode metacercariae than fish at the reference site. Heteroxenous gut helminths were completely absent at the polluted sampling site. Consequently, KH fish displayed lower mean parasite species richness. At the same time, KH fish mean monoxenous parasite richness was higher, although the prevalence of different monoxenous taxa was variable. Copepods had an increased prevalence while monogenean prevalence was significantly reduced at the polluted site. This variability may be attributed to the differential susceptibility of the parasites to the toxicity of different pollutants, their concentration, the exposure time and possible synergistic effects. In this study, we used the cumulative species curve model that extrapolates "true" species richness of a given habitat as a function of increasing sample size. We considered the heteroxenous and monoxenous species separately for each site, and comparison of curves yielded significant results. It is proposed to employ this approach, originally developed for estimating the "true" parasite

  13. Fish and Phytoplankton Exhibit Contrasting Temporal Species Abundance Patterns in a Dynamic North Temperate Lake

    PubMed Central

    Hansen, Gretchen J. A.; Carey, Cayelan C.

    2015-01-01

    Temporal patterns of species abundance, although less well-studied than spatial patterns, provide valuable insight to the processes governing community assembly. We compared temporal abundance distributions of two communities, phytoplankton and fish, in a north temperate lake. We used both 17 years of observed relative abundance data as well as resampled data from Monte Carlo simulations to account for the possible effects of non-detection of rare species. Similar to what has been found in other communities, phytoplankton and fish species that appeared more frequently were generally more abundant than rare species. However, neither community exhibited two distinct groups of “core” (common occurrence and high abundance) and “occasional” (rare occurrence and low abundance) species. Both observed and resampled data show that the phytoplankton community was dominated by occasional species appearing in only one year that exhibited large variation in their abundances, while the fish community was dominated by core species occurring in all 17 years at high abundances. We hypothesize that the life-history traits that enable phytoplankton to persist in highly dynamic environments may result in communities dominated by occasional species capable of reaching high abundances when conditions allow. Conversely, longer turnover times and broad environmental tolerances of fish may result in communities dominated by core species structured primarily by competitive interactions. PMID:25651399

  14. Fish and phytoplankton exhibit contrasting temporal species abundance patterns in a dynamic north temperate lake.

    PubMed

    Hansen, Gretchen J A; Carey, Cayelan C

    2015-01-01

    Temporal patterns of species abundance, although less well-studied than spatial patterns, provide valuable insight to the processes governing community assembly. We compared temporal abundance distributions of two communities, phytoplankton and fish, in a north temperate lake. We used both 17 years of observed relative abundance data as well as resampled data from Monte Carlo simulations to account for the possible effects of non-detection of rare species. Similar to what has been found in other communities, phytoplankton and fish species that appeared more frequently were generally more abundant than rare species. However, neither community exhibited two distinct groups of "core" (common occurrence and high abundance) and "occasional" (rare occurrence and low abundance) species. Both observed and resampled data show that the phytoplankton community was dominated by occasional species appearing in only one year that exhibited large variation in their abundances, while the fish community was dominated by core species occurring in all 17 years at high abundances. We hypothesize that the life-history traits that enable phytoplankton to persist in highly dynamic environments may result in communities dominated by occasional species capable of reaching high abundances when conditions allow. Conversely, longer turnover times and broad environmental tolerances of fish may result in communities dominated by core species structured primarily by competitive interactions. PMID:25651399

  15. Effect of processing conditions on trace elements in fish roe from six commercial new zealand fish species.

    PubMed

    Bekhit, Alaa El-Din A; Morton, James D; Dawson, Chris O

    2008-06-25

    The concentrations of trace elements in fish roes and the effect of processing conditions (karasumi-like or karashi mentaiko) were investigated in six commercial fish species from New Zealand. The studied elements were As, Cd, Cr, Cu, Hg, Pb, and Zn, and the roes were from the following species: chinook salmon ( Oncorhynchus tshawytscha), hoki ( Macruronus novaezelandiae), southern blue whiting ( Micromesistius australis), hake ( Merluccius australis), blue warehou ( Seriolella brama), and barracouta ( Thyrsites atun). The concentrations of As, Cd, Cr, Hg, and Pb in the roes were lower than literature values for fish muscles. Only Zn in barracouta roe and Cu in salmon roe and their products were relatively higher than the generally accepted levels in fish muscles and could be of safety concern. Hence, the consumption of barracouta and salmon roes among certain parts of the population needs to be monitored and assessed. Dry salting (karasumi-like) processing increased ( P < 0.001) the concentrations of the studied trace elements while salting fermentation (karashi mentaiko) processing tended to decrease the levels of trace elements. Fermentation may be a useful process to decrease the level of toxic trace elements. PMID:18494479

  16. Biomonitoring of polychlorinated biphenyls (PCBs) in heavily polluted aquatic environment in different fish species.

    PubMed

    Brázová, Tímea; Hanzelová, Vladimíra; Miklisová, Dana; Šalgovičová, Danka; Turčeková, L'udmila

    2012-11-01

    The distribution and concentrations of polychlorinated biphenyls (PCBs) were determined in fish species (European perch Perca fluviatilis, northern pike Esox lucius, pike perch Sander lucioperca, wels catfish Silirus glanus, common carp Cyprinus carpio, European eel Anguilla anguilla, freshwater bream Abramis brama, goldfish Carassius auratus, and roach Rutilus rutilus) in a heavily polluted water reservoir Zemplínska šírava (Slovakia). The study performed at two different time points 5 years apart (2004 and 2009) revealed serious PCB contamination of fish muscle tissue and significant interspecies as well as tissue-specific differences in PCB uptake by fish. Total PCBs broadly correlated with the trophic position of individual fish species within a food chain (P < 0.01). The concentrations were particularly high in predatory fish species, perch, pike, and pike perch (108.0, 90.1, and 113.0 mg kg(-1) lipid wt, respectively), but comparable PCB values were also found in non-predatory detrivorous freshwater bream (128.0 mg kg(-1) lipid wt). The lowest PCB values were surprisingly assessed in European eel (17.1 mg kg(-1) lipid wt). Tissue analysis showed the highest storage capacity of the liver (hepatopancreas in cyprinids) with maximum concentrations recorded found in northern pike (214.0 mg kg(-1) lipid wt) and freshwater bream (163.0 mg kg(-1) lipid wt). Negative correlations, mostly not significant, between the total PCB concentrations and fish weight were observed (P > 0.05). The study has shown that the kind of fish, its feeding habit, and specific conditions of the habitat are mutually interrelated factors that are responsible for significant variations in fish body burdens. A tendency to PCB biomagnification was also proved in some fish species of this water reservoir. PMID:22173787

  17. Occurrence of three leech species (Annelida: Hirudinida) on fishes in the Kentucky River

    EPA Science Inventory

    Leeches were collected from six fish species distributed among four of ten sites sampled. The leech species observed were Myzobdella reducta (Meyer, 1940) and Myzobdella lugubris Leidy, 1851 of the family Piscicolidae and Placobdella pediculata Hemingway, 1908 of the family Gloss...

  18. Genome analysis of 7 Kengyilia (Triticeae Poaceae) species with FISH and GISH

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genome composition of and genetic relationships among seven Kengyilia species were assessed using a technique of sequential FISH (fluorescence in situ hybridization) and GISH (genomic in situ hybridization). Five of these 7 species, K. kokonorica, K. rigidula, K. hirsula, K. grandiglumis, and K. th...

  19. USE OF SURROGATE SPECIES IN ASSESSING CONTAMINANT RISK TO ENDANGERED AND THREATENED FISHES

    EPA Science Inventory

    Surrogate species used in toxicity assessments must be carefully selected in order to be protective of listed species. At present, the rainbow trout is considered to be an acceptable surrogate for coldwater fishes. Similarly, the fathead minnow is considered to be an acceptable s...

  20. TOXICITY OF PENTACHLOROPHENOL TO ENDANGERED AND SURROGATE FISH SPECIES

    EPA Science Inventory

    Water quality criteria (WQC) generally are based on the responses of easily cultured and tested surrogate species. Little is known about the relative sensitivity of surrogate and endangered species. The objective of this study was to compare acute and chronic (early life-stage) ...

  1. Role of self-caught fish in total fish consumption rates for recreational fishermen: Average consumption for some species exceeds allowable intake.

    PubMed

    Burger, Joanna

    2013-01-01

    Studies of fish consumption focus on recreational or subsistence fishing, on awareness and adherence to advisories, consumption patterns, and contaminants in fish. Yet the general public obtains their fish from commercial sources. In this paper I examine fish consumption patterns of recreational fishermen in New Jersey to determine: 1) consumption rates for self-caught fish and for other fish, 2) meals consumed per year, 3) average meal size, and average daily intake of mercury, and 4) variations in these parameters for commonly-consumed fish, and different methods of computing intake. Over 300 people were interviewed at fishing sites and fishing clubs along the New Jersey shore. Consumption patterns of anglers varied by species of fish. From 2 to 90 % of the anglers ate the different fish species, and between 9 and 75 % gave fish away to family or friends. Self-caught fish made up 7 to 92 % of fish diets. On average, self-caught fish were eaten for only 2 to 6 months of the year, whereas other fish (commercial or restaurant) were eaten up to 10 months a year. Anglers consumed from 5 to 36 meals of different fish a year, which resulted in intake of mercury ranging from 0.01 to 0.22 ug/kg/day. Average intake of Mako shark, swordfish, and tuna (sushi, canned tuna, self-caught tuna) exceeded the U.S. Environmental Protection Agency's oral, chronic reference dose for mercury of 0.1 ug/kg/day. However, computing intake using consumption for the highest month results in average mercury intake exceeding the reference dose for striped bass and bluefish as well. These data, and the variability in consumption patterns, have implications for risk assessors, risk managers, and health professionals. PMID:23914136

  2. Role of self-caught fish in total fish consumption rates for recreational fishermen: Average consumption for some species exceeds allowable intake

    PubMed Central

    Burger, Joanna

    2013-01-01

    Studies of fish consumption focus on recreational or subsistence fishing, on awareness and adherence to advisories, consumption patterns, and contaminants in fish. Yet the general public obtains their fish from commercial sources. In this paper I examine fish consumption patterns of recreational fishermen in New Jersey to determine: 1) consumption rates for self-caught fish and for other fish, 2) meals consumed per year, 3) average meal size, and average daily intake of mercury, and 4) variations in these parameters for commonly-consumed fish, and different methods of computing intake. Over 300 people were interviewed at fishing sites and fishing clubs along the New Jersey shore. Consumption patterns of anglers varied by species of fish. From 2 to 90 % of the anglers ate the different fish species, and between 9 and 75 % gave fish away to family or friends. Self-caught fish made up 7 to 92 % of fish diets. On average, self-caught fish were eaten for only 2 to 6 months of the year, whereas other fish (commercial or restaurant) were eaten up to 10 months a year. Anglers consumed from 5 to 36 meals of different fish a year, which resulted in intake of mercury ranging from 0.01 to 0.22 ug/kg/day. Average intake of Mako shark, swordfish, and tuna (sushi, canned tuna, self-caught tuna) exceeded the U.S. Environmental Protection Agency’s oral, chronic reference dose for mercury of 0.1 ug/kg/day. However, computing intake using consumption for the highest month results in average mercury intake exceeding the reference dose for striped bass and bluefish as well. These data, and the variability in consumption patterns, have implications for risk assessors, risk managers, and health professionals. PMID:23914136

  3. Phytoplankton IF-FISH: Species-specific labeling of cellular proteins by immunofluorescence (IF) with simultaneous species identification by fluorescence immunohybridization (FISH).

    PubMed

    Meek, Megan E; Van Dolah, Frances M

    2016-05-01

    Phytoplankton rarely occur as unialgal populations. Therefore, to study species-specific protein expression, indicative of physiological status in natural populations, methods are needed that will both assay for a protein of interest and identify the species expressing it. Here we describe a protocol for IF-FISH, a dual labeling procedure using immunofluorescence (IF) labeling of a protein of interest followed by fluorescence in situ hybridization (FISH) to identify the species expressing that protein. The protocol was developed to monitor expression of the cell cycle marker proliferating cell nuclear antigen (PCNA) in the red tide dinoflagellate, Karenia brevis, using a large subunit (LSU) rRNA probe to identify K. brevis in a mixed population of morphologically similar Karenia species. We present this protocol as proof of concept that IF-FISH can be successfully applied to phytoplankton cells. This method is widely applicable for the analysis of single-cell protein expression of any protein of interest within phytoplankton communities. PMID:26948044

  4. Spatio-seasonal patterns of fish diversity, Haizhou Bay, China

    NASA Astrophysics Data System (ADS)

    Su, Wei; Xue, Ying; Zhang, Chongliang; Ren, Yiping

    2015-01-01

    Spatial-seasonal patterns in fish diversity in Haizhou Bay were studied based on stratified random surveys conducted in 2011. Principal component analysis was conducted to distinguish different diversity components, and the relationships among 11 diversity indices were explored. Generalized additive models were constructed to examine the environmental effects on diversity indices. Eleven diversity indices were grouped into four components: (1) species numbers and richness, (2) heterogeneous indices, (3) evenness, and (4) taxonomic relatedness. The results show that diversity indices among different components are complementary. Spatial patterns show that fish diversity was higher in coastal areas, which was affected by complex bottom topography and spatial variations of water mass and currents. Seasonal trends could be best explained by the seasonal migration of dominant fish species. Fish diversity generally declined with increasing depth except for taxonomic distinctness, which increased with latitude. In addition, bottom temperature had a significant effect on diversity index of richness. These results indicate that substrate complexity and environmental gradients had important influences on fish diversity patterns, and these factors should be considered in fishery resource management and conservation. Furthermore, diversity in two functional groups (demersal/pelagic fishes) was influenced by different environmental factors. Therefore, the distribution of individual species or new indicators in diversity should be applied to examine spatio-seasonal variations in fish diversity.

  5. Spatio-seasonal patterns of fish diversity, Haizhou Bay, China

    NASA Astrophysics Data System (ADS)

    Su, Wei; Xue, Ying; Zhang, Chongliang; Ren, Yiping

    2014-09-01

    Spatial-seasonal patterns in fish diversity in Haizhou Bay were studied based on stratified random surveys conducted in 2011. Principal component analysis was conducted to distinguish different diversity components, and the relationships among 11 diversity indices were explored. Generalized additive models were constructed to examine the environmental effects on diversity indices. Eleven diversity indices were grouped into four components: (1) species numbers and richness, (2) heterogeneous indices, (3) evenness, and (4) taxonomic relatedness. The results show that diversity indices among different components are complementary. Spatial patterns show that fish diversity was higher in coastal areas, which was affected by complex bottom topography and spatial variations of water mass and currents. Seasonal trends could be best explained by the seasonal migration of dominant fish species. Fish diversity generally declined with increasing depth except for taxonomic distinctness, which increased with latitude. In addition, bottom temperature had a significant effect on diversity index of richness. These results indicate that substrate complexity and environmental gradients had important influences on fish diversity patterns, and these factors should be considered in fishery resource management and conservation. Furthermore, diversity in two functional groups (demersal/pelagic fishes) was influenced by different environmental factors. Therefore, the distribution of individual species or new indicators in diversity should be applied to examine spatio-seasonal variations in fish diversity.

  6. Host-Parasite Interactions in Some Fish Species

    PubMed Central

    Khan, R. A.

    2012-01-01

    Host-parasite interactions are complex, compounded by factors that are capable of shifting the balance in either direction. The host's age, behaviour, immunological status, and environmental change can affect the association that is beneficial to the host whereas evasion of the host's immune response favours the parasite. In fish, some infections that induce mortality are age and temperature dependent. Environmental change, especially habitat degradation by anthropogenic pollutants and oceanographic alterations induced by climatic, can influence parasitic-host interaction. The outcome of these associations will hinge on susceptibility and resistance. PMID:22900144

  7. Content of essential polyunsaturated fatty acids in three canned fish species.

    PubMed

    Gladyshev, Michail I; Sushchik, Nadezhda N; Makhutova, Olesia N; Kalachova, Galina S

    2009-05-01

    Three canned fish species--Pacific saury (Cololabis saira), Pacific herring (Clupea harengus) and Baltic sprat (Sprattus sprattus)--most common and popular in Russia, were analyzed for fatty acids. Special attention was paid to long-chain essential polyunsaturated fatty acids: eicosapentaenoic acid (20:5omega3) and docosahexaenoic acid (22:6omega3). Sums of eicosapentaenoic acid and docosahexaenoic acid in saury, herring and sprat were, on average, 2.42, 1.80 and 1.43 g/100 g product, respectively. Contents of these essential acids in all the canned fish species were found to be very high compared with many other fish reported in the available literature. All the canned fish appeared to be highly valuable products for human nutrition concerning the content of eicosapentaenoic and docosahexaenoic acids. PMID:18608541

  8. Spatial predictability of juvenile fish species richness and abundance in a coral reef environment

    NASA Astrophysics Data System (ADS)

    Mellin, C.; Andréfouët, S.; Ponton, D.

    2007-12-01

    Juvenile reef fish communities represent an essential component of coral reef ecosystems in the current focus of fish population dynamics and coral reef resilience. Juvenile fish survival depends on habitat characteristics and is, following settlement, the first determinant of the number of individuals within adult populations. The goal of this study was to provide methods for mapping juvenile fish species richness and abundance into spatial domains suitable for micro and meso-scale analysis and management decisions. Generalized Linear Models predicting juvenile fish species richness and abundance were developed according to spatial and temporal environmental variables measured from 10 m up to 10 km in the southwest lagoon of New Caledonia. The statistical model was further spatially generalized using a 1.5-m resolution, independently created, remotely sensed, habitat map. This procedure revealed that : (1) spatial factors at 10 to 100-m scale explained up to 71% of variability in juvenile species richness, (2) a small improvement (75%) was gained when a combination of environmental variables at different spatial and temporal scales was used and (3) the coupling of remotely sensed data, geographical information system tools and point-based ecological data showed that the highest species richness and abundance were predicted along a narrow margin overlapping the coral reef flat and adjacent seagrass beds. Spatially explicit models of species distribution may be relevant for the management of reef communities when strong relationships exist between faunistic and environmental variables and when models are built at appropriate scales.

  9. Seasonal investigation of trace element contents in commercially valuable fish species from the Black sea, Turkey.

    PubMed

    Mendil, Durali; Demirci, Zafer; Tuzen, Mustafa; Soylak, Mustafa

    2010-03-01

    Fish species (Sarda sarda, Mulus barbatus ponticus, Trachurus trachurus and Merlangius merlangus) were collected from the Black sea, Turkey between 2008 and 2009 (spring, summer, autumn and winter). The samples were analyzed using flame and graphite furnace atomic absorption spectrometry after microwave digestion. The maximum metal concentrations were found to be as 25.5-41.4 microg/g (Fe), 17.8-25.7 microg/g (Zn), 0.28-0.64 microg/g (Pb), 0.64-0.99 microg/g (Cr), 1.3-3.6 microg/g (Mn), 1.4-1.9 microg/g (Cu), 0.18-0.35 microg/g (Cd) and 0.25-0.42 microg/g (Co) for fish species. The concentration of trace metals in samples is depended on fish species. Some species is accumulated trace metals at high ratio. Trace element levels in analyzed fish species were acceptable to human consumption at nutritional and toxic levels. The levels of lead and cadmium in fish samples were higher than the recommended legal limits. PMID:20036302

  10. Trophic niche partitioning of littoral fish species from the rocky intertidal of Helgoland, Germany

    NASA Astrophysics Data System (ADS)

    Hielscher, N. N.; Malzahn, A. M.; Diekmann, R.; Aberle, N.

    2015-12-01

    During a 3-year field study, interspecific and interannual differences in the trophic ecology of littoral fish species were investigated in the rocky intertidal of Helgoland island (North Sea). We investigated trophic niche partitioning of common coexisting littoral fish species based on a multi-tracer approach using stable isotope and fatty acids in order to show differences and similarities in resource use and feeding modes. The results of the dual-tracer approach showed clear trophic niche partitioning of the five target fish species, the goldsinny wrasse Ctenolabrus rupestris, the sand goby Pomatoschistus minutus, the painted goby Pomatoschistus pictus, the short-spined sea scorpion Myoxocephalus scorpius and the long-spined sea scorpion Taurulus bubalis. Both stable isotopes and fatty acids showed distinct differences in the trophic ecology of the studied fish species. However, the combined use of the two techniques added an additional resolution on the interannual scale. The sand goby P. minutus showed the largest trophic plasticity with a pronounced variability between years. The present data analysis provides valuable information on trophic niche partitioning of fish species in the littoral zones of Helgoland and on complex benthic food webs in general.

  11. Distribution of Anisakis species larvae from fishes of the Japanese waters.

    PubMed

    Quiazon, Karl Marx A; Yoshinaga, Tomoyoshi; Ogawa, Kazuo

    2011-06-01

    Human anisakiasis is caused by the consumption of raw, marinated or undercooked fish and squid infected with nematodes of the genus Anisakis Dujardin, 1845. In view of food safety, this study was carried out to examine the distribution of Anisakis species in marine fishes within Japanese waters. Seven fish species from six localities were collected and examined for Anisakis infection. Morphological and molecular (ITS region and mtDNA cox2 gene) characterization revealed the presence of two, among the three sibling species of Anisakis simplex, viz. A. simplex sensu stricto (s.s.) and A. pegreffii. Distribution data were collated with the results from the previous researches to better understand Anisakis distribution in Japanese waters. Distributions of Anisakis species were found to be locality-specific rather than host-specific, particularly between the two major species, A. simplex s.s. and A. pegreffii. Anisakis simplex s.s. is mainly found in fishes from northern Japan to Pacific sides, whereas A. pegreffii is in fishes from the Sea of Japan to East China Sea sides. PMID:21397715

  12. Contaminant sensitivity of threatened and endangered fishes compared to standard surrogate species

    USGS Publications Warehouse

    Sappington, L.C.; Mayer, F.L.; Dwyer, F.J.; Buckler, D.R.; Jones, J.R.; Ellersieck, Mark R.

    2001-01-01

    Standard environmental assessment procedures are designed to protect terrestrial and aquatic species. However, it is not known if endangered species are adequately protected by these procedures. At present, toxicological data obtained from studies with surrogate test fishes are assumed to be applicable to endangered fish species, but this assumption has not been validated. Static acute toxicity tests were used to compare the sensitivity of rainbow trout, fathead minnows, and sheepshead minnows to several federally listed fishes (Apache trout, Lahontan cutthroat trout, greenback cutthroat trout, bonytail chub, Colorado pikeminnow, razorback sucker, Leon Springs pupfish, and desert pupfish). Chemicals tested included carbaryl, copper, 4-nonylphenol, pentachlorophenol, and permethrin. Results indicated that the surrogates and listed species were of similar sensitivity. In two cases, a listed species had a 96-h LC50 (lethal concentration to 50% of the population) that was less than one half of its corresponding surrogate. In all other cases, differences between listed and surrogate species were less than twofold. A safety factor of two would provide a conservative estimate for listed cold-water, warm-water, and euryhaline fish species.

  13. Identification of Cryptosporidium Species in Fish from Lake Geneva (Lac Léman) in France.

    PubMed

    Certad, Gabriela; Dupouy-Camet, Jean; Gantois, Nausicaa; Hammouma-Ghelboun, Ourida; Pottier, Muriel; Guyot, Karine; Benamrouz, Sadia; Osman, Marwan; Delaire, Baptiste; Creusy, Colette; Viscogliosi, Eric; Dei-Cas, Eduardo; Aliouat-Denis, Cecile Marie; Follet, Jérôme

    2015-01-01

    Cryptosporidium, a protozoan parasite that can cause severe diarrhea in a wide range of vertebrates including humans, is increasingly recognized as a parasite of a diverse range of wildlife species. However, little data are available regarding the identification of Cryptosporidium species and genotypes in wild aquatic environments, and more particularly in edible freshwater fish. To evaluate the prevalence of Cryptosporidiumspp. in fish from Lake Geneva (Lac Léman) in France, 41 entire fish and 100 fillets (cuts of fish flesh) were collected from fishery suppliers around the lake. Nested PCR using degenerate primers followed by sequence analysis was used. Five fish species were identified as potential hosts of Cryptosporidium: Salvelinus alpinus, Esox lucius, Coregonus lavaretus, Perca fluviatilis, and Rutilus rutilus. The presence of Cryptosporidium spp. was found in 15 out of 41 fish (37%), distributed as follows: 13 (87%) C. parvum, 1 (7%) C. molnari, and 1 (7%) mixed infection (C. parvum and C. molnari). C. molnari was identified in the stomach, while C. parvum was found in the stomach and intestine. C. molnari was also detected in 1 out of 100 analyzed fillets. In order to identify Cryptosporidium subtypes, sequencing of the highly polymorphic 60-kDa glycoprotein (gp60) was performed. Among the C. parvum positive samples, three gp60 subtypes were identified: IIaA15G2R1, IIaA16G2R1, and IIaA17G2R1. Histological examination confirmed the presence of potential developmental stages of C. parvum within digestive epithelial cells. These observations suggest that C. parvum is infecting fish, rather than being passively carried. Since C. parvum is a zoonotic species, fish potentially contaminated by the same subtypes found in terrestrial mammals would be an additional source of infection for humans and animals, and may also contribute to the contamination of the environment with this parasite. Moreover, the risk of human transmission is strengthened by the

  14. Identification of Cryptosporidium Species in Fish from Lake Geneva (Lac Léman) in France

    PubMed Central

    Certad, Gabriela; Dupouy-Camet, Jean; Gantois, Nausicaa; Hammouma-Ghelboun, Ourida; Pottier, Muriel; Guyot, Karine; Benamrouz, Sadia; Osman, Marwan; Delaire, Baptiste; Creusy, Colette; Viscogliosi, Eric; Aliouat-Denis, Cecile Marie; Follet, Jérôme

    2015-01-01

    Cryptosporidium, a protozoan parasite that can cause severe diarrhea in a wide range of vertebrates including humans, is increasingly recognized as a parasite of a diverse range of wildlife species. However, little data are available regarding the identification of Cryptosporidium species and genotypes in wild aquatic environments, and more particularly in edible freshwater fish. To evaluate the prevalence of Cryptosporidiumspp. in fish from Lake Geneva (Lac Léman) in France, 41 entire fish and 100 fillets (cuts of fish flesh) were collected from fishery suppliers around the lake. Nested PCR using degenerate primers followed by sequence analysis was used. Five fish species were identified as potential hosts of Cryptosporidium: Salvelinus alpinus, Esox lucius, Coregonus lavaretus, Perca fluviatilis, and Rutilus rutilus. The presence of Cryptosporidium spp. was found in 15 out of 41 fish (37%), distributed as follows: 13 (87%) C. parvum, 1 (7%) C. molnari, and 1 (7%) mixed infection (C. parvum and C. molnari). C. molnari was identified in the stomach, while C. parvum was found in the stomach and intestine. C. molnari was also detected in 1 out of 100 analyzed fillets. In order to identify Cryptosporidium subtypes, sequencing of the highly polymorphic 60-kDa glycoprotein (gp60) was performed. Among the C. parvum positive samples, three gp60 subtypes were identified: IIaA15G2R1, IIaA16G2R1, and IIaA17G2R1. Histological examination confirmed the presence of potential developmental stages of C. parvum within digestive epithelial cells. These observations suggest that C. parvum is infecting fish, rather than being passively carried. Since C. parvum is a zoonotic species, fish potentially contaminated by the same subtypes found in terrestrial mammals would be an additional source of infection for humans and animals, and may also contribute to the contamination of the environment with this parasite. Moreover, the risk of human transmission is strengthened by the

  15. Projecting future changes in distributions of pelagic fish species of Northeast Pacific shelf seas

    NASA Astrophysics Data System (ADS)

    Cheung, William W. L.; Brodeur, Richard D.; Okey, Thomas A.; Pauly, Daniel

    2015-01-01

    Marine life is being affected by changes in ocean conditions resulting from changes in climate and chemistry triggered by combustion of fossil fuels. Shifting spatial distributions of fish species is a major observed and predicted impact of these oceanographic changes, and such shifts may modify fish community structure considerably in particular locations and regions. We projected future range shifts of pelagic marine fishes of the Northeast Pacific shelf seas by 2050 relative to the present. We combined published data, expert knowledge, and pelagic fish survey data to predict current species distribution ranges of 28 fish species of the Northeast Pacific shelf seas that occur in the epipelagic zone and are well-represented in pelagic fish surveys. These represent a wide spectrum of sub-tropical to sub-polar species, with a wide range of life history characteristics. Using projected ocean condition changes from three different Earth System Models, we simulated changes in the spatial distribution of each species. We show that Northeast Pacific shelf seas may undergo considerable changes in the structure of its pelagic marine communities by mid-21st century. Ensembles of model projections suggest that the distribution centroids of the studied species are expected to shift poleward at an average rate of 30.1 ± 2.34 (S.E.) km decade-1 under the SRES A2 scenario from 2000 to 2050. The projected species range shifts result in a high rate of range expansion of this group of species into the Gulf of Alaska and the Bering Sea. Rate of range contraction of these species is highest at the Aleutian Islands, and in the California Current Large Marine Ecosystem. We also predict increasing dominance of warmer water species in all regions. The projected changes in species assemblages may have large ecological and socio-economic implications through mismatches of co-evolved species, unexpected trophic effects, and shifts of fishing grounds. These results provide hypotheses of

  16. Salinity and temperature tolerance of an emergent alien species, the Amazon fish Astronotus ocellatus

    USGS Publications Warehouse

    Gutierrel, Silvia M M; Schofield, Pam; Prodocimo, Viviane

    2016-01-01

    Astronotus ocellatus (oscar), is native to the Amazon basin and, although it has been introduced to many countries, little is known regarding its tolerances for salinity and temperature. In this report, we provide data on the tolerance of A. ocellatus to abrupt and gradual changes in salinity, its high and low temperature tolerance, and information on how salinity, temperature, and fish size interact to affect survival. Fish were able to survive abrupt transfer to salinities as high as 16 ppt with no mortality. When salinity change was gradual (2 ppt/day), fish in the warm-temperature experiment (28°C) survived longer than fish in the cool-temperature experiment (18°C). Larger fish survived longer than smaller ones at the higher salinities when the temperature was warm, but when the temperature was cool fish size had little effect on survival. In the temperature-tolerance experiments, fish survived from 9 to 41°C for short periods of time. Overall, the species showed a wide range of temperature and salinity tolerance. Thus, in spite of the tropical freshwater origin of this species, physiological stress is not likely to hinder its dispersal to brackish waters, especially when temperatures are warm.

  17. Measuring marine fish biodiversity: temporal changes in abundance, life history and demography

    PubMed Central

    Hutchings, Jeffrey A; Baum, Julia K

    2005-01-01

    Patterns in marine fish biodiversity can be assessed by quantifying temporal variation in rate of population change, abundance, life history and demography concomitant with long-term reductions in abundance. Based on data for 177 populations (62 species) from four north-temperate oceanic regions (Northeast Atlantic and Pacific, Northwest Atlantic, North mid-Atlantic), 81% of the populations in decline prior to 1992 experienced reductions in their rate of loss thereafter; species whose rate of population decline accelerated after 1992 were predominantly top predators such as Atlantic cod (Gadus morhua), sole (Solea solea) and pelagic sharks. Combining population data across regions and species, marine fish have declined 35% since 1978 and are currently less than 70% of recorded maxima; demersal species are generally at historic lows, pelagic species are generally stable or increasing in abundance. Declines by demersal species have been associated with substantive increases in pelagic species, a pattern consistent with the hypothesis that increases in the latter may be attributable to reduced predation mortality. There is a need to determine the consequences to population growth effected by the reductions in age (21%) and size (13%) at maturity and in mean age (5%) and size (18%) of spawners, concomitant with population decline. We conclude that reductions in the rate of population decline, in the absence of targets for population increase, will be insufficient to effect a recovery of marine fish biodiversity, and that great care must be exercised when interpreting multi-species patterns in abundance. Of fundamental importance is the need to explain the geographical, species-specific and habitat biases that pervade patterns of marine fish recovery and biodiversity. PMID:15814348

  18. Trace metals health risk appraisal in fish species of Arabian Sea.

    PubMed

    Yasmeen, Kousar; Mirza, Muhammad Aslam; Khan, Namra A; Kausar, Nazish; Rehman, Atta-Ur; Hanif, Muddasir

    2016-01-01

    Fish is a vital food for humans and many animals. We report an environmental monitoring study to assess the trace metals in fish species caught from Arabian Sea and commercially available in the coastal city Karachi, Pakistan. Heavy metals such as copper, iron, lead and cadmium were determined in the skin, fillet and heart of the fish species Pampus argenteus, Epinephelus chlorostigma, Rachycentron canadum, Scomberomorus commerson, Johnius belangerii, Labeo rohita, Lutjanus argentimaculatus, Trachinotus blochii, Pomadsys olivaceum and Acanthopagrus berda by the atomic absorption spectrophotometer. The concentration (mg kg(-1), dry weight) range was: Cd (0.00-0.041), Cu (0.006-0.189), Fe (0.413-4.952) and Pb (0.00-0.569). Cadmium, copper and iron levels were below the tolerable limits whereas concentration of lead in the skins of S. commerson, E. chlorostigma, J. belangerii, A. berda; L. argentimaculatus, fillets of J. belangerii, E. chlorostigma and in the heart of J. belangerii exceeded the recommended limits. Therefore fish skin should be discouraged as food for humans or animals. The results indicate that a number of fish species have higher concentration of heavy metals dangerous for human health. Since the fish P. olivaceum (Dhotar) has the lowest level of trace metals therefore we recommend it for breeding and human consumption. PMID:27386308

  19. Bed disturbance via foraging fish increases bedload transport during subsequent high flows and is controlled by fish size and species

    NASA Astrophysics Data System (ADS)

    Pledger, A. G.; Rice, S. P.; Millett, J.

    2016-01-01

    Benthic foraging by fish can modify the nature and rates of fine sediment accrual and the structure and topography of coarse-grained fluvial substrates, with the potential to alter bed material characteristics, particle entrainment thresholds, and bedload transport fluxes. However, knowledge of what controls the nature, extent, and intensity of benthic foraging and the consequent influence of these controls on geomorphic impact remain rudimentary. An ex-situ experiment utilising Barbel Barbus barbus and Chub Leuciscus cephalus extended previous work by considering the role of fish size and species as controls of sediment disturbance by foraging and the implications for bed material characteristics and bedload transport. In a laboratory flume, changes in bed microtopography and structure were measured when a water-worked bed of 5.6-22.6 mm gravels was exposed to four size classes of Barbel (4-5″, 5-6″, 6-8″, 8-10″ in length) and a single size class of Chub (8-10″). In line with other studies that have investigated animal size as a control of zoogeomorphic agency, increasing the size of Barbel had a significant effect on measured disturbance and transport metrics. Specifically, the area of disturbed substrate, foraging depth, and the fish's impact on microtopographic roughness and imbrication all increased as a function of fish size. In a comparison of the foraging effects of like-sized Barbel and Chub, 8-10″ in length, Barbel foraged a larger area of the test bed and had a greater impact on microtopographic roughness and sediment structure. Relative to water-worked beds that were not foraged, bed conditioning by both species was associated with increased bedload transport during the subsequent application of high flows. However, the bedload flux after foraging by Barbel, which is a specialist benthivore, was 150% higher than that following foraging by Chub, which feed opportunistically from the bed, and the total transported mass of sediment was 98

  20. Metals in Some Edible Fish and Shrimp Species Collected in Dry Season from Subarnarekha River, India.

    PubMed

    Giri, Soma; Singh, Abhay Kumar

    2015-08-01

    The concentration of As, Cd, Cu, Fe, Pb, Ni, Zn, Cr, Co and Sr were determined in five fish and one shrimp species collected from the Subarnarekha River during pre-monsoon season using inductively coupled plasma-mass spectrometry for a risk assessment and source apportionment study. Concentrations of metals in the fish and shrimp exceeded the recommended food standards for As, Cu, Ni, Cd and Zn in many samples. Principal component analysis suggested both innate and anthropogenic activities as contributing sources of metal in the fish and shrimp. The calculated target hazard quotients and hazard indices indicated that high concentrations of metals in some species at some locations present an appreciable risk to the health of consumers of these species. PMID:26058722

  1. Fish species substitution and misnaming in South Africa: An economic, safety and sustainability conundrum revisited.

    PubMed

    Cawthorn, Donna-Mareè; Duncan, John; Kastern, Chris; Francis, Junaid; Hoffman, Louwrens C

    2015-10-15

    While fish species mislabelling has emerged as a global problem, the tracking of improvements or deteriorations in seafood trading practices is challenging without a consistent basis for monitoring. The aim of this study was to develop a robust, repeatable species authentication protocol that could be used to benchmark the current and future incidences of fish mislabelling in South Africa. Using this approach, 149 fish samples collected from restaurants and retailers in three provinces (KwaZulu-Natal, Western Cape and Gauteng) were identified using DNA barcoding, supplemented in certain cases with mitochondrial control region sequencing. Overall, 18% of samples were incorrectly described in terms of species, with similar misrepresentation rates in restaurants (18%) and retail outlets (19%). While there appears to be some improvement in the transparency of local seafood marketing compared to previous studies, the results remain of concern and signal the need for enhanced seafood labelling regulations, monitoring and law enforcement. PMID:25952855

  2. Hierarchical faunal filters: An approach to assessing effects of habitat and nonnative species on native fishes

    USGS Publications Warehouse

    Quist, M.C.; Rahel, F.J.; Hubert, W.A.

