20th-century glacial-marine sedimentation in Vitus Lake, Bering Glacier, Alaska, U.S.A.

USGS Publications Warehouse

Molnia, B.F.; Post, A.; Carlson, P.R.

1996-01-01

Vitus Lake, the ice-marginal basin at the southeastern edge of Bering Glacier, Alaska, U.S.A., is a site of modern, rapid, glacial-marine sedimentation. Rather than being a fresh-water lake, Vitus Lake is a tidally influenced, marine to brackish embayment connected to the Pacific Ocean by an inlet, the Seal River. Vitus Lake consists of five deep bedrock basins, separated by interbasinal highs. Glacial erosion has cut these basins as much as 250 m below sea level. High-resolution seismic reflection surveys conducted in 1991 and 1993 of four of Vitus Lake's basins reveal a complex, variable three-component acoustic stratigraphy. Although not fully sampled, the stratigraphy is inferred to be primarily glacial-marine units of (1) basal contorted and deformed glacial-marine and glacial sediments deposited by basal ice-contact processes and submarine mass-wasting; (2) acoustically well-stratified glacial-marine sediment, which unconformably overlies the basal unit and which grades upward into (3) acoustically transparent or nearly transparent glacial-marine sediment. Maximum thicknesses of conformable glacial-marine sediment exceed 100 m. All of the acoustically transparent and stratified deposits in Vitus Lake are modern in age, having accumulated between 1967 and 1993. The basins where these three-part sequences of "present-day" glacial-marine sediment are accumulating are themselves cut into older sequences of stratified glacial and glacial-marine deposits. These older units outcrop on the islands in Vitus Lake. In 1967, as the result of a major surge, glacier ice completely filled all five basins. Subsequent terminus retreat, which continued through August 1993, exposed these basins, providing new locations for glacial-marine sediment accumulation. A correlation of sediment thicknesses measured from seismic profiles at specific locations within the basins, with the year that each location became ice-free, shows that the sediment accumulation at some locations

The life sulfuric: microbial ecology of sulfur cycling in marine sediments

PubMed Central

Wasmund, Kenneth; Mußmann, Marc

2017-01-01

Summary Almost the entire seafloor is covered with sediments that can be more than 10 000 m thick and represent a vast microbial ecosystem that is a major component of Earth's element and energy cycles. Notably, a significant proportion of microbial life in marine sediments can exploit energy conserved during transformations of sulfur compounds among different redox states. Sulfur cycling, which is primarily driven by sulfate reduction, is tightly interwoven with other important element cycles (carbon, nitrogen, iron, manganese) and therefore has profound implications for both cellular‐ and ecosystem‐level processes. Sulfur‐transforming microorganisms have evolved diverse genetic, metabolic, and in some cases, peculiar phenotypic features to fill an array of ecological niches in marine sediments. Here, we review recent and selected findings on the microbial guilds that are involved in the transformation of different sulfur compounds in marine sediments and emphasise how these are interlinked and have a major influence on ecology and biogeochemistry in the seafloor. Extraordinary discoveries have increased our knowledge on microbial sulfur cycling, mainly in sulfate‐rich surface sediments, yet many questions remain regarding how sulfur redox processes may sustain the deep‐subsurface biosphere and the impact of organic sulfur compounds on the marine sulfur cycle. PMID:28419734

A small-scale, portable method for extracting microplastics from marine sediments.

PubMed

Coppock, Rachel L; Cole, Matthew; Lindeque, Penelope K; Queirós, Ana M; Galloway, Tamara S

2017-11-01

Microplastics (plastic particles, 0.1 μm-5 mm in size) are widespread marine pollutants, accumulating in benthic sediments and shorelines the world over. To gain a clearer understanding of microplastic availability to marine life, and the risks they pose to the health of benthic communities, ecological processes and food security, it is important to obtain accurate measures of microplastic abundance in marine sediments. To date, methods for extracting microplastics from marine sediments have been disadvantaged by complexity, expense, low extraction efficiencies and incompatibility with very fine sediments. Here we present a new, portable method to separate microplastics from sediments of differing types, using the principle of density floatation. The Sediment-Microplastic Isolation (SMI) unit is a custom-built apparatus which consistently extracted microplastics from sediments in a single step, with a mean efficiency of 95.8% (±SE 1.6%; min 70%, max 100%). Zinc chloride, at a density of 1.5 g cm -3 , was deemed an effective and relatively inexpensive floatation media, allowing fine sediment to settle whilst simultaneously enabling floatation of dense polymers. The method was validated by artificially spiking sediment with low and high density microplastics, and its environmental relevance was further tested by extracting plastics present in natural sediment samples from sites ranging in sediment type; fine silt/clay (mean size 10.25 ± SD 3.02 μm) to coarse sand (mean size 149.3 ± SD 49.9 μm). The method presented here is cheap, reproducible and is easily portable, lending itself for use in the laboratory and in the field, eg. on board research vessels. By employing this method, accurate estimates of microplastic type, distribution and abundance in natural sediments can be achieved, with the potential to further our understanding of the availability of microplastics to benthic organisms. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All