    2005-01-01

    Understanding factors related to the occurrence of species across multiple spatial and temporal scales is critical to the conservation and management of native fishes, especially for those species at the edge of their natural distribution. We used the concept of hierarchical faunal filters to provide a framework for investigating the influence of habitat characteristics and normative piscivores on the occurrence of 10 native fishes in streams of the North Platte River watershed in Wyoming. Three faunal filters were developed for each species: (i) large-scale biogeographic, (ii) local abiotic, and (iii) biotic. The large-scale biogeographic filter, composed of elevation and stream-size thresholds, was used to determine the boundaries within which each species might be expected to occur. Then, a local abiotic filter (i.e., habitat associations), developed using binary logistic-regression analysis, estimated the probability of occurrence of each species from features such as maximum depth, substrate composition, submergent aquatic vegetation, woody debris, and channel morphology (e.g., amount of pool habitat). Lastly, a biotic faunal filter was developed using binary logistic regression to estimate the probability of occurrence of each species relative to the abundance of nonnative piscivores in a reach. Conceptualising fish assemblages within a framework of hierarchical faunal filters is simple and logical, helps direct conservation and management activities, and provides important information on the ecology of fishes in the western Great Plains of North America. ?? Blackwell Munksgaard, 2004.

  3. Mercury and selenium levels in 19 species of saltwater fish from New Jersey as a function of species, size, and season.

    PubMed

    Burger, Joanna; Gochfeld, Michael

    2011-03-15

    There are few data on risks to biota and humans from mercury levels in saltwater fish. This paper examines mercury and selenium levels in muscle of 19 species of fish caught by recreational fisherfolk off the New Jersey shore, as a function of species of fish, size, and season, and risk of mercury to consumers. Average mercury levels ranged from 0.01 ppm (wet weight) (Menhaden Brevoortia tyrannus) to 1.83 ppm (Mako Shark Isurus oxyrinchus). There were four categories of mercury levels: very high (only Mako), high (averaging 0.3-0.5 ppm, 3 species), medium (0.14-0.20 ppm, 10 species), and low (below 0.13 ppm, 5 species). Average selenium levels for the fish species ranged from 0.18 ppm to 0.58 ppm, and had lower variability than mercury (coefficient of variation=38.3 vs 69.1%), consistent with homeostatic regulation of this essential element. The correlation between mercury and selenium was significantly positive for five and negative for two species. Mercury levels showed significant positive correlations with fish size for ten species. Size was the best predictor of mercury levels. Selenium showed no consistent relationship to fish length. Over half of the fish species had some individual fish with mercury levels over 0.3 ppm, and a third had fish with levels over 0.5 ppm, levels that pose a human health risk for high end consumers. Conversely several fish species had no individuals above 0.5 ppm, and few above 0.3 ppm, suggesting that people who eat fish frequently, can reduce their risk from mercury by selecting which species (and which size) to consume. Overall, with the exception of shark, Bluefin Tuna (Thunnus thynnus), Bluefish (Pomatomus saltatrix) and Striped Bass (Morone saxatilis), the species sampled are generally medium to low in mercury concentration. Selenium:mercury molar ratios were generally above 1:1, except for the Mako shark. PMID:21292311

  4. [Dietary composition and food competition of six main fish species in rocky reef habitat off Gouqi Island].

    PubMed

    Wang, Kai; Zhang, Shou-Yu; Wang, Zhen-Hua; Zhao, Jing; Xu, Min; Lin, Jun

    2012-02-01

    Based on the monthly investigation data of fish resources in the rocky reef habitat off Gouqi Island from March 2009 to February 2010, this paper studied the dietary composition of three native fish species (Sebasticus marmoratus, Hexagrammos otakii and Hexagrammos agrammus) and three non-native fish species (Lateolabrax japonica, Nibea albiflora and Larimichthys polyactis). The analysis of gut content indicated that the main prey items of these six dominant fish species were Caprellidae, Gammaridea, juvenile S. marmoratus, Engraulis japonicas and Acetes chinensis and the dietary composition of each of the 6 fish species had obvious seasonal variation. There was an intense food competition between native species H. otakii and H. agrammus in autumn, between non-native species N. albiflora and L. polyactis in summer, between non-native species N. albiflora and native species S. marmoratus in autumn, and between non-native species N. albiflora and native species H. otakii in winter. It was suggested the non-native species N. albiflora was the key species in the food competition among the six dominant fish species in this rocky reef habitat, and thus the feeding behaviors of these six fish species could have definite effects on the resource capacity of juvenile S. marmoratus. PMID:22586984

  5. Induction of CYP1A in marine fish species from the Gulf of Mexico

    SciTech Connect

    Willett, K.L.; McDonald, S.; Narasimhan, T.R.; Connor, K.; Safe, S.; Kennicutt, M.C.

    1994-12-31

    Ethoxyresorufin O-deethylase (EROD) and aryl hydrocarbon hydroxylase (AHH) activities in over twenty species of fish, invertebrates, and fauna were used as biomarkers of exposure to polynuclear aromatic hydrocarbons (PAHs) in the Gulf of Mexico. The highest AHH and EROD activities in fish were detected in pinfish, tile, flounder, and hardhead catfish. In contrast, minimal to non-detectable induction was observed in invertebrates. Analysis of induction results showed that with the exception of a few species, there was a linear correlation between the induction of EROD vs AHH activity suggesting that ethoxyresorufin and benzo[a]pyrene serve as comparable substrates for CYP1A. In contrast, AHH activity was not induced in either hardhead catfish or lizard fish; whereas, the levels of EROD activity varied from 4.0 to 155 pmol/min/mg. These results indicate that there is some species-dependent variability in the catalytic activity of CYP1A protein in marine fish species, and that more reliable indicators of exposure to PAHs such as CYP1A mRNA levels should also be utilized in environmental monitoring studies. The results of Northern analysis of CYP1A mRNA levels in fish will be presented.

  6. Multi-scale approach for predicting fish species distributions across coral reef seascapes.

    PubMed

    Pittman, Simon J; Brown, Kerry A

    2011-01-01

    Two of the major limitations to effective management of coral reef ecosystems are a lack of information on the spatial distribution of marine species and a paucity of data on the interacting environmental variables that drive distributional patterns. Advances in marine remote sensing, together with the novel integration of landscape ecology and advanced niche modelling techniques provide an unprecedented opportunity to reliably model and map marine species distributions across many kilometres of coral reef ecosystems. We developed a multi-scale approach using three-dimensional seafloor morphology and across-shelf location to predict spatial distributions for five common Caribbean fish species. Seascape topography was quantified from high resolution bathymetry at five spatial scales (5-300 m radii) surrounding fish survey sites. Model performance and map accuracy was assessed for two high performing machine-learning algorithms: Boosted Regression Trees (BRT) and Maximum Entropy Species Distribution Modelling (MaxEnt). The three most important predictors were geographical location across the shelf, followed by a measure of topographic complexity. Predictor contribution differed among species, yet rarely changed across spatial scales. BRT provided 'outstanding' model predictions (AUC = >0.9) for three of five fish species. MaxEnt provided 'outstanding' model predictions for two of five species, with the remaining three models considered 'excellent' (AUC = 0.8-0.9). In contrast, MaxEnt spatial predictions were markedly more accurate (92% map accuracy) than BRT (68% map accuracy). We demonstrate that reliable spatial predictions for a range of key fish species can be achieved by modelling the interaction between the geographical location across the shelf and the topographic heterogeneity of seafloor structure. This multi-scale, analytic approach is an important new cost-effective tool to accurately delineate essential fish habitat and support conservation

  7. Multi-Scale Approach for Predicting Fish Species Distributions across Coral Reef Seascapes

    PubMed Central

    Pittman, Simon J.; Brown, Kerry A.

    2011-01-01

    Two of the major limitations to effective management of coral reef ecosystems are a lack of information on the spatial distribution of marine species and a paucity of data on the interacting environmental variables that drive distributional patterns. Advances in marine remote sensing, together with the novel integration of landscape ecology and advanced niche modelling techniques provide an unprecedented opportunity to reliably model and map marine species distributions across many kilometres of coral reef ecosystems. We developed a multi-scale approach using three-dimensional seafloor morphology and across-shelf location to predict spatial distributions for five common Caribbean fish species. Seascape topography was quantified from high resolution bathymetry at five spatial scales (5–300 m radii) surrounding fish survey sites. Model performance and map accuracy was assessed for two high performing machine-learning algorithms: Boosted Regression Trees (BRT) and Maximum Entropy Species Distribution Modelling (MaxEnt). The three most important predictors were geographical location across the shelf, followed by a measure of topographic complexity. Predictor contribution differed among species, yet rarely changed across spatial scales. BRT provided ‘outstanding’ model predictions (AUC = >0.9) for three of five fish species. MaxEnt provided ‘outstanding’ model predictions for two of five species, with the remaining three models considered ‘excellent’ (AUC = 0.8–0.9). In contrast, MaxEnt spatial predictions were markedly more accurate (92% map accuracy) than BRT (68% map accuracy). We demonstrate that reliable spatial predictions for a range of key fish species can be achieved by modelling the interaction between the geographical location across the shelf and the topographic heterogeneity of seafloor structure. This multi-scale, analytic approach is an important new cost-effective tool to accurately delineate essential fish habitat and support

  8. Digenean species diversity in teleost fishes from the Gulf of Gabes, Tunisia (Western Mediterranean)

    PubMed Central

    Derbel, H.; Châari, M.; Neifar, L.

    2012-01-01

    This study is the first attempt to survey the diversity of fish digeneans in the Gulf of Gabes (southern coast of Tunisia). A total of 779 fishes belonging to 32 species were sampled. 53 species of Digenea belonging to 15 families were recorded. Among these species, 24 are reported for the first time from the coast of Tunisia. We report one new host record, Lecithochirium sp. from Sardinella aurita. The Hemiuridae is the dominant family. A host-parasite list is presented with the information on the prevalence, abundance and mean intensity of each species collected. The diversity of Digenea is compared with other localities in the Mediterranean Sea and the northern east of Tunisia. The Gulf of Gabes shows the lowest diversity linked to the anthropogenic activities and impact of exotic species. The use of Digenea as indicators of the state of the ecosystem is discussed. PMID:22550623

  9. Experimental infection of Aphanomyces invadans and susceptibility in seven species of tropical fish

    PubMed Central

    Afzali, Seyedeh F.; Mohd Daud, Hassan Hj.; Sharifpour, Issa; Afsharnasab, Mohammad; Shankar, Shiv

    2015-01-01

    Aim: Epizootic ulcerative syndrome (EUS) causes by aquatic oomycete fungus, Aphanomyces invadans is a dangerous fish disease of a wide range of fresh and brackish water, wild and farmed fish throughout the world. The objective of the present study was to determine the susceptibility of a number of tropical fish species to the EUS and compare the severity of infection between experimental groups. Materials and Methods: Snakehead, Channa striata (Bloch, 1793); snakeskin gourami, Trichopodus pectoralis (Regan, 1910); koi carp, Cyprinus carpio (Linnaeus, 1758); broadhead catfish, Clarias macrocephalus (Günther, 1864); goldfish, Carassius auratus (Linnaeus, 1758); climbing perch, Anabas testudineus (Bloch, 1792); and Nile tilapia, Oreochromis niloticus (Linnaeus, 1758) were challenged by intramuscular injection using zoospores of Aphanomyces invadans (NJM9701). The infected fish skins and muscles were examined for EUS histopathological characteristics, and the results on the severity of lesions and mortality were analyzed using SPSS program. Results: All zoospore-injected fish were shown to be susceptible to the EUS infection except Nile tilapia. Although, the general histopathological pattern was similar in the zoospore-injected group, but there were some variation in granulomatous reaction, that is the presence or absence of giant cells, and time of mortality were detected. The result of statistical analysis showed that there was a significant difference between species, (c2=145.11 and p<0.01). Conclusion: Gourami, koi carp, and catfish were demonstrated to be highly susceptible while goldfish and climbing perch were found to be moderately susceptible to the EUS infection. These findings suggested that the cellular response of fish to mycotic infection and granulomatous reaction varied in different fish species, which could not be an indicator of susceptibility or resistant to the EUS itself, although it was shown that the granulation rate and the level of maturity

  10. Demersal crustacean assemblages along the Pacific coast of Costa Rica: a quantitative and multivariate assessment based on the Victor Hensen Costa Rica expedition (1993/1994).

    PubMed

    Jesse, S

    1996-12-01

    groups of particular species assemblages can be distinguished in the study areas. Despite a high variability between stations in abundance and biomass, the following four areas of characteristic species assemblages can be identified which are also confirmed by an independent study on demersal fishes: (1) the interior part of the GN, characterized by juvenile shrimps (Sicyonia disdorsalis, Trachypenaeus fuscina), several patchily distributed anomurans, brachyurans and other predator species like portunids (especially Portunus asper) and pre-adult stomatopods (Squilla spp.); (2) the exterior part of the GN with high amounts of caridean (Pantomus affins, Plesionika spp.) and penaeid shrimps (Sicyonia picta, Solenocera mutator), the highly abundant Iliacantha hancocki and some specimens of the stomatopod Hemisquilla stylifera and the deep water portunid Portunus iridescens; (3) a transition zone between 60 and 120 m water depth with a heterogeneous faunal composition, located in the ST and east of Isla Tortugas in the GN, and (4) the oxygen-depleted shelf edge area, dominated by the galatheid Pleuroncodes monodon. Mass occurrence of this species takes place off the GD and to a lesser extent off the ST-estuary, associated with high numbers of Solenocera spp. There seems to be a general trend of species groupings along abiotic gradients (depth, temperature, oxygen saturation) interrupted by small-scale variations in habitat type, current regime, food availability and other factors not identified in this study. Neither total abundance and biomass nor biotic summary parameters like diversity, dominance or species richness correlated well with the abiotic factors measured during this survey. PMID:9393649

  11. Genetic diversity and species diversity of stream fishes covary across a land-use gradient

    USGS Publications Warehouse

    Blum, M.J.; Bagley, M.J.; Walters, D.M.; Jackson, S.A.; Daniel, F.B.; Chaloud, D.J.; Cade, B.S.

    2012-01-01

    Genetic diversity and species diversity are expected to covary according to area and isolation, but may not always covary with environmental heterogeneity. In this study, we examined how patterns of genetic and species diversity in stream fishes correspond to local and regional environmental conditions. To do so, we compared population size, genetic diversity and divergence in central stonerollers (Campostoma anomalum) to measures of species diversity and turnover in stream fish assemblages among similarly sized watersheds across an agriculture-forest land-use gradient in the Little Miami River basin (Ohio, USA). Significant correlations were found in many, but not all, pair-wise comparisons. Allelic richness and species richness were strongly correlated, for example, but diversity measures based on allele frequencies and assemblage structure were not. In-stream conditions related to agricultural land use were identified as significant predictors of genetic diversity and species diversity. Comparisons to population size indicate, however, that genetic diversity and species diversity are not necessarily independent and that variation also corresponds to watershed location and glaciation history in the drainage basin. Our findings demonstrate that genetic diversity and species diversity can covary in stream fish assemblages, and illustrate the potential importance of scaling observations to capture responses to hierarchical environmental variation. More comparisons according to life history variation could further improve understanding of conditions that give rise to parallel variation in genetic diversity and species diversity, which in turn could improve diagnosis of anthropogenic influences on aquatic ecosystems. ?? 2011 Springer-Verlag.

  12. Comparative FISH mapping of Daucus species (Apiaceae family)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The genus Daucus (Apiaceae family) contains about 20 mostly diploid species with n=9, 10 and 11, including carrot (D. carota L., 2n=18). Here, we report a pachytene chromosome-based karyotype of carrot. We integrated the carrot linkage groups with chromosomes by fluorescent in situ hybridization (FI...

  13. WA DEPARTMENT OF FISH & WILDLIFE PRIORITY HABITATS AND SPECIES

    EPA Science Inventory

    This is a database that is being developed from a wildlife inventory program in progress at WDF&W. It consists of polygons or points that describe the limiting habitats of priority species, and priority habitats. The database currently covers state & private forest lands, and u...

  14. Assessment of fish abundance and species composition at selected sites in South Dakota: an overview

    USGS Publications Warehouse

    Harwood, Alison

    2010-01-01

    The U.S. Geological Survey (USGS) conducted surveys of streams throughout the State of South Dakota during 2008-09 as part of the U.S. Environmental Protection Agency?s (USEPA) National Rivers and Streams Assessment (NRSA) Program. During 2008-09, as part of the stream assessment, the USGS completed surveys of fish populations and species composition at 64 sites. Fish were inventoried at 60 of the 64 sites, but not at four of the sites because water was too low to sustain fish or specific conductivity was too high to electroshock effectively. Four of the sites were surveyed in 2000-04 during the USEPA's Environmental Monitoring and Assessment Program-West (EMAP-West) project. Two wadeable sites and two boatable sites were revisited for quality-assurance/quality-control requirements. During the study, both wadeable and boatable streams were sampled using electrofishing equipment and methods. Of the 64 sites, 62 were wadeable and 2 were boatable. Procedures for sampling wadeable streams differed slightly from procedures for boatable streams. Backpack electrofishing equipment was used for wadeable streams, whereas boat electrofishing equipment was used for boatable streams. Wadeable streams also were fished in an opposite direction than boatable streams. Several species of fish were collected during the NRSA. Species diversity ranged from 0-11 species in wadeable streams and from 6-26 species in boatable streams. Many common species were sampled during the study. The most frequently sampled fish was the sand shiner (Notropis stramineus), with 609 individuals sampled. In contrast, only one heritage species, the skipjack herring (Alosa chrysochloris), was identified during 2008-09. Common anomalies found in fish caught were parasitic lesions, "black spot disease," and tumors. When comparing the fish sampling results for the four sites visited in both 2000-04 and in 2008-09, more individuals and species were collected during 2008-09 than in 2000-04 at two sites, whereas

  15. Mercury accumulation in fish species from the Persian Gulf and in human hair from fishermen.

    PubMed

    Agah, Homira; Leermakers, Martine; Gao, Yue; Fatemi, S M R; Katal, M Mohseni; Baeyens, Willy; Elskens, Marc

    2010-10-01

    Total and methylmercury concentrations were assessed in muscle and liver of 141 fish samples from the northern part of the Persian Gulf. All fish samples belonged to five different species: grunt, flathead, greasy grouper, tiger-tooth croaker, and silver pomfret. In addition, Hg and methylmercury were analyzed in scalp hair of 19 fishermen living in the same coastal stations of the Persian Gulf and consuming several fish meals a week. Total mercury concentrations in fish muscle and liver ranged from 0.01 to 1.35 microg g(-1) w.w. and from 0.02 to 1.30 microg g(-1) w.w., respectively. In fish muscle, 3% of the Hg concentrations were higher than 0.5 microg g(-1) w.w., which corresponds to the maximum acceptable WHO level, while 9% were in the range of polluted fish (between 0.3 and 0.5 microg g(-1) w.w.). The highest mercury concentrations in fish muscle were observed in flathead fish at Abadan (average of 0.68 microg g(-1) w.w.). Methylmercury fractions in fish muscle and liver amount to 34-99% (median 64%) and 24-70% (median 43%), respectively. The mean total Hg concentration in the fishermen's scalp hair amounted to 2.9 +/- 2.2 microg g(-1), with 68% in the form of methylmercury. Ninety-five percent of the Hg levels in the fishermen's hair were below 10 microg g(-1), which is the WHO warning limit. In addition, relationships between the mercury levels in hair, on the one hand, and exposure-related factors such as Hg levels in specific fish species, regional differences, and number of fish meals, on the other hand, are discussed. It appears that a significant correlation for example exists between Hg levels human hair and fish muscle or human hair and age and that mean mercury levels in fish muscle and human hair decreased from western (Abadan) to eastern (Abbas port) coastal sites. PMID:19760084

  16. Stress in the neighborhood: Tissue glucocorticoids relative to stream quality for five species of fish.

    PubMed

    King, Gregory D; Chapman, Jacqueline M; Cooke, Steven J; Suski, Cory D

    2016-03-15

    Anthropogenic alterations to terrestrial habitat (e.g., urbanization, deforestation, agriculture) can have a variety of negative effects on watercourses that flow through disturbed landscapes. Currently, the relationship between stream habitat quality and fish condition remains poorly understood. The use of physiological metrics such as glucocorticoids (GCs) provides a useful tool for quantifying these effects by relating the health of resident fishes to stream quality. To date, however, most studies that measure GC levels tend to focus on a single, large-bodied species, rather than evaluating how GCs may be influenced differently between species in a community. In this study, we measured cortisol, the glucocorticoid found in fishes, from fish tissues to quantify effects of habitat degradation on the glucocorticoid function of five species of juvenile and small-bodied stream fish which differ ecologically and phylogenetically. Largemouth bass Micropterus salmoides, brown bullhead Ameiurus nebulosus, white sucker Catostomus commersonii, pumpkinseed Lepomis gibbosus, and logperch Percina caprodes were sampled from a reference and a degraded stream. Upon capture, fish were either euthanized immediately, to quantify baseline stress parameters, or following a standardized stressor, to quantify GC responsiveness. As a result of stream degradation largemouth bass possessed altered baseline GC concentrations and brown bullhead and logperch had altered GC responses to a stressor. White sucker and pumpkinseed did not demonstrate any alteration in baseline or post-stress GC concentrations. Together, our results show that different species residing in identical habitats can demonstrate a variety of responses to environmental stress, highlighting the variation in physiological ability to cope under poor environmental conditions, as well as the difficulty of predicting GC dynamics in wild animals. Understanding the relationships between GC function, habitat quality, and

  17. The fish fauna of Anambra river basin, Nigeria: species abundance and morphometry.

    PubMed

    Odo, Gregory Ejikeme; Didigwu, Nwani Christopher; Eyo, Joseph Effiong

    2009-01-01

    The fish yields of most Nigeria inland waters are generally on the decline for causes that may range from inadequate management of the fisheries to degradation of the water bodies. Sustainable exploitation requires knowledge of the ichthyofaunal composition in the water bodies. We did a survey of fish species in Anambra river basin for 22 months. Fish samples were collected using four different gears -hook and line of size 13, caste nets, gill nets, and cages of mesh sizes of 50 mm, 75 mm, and 100 mm each. We recorded 52 fish species belonging to 17 families: 171, 236, and 169 individuals at Ogurugu, Otuocha, and Nsugbe stations respectively. Two families, Characidae, 19.5%, and Mochokidae, 11.8%, constituted the dominant fish families in the river. The dominant fish species were Citherinus citherius, 9.02%, and Alestes nurse, 7.1%. Other fish species with significant abundance were Synodontis clarias 6.9%, Macrolepidotus curvier 5.7%, Labeo coubie 5.4%, Distichodus rostrtus 4.9%, and Schilbe mystus 4.5%. The meristic features of the two most abundant fish species caught are as follows: Citharinus citharius dorsal fins 20, anal fins 30, caudal fins 21, pectoral fins, 9 and 8 ventral fins, and Alestes nurse 10 dorsal fins, 14 anal fins, 31 caudal fins, 7 pectoral fins and 6 ventral fins. The morphometric features of the two most abundant fish species are Citharinus citharius total length 300 mm, standard length 231 mm, head length 69 mm, body length 101 mm, body girth 176 mm, body weight 900 mg. Alestes nurse total length 200, standard length 140 mm, head length 60 mm, body length 80 mm, body girth 120 mm, body weight 400 mg. The most abundant animal utilizing the basin was Ardea cinerea (D3) with 22.2% occurrence (D4) and this was followed by Caprini with 13.51%, and Varanus niloticus, 10.04%. The least abundant animals utilizing basin were Chephalophus rufilatus, and Erythrocebus patas, with 0.58% each of occurrence. PMID:19637699

  18. Distribution and habitat association of benthic fish on the Condor seamount (NE Atlantic, Azores) from in situ observations

    NASA Astrophysics Data System (ADS)

    Porteiro, Filipe M.; Gomes-Pereira, José N.; Pham, Christopher K.; Tempera, Fernando; Santos, Ricardo S.

    2013-12-01

    Distribution of fish assemblages and habitat associations of demersal fishes on the Condor seamount were investigated by analyzing in situ video imagery acquired by the Remotely-Operated Vehicles ROV SP300 and Luso 6000. A total of 51 fish taxa from 32 families were inventoried. Zooplanktivores (10 species) were the most abundant group followed by carnivores (23 species) and benthivores (18 species). Non-metric multidimensional scaling (MDS) analyses were performed on dive segments to visualize the spatial relationships between species and habitat type, substrate type or depth, with depth being the most significant parameter influencing fish distribution. Four major fish groups were identified from their vertical distribution alone: summit species (generally to <300 m depth); broad ranging species (ca. from 200 to 800 m); intermediate ranging slope species (ca. from 400 m to 800-850 m); and deeper species (800-850-1100 m). The fish fauna observed at the summit is more abundant (15.2 fish/100 m2) and habitat-specialized than the fish observed along the seamount slope. Down the seamount slope, the summit fish assemblage is gradually replaced as depth increases, with an overall reduction in abundance. On the summit, three species (Callanthias ruber, Anthias anthias and Lappanella fasciata) had higher affinity to coral habitats compared to non-coral habitats. A coherent specialized fish assemblage associated to coral habitats could not be identified, because most species were observed also in non-coral areas. On the seamount's slope (300-1100 m), no relationship between fish and coral habitats could be identified, although these might occur at larger scales. This study shows that in situ video imagery complements traditional fishing surveys, by providing information on unknown or rarely seen species, being fundamental for the development of more comprehensive ecosystem-based management towards a sustainable use of the marine environment.

  19. Testing the influence of environmental heterogeneity on fish species richness in two biogeographic provinces

    PubMed Central

    Proulx, Raphaël; Cabana, Gilbert; Rodríguez, Marco A.

    2015-01-01

    Environmental homogenization in coastal ecosystems impacted by human activities may be an important factor explaining the observed decline in fish species richness. We used fish community data (>200 species) from extensive surveys conducted in two biogeographic provinces (extent >1,000 km) in North America to quantify the relationship between fish species richness and local (grain <10 km2) environmental heterogeneity. Our analyses are based on samples collected at nearly 800 stations over a period of five years. We demonstrate that fish species richness in coastal ecosystems is associated locally with the spatial heterogeneity of environmental variables but not with their magnitude. The observed effect of heterogeneity on species richness was substantially greater than that generated by simulations from a random placement model of community assembly, indicating that the observed relationship is unlikely to arise from veil or sampling effects. Our results suggest that restoring or actively protecting areas of high habitat heterogeneity may be of great importance for slowing current trends of decreasing biodiversity in coastal ecosystems. PMID:25699209

  20. Characterization factors for water consumption and greenhouse gas emissions based on freshwater fish species extinction.

    PubMed

    Hanafiah, Marlia M; Xenopoulos, Marguerite A; Pfister, Stephan; Leuven, Rob S E W; Huijbregts, Mark A J

    2011-06-15

    Human-induced changes in water consumption and global warming are likely to reduce the species richness of freshwater ecosystems. So far, these impacts have not been addressed in the context of life cycle assessment (LCA). Here, we derived characterization factors for water consumption and global warming based on freshwater fish species loss. Calculation of characterization factors for potential freshwater fish losses from water consumption were estimated using a generic species-river discharge curve for 214 global river basins. We also derived characterization factors for potential freshwater fish species losses per unit of greenhouse gas emission. Based on five global climate scenarios, characterization factors for 63 greenhouse gas emissions were calculated. Depending on the river considered, characterization factors for water consumption can differ up to 3 orders of magnitude. Characterization factors for greenhouse gas emissions can vary up to 5 orders of magnitude, depending on the atmospheric residence time and radiative forcing efficiency of greenhouse gas emissions. An emission of 1 ton of CO₂ is expected to cause the same impact on potential fish species disappearance as the water consumption of 10-1000 m³, depending on the river basin considered. Our results make it possible to compare the impact of water consumption with greenhouse gas emissions. PMID:21574555

  1. Sperm quality and cryopreservation of Brazilian freshwater fish species: a review.

    PubMed

    Viveiros, A T M; Godinho, H P

    2009-03-01

    The Brazilian freshwater fish diversity is the richest in the world. Only 0.7% of all Brazilian species have had any aspect of their sperm biology addressed up to this date. The majority of the fish species described in this review migrate during the spawning season (a phenomenon known as piracema). Urbanization, pollution, hydroelectric dams and deforestation are some of the causes of stock depletion or even local extinction of some of these species. The knowledge concerning sperm quality and minimum sperm:egg ratio is important to maximize the use of males without reducing hatching rates. Furthermore, sperm cryopreservation and gene banking can guarantee the conservation of genetic diversity and development of adequate breeding programs of native fish species. In this review, we present and evaluate the existing information on Brazilian fish species that have been subject to sperm quality and cryopreservation studies. The following parameters were evaluated: volume of extractable sperm, sperm motility, sperm concentration, freezing media, freezing methods, and post-thaw sperm quality. Although the existing protocols yield relatively high post-thaw motility and fertilization rates, the use of cryopreserved sperm in routine hatchery production is still limited in Brazil. PMID:19189240

  2. Radiometric analysis of samples of domestic fish species and radiological implications.

    PubMed

    Tahir, S N A; Alaamer, A S; Ayub, M; Khan, M Z

    2010-05-01

    Radiometric analysis of samples of commonly sold fish species in Pakistan were carried out for the measurement of concentrations of naturally occurring and artificial radionuclides. For this purpose, a high resolution Ge detector was employed. Mean concentrations of (226)Ra, (228)Ra, and (40)K in fish samples were 1.3 +/- 0.3, 1.0 +/- 0.2, and 90 +/- 15 Bq kg, respectively, whereas concentration of (137)Cs was not detected. The annual effective dose due to ingestion of these radionuclides through fish diet was evaluated to be 2.3 microSv y(-1). This value of effective dose is found much below the average radiation dose of 0.29 mSv y(-1) received per capita worldwide through ingestion of natural radionuclides during the consumption of food assessed by the United Nations Scientific Committee on the Effects of Atomic Radiation. It is concluded that fish supplies in the markets from the domestic fish farms are free from radiological risks. These results may contribute to the national and regional data regarding radioactivity levels in domestic fish species. PMID:20386204

  3. Assessment of metal concentrations in commercially important fish species in Black Sea.

    PubMed

    Alkan, Nigar; Alkan, Ali; Gedik, Kenan; Fisher, Andrew

    2016-03-01

    In the present study, concentrations of arsenic (As), cadmium (Cd), cobalt (Co), chromium (Cr), copper (Cu), manganese (Mn), nickel (Ni), lead (Pb), and zinc (Zn) were measured in the muscle, gill, and gonads of the pelagic fish species Trachurus mediterraneus, Engraulis encrasicolus ponticus, and Sprattus sprattus that are important both commercially and for the ecosystems in the Black Sea. The samples were collected during 2011. The metals were determined using inductively coupled plasma mass spectrometry (ICP-MS) following an acid digestion. The highest concentrations of As, Cd, Co, Cr, Cu, Pb, and Zn were found in E. encrasicolus ponticus, whereas the greatest concentrations of Ni were found in T. mediterraneus and Mn in S. sprattus. Results showed that average metal concentrations in the tissues of T. mediterraneus, E. encrasicolus ponticus, and S. sprattus decreased in the order gill > gonad > muscle, gonad > gill > muscle, and gill > gonad > muscle, respectively, for the three species. When metal concentrations of fish tissues were compared between fish gender, there were only statistical differences in the gonads of the studied fish species (p < 0.05). The present study demonstrated that the metals have different correlations with condition factor (CF) and gonadosomatic index (GSI) of the fish species. Cr showed statistically important positive correlation to the GSI in male T. mediterraneus. Co showed statistically important positive correlation to CF in female E. encrasicolus ponticus, and also Co and Cd showed correlation to CF in male T. mediterraneus. Cd concentrations in the muscle tissues of the fish species were above the maximum acceptable concentration for human consumption. PMID:24193046

  4. Effects of exposure to seismic airgun use on hearing of three fish species

    NASA Astrophysics Data System (ADS)

    Popper, Arthur N.; Smith, Michael E.; Cott, Peter A.; Hanna, Bruce W.; MacGillivray, Alexander O.; Austin, Melanie E.; Mann, David A.

    2005-06-01

    Seismic airguns produce considerable amounts of acoustic energy that have the potential to affect marine life. This study investigates the effects of exposure to a 730 in.3 airgun array on hearing of three fish species in the Mackenzie River Delta, the northern pike (Esox lucius), broad whitefish (Coregonus nasus), and lake chub (Couesius plumbeus). Fish were placed in cages in the 1.9 m of water and exposed to five or 20 airgun shots, while controls were placed in the same cage but without airgun exposure. Hearing in both exposed and control fish were then tested using the auditory brainstem response (ABR). Threshold shifts were found for exposed fish as compared to controls in the northern pike and lake chub, with recovery within 24 hours of exposure, while there was no threshold shift in the broad whitefish. It is concluded that these three species are not likely to be substantially impacted by exposure to an airgun array used in a river seismic survey. Care must be taken, however, in extrapolation to other species and to fishes exposed to airguns in deeper water or where the animals are exposed to a larger number of airgun shots over a longer period of time. .

  5. Do spates determine species? The influence of altered hydrology on stream fish assemblages.

    NASA Astrophysics Data System (ADS)

    Helms, B.; Schoonover, J.; Feminella, J.

    2005-05-01

    We investigated the influence of short-term hydrologic regimes on fish assemblages in 18 watersheds (500-2500 ha, Lower Piedmont ecoregion) along an urbanization gradient north of Columbus, Georgia, USA. We monitored stream hydrology continuously with pressure-transducers for 1 y and also quantified fish and habitat variables in representative 100-m reaches in each watershed. We characterized each stream's hydrograph using a suite of 44 metrics, broadly characterized as Magnitude, Frequency, Duration, Flashiness, or Predictability measures. Fish species richness, diversity, health, proportion of lithophilic spawners (sensitive guild) and overall assemblage integrity (IBI) declined with an increasing number of spates (Frequency). In addition, the proportion of sunfish species, primarily Lepomis auritus and L. macrochirus, increased with increasing numbers of spates, suggesting that hydrologically altered streams are numerically dominated by tolerant species. Overall, Frequency measures were the most informative of all hydrological predictors, suggesting spate frequency is potentially a strong driver of fish assemblage structure. Interestingly, not all watersheds exhibiting a high number of spates were highly urbanized, thus factors other than % impervious surface, which was highest in the urban watersheds, influence the hydrologic regime. Overall, our data suggest a functional connection between land use change, altered stream hydrology, and shifts in fish assemblages.

  6. Resilience of predators to fishing pressure on coral patch reefs

    USGS Publications Warehouse

    Schroeder, R.E.; Parrish, J.D.

    2005-01-01

    Numbers and biomass of piscivorous fish and their predation on other fish may often be high in undisturbed coral reef communities. The effects of such predation have sometimes been studied by removal of piscivores (either experimentally or by fishermen). Such perturbations have usually involved removal of large, highly vulnerable, mobile piscivores that are often actively sought in fisheries. The effects of fishing on smaller, demersal, semi-resident piscivores have been little studied. We studied such effects on the fish communities of patch reefs at Midway atoll by experimentally removing major resident, demersal, piscivorous fishes. First, four control reefs and four experimental reefs were selected, their dimensions and habitats mapped, and their visible fish communities censused repeatedly over 1 year. Census of all control and experimental reefs was continued for the following 39 months, during which known piscivores were collected repeatedly by hand spearing. Records were kept of catch and effort to calculate CPUE as an index of predator density. Spearfishing on the experimental reefs removed 2504 piscivorous fish from 12 families and 43 taxa (mostly species). The species richness of the catch did not show an overall change over the duration of the experiment. Spearman rank correlation analysis showed some unexpected positive correlations for density in numbers and biomass of major fished piscivorous groups (especially lizardfish) over the experiment. Only two relatively minor fished piscivorous taxa declined in abundance over the experiment, while the overall abundance of piscivores increased. Visual censuses of fish on the experimental reefs also failed to show reduction of total piscivores over the full experimental period. No significant trend in the abundance of lizardfish censused over the full period was apparent on any of the control reefs. The high resilience of piscivores on these experimental reefs to relatively intense fishing pressure could

  7. Fish species from a micro-tidal delta in the Caribbean Sea.

    PubMed

    Correa-Herrera, T; Jiménez-Segura, L F; Barletta, M

    2016-07-01

    A total of 66 fish species belonging to 32 families were recorded between November 2012 and April 2014 in the southern arm of the delta to the Atrato River. Total length (LT ; range: 1·7-48 cm), total mass (MT ), LT and MT relationships (b values ranged from 1·8 to 3·7, mostly with negative allometric growth), and LT frequency (for 25 species) were estimated for freshwater, estuarine and marine species. LT and MT of Porichthys pauciradiatus and Membras argentea are given for the first time and maximum LT records for 14 species exceed those in the literature. PMID:27401485

  8. Global mismatch between species richness and vulnerability of reef fish assemblages.

    PubMed

    Parravicini, Valeriano; Villéger, Sébastien; McClanahan, Tim R; Arias-González, Jesus Ernesto; Bellwood, David R; Belmaker, Jonathan; Chabanet, Pascale; Floeter, Sergio R; Friedlander, Alan M; Guilhaumon, François; Vigliola, Laurent; Kulbicki, Michel; Mouillot, David

    2014-09-01

    The impact of anthropogenic activity on ecosystems has highlighted the need to move beyond the biogeographical delineation of species richness patterns to understanding the vulnerability of species assemblages, including the functional components that are linked to the processes they support. We developed a decision theory framework to quantitatively assess the global taxonomic and functional vulnerability of fish assemblages on tropical reefs using a combination of sensitivity to species loss, exposure to threats and extent of protection. Fish assemblages with high taxonomic and functional sensitivity are often exposed to threats but are largely missed by the global network of marine protected areas. We found that areas of high species richness spatially mismatch areas of high taxonomic and functional vulnerability. Nevertheless, there is strong spatial match between taxonomic and functional vulnerabilities suggesting a potential win-win conservation-ecosystem service strategy if more protection is set in these locations. PMID:24985880

  9. A new fish species of the subfamily Serraninae (Perciformes, Serranidae) from the Philippines.

    PubMed

    Williams, Jeffrey T; Carpenter, Kent E

    2015-01-01

    A new species of serranine fish is described from the Philippine Islands. A single specimen of a new species, Chelidoperca santosi, captured by fishermen working in Palawan waters was discovered in the public fish market in Iloilo City, Panay, Philippines. Two additional specimens of the new species, also from the Philippines, were subsequently discovered in the collections of the Museum Victoria, Australia. The new species is currently known only from the Philippines and is characterized by its distinctive coloration with a row of four small dark spots on the snout (two in front of each eye) and two dark spots on the chin (one on each side of the symphysis of the dentaries), a white anal fin with six large yellow spots separated by broad white interspaces and a narrow yellow distal border, caudal fin with narrow yellow bars and a yellowish distal margin and no dark spots, and a combination of meristic and morphological characters.  PMID:25661613

  10. Current knowledge on the photoneuroendocrine regulation of reproduction in temperate fish species.

    PubMed

    Migaud, H; Davie, A; Taylor, J F

    2010-01-01

    Seasonality is an important adaptive trait in temperate fish species as it entrains or regulates most physiological events such as reproductive cycle, growth profile, locomotor activity and key life-stage transitions. Photoperiod is undoubtedly one of the most predictable environmental signals that can be used by most living organisms including fishes in temperate areas. This said, however, understanding of how such a simple signal can dictate the time of gonadal recruitment and spawning, for example, is a complex task. Over the past few decades, many scientists attempted to unravel the roots of photoperiodic signalling in teleosts by investigating the role of melatonin in reproduction, but without great success. In fact, the hormone melatonin is recognized as the biological time-keeping hormone in fishes mainly due to the fact that it reflects the seasonal variation in daylength across the whole animal kingdom rather than the existence of direct evidences of its role in the entrainment of reproduction in fishes. Recently, however, some new studies clearly suggested that melatonin interacts with the reproductive cascade at a number of key steps such as through the dopaminergic system in the brain or the synchronization of the final oocyte maturation in the gonad. Interestingly, in the past few years, additional pathways have become apparent in the search for a fish photoneuroendocrine system including the clock-gene network and kisspeptin signalling and although research on these topics are still in their infancy, it is moving at great pace. This review thus aims to bring together the current knowledge on the photic control of reproduction mainly focusing on seasonal temperate fish species and shape the current working hypotheses supported by recent findings obtained in teleosts or based on knowledge gathered in mammalian and avian species. Four of the main potential regulatory systems (light perception, melatonin, clock genes and kisspeptin) in fish reproduction

  11. Mercury Contamination in an Indicator Fish Species from Andean Amazonian Rivers Affected by Petroleum Extraction.

    PubMed

    Webb, Jena; Coomes, Oliver T; Mainville, Nicolas; Mergler, Donna

    2015-09-01

    Elevated mercury (Hg) concentrations in fish from Amazonia have been associated with gold-mining, hydroelectric dams and deforestation but few studies consider the role of petroleum extraction. Hg levels were determined in fish samples collected in three river basins in Ecuador and Peru with contrasting petroleum exploitation and land-use characteristics. The non-migratory, piscivorous species, Hoplias malabaricus, was used as a bioindicator. The rate of Hg increase with body weight for this species was significantly higher on the Corrientes River, near the site of a recent oil spill, than on the other two rivers. In the absence of substantial deforestation and other anthropogenic sources in the Corrientes River basin, this finding suggests that oil contamination in Andean Amazonia may have a significant impact on Hg levels in fish. PMID:26205230

  12. Future land use threats to range-restricted fish species in the United States

    DOE PAGESBeta

    Januchowski-Hartley, Stephanie R.; Holtz, Lauren A.; Martinuzzi, Sebastian; McIntyre, Peter B.; Radeloff, Volker C.; Pracheil, Brenda M.

    2016-03-04

    Land use change is one major threat to freshwater biodiversity, and land use change scenarios can help to assess threats from future land use change, thereby guiding proactive conservation decisions. Furthermore, our goal was to identify which range-restricted freshwater fish species are most likely to be affected by land use change and to determine where threats to these species from future land use change in the conterminous United States are most pronounced.

  13. Vast assembly of vocal marine mammals from diverse species on fish spawning ground.

    PubMed

    Wang, Delin; Garcia, Heriberto; Huang, Wei; Tran, Duong D; Jain, Ankita D; Yi, Dong Hoon; Gong, Zheng; Jech, J Michael; Godø, Olav Rune; Makris, Nicholas C; Ratilal, Purnima

    2016-03-17

    Observing marine mammal (MM) populations continuously in time and space over the immense ocean areas they inhabit is challenging but essential for gathering an unambiguous record of their distribution, as well as understanding their behaviour and interaction with prey species. Here we use passive ocean acoustic waveguide remote sensing (POAWRS) in an important North Atlantic feeding ground to instantaneously detect, localize and classify MM vocalizations from diverse species over an approximately 100,000 km(2) region. More than eight species of vocal MMs are found to spatially converge on fish spawning areas containing massive densely populated herring shoals at night-time and diffuse herring distributions during daytime. We find the vocal MMs divide the enormous fish prey field into species-specific foraging areas with varying degrees of spatial overlap, maintained for at least two weeks of the herring spawning period. The recorded vocalization rates are diel (24 h)-dependent for all MM species, with some significantly more vocal at night and others more vocal during the day. The four key baleen whale species of the region: fin, humpback, blue and minke have vocalization rate trends that are highly correlated to trends in fish shoaling density and to each other over the diel cycle. These results reveal the temporospatial dynamics of combined multi-species MM foraging activities in the vicinity of an extensive fish prey field that forms a massive ecological hotspot, and would be unattainable with conventional methodologies. Understanding MM behaviour and distributions is essential for management of marine ecosystems and for accessing anthropogenic impacts on these protected marine species. PMID:26934221

  14. 78 FR 1200 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-08

    ...Notice is hereby given that NMFS has received an application for a permit for scientific purposes and to enhance the propagation and survival of a listed species under the Endangered Species Act of 1973, as amended (ESA), from the California Department of Fish and Game (CDFG) and PacifiCorp for a 10 year period. As part of this permit application, the CDFG has submitted a draft HGMP. The HGMP......

  15. Predicting assemblages and species richness of endemic fish in the upper Yangtze River.

    PubMed

    He, Yongfeng; Wang, Jianwei; Lek-Ang, Sithan; Lek, Sovan

    2010-09-01

    The present work describes the ability of two modeling methods, Classification and Regression Tree (CART) and Random Forest (RF), to predict endemic fish assemblages and species richness in the upper Yangtze River, and then to identify the determinant environmental factors contributing to the models. The models included 24 predictor variables and 2 response variables (fish assemblage and species richness) for a total of 46 site units. The predictive quality of the modeling approaches was judged with a leave-one-out validation procedure. There was an average success of 60.9% and 71.7% to assign each site unit to the correct assemblage of fish, and 73% and 84% to explain the variance in species richness, by using CART and RF models, respectively. RF proved to be better than CART in terms of accuracy and efficiency in ecological applications. In any case, the mixed models including both land cover and river characteristic variables were more powerful than either individual one in explaining the endemic fish distribution pattern in the upper Yangtze River. For instance, altitude, slope, length, discharge, runoff, farmland and alpine and sub-alpine meadow played important roles in driving the observed endemic fish assemblage structure, while farmland, slope grassland, discharge, runoff, altitude and drainage area in explaining the observed patterns of endemic species richness. Therefore, the various effects of human activity on natural aquatic ecosystems, in particular, the flow modification of the river and the land use changes may have a considerable effect on the endemic fish distribution patterns on a regional scale. PMID:20541238

  16. 77 FR 24466 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-24

    ... provide a foundation for understanding these populations' life histories--the knowledge of which is... prey to juvenile wild Chinook during their neritic life history stage. The KWIAHT proposes to use beach... fish species composition, distribution, growth, condition, pathology, toxicology, and life...

  17. 76 FR 71315 - Endangered and Threatened Species; Take of Anadromous Fish

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-11-17

    ... National Oceanic and Atmospheric Administration RIN 0648-XA824 Endangered and Threatened Species; Take of Anadromous Fish AGENCY: National Marine Fisheries Service (NMFS), National Oceanic and ] Atmospheric... chemistry (e.g., temperature, dissolved oxygen, nutrients, pathogens); (2) water level and velocity;...

  18. Metal speciation in sediment and their bioaccumulation in fish species of three urban rivers in Bangladesh.

    PubMed

    Islam, Md Saiful; Ahmed, Md Kawser; Raknuzzaman, Mohammad; Habibullah-Al-Mamun, Md; Masunaga, Shigeki

    2015-01-01

    Six trace metals (chromium [Cr], nickel [Ni], copper [Cu], arsenic [As], cadmium [Cd] and lead [Pb]) were measured in sediments and soft tissues of three commonly consumed fish species (Channa punctatus, Heteropneustes fossilis, and Trichogaster fasciata) collected from three urban rivers around Dhaka City, Bangladesh. The abundance of total metals in sediments varied in the decreasing order of Cr > Ni > Pb > Cu > As > Cd. Sequential extraction tests showed that the studied metals were predominantly associated with the residual fraction followed by the organically bound phase. The range of metal concentration in fish species were as follows: Cr (0.75-4.8), Ni (0.14-3.1), Cu (1.1-7.2), As (0.091-0.53), Cd (0.008-0.13), and Pb (0.052-2.7 mg/kg wet weight [ww]). The rank of biota-sediment accumulation factor for fish species were in the descending order of Cu > As > Pb > Ni > Cr > Cd. Metal concentrations in fish exceeded the international permissible standards suggesting that these species are not safe for human consumption. PMID:25213477

  19. Ecological tracers reveal resource convergence among prey fish species in a large lake ecosystem

    USGS Publications Warehouse

    Paterson, Gord; Rush, Scott A.; Arts, Michael T.; Drouillard, Ken G.; Haffner, G. Doug; Johnson, Tim B.; Lantry, Brian F.; Hebert, Craig E.; McGoldrick, Daryl J.; Backus, Sean M.; Fisk, Aaron T.

    2014-01-01

    5. These results indicate a temporal convergence of the food niche, whereas food partitioning has historically supported the coexistence of prey fish species in Lake Ontario. This convergence is consistent with changes in food-web processes associated with the invasion of dreissenid mussels.

  20. METAL TOXICITY TO EMBRYOS AND LARVAE OF EIGHT SPECIES OF FRESHWATER FISH--II: COPPER

    EPA Science Inventory

    Fish larvae and early juveniles of all species tested (brook trout, rainbow trout, brown trout, lake trout, northern pike, white sucker, herring and smallmouth bass) were more sensitive to copper than the embryos. Embryo survival was affected only at the higher concentrations tes...

  1. 77 FR 61562 - Atlantic Highly Migratory Species; 2013 Atlantic Shark Commercial Fishing Season

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-10

    ... accompanied the 2011 shark quota specifications rule (75 FR 76302; December 8, 2010). Thus, NMFS proposes to.... Shark stocks that are overfished, have overfishing occurring, or that have an unknown stock status, or... Species; 2013 Atlantic Shark Commercial Fishing Season AGENCY: National Marine Fisheries Service...

  2. 75 FR 57240 - Atlantic Highly Migratory Species; 2011 Commercial Fishing Season and Adaptive Management...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-20

    ...This proposed rule would establish opening dates and adjust quotas for the 2011 fishing season for sandbar sharks, non-sandbar large coastal sharks (LCS), small coastal sharks (SCS), and pelagic sharks. Quotas will be adjusted based on the framework established in Amendment 2 to the 2006 Consolidated Highly Migratory Species Fishery Management Plan, which requires adjustments for any over-......

  3. 76 FR 72678 - Atlantic Highly Migratory Species; Exempted Fishing, Scientific Research, Display, and Chartering...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-11-25

    ...NMFS announces its intent to issue Exempted Fishing Permits (EFPs), Scientific Research Permits (SRPs), Display Permits, Letters of Acknowledgment (LOAs), and Chartering Permits for the collection of Atlantic Highly Migratory Species (HMS) in 2012. In general, EFPs and related permits would authorize collection of a limited number of tunas, swordfish, billfishes, and sharks from Federal waters......

  4. Introduced species and abiotic factors affect longitudinal variation in small fish assemblages in the Wind River watershed, Wyoming

    USGS Publications Warehouse

    Lionberger, P.S.; Hubert, W.A.

    2007-01-01

    We assessed longitudinal variation in small fish assemblages in the Wind River watershed upstream from Boysen Reservoir, Wyoming and into the reservoir. Twenty-six species were found in the study area, and 12 of the species were believed to have been introduced since settlement by Europeans. Additions and losses of fish species occurred with downstream progression, especially the addition of introduced species. Introduced species increased from 25% of the total number of species in the upper-most river segment (31.5-35.3 km upstream from the reservoir), to 46% in the river segment immediately upstream from the reservoir, to 48% in the reservoir. The most abundant species in the riverine portion of the watershed was the introduced sand shiner (Notropis stramineus). The results suggest that cyprinid species introduced to the upstream watershed and Boysen Reservoir are influencing small fish assemblages upstream from the reservoir and may be impacting native fishes, particularly native cyprinids.

  5. Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding.

    PubMed

    Evans, Nathan T; Olds, Brett P; Renshaw, Mark A; Turner, Cameron R; Li, Yiyuan; Jerde, Christopher L; Mahon, Andrew R; Pfrender, Michael E; Lamberti, Gary A; Lodge, David M

    2016-01-01

    Freshwater fauna are particularly sensitive to environmental change and disturbance. Management agencies frequently use fish and amphibian biodiversity as indicators of ecosystem health and a way to prioritize and assess management strategies. Traditional aquatic bioassessment that relies on capture of organisms via nets, traps and electrofishing gear typically has low detection probabilities for rare species and can injure individuals of protected species. Our objective was to determine whether environmental DNA (eDNA) sampling and metabarcoding analysis can be used to accurately measure species diversity in aquatic assemblages with differing structures. We manipulated the density and relative abundance of eight fish and one amphibian species in replicated 206-L mesocosms. Environmental DNA was filtered from water samples, and six mitochondrial gene fragments were Illumina-sequenced to measure species diversity in each mesocosm. Metabarcoding detected all nine species in all treatment replicates. Additionally, we found a modest, but positive relationship between species abundance and sequencing read abundance. Our results illustrate the potential for eDNA sampling and metabarcoding approaches to improve quantification of aquatic species diversity in natural environments and point the way towards using eDNA metabarcoding as an index of macrofaunal species abundance. PMID:26032773

  6. Arsenic Toxicity to Juvenile Fish: Effects of Exposure Route, Arsenic Speciation, and Fish Species

    EPA Science Inventory

    Arsenic toxicity to juvenile rainbow trout and fathead minnows was evaluated in 28-day tests using both dietborne and waterborne exposures, both inorganic and organic arsenic species, and both a live diet and an arsenic-spiked pellet diet. Effects of inorganic arsenic on rainbow...

  7. MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

    PubMed Central

    Miya, M.; Sato, Y.; Fukunaga, T.; Sado, T.; Poulsen, J. Y.; Sato, K.; Minamoto, T.; Yamamoto, S.; Yamanaka, H.; Araki, H.; Kondoh, M.; Iwasaki, W.

    2015-01-01

    We developed a set of universal PCR primers (MiFish-U/E) for metabarcoding environmental DNA (eDNA) from fishes. Primers were designed using aligned whole mitochondrial genome (mitogenome) sequences from 880 species, supplemented by partial mitogenome sequences from 160 elasmobranchs (sharks and rays). The primers target a hypervariable region of the 12S rRNA gene (163–185 bp), which contains sufficient information to identify fishes to taxonomic family, genus and species except for some closely related congeners. To test versatility of the primers across a diverse range of fishes, we sampled eDNA from four tanks in the Okinawa Churaumi Aquarium with known species compositions, prepared dual-indexed libraries and performed paired-end sequencing of the region using high-throughput next-generation sequencing technologies. Out of the 180 marine fish species contained in the four tanks with reference sequences in a custom database, we detected 168 species (93.3%) distributed across 59 families and 123 genera. These fishes are not only taxonomically diverse, ranging from sharks and rays to higher teleosts, but are also greatly varied in their ecology, including both pelagic and benthic species living in shallow coastal to deep waters. We also sampled natural seawaters around coral reefs near the aquarium and detected 93 fish species using this approach. Of the 93 species, 64 were not detected in the four aquarium tanks, rendering the total number of species detected to 232 (from 70 families and 152 genera). The metabarcoding approach presented here is non-invasive, more efficient, more cost-effective and more sensitive than the traditional survey methods. It has the potential to serve as an alternative (or complementary) tool for biodiversity monitoring that revolutionizes natural resource management and ecological studies of fish communities on larger spatial and temporal scales. PMID:26587265

  8. Concentration of arsenic in water, sediments and fish species from naturally contaminated rivers.

    PubMed

    Rosso, Juan José; Schenone, Nahuel F; Pérez Carrera, Alejo; Fernández Cirelli, Alicia

    2013-04-01

    Arsenic (As) may occur in surface freshwater ecosystems as a consequence of both natural contamination and anthropogenic activities. In this paper, As concentrations in muscle samples of 10 fish species, sediments and surface water from three naturally contaminated rivers in a central region of Argentina are reported. The study area is one of the largest regions in the world with high As concentrations in groundwater. However, information of As in freshwater ecosystems and associated biota is scarce. An extensive spatial variability of As concentrations in water and sediments of sampled ecosystems was observed. Geochemical indices indicated that sediments ranged from mostly unpolluted to strongly polluted. The concentration of As in sediments averaged 6.58 μg/g ranging from 0.23 to 59.53 μg/g. Arsenic in sediments barely followed (r = 0.361; p = 0.118) the level of contamination of water. All rivers showed high concentrations of As in surface waters, ranging from 55 to 195 μg/L. The average concentration of As in fish was 1.76 μg/g. The level of contamination with As differed significantly between species. Moreover, the level of bioaccumulation of As in fish species related to the concentration of As in water and sediments also differed between species. Whilst some fish species seemed to be able to regulate the uptake of this metalloid, the concentration of As in the large catfish Rhamdia quelen mostly followed the concentration of As in abiotic compartments. The erratic pattern of As concentrations in fish and sediments regardless of the invariable high levels in surface waters suggests the existence of complex biogeochemical processes behind the distribution patterns of As in these naturally contaminated ecosystems. PMID:23179469

  9. Comparisons of fish species traits from small streams to large rivers

    USGS Publications Warehouse

    Goldstein, R.M.; Meador, M.R.

    2004-01-01

    To examine the relations between fish community function and stream size, we classified 429 lotic freshwater fish species based on multiple categories within six species traits: (1) substrate preference, (2) geomorphic preference, (3) trophic ecology, (4) locomotion morphology, (5) reproductive strategy, and (6) stream size preference. Stream size categories included small streams, small, medium, and large rivers, and no size preference. The frequencies of each species trait category were determined for each stream size category based on life history information from the literature. Cluster analysis revealed the presence of covarying groups of species trait categories. One cluster (RUN) included the traits of planktivore and herbivore feeding ecology, migratory reproductive behavior and broadcast spawning, preferences for main-channel habitats, and a lack of preferences for substrate type. The frequencies of classifications for the RUN cluster varied significantly across stream size categories (P = 0.009), being greater for large rivers than for small streams and rivers. Another cluster (RIFFLE) included the traits of invertivore feeding ecology, simple nester reproductive behavior, a preference for riffles, and a preference for bedrock, boulder, and cobble-rubble substrate. No significant differences in the frequency of classifications among stream size categories were detected for the RIFFLE cluster (P = 0.328). Our results suggest that fish community function is structured by large-scale differences in habitat and is different for large rivers than for small streams and rivers. Our findings support theoretical predictions of variation in species traits among stream reaches based on ecological frameworks such as landscape filters, habitat templates, and the river continuum concept. We believe that the species trait classifications presented here provide an opportunity for further examination of fish species' relations to physical, chemical, and biological factors

  10. Spatial heterogeneity in fishing creates de facto refugia for endangered Celtic Sea elasmobranchs.

    PubMed

    Shephard, Samuel; Gerritsen, Hans; Kaiser, Michel J; Reid, David G

    2012-01-01

    The life history characteristics of some elasmobranchs make them particularly vulnerable to fishing mortality; about a third of all species are listed by the IUCN as Threatened or Near Threatened. Marine Protected Areas (MPAs) have been suggested as a tool for conservation of elasmobranchs, but they are likely to be effective only if such populations respond to fishing impacts at spatial-scales corresponding to MPA size. Using the example of the Celtic Sea, we modelled elasmobranch biomass (kg h(-1)) in fisheries-independent survey hauls as a function of environmental variables and 'local' (within 20 km radius) fishing effort (h y(-1)) recorded from Vessel Monitoring Systems data. Model selection using AIC suggested strongest support for linear mixed effects models in which the variables (i) fishing effort, (ii) geographic location and (iii) demersal fish assemblage had approximately equal importance in explaining elasmobranch biomass. In the eastern Celtic Sea, sampling sites that occurred in the lowest 10% of the observed fishing effort range recorded 10 species of elasmobranch including the critically endangered Dipturus spp. The most intensely fished 10% of sites had only three elasmobranch species, with two IUCN listed as Least Concern. Our results suggest that stable spatial heterogeneity in fishing effort creates de facto refugia for elasmobranchs in the Celtic Sea. However, changes in the present fisheries management regime could impair the refuge effect by changing fisher's behaviour and displacing effort into these areas. PMID:23166635

  11. Assessment of fish assemblages in coastal lagoon habitats: Effect of sampling method

    NASA Astrophysics Data System (ADS)

    Franco, A.; Pérez-Ruzafa, A.; Drouineau, H.; Franzoi, P.; Koutrakis, E. T.; Lepage, M.; Verdiell-Cubedo, D.; Bouchoucha, M.; López-Capel, A.; Riccato, F.; Sapounidis, A.; Marcos, C.; Oliva-Paterna, F. J.; Torralva-Forero, M.; Torricelli, P.

    2012-10-01

    The structure of fish assemblages accounted for by different sampling methods (namely fyke net, seine nets, visual census) applied to vegetated and unvegetated lagoon habitats was investigated in terms of species composition, functional groups (ecological and trophic guilds), and fish size distribution. Significant differences were detected among methods, even among similar ones (seine nets). Visual census and fyke net detected more easily pelagic species, allowing the sampling of larger fish, whereas seine nets targeted more efficiently benthic-demersal species, with a dominance of 2-10 cm size classes in the fish catches. Differences were detected also among habitats, reflecting the different fish assemblages associated to vegetated and unvegetated habitats in coastal lagoons and transitional waters. However a different ability of discriminating between habitat-associated fish assemblages was recorded for the sampling methods. The different selectivity and functioning of the tested sampling methods confirm the importance of considering the targeted scale at which the research is being carried out, as well as the method that will be used to assess the ecological status of lagoon fish assemblages when choosing the most appropriate sampling method. A cross-validation of fish sampling methodologies in transitional waters is necessary to cope with the mandatory of the Water Framework Directive of standardization and comparability of monitoring methods.

  12. Pollution Problem in River Kabul: Accumulation Estimates of Heavy Metals in Native Fish Species

    PubMed Central

    Ahmad, Habib; Yousafzai, Ali Muhammad; Siraj, Muhammad; Ahmad, Rashid; Ahmad, Israr; Nadeem, Muhammad Shahid; Ahmad, Waqar; Akbar, Nazia; Muhammad, Khushi

    2015-01-01

    The contamination of aquatic systems with heavy metals is affecting the fish population and hence results in a decline of productivity rate. River Kabul is a transcountry river originating at Paghman province in Afghanistan and inters in Khyber Pakhtunkhwa province of Pakistan and it is the major source of irrigation and more than 54 fish species have been reported in the river. Present study aimed at the estimation of heavy metals load in the fish living in River Kabul. Heavy metals including chromium, nickel, copper, zinc, cadmium, and lead were determined through atomic absorption spectrophotometer after tissue digestion by adopting standard procedures. Concentrations of these metals were recorded in muscles and liver of five native fish species, namely, Wallago attu, Aorichthys seenghala, Cyprinus carpio, Labeo dyocheilus, and Ompok bimaculatus. The concentrations of chromium, nickel, copper, zinc, and lead were higher in both of the tissues, whereas the concentration of cadmium was comparatively low. However, the concentration of metals was exceeding the RDA (Recommended Dietary Allowance of USA) limits. Hence, continuous fish consumption may create health problems for the consumers. The results of the present study are alarming and suggest implementing environmental laws and initiation of a biomonitoring program of the river. PMID:26339622

  13. Marine protected areas facilitate parasite populations among four fished host species of central Chile.

    PubMed

    Wood, Chelsea L; Micheli, Fiorenza; Fernández, Miriam; Gelcich, Stefan; Castilla, Juan Carlos; Carvajal, Juan

    2013-11-01

    1. Parasites comprise a substantial proportion of global biodiversity and exert important ecological influences on hosts, communities and ecosystems, but our knowledge of how parasite populations respond to human impacts is in its infancy. 2. Here, we present the results of a natural experiment in which we used a system of highly successful marine protected areas and matched open-access areas in central Chile to assess the influence of fishing-driven biodiversity loss on parasites of exploited fish and invertebrate hosts. We measured the burden of gill parasites for two reef fishes (Cheilodactylus variegatus and Aplodactylus punctatus), trematode parasites for a keyhole limpet (Fissurella latimarginata), and pinnotherid pea crab parasites for a sea urchin (Loxechinus albus). We also measured host density for all four hosts. 3. We found that nearly all parasite species exhibited substantially greater density (# parasites m(-2)) in protected than in open-access areas, but only one parasite species (a gill monogenean of C. variegatus) was more abundant within hosts collected from protected relative to open-access areas. 4. These data indicate that fishing can drive declines in parasite abundance at the parasite population level by reducing the availability of habitat and resources for parasites, but less commonly affects the abundance of parasites at the infrapopulation level (within individual hosts). 5. Considering the substantial ecological role that many parasites play in marine communities, fishing and other human impacts could exert cryptic but important effects on marine community structure and ecosystem functioning via reductions in parasite abundance. PMID:23855822

  14. Nutritional evaluation of commercially important fish species of Lakshadweep archipelago, India.

    PubMed

    Dhaneesh, Kottila Veettil; Noushad, Kunnamgalam Mohammed; Kumar, Thipramalai Thankappan Ajith

    2012-01-01

    Estimation of nutrition profile of edible fishes is essential and thus a bio-monitoring study was carried out to find out the nutritional composition of commonly available fishes in Agatti Island water of Lakshadweep Sea. Protein, carbohydrate, lipid, ash, vitamin, amino acid and fatty acid composition in the muscle of ten edible fish species were studied. Proximate analysis revealed that the protein, carbohydrate, lipid and ash contents were high in Thunnus albacares (13.69%), Parupeneus bifasciatus (6.12%), Hyporhamphus dussumieri (6.97%) and T. albacares (1.65%), respectively. Major amino acids were lysine, leucine and methionine, registering 2.84-4.56%, 2.67-4.18% and 2.64-3.91%, respectively. Fatty acid compositions ranged from 31.63% to 38.97% saturated (SFA), 21.99-26.30% monounsaturated (MUFAs), 30.32-35.11% polyunsaturated acids (PUFAs) and 2.86-7.79% branched fatty acids of the total fatty acids. The ω-3 and ω-6 PUFAs were ranged 13.05-21.14% and 6.88-9.82% of the total fatty acids, respectively. Hence, the fishes of Lakshadweep Sea are highly recommended for consumption, since these fishes are highly enriched with nutrition. The results can be used as a baseline data for comparing the various nutritional profiles of fishes in future. PMID:23029011

  15. Species assemblages of pelagic fish embryos in the southern North Sea between 1984 and 2000

    NASA Astrophysics Data System (ADS)

    von Westernhagen, Hein; Dethlefsen, Volkert; Bade, Tim; Wosniok, Werner

    2002-02-01

    The occurrence and abundance of the pelagic eggs of southern North Sea spring-spawning fish were analysed between 1984 and 2000. Species number varied between six (1986) and 14 (1999) and was positively correlated with sea surface temperature. With one exception, dab eggs were always the most abundant and usually highly dominant. Ranking of species depended on temperature, but no significant differences in ranking between years was discernible. Although with the increase in temperature in the 1990s a change in species assemblage was evident [species belonging to the boreal-Mediterranean (Lusitanian) group became more apparent in the species assemblage] this did not lead to an increased species diversity (Shannon Index) or a change in other community parameters. It appears that the recent developments regarding spawning stock biomass of commercial North Sea fish is reflected in the declining egg abundance of the respective commercial and larger species (i.e. cod, flounder, plaice) and an increase in abundance of the eggs of small species (i.e. long rough dab, rockling) over the years.

  16. Tumor suppressor gene P53 in fish species as a target for genotoxic effects monitoring

    SciTech Connect

    Kusser, W.C.; Brand, D.; Glickman, B.W.; Cretney, W.

    1995-12-31

    Analysis of environmentally induced molecular changes in DNA from fish was initiated with a study of tumor suppressor gene p53. This gene was chosen because of the high number of documented mutations in p53 from humans and their relevance in tumorigenesis. Bottom-feeding flatfish (e.g. English sole, Pleuronectes vetulus) and members of the salmonid family (e.g. rainbow trout, Oncorhynchus mykiss and chinook salmon, O. tschaaytsha) were chosen, because they are widespread and of commercial and recreational importance. The studies include the use of histopathological, biochemical, and molecular genetic tools in aquatic systems. The authors are currently examining the deposition of DNA damage and mutation in the p53 gene in fish. Parallel histopathology of liver showed idiopathic liver lesions that were strongly dependent on location of capture (0.01 < p(X{sup 2} 0.05, 2 > 6.89) < 0.025) with a prevalence of 30% for fish collected from the vicinity of pulp mills. To assess DNA damage and mutation analysis, DNA was extracted from fish liver. Polymerase chain reaction (PCR) and DNA sequencing of the p53 gene was performed for rainbow trout, chinook and sockeye salmon, O. nerka. Southern blotting with a labeled p53 probe from rainbow trout was performed using genomic DNA from various teleost fish species. The presence of p53 could be shown in all fish species examined, including salmonids and sentinel species for environmental monitoring like English sole and white sucker (Catostomus commersom). To correlate histopathology with molecular analysis the authors initiated the determination of DNA damage, DNA adducts and mutations in the p53 gene (conserved exons 5 to 9).