The life sulfuric: microbial ecology of sulfur cycling in marine sediments.

PubMed

Wasmund, Kenneth; Mußmann, Marc; Loy, Alexander

2017-08-01

Almost the entire seafloor is covered with sediments that can be more than 10 000 m thick and represent a vast microbial ecosystem that is a major component of Earth's element and energy cycles. Notably, a significant proportion of microbial life in marine sediments can exploit energy conserved during transformations of sulfur compounds among different redox states. Sulfur cycling, which is primarily driven by sulfate reduction, is tightly interwoven with other important element cycles (carbon, nitrogen, iron, manganese) and therefore has profound implications for both cellular- and ecosystem-level processes. Sulfur-transforming microorganisms have evolved diverse genetic, metabolic, and in some cases, peculiar phenotypic features to fill an array of ecological niches in marine sediments. Here, we review recent and selected findings on the microbial guilds that are involved in the transformation of different sulfur compounds in marine sediments and emphasise how these are interlinked and have a major influence on ecology and biogeochemistry in the seafloor. Extraordinary discoveries have increased our knowledge on microbial sulfur cycling, mainly in sulfate-rich surface sediments, yet many questions remain regarding how sulfur redox processes may sustain the deep-subsurface biosphere and the impact of organic sulfur compounds on the marine sulfur cycle. © 2017 The Authors. Environmental Microbiology published by Society for Applied Microbiology and John Wiley & Sons Ltd.

Google Earth-Based Grand Tours of the World's Ocean Basins and Marine Sediments

NASA Astrophysics Data System (ADS)

St John, K. K.; De Paor, D. G.; Suranovic, B.; Robinson, C.; Firth, J. V.; Rand, C.

2016-12-01

The GEODE project has produced a collection of Google Earth-based marine geology teaching resources that offer grand tours of the world's ocean basins and marine sediments. We use a map of oceanic crustal ages from Müller et al (2008; doi:10.1029/2007GC001743), and a set of emergent COLLADA models of IODP drill core data as a basis for a Google Earth tour introducing students to the world's ocean basins. Most students are familiar with basic seafloor spreading patterns but teaching experience suggests that few students have an appreciation of the number of abandoned ocean basins on Earth. Students also lack a valid visualization of the west Pacific where the oldest crust forms an isolated triangular patch and the ocean floor becomes younger towards the subduction zones. Our tour links geographic locations to mechanical models of rifting, seafloor spreading, subduction, and transform faulting. Google Earth's built-in earthquake and volcano data are related to ocean floor patterns. Marine sediments are explored in a Google Earth tour that draws on exemplary IODP core samples of a range of sediment types (e.g., turbidites, diatom ooze). Information and links are used to connect location to sediment type. This tour compliments a physical core kit of core catcher sections that can be employed for classroom instruction (geode.net/marine-core-kit/). At a larger scale, we use data from IMLGS to explore the distribution of the marine sediments types in the modern global ocean. More than 2,500 sites are plotted with access to original data. Students are guided to compare modern "type sections" of primary marine sediment lithologies, as well as examine site transects to address questions of bathymetric setting, ocean circulation, chemistry (e.g., CCD), and bioproductivity as influences on modern seafloor sedimentation. KMZ files, student exercises, and tips for instructors are available at geode.net/exploring-marine-sediments-using-google-earth.

Experimental investigation on consistency limits of cement and lime-stabilized marine sediments.