  17. Assessing Historical Fish Community Composition Using Surveys, Historical Collection Data, and Species Distribution Models

    PubMed Central

    Labay, Ben; Cohen, Adam E.; Sissel, Blake; Hendrickson, Dean A.; Martin, F. Douglas; Sarkar, Sahotra

    2011-01-01

    Accurate establishment of baseline conditions is critical to successful management and habitat restoration. We demonstrate the ability to robustly estimate historical fish community composition and assess the current status of the urbanized Barton Creek watershed in central Texas, U.S.A. Fish species were surveyed in 2008 and the resulting data compared to three sources of fish occurrence information: (i) historical records from a museum specimen database and literature searches; (ii) a nearly identical survey conducted 15 years earlier; and (iii) a modeled historical community constructed with species distribution models (SDMs). This holistic approach, and especially the application of SDMs, allowed us to discover that the fish community in Barton Creek was more diverse than the historical data and survey methods alone indicated. Sixteen native species with high modeled probability of occurrence within the watershed were not found in the 2008 survey, seven of these were not found in either survey or in any of the historical collection records. Our approach allowed us to more rigorously establish the true baseline for the pre-development fish fauna and then to more accurately assess trends and develop hypotheses regarding factors driving current fish community composition to better inform management decisions and future restoration efforts. Smaller, urbanized freshwater systems, like Barton Creek, typically have a relatively poor historical biodiversity inventory coupled with long histories of alteration, and thus there is a propensity for land managers and researchers to apply inaccurate baseline standards. Our methods provide a way around that limitation by using SDMs derived from larger and richer biodiversity databases of a broader geographic scope. Broadly applied, we propose that this technique has potential to overcome limitations of popular bioassessment metrics (e.g., IBI) to become a versatile and robust management tool for determining status of

  18. Differential Hepatic Metal and Metallothionein Levels in Three Feral Fish Species along a Metal Pollution Gradient

    PubMed Central

    Bervoets, Lieven; Knapen, Dries; De Jonge, Maarten; Van Campenhout, Karen; Blust, Ronny

    2013-01-01

    The accumulation of cadmium, copper and zinc and the induction of metallothioneins (MT) in liver of three freshwater fish species was studied. Gudgeon (Gobio gobio), roach (Rutilus rutilus) and perch (Perca fluviatilis) were captured at 6 sampling sites along a cadmium and zinc gradient and one reference site in a tributary of the Scheldt River in Flanders (Belgium). At each site up to 10 individuals per species were collected and analyzed on their general condition factor (K), hepatosomatic index (HSI) and gonadosomatic index (GSI). From each individual fish the liver was dissected and analyzed on Cd, Cu and Zn and MT-content. Although not all species were present at each site, hepatic Cd and Zn levels generally followed the pollution gradient and highest levels were measured in perch, followed by roach and gudgeon. Nevertheless also an effect of site was observed on this order. MT-levels appeared to be the highest in gudgeon although differences with the other species were not very pronounced and depended on the site. Significant relationships were found between hepatic zinc accumulation and MT levels. For each species the ratio MTtheoretical/ MTmeasured was calculated, which gives an indication of the relative capacity to induce MTs and thus immobilize the metals. Perch had the lowest capacity in inducing MTs (highest ratio). Relationships between hepatic metal levels and fish condition indices were absent or very weak. PMID:23556004

  19. Bile acid binding capacity of fish protein hydrolysates from discard species of the West Mediterranean Sea.

    PubMed

    Pérez-Gálvez, Raúl; García-Moreno, Pedro J; Morales-Medina, Rocío; Guadix, Antonio; Guadix, Emilia M

    2015-04-01

    Fish protein hydrolysates (FPH), produced from the six main discard species from the West Mediterranean Sea (sardine, horse mackerel, axillary seabream, bogue, small-spotted catshark and blue whiting) were tested for their bile acid binding capacity. This capacity is directly linked to the ability to inhibit bile reabsorption in the ileum and therefore to lower cholesterol levels in the bloodstream. From each species, FPH were obtained by three different enzymatic treatments employing two serine endoproteases (subtilisin and trypsin) sequentially or in combination. The results show statistically significant differences among the fish species, attaining interesting average values of bile acid binding capacity for blue whiting (27.32% relative to cholestyramine on an equal protein basis) and horse mackerel (27.42% relative to cholestyramine on an equal protein basis). The enzymatic treatments did not significantly affect the ability of a given species to bind bile acids. These results are similar to other protein sources, such as soy protein or casein, of proven hypocholesterolemic effect. It can be concluded that fish protein hydrolysates from these discard species are suitable as ingredients in the formulation of cholesterol-lowering supplements. PMID:25756593

  20. Population and biological parameters of selected fish species from the middle Xingu River, Amazon Basin.

    PubMed

    Camargo, M; Giarrizzo, T; Isaac, V J

    2015-08-01

    This study estimates the main biological parameters, including growth rates, asymptotic length, mortality, consumption by biomass, biological yield, and biomass, for the most abundant fish species found on the middle Xingu River, prior to the construction of the Belo Monte Dam. The specimens collected in experimental catches were analysed with empirical equations and length-based FISAT methods. For the 63 fish species studied, high growth rates (K) and high natural mortality (M) were related to early sexual maturation and low longevity. The predominance of species with short life cycles and a reduced number of age classes, determines high rates of stock turnover, which indicates high productivity for fisheries, and a low risk of overfishing. PMID:26691084

  1. Cadmium and lead in selected tissues of two commercially important fish species from the Adriatic Sea.

    PubMed

    Gaspić, Z Kljaković; Zvonarić, T; Vrgoc, N; Odzak, N; Barić, A

    2002-12-01

    Baseline levels of cadmium and lead were determined in muscle tissue and liver of hake (Merluccius merluccius) and red mullet (Mullus barbatus), two commercially important fish species from the eastern Adriatic. Concentrations of trace metals in liver (Cd: 6-183 microg kg(-1) w. wt. ; Pb: 39-970 microg kg(-1) w. wt.) were within the range of recently published data for the Mediterranean. In the muscle tissue, cadmium concentrations (4.1-29 microg kg(-1) w. wt.) were among the lowest reported values for the Mediterranean, whereas lead levels (49-158 microg kg(-1) w. wt.) were within the range of values reported for various coastal areas of the Mediterranean. Presented data on cadmium and lead content in the studied fish species provide no proof of the general pollution of the Adriatic. Obtained data were tested in relation to fish length. Metal concentrations in liver decreased with the increase in fish size, whereas no significant correlation was found between trace metal levels in the muscle tissue and the length of both species. Relationships between metal concentrations and sex were also tested, but they gave no significant results. A comparison of contaminant concentrations in the edible tissue of hake and red mullet with the Croatian legislation shows that the consumption of their meat is not harmful for humans, not even for the most endangered population from the coastal region. PMID:12448550

  2. Isolation and characterisation of flavobacteria from wild and cultured freshwater fish species in Hungary.

    PubMed

    Varga, Zsuzsanna; Sellyei, Boglárka; Paulus, Petra; Papp, Melitta; Molnár, Kálmán; Székely, Csaba

    2016-03-01

    The objective of this study was to survey the incidence of Flavobacterium columnare in wild and cultured freshwater fish species in Hungary. This bacterium usually causes disease in waters of more than 25 °C temperature. However, with the introduction of intensive fish farming systems, infected fish exposed to stress develop disease signs also at lower temperatures; in addition, the temperature of natural waters rises to the critical level due to global warming. Twenty-five isolates from wild and cultured freshwater fishes were identified as F. columnare by specific PCR, although both the fragment lengths and the results of PCRRFLP genotyping with BsuRI (HaeIII) and RsaI restriction enzymes raised doubts regarding this species classification. Sequencing of the 16S ribosomal RNA gene revealed that 23 isolates belonged to the species F. johnsoniae and two represented Chryseobacterium spp. The isolates were found to have high-level multidrug resistance: all were resistant to ampicillin and polymyxin B, the 23 F. johnsoniae strains to cotrimoxazole, 88% of them to gentamicin, and 72% to chloramphenicol. The majority of the 25 isolates were sensitive to erythromycin (88%), furazolidone (76%), and florfenicol (68%). PMID:26919138

  3. Liquid chromatographic determination of florfenicol in the plasma of multiple species of fish

    USGS Publications Warehouse

    Vue, C.; Schmidt, L.J.; Stehly, G.R.; Gingerich, W.H.

    2002-01-01

    A simple method was developed for determining florfenicol concentration in a small volume (250 mul) of plasma from five phylogenetically diverse species of freshwater fish. Florfenicol was isolated from the plasma matrix through C-18 solid-phase extraction and quantified by reversed-phase high-performance liquid chromatography with UV detection. The accuracy (84-104%), precision (%RSDless than or equal to8), and sensitivity (quantitation limit <30 ng/ml) of the method indicate its usefulness for conducting pharmacokinetic studies on a variety of freshwater fish. Published by Elsevier Science B.V.

  4. Effects of bottom trawling on fish foraging and feeding.

    PubMed

    Johnson, Andrew Frederick; Gorelli, Giulia; Jenkins, Stuart Rees; Hiddink, Jan Geert; Hinz, Hilmar

    2015-01-22

    The effects of bottom trawling on benthic invertebrates include reductions of biomass, diversity and body size. These changes may negatively affect prey availability for demersal fishes, potentially leading to reduced food intake, body condition and yield of fishes in chronically trawled areas. Here, the effect of trawling on the prey availability and diet of two commercially important flatfish species, plaice (Pleuronectes platessa) and dab (Limanda limanda), was investigated over a trawling intensity gradient in the Irish Sea. Previous work in this area has shown that trawling negatively affects the condition of plaice but not of dab. This study showed that reductions in local prey availability did not result in reduced feeding of fish. As trawling frequency increased, both fish and prey biomass declined, such that the ratio of fish to prey remained unchanged. Consequently, even at frequently trawled sites with low prey biomass, both plaice and dab maintained constant levels of stomach fullness and gut energy contents. However, dietary shifts in plaice towards energy-poor prey items were evident when prey species were analysed individually. This, together with a potential decrease in foraging efficiency due to low prey densities, was seen as the most plausible cause for the reduced body condition observed. Understanding the relationship between trawling, benthic impacts, fish foraging and resultant body condition is an important step in designing successful mitigation measures for future management strategies in bottom trawl fisheries. PMID:25621336

  5. Evaluation of fish sampling using rotenone in a navigation lock

    USGS Publications Warehouse

    Margraf, F.J.; Knight, C.T.

    2002-01-01

    Annual sampling in locks with rotenone has been a principal means of assessing fish populations in the commercially navigable portions of the Ohio River. Despite extensive use, sampling in locks with rotenone and interpretation of the data obtained have not been adequately evaluated. The purpose of our study was to determine the degree of inter- and intraseasonal variation in lock samples, estimate correction factors (CFs) for fish recovery rates, and compare lock samples to other fish collections from the navigational pools above and below the lock. Lock samples from all seasons had a greater proportion of pelagic and demersal fish than samples from the navigational pools, which contained greater proportions of littoral species. CF for non-recovery of fish were determined. Spring and summer lock collections yielded several more species and estimates of overall fish biomass were an order of magnitude higher than fall collections. Within season variation between lock samples was relatively low; however, variation in lock samples among seasons was high, equivalent to that seen among the annual samples from the 1980s. Thus, single-season sampling may not be adequate, and fall may be the least preferred season.

  6. Effects of bottom trawling on fish foraging and feeding

    PubMed Central

    Johnson, Andrew Frederick; Gorelli, Giulia; Jenkins, Stuart Rees; Hiddink, Jan Geert; Hinz, Hilmar

    2015-01-01

    The effects of bottom trawling on benthic invertebrates include reductions of biomass, diversity and body size. These changes may negatively affect prey availability for demersal fishes, potentially leading to reduced food intake, body condition and yield of fishes in chronically trawled areas. Here, the effect of trawling on the prey availability and diet of two commercially important flatfish species, plaice (Pleuronectes platessa) and dab (Limanda limanda), was investigated over a trawling intensity gradient in the Irish Sea. Previous work in this area has shown that trawling negatively affects the condition of plaice but not of dab. This study showed that reductions in local prey availability did not result in reduced feeding of fish. As trawling frequency increased, both fish and prey biomass declined, such that the ratio of fish to prey remained unchanged. Consequently, even at frequently trawled sites with low prey biomass, both plaice and dab maintained constant levels of stomach fullness and gut energy contents. However, dietary shifts in plaice towards energy-poor prey items were evident when prey species were analysed individually. This, together with a potential decrease in foraging efficiency due to low prey densities, was seen as the most plausible cause for the reduced body condition observed. Understanding the relationship between trawling, benthic impacts, fish foraging and resultant body condition is an important step in designing successful mitigation measures for future management strategies in bottom trawl fisheries. PMID:25621336

  7. Bioaccumulation of trace mercury in trophic levels of benthic, benthopelagic, pelagic fish species, and sea birds from Arvand River, Iran.

    PubMed

    Hosseini, Mehdi; Nabavi, Seyed Mohammad Bagher; Parsa, Yaghob

    2013-12-01

    In this study, concentration of mercury was determined in the trophic levels of benthic, benthopelagic, pelagic fish species, and river birds from Arvand River, located in the Khuzestan province in the lowlands of southwestern Iran at the head of the Persian Gulf. The order of mercury concentrations in tissues of the fish species was as follows: liver>gill>muscle and in tissues of the kingfisher species was as follows: feather>liver>kidney>muscle. Therefore, liver in fish and feather in kingfisher exhibited higher mercury concentration than the other tissues. There was a positive correlation between mercury concentrations in fish and kingfisher species with size of its food items. We expected to see higher mercury levels in tissues of female species because they are larger and can eat larger food items. The results of this study show that the highest mean mercury level were found in the kingfisher (Anas crecca), followed by benthic (Epinephelus diacanthus), benthopelagic (Chanos chanos), and pelagic fish (Strongylura strongylura). Mean value of mercury in fish species, S. strongylura were (0.61 μg g(-1) dry weight), C. chanos (0.45 μg g(-1) dry weight), E. diacanthus (0.87 μg g(-1) dry weight), and in kingfisher species A. crecca was (2.64 μg g(-1) dry weight). Significant correlation between mercury concentration in fish and kingfisher may be related to high variability of mercury in the fish. PMID:24174062

  8. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (Pacific Southwest)

    SciTech Connect

    Rackowski, J.P.; Pikitch, E.K. . Dept. of Fisheries and Wildlife; Washington Univ., Seattle, WA . Fisheries Research Inst.)

    1989-08-01

    Species profiles are literature summaries of taxonomy, morphology, range, growth characteristics, ecology, life history, and commercial importance of coastal species. Pacific sanddab, Citharichthys sordidus, and speckled sanddab, Citharichthys stigmaeus, are common along the California coast from the intertidal zone to depths of 306 m. Pacific sanddabs spawn from July to September and speckled sanddabs, from April to September. Eggs and larvae are common throughout the range of the species. Average life span is 8--10 years in Pacific sanddabs and 3--4 years in speckled sanddabs. Females of both species live longer than males. Female Pacific sanddabs attain sexual maturity at age 3 and female speckled sanddabs, at age 2. Postlarvae feed on zooplankton; adults eat a variety of crustaceans and fish. Both species prefer sandy bottoms. The speckled sanddab was the most abundant species caught in trawl surveys off southern California. Commercial catch statistics lump both species under sanddabs''. Average annual landings, 1930--70, were 500,000 pounds and from 1971--86, landings rose to 900,000 pounds. Commercial fish buyers paid $0.37 per pound for sanddabs in April, 1987. 48 refs., 9 figs.

  9. Evaluation of trace metal levels in tissues of two commercial fish species in Kapar and Mersing coastal waters, Peninsular Malaysia.

    PubMed

    Bashir, Fathi Alhashmi; Shuhaimi-Othman, Mohammad; Mazlan, A G

    2012-01-01

    This study is focused on evaluating the trace metal levels in water and tissues of two commercial fish species Arius thalassinus and Pennahia anea that were collected from Kapar and Mersing coastal waters. The concentrations of Fe, Zn, Al, As, Cd and Pb in these coastal waters and muscle, liver and gills tissues of the fishes were quantified. The relationship among the metal concentrations and the height and weight of the two species were also examined. Generally, the iron has the highest concentrations in both water and the fish species. However, Cd in both coastal waters showed high levels exceeding the international standards. The metal level concentration in the sample fishes are in the descending order livers > gills > muscles. A positive association between the trace metal concentrations and weight and length of the sample fishes was investigated. Fortunately the level of these metal concentrations in fish has not exceeded the permitted level of Malaysian and international standards. PMID:22046193

  10. Evaluation of Trace Metal Levels in Tissues of Two Commercial Fish Species in Kapar and Mersing Coastal Waters, Peninsular Malaysia

    PubMed Central

    Bashir, Fathi Alhashmi; Shuhaimi-Othman, Mohammad; Mazlan, A. G.

    2012-01-01

    This study is focused on evaluating the trace metal levels in water and tissues of two commercial fish species Arius thalassinus and Pennahia anea that were collected from Kapar and Mersing coastal waters. The concentrations of Fe, Zn, Al, As, Cd and Pb in these coastal waters and muscle, liver and gills tissues of the fishes were quantified. The relationship among the metal concentrations and the height and weight of the two species were also examined. Generally, the iron has the highest concentrations in both water and the fish species. However, Cd in both coastal waters showed high levels exceeding the international standards. The metal level concentration in the sample fishes are in the descending order livers > gills > muscles. A positive association between the trace metal concentrations and weight and length of the sample fishes was investigated. Fortunately the level of these metal concentrations in fish has not exceeded the permitted level of Malaysian and international standards. PMID:22046193

  11. The species flocks of East African cichlid fishes: recent advances in molecular phylogenetics and population genetics

    NASA Astrophysics Data System (ADS)

    Salzburger, Walter; Meyer, Axel

    With more than 3,000 species, the fish family Cichlidae is one of the most species-rich families of vertebrates. Cichlids occur in southern and central America, Africa, Madagascar, and India. The hotspot of their biodiversity is East Africa, where they form adaptive radiations composed of hundreds of endemic species in several lakes of various sizes and ages. The unparalleled species richness of East African cichlids has been something of a conundrum for evolutionary biologists and ecologists, since it has been in doubt whether these hundreds of species arose by allopatric speciation or whether it is necessary to invoke somewhat less traditional models of speciation, such as micro-allopatric, peripatric, or even sympatric speciation or evolution through sexual selection mediated by female choice. Ernst Mayr's analyses of these evolutionary uniquely diverse species assemblages have contributed to a more direct approach to this problem and have led to a deeper understanding of the patterns and processes that caused the formation of these huge groups of species. We review here recent molecular data on population differentiation and phylogenetics, which have helped to unravel, to some extent, the patterns and processes that led to the formation and ecological maintenance of cichlid species flocks. It is becoming apparent that sexually selected traits do play an important role in speciation in micro-allopatric or even sympatric settings. Species richness seems to be roughly correlated with the surface area, but not the age, of the lakes. We observe that the oldest lineages of a species flock of cichlids are often less species-rich and live in the open water or deepwater habitats. While the species flocks of the Lake Malawai and the Lake Victoria areas were shown to be monophyletic, the cichlid assemblage of Lake Tanganyika seems to consist of several independent species flocks. Cichlids emerge as an evolutionary model system in which many fundamental questions in

  12. Discovery and phylogenetic analysis of a riverine species flock of African electric fishes (Mormyridae: Teleostei).

    PubMed

    Sullivan, John P; Lavoué, Sébastien; Hopkins, Carl D

    2002-03-01

    The evolution of species-specific mate recognition signals is of particular interest within speciose monophyletic groups with restricted distributions (known as "species flocks"). However, the explosive nature of speciation in these clades makes difficult the reconstruction of their phylogenetic history. Here we describe a species flock of riverine mormyrid fishes from west-central Africa in which electric signals may play a role in the reproductive isolation of sympatric species. In our recent field collections, totaling more than 1400 specimens from many localities, we recognize 38 forms that are distinct in their morphologies and electric organ discharge (EOD) characteristics. Of these 38, only four clearly correspond to described species. Here we treat these forms as operational taxonomic units (OTUs) in a phylogenetic analysis of cytochrome b sequence data from a sample of 86 specimens. We examined support in the molecular data for the monophyly of these 38 OTUs considered together, the monophyly of each phenotypically delimited OTU considered individually, and for relationships among OTUs congruent with those inferred from the distribution of morphological and EOD character states. Trees obtained by both maximum-parsimony and maximum-likelihood analyses, rooted with sequence data from outgroup taxa, provide evidence for the monophyly of these 38 OTUs with respect to other mormyrid fishes. The small genetic distances between many distinct forms suggest their recent divergence. However, in many instances the cytochrome b tree topology fails to support the monophyly of individual OTUs and close relationships between OTUs that are similar in morphology and EOD characteristics. In other cases, individuals from distinct OTUs share identical or nearly identical haplotypes. Close examination of these cases suggests that unnatural OTU definition is not the sole cause of this pattern, and we infer an incongruence between the mitochondrial gene tree and the organismal

  13. Nursery use patterns of commercially important marine fish species in estuarine systems along the Portuguese coast

    NASA Astrophysics Data System (ADS)

    Vasconcelos, R. P.; Reis-Santos, P.; Maia, A.; Fonseca, V.; França, S.; Wouters, N.; Costa, M. J.; Cabral, H. N.

    2010-03-01

    Analysing the estuarine use patterns of juveniles of marine migrant fish species is vital for identifying important sites for juveniles as well as the basic environmental features that characterize these sites for different species. This is a key aspect towards understanding nursery function. Various estuarine systems along the Portuguese coast (Minho, Douro, Ria de Aveiro, Mondego, Tejo, Sado, Mira, Ria Formosa and Guadiana) were sampled during Spring and Summer 2005 and 2006. Juveniles of commercially important marine fish species Solea solea, Solea senegalensis, Platichthys flesus, Diplodus vulgaris and Dicentrarchus labrax, predominantly 0-group individuals, were amongst the most abundant species and had distinct patterns of estuarine use as well as conspicuous associations with several environmental features. Juvenile occurrence and density varied amongst estuaries and sites within them, and differed with species. Sites with consistently high juvenile densities were identified as important juvenile sites (i.e. putative nursery grounds). Through generalized linear models (GLM), intra-estuarine variation in occurrence and density of each of the individual species was largely explained by environmental variables (temperature; salinity; depth; percentage of mud in the sediment; presence of seagrass; importance of intertidal areas; relative distance to estuary mouth; macrozoobenthos densities; and latitude). Decisive environmental factors defining important sites for juveniles varied depending on the system as a result of different environmental gradients, though there were common dominant features for each species regardless of the estuary considered. Analysed environmental variables in the GLM also accounted for inter-estuarine variation in species' occurrence and density. In several estuaries, the identified important juvenile sites were used by many of these species simultaneously and may be of increased value to both management and conservation. Overall, the

  14. Small Fish Species as Powerful Model Systems to Study Vertebrate Physiology in Space

    NASA Astrophysics Data System (ADS)

    Muller, M.; Aceto, J.; Dalcq, J.; Alestrom, P.; Nourizadeh-Lillabadi, R.; Goerlich, R.; Schiller, V.; Winkler, C.; Renn, J.; Eberius, M.; Slenzka, K.

    2008-06-01

    Small fish models, mainly zebrafish (Danio rerio) and medaka (Oryzias latipes), have been used for many years as powerful model systems for vertebrate developmental biology. Moreover, these species are increasingly recognized as valuable systems to study vertebrate physiology, pathology, pharmacology and toxicology, including in particular bone physiology. The biology of small fishes presents many advantages, such as transparency of the embryos, external and rapid development, small size and easy reproduction. Further characteristics are particularly useful for space research or for large scale screening approaches. Finally, many technologies for easily characterizing bones are available. Our objective is to investigate the changes induced by microgravity in small fish. By combining whole genome analysis (microarray, DNA methylation, chromatin modification) with live imaging of selected genes in transgenic animals, a comprehensive and integrated characterization of physiological changes in space could be gained, especially concerning bone physiology.

  15. Change in Fish Community Structure in the Barents Sea

    PubMed Central

    Aschan, Michaela; Fossheim, Maria; Greenacre, Michael; Primicerio, Raul

    2013-01-01

    Change in oceanographic conditions causes structural alterations in marine fish communities, but this effect may go undetected as most monitoring programs until recently mainly have focused on oceanography and commercial species rather than on whole ecosystems. In this paper, the objective is to describe the spatial and temporal changes in the Barents Sea fish community in the period 1992–2004 while taking into consideration the observed abundance and biodiversity patterns for all 82 observed fish species. We found that the spatial structure of the Barents Sea fish community was determined by abiotic factors such as temperature and depth. The observed species clustered into a deep assemblage, a warm water southern assemblage, both associated with Atlantic water, and a cold water north-eastern assemblage associated with mixed water. The latitude of the cold water NE and warm water S assemblages varied from year to year, but no obvious northward migration was observed over time. In the period 1996–1999 we observed a significant reduction in total fish biomass, abundance, mean fish weight, and a change in community structure including an increase in the pelagic/demersal ratio. This change in community structure is probably due to extremely cold conditions in 1996 impacting on a fish community exposed to historically high fishing rates. After 1999 the fish community variables such as biomass, abundance, mean weight, P/D ratio as well as community composition did not return to levels of the early 90s, although fishing pressure and climatic conditions returned to earlier levels. PMID:23658646

  16. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (south Florida)

    SciTech Connect

    Jory, D.E.; Iversen, E.S. . Rosenstiel School of Marine and Atmospheric Sciences)

    1989-08-01

    Black, red, and Nassau groupers (Mycteroperca bonaci, Epinephelus morio, and E. striatus, respectively) are widely distributed on rocky bottoms and reefs along the south Florida coast. They are the most valuable marine finfish group in Florida, comprising about 25% of the total value of landings in 1984. The three species can be distinguished by morphometric, meristic, and body color characteristics. Younger fish are typically found in shallow, inshore grass beds, and larger, older fish are generally restricted to deep waters. The three species are protogynous hermaphrodites. Sexual transition can occur at any length over about 300 mm SL. An offshore movement apparently coincides with the onset of sexual maturity. Spawning aggregations have been observed throughout the year, but occur mostly between late spring and early summer. Fecundity estimates range from about 800,000 to 5,000,000 eggs per female. Both the eggs and the larvae are planktonic. Their early life history is poorly known. Larvae probably leave the plankton and become benthic at around 20--30 mm SL. Growth rates range from about 2 to 10 mm/month. The three species are unspecialized carnivores, feeding on a variety of fishes, crustaceans, and mollusks. Interspecific competition for food and shelter may be common because of the overlap in distribution, habitat, size, and food habitats. For the three species, a number of predators and parasites have been reported. Both the black and red groupers have been implicated in ciguatera poisonings in south Florida. 70 refs., 3 figs., 3 tabs.

  17. Heavy metals' concentration in sediment, shrimp and two fish species from the northwest Persian Gulf.

    PubMed

    Monikh, Fazel Abdolahpur; Maryamabadi, Ammar; Savari, Ahmad; Ghanemi, Kamal

    2015-06-01

    The concentrations of heavy metals (cadmium (Cd), copper (Cu), nickel (Ni), lead (Pb) and zinc (Zn)) were measured in hepatopancreas and muscle of a commercial shrimp (Metapenaeus affinis), in the muscle, liver and gills of two fish species (Thryssa vitrirostris and Johnius belangerii) and in the sediment samples taken from the mouth of the Arvand river, Meleh estuary and Musa estuary in the northeast Persian Gulf. Concentration of heavy metals varied depending on different tissues, species and sampling sites. Liver of fish and hepatopancreas of shrimp exhibited higher metals' concentration than the other tissues. Generally, in the mouth of the Arvand river, the highest concentration of metals was found in benthic species; while in the mouth of Musa estuary, the highest level of the metals was found in pelagic fish species. Bioaccumulation factors were observed to follow the order: J. belangerii-liver-Cd > T. vitrirostris-liver-Pb > M. affinis-hepatopancreas-Zn >M. affinis-hepatopancreas-Cu >M. affinis- hepatopancreas-Ni. The analysed heavy metals were found in sediment samples at mean concentration in the sediment quality guideline proposed by National Oceanic and Atmospheric Administration (NOAA) and Regional Organization for the Protection of The Marine Environment (ROPME), except for Ni concentration in some cases. PMID:23406960

  18. Ecological conversion efficiency and its influencers in twelve species of fish in the Yellow Sea Ecosystem

    NASA Astrophysics Data System (ADS)

    Tang, Qisheng; Guo, Xuewu; Sun, Yao; Zhang, Bo

    2007-09-01

    The ecological conversion efficiencies in twelve species of fish in the Yellow Sea Ecosystem, i.e., anchovy ( Engraulis japonicus), rednose anchovy ( Thrissa kammalensis), chub mackerel ( Scomber japonicus), halfbeak ( Hyporhamphus sajori), gizzard shad ( Konosirus punctatus), sand lance ( Ammodytes personatus), red seabream ( Pagrus major), black porgy ( Acanthopagrus schlegeli), black rockfish ( Sebastes schlegeli), finespot goby ( Chaeturichthys stigmatias), tiger puffer ( Takifugu rubripes), and fat greenling ( Hexagrammos otakii), were estimated through experiments conducted either in situ or in a laboratory. The ecological conversion efficiencies were significantly different among these species. As indicated, the food conversion efficiencies and the energy conversion efficiencies varied from 12.9% to 42.1% and from 12.7% to 43.0%, respectively. Water temperature and ration level are the main factors influencing the ecological conversion efficiencies of marine fish. The higher conversion efficiency of a given species in a natural ecosystem is acquired only under the moderate environment conditions. A negative relationship between ecological conversion efficiency and trophic level among ten species was observed. Such a relationship indicates that the ecological efficiency in the upper trophic levels would increase after fishing down marine food web in the Yellow Sea ecosystem.

  19. Impact of salinity on early life history traits of three estuarine fish species in Senegal

    NASA Astrophysics Data System (ADS)

    Labonne, Maylis; Morize, Eric; Scolan, Pierre; Lae, Raymond; Dabas, Eric; Bohn, Marcel

    2009-05-01

    The adaptive mechanisms on the early life stages of fishes to hypersaline stress are still poorly understood and probably determine the resistance of a population to disruption, compared with other less plastic species. The Casamance River in Senegal is an ideal location to test the adaptation to salinity as a dam was built in 1998 to exclude saline water intrusion. This lowered the salinity from 70 to 5 upstream and 60 downstream. The salinity influence on the growth in the early life of three West African fish species ( Ethmalosa fimbriata, Sarotherodon melanotheron, and Tilapia guineensis) was studied using the width of microstructures in the otoliths and the individual migratory behaviour analysed from strontium (Sr) to calcium (Ca) ratios in the otoliths. The Sr:Ca ratio was quantified along individual transects measured from the posterior edge of the otolith to the core. The fishes were sampled on both sides of the dam that separated water with low salinity upstream from metahaline and hyperhaline water downstream. The results showed that salinity has different influence on the growth of each species. Ethmalosa fimbriata has the highest growth during the first 180 days in the freshwaters, indicating growth inhibition in the hyperhaline areas. For the two other species no growth difference were found. The Sr/Ca ratio varied widely, in Tilapia and Sarotherodon from below the dam. Individual life histories were more heterogeneous than upstream and showed a crossing of the dam for some individuals which could reach half of the fishes analysed. On the contrary in E. fimbriata, despite the large range of salinity, identical Sr/Ca profiles were found both upstream and downstream. This indicated that Sr/Ca ratio was not appropriate to evaluate life history patterns linked to salinity for this specie.

  20. Accumulation of metals in three fish species from the Yaounde Municipal Lake in Cameroon.

    PubMed

    Léopold, Ekengele Nga; Jung, Myung Chae; Emmanuel, Ekodeck Georges

    2015-09-01

    Metals are dangerous to aquatic organisms and they can bioaccumulate in the food chain and represent risk for humans. In order to appraise their levels in fish species, concentrations of various elements including Na, Mg, K, Ca, Al, Fe, Mn, Cr, Ni, Co, Cd, Cu, Pb, Zn, Ba, and Sr were determined in the muscles and gills of three fish species (Oreochromis niloticus, Sarotherodon galilaeus, and Clarias sp.) which are more fished and consumed in the Yaounde Municipal Lake, Cameroon. According to chemical results of the fish samples analyzed by ICP-AES, the concentrations of metals (mg kg(-1), wet tissues) in those fish tissues varied as follows for the muscle (and gill) Na 1480-3780 (4180-9310), Mg 897-1250 (843-1450), K 9600-18,500 (6020-10,400), Ca 430-3900 (22,200-62,400), Al 8.10-615 (113-951), Fe 12.0-725 (307-1160), Mn 1.61-30.1 (14.3-433), Cr 1.58-267 (0.31-35.4), Ni 0.16-1.85 (1.06-2.82), Co 0.10-0.47 (0.07-0.16), Cd 0.11-0.23 (0.10-0.22), Cu 0.59-5.13 (1.31-5.13), Pb 1.11-5.12 (2.56-5.74), Zn 15.4-47.2 (45.3-69.2), Ba 0.61-51.15 (0.35-83.2), and Sr 2.31-5.74 (2.09-5.75). The results revealed that Na, Ca, Zn, Fe, and Mn were higher concentrated in the gills than in the muscles, while K, Cr, Ni, Co, and Cd were more concentrated in the muscles of the species. In addition, all the elements were bioaccumulated in the fish species and the bioaccumulation factors (BAFs) were decreased in the following order: Cr > Ni > Zn > Al > Ca > Pb > Mn > Ba > K > Fe > Mg > Cu > Na > Sr > Co > Cd. Compared to international standards, Pb, Cd, Cr, Ni, and Zn were over the recommendations of the European Community, WHO, and Norwegian guidance values for human health. Therefore, fishes from the Yaounde Municipal Lake are not advised for human consumption as toxic elements might be taken above the recommended levels. PMID:26251061

  1. Niches of dominant fish in the waters surrounding the Taishan Islands, China

    NASA Astrophysics Data System (ADS)

    Yang, Lu; Chen, Jie; Yang, Shengyun; Zhong, Huiqi; Ju, Peilong; Yang, Shunliang; Sun, Qinqin; Chen, Mingru

    2016-07-01

    An index of relative importance (IRI) was employed to screen for dominant fish in the waters surrounding the Taishan Islands, China, using data from four seasonal trawl surveys undertaken between 2012 and 2013. Niche breadth and niche overlap were measured using the Feinsinger and Morisita-Horn indices, respectively, and the characteristics and seasonal variations in the niches of dominant fish were assessed via non-metric multidimensional scaling (NMDS) and cluster analysis. A total of 80 fish species, including 16 dominant species, were recorded. Only Amblychaeturichthys hexanema was dominant in all seasons. According to niche breadth values and NMDS, the 16 dominant species were grouped into the following three types: (1) wide niche breadth species, including Cynoglossus macrolepidotus, A. hexanema, and Trypauchen vagina, among others; (2) medium niche breadth species, including Setipinna taty and Johnius belangerii; and (3) narrow niche breadth species, including Atrobucca nibe and Coilia mystus. Most species with a wider niche breadth were demersal fish with a lower swimming capability and even distribution. The niche breadth of migrating fish was narrower than that of settled fish. At a given spatial scale, fish with stronger swimming capabilities had a narrower niche breadth. Niche overlap, which is associated with niche specialization, ranged from 0.000 to 0.886 and had an annual mean value of 0.314. In summer and autumn, niche overlap was relatively high within species of the Sciaenidae family and within species of the Gobiidae in autumn. Differences in thermophily, feeding habits, food organism abundance/distribution and predator-prey relationships affected the niche overlap of fish in this area. Cluster analysis revealed that species with the narrowest niche breadth and lowest niche overlap values usually displayed lower aggregation and greater distribution differences compared with other species.

  2. Niches of dominant fish in the waters surrounding the Taishan Islands, China

    NASA Astrophysics Data System (ADS)

    Yang, Lu; Chen, Jie; Yang, Shengyun; Zhong, Huiqi; Ju, Peilong; Yang, Shunliang; Sun, Qinqin; Chen, Mingru

    2015-11-01

    An index of relative importance (IRI) was employed to screen for dominant fish in the waters surrounding the Taishan Islands, China, using data from four seasonal trawl surveys undertaken between 2012 and 2013. Niche breadth and niche overlap were measured using the Feinsinger and Morisita-Horn indices, respectively, and the characteristics and seasonal variations in the niches of dominant fish were assessed via non-metric multidimensional scaling (NMDS) and cluster analysis. A total of 80 fish species, including 16 dominant species, were recorded. Only Amblychaeturichthys hexanema was dominant in all seasons. According to niche breadth values and NMDS, the 16 dominant species were grouped into the following three types: (1) wide niche breadth species, including Cynoglossus macrolepidotus, A. hexanema, and Trypauchen vagina, among others; (2) medium niche breadth species, including Setipinna taty and Johnius belangerii; and (3) narrow niche breadth species, including Atrobucca nibe and Coilia mystus. Most species with a wider niche breadth were demersal fish with a lower swimming capability and even distribution. The niche breadth of migrating fish was narrower than that of settled fish. At a given spatial scale, fish with stronger swimming capabilities had a narrower niche breadth. Niche overlap, which is associated with niche specialization, ranged from 0.000 to 0.886 and had an annual mean value of 0.314. In summer and autumn, niche overlap was relatively high within species of the Sciaenidae family and within species of the Gobiidae in autumn. Differences in thermophily, feeding habits, food organism abundance/distribution and predator-prey relationships affected the niche overlap of fish in this area. Cluster analysis revealed that species with the narrowest niche breadth and lowest niche overlap values usually displayed lower aggregation and greater distribution differences compared with other species.

  3. Chromosomal diversity in three species of electric fish (Apteronotidae, Gymnotiformes) from the Amazon Basin

    PubMed Central

    Silva, Fernando Henrique Ramos; Pieczarka, Julio Cesar; Cardoso, Adauto Lima; da Silva, Patrícia Corrêa; de Oliveira, Jonas Alves; Nagamachi, Cleusa Yoshiko

    2014-01-01

    Cytogenetic studies were carried out on samples of Parapteronotus hasemani, Sternarchogiton preto and Sternarchorhamphus muelleri (Apteronotidae, Gymnotiformes) from the Amazon basin. The first two species exhibited both a 2n = 52 karyotype, but differed in their karyotypic formulae, distribution of constitutive heterochromatin, and chromosomal location of the NOR. The third species, Sternarchorhamphus muelleri, was found to have a 2n = 32 karyotype. In all three species the DAPI and chromomycin A3 staining results were consistent with the C-banding results and nucleolar organizer region (NOR) localization. The 18S rDNA probe confirmed that there was only one pair of ribosomal DNA cistron bearers per species. The telomeric probe did not reveal interstitial telomeric sequences (ITS). The karyotypic differences among these species can be used for taxonomic identification. These data will be useful in future studies of these fishes and help understanding the phylogenetic relationships and chromosomal evolution of the Apteronotidae. PMID:25505838

  4. Spatial variation in elemental composition of otoliths of three species of fish (family Sparidae)

    NASA Astrophysics Data System (ADS)

    Gillanders, B. M.; Kingsford, M. J.

    2003-08-01

    Determining the nursery habitat of fishes that have moved from estuarine nursery habitats is difficult. The elemental fingerprints of otoliths of three species of sparids were determined to investigate their utility as a natural tag of the nursery habitat. Juvenile Pagrus auratus (snapper), Rhabdosargus sarba (tarwhine) and Acanthopagrus australis (bream) were collected from two sites in each of 15, six and three estuaries, respectively, and their otoliths analysed by solution-based inductively coupled plasma-mass spectrometry. Significant differences in otolith chemistry were found for all three species of juveniles collected from different estuaries. The same patterns among estuaries were not seen for all species, although it was not possible to sample the same sites within an estuary for all species. For bream, significant differences in otolith chemistry were found among all three estuaries, whereas for tarwhine the six estuaries were separated into three groups. For snapper, a number of estuaries could be separated, but there was some overlap for other estuaries. All three species were collected from the same site within one estuary and their otoliths analysed. Significant differences were found among species, but the implication of this finding remains unclear as the three species show differences in microhabitat use and may also differ in age. Because the elemental fingerprints of juveniles vary among estuaries or groups of estuaries, the nursery or recruitment estuary of adult fish could now be determined by analysing the juvenile region of adult otoliths. Thus, connectivity between estuaries and open coastal populations could be determined. Such information will have major implications for fisheries management because it will provide information on the distance that fish have moved from their recruitment estuary and the number of estuaries that contribute to each adult population.

  5. Ocean acidification alters the otoliths of a pantropical fish species with implications for sensory function

    PubMed Central

    Bignami, Sean; Enochs, Ian C.; Manzello, Derek P.; Sponaugle, Su; Cowen, Robert K.

    2013-01-01

    Ocean acidification affects a wide diversity of marine organisms and is of particular concern for vulnerable larval stages critical to population replenishment and connectivity. Whereas it is well known that ocean acidification will negatively affect a range of calcareous taxa, the study of fishes is more limited in both depth of understanding and diversity of study species. We used new 3D microcomputed tomography to conduct in situ analysis of the impact of ocean acidification on otolith (ear stone) size and density of larval cobia (Rachycentron canadum), a large, economically important, pantropical fish species that shares many life history traits with a diversity of high-value, tropical pelagic fishes. We show that 2,100 μatm partial pressure of carbon dioxide (pCO2) significantly increased not only otolith size (up to 49% greater volume and 58% greater relative mass) but also otolith density (6% higher). Estimated relative mass in 800 μatm pCO2 treatments was 14% greater, and there was a similar but nonsignificant trend for otolith size. Using a modeling approach, we demonstrate that these changes could affect auditory sensitivity including a ∼50% increase in hearing range at 2,100 μatm pCO2, which may alter the perception of auditory information by larval cobia in a high-CO2 ocean. Our results indicate that ocean acidification has a graded effect on cobia otoliths, with the potential to substantially influence the dispersal, survival, and recruitment of a pelagic fish species. These results have important implications for population maintenance/replenishment, connectivity, and conservation efforts for other valuable fish stocks that are already being deleteriously impacted by overfishing. PMID:23589887

  6. Ocean acidification alters the otoliths of a pantropical fish species with implications for sensory function.

    PubMed

    Bignami, Sean; Enochs, Ian C; Manzello, Derek P; Sponaugle, Su; Cowen, Robert K

    2013-04-30

    Ocean acidification affects a wide diversity of marine organisms and is of particular concern for vulnerable larval stages critical to population replenishment and connectivity. Whereas it is well known that ocean acidification will negatively affect a range of calcareous taxa, the study of fishes is more limited in both depth of understanding and diversity of study species. We used new 3D microcomputed tomography to conduct in situ analysis of the impact of ocean acidification on otolith (ear stone) size and density of larval cobia (Rachycentron canadum), a large, economically important, pantropical fish species that shares many life history traits with a diversity of high-value, tropical pelagic fishes. We show that 2,100 μatm partial pressure of carbon dioxide (pCO2) significantly increased not only otolith size (up to 49% greater volume and 58% greater relative mass) but also otolith density (6% higher). Estimated relative mass in 800 μatm pCO2 treatments was 14% greater, and there was a similar but nonsignificant trend for otolith size. Using a modeling approach, we demonstrate that these changes could affect auditory sensitivity including a ∼50% increase in hearing range at 2,100 μatm pCO2, which may alter the perception of auditory information by larval cobia in a high-CO2 ocean. Our results indicate that ocean acidification has a graded effect on cobia otoliths, with the potential to substantially influence the dispersal, survival, and recruitment of a pelagic fish species. These results have important implications for population maintenance/replenishment, connectivity, and conservation efforts for other valuable fish stocks that are already being deleteriously impacted by overfishing. PMID:23589887

  7. Genotoxic effects of water pollution on two fish species living in Karasu River, Erzurum, Turkey.

    PubMed

    Yazıcı, Zehra; Sişman, Turgay

    2014-11-01

    Karasu River, which is the only river in the Erzurum plain, is the source of the Euphrates River (Eastern Anatolia of Turkey). The river is in a serious environmental situation as a result of pollution by agricultural and industrial sewage and domestic discharges. The present study aims to evaluate genotoxic effects of toxic metals in chub, Leuciscus cephalus, and transcaucasian barb, Capoeta capoeta, collected from contaminated site of the Karasu River, in comparison with fish from an unpolluted reference site. Heavy metal concentrations in surface water of the river were determined. The condition factor (CF) was taken as a general biomarker of the health of the fish, and genotoxicity assays such as micronucleus (MN) and other nuclear abnormalities (NA) were carried out on the fish species studied. MN and NA such as kidney-shaped nucleus, notched nucleus, binucleated, lobed nucleus, and blebbed nucleus were assessed in peripheral blood erythrocytes, gill epithelial cells, and liver cells of the fish. A significant decrease in CF values associated with a significant elevation in MN and NA frequencies was observed in fish collected from the polluted sites compared with those from the reference site. Results of the current study show the significance of integrating a set of biomarkers to identify the effects of anthropogenic pollution. High concentrations of heavy metals have a potential genotoxic effects, and the toxicity is possibly related to industrial, agricultural, and domestic activities. PMID:25117493

  8. Evaluation of a method for quantifying eugenol concentrations in the fillet tissue from freshwater fish species

    USGS Publications Warehouse

    Meinertz, Jeffery R.; Schreier, Theresa M.; Porcher, Scott T.; Smerud, Justin R.

    2016-01-01

    AQUI-S 20E® (active ingredient, eugenol; AQUI-S New Zealand Ltd, Lower Hutt, New Zealand) is being pursued for approval as an immediate-release sedative in the United States. A validated method to quantify the primary residue (the marker residue) in fillet tissue from AQUI-S 20E–exposed fish was needed. A method was evaluated for determining concentrations of the AQUI-S 20E marker residue, eugenol, in freshwater fish fillet tissue. Method accuracies from fillet tissue fortified at nominal concentrations of 0.15, 1, and 60 μg/g from six fish species ranged from 88–102%. Within-day and between-day method precisions (% CV) from the fortified tissue were ≤8.4% CV. There were no coextracted compounds from the control fillet tissue of seven fish species that interfered with eugenol analyses. Six compounds used as aquaculture drugs did not interfere with eugenol analyses. The lower limit of quantitation (LLOQ) was 0.012 μg/g. The method was robust, i.e., in most cases, minor changes to the method did not impact method performance. Eugenol was stable in acetonitrile–water (3 + 7, v/v) for at least 14 days, in fillet tissue extracts for 4 days, and in fillet tissue stored at ~ −80°C for at least 84 days.

  9. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (Mid-Atlantic)

    SciTech Connect

    Rogers, S.G.; Van Den Avyle, M.J.

    1989-08-01

    Species profiles are literature summaries of the life history, distribution and environmental requirements of coastal fishes and invertebrates. Profiles are prepared to assist with environmental impact assessment. The Atlantic menhaden (Brevoortia tyrannus) is an important commercial fish along the Atlantic coast. In the South Atlantic Region, Atlantic menhaden spawn during winter in continental shelf waters. Adults then move inshore and northward in spring; some move into estuaries as far as the brackish-freshwater boundary. Atlantic menhaden larvae in the South Atlantic Region enter estuaries after 1 to 3 months at sea. Young fish move into the shallow regions of estuaries and seem to prefer vegetated marsh habitats. Atlantic menhaden are size-selective plankton feeders as larvae, and filter feeders as juveniles and adults. Due to their large population size, individual growth rates, and seasonal movements, Atlantic menhaden annually consume and redistribute large amounts of energy and materials. They are also important prey for large game fishes such as bluefish (Pomatomus saltatrix), striped bass (Morone saxatilis), and bluefin tuna (Thunnus thynnus). The Atlantic menhaden is associated with estuarine and nearshore systems during all phases of its life cycle. Young menhaden require these food-rich habitats to survive and grown. Destruction of estuarine wetlands has decreased nursery habitat available to Atlantic menhaden and other estuarine wetlands has decreased nursery habitat available to Atlantic menhaden and other estuarine-dependent species. 115 refs., 2 figs., 2 tabs.

  10. Development of a probabilistic PCB-bioaccumulation model for six fish species in the Hudson River

    SciTech Connect

    Stackelberg, K. von; Menzie, C.

    1995-12-31

    In 1984 the US Environmental Protection Agency (USEPA) completed a Feasibility Study on the Hudson River that investigated remedial alternatives and issued a Record of Decision (ROD) later that year. In December 1989 USEPA decided to reassess the No Action decision for Hudson River sediments. This reassessment consists of three phases: Interim Characterization and Evaluation (Phase 1); Further Site Characterization and Analysis (Phase 2); and, Feasibility study (Phase 3). A Phase 1 report was completed in August, 1991. The team then completed a Final Work Plan for Phase 2 in September 1992. This work plan identified various PCB fate and transport modeling activities to support the Hudson River PCB Reassessment Remedial Investigation and Feasibility Study (RI/FS). This talk provides a description of the development of a Probabilistic bioaccumulation models to describe the uptake of PCBs on a congener-specific basis in six fish species. The authors have developed a framework for relating body burdens of PCBs in fish to exposure concentrations in Hudson River water and sediments. This framework is used to understand historical and current relationships as well as to predict fish body burdens for future conditions under specific remediation and no action scenarios. The framework incorporates a probabilistic approach to predict distributions in PCB body burdens for selected fish species. These models can predict single population statistics such as the average expected values of PCBs under specific scenarios as well as the distribution of expected concentrations.

  11. Variations in the Microcystin Content of Different Fish Species Collected from a Eutrophic Lake

    PubMed Central

    Schmidt, Justine R.; Shaskus, Mylynda; Estenik, John F.; Oesch, Carl; Khidekel, Roman; Boyer, Gregory L.

    2013-01-01

    Microcystins produced from cyanobacteria can accumulate in fish tissues. Liquid chromatography coupled with tandem quadrupole mass spectrometry (LC-MS/MS) is an attractive alternative to immunoassays for the determination of low concentrations of microcystins in tissues. Fish taken from Grand Lake St. Marys, a eutrophic lake in Ohio, USA, were analyzed for microcystin-LR in their fillets using LC-MS/MS. Of 129 fish tested for microcystins, only black crappie (Pomoxis nigromaculatus) and common carp (Cyprinus carpio) tested positive for microcystin-LR. Less than 10% of Pomoxis and 7% of Cyprinus samples contained measurable levels of microcystin-LR. Statistical analysis yielded a p-value of 0.07 between Pomoxis and the pooled results of the other four fish species. However, this comparison was complicated by the large difference in sample size between species. Further sampling in Grand Lake St. Marys for microcystin-LR would help determine if microcystin-LR exposure occurs through foodweb transfer. PMID:23676698

  12. Identification of Anisakis species (Nematoda: Anisakidae) in marine fish hosts from Papua New Guinea.

    PubMed

    Koinari, M; Karl, S; Elliot, A; Ryan, U; Lymbery, A J

    2013-03-31

    The third-stage larvae of several genera of anisakid nematodes are important etiological agents for zoonotic human anisakiasis. The present study investigated the prevalence of potentially zoonotic anisakid larvae in fish collected on the coastal shelves off Madang and Rabaul in Papua New Guinea (PNG) where fish represents a major component of the diet. Nematodes were found in seven fish species including Decapterus macarellus, Gerres oblongus, Pinjalo lewisi, Pinjalo pinjalo, Selar crumenophthalmus, Scomberomorus maculatus and Thunnus albacares. They were identified by both light and scanning electron microscopy as Anisakis Type I larvae. Sequencing and phylogenetic analysis of the ribosomal internal transcribed spacer (ITS) and the mitochondrial cytochrome C oxidase subunit II (cox2) gene identified all nematodes as Anisakis typica. This study represents the first in-depth characterisation of Anisakis larvae from seven new fish hosts in PNG. The overall prevalence of larvae was low (7.6%) and no recognised zoonotic Anisakis species were identified, suggesting a very low threat of anisakiasis in PNG. PMID:23290280

  13. Evaluation of a Method for Quantifying Eugenol Concentrations in the Fillet Tissue from Freshwater Fish Species.

    PubMed

    Meinertz, Jeffery R; Schreier, Theresa M; Porcher, Scott T; Smerud, Justin R

    2016-03-01

    AQUI-S 20E(®) (active ingredient, eugenol; AQUI-S New Zealand Ltd, Lower Hutt, New Zealand) is being pursued for approval as an immediate-release sedative in the United States. A validated method to quantify the primary residue (the marker residue) in fillet tissue from AQUI-S 20E-exposed fish was needed. A method was evaluated for determining concentrations of the AQUI-S 20E marker residue, eugenol, in freshwater fish fillet tissue. Method accuracies from fillet tissue fortified at nominal concentrations of 0.15, 1, and 60 μg/g from six fish species ranged from 88-102%. Within-day and between-day method precisions (% CV) from the fortified tissue were ≤8.4% CV. There were no coextracted compounds from the control fillet tissue of seven fish species that interfered with eugenol analyses. Six compounds used as aquaculture drugs did not interfere with eugenol analyses. The lower limit of quantitation (LLOQ) was 0.012 μg/g. The method was robust, i.e., in most cases, minor changes to the method did not impact method performance. Eugenol was stable in acetonitrile-water (3 + 7, v/v) for at least 14 days, in fillet tissue extracts for 4 days, and in fillet tissue stored at ~ -80°C for at least 84 days. PMID:27010409

  14. An eDNA Assay to Monitor a Globally Invasive Fish Species from Flowing Freshwater.

    PubMed

    Adrian-Kalchhauser, Irene; Burkhardt-Holm, Patricia

    2016-01-01

    Ponto-Caspian gobies are a flock of five invasive fish species that have colonized freshwaters and brackish waters in Europe and North America. One of them, the round goby Neogobius melanostomus, figures among the 100 worst invaders in Europe. Current methods to detect the presence of Ponto-Caspian gobies involve catching or sighting the fish. These approaches are labor intense and not very sensitive. Consequently, populations are usually detected only when they have reached high densities and when management or containment efforts are futile. To improve monitoring, we developed an assay based on the detection of DNA traces (environmental DNA, or eDNA) of Ponto-Caspian gobies in river water. The assay specifically detects invasive goby DNA and does not react to any native fish species. We apply the assay to environmental samples and demonstrate that parameters such as sampling depth, sampling location, extraction protocol, PCR protocol and PCR inhibition greatly impact detection. We further successfully outline the invasion front of Ponto-Caspian gobies in a large river, the High Rhine in Switzerland, and thus demonstrate the applicability of the assay to lotic environments. The eDNA assay requires less time, equipment, manpower, skills, and financial resources than the conventional monitoring methods such as electrofishing, angling or diving. Samples can be taken by untrained individuals, and the assay can be performed by any molecular biologist on a conventional PCR machine. Therefore, this assay enables environment managers to map invaded areas independently of fishermen's' reports and fish community monitorings. PMID:26814998

  15. Feeding ecology of indigenous and non-indigenous fish species within the family Sphyraenidae.

    PubMed

    Kalogirou, S; Mittermayer, F; Pihl, L; Wennhage, H

    2012-06-01

    The feeding ecology of two common indigenous (Sphyraena viridensis and Sphyraena sphyraena) and one abundant non-indigenous sphyraenid species, Sphyraena chrysotaenia, of Indo-Pacific Ocean origin, was investigated in an area of the eastern Mediterranean Sea. The stomach contents of 738 individuals of varying size, collected during the period December 2008 to August 2009, were examined. The dietary analyses revealed that all three species were specialized piscivores with a diet consisting of >90% fish, both by number and mass. Concurrent sampling of the fish assemblage made it possible to calculate selectivity as well as diet breadth and overlap of these strict piscivores. Even though several prey species were found in the stomachs of the three predators examined, selectivity towards Atherina boyeri was highly significant. For all species examined, >70% of the diet by mass was made up by three indigenous species of commercial value: Spicara smaris, Boops boops and A. boyeri. Diet breadth and size of prey increased with increasing body size for all predators. With increased body size, the diet overlap between indigenous and non-indigenous species decreased. This could be attributed to increased diet breadth and the specific life-history characteristics of indigenous species developing into larger individuals. During winter, the condition factor of the non-indigenous species was significantly lower than that of the indigenous, indicating that winter conditions in the Mediterranean Sea may limit its further expansion north and westward. With this study, the gap in knowledge of the feeding preferences of the most abundant piscivorous species found in coastal areas of the study region is filled. Additionally, the results indicate that non-indigenous species familial affiliation to indigenous ones does not facilitate invasion success. PMID:22650432

  16. Can Species Distribution Models Aid Bioassessment when Reference Sites are Lacking? Tests Based on Freshwater Fishes

    NASA Astrophysics Data System (ADS)

    Labay, Ben J.; Hendrickson, Dean A.; Cohen, Adam E.; Bonner, Timothy H.; King, Ryan S.; Kleinsasser, Leroy J.; Linam, Gordon W.; Winemiller, Kirk O.

    2015-10-01

    Recent literature reviews of bioassessment methods raise questions about use of least-impacted reference sites to characterize natural conditions that no longer exist within contemporary landscapes. We explore an alternate approach for bioassessment that uses species site occupancy data from museum archives as input for species distribution models (SDMs) stacked to predict species assemblages of freshwater fishes in Texas. When data for estimating reference conditions are lacking, deviation between richness of contemporary versus modeled species assemblages could provide a means to infer relative biological integrity at appropriate spatial scales. We constructed SDMs for 100 freshwater fish species to compare predicted species assemblages to data on contemporary assemblages acquired by four independent surveys that sampled 269 sites. We then compared site-specific observed/predicted ratios of the number of species at sites to scores from a multimetric index of biotic integrity (IBI). Predicted numbers of species were moderately to strongly correlated with the numbers observed by the four surveys. We found significant, though weak, relationships between observed/predicted ratios and IBI scores. SDM-based assessments identified patterns of local assemblage change that were congruent with IBI inferences; however, modeling artifacts that likely contributed to over-prediction of species presence may restrict the stand-alone use of SDM-derived patterns for bioassessment and therefore warrant examination. Our results suggest that when extensive standardized survey data that include reference sites are lacking, as is commonly the case, SDMs derived from generally much more readily available species site occupancy data could be used to provide a complementary tool for bioassessment.

  17. Organochlorine pesticides in bird species and their prey (fish) from the Ethiopian Rift Valley region, Ethiopia.

    PubMed

    Yohannes, Yared Beyene; Ikenaka, Yoshinori; Nakayama, Shouta M M; Ishizuka, Mayumi

    2014-09-01

    Organochlorine pesticides (OCPs) and stable isotopes were measured in muscle from 4 bird and 5 fish species from the Ethiopian Rift Valley region where DDT is used for malaria control and vast agricultural activities are carried out. We investigated the bioaccumulation of OCPs such as DDTs, HCHs, chlordanes, and heptachlors between the species, and examined the potential risk posed by these compounds for bird species. Significant differences in contaminant profiles and levels were observed within the species. Levels of total OCPs ranged from 3.7 to 148.7 μg/g lipid in bird and 0.04 to 10.9 μg/g lipid in fish species. DDTs were the predominant contaminant, and a positive relationship between δ(15)N and ΣDDT concentrations was found. The main DDT metabolite, p,p'-DDE was the most abundant and significantly greater concentrations in bird species (up to 138.5 μg/g lipid), which could have deleterious effects on survival and/or reproduction of birds. PMID:24907858

  18. Risk-benefit evaluation of fish from Chinese markets: nutrients and contaminants in 24 fish species from five big cities and related assessment for human health.

    PubMed

    Du, Zhen-Yu; Zhang, Jian; Wang, Chunrong; Li, Lixiang; Man, Qingqing; Lundebye, Anne-Katrine; Frøyland, Livar

    2012-02-01

    The risks and benefits of fish from markets in Chinese cities have not previously been fully evaluated. In the present study, 24 common fish species with more than 400 individual samples were collected from markets from five big Chinese cities in 2007. The main nutrients and contaminants were measured and the risk-benefit was evaluated based on recommended nutrient intakes and risk level criteria set by relevant authorities. The comprehensive effects of nutrients and contaminants in marine oily fish were also evaluated using the data of two related human dietary intervention trials performed in dyslipidemic Chinese men and women in 2008 and 2010, respectively. The results showed that concentrations of contaminants analyzed including DDT, PCB(7), arsenic and cadmium were much lower than their corresponding maximum limits with the exception of the mercury concentration in common carp. Concentrations of POPs and n-3 LCPUFA, mainly EPA and DHA, were positively associated with the lipid content of the fish. With a daily intake of 80-100g marine oily fish, the persistent organic pollutants in fish would not counteract the beneficial effects of n-3 LCPUFA in reducing cardiovascular disease (CVD) risk markers. Marine oily fish provided more effective protection against CVD than lean fish, particularly for the dyslipidemic populations. The risk-benefit assessment based on the present daily aquatic product intake in Chinese urban residents (44.9 and 62.3g for the average values for all cities and big cities, respectively) indicated that fish, particularly marine oily fish, can be regularly consumed to achieve optimal nutritional benefits from n-3 LCPUFA, without causing significant contaminant-related health risks. However, the potential health threat from contaminants in fish should still be emphasized for the populations consuming large quantities of fish, particularly wild fish. PMID:22225822

  19. Assessing species boundaries using multilocus species delimitation in a morphologically conserved group of neotropical freshwater fishes, the Poecilia sphenops species complex (Poeciliidae).

    PubMed

    Bagley, Justin C; Alda, Fernando; Breitman, M Florencia; Bermingham, Eldredge; van den Berghe, Eric P; Johnson, Jerald B

    2015-01-01

    Accurately delimiting species is fundamentally important for understanding species diversity and distributions and devising effective strategies to conserve biodiversity. However, species delimitation is problematic in many taxa, including 'non-adaptive radiations' containing morphologically cryptic lineages. Fortunately, coalescent-based species delimitation methods hold promise for objectively estimating species limits in such radiations, using multilocus genetic data. Using coalescent-based approaches, we delimit species and infer evolutionary relationships in a morphologically conserved group of Central American freshwater fishes, the Poecilia sphenops species complex. Phylogenetic analyses of multiple genetic markers (sequences of two mitochondrial DNA genes and five nuclear loci) from 10/15 species and genetic lineages recognized in the group support the P. sphenops species complex as monophyletic with respect to outgroups, with eight mitochondrial 'major-lineages' diverged by ≥2% pairwise genetic distances. From general mixed Yule-coalescent models, we discovered (conservatively) 10 species within our concatenated mitochondrial DNA dataset, 9 of which were strongly supported by subsequent multilocus Bayesian species delimitation and species tree analyses. Results suggested species-level diversity is underestimated or overestimated by at least ~15% in different lineages in the complex. Nonparametric statistics and coalescent simulations indicate genealogical discordance among our gene tree results has mainly derived from interspecific hybridization in the nuclear genome. However, mitochondrial DNA show little evidence for introgression, and our species delimitation results appear robust to effects of this process. Overall, our findings support the utility of combining multiple lines of genetic evidence and broad phylogeographical sampling to discover and validate species using coalescent-based methods. Our study also highlights the importance of testing for

  20. Assessing Species Boundaries Using Multilocus Species Delimitation in a Morphologically Conserved Group of Neotropical Freshwater Fishes, the Poecilia sphenops Species Complex (Poeciliidae)

    PubMed Central

    Bagley, Justin C.; Alda, Fernando; Breitman, M. Florencia; Bermingham, Eldredge; van den Berghe, Eric P.; Johnson, Jerald B.

    2015-01-01

    Accurately delimiting species is fundamentally important for understanding species diversity and distributions and devising effective strategies to conserve biodiversity. However, species delimitation is problematic in many taxa, including ‘non-adaptive radiations’ containing morphologically cryptic lineages. Fortunately, coalescent-based species delimitation methods hold promise for objectively estimating species limits in such radiations, using multilocus genetic data. Using coalescent-based approaches, we delimit species and infer evolutionary relationships in a morphologically conserved group of Central American freshwater fishes, the Poecilia sphenops species complex. Phylogenetic analyses of multiple genetic markers (sequences of two mitochondrial DNA genes and five nuclear loci) from 10/15 species and genetic lineages recognized in the group support the P. sphenops species complex as monophyletic with respect to outgroups, with eight mitochondrial ‘major-lineages’ diverged by ≥2% pairwise genetic distances. From general mixed Yule-coalescent models, we discovered (conservatively) 10 species within our concatenated mitochondrial DNA dataset, 9 of which were strongly supported by subsequent multilocus Bayesian species delimitation and species tree analyses. Results suggested species-level diversity is underestimated or overestimated by at least ~15% in different lineages in the complex. Nonparametric statistics and coalescent simulations indicate genealogical discordance among our gene tree results has mainly derived from interspecific hybridization in the nuclear genome. However, mitochondrial DNA show little evidence for introgression, and our species delimitation results appear robust to effects of this process. Overall, our findings support the utility of combining multiple lines of genetic evidence and broad phylogeographical sampling to discover and validate species using coalescent-based methods. Our study also highlights the importance of

  1. New and previously described species of Dactylogyridae (Monogenoidea) from the gills of Panamanian freshwater fishes (Teleostei).

    PubMed

    Mendoza-Franco, Edgar F; Aguirre-Macedo, M Leopoldina; Vidal-Martínez, Victor M

    2007-08-01

    During an investigation of the diversity of metazoan parasites of 7 freshwater fish species from 3 localities in central Panama, the following gill dactylogyrid (Monogenoidea) species were found: Aphanoblastella chagresii n. sp. from Pimelodella chagresi (Heptapteridae); Aphanoblastella travassosi (Price, 1938) Kritsky, Mendoza-Franco, and Scholz, 2000 from Rhamdia quelen (Heptapteridae); Diaphorocleidus petrosusi n. sp. from Brycon petrosus (Characidae); Gussevia asota Kritsky, Thatcher, and Boeger, 1989, from Astronotus ocellatus (Cichlidae); Sciadicleithrum panamensis n. sp. from Aequidens coeruleopunctatus (Cichlidae); Urocleidoides flegomai n. sp. from Piabucina panamensis (Lebiasinidae); and Urocleidoides similuncus n. sp. from Poecilia gillii (Poeciliidae). Consideration of the comparative morphology and distribution of these parasites along with the evolutionary history of the host fishes suggests that diversification may be associated with geotectonic events that provided isolation of the Central American fauna with the uplift of the Panamanian Isthmus during early Pliocene (3 mya). PMID:17918354

  2. Variability of PCB burden in 5 fish and sharks species of the French Mediterranean continental slope.

    PubMed

    Cresson, Pierre; Fabri, Marie Claire; Miralles, Françoise Marco; Dufour, Jean-Louis; Elleboode, Romain; Sevin, Karine; Mahé, Kelig; Bouchoucha, Marc

    2016-05-01

    Despite being generally located far from contamination sources, deep marine ecosystems are impacted by chemicals like PCB. The PCB contamination in five fish and shark species collected in the continental slope of the Gulf of Lions (NW Mediterranean Sea) was measured, with a special focus on intra- and interspecific variability and on the driving factors. Significant differences occurred between species. Higher values were measured in Scyliorhinus canicula, Galeus melastomus and Helicolenus dactylopterus and lower values in Phycis blennoides and Lepidorhombus boscii. These differences might be explained by specific abilities to accumulate and eliminate contaminant, mostly through cytochrome P450 pathway. Interindividual variation was also high and no correlation was observed between contamination and length, age or trophic level. Despite its major importance, actual bioaccumulation of PCB in deep fish is not as documented as in other marine ecosystems, calling for a better assessment of the factors driving individual bioaccumulation mechanisms and originating high variability in PCB contamination. PMID:26874319

  3. Accumulation of trace metals in the muscle and liver tissues of five fish species from the Persian Gulf.

    PubMed

    Agah, Homira; Leermakers, Martine; Elskens, Marc; Fatemi, S Mohamad Rez; Baeyens, Willy

    2009-10-01

    In this study, concentrations of 16 elements were quantified in muscles and livers of 141 fishes belonging to five commercially species. It was also our intention to evaluate potential risks to human health associated with seafood consumption. The grunt, flathead, greasy grouper, tiger-tooth croaker and silver pomfret fish species were obtained from Abadan, Deylam, Bushehr-Nirogah, Dayyer port, Lengeh port and Abbas port in Hormozgan, Bushehr and Khozesran provinces at the Iranian waters of the Persian Gulf. The contents of Al, As, Be, Cd, Cr, Co, Cu, Fe, Pb, Mn, Mo, Ni, Sb, Tl, V and Zn in fish muscles and livers were determined by Inductively Coupled Plasma Mass Spectrometry (ICP MS), after digestion in a CEM (Mars 5) microwave oven using nitric acid and hydrogen peroxide. Our results indicated that almost all metals were more accumulated in younger flathead, greasy grouper and tiger-tooth fishes. Contrary to the other fish species, grunt seems to stronger accumulating elements in the older fishes. Strong and positive correlations were observed in three or more of the fish species between V, Al, Fe, Tl, Co and Pb. The results confirmed that fish muscle and liver tissues appeared to be good bio-indicators for identification of coastal areas exposed to metallic contaminants. The results also showed that the element levels in the muscles of all fishes in our study were lower than the maximum allowable concentrations and pose no threat to public health, except for arsenic. PMID:18850288

  4. NEARSHORE FISH AND MACROINVERTEBRATE ASSEMBLAGES ALONG THE STRAIT OF JUAN DE FUCA INCLUDING FOOD HABITS OF THE COMMON NEARSHORE FISH: FINAL REPORT OF THREE YEARS' SAMPLING, 1976-1979

    EPA Science Inventory

    A seasonal survey of nearshore fishes was made in the Strait of Juan de Fuca from May 1976 to June 1979. A beach seine was used for sampling nearshore demersal fishes and a townet for nearshore pelagic fishes; intertidal fishes were sampled with the use of anesthetic and a hand n...

  5. Relation between species assemblages of fishes and water quality in salt ponds and sloughs in South San Francisco Bay

    USGS Publications Warehouse

    Mejia, F.; Saiki, M.K.; Takekawa, J.Y.

    2008-01-01

    This study was conducted to characterize fishery resources inhabiting salt-evaporation ponds and sloughs in South San Francisco Bay, and to identify key environmental variables that influence distribution of fishes. The ponds, which were originally constructed and operated for commercial production of salt, have undergone preliminary modifications (installation of culverts, gates, and other water-control structures) in preparation for full restoration to mostly tidal wetlands over the next 2 decades. We sampled fish from two salt-pond complexes (Alviso complex and Eden Landing complex), each consisting of several pond systems and their associated sloughs. Cluster analysis of species of fish indicated that at least two species assemblages were present, one characteristic of ponds and the other characteristic of sloughs and slough-like ponds. The slough-like ponds exhibited water-quality conditions (especially salinity) that resembled conditions found in the sloughs. Pond fishes were represented by 12 species, whereas slough fishes were represented by 22 species. Except for bay pipefish (Syngnathus leptorhynchus), which was unique to ponds, all species present in ponds also were in sloughs and slough-like ponds. These results indicated that species of fish in ponds originated from the sloughs. According to canonical-discriminant analysis, four environmental variables were useful for discriminating between the two species assemblages. Most discriminatory power was contributed by the index of habitat connectivity, a measure of minimum distance that a fish must travel to reach a particular pond from the nearest slough. Apparently, as fish from sloughs enter and move through interconnected salt ponds, environmental stress factors increase in severity until only the more tolerant species remain. The most likely source of stress is salinity, because this variable was second in importance to the index of habitat connectivity in discriminating between the two species

  6. Mercury and selenium levels in 19 species of saltwater fish from New Jersey as a function of species, size, and season

    PubMed Central

    Burger, Joanna; Gochfeld, Michael

    2014-01-01

    There are few data on risks to biota and humans from mercury levels in saltwater fish. This paper examines mercury and selenium levels in muscle of 19 species of fish caught by recreational fisherfolk off the New Jersey shore, as a function of species of fish, size, and season, and risk of mercury to consumers. Average mercury levels ranged from 0.01 ppm (wet weight) (Menhaden Brevoortia tyrannus) to 1.83 ppm (Mako Shark Isurus oxyrinchus). There were four categories of mercury levels: very high (only Mako), high (averaging 0.3–0.5 ppm, 3 species), medium (0.14–0.20 ppm, 10 species), and low (below 0.13 ppm, 5 species). Average selenium levels for the fish species ranged from 0.18 ppm to 0.58 ppm, and had lower variability than mercury (coefficient of variation=38.3 vs 69.1%), consistent with homeostatic regulation of this essential element. The correlation between mercury and selenium was significantly positive for five and negative for two species. Mercury levels showed significant positive correlations with fish size for ten species. Size was the best predictor of mercury levels. Selenium showed no consistent relationship to fish length. Over half of the fish species had some individual fish with mercury levels over 0.3 ppm, and a third had fish with levels over 0.5 ppm, levels that pose a human health risk for high end consumers. Conversely several fish species had no individuals above 0.5 ppm, and few above 0.3 ppm, suggesting that people who eat fish frequently, can reduce their risk from mercury by selecting which species (and which size) to consume. Overall, with the exception of shark, Bluefin Tuna (Thunnus thynnus), Bluefish (Pomatomus saltatrix) and Striped Bass (Morone saxatilis), the species sampled are generally medium to low in mercury concentration. Selenium:mercury molar ratios were generally above 1:1, except for the Mako shark. PMID:21292311

  7. Selenium and mercury molar ratios in saltwater fish from New Jersey: Individual and species variability complicate use in human health fish consumption advisories☆

    PubMed Central

    Burger, Joanna; Gochfeld, Michael

    2014-01-01

    Balancing risk versus benefits to humans and other organisms from consuming fish is a national concern in the USA, as well as in many other parts of the world. Protecting public health is both a federal and state responsibility, and states respond by issuing fish consumption advisories, particularly for mercury. Recently it has been emphasized that the protective role of selenium against mercury toxicity depends on their molar ratios, which should be evaluated as an indication of selenium’s protective capacity, and incorporated in risk assessments for fish consumption. However, there is no single “protective” ratio agreed upon. In this paper we examine the selenium:mercury (Se:Hg) molar ratios in a wide range of saltwater fish caught and eaten by recreational fishers along the New Jersey coast. We were particularly interested in interspecific and intraspecific variability, and whether the molar ratios were consistent within a species, allowing for its use in managing risk. The selenium–mercury molar ratio showed significant variation among and within fish species. The molar ratio decreased with the size of the fish species, decreased with the mercury levels, and within a fish species, the selenium:mercury ratio decreased with fish size. As an essential element, selenium undergoes some homeostatic regulation, but it is also highly toxic. Within species, mercury level tends to increase with size, accounting for the negative relationship between size and ratio. This variability may make it difficult to use the selenium:mercury molar ratio in risk assessment, risk management, and risk communication at this time, and more information is needed on how mercury and selenium actually interact and on the relationship between the molar ratios and health outcomes. PMID:22405995

  8. Philometrids (Nematoda: Philometridae) in carangid and serranid fishes off New Caledonia, including three new species

    PubMed Central

    2014-01-01

    A recent examination of newly obtained specimens of philometrid nematodes (Philometridae) parasitising carangid and serranid fishes off New Caledonia, South Pacific, revealed the presence of several nematodes of the genus Philometra Costa, 1845, including three new species: P. austropacifica n. sp. (males and females) from the ovary of Alepes vari (Carangidae), P. piscaria n. sp. (males) from the ovary of Epinephelus coioides (Serranidae), and P. selaris n. sp. (males) probably from the abdominal cavity (found in washings) of Selar crumenophthalmus (Carangidae). The new species are characterised mainly by the length and structure of the spicules and gubernaculum, body size, their location in the host and the type of host. Philometra austropacifica n. sp. is the first known nominal gonad-infecting species of Philometra parasitising a carangid fish. In addition, the gravid female of P. fasciati Moravec & Justine, 2008 from the ovary of Epinephelus fasciatus (Serranidae) is described for the first time. Carangid host fish were identified by both morphology and DNA barcoding. PMID:24836940

  9. Philometrids (Nematoda: Philometridae) in carangid and serranid fishes off New Caledonia, including three new species.