PubMed

Wang, DongXing; Zentar, Rachid; Abriak, Nor Edine; Xu, WeiYa

2012-06-01

This paper presents the effects of treatments with cement and lime on the consistency limits of marine sediments dredged from Dunkirk port. The Casagrande percussion test and the fall cone test were used to determine the liquid limits of raw sediments and treated marine sediments. For the evaluation of the plastic limits, the results of the fall cone test were compared with those obtained by the rolling test method. The relationship between the water contents and the penetration depths for the determination of the liquid limit and the plastic limit was explored. Liquid limits at 15.5 mm and plastic limits at 1.55 mm seem to be a more appropriate choice for the studied marine sediments compared with the limits determined by other used prediction methods. Finally, the effect of cement treatment and lime treatment on the Casagrande classification of the studied sediments was investigated according to the different prediction results.

Global diffusive fluxes of methane in marine sediments

NASA Astrophysics Data System (ADS)

Egger, Matthias; Riedinger, Natascha; Mogollón, José M.; Jørgensen, Bo Barker

2018-06-01

Anaerobic oxidation of methane provides a globally important, yet poorly constrained barrier for the vast amounts of methane produced in the subseafloor. Here we provide a global map and budget of the methane flux and degradation in diffusion-controlled marine sediments in relation to the depth of the methane oxidation barrier. Our new budget suggests that 45-61 Tg of methane are oxidized with sulfate annually, with approximately 80% of this oxidation occurring in continental shelf sediments (<200 m water depth). Using anaerobic oxidation as a nearly quantitative sink for methane in steady-state diffusive sediments, we calculate that 3-4% of the global organic carbon flux to the seafloor is converted to methane. We further report a global imbalance of diffusive methane and sulfate fluxes into the sulfate-methane transition with no clear trend with respect to the corresponding depth of the methane oxidation barrier. The observed global mean net flux ratio between sulfate and methane of 1.4:1 indicates that, on average, the methane flux to the sulfate-methane transition accounts for only 70% of the sulfate consumption in the sulfate-methane transition zone of marine sediments.

DISSOLVED-COLLOIDAL PARTITIONING OF MOBILIZED METALS DURING RESUSPENSION OF MARINE SEDIMENTS

EPA Science Inventory

Sediments in many urban estuaries are contaminated by potentially toxic heavy metals. Over time, many of these metals accumulate in the sediment due to physico-chemical processes which remove them from the water column. Marine sediments are regularly subjected to physical process...

Radioactive equilibrium in ancient marine sediments

USGS Publications Warehouse

Breger, I.A.

1955-01-01

Radioactive equilibrium in eight marine sedimentary formations has been studied by means of direct determinations of uranium, radium and thorium. Alpha-particle counting has also been carried out in order to cross-calibrate thick-source counting techniques. The maximum deviation from radioactive equilibrium that has been noted is 11 per cent-indicating that there is probably equilibrium in all the formations analyzed. Thick-source alpha-particle counting by means of a proportional counter or an ionization chamber leads to high results when the samples contain less than about 10 p.p.m. of uranium. For samples having a higher content of uranium the results are in excellent agreement with each other and with those obtained by direct analytical techniques. The thorium contents that have been obtained correspond well to the average values reported in the literature. The uranium content of marine sediments may be appreciably higher than the average values that have been reported for sedimentary rocks. Data show that there is up to fourteen times the percentage of uranium as of thorium in the formations studied and that the percentage of thorium never exceeds that of uranium. While the proximity of a depositional environment to a land mass may influence the concentration of uranium in a marine sediment, this is not true with thorium. ?? 1955.

Estimating growth rates of uncultivated clades of archaea and bacteria in marine sediments

NASA Astrophysics Data System (ADS)

Lloyd, K. G.

2016-12-01

The vast majority of microbes present in marine sediments have never been cultivated in laboratory conditions. It is therefore difficult to estimate the growth rates of these organisms in situ. Quantitative PCR (qPCR) and 16S rRNA gene libraries from sediments below 10 cm show very little change in abundance of these organisms with depth or with redox conditions. Therefore, we hypothesized that uncultivated clades of bacteria and archaea that are ubiquitous in marine sediments, actually grow in the upper 10 cm of marine sediments. We collected sediment cores from the White Oak River estuary, sectioned them in 1 cm intervals, and examined the changes in abundance of uncultivated microbes with depth using 16S rRNA gene libraries and qPCR. We found that some of the key clades associated with the deep subsurface microbiome, such as Bathyarchaeota and MBG-D, increase in abundance with depth, demonstrating extremely slow growth in these shallow subsurface sediments.