    PubMed

    Moravec, František; Justine, Jean-Lou

    2014-01-01

    A recent examination of newly obtained specimens of philometrid nematodes (Philometridae) parasitising carangid and serranid fishes off New Caledonia, South Pacific, revealed the presence of several nematodes of the genus Philometra Costa, 1845, including three new species: P. austropacifica n. sp. (males and females) from the ovary of Alepes vari (Carangidae), P. piscaria n. sp. (males) from the ovary of Epinephelus coioides (Serranidae), and P. selaris n. sp. (males) probably from the abdominal cavity (found in washings) of Selar crumenophthalmus (Carangidae). The new species are characterised mainly by the length and structure of the spicules and gubernaculum, body size, their location in the host and the type of host. Philometra austropacifica n. sp. is the first known nominal gonad-infecting species of Philometra parasitising a carangid fish. In addition, the gravid female of P. fasciati Moravec & Justine, 2008 from the ovary of Epinephelus fasciatus (Serranidae) is described for the first time. Carangid host fish were identified by both morphology and DNA barcoding. PMID:24836940

  10. Chemical analysis of endolymph and the growing otolith: fractionation of metals in freshwater fish species.

    PubMed

    Melancon, Sonia; Fryer, Brian J; Markham, James L

    2009-06-01

    The fractionation of metals from water to otolith is an area of research that has received relatively limited attention, especially in freshwater systems. The objectives of the present research were to study the metal partitioning between otolith and endolymph of two freshwater species: Lake trout (Salvelinus namaycush), and burbot (Lota lota). We also included the chemical analyses of water and blood from fish of the same species collected in the same area but during different years. These results provide insight regarding the partition of metals between water and fish. This is one of the first studies to provide a range of trace metal concentrations for endolymph and the growing otolith (both aragonite and vaterite) and to directly measure otolith-endolymph partition coefficients for freshwater fish. The trace elements (Mg, Sr, and Ba) most often used as otolith elemental tracers were the ones with the lowest uptake from water to blood. We found that endolymph and whole blood had similar metal concentrations, with Mg and Fe being the only elements enriched in whole blood. Results showed few significant differences in trace metal content between wild lake trout and burbot endolymph (except for K, Mg, and Ba), but significant differences existed between their aragonitic otoliths. These results suggest two different crystallization processes in these species or the presence of different proteins (and/or organic matrices) that would selectively influence elemental incorporation in the otoliths. PMID:19154085

  11. Comparative analysis of the oocytes and early development of two species of curimatidae teleost fish.

    PubMed

    Perini, V R; Sato, Y; Rizzo, E; Bazzoli, N

    2013-02-01

    Curimatella lepidura and Steindachnerina elegans are small forage fish, constituting an important link in the food chain, serving as food for larger commercial fish. In this study, characteristics of the eggs, of the oocyte's surface ultrastructure and of the embryogenesis are first described for these species. Absolute fecundity was 40864 ± 8769 oocytes for C. lepidura and 22089 ± 8710 oocytes for S. elegans. Oocytes of both species are yellowish, weakly adhesive and with a post-fertilization diameter of 1019.5 ± 20.6 μm and 978.75 ± 29.16 μm for C. lepidura and S. elegans, respectively. The ultrastructural analysis, using scanning electron microscopy, showed that the oocyte's surface of both species has pore canals over the entire surface and a funnel-shaped micropyle. At 24°C, the embryonic development of C. lepidura was completed 25 h after fertilization, and blastopore closure occurred in 7 h 30 min. In S. elegans, larvae hatched 20 h after fertilization, and blastopore closure occurred in 7 h 15 min. The fertilization rate was 74.5 ± 7.96 and 71.2 ± 10.8% for C. lepidura and S. elegans, respectively. This study provides important support for clarifying phylogenetic relationships and in ecological and zoological understanding of Neotropical Curimatidae fish. PMID:22583005

  12. Changes over 50 years in fish fauna of a temperate coastal sea: Degradation of trophic structure and nursery function

    NASA Astrophysics Data System (ADS)

    van der Veer, Henk W.; Dapper, Rob; Henderson, Peter A.; Jung, A. Sarina; Philippart, Catharina J. M.; Witte, Johannes IJ.; Zuur, Alain F.

    2015-03-01

    The ongoing daily sampling programme of the fish fauna in the Dutch Wadden Sea using fixed gear was analysed for the years 1960-2011. Spring sampling caught immigrating fish from the coastal zone and autumn samples reflected emigration of young-of-the-year. In total 82 fish species were caught with no clear trend in biodiversity. In both spring and autumn total daily catch fluctuated and peaked in the late 1970s. From 1980 to the present catches of both pelagic and demersal species showed a 10-fold decrease in total biomass. Mean individual biomass decreased in spring between 1980 and the present from about 150 to 20 g wet weight. No trend was found in autumn mean individual biomass which fluctuated around 20 g wet weight. The trophic structure remained constant for both the demersal and benthopelagic fish fauna from 1980 to 2011, whilst the trophic position of pelagic fish in spring fell from about 3.9 to 3.1. Min/max auto-correlation factor analysis showed similar trends in spring and autumn species biomass time series: the first axis represented a decrease from the 1960s followed by stabilization from the mid-1990s. The second trend showed an increase with a maximum around 1980 followed by a steady decrease in spring and a decrease and stabilization from 2000 in autumn. It is argued that the most likely explanatory variables are a combination of external factors: increased water temperature, habitat destruction in the coastal zone (sand dredging and beach nourishment, fishing) and increased predation by top predators for the first trend, and large-scale hydrodynamic circulation for the second trend. We conclude that both the trophic structure of the coastal zone fauna and the nursery function of the Wadden Sea have been reduced since the 1980s. Our findings corroborate that ecological change in coastal ecosystems has not only occurred in the past but still continues.

  13. A comparison of spring larval fish assemblages in the Strait of Georgia (British Columbia, Canada) between the early 1980s and late 2000s

    NASA Astrophysics Data System (ADS)

    Guan, Lu; Dower, John F.; McKinnell, Skip M.; Pepin, Pierre; Pakhomov, Evgeny A.; Hunt, Brian P. V.

    2015-11-01

    The concentration and composition of the larval fish assemblage in the Strait of Georgia (British Columbia, Canada) has changed between the early 1980s (1980 and 1981) and the late 2000s (2007, 2009 and 2010). During both periods, the spring larval fish assemblages were dominated by pelagic species: Clupea pallasi (Pacific herring), Merluccius productus (Pacific hake), Leuroglossus schmidti (northern smoothtongue) and Theragra chalcogramma (walleye Pollock). The average concentration of Merluccius productus, Theragra chalcogramma, Leuroglossus schmidti, and Sebastes spp. declined between the early 1980s and the late 2000s; in contrast, the absolute concentration and proportion of Pleuronectidae and several demersal fish taxa increased in the spring larval assemblage. Examination of the associations between larval fish assemblages and environmental fluctuations suggests that large-scale climate processes are potential contributors to variations in overall larval concentrations of the dominant taxa and assemblage composition in the Strait of Georgia.

  14. [Species and size composition of fishes in Barra de Navidad lagoon, Mexican central Pacific].

    PubMed

    González-Sansón, Gaspar; Aguilar-Betancourt, Consuelo; Kosonoy-Aceves, Daniel; Lucano-Ramírez, Gabriela; Ruiz-Ramírez, Salvador; Flores-Ortega, Juan Ramón; Hinojosa-Larios, Angel; de Asís Silva-Bátiz, Francisco

    2014-03-01

    Coastal lagoons are considered important nursery areas for many coastal fishes. Barra de Navidad coastal lagoon (3.76km2) is important for local economy as it supports tourism development and artisanal fisheries. However, the role of this lagoon in the dynamics of coastal fish populations is scarcely known. Thus, the objectives of this research were: to characterize the water of the lagoon and related weather conditions, to develop a systematic list of the ichthyofauna, and to estimate the proportion of juveniles in the total number of individuals captured of most abundant species. Water and fish samples were collected between March 2011 and February 2012. Physical and chemical variables were measured in rainy and dry seasons. Several fishing gears were used including a cast net, beach purse seine and gillnets of four different mesh sizes. Our results showed that the lagoon is most of the time euhaline (salinity 30-40ups), although it can be mixopolyhaline (salinity 18-30ups) during short periods. Chlorophyll and nutrients concentrations suggested eutrophication in the lagoon. Mean water temperature changed seasonally from 24.9 degrees C (April, high tide) to 31.4 degrees C (October, low tide). Considering ichthyofauna species, a total of 36 448 individuals of 92 species were collected, 31 of them adding up to 95% of the total of individuals caught. Dominant species were Anchoa spp. (44.6%), Diapterus peruvianus (10.5%), Eucinostomus currani (8.1%), Cetengraulis mysticetus (7.8%), Mugil curema (5.2%) and Opisthonema libertate (4.5%). The lagoon is an important juvenile habitat for 22 of the 31 most abundant species. These included several species of commercial importance such as snappers (Lutjanus argentiventris, L. colorado and L. novemfasciatus), snook (Centropomus nigrescens) and white mullet (Mugil curema). Other four species seem to use the lagoon mainly as adults. This paper is the first contribution on the composition of estuarine ichthyofauna in Jalisco

  15. Ecomorphological correlates of twenty dominant fish species of Amazonian floodplain lakes.

    PubMed

    Siqueira-Souza, F K; Bayer, C; Caldas, W H; Cardoso, D C; Yamamoto, K C; Freitas, C E C

    2016-07-11

    Fishes inhabiting Amazonian floodplain lakes exhibits a great variety of body shape, which was a key advantage to colonize the several habitats that compose these areas adjacent to the large Amazon rivers. In this paper, we did an ecomorphological analysis of twenty abundant species, sampled in May and August 2011, into two floodplain lakes of the lower stretch of the Solimões River. The analysis detected differences among species, which could be probably associated with swimming ability and habitat use preferences. PMID:27409231

  16. Distribution of Po-210 in two species of predatory marine fish from the Brazilian coast.

    PubMed

    Mársico, E T; Ferreira, M S; São Clemente, S C; Gouvea, R C S; Jesus, E F O; Conti, C C; Conte, C A; Kelecom, A G A C

    2014-02-01

    Polonium-210 ((210)Po) concentration was quantified in the muscle tissue and organs of two predatory marine fishes (Genypterus brasiliensis and Cynoscion microlepidotus) from Cabo Frio, Rio de Janeiro, Brazil. The species C. microlepidotus, a benthic carnivore, registered higher (210)Po in its tissue. The organs associated with digestion displayed the maximum radionuclide compared with other organs. The average activity was 2 mBq kg(-1) for G. brasiliensis and it was 6 mBq kg(-1) for C. microlepidotus. The activity concentrations varied significantly between the species and among organs. PMID:24334195

  17. Imprint of monsoonal patterns on the fish assemblage in coastal waters of south-east India: a case study.

    PubMed

    Biswas, S; Hussain, K Jahir; Das, N P I; Russell, B C; Satpathy, K K; Mishra, S S

    2014-09-01

    The composition, species richness and diversity of a coastal fish assemblage from the Kalpakkam coast of south-east India are described along with temporal distribution patterns related to seasonal fluctuations in dissolved oxygen, salinity, pH, chlorophyll-a, phytoplankton and zooplankton species richness and density. A total of 244 fish species belonging to 21 orders, 87 families and 163 genera were recorded. The fish assemblage was dominated by reef-associated species, followed by demersal species. The majority of the species (63%) are widely distributed in the western Indo-Pacific as well as in the central Indo-Pacific. Jaccard's coefficient analysis showed three distinct seasonal patterns of fish occurrence: pre-monsoon (PrM), monsoon (M) and post-monsoon (PoM). The maximum number of species was during the PrM period, followed by the PoM and M periods. Species occurrence analysis showed Sardinella longiceps to be dominant during PrM and M periods, Leiognathus dussumieri during the M period and Secutor insidiator and Secutor ruconius during the M and PoM periods. Canonical correspondence analysis indicated that salinity and rainfall were the two most influential environmental factors strongly correlated with temporal variation in the fish assemblage. The physico-chemical conditions, in combination with factors such as greater food availability and shelter, might control the seasonal local distribution of the ichthyofauna in these Indian coastal waters. PMID:25053000

  18. Chromosome evolution in Solanum traced by cross-species BAC-FISH.

    PubMed

    Szinay, Dóra; Wijnker, Erik; van den Berg, Ronald; Visser, Richard G F; de Jong, Hans; Bai, Yuling

    2012-08-01

    Chromosomal rearrangements are relatively rare evolutionary events and can be used as markers to study karyotype evolution. This research aims to use such rearrangements to study chromosome evolution in Solanum. Chromosomal rearrangements between Solanum crops and several related wild species were investigated using tomato and potato bacterial artificial chromosomes (BACs) in a multicolour fluorescent in situ hybridization (FISH). The BACs selected are evenly distributed over seven chromosomal arms containing inversions described in previous studies. The presence/absence of these inversions among the studied Solanum species were determined and the order of the BAC-FISH signals was used to construct phylogenetic trees.Compared with earlier studies, data from this study provide support for the current grouping of species into different sections within Solanum; however, there are a few notable exceptions, such as the tree positions of S. etuberosum (closer to the tomato group than to the potato group) and S. lycopersicoides (sister to S. pennellii). These apparent contradictions might be explained by interspecific hybridization events and/or incomplete lineage sorting. This cross-species BAC painting technique provides unique information on genome organization, evolution and phylogenetic relationships in a wide variety of species. Such information is very helpful for introgressive breeding. PMID:22686400

  19. Spatio-temporal dynamics of species richness in coastal fish communities

    USGS Publications Warehouse

    Lekve, K.; Boulinier, T.; Stenseth, N.C.; Gjøsaeter, J.; Fromentin, J-M.; Hines, J.E.; Nichols, J.D.

    2002-01-01

    Determining patterns of change in species richness and the processes underlying the dynamics of biodiversity are of key interest within the field of ecology, but few studies have investigated the dynamics of vertebrate communities at a decadal temporal scale. Here, we report findings on the spado-temporal variability in the richness and composition of fish communities along the Norwegian Skagerrak coast having been surveyed for more than half a century. Using statistical models incorporating non-detection and associated sampling variance, we estimate local species richness and changes in species composition allowing us to compute temporal variability in species richness. We tested whether temporal variation could be related to distance to the open sea and to local levels of pollution. Clear differences in mean species richness and temporal variability are observed between fjords that were and were not exposed to the effects of pollution. Altogether this indicates that the fjord is an appropriate scale for studying changes in coastal fish communities in space and time. The year-to-year rates of local extinction and turnover were found to be smaller than spatial differences in community composition. At the regional level, exposure to the open sea plays a homogenizing role, possibly due to coastal currents and advection.

  20. Comparison of species composition and richness of fish assemblages in altered and unaltered littoral habitats

    USGS Publications Warehouse

    Poe, T.P.; Hatcher, C.O.; Brown, C.L.; Schloesser, D.W.

    1986-01-01

    Species composition and richness of fish assemblages in altered and unaltered littoral habitats in Lake St. Clair, Michigan, differed between areas. A percid-cyprinid-cyprinodontid assemblage dominated in the unaltered area, Muscamoot Bay, which has a natural shoreline (with almost no alteration due to dredging or bulkheading), high water quality, and high species richness of aquatic macrophytes. A centrarchid assemblage dominated in the altered area, Belvidere Bay, which has a bulkheaded shoreline, many dredged areas, reduced water quality due to inputs of nutrients from a nearby river, and relatively low species richness of aquatic macrophytes. Habitat factors, species richness and abundance of aquatic macrophytes, had the most influence on fish community structure in both areas. The percid-cyprinid-cyprinodontid assemblage was significantly correlated with six species of macrophytes whereas the centrarchid assemblage was significantly correlated with only four. These patterns suggest that preference for diverse habitats was higher, and tolerance to habitat alteration lower, in percid-cyprinid-cyprinodontid assemblages than in centrarchid assemblages.

  1. Projected risk of population declines for native fish species in the Upper Mississippi River

    USGS Publications Warehouse

    Crimmins, S.M.; Boma, P.; Thogmartin, W.E.

    2015-01-01

    Conservationists are in need of objective metrics for prioritizing the management of habitats. For individual species, the threat of extinction is often used to prioritize what species are in need of conservation action. Using long-term monitoring data, we applied a Bayesian diffusion approximation to estimate quasi-extinction risk for 54 native fish species within six commercial navigation reaches along a 1350-km gradient of the upper Mississippi River system. We found a strong negative linear relationship between quasi-extinction risk and distance upstream. For some species, quasi-extinction estimates ranged from nearly zero in some reaches to one in others, suggesting substantial variability in threats facing individual river reaches. We found no evidence that species traits affected quasi-extinction risk across the entire system. Our results indicate that fishes within the upper Mississippi River system face localized threats that vary across river impact gradients. This suggests that conservation actions should be focused on local habitat scales but should also consider the additive effects on downstream conditions. We also emphasize the need for identification of proximate mechanisms behind observed and predicted population declines, as conservation actions will require mitigation of such mechanisms. Published 2014. This article is a U.S. Government work and is in the public domain in the USA.

  2. Integrated Taxonomy Reveals Hidden Diversity in Northern Australian Fishes: A New Species of Seamoth (Genus Pegasus)

    PubMed Central

    Osterhage, Deborah; Pogonoski, John J.; Appleyard, Sharon A.; White, William T.

    2016-01-01

    Fishes are one of the most intensively studied marine taxonomic groups yet cryptic species are still being discovered. An integrated taxonomic approach is used herein to delineate and describe a new cryptic seamoth (genus Pegasus) from what was previously a wide-ranging species. Preliminary mitochondrial DNA barcoding indicated possible speciation in Pegasus volitans specimens collected in surveys of the Torres Strait and Great Barrier Reef off Queensland in Australia. Morphological and meristic investigations found key differences in a number of characters between P. volitans and the new species, P. tetrabelos. Further mt DNA barcoding of both the COI and the slower mutating 16S genes of additional specimens provided strong support for two separate species. Pegasus tetrabelos and P. volitans are sympatric in northern Australia and were frequently caught together in trawls at the same depths. PMID:26934529

  3. Integrated Taxonomy Reveals Hidden Diversity in Northern Australian Fishes: A New Species of Seamoth (Genus Pegasus).

    PubMed

    Osterhage, Deborah; Pogonoski, John J; Appleyard, Sharon A; White, William T

    2016-01-01

    Fishes are one of the most intensively studied marine taxonomic groups yet cryptic species are still being discovered. An integrated taxonomic approach is used herein to delineate and describe a new cryptic seamoth (genus Pegasus) from what was previously a wide-ranging species. Preliminary mitochondrial DNA barcoding indicated possible speciation in Pegasus volitans specimens collected in surveys of the Torres Strait and Great Barrier Reef off Queensland in Australia. Morphological and meristic investigations found key differences in a number of characters between P. volitans and the new species, P. tetrabelos. Further mt DNA barcoding of both the COI and the slower mutating 16S genes of additional specimens provided strong support for two separate species. Pegasus tetrabelos and P. volitans are sympatric in northern Australia and were frequently caught together in trawls at the same depths. PMID:26934529

  4. Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs.

    PubMed

    Steinke, Dirk; Salzburger, Walter; Meyer, Axel

    2006-06-01

    The power of comparative phylogenomic analyses also depends on the amount of data that are included in such studies. We used expressed sequence tags (ESTs) from fish model species as a proof of principle approach in order to test the reliability of using ESTs for phylogenetic inference. As expected, the robustness increases with the amount of sequences. Although some progress has been made in the elucidation of the phylogeny of teleosts, relationships among the main lineages of the derived fish (Euteleostei) remain poorly defined and are still debated. We performed a phylogenomic analysis of a set of 42 of orthologous genes from 10 available fish model systems from seven different orders (Salmoniformes, Siluriformes, Cypriniformes, Tetraodontiformes, Cyprinodontiformes, Beloniformes, and Perciformes) of euteleostean fish to estimate divergence times and evolutionary relationships among those lineages. All 10 fish species serve as models for developmental, aquaculture, genomic, and comparative genetic studies. The phylogenetic signal and the strength of the contribution of each of the 42 orthologous genes were estimated with randomly chosen data subsets. Our study revealed a molecular phylogeny of higher-level relationships of derived teleosts, which indicates that the use of multiple genes produces robust phylogenies, a finding that is expected to apply to other phylogenetic issues among distantly related taxa. Our phylogenomic analyses confirm that the euteleostean superorders Ostariophysi and Acanthopterygii are monophyletic and the Protacanthopterygii and Ostariophysi are sister clades. In addition, and contrary to the traditional phylogenetic hypothesis, our analyses determine that killifish (Cyprinodontiformes), medaka (Beloniformes), and cichlids (Perciformes) appear to be more closely related to each other than either of them is to pufferfish (Tetraodontiformes). All 10 lineages split before or during the fragmentation of the supercontinent Pangea in the

  5. Fish species of greatest conservation need in wadeable Iowa streams: current status and effectiveness of Aquatic Gap Program distribution models

    USGS Publications Warehouse

    Sindt, Anthony R.; Pierce, Clay; Quist, Michael C.

    2012-01-01

    Effective conservation of fish species of greatest conservation need (SGCN) requires an understanding of species–habitat relationships and distributional trends. Thus, modeling the distribution of fish species across large spatial scales may be a valuable tool for conservation planning. Our goals were to evaluate the status of 10 fish SGCN in wadeable Iowa streams and to test the effectiveness of Iowa Aquatic Gap Analysis Project (IAGAP) species distribution models. We sampled fish assemblages from 86 wadeable stream segments in the Mississippi River drainage of Iowa during 2009 and 2010 to provide contemporary, independent fish species presence–absence data. The frequencies of occurrence in stream segments where species were historically documented varied from 0.0% for redfin shiner Lythrurus umbratilis to 100.0% for American brook lampreyLampetra appendix, with a mean of 53.0%, suggesting that the status of Iowa fish SGCN is highly variable. Cohen's kappa values and other model performance measures were calculated by comparing field-collected presence–absence data with IAGAP model–predicted presences and absences for 12 fish SGCN. Kappa values varied from 0.00 to 0.50, with a mean of 0.15. The models only predicted the occurrences of banded darterEtheostoma zonale, southern redbelly dace Phoxinus erythrogaster, and longnose daceRhinichthys cataractae more accurately than would be expected by chance. Overall, the accuracy of the twelve models was low, with a mean correct classification rate of 58.3%. Poor model performance probably reflects the difficulties associated with modeling the distribution of rare species and the inability of the large-scale habitat variables used in IAGAP models to explain the variation in fish species occurrences. Our results highlight the importance of quantifying the confidence in species distribution model predictions with an independent data set and the need for long-term monitoring to better understand the

  6. Threats posed by artisanal fisheries to the reproduction of coastal fish species in a Mediterranean marine protected area

    NASA Astrophysics Data System (ADS)

    Lloret, J.; Muñoz, M.; Casadevall, M.

    2012-11-01

    Artisanal fisheries are frequently considered as a sustainable activity compatible with the conservation objectives of marine protected areas (MPAs). Few studies have examined the impacts of these fisheries on the reproductive potential of exploited fish species within the marine reserves. This study evaluated the potential impact of artisanal fishing on the reproduction of coastal fish species in a Mediterranean MPA through onboard sampling from January 2008 to December 2010. Eleven sex-changing fish species constituted an important part of the catch (20% overall and up to 60% of the total gill net catch) and, in five of them, most individuals were of one sex. Artisanal fishing can negatively affect the sustainability of those coastal fishes showing sex reversal, particularly the protogynous ones such as Diplodus cervinus and Epinephelus marginatus, as well as the species with complex mating systems (e.g. some sparids, labrids and scorpaenids). In all species the average size for the individuals captured was above the minimum landing size (where this exists), but in four species (Conger conger, Diplodus puntazzo, Sphyraena spp. and Sparus aurata) it was below the size of first maturity (L50). Results show that sex and size selection by artisanal fishing not only can have an impact on the reproduction of coastal fish species but may also be exacerbating rather than reducing the impact of fishing on coastal resources. Thus, new management actions need to be urgently implemented in the MPAs where artisanal fisheries are allowed to operate in order to protect the reproductive potential of these species, particularly those showing a complicated reproductive strategy.

  7. Host range, host ecology, and distribution of more than 11800 fish parasite species

    USGS Publications Warehouse

    Strona, Giovanni; Palomares, Maria Lourdes D.; Bailly, Nicholas; Galli, Paolo; Lafferty, Kevin D.

    2013-01-01

    Our data set includes 38 008 fish parasite records (for Acanthocephala, Cestoda, Monogenea, Nematoda, Trematoda) compiled from the scientific literature, Internet databases, and museum collections paired to the corresponding host ecological, biogeographical, and phylogenetic traits (maximum length, growth rate, life span, age at maturity, trophic level, habitat preference, geographical range size, taxonomy). The data focus on host features, because specific parasite traits are not consistently available across records. For this reason, the data set is intended as a flexible resource able to extend the principles of ecological niche modeling to the host–parasite system, providing researchers with the data to model parasite niches based on their distribution in host species and the associated host features. In this sense, the database offers a framework for testing general ecological, biogeographical, and phylogenetic hypotheses based on the identification of hosts as parasite habitat. Potential applications of the data set are, for example, the investigation of species–area relationships or the taxonomic distribution of host-specificity. The provided host–parasite list is that currently used by Fish Parasite Ecology Software Tool (FishPEST, http://purl.oclc.org/fishpest), which is a website that allows researchers to model several aspects of the relationships between fish parasites and their hosts. The database is intended for researchers who wish to have more freedom to analyze the database than currently possible with FishPEST. However, for readers who have not seen FishPEST, we recommend using this as a starting point for interacting with the database.

  8. The effects of submarine canyons and the oxygen minimum zone on deep-sea fish assemblages off Hawai'i

    NASA Astrophysics Data System (ADS)

    De Leo, Fabio C.; Drazen, Jeffrey C.; Vetter, Eric W.; Rowden, Ashley A.; Smith, Craig R.

    2012-06-01

    Submarine canyons are reported to be sites of enhanced fish biomass and productivity on continental margins. However, little is known about the effects of canyons on fish biodiversity, in particular on oceanic islands, which are imbedded in regions of low productivity. Using submersibles and high-definition video surveys, we investigated demersal fish assemblages in two submarine canyons and slope areas off the island of Moloka'i, Hawai'i, at depths ranging from 314 to 1100 m. We addressed the interactions between the abundance, species richness and composition of the fish assemblage, and organic matter input and habitat heterogeneity, testing the hypotheses that heterogeneous bottom habitats and higher organic matter input in canyons enhance demersal fish abundance, and species density, richness and diversity, thereby driving differences in assemblage structure between canyons and slopes. Sediment type, substrate inclination, water-mass properties (temperature and dissolved oxygen) and organic matter input (modeled POC flux and percent detritus occurrence) were put into multivariate multiple regression models to identify potential drivers of fish assemblage structure. A total of 824 fish were recorded during ∼13 h of video yielding 55 putative species. Macrouridae was the most diverse family with 13 species, followed by Congridae (5), Ophidiidae (4) and Halosauridae (3). Assemblage structure changed markedly with depth, with the most abrupt change in species composition occurring between the shallowest stratum (314-480 m) and intermediate and deep strata (571-719 m, 946-1100 m). Chlorophthalmus sp. dominated the shallow stratum, macrourids and synaphobranchid eels at intermediate depths, and halosaurs in the deepest stratum. Assemblages only differed significantly between canyon and slope habitats for the shallow stratum, and the deep stratum at one site. Dissolved oxygen explained the greatest proportion of variance in the multivariate data, followed by POC

  9. Contrasting Genetic Structure among Populations of Two Amphidromous Fish Species (Sicydiinae) in the Central West Pacific

    PubMed Central

    Taillebois, Laura; Castelin, Magalie; Ovenden, Jennifer R.; Bonillo, Céline; Keith, Philippe

    2013-01-01

    Both present-day and past processes can shape connectivity of populations. Pleistocene vicariant events and dispersal have shaped the present distribution and connectivity patterns of aquatic species in the Indo-Pacific region. In particular, the processes that have shaped distribution of amphidromous goby species still remain unknown. Previous studies show that phylogeographic breaks are observed between populations in the Indian and Pacific Oceans where the shallow Sunda shelf constituted a geographical barrier to dispersal, or that the large spans of open ocean that isolate the Hawaiian or Polynesian Islands are also barriers for amphidromous species even though they have great dispersal capacity. Here we assess past and present genetic structure of populations of two amphidromous fish (gobies of the Sicydiinae) that are widely distributed in the Central West Pacific and which have similar pelagic larval durations. We analysed sections of mitochondrial COI, Cytb and nuclear Rhodospine genes in individuals sampled from different locations across their entire known range. Similar to other Sicydiinae fish, intraspecific mtDNA genetic diversity was high for all species (haplotype diversity between 0.9–0.96). Spatial analyses of genetic variation in Sicyopus zosterophorum demonstrated strong isolation across the Torres Strait, which was a geologically intermittent land barrier linking Australia to Papua New Guinea. There was a clear genetic break between the northwestern and the southwestern clusters in Si. zosterophorum (φST = 0.67502 for COI) and coalescent analyses revealed that the two populations split at 306 Kyr BP (95% HPD 79–625 Kyr BP), which is consistent with a Pleistocene separation caused by the Torres Strait barrier. However, this geographical barrier did not seem to affect Sm. fehlmanni. Historical and demographic hypotheses are raised to explain the different patterns of population structure and distribution between these species. Strategies

  10. Isotopic variation in five species of stream fishes under the influence of different land uses.

    PubMed

    Carvalho, D R; Castro, D; Callisto, M; Moreira, M Z; Pompeu, P S

    2015-09-01

    The aim of this study was to test if changes in land use alter the isotopic signature of fish species, promoting changes in the trophic position and food resource partitioning between these consumers. Three different systems were investigated: pasture streams (n = 3), streams in sugar cane plantations (n = 3) and reference streams (n = 3). Fish species Aspidoras fuscoguttatus, Astyanax altiparanae, Characidium zebra, Hisonotus piracanjuba and Knodus moenkhausii were selected, and their nitrogen and carbon isotopic compositions were estimated to assess changes in the trophic level and partitioning of food items consumed. The composition of δ(13) C (‰) only differed among the land use categories for A. altiparanae, H. piracanjuba and K. moenkhausii. Resource partitioning was different for all species, with changes in the sources or proportions they consumed in each land use category, but only A. altiparanae introduced new food sources in large quantity in altered land uses. It is important to note, however, that the results from the resource partitioning analysis are limited due to large overlapping of isotopic signatures between the analysed food resources. All fish species exhibited variation in δ(15) N (‰), with the highest values found in streams under sugar cane or pasture influence. Despite the variation in nitrogen isotopic values, only C. zebra and H. piracanjuba displayed changes in trophic level. Therefore, it is believed that the increase in the δ(15) N (‰) value of the individuals collected in streams under the influence of sugar cane or pasture was due to the greater influence of livestock dung and chemical and organic fertilizers. The results also highlight the importance of studying consumer species along with all forms of resources available at each location separately, because the signatures of these resources also vary within different land uses. PMID:26201419

  11. Contrasting genetic structure among populations of two amphidromous fish species (Sicydiinae) in the Central West Pacific.

    PubMed

    Taillebois, Laura; Castelin, Magalie; Ovenden, Jennifer R; Bonillo, Céline; Keith, Philippe

    2013-01-01

    Both present-day and past processes can shape connectivity of populations. Pleistocene vicariant events and dispersal have shaped the present distribution and connectivity patterns of aquatic species in the Indo-Pacific region. In particular, the processes that have shaped distribution of amphidromous goby species still remain unknown. Previous studies show that phylogeographic breaks are observed between populations in the Indian and Pacific Oceans where the shallow Sunda shelf constituted a geographical barrier to dispersal, or that the large spans of open ocean that isolate the Hawaiian or Polynesian Islands are also barriers for amphidromous species even though they have great dispersal capacity. Here we assess past and present genetic structure of populations of two amphidromous fish (gobies of the Sicydiinae) that are widely distributed in the Central West Pacific and which have similar pelagic larval durations. We analysed sections of mitochondrial COI, Cytb and nuclear Rhodospine genes in individuals sampled from different locations across their entire known range. Similar to other Sicydiinae fish, intraspecific mtDNA genetic diversity was high for all species (haplotype diversity between 0.9-0.96). Spatial analyses of genetic variation in Sicyopus zosterophorum demonstrated strong isolation across the Torres Strait, which was a geologically intermittent land barrier linking Australia to Papua New Guinea. There was a clear genetic break between the northwestern and the southwestern clusters in Si. zosterophorum (φST = 0.67502 for COI) and coalescent analyses revealed that the two populations split at 306 Kyr BP (95% HPD 79-625 Kyr BP), which is consistent with a Pleistocene separation caused by the Torres Strait barrier. However, this geographical barrier did not seem to affect Sm. fehlmanni. Historical and demographic hypotheses are raised to explain the different patterns of population structure and distribution between these species. Strategies

  12. Can Citizen Science Survey Non-indigenous Fish Species in the Eastern Mediterranean Sea?

    NASA Astrophysics Data System (ADS)

    Bodilis, P.; Louisy, P.; Draman, M.; Arceo, H. O.; Francour, P.

    2014-01-01

    Engaging non-scientists to survey ecosystems, a process known as citizen science has been adopted worldwide. For the first time, this was applied to monitor fish assemblages in the Kas Peninsula, Turkey, an area known for its important Lessepsian fish populations. For 3 years (2004, 2007 and 2010), fish assemblages were surveyed using underwater visual census by transect method. A total of 29 species was observed, seven of which were Lessepsian species. Results show a significant increase in the Lessepsian species over the study period. In 2004, they represented 34 % of the total abundance, increasing to >61 % in 2010. Differences were observed in the progression of populations between two invasive herbivores, Siganus rivulatus and Siganus luridus (Siganidae), and two native herbivores, Sparisoma cretense (Scaridae) and Sarpa salpa (Sparidae). The siganids were recorded each year in all sites, whereas S. cretense was regularly observed in fewer numbers, while S. salpa was rarely censused. Abundance of Siganus spp. increased threefold in 6 years while abundances of S. cretense and S. salpa remained stable. S. rivulatus was the most abundant among the four species. Its competitive superiority may be due to its greater adaptability to fluctuating environmental conditions and biological traits, e.g. rapid growth, earlier sexual maturity, high fecundity. Because siganids are herbivorous, their presence can strongly impact algal ecosystems. It is then important to follow their spreading at a large scale, but this can be challenging due to the limited number of scientists. Adopting citizen science can thus be a useful strategy to monitor the spread of invasive species in the Mediterranean.

  13. A Ranking System for Reference Libraries of DNA Barcodes: Application to Marine Fish Species from Portugal

    PubMed Central

    Costa, Filipe O.; Landi, Monica; Martins, Rogelia; Costa, Maria H.; Costa, Maria E.; Carneiro, Miguel; Alves, Maria J.; Steinke, Dirk; Carvalho, Gary R.

    2012-01-01

    Background The increasing availability of reference libraries of DNA barcodes (RLDB) offers the opportunity to the screen the level of consistency in DNA barcode data among libraries, in order to detect possible disagreements generated from taxonomic uncertainty or operational shortcomings. We propose a ranking system to attribute a confidence level to species identifications associated with DNA barcode records from a RLDB. Here we apply the proposed ranking system to a newly generated RLDB for marine fish of Portugal. Methodology/Principal Findings Specimens (n = 659) representing 102 marine fish species were collected along the continental shelf of Portugal, morphologically identified and archived in a museum collection. Samples were sequenced at the barcode region of the cytochrome oxidase subunit I gene (COI-5P). Resultant DNA barcodes had average intra-specific and inter-specific Kimura-2-parameter distances (0.32% and 8.84%, respectively) within the range usually observed for marine fishes. All specimens were ranked in five different levels (A–E), according to the reliability of the match between their species identification and the respective diagnostic DNA barcodes. Grades A to E were attributed upon submission of individual specimen sequences to BOLD-IDS and inspection of the clustering pattern in the NJ tree generated. Overall, our study resulted in 73.5% of unambiguous species IDs (grade A), 7.8% taxonomically congruent barcode clusters within our dataset, but awaiting external confirmation (grade B), and 18.7% of species identifications with lower levels of reliability (grades C/E). Conclusion/Significance We highlight the importance of implementing a system to rank barcode records in RLDB, in order to flag taxa in need of taxonomic revision, or reduce ambiguities of discordant data. With increasing DNA barcode records publicly available, this cross-validation system would provide a metric of relative accuracy of barcodes, while enabling the

  14. Fish species introductions provide novel insights into the patterns and drivers of phylogenetic structure in freshwaters.

    PubMed

    Strecker, Angela L; Olden, Julian D

    2014-03-01

    Despite long-standing interest of terrestrial ecologists, freshwater ecosystems are a fertile, yet unappreciated, testing ground for applying community phylogenetics to uncover mechanisms of species assembly. We quantify phylogenetic clustering and overdispersion of native and non-native fishes of a large river basin in the American Southwest to test for the mechanisms (environmental filtering versus competitive exclusion) and spatial scales influencing community structure. Contrary to expectations, non-native species were phylogenetically clustered and related to natural environmental conditions, whereas native species were not phylogenetically structured, likely reflecting human-related changes to the basin. The species that are most invasive (in terms of ecological impacts) tended to be the most phylogenetically divergent from natives across watersheds, but not within watersheds, supporting the hypothesis that Darwin's naturalization conundrum is driven by the spatial scale. Phylogenetic distinctiveness may facilitate non-native establishment at regional scales, but environmental filtering restricts local membership to closely related species with physiological tolerances for current environments. By contrast, native species may have been phylogenetically clustered in historical times, but species loss from contemporary populations by anthropogenic activities has likely shaped the phylogenetic signal. Our study implies that fundamental mechanisms of community assembly have changed, with fundamental consequences for the biogeography of both native and non-native species. PMID:24452027

  15. Fish species introductions provide novel insights into the patterns and drivers of phylogenetic structure in freshwaters

    PubMed Central

    Strecker, Angela L.; Olden, Julian D.

    2014-01-01

    Despite long-standing interest of terrestrial ecologists, freshwater ecosystems are a fertile, yet unappreciated, testing ground for applying community phylogenetics to uncover mechanisms of species assembly. We quantify phylogenetic clustering and overdispersion of native and non-native fishes of a large river basin in the American Southwest to test for the mechanisms (environmental filtering versus competitive exclusion) and spatial scales influencing community structure. Contrary to expectations, non-native species were phylogenetically clustered and related to natural environmental conditions, whereas native species were not phylogenetically structured, likely reflecting human-related changes to the basin. The species that are most invasive (in terms of ecological impacts) tended to be the most phylogenetically divergent from natives across watersheds, but not within watersheds, supporting the hypothesis that Darwin's naturalization conundrum is driven by the spatial scale. Phylogenetic distinctiveness may facilitate non-native establishment at regional scales, but environmental filtering restricts local membership to closely related species with physiological tolerances for current environments. By contrast, native species may have been phylogenetically clustered in historical times, but species loss from contemporary populations by anthropogenic activities has likely shaped the phylogenetic signal. Our study implies that fundamental mechanisms of community assembly have changed, with fundamental consequences for the biogeography of both native and non-native species. PMID:24452027

  16. 78 FR 69992 - Guidance for Industry on Purchasing Reef Fish Species Associated With the Hazard of Ciguatera...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-11-22

    ..., 2013 (78 FR 18273), FDA made available a draft guidance entitled ``Guidance for Industry: Purchasing... Fish Species Associated With the Hazard of Ciguatera Fish Poisoning; Availability AGENCY: Food and Drug... announcing the availability of a guidance for industry entitled ``Guidance for Industry: Purchasing Reef...

  17. The Importance of the Regional Species Pool, Ecological Species Traits and Local Habitat Conditions for the Colonization of Restored River Reaches by Fish

    PubMed Central

    Stoll, Stefan; Kail, Jochem; Lorenz, Armin W.; Sundermann, Andrea; Haase, Peter

    2014-01-01

    It is commonly assumed that the colonization of restored river reaches by fish depends on the regional species pools; however, quantifications of the relationship between the composition of the regional species pool and restoration outcome are lacking. We analyzed data from 18 German river restoration projects and adjacent river reaches constituting the regional species pools of the restored reaches. We found that the ability of statistical models to describe the fish assemblages established in the restored reaches was greater when these models were based on ‘biotic’ variables relating to the regional species pool and the ecological traits of species rather than on ‘abiotic’ variables relating to the hydromorphological habitat structure of the restored habitats and descriptors of the restoration projects. For species presence in restored reaches, ‘biotic’ variables explained 34% of variability, with the occurrence rate of a species in the regional species pool being the most important variable, while ’abiotic’ variables explained only the negligible amount of 2% of variability. For fish density in restored reaches, about twice the amount of variability was explained by ‘biotic’ (38%) compared to ‘abiotic’ (21%) variables, with species density in the regional species pool being most important. These results indicate that the colonization of restored river reaches by fish is largely determined by the assemblages in the surrounding species pool. Knowledge of species presence and abundance in the regional species pool can be used to estimate the likelihood of fish species becoming established in restored reaches. PMID:24404187

  18. Consistent size-independent harvest selection on fish body shape in two recreationally exploited marine species

    PubMed Central

    Alós, Josep; Palmer, Miquel; Linde-Medina, Marta; Arlinghaus, Robert

    2014-01-01

    Harvesting wild animals may exert size-independent selection pressures on a range of morphological, life history, and behavioral traits. Most work so far has focused on selection pressures on life history traits and body size as morphological trait. We studied here how recreational fishing selects for morphological traits related to body shape, which may correlate with underlying swimming behavior. Using landmark-based geometric morphometrics, we found consistent recreational fishing-induced selection pressures on body shape in two recreationally exploited marine fish species. We show that individuals with larger-sized mouths and more streamlined and elongated bodies were more vulnerable to passively operated hook-and-line fishing independent of the individual's body size or condition. While the greater vulnerability of individuals with larger mouth gapes can be explained by the direct physical interaction with hooks, selection against streamlined and elongated individuals could either involve a specific foraging mode or relate to underlying elevated swimming behavior. Harvesting using passive gear is common around the globe, and thus, size-independent selection on body shape is expected to be widespread potentially leaving behind individuals with smaller oral gapes and more compact bodies. This might have repercussions for food webs by altering foraging and predation. PMID:25360257

  19. Fish oil increases mitochondrial phospholipid unsaturation, upregulating reactive oxygen species and apoptosis in rat colonocytes.

    PubMed

    Hong, Mee Young; Chapkin, Robert S; Barhoumi, Rola; Burghardt, Robert C; Turner, Nancy D; Henderson, Cara E; Sanders, Lisa M; Fan, Yang-Yi; Davidson, Laurie A; Murphy, Mary E; Spinka, Christine M; Carroll, Raymond J; Lupton, Joanne R

    2002-11-01

    We have shown that a combination of fish oil (high in n-3 fatty acids) with the butyrate-producing fiber pectin, upregulates apoptosis in colon cells exposed to the carcinogen azoxymethane, protecting against colon tumor development. We now hypothesize that n-3 fatty acids prime the colonocytes such that butyrate can initiate apoptosis. To test this, 30 Sprague-Dawley rats were provided with diets differing in the fatty acid composition (corn oil, fish oil or a purified fatty acid ethyl ester diet). Intact colon crypts were exposed ex vivo to butyrate, and analyzed for reactive oxygen species (ROS), mitochondrial membrane potential (MMP), translocation of cytochrome C to the cytosol, and caspase-3 activity (early events in apoptosis). The fatty acid composition of the three major mitochondrial phospholipids was also determined, and an unsaturation index calculated. The unsaturation index in cardiolipin was correlated with ROS levels (R = 0.99; P = 0.02). When colon crypts from fish oil and FAEE-fed rats were exposed to butyrate, MMP decreased (P = 0.041); and translocation of cytochrome C to the cytosol (P = 0.037) and caspase-3 activation increased (P = 0.032). The data suggest that fish oil may prime the colonocytes for butyrate-induced apoptosis by enhancing the unsaturation of mitochondrial phospholipids, especially cardiolipin, resulting in an increase in ROS and initiating apoptotic cascade. PMID:12419841

  20. Use of RAMAS to estimate ecological risk: Two fish species case studies

    SciTech Connect

    Ferson, S.; Akcakaya, R.; Ginzburg, L.; Krause, M. )

    1991-02-01

    RAMAS, (Risk Analysis Management Alternative System), a microcomputer simulation package for stochastic age-structured population models, was used to assess the population-level ecological risks associated with anthropogenic mortality in two species of fish. RAMAS facilitated comparison of the effects of fishing and entrainment/impingement mortality on Hudson River striped bass populations. The highest likely mortality levels associated with power generation did not yield increases in risk of overall population decline as large as did the pressure from sport fishing alone (33 in. limit, 5/day). Qualitative differences associated with the life stages affected by these industries account for most of the variation observed. Simulations performed under a range of assumptions about density-dependent parameters for the striped bass population gave similar conclusions. However, strengthening density dependence decreased the probability of quasi-extinction slightly. Density-dependent stochastic demographic modeling of a bluegill population in selenium (Se) affected power plant cooling lake in North Carolina revealed intrinsic cycling of population abundance. This cycling increases the risk that population abundances will fall to low levels in natural as well as anthropogenically impacted populations. The dynamics of bluegills affected by Se contrasts sharply with that of the undisturbed fish. Continuation of the Se discharge will most likely result in the suppression of the affected bluegill population. The bluegill population, however, could recover to natural levels of abundance within two or three generations if Se discharge were significantly curtailed. 9 refs., 29 figs., 7 tabs.

  1. Consistent size-independent harvest selection on fish body shape in two recreationally exploited marine species.

    PubMed

    Alós, Josep; Palmer, Miquel; Linde-Medina, Marta; Arlinghaus, Robert

    2014-06-01

    Harvesting wild animals may exert size-independent selection pressures on a range of morphological, life history, and behavioral traits. Most work so far has focused on selection pressures on life history traits and body size as morphological trait. We studied here how recreational fishing selects for morphological traits related to body shape, which may correlate with underlying swimming behavior. Using landmark-based geometric morphometrics, we found consistent recreational fishing-induced selection pressures on body shape in two recreationally exploited marine fish species. We show that individuals with larger-sized mouths and more streamlined and elongated bodies were more vulnerable to passively operated hook-and-line fishing independent of the individual's body size or condition. While the greater vulnerability of individuals with larger mouth gapes can be explained by the direct physical interaction with hooks, selection against streamlined and elongated individuals could either involve a specific foraging mode or relate to underlying elevated swimming behavior. Harvesting using passive gear is common around the globe, and thus, size-independent selection on body shape is expected to be widespread potentially leaving behind individuals with smaller oral gapes and more compact bodies. This might have repercussions for food webs by altering foraging and predation. PMID:25360257

  2. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (South Atlantic): Brown shrimp

    SciTech Connect

    Larson, S.C.; Van Den Avyle, M.J.; Bozeman, E.L. Jr.

    1989-01-01

    Species profiles are literature summaries of the life history, distribution, and environmental requirements of coastal fishes and invertebrates. Profiles are prepared to assist with environmental impact assessment. Brown shrimp (Penaeus aztecus) account for about one-third of the commercial shrimp harvest in the South Atlantic Region; the landing were worth $20 million in 1982. In the South Atlantic Region, commercially importance brown shrimp fishing grounds extend from Fort Pierce, Florida, to Pamlico Sound and Ocracoke Inlet, North Carolina. Most of the commercial harvest is taken inside the 10-fathom contour. Brown shrimp are omnivorous and eat food items ranging from detritus to small invertebrates and fishes. Many predators, including fishes and crustaceans, feed on brown shrimp. Brown shrimp survival is reduced by adverse temperature or salinities. Intertidal vegetation is an important characteristic of brown shrimp nursery areas. The suitability of some estuaries as nursery areas may be reduced by bulkheading, ditching, disposal of dredged materials, and drainage from agricultural and silvicultural areas. Existing estuarine areas must be preserved to ensure the continued production of brown shrimp. 57 refs., 2 figs., 2 tabs.

  3. Fish oil increases mitochondrial phospholipid unsaturation, upregulating reactive oxygen species and apoptosis in rat colonocytes

    NASA Technical Reports Server (NTRS)

    Hong, Mee Young; Chapkin, Robert S.; Barhoumi, Rola; Burghardt, Robert C.; Turner, Nancy D.; Henderson, Cara E.; Sanders, Lisa M.; Fan, Yang-Yi; Davidson, Laurie A.; Murphy, Mary E.; Spinka, Christine M.; Carroll, Raymond J.; Lupton, Joanne R.

    2002-01-01

    We have shown that a combination of fish oil (high in n-3 fatty acids) with the butyrate-producing fiber pectin, upregulates apoptosis in colon cells exposed to the carcinogen azoxymethane, protecting against colon tumor development. We now hypothesize that n-3 fatty acids prime the colonocytes such that butyrate can initiate apoptosis. To test this, 30 Sprague-Dawley rats were provided with diets differing in the fatty acid composition (corn oil, fish oil or a purified fatty acid ethyl ester diet). Intact colon crypts were exposed ex vivo to butyrate, and analyzed for reactive oxygen species (ROS), mitochondrial membrane potential (MMP), translocation of cytochrome C to the cytosol, and caspase-3 activity (early events in apoptosis). The fatty acid composition of the three major mitochondrial phospholipids was also determined, and an unsaturation index calculated. The unsaturation index in cardiolipin was correlated with ROS levels (R = 0.99; P = 0.02). When colon crypts from fish oil and FAEE-fed rats were exposed to butyrate, MMP decreased (P = 0.041); and translocation of cytochrome C to the cytosol (P = 0.037) and caspase-3 activation increased (P = 0.032). The data suggest that fish oil may prime the colonocytes for butyrate-induced apoptosis by enhancing the unsaturation of mitochondrial phospholipids, especially cardiolipin, resulting in an increase in ROS and initiating apoptotic cascade.

  4. Infection experiments with Aphanomyces invadans in four species of estuarine fish

    USGS Publications Warehouse

    Johnson, R.A.; Zabrecky, J.; Kiryu, Y.; Shields, J.D.

    2004-01-01

    Along the eastern seaboard of the US, Atlantic menhaden, Brevoortia tyrannus, develop characteristic ulcerative lesions, a condition termed ulcerative mycosis. These lesions are identical to those seen across Asia in fish affected by epizootic ulcerative syndrome, a condition caused by the fungus-like oomycete Aphanomyces Invadans. Young-of-the-year menhaden inhabiting estuarine environments are the primary species affected in the USA and little is known about the factors involved in the initiation of the lesions, or why menhaden are predominantly infected. Atlantic menhaden, hogchoker, Trinectus maculatus, striped killifish, Fundulus majalis, and mummichog, Fundulus heteroclitus, were inoculated with A. invadans (80 zoospores per fish) to explore species differences in infection and lesion development. All four species developed lesions. Killifish developed frank lesions similar to those observed in menhaden but the gross lesions occurred later, approximately 5-10 days after those on menhaden. Hogchoker and mummichog did not develop gross skin ulcers; rather, their lesions appeared as reddened areas under the epidermis. Mummichogs also showed evidence of significant healing with a well-developed granuloma and significant myocyte regeneration. These experiments show that species barriers as well as ecological barriers can explain some of the factors involved in the development of lesions in, and specificity of the water mould for, menhaden.

  5. Acute Toxicity and Bioaccumulation of Chloroform to Four Species of Freshwater Fish

    SciTech Connect

    ,

    1980-08-01

    Acute toxicity of chloroform to four species of freshwater fish was studied in flow-through 96-hr toxicity tests. Chloroform is toxic to fish in the tens of parts per million, a concentration well above that which would be expected to be produced under normal power plant chlorination conditions. Investigations of acute toxicity of chloroform and the bioaccumulation of chlorinated compounds in tissues of fish revealed differences in tolerance levels and tissue accumulations. Mean 96-hr LC{sub 50}s for chloroform were 18 ppm for rainbow trout and bluegill, 51 ppm for largemouth bass and 75 ppm for channel catfish. Mortalities of bluegill and largemouth bass occurred during the first 4 hr of exposure while rainbow trout and channel catfish showed initial tolerance and mortalities occurred during the latter half of the 96-hr exposure. Rainbow trout had the highest level of chloroform tissue accumulation, 7 {micro}g/g tissue, catfish the second highest, 4 {micro}g/g tissue, followed by bluegill and largemouth bass which each accumulated about 3 {micro}g/g tissue. Accumulation of chloroform was less than one order of magnitude above water concentrations for all species.

  6. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): Lingcod

    SciTech Connect

    Shaw, W.N. . Fred Telonicher Marine Lab.); Hassler, T.J. . California Cooperative Fishery Research Unit)

    1989-12-01

    Species Profiles are literature summaries of the taxonomy, morphology, distribution, life history, and environmental requirements of coastal aquatic species. They are prepared to assist in environmental impact assessments. Lingcod, especially during the spawning season, could suffer from oil spills. The lingcod, Ophiodon elongatus, spawns during winter in rocky areas where currents are strong. Lingcod spawn over rocky substrates and the eggs are benthic. Fecundity increases with body weight, e.g., one lingcod weighing 4.5 kg had about 60,000 eggs and one weighing 14.5 kg had about 518,000 eggs. Larvae are extremely active: at first, they feed on small copepods and copepod eggs; later they shift to larger invertebrates and fish larvae. Juvenile lingcod feed on crustaceans and small fish whereas adult lingcod apparently are generalist carnivores (feeding principally on fish). Females become larger and live longer than males. Lingcod contribute to large sport and commercial fisheries. Commercial fisherman use trolling gear, handling jigs, set nets, and set lines, and otter trawls. Sport fishermen use spears or hook and line. Mariculture of lingcod is unlikely in the near future, since no one has succeeded on rearing them from egg to market size. 40 refs., 5 figs., 1 tab.

  7. Diastereoisomer- and species-specific distribution of hexabromocyclododecane (HBCD) in fish and marine invertebrates.

    PubMed

    Son, Min-Hui; Kim, Jongchul; Shin, Eun-Su; Seo, Sung-hee; Chang, Yoon-Seok

    2015-12-30

    The levels and distributional characteristics of hexabromocyclododecane (HBCD) diastereoisomers have been largely reported for various fish and select shellfish. In this study, we reclassified a number and variety of marine invertebrates, including shellfish, to further contribute to the comprehensive understanding of the effects and assessment of human exposure to HBCD. Overall, 30 marine invertebrate species (n=188) were investigated and the following order of ∑2HBCD (α- and γ-HBCD) was observed: fish>chordata>cephalopoda>echinodermata>bivalve>crustacea. The marine invertebrates that were reclassified into nektonic and benthic organisms showed similar concentration of ∑2HBCD. The feeding habits and modes of the marine organisms were considered to compare the degree of bioaccumulation and diastereoisomer-specific distribution of HBCD due to the effects of the environment in and around pollution sources, as well as the organisms' metabolic capacities. To the best of our knowledge, this is the first study to examine the species-specific distribution patterns of HBCD for both fish and marine invertebrates. We expect to significantly expand the understanding of the environmental fate of HBCD for marine organisms. PMID:26163486

  8. Lipid content and fatty acid composition of 11 species of Queensland (Australia) fish.

    PubMed

    Belling, G B; Abbey, M; Campbell, J H; Campbell, G R

    1997-06-01

    The fatty acid composition of 11 species of fish caught of the northeast coast of Australia was determined. No fatty acid profiles have been previously published for fish from this area nor for nine of these species. Although the percentage of polyunsaturated fatty acid (PUFA) was the same as the calculated average for Australian fish (42.3%), the percentage of n-3 fatty acids was lower (24.4 +/- 5.4% vs. 30.7 +/- 10.1%) and the n-6 fatty acids higher (16.5 +/- 4.5% vs. 11.2 +/- 5.9%), P < 0.001 in each case. The major n-3 PUFA were docosahexaenoic (15.6 +/- 6.3%) and eicosapentaenoic acid (4.3 +/- 1.1%) while the major n-6 PUFA were arachidonic (8.3 +/- 3.2%) and n-6 docosatetraenoic acid (3.1 +/- 1.3%). The second-most abundant class of fatty acid was the saturates (31.6 +/- 3.5%) while the monounsaturates accounted for 17.4 +/- 4.3% of the total fatty acids. The monounsaturate with the highest concentration was octadecenoic acid (11.8 +/- 2.6%). There was a positive correlation between the total lipid content and saturated and monounsaturated fatty acids (r = 0.675 and 0.567, respectively) and a negative correlation between the total lipid content and PUFA (r = 0.774). PMID:9208391

  9. A TEMPERATE REEF FISH TAUTOGLABRUS ADSPERSUS, (WALBAUM) AS A POTENTIAL MODEL SPECIES FOR LABORATORY STUDIES EVALUATING EFFECTS OF CHEMICAL EXPOSURE

    EPA Science Inventory

    In ecostoxicological testing, there are few studies that report on reproductive output (egg production) of marine or estuarine fish. Cunner (Tautogolabrus adspersus) were studied as a potential model species to evaluate the impact of pollutants with estrogenic activity on reprodu...

  10. FAST Real Time PCR for control of intra-species recycling in aquaculture feed, focused to the most relevant fish species farmed in Europe.

    PubMed

    Espiñeira, Montserrat; Vieites, Juan M

    2016-08-01

    Recent regulations in animal feed composition prohibit intra-species recycling, the recycling of one given animal species to the same species, in order to avoid potential safety risks to human and animal health. These regulations have generated the need of their control in aquaculture by effective and specific analytical techniques. To date, most studies of species identification and detection in feedstuffs are focused on land species, but few studies are focused on species composition in fish feed. The present work describes five methodologies based in Real Time PCR for detection of the most relevant fish species farmed in Europe: gilthead sea bream (Sparus aurata); sea bass (Dicentrarchus labrax); turbot (Scophthalmus maximus); rainbow trout (Onchorynchus mykiss); and salmon (Salmo salar), in order to guarantee the intra-species recycling regulation in aquaculture feedstuffs. PMID:26988512

  11. The influence of finfish aquaculture on benthic fish and crustacean assemblages in Fitzgerald Bay, South Australia.

    PubMed

    Tanner, Jason E; Williams, Kane

    2015-01-01

    The influence of sea-cage aquaculture on wildfish assemblages has received little attention outside of Europe. Sea-cage aquaculture of finfish is a major focus in South Australia, and while the main species farmed is southern bluefin tuna (Thunnus maccoyii), there is also an important yellowtail kingfish (Seriola lalandi) industry. Yellowtail kingfish aquaculture did not appear to have any local or regional effects on demersal assemblages (primarily fish, but also some crustaceans) surveyed by baited remote underwater video (BRUV) in Fitzgerald Bay. We did, however, detect small scale spatial variations in assemblages within the bay. The type of bait used strongly influenced the assemblage recorded, with significantly greater numbers of fish attracted to deployments where sardines were used as the bait to compared to those with no bait. The pelleted feed used by the aquaculture industry was just as attractive as sardines at one site, and intermediate between sardines and no bait at the other. There was significant temporal variability in assemblages at both farm sites and one control site, while the second control site was temporally stable (over the 9 weeks of the study). Overall, the results suggested that aquaculture was having little if any impact on the abundance and assemblage structure of the demersal macrofauna in Fitzgerald Bay. PMID:26401452

  12. The influence of finfish aquaculture on benthic fish and crustacean assemblages in Fitzgerald Bay, South Australia

    PubMed Central

    Williams, Kane

    2015-01-01

    The influence of sea-cage aquaculture on wildfish assemblages has received little attention outside of Europe. Sea-cage aquaculture of finfish is a major focus in South Australia, and while the main species farmed is southern bluefin tuna (Thunnus maccoyii), there is also an important yellowtail kingfish (Seriola lalandi) industry. Yellowtail kingfish aquaculture did not appear to have any local or regional effects on demersal assemblages (primarily fish, but also some crustaceans) surveyed by baited remote underwater video (BRUV) in Fitzgerald Bay. We did, however, detect small scale spatial variations in assemblages within the bay. The type of bait used strongly influenced the assemblage recorded, with significantly greater numbers of fish attracted to deployments where sardines were used as the bait to compared to those with no bait. The pelleted feed used by the aquaculture industry was just as attractive as sardines at one site, and intermediate between sardines and no bait at the other. There was significant temporal variability in assemblages at both farm sites and one control site, while the second control site was temporally stable (over the 9 weeks of the study). Overall, the results suggested that aquaculture was having little if any impact on the abundance and assemblage structure of the demersal macrofauna in Fitzgerald Bay. PMID:26401452

  13. DNA barcoding and microsatellites help species delimitation and hybrid identification in endangered galaxiid fishes.

    PubMed

    Vanhaecke, Delphine; Garcia de Leaniz, Carlos; Gajardo, Gonzalo; Young, Kyle; Sanzana, Jose; Orellana, Gabriel; Fowler, Daniel; Howes, Paul; Monzon-Arguello, Catalina; Consuegra, Sofia

    2012-01-01

    The conservation of data deficient species is often hampered by inaccurate species delimitation. The galaxiid fishes Aplochiton zebra and Aplochiton taeniatus are endemic to Patagonia (and for A. zebra the Falkland Islands), where they are threatened by invasive salmonids. Conservation of Aplochiton is complicated because species identification is hampered by the presence of resident as well as migratory ecotypes that may confound morphological discrimination. We used DNA barcoding (COI, cytochrome b) and a new developed set of microsatellite markers to investigate the relationships between A. zebra and A. taeniatus and to assess their distributions and relative abundances in Chilean Patagonia and the Falkland Islands. Results from both DNA markers were 100% congruent and revealed that phenotypic misidentification was widespread, size-dependent, and highly asymmetric. While all the genetically classified A. zebra were correctly identified as such, 74% of A. taeniatus were incorrectly identified as A. zebra, the former species being more widespread than previously thought. Our results reveal, for the first time, the presence in sympatry of both species, not only in Chilean Patagonia, but also in the Falkland Islands, where A. taeniatus had not been previously described. We also found evidence of asymmetric hybridisation between female A. taeniatus and male A. zebra in areas where invasive salmonids have become widespread. Given the potential consequences that species misidentification and hybridisation can have for the conservation of these endangered species, we advocate the use of molecular markers in order to reduce epistemic uncertainty. PMID:22412956

  14. DNA Barcoding and Microsatellites Help Species Delimitation and Hybrid Identification in Endangered Galaxiid Fishes

    PubMed Central

    Vanhaecke, Delphine; Garcia de Leaniz, Carlos; Gajardo, Gonzalo; Young, Kyle; Sanzana, Jose; Orellana, Gabriel; Fowler, Daniel; Howes, Paul; Monzon-Arguello, Catalina; Consuegra, Sofia

    2012-01-01

    The conservation of data deficient species is often hampered by inaccurate species delimitation. The galaxiid fishes Aplochiton zebra and Aplochiton taeniatus are endemic to Patagonia (and for A. zebra the Falkland Islands), where they are threatened by invasive salmonids. Conservation of Aplochiton is complicated because species identification is hampered by the presence of resident as well as migratory ecotypes that may confound morphological discrimination. We used DNA barcoding (COI, cytochrome b) and a new developed set of microsatellite markers to investigate the relationships between A. zebra and A. taeniatus and to assess their distributions and relative abundances in Chilean Patagonia and the Falkland Islands. Results from both DNA markers were 100% congruent and revealed that phenotypic misidentification was widespread, size-dependent, and highly asymmetric. While all the genetically classified A. zebra were correctly identified as such, 74% of A. taeniatus were incorrectly identified as A. zebra, the former species being more widespread than previously thought. Our results reveal, for the first time, the presence in sympatry of both species, not only in Chilean Patagonia, but also in the Falkland Islands, where A. taeniatus had not been previously described. We also found evidence of asymmetric hybridisation between female A. taeniatus and male A. zebra in areas where invasive salmonids have become widespread. Given the potential consequences that species misidentification and hybridisation can have for the conservation of these endangered species, we advocate the use of molecular markers in order to reduce epistemic uncertainty. PMID:22412956

  15. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (Pacific Southwest): Amphipods

    SciTech Connect

    Grosse, D.J.; Pauley, G.B.

    1989-01-01

    Species profiles are literature summaries of the taxonomy, morphology, distribution, life history, and environmental requirements of coastal aquatic species. They are prepared to assist in environmental impact assessment. Amphipods are ubiquitous in distribution, but are most abundant in estuarine areas and other high nutrient areas. Hyperiidea are the third most abundant coastal marine crustacean zooplankton, following copepods and euphausiids. Benthic Gammaridea are an invaluable food source for many economically important fish and invertebrate species. Habitat preference and behavior of the major amphipod groups is highly variable. Intertidal California amphipods overlap the distribution of common genera of other regions around the world. Amphipoda are reported to be indicators of heavily polluted areas. They are considered the most efficient of all scavengers on the sea bottom and in shoreline areas. 66 refs., 5 figs.

  16. Modeling the Relations Between Flow Regime Components, Species Traits, and Spawning Success of Fishes in Warmwater Streams

    NASA Astrophysics Data System (ADS)

    Craven, Scott W.; Peterson, James T.; Freeman, Mary C.; Kwak, Thomas J.; Irwin, Elise

    2010-08-01

    Modifications to stream hydrologic regimes can have a profound influence on the dynamics of their fish populations. Using hierarchical linear models, we examined the relations between flow regime and young-of-year fish density using fish sampling and discharge data from three different warmwater streams in Illinois, Alabama, and Georgia. We used an information theoretic approach to evaluate the relative support for models describing hypothesized influences of five flow regime components representing: short-term high and low flows; short-term flow stability; and long-term mean flows and flow stability on fish reproductive success during fish spawning and rearing periods. We also evaluated the influence of ten fish species traits on fish reproductive success. Species traits included spawning duration, reproductive strategy, egg incubation rate, swimming locomotion morphology, general habitat preference, and food habits. Model selection results indicated that young-of-year fish density was positively related to short-term high flows during the spawning period and negatively related to flow variability during the rearing period. However, the effect of the flow regime components varied substantially among species, but was related to species traits. The effect of short-term high flows on the reproductive success was lower for species that broadcast their eggs during spawning. Species with cruiser swimming locomotion morphologies (e.g., Micropterus) also were more vulnerable to variable flows during the rearing period. Our models provide insight into the conditions and timing of flows that influence the reproductive success of warmwater stream fishes and may guide decisions related to stream regulation and management.

  17. An eDNA Assay to Monitor a Globally Invasive Fish Species from Flowing Freshwater

    PubMed Central

    Adrian-Kalchhauser, Irene; Burkhardt-Holm, Patricia

    2016-01-01

    Ponto-Caspian gobies are a flock of five invasive fish species that have colonized freshwaters and brackish waters in Europe and North America. One of them, the round goby Neogobius melanostomus, figures among the 100 worst invaders in Europe. Current methods to detect the presence of Ponto-Caspian gobies involve catching or sighting the fish. These approaches are labor intense and not very sensitive. Consequently, populations are usually detected only when they have reached high densities and when management or containment efforts are futile. To improve monitoring, we developed an assay based on the detection of DNA traces (environmental DNA, or eDNA) of Ponto-Caspian gobies in river water. The assay specifically detects invasive goby DNA and does not react to any native fish species. We apply the assay to environmental samples and demonstrate that parameters such as sampling depth, sampling location, extraction protocol, PCR protocol and PCR inhibition greatly impact detection. We further successfully outline the invasion front of Ponto-Caspian gobies in a large river, the High Rhine in Switzerland, and thus demonstrate the applicability of the assay to lotic environments. The eDNA assay requires less time, equipment, manpower, skills, and financial resources than the conventional monitoring methods such as electrofishing, angling or diving. Samples can be taken by untrained individuals, and the assay can be performed by any molecular biologist on a conventional PCR machine. Therefore, this assay enables environment managers to map invaded areas independently of fishermen’s’ reports and fish community monitorings. PMID:26814998

  18. Liquid chromatographic determination of para-toluenesulfonamide in edible fillet tissues from three species of fish

    USGS Publications Warehouse

    Meinertz, J.R.; Schmidt, L.J.; Stehly, G.R.; Gingerich, W.H.

    1999-01-01

    Chloramine-T (N-sodium-N-chloro-p-toluene-sulfonamide) is a candidate therapeutic drug for treating bacterial gill disease, a predominant disease of a variety of fish species. Research has been initiated to obtain the U.S. Food and Drug Administration's (FDA) approval for the use of chloramine-T on a variety of fish species. An attribute of a therapeutic aquaculture drug that must be characterized before the FDA approves its use is depletion of the drug's marker residue (the drug's parent compound or metabolite of highest concentration in an edible tissue). Para-Toluenesulfonamide (p-TSA) is the primary degradation product and marker residue for chloramine-T in rainbow trout. To conduct residue depletion studies for chloramine-T in fish, a robust analytical method sensitive and specific for p-TSA residues in edible fillet tissue from a variety of fish was required. Homogenized fillet tissues from rainbow trout (Oncorhynchus mykiss), walleye (Stizostedion vitreum), and channel catfish (Ictalurus punctatus) were fortified at nominal p-TSA concentrations of 17, 67, 200, 333, and 1000 ng/g. Samples were analyzed by isocratic reversed-phase liquid chromatography (LC) with absorbance detection at 226 nm. Mean recoveries of p-TSA ranged from 77 to 93.17%; relative standard deviations ranged from 1.5 to 14%; method quantitation limits ranged from 13 to 18 ng/g; and method detection limits ranged from 3.8 to 5.2 ng/g. The LC parameters produced p-TSA peaks without coelution of endogenous compounds and excluded chromatographic interference from at least 20 chemicals and drugs of potential use in aquaculture.