Long-distance electron transport occurs globally in marine sediments

NASA Astrophysics Data System (ADS)

Burdorf, Laurine D. W.; Tramper, Anton; Seitaj, Dorina; Meire, Lorenz; Hidalgo-Martinez, Silvia; Zetsche, Eva-Maria; Boschker, Henricus T. S.; Meysman, Filip J. R.

2017-02-01

Recently, long filamentous bacteria have been reported conducting electrons over centimetre distances in marine sediments. These so-called cable bacteria perform an electrogenic form of sulfur oxidation, whereby long-distance electron transport links sulfide oxidation in deeper sediment horizons to oxygen reduction in the upper millimetres of the sediment. Electrogenic sulfur oxidation exerts a strong impact on the local sediment biogeochemistry, but it is currently unknown how prevalent the process is within the seafloor. Here we provide a state-of-the-art assessment of its global distribution by combining new field observations with previous reports from the literature. This synthesis demonstrates that electrogenic sulfur oxidation, and hence microbial long-distance electron transport, is a widespread phenomenon in the present-day seafloor. The process is found in coastal sediments within different climate zones (off the Netherlands, Greenland, the USA, Australia) and thrives on a range of different coastal habitats (estuaries, salt marshes, mangroves, coastal hypoxic basins, intertidal flats). The combination of a widespread occurrence and a strong local geochemical imprint suggests that electrogenic sulfur oxidation could be an important, and hitherto overlooked, component of the marine cycle of carbon, sulfur and other elements.

Phosphorus sorption on marine carbonate sediment: phosphonate as model organic compounds.

PubMed

Huang, Xiao-Lan; Zhang, Jia-Zhong

2011-11-01

Organophosphonate, characterized by the presence of a stable, covalent, carbon to phosphorus (C-P) bond, is a group of synthetic or biogenic organophosphorus compounds. The fate of these organic phosphorus compounds in the environment is not well studied. This study presents the first investigation on the sorption of phosphorus (P) in the presence of two model phosphonate compounds, 2-aminothylphosphonoic acid (2-AEP) and phosphonoformic acid (PFA), on marine carbonate sediments. In contrast to other organic P compounds, no significant inorganic phosphate exchange was observed in seawater. P was found to adsorb on the sediment only in the presence of PFA, not 2-AEP. This indicated that sorption of P from phosphonate on marine sediment was compound specific. Compared with inorganic phosphate sorption on the same sediments, P sorption from organic phosphorus is much less in the marine environment. Further study is needed to understand the potential role of the organophosphonate compounds in biogeochemical cycle of phosphorus in the environment. Copyright © 2011 Elsevier Ltd. All rights reserved.

Mycodiversity in marine sediments contaminated by heavy metals: preliminary results

NASA Astrophysics Data System (ADS)

Zotti, Mirca; Carbone, Cristina; Cecchi, Grazia; Consani, Sirio; Cutroneo, Laura; Di Piazza, Simone; Gabutto, Giacomo; Greco, Giuseppe; Vagge, Greta; Capello, Marco

2016-04-01

Fungi represent the main decomposers of woody and herbaceous substrates in the marine ecosystems. To date there is a gap in the knowledge about the global diversity and distribution of fungi in marine habitats. On the basis of their biological diversity and their role in ecosystem processes, marine fungi may be considered one of the most attractive groups of organisms in modern biotechnology, e.g. ecotoxic metal bioaccumulation. Here we report the data about the first mycological survey in the metal contaminated coastal sediments of the Gromolo Bay. The latter is located in Ligurian Sea (Eastern Liguria, Italy) and is characterized by an enrichment of heavy metals due to pollution of Gromolo Torrent by acidic processes that interest Fe-Cu sulphide mine. 24 samples of marine sediments were collected along a linear plot in front of the shoreline in July 2015. Each sample was separated into three aliquot for mineralogical, chemical analyses and fungal characterization. The sediment samples are characterised by clay fractions (illite and chlorite), minerals of ophiolitic rocks (mainly serpentine, pyroxene and plagioclase) and quartz and are enriched some chemical elements of environmental importance (such as Cu, Zn, Pb, Cd, As). For fungal characterisation the sediment samples were inoculated in Petri dishes on different culture media (Malt Extract Agar and Rose Bengal) prepared with sea water and added with antibiotics. The inoculated dishes were incubated at 20°C in the dark for 28 days. Every week fungal growth was monitored counting the number of colonies. Later, the colonies were isolated in axenic culture for further molecular analysis. The mycodiversity evaluate on the basis of Colony Forming Units (CFU) and microfungal-morphotype characterised by macro-and micro-morphology. Until now on the 72 Petri dishes inoculated 112 CFU of filamentous fungi were counted, among these about 50 morphotypes were characterized. The quantitative results show a mean value of 4

Carotenoid diagenesis in a marine sediment

NASA Technical Reports Server (NTRS)

Watts, C. D.; Maxwell, J. R.

1977-01-01

The major carotenoids at three levels (3, 40, and 175 m below the sediment-water interface) in a core from a marine sediment (Cariaco Trench, off Venezuela) have been examined. Mass and electronic spectral data have provided evidence for the onset of a progressive reduction of carotenoids in the geological column. The time scale of the process appears to depend on the particular carotenoid. Reduction of up to two double bonds is observed for the diol, zeaxanthin, in the oldest sediment (about 340,000 years old) but no reduction is observed in the younger samples (about 5000 and 56,000 years old). The diketone, canthaxanthin, shows evidence of reduction of up to two double bonds in the 56,000-yr sample and up to five double bonds in the oldest sample. No reduction of beta-carotene was observed in any of the samples.

Banking of environmental samples for short-term biochemical and chemical monitoring of organic contamination in coastal marine environments: the GICBEM experience (1986-1990). Groupe Interface Chimie Biologie des Ecosystèmes, Marins.

PubMed

Garrigues, P; Narbonne, J F; Lafaurie, M; Ribera, D; Lemaire, P; Raoux, C; Michel, X; Salaun, J P; Monod, J L; Romeo, M

1993-11-01

The GICBEM (Groupe Interface Chimie Biologie des Ecosystèmes Marins) program consists of an evaluation of the ecosystem health status in the Mediterranean Sea mainly based on chemical and biochemical approaches. Specific chemical contaminants (polycyclic aromatic hydrocarbons (PAH), polychlorobiphenyls (PCB), heavy metals) in waters, sediments, and related biotransformation indicators in target organisms (mussels, fish) have been selected for a complete survey of the coastal waters. In order to provide an appropriate sampling program for standardization for each sampling cruise, various aspects have been studied: (a) parameters for the choice of the sample sites; (b) ways of collection the samples (waters, sediments, marine organisms); and (c) preparation of the samples for a short term storage on board ship and for further analyses in the ground laboratory. Methods of preparation and storage of the samples are described and could be used to initiate an environmental banking program including both possible retrospective analyses of chemical pollutants and biochemical indicators. Moreover, the correlation between chemicals (PAH) and biochemical (mixed function oxygenase activities) parameters has been studied and this demonstrates the capability of the enzyme activities as reliable pollution biomarkers.

Marine dredged sediments as new materials resource for road construction.

PubMed

Siham, Kamali; Fabrice, Bernard; Edine, Abriak Nor; Patrick, Degrugilliers

2008-01-01

Large volumes of sediments are dredged each year in Europe in order to maintain harbour activities. With the new European Union directives, harbour managers are encouraged to find environmentally sound solutions for these materials. This paper investigates the potential uses of Dunkirk marine dredged sediment as a new material resource for road building. The mineralogical composition of sediments is evaluated using X-ray diffraction and microscopy analysis. Since sediments contain a high amount of water, a dewatering treatment has been used. Different suitable mixtures, checking specific geotechnical criteria as required in French standards, are identified. The mixtures are then optimized for an economical reuse. The mechanical tests conducted on these mixtures are compaction, bearing capacity, compression and tensile tests. The experimental results show the feasibility of the beneficial use of Dunkirk marine dredged sand and sediments as a new material for the construction of foundation and base layers for roads. Further research is now needed to prove the resistance of this new material to various environmental impacts (e.g., frost damage).

Simulated oil release from oil-contaminated marine sediment in the Bohai Sea, China.