  19. Abundance and diel migration of demersal plankton on a tropical coral reef: An acoustic pilot study

    NASA Astrophysics Data System (ADS)

    Ortner, Peter B.; Stamates, S. Jack; Cummings, Shailer R.; Smith, Sharon L.; Lane, Peter V.

    2001-05-01

    Coral reefs serve as the habitat for demersal mesozooplankton and small fishes that migrate into overlying waters at night but spend daylight hours within the reef in part because that habitat provides protection against visual predators. These movements structure energy, mass, and nutrient exchange between the reef habitat and the surrounding waters. Information to date has, however, been predominately qualitative and has not taken advantage of recent advances in biological oceanographic sampling instrumentation. Moreover, what sampling has been done has not been rigorously coupled to synoptic time series of ambient oceanographic conditions. To begin to fill this critical gap we deployed for two 1-month-periods multi-frequency acoustic (TAPS) and optical integrated environmental sensor packages to continuously measure and record the abundance and size distribution of organisms while concomitantly measuring water column chlorophyll, fluorescence, transmittance, temperature, and salinity. During the two periods of high-resolution sampling, and in the intervening six months, we also deployed bottom-mounted ADCP units yielding both vertical current structure and backscatter amplitude distributions. Both video footage and traditional net or pump samples were obtained for ground-truth purposes. [Support provided by the National Marine Fisheries Service/Southeast Fisheries Science Center.

  20. Colony geometry and structural complexity of the endangered species Acropora cervicornis partly explains the structure of their associated fish assemblage.

    PubMed

    Agudo-Adriani, Esteban A; Cappelletto, Jose; Cavada-Blanco, Francoise; Croquer, Aldo

    2016-01-01

    In the past decade, significant efforts have been made to describe fish-habitat associations. However, most studies have oversimplified actual connections between fish assemblages and their habitats by using univariate correlations. The purpose of this study was to identify the features of habitat forming corals that facilitate and influences assemblages of associated species such as fishes. For this we developed three-dimensional models of colonies of Acropora cervicornis to estimate geometry (length and height), structural complexity (i.e., volume, density of branches, etc.) and biological features of the colonies (i.e., live coral tissue, algae). We then correlated these colony characteristics with the associated fish assemblage using multivariate analyses. We found that geometry and complexity were better predictors of the structure of fish community, compared to other variables such as percentage of live coral tissue or algae. Combined, the geometry of each colony explained 40% of the variability of the fish assemblage structure associated with this coral species; 61% of the abundance and 69% of fish richness, respectively. Our study shows that three-dimensional reconstructions of discrete colonies of Acropora cervicornis provides a useful description of the colonial structural complexity and may explain a great deal of the variance in the structure of the associated coral reef fish community. This demonstration of the strongly trait-dependent ecosystem role of this threatened species has important implications for restoration and conservation efforts. PMID:27069801

  1. Colony geometry and structural complexity of the endangered species Acropora cervicornis partly explains the structure of their associated fish assemblage

    PubMed Central

    Cappelletto, Jose; Cavada-Blanco, Francoise; Croquer, Aldo

    2016-01-01

    In the past decade, significant efforts have been made to describe fish-habitat associations. However, most studies have oversimplified actual connections between fish assemblages and their habitats by using univariate correlations. The purpose of this study was to identify the features of habitat forming corals that facilitate and influences assemblages of associated species such as fishes. For this we developed three-dimensional models of colonies of Acropora cervicornis to estimate geometry (length and height), structural complexity (i.e., volume, density of branches, etc.) and biological features of the colonies (i.e., live coral tissue, algae). We then correlated these colony characteristics with the associated fish assemblage using multivariate analyses. We found that geometry and complexity were better predictors of the structure of fish community, compared to other variables such as percentage of live coral tissue or algae. Combined, the geometry of each colony explained 40% of the variability of the fish assemblage structure associated with this coral species; 61% of the abundance and 69% of fish richness, respectively. Our study shows that three-dimensional reconstructions of discrete colonies of Acropora cervicornis provides a useful description of the colonial structural complexity and may explain a great deal of the variance in the structure of the associated coral reef fish community. This demonstration of the strongly trait-dependent ecosystem role of this threatened species has important implications for restoration and conservation efforts. PMID:27069801

  2. Are parasite richness and abundance linked to prey species richness and individual feeding preferences in fish hosts?

    PubMed

    Cirtwill, Alyssa R; Stouffer, Daniel B; Poulin, Robert; Lagrue, Clément

    2016-01-01

    Variations in levels of parasitism among individuals in a population of hosts underpin the importance of parasites as an evolutionary or ecological force. Factors influencing parasite richness (number of parasite species) and load (abundance and biomass) at the individual host level ultimately form the basis of parasite infection patterns. In fish, diet range (number of prey taxa consumed) and prey selectivity (proportion of a particular prey taxon in the diet) have been shown to influence parasite infection levels. However, fish diet is most often characterized at the species or fish population level, thus ignoring variation among conspecific individuals and its potential effects on infection patterns among individuals. Here, we examined parasite infections and stomach contents of New Zealand freshwater fish at the individual level. We tested for potential links between the richness, abundance and biomass of helminth parasites and the diet range and prey selectivity of individual fish hosts. There was no obvious link between individual fish host diet and helminth infection levels. Our results were consistent across multiple fish host and parasite species and contrast with those of earlier studies in which fish diet and parasite infection were linked, hinting at a true disconnect between host diet and measures of parasite infections in our study systems. This absence of relationship between host diet and infection levels may be due to the relatively low richness of freshwater helminth parasites in New Zealand and high host-parasite specificity. PMID:26573385

  3. [Diet and reproduction of the main fish species from the Mesay river (Colombian Amazon region) during the flooding season].

    PubMed

    Blanco-Parra, María del Pilar; Bejarano-Rodríguez, Ivonne

    2006-09-01

    The diet and reproduction of fish communities in three biotopes (river, stream, and lake) of the Mesay floodplain-river complex (Puerto Abeja, Serrania de Chiribiquete National Natural Park, Caquetá, Colombia) were sampled during the "high water" level or flooding period. A total of 79 species of fishes from 15 families and four orders were collected between July and September 2000. The most important items in their diet were fruits and seeds. Approximately 46 % of captured fish were near maturity, and 35 % were mature. The feeding and reproductive behavior of these fish were consistent with other studies on migratory Amazonian species during the high water period, when the floodplain plays an important role in the availability of food and refuge. During this period the fish make use of the vast food availability to accumulate fat reserves that later produce the energy needed for gonadal maturation and breeding migrations. PMID:18491626

  4. Female social response to male sexual harassment in poeciliid fish: a comparison of six species

    PubMed Central

    Dadda, Marco

    2015-01-01

    Sexual harassment is common among poeciliid fish. In some fishes, males show a high frequency of sneak copulation; such sexual activity is costly to the females in terms of foraging efficiency. In mosquitofish (Gambusia holbrooki), when males are present, the distance between females tends to decrease, and this behavior has been interpreted as an adaptive strategy to dilute the costs of male sexual activity. In this study, the tendency to reduce distance in the presence of a male has been investigated in females of six poeciliid species (Girardinus metallicus, Girardinus falcatus, G. holbrooki, Poecilia reticulata, Xiphophorus hellerii, and Xiphophorus mayae) that exhibit different male mating strategies and different levels of sexual activity. Results revealed large interspecific differences in the pattern of female aggregation. Females of species with a high frequency of sneak copulations tended to reduce their social distance in the presence of a male. By contrast, species that rely mainly on courtship showed little or no variation in social distance. The proportion of sneak copulations predicts the degree of variation in female social response, but the amount of total sexual activity does not, suggesting that the change in females' social distance when a male is present may indeed serve to reduce the costs of male sexual harassment. PMID:26483719

  5. The Gut Microbial Community of Midas Cichlid Fish in Repeatedly Evolved Limnetic-Benthic Species Pairs

    PubMed Central

    Frickey, Tancred; Jones, Julia C.; Meyer, Axel

    2014-01-01

    Gut bacterial communities are now known to influence a range of fitness related aspects of organisms. But how different the microbial community is in closely related species, and if these differences can be interpreted as adaptive is still unclear. In this study we compared microbial communities in two sets of closely related sympatric crater lake cichlid fish species pairs that show similar adaptations along the limnetic-benthic axis. The gut microbial community composition differs in the species pair inhabiting the older of two crater lakes. One major difference, relative to other fish, is that in these cichlids that live in hypersaline crater lakes, the microbial community is largely made up of Oceanospirillales (52.28%) which are halotolerant or halophilic bacteria. This analysis opens up further avenues to identify candidate symbiotic or co-evolved bacteria playing a role in adaptation to similar diets and life-styles or even have a role in speciation. Future functional and phylosymbiotic analyses might help to address these issues. PMID:24733403

  6. The gut microbial community of Midas cichlid fish in repeatedly evolved limnetic-benthic species pairs.

    PubMed

    Franchini, Paolo; Fruciano, Carmelo; Frickey, Tancred; Jones, Julia C; Meyer, Axel

    2014-01-01

    Gut bacterial communities are now known to influence a range of fitness related aspects of organisms. But how different the microbial community is in closely related species, and if these differences can be interpreted as adaptive is still unclear. In this study we compared microbial communities in two sets of closely related sympatric crater lake cichlid fish species pairs that show similar adaptations along the limnetic-benthic axis. The gut microbial community composition differs in the species pair inhabiting the older of two crater lakes. One major difference, relative to other fish, is that in these cichlids that live in hypersaline crater lakes, the microbial community is largely made up of Oceanospirillales (52.28%) which are halotolerant or halophilic bacteria. This analysis opens up further avenues to identify candidate symbiotic or co-evolved bacteria playing a role in adaptation to similar diets and life-styles or even have a role in speciation. Future functional and phylosymbiotic analyses might help to address these issues. PMID:24733403

  7. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): Pink salmon

    SciTech Connect

    Bonar, S.A.; Pauley, G.B.; Thomas, G.L.

    1989-01-01

    Species profiles are literature summaries of the taxonomy, morphology, range, life history, and environmental requirements of coastal aquatic species. They are designed to assist in environmental impact assessment. The pink salmon, often called humpback salmon or humpy, is easily identified by its extremely small scales (150 to 205) on the lateral line. They are the most abundant of the Pacific salmon species and spawn in North American and Asian streams bordering the Pacific and Arctic Oceans. They have a very simple two-year life cycle, which is so invariable that fish running in odd-numbered years are isolated from fish running in even-numbered years so that no gene flow occurs between them. Adults spawn in the fall and the young fry emerge in the spring. The pink salmon is less desirable in commercial and sport catches than most other salmon because of its small size and its soft pale flesh. The Puget Sound region of Washington State is the southern geographic limit of streams supporting major pink salmon runs in the eastern North Pacific. Pink salmon runs are presently only in odd-numbered years in this region. Optimum water temperatures for spawning range from 7.2 to 12.8/degree/C. Productive pink salmon streams have less than 5.0% by volume of fine sediments (less than or equal to0.8 mm). 87 refs., 5 figs., 1 tab.

  8. Female social response to male sexual harassment in poeciliid fish: a comparison of six species.

    PubMed

    Dadda, Marco

    2015-01-01

    Sexual harassment is common among poeciliid fish. In some fishes, males show a high frequency of sneak copulation; such sexual activity is costly to the females in terms of foraging efficiency. In mosquitofish (Gambusia holbrooki), when males are present, the distance between females tends to decrease, and this behavior has been interpreted as an adaptive strategy to dilute the costs of male sexual activity. In this study, the tendency to reduce distance in the presence of a male has been investigated in females of six poeciliid species (Girardinus metallicus, Girardinus falcatus, G. holbrooki, Poecilia reticulata, Xiphophorus hellerii, and Xiphophorus mayae) that exhibit different male mating strategies and different levels of sexual activity. Results revealed large interspecific differences in the pattern of female aggregation. Females of species with a high frequency of sneak copulations tended to reduce their social distance in the presence of a male. By contrast, species that rely mainly on courtship showed little or no variation in social distance. The proportion of sneak copulations predicts the degree of variation in female social response, but the amount of total sexual activity does not, suggesting that the change in females' social distance when a male is present may indeed serve to reduce the costs of male sexual harassment. PMID:26483719

  9. Agonistic behavior among three stocked trout species in a novel reservoir fish community

    USGS Publications Warehouse

    Budy, Phaedra; Hafen, Konrad

    2015-01-01

    The popularity of reservoirs to support sport fisheries has led to the stocking of species that did not co-evolve, creating novel reservoir fish communities. In Utah, the Bear Lake strain of Bonneville Cutthroat Trout Oncorhynchus clarkii utah and tiger trout (female Brown Trout Salmo trutta × male Brook Trout Salvelinus fontinalis) are being more frequently added to a traditional stocking regimen consisting primarily of Rainbow TroutO. mykiss. Interactions between these three predatory species are not well understood, and studies evaluating community interactions have raised concern for an overall decrease of trout condition. To evaluate the potential for negative interactions among these species, we tested aggression in laboratory aquaria using three-species and pairwise combinations at three densities. Treatments were replicated before and after feeding. During the three-species trials Rainbow Trout initiated 24.8 times more aggressive interactions than Cutthroat Trout and 10.2 times more aggressive interactions than tiger trout, and tiger trout exhibited slightly (1.9 times) more aggressive initiations than Cutthroat Trout. There was no significant difference in behavior before versus after feeding for any species, and no indication of increased aggression at higher densities. Although Rainbow Trout in aquaria may benefit from their bold, aggressive behavior, given observations of decreased relative survival in the field, these benefits may be outweighed in reservoirs, possibly through unnecessary energy expenditure and exposure to predators.

  10. Variation in heat shock proteins within tropical and desert species of poeciliid fishes.

    PubMed

    Norris, C E; diIorio, P J; Schultz, R J; Hightower, L E

    1995-11-01

    The 70-kilodalton heat shock protein (hsp70) family of molecular chaperones, which contains both stress-inducible and normally abundant constitutive members, is highly conserved across distantly related taxa. Analysis of this protein family in individuals from an outbred population of tropical topminnows, Poeciliopsis gracilis, showed that while constitutive hsp70 family members showed no variation in protein isoforms, inducibly synthesized hsp70 was polymorphic. Several species of Poeciliopsis adapted to desert environments exhibited lower levels of inducible hsp70 polymorphism than the tropical species, but constitutive forms were identical to those in P. gracilis, as they were in the confamilial species Gambusia affinis. These differences suggest that inducible and constitutive members of this family are under different evolutionary constraints and may indicate differences in their function within the cell. Also, northern desert species of Poeciliopsis synthesize a subset of the inducible hsp70 isoforms seen in tropical species. This distribution supports the theory that ancestral tropical fish migrated northward and colonized desert streams; the subsequent decrease in variation of inducible hsp70 may have been due to genetic drift or a consequence of adaptation to the desert environment. Higher levels of variability were found when the 30-kilodalton heat shock protein (hsp30) family was analyzed within different strains of two desert species of Poeciliopsis and also in wild-caught individuals of Gambusia affinis. In both cases the distribution of hsp30 isoform diversity was similar to that seen previously with allozyme polymorphisms. PMID:8524039

  11. Comparative movements of four large fish species in a lowland river.

    PubMed

    Koehn, J D; Nicol, S J

    2016-04-01

    A multi-year radio-telemetry data set was used to comparatively examine the concurrent movements of the adults of three large-bodied Australian native freshwater fishes (Murray cod Maccullochella peelii, trout cod Maccullochella macquariensis and golden perch Macquaria ambigua) and the introduced carp Cyprinus carpio. The study was conducted over a reach scale in the regulated Murray River in south-eastern Australia. Differences were identified in the movements among these species. The predominant behaviour was the use of small movements (<1 km) for all species, and although larger-scale movements (>1 km) did occur, the frequency varied considerably among species. Large-scale movements were least evident for M. macquariensis and more common for M. ambigua and C. carpio with these two species also having a greater propensity to change locations. Macquaria ambigua displayed the largest movements and more M. ambigua moved on a 'continual' basis. Although a degree of site fidelity was evident for all species, the highest levels were exhibited by M. macquariensis and M. peelii. Homing was also evident to some degree in all species, but was greatest for M. peelii. PMID:26919062

  12. Spatial distribution and species composition of small pelagic fishes in the Gulf of California.

    PubMed

    Lanz, Edgar; Nevárez-Martínez, Manuel O; López-Martínez, Juana; Dworak, Juan A

    2008-06-01

    Traditional regionalization methods in fisheries based on provinces or major fishing areas, includes large and arbitrary grids in which basic statistics or inferences on distribution or abundance are made. We describe a method for regionalization and analysis of fishing activities for small pelagic fisheries in the Gulf of California based on spatial patterns of landing and catch data in a Geographic Information System (GIS) environment. A fisheries database from logbooks with spatial attributes from October 2002 to June 2007 was analyzed. Landings and catching data were transformed to a Weighted Region Index (WRI) by using fuzzy logic operators. The WRI revealed fishing action centers characterized by areas with the highest WRI values, and a hierarchy for the relative importance of the regions was established. Guaymas, Desemboque de Caborca, Isla Patos, and Bahia San Rafael they were the most prominent ones. An analysis of the relative frequency of species composition showed that the Pacific sardine had an over 80 % abundance in the midriff islands, and remained as the most important in the upper gulf regions, while in the central part of the gulf, relative abundances of Pacific sardine and Northern anchovy were more balanced. Relative abundance of mackerel was significantly larger around Isla Patos than in any other place. Guaymas had the largest relative composition of Northern anchovy and the lowest values for Pacific sardine. Desemboque de Caborca showed the largest homogeneity in species relative composition. It is important to highlight that this results come from in situ data, while the results previously reported come from landing statistics by port. Therefore, the present method acknowledges the spatial differences of species by regions, additional to the traditional time series analysis. PMID:19256429

  13. [Aspects of animal welfare and species protection in the international trade of ornamental fish and air transport to Germany].

    PubMed

    Wöhr, Anna-Caroline; Hildebrand, Heike; Unshelm, Jürgen; Erhard, Michael Helmut

    2005-01-01

    The number of ornamental fish kept in German aquariums is rising, but the supply of offspring is not sufficient to meet the needs of the fish enthusiasts. Therefore millions of ornamental fish from foreign countries are being imported to Germany. This provokes a number of new problems regarding the protection of species and the animals' welfare during transportation. For the assessment of the transport conditions, 1000 shipments of ornamental fishes were evaluated at the Rhein-Main-Airport Frankfurt, Germany. Water samples were taken from 100 shipments and were examined for anaesthetics. The results are disturbing: 41% of the shipments have total transportation times between 31-42 h resulting in an oxygen deficit in the transport bags (5.2%) and dead ornamental fish. Also damage of the transportation containers, high fish densities as well as drastic size differences amoung the fish in one transport bag were noticeable. In 99% of the cases, formal defects could be noted. The German association of pet stores has declared that fish belonging to three special fresh water families should not be kept in an aquarium, but 1 200 of such fish were imported. The HPLC analysis of the water samples revealed an additive. The non-declared anaesthetic 2-phenoxyethanol was present in all samples taken from shipments based out of Singapore. The results emphasize that improvements are urgently necessary in the control of the air transport and trade with Ornamental fish. PMID:15918482

  14. Response latencies to postural disturbances in three species of teleostean fishes.

    PubMed

    Webb, Paul W

    2004-02-01

    Flow in aquatic systems is characterized by unsteadiness that creates destabilizing perturbations. Appropriate correction responses depend on response latency. The time between a disturbance induced by either removal of a flow refuge or striking various parts of the body with a narrow water jet was measured for three species, chosen as examples of modes in teleostean body/fin organization that are expected to affect stability. Creek chub Semotilus atromaculatus is representative of fusiform-bodied soft-rayed teleosts, smallmouth bass Micropterus dolomieu of fusiform-bodied spiny-rayed forms and bluegill Lepomis macrochirus of deep-bodied spiny-rayed forms. Observations were made at 23 degrees C. Loss of refuge resulted in a surge that fish corrected by starting to swim within 129+/-29 ms (mean +/- 2 S.E.M.) for chub, which was significantly shorter than minimal times of approximately 200 ms for bluegill and bass. Slips and heaves induced by water jets initially resulted in extension of the median and paired fins that would damp growth of the disturbance, but otherwise these disturbances were ignored. Yaws and pitches were more likely to cause fish to swim away from the stimulus, making corrections as they did so. There were no differences in latencies for slip, heave, yaw and pitch disturbances within each species, but latencies varied among species. For these disturbances, responses averaged 123+/-19 ms for chub, again significantly smaller than those of 201+/-24 ms for bass and 208+/-52 ms for bluegill. Values for the two centrarchids were not significantly different (P>0.08). The response latency for rolling disturbances did not differ among species but was significantly smaller than that for other disturbances, with an overall latency of 70+/-15 ms. The greater responsiveness to hydrostatic rolling instability is attributed to functions requiring an upright posture and differences among species in habitat preferences. PMID:14766954

  15. Host Fish of Four Species of Unionid Mussels and the Dispersal of their Larvae with the Fish Movement

    NASA Astrophysics Data System (ADS)

    Kondo, Mio; Ito, Kengo; Senge, Masateru

    Host fish of each mussel was examined in a biotope pond, a drainage canal and fishway between them in Gifu Prefecture from May to October 2008. The main host fish was Zacco platypus in Unio douglasiae and Lanceolaria grayana, Nipponocypris sieboldii in Anodonta sp. and Pronodularia japonensis. In the fish caught at fishway, intensity and total number of glochidium were more the descending fish from the biotope pond than the ascending one from the drainage canal, which suggests that the biotope pond is now the base of supply of juveniles to the neighboring areas.

  16. Modelled three-dimensional suction accuracy predicts prey capture success in three species of centrarchid fishes

    PubMed Central

    Kane, Emily A.; Higham, Timothy E.

    2014-01-01

    Prey capture is critical for survival, and differences in correctly positioning and timing a strike (accuracy) are likely related to variation in capture success. However, an ability to quantify accuracy under natural conditions, particularly for fishes, is lacking. We developed a predictive model of suction hydrodynamics and applied it to natural behaviours using three-dimensional kinematics of three centrarchid fishes capturing evasive and non-evasive prey. A spheroid ingested volume of water (IVW) with dimensions predicted by peak gape and ram speed was verified with known hydrodynamics for two species. Differences in capture success occurred primarily with evasive prey (64–96% success). Micropterus salmoides had the greatest ram and gape when capturing evasive prey, resulting in the largest and most elongate IVW. Accuracy predicted capture success, although other factors may also be important. The lower accuracy previously observed in M. salmoides was not replicated, but this is likely due to more natural conditions in our study. Additionally, we discuss the role of modulation and integrated behaviours in shaping the IVW and determining accuracy. With our model, accuracy is a more accessible performance measure for suction-feeding fishes, which can be used to explore macroevolutionary patterns of prey capture evolution. PMID:24718455

  17. Conversion of carotenoids into vitamins A(1) and A(2) in two species of freshwater fish.

    PubMed

    Gross, J; Budowski, P

    1966-12-01

    1. Examination of two zooplankton species predominating in fish ponds, Daphnia magna and Chironomus larvae, revealed the presence of alpha- and beta-carotene, echinenone, canthaxanthin and 3-hydroxy-4-oxo-beta-carotene in Daphnia, and beta-carotene and cryptoxanthin ester in Chironomus. No specific provitamins A(2) (containing a 3,4-dehydro-beta-ionone ring) were detected. 2. Guppies (Lebistes reticulatus) and platies (Xiphophorus variatus) were found to form vitamin A from beta-carotene and from its oxygen-containing derivatives isozeaxanthin, canthaxanthin and astaxanthin. Slight conversion into vitamin A(2) seemed to occur simultaneously. 3,4-Dehydro-3'-hydroxy-beta-carotene formed little vitamin A, and the latter was mainly of the A(2) type. Lutein was devoid of provitamin A properties. 3. In addition to vitamin A, beta-carotene was detected in fish receiving the 4-oxo- and 4-hydroxy-carotenoids. A reaction scheme for the conversion of carotenoids into retinal and and 3,4-dehydroretinal is presented. 4. It is concluded that natural 4-oxo derivatives of beta-carotene may play a significant role as vitamin A precursors for fish. PMID:16742455

  18. Conversion of carotenoids into vitamins A1 and A2 in two species of freshwater fish

    PubMed Central

    Gross, Jeana; Budowski, P.

    1966-01-01

    1. Examination of two zooplankton species predominating in fish ponds, Daphnia magna and Chironomus larvae, revealed the presence of α- and β-carotene, echinenone, canthaxanthin and 3-hydroxy-4-oxo-β-carotene in Daphnia, and β-carotene and cryptoxanthin ester in Chironomus. No specific provitamins A2 (containing a 3,4-dehydro-β-ionone ring) were detected. 2. Guppies (Lebistes reticulatus) and platies (Xiphophorus variatus) were found to form vitamin A from β-carotene and from its oxygen-containing derivatives isozeaxanthin, canthaxanthin and astaxanthin. Slight conversion into vitamin A2 seemed to occur simultaneously. 3,4-Dehydro-3′-hydroxy-β-carotene formed little vitamin A, and the latter was mainly of the A2 type. Lutein was devoid of provitamin A properties. 3. In addition to vitamin A, β-carotene was detected in fish receiving the 4-oxo- and 4-hydroxy-carotenoids. A reaction scheme for the conversion of carotenoids into retinal and and 3,4-dehydroretinal is presented. 4. It is concluded that natural 4-oxo derivatives of β-carotene may play a significant role as vitamin A precursors for fish. PMID:16742455

  19. Arsenolipids show different profiles in muscle tissues of four commercial fish species.

    PubMed

    Amayo, Kenneth O; Raab, Andrea; Krupp, Eva M; Marschall, Talke; Horsfall, Michael; Feldmann, Jörg

    2014-04-01

    Identification of arsenolipids in biological samples is today a challenge and in particular the need for speciation data for toxicological assessment. Fish is one of the major contributors of arsenic in diet. However, the majority of work in this area has only focused on the water soluble compounds. The aim of this study is to provide some data on total arsenic and in particular to gain insights into the types of arsenolipids in the muscle tissues of four commercial and commonly consumed fish species. Determination of total arsenic was carried out by ICP-MS following microwave-assisted acid digestion of the samples and the concentrations found for total arsenic in the muscles ranged from 4.8 to 6.0μg/gd.w. Sequential extraction was carried out using hexane and MeOH/DCM followed by reversed phase HPLC-ICP-MS/ESI-MS analysis of the MeOH/DCM fraction. Eight arsenolipids including three arsenic fatty acids (AsFAs) and five arsenic hydrocarbons (AsHCs) were identified. The result showed that fish with higher arsenolipid (AsLp) content (brill and sardine) are dominated by AsHC, while those with the smaller proportion of AsLp (mackerel and red mullet) have predominately arsenic in the form of AsFA. PMID:24332310

  20. Fishes of the hadal zone including new species, in situ observations and depth records of Liparidae

    NASA Astrophysics Data System (ADS)

    Linley, Thomas D.; Gerringer, Mackenzie E.; Yancey, Paul H.; Drazen, Jeffrey C.; Weinstock, Chloe L.; Jamieson, Alan J.

    2016-08-01

    Observations and records for fish exceeding 6000 m deep are few and often spurious. Recent developments in accessing and sampling the hadal zone 6000-11,000 m) have led to an acceleration in new findings in the deep subduction trenches, particularly in the Pacific Ocean. This study describes the discovery of two new species of snailfish (Liparidae) from the Mariana Trench; the 'Mariana snailfish' (6198-8076 m) and the 'Ethereal snailfish' (7939-8145 m). These new findings represent respectively the deepest known specimen caught with corroborating depth data, and the deepest fish seen alive. Further specimens and observations of the Kermadec Trench snailfish, Notoliparis kermadecensis, are also presented, as well as the first hadal records of Synaphobranchidae and Zoarcidae (6068 and 6145 m respectively) and a depth extension for the Macrouridae (maximum depth now 7012 m). Details of these new snailfish specimens caught by baited trap and behaviour observations filmed by baited cameras are presented. An updated assessment of fishes from hadal depths is also reported.

  1. Testing Three Species Distribution Modelling Strategies to Define Fish Assemblage Reference Conditions for Stream Bioassessment and Related Applications

    PubMed Central

    Rose, Peter M.; Kennard, Mark J.; Moffatt, David B.; Sheldon, Fran; Butler, Gavin L.

    2016-01-01

    Species distribution models are widely used for stream bioassessment, estimating changes in habitat suitability and identifying conservation priorities. We tested the accuracy of three modelling strategies (single species ensemble, multi-species response and community classification models) to predict fish assemblages at reference stream segments in coastal subtropical Australia. We aimed to evaluate each modelling strategy for consistency of predictor variable selection; determine which strategy is most suitable for stream bioassessment using fish indicators; and appraise which strategies best match other stream management applications. Five models, one single species ensemble, two multi-species response and two community classification models, were calibrated using fish species presence-absence data from 103 reference sites. Models were evaluated for generality and transferability through space and time using four external reference site datasets. Elevation and catchment slope were consistently identified as key correlates of fish assemblage composition among models. The community classification models had high omission error rates and contributed fewer taxa to the ‘expected’ component of the taxonomic completeness (O/E50) index than the other strategies. This potentially decreases the model sensitivity for site impact assessment. The ensemble model accurately and precisely modelled O/E50 for the training data, but produced biased predictions for the external datasets. The multi-species response models afforded relatively high accuracy and precision coupled with low bias across external datasets and had lower taxa omission rates than the community classification models. They inherently included rare, but predictable species while excluding species that were poorly modelled among all strategies. We suggest that the multi-species response modelling strategy is most suited to bioassessment using freshwater fish assemblages in our study area. At the species level

  2. Morphometrics and levels of infections of digeneans in belonid fish species off the coast of Tunisia.

    PubMed

    Châari, M; Derbel, H; Neifar, L

    2016-09-01

    Three species of belonid fish, Belone belone gracilis Lowe, 1839, Belone svetovidovi Collette & Parin, 1970 and Tylosurus acus imperialis (Rafinesque, 1810), caught off the eastern Tunisian coast were infected with eight species of Digenea. Among these, four species were commonly found in B. b. gracilis and are new host records for B. svetovidovi. They are: Lecithostaphylus retroflexus (Molin, 1859), Tergestia acanthocephala (Stossich, 1887) Stossich, 1899 and Aponurus laguncula Looss, 1907 in the intestine, and the metacercaria Condylocotyla pilodora Pearson and Prévot, 1985 in the pericardial sac. Four other digenean species were recorded from T. a. imperialis: Lecithostaphylus tylosuri Châari et al., 2013 and Tetrochetus coryphaenae Yamaguti, 1934 in the intestine, Oesophagotrema mediterranea Châari et al., 2011 in the oesophagus and vomer teeth, and Sclerodistomoides pacificus Kamegai, 1971 in the gall bladder. Tetrochetus coryphaenae and S. pacificus represent new host and geographical records. The spatial variation of digenean parasites within belonid host species is discussed. PMID:26278880

  3. High-resolution mapping reveals hundreds of genetic incompatibilities in hybridizing fish species

    PubMed Central

    Schumer, Molly; Cui, Rongfeng; Powell, Daniel L; Dresner, Rebecca; Rosenthal, Gil G; Andolfatto, Peter

    2014-01-01

    Hybridization is increasingly being recognized as a common process in both animal and plant species. Negative epistatic interactions between genes from different parental genomes decrease the fitness of hybrids and can limit gene flow between species. However, little is known about the number and genome-wide distribution of genetic incompatibilities separating species. To detect interacting genes, we perform a high-resolution genome scan for linkage disequilibrium between unlinked genomic regions in naturally occurring hybrid populations of swordtail fish. We estimate that hundreds of pairs of genomic regions contribute to reproductive isolation between these species, despite them being recently diverged. Many of these incompatibilities are likely the result of natural or sexual selection on hybrids, since intrinsic isolation is known to be weak. Patterns of genomic divergence at these regions imply that genetic incompatibilities play a significant role in limiting gene flow even in young species. DOI: http://dx.doi.org/10.7554/eLife.02535.001 PMID:24898754

  4. Are the Most Plastic Species the Most Abundant Ones? An Assessment Using a Fish Assemblage

    PubMed Central

    Vidal, Nicolás; Zaldúa, Natalia; D'Anatro, Alejandro; Naya, Daniel E.

    2014-01-01

    Few studies have evaluated phenotypic plasticity at the community level, considering, for example, plastic responses in an entire species assemblage. In addition, none of these studies have addressed the relationship between phenotypic plasticity and community structure. Within this context, here we assessed the magnitude of seasonal changes in digestive traits (seasonal flexibility), and of changes during short-term fasting (flexibility during fasting), occurring in an entire fish assemblage, comprising ten species, four trophic levels, and a 37-fold range in body mass. In addition, we analyzed the relationship between estimates of digestive flexibility and three basic assemblage structure attributes, i.e., species trophic position, body size, and relative abundance. We found that: (1) Seasonal digestive flexibility was not related with species trophic position or with body size; (2) Digestive flexibility during fasting tended to be inversely correlated with body size, as expected from scaling relationships; (3) Digestive flexibility, both seasonal and during fasting, was positively correlated with species relative abundance. In conclusion, the present study identified two trends in digestive flexibility in relation to assemblage structure, which represents an encouraging departure point in the search of general patterns in phenotypic plasticity at the local community scale. PMID:24651865

  5. Variable survival across low pH gradients in freshwater fish species.

    PubMed

    Jellyman, P G; Harding, J S

    2014-11-01

    A series of 14 day experiments was conducted on five common New Zealand fish species (redfin bully Gobiomorphus huttoni, inanga Galaxias maculatus, brown trout Salmo trutta, longfin eel Anguilla dieffenbachii and koaro Galaxias brevipinnis) to assess the effect of pH on survival and changes in body mass. No species survived in water of pH <4 although there was 100% survival of all adults at pH 4.5, G. maculatus larvae were also tested and had high mortality at this pH. Results suggest that adults are tolerant of low-pH waters; however, successful remediation of anthropogenically acidified streams will require an understanding of the susceptibility to low pH on different life cycle stages. PMID:25230112

  6. Karyotyping of Brachypodium pinnatum (2n = 18) chromosomes using cross-species BAC-FISH.

    PubMed

    Wolny, Elzbieta; Fidyk, Wojciech; Hasterok, Robert

    2013-04-01

    Identification of individual chromosomes in a complement is usually a difficult task in the case of most plant species, especially for those with small, numerous, and morphologically uniform chromosomes. In this paper, we demonstrate that the landmarks produced by cross-species fluorescence in situ hybridisation (FISH) of Brachypodium distachyon derived bacterial artificial chromosome (BAC) clones can be used for discrimination of Brachypodium pinnatum (2n = 18) chromosomes. Selected sets of clones were hybridised in several sequential experiments performed on exactly the same chromosome spreads, using reprobing of cytological preparations. Analysis of the morphometric features of B. pinnatum chromosomes was performed to establish their total length, the position of centromeres, and the position of BAC-based landmarks in relation to the centromere, thereby enabling their effective karyotyping, which is a prerequisite for more complex study of the grass genome structure and evolution at the cytomolecular level. PMID:23706077

  7. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): Sockeye salmon

    SciTech Connect

    Pauley, G.B.; Risher, R.; Thomas, G.L. . Cooperative Fishery Research Unit)

    1989-12-01

    Species profiles are literature summaries of the taxonomy, morphology, range, life history, and environmental requirements of coastal aquatic species. They are designed to assist in environmental impact assessment. Sockeye salmon always spawn in a lake associated with a river or in the outlet river. The young fish use the lakes for rearing. The brilliant red flesh is highly prized by commercial and sport fishermen. Washington State and the Columbia River are the southern limit of reproducing populations of sockeye salmon. Sockeye salmon are primarily plankton feeders. They appear to thrive best at temperatures of 10--15{degree}C. Ocean distribution does not appear to be limited by salinity. Adults require gravel with adequate water circulation for successful spawning and egg hatching. 100 refs., 6 figs., 3 tabs.