PubMed

Yuan, Lingling; Han, Longxi; Bo, Wenjie; Chen, Hua; Gao, Wenshen; Chen, Bo

2017-05-15

There is a high degree of heavy oil partitioning into marine sediments when an oil spill occurs. Contaminated sediment, as an endogenous pollution source, can re-pollute overlying water slowly. In this study, a static oil release process and its effects in marine sediment was investigated through a series of experiments with reproductive heavy oil-contaminated marine sediment. The oil release process was accurately simulated with a Lagergren first-order equation and reached equilibration after 48h. The fitted curve for equilibrium concentration (C 0 ) and first-order rate constant (k 1 ) for sediment pollution levels exhibited a first-order log relationship. The instantaneous release rate (dC t dt) was also calculated. The C 0 increased with increases in temperature and dissolved organic matter (DOM), and decreasing salinity. The k 1 increased with temperature, but was not affected by DOM and salinity. These results can be used to better understand the fate of heavy oil in contaminated sediments of the Bohai Sea. Copyright © 2017. Published by Elsevier Ltd.

The nature and function of microbial enzymes in subsurface marine sediments

NASA Astrophysics Data System (ADS)

Steen, A. D.; Schmidt, J.

2016-02-01

Isotopic and genomic evidence indicates that marine sediments contain populations of active heterotrophic microorganisms which appear to metabolize old, detrital, apparently recalcitrant organic matter. In surface communities, heterotrophs use extracellular enzymes to access complex organic matter. In subsurface sediments, in which microbial doubling times can be on the order of hundreds or thousands of years, it is not clear whether extracellular enzymes could remain stable and active long enough to constitute a 'profitable' stragtegy for accessing complex organic carbon. Here we present evidence that a wide range of extracellular enzyme are active in subsurface sediments from two different environments: the White Oak River, NC, and deep (up to 80 m) sediments of the Baltic Sea Basin recovered from IODP Expedition 347. In the White Oak River, enzymes from deeper sediments appear to be better-adapted to highly-degraded organic matter than enzymes from surface sediments. In the Baltic Sea, preliminary data suggest that enzymes related to nitrogen acquisition are preferentially expressed. By characterizing the extracellular enzymes present in marine sediments, we hope to achieve a better understanding of the mechanisms that control sedimentary organic matter remineralization and preservation.

Novel carotenol chlorin esters in marine sediments and water column particulate matter

NASA Astrophysics Data System (ADS)

Goericke, Ralf; Shankle, Amy; Repeta, Daniel J.

1999-09-01

Novel esters of carotenols and chlorins (carotenol chlorin esters, CCEs) were found in recent sediments from the California Borderlands, Monterey Bay, and the Peru and Oman margins. The chlorins associated with CCEs were pheophorbide a and pyropheophorbide a, degradation products of chlorophyll a. Isofucoxanthin-dehydrate and isofucoxanthinol-dehydrate and possibly their isomers, degradation products of fucoxanthin, were the only carotenols associated with CCEs. This result is surprising, considering that at least 8 major degradation products of fucoxanthin are present in organic-rich marine sediments. The carotenols of CCEs are likely derived from diatoms as these are the primary source for fucoxanthin in the marine environment. In sediments studied by us, CCEs contributed approximately 10% to total solvent extractable chlorins. The high relative concentrations of CCEs in these sediments suggest that CCEs are an important degradation product of chlorophyll a in some marine environments; a pathway hitherto unrecognized. Off Oman and Southern California we found CCEs in water column suspended particulate matter when diatoms dominated the phytoplankton community. By analogy with sterol chlorin esters, we suggest that CCEs are primarily produced by enzymatically mediated transesterifications in crustaceans grazing on diatoms. We are currently studying if CCEs are biomarkers for the grazing of crustaceans on diatoms, an important pathway of carbon remineralization in the marine environment.

Necromass as a source of energy to microorganisms in marine sediments.

NASA Astrophysics Data System (ADS)

Bradley, J.; Amend, J.; LaRowe, D.

2017-12-01

Marine sediments constitute one of the largest, most energy-limited biospheres on Earth. Despite increasing exploration and interest characterizing microbial communities in marine sediments, the production and role of microbial dead-matter (necromass) has largely been overlooked. Necromass is produced on a global scale, yet its significance as a power source to heterotrophic microorganisms remains unknown. We developed a physical, bio-energetic and geochemical model to quantify the total power supply from necromass oxidation and the total power demand of living microorganisms in marine sediments. This model is first applied to sediments from the oligotrophic South Pacific Gyre (SPG), where organic carbon and biomass concentrations are extremely low, yet microorganisms persist for millions of years in some of the lowest energy states on Earth. We show that necromass does not supply sufficient power to support the total demands of the living community (<39%) at SPG. Application of our model on a global scale, however, shows that necromass produced and subsequently oxidized can provide sufficient power to satisfy the maintenance demands of microorganisms in marine sediments for up to 60,000 years following burial. Our model assumes that all counted cells are viable. Yet, if only a fraction of counted cells are alive, the role of necromass as an electron donor in fueling microbial metabolisms is even greater. This new insight requires a reassessment of carbon fluxes in the deep biosphere. By extension, we also demonstrate a mechanism for microbial communities to persist by oxidizing necromass over geological timescales, and thereby endure unfavorable, low-energy settings that might be analogous to conditions on early Earth and on other planetary bodies.

Environmental process descriptors for TNT, TNT-related compounds and picric acid in marine sediment slurries.

PubMed

Yost, Sally L; Pennington, Judith C; Brannon, James M; Hayes, Charolett A

2007-08-01

Process descriptors were determined for picric acid, TNT, and the TNT-related compounds 2,4DNT, 2,6DNT, 2ADNT, 4ADNT, 2,4DANT, 2,6DANT, TNB and DNB in marine sediment slurries. Three marine sediments of various physical characteristics (particle size ranging from 15 to >90% fines and total organic carbon ranging from <0.10 to 3.60%) were kept in suspension with 20ppt saline water. Concentrations of TNT and its related compounds decreased immediately upon contact with the marine sediment slurries, with aqueous concentrations slowly declining throughout the remaining test period. Sediment-water partition coefficients could not be determined for these compounds since solution phase concentrations were unstable. Kinetic rates and half-lives were influenced by the sediment properties, with the finer grained, higher organic carbon sediment being the most reactive. Aqueous concentrations of picric acid were very stable, demonstrating little partitioning to the sediments. Degradation to picramic acid was minimal, exhibiting concentrations at or just above the detection limit.

Paired measurements of K and Mg isotopes and clay authigenesis in marine sediments

NASA Astrophysics Data System (ADS)

Santiago Ramos, D. P.; Dunlea, A. G.; Higgins, J. A.

2016-12-01

Despite its importance as a major sink for seawater K and Mg, estimates of clay authigenesis in marine sediments remain poorly constrained. Previous work on Mg isotope fractionation during clay formation has revealed a preferential uptake of 26Mg, yielding authigenic clay products with potentially distinct δ26Mg compared to the detrital component. In a similar manner, we aim to quantify the K isotope fractionation during authigenic clay formation and to use paired δ26Mg and δ41K measurements as proxies for the identification and quantification of authigenic clays in shallow and deep marine sedimentary systems. To better understand the behavior of paired Mg and K isotopes during authigenic clay formation in marine sediments, we measured δ26Mg and δ41K values of pore-fluids and sediments from ODP/IODP sites 1052, U1395, U1403 and U1366. We find that while pore-fluid K concentrations at sites 1052, U1395 and U1403 all decline with depth, δ41K profiles differ significantly. These differences might be a result of a complex interplay between clay authigenesis, sedimentation rate, and fractionation of K isotopes during diffusion. Results from 1-D diffusion-advection-reaction models suggest that, in contrast to Mg, diffusion may play an important role in determining the overall K isotope fractionation during clay authigenesis in sites with low-sedimentation rates. Sites with high sedimentation rates may act as close systems where diffusion is negligible. In such cases, K uptake can be modeled as a Rayleigh distillation process and K isotope fractionation can be estimated. Measurements of δ26Mg and δ41K of pore-fluids from site U1395 and bulk sediments from U1366 suggest that paired measurements of these isotopic systems in siliciclastic marine sediments can provide new insights into rates of marine clay authigenesis, a globally important but understudied component of many geochemical cycles.

Cohesive Strength of Gas-hydrate-bearing Marine Sediments

NASA Astrophysics Data System (ADS)

Cook, A. E.; Goldberg, D.

2005-12-01

We examine the relationship between gas hydrate saturation and the cohesive strength of marine sediments in a variety of continental margin settings. The cohesive strength (cohesion) is a fundamental physical property controlling sediment resistance to compressive failure. The cohesion (Co), is typically defined by the uncompressive rock strength and the friction angle, but it can also be related to the dynamic Young's modulus (ED), where: Co = 1.5*10-3 ED. The dynamic Young's modulus is computed using in situ Vp, Vs, and bulk density borehole logs. The Co profiles are compared to estimates of the in situ hydrate saturation, Sh, calculated using electrical resistivity logs and the modified Archie formula: Sh = 1 - (aRw/RΦm)1/n. We will present results of these comparisons from data collected during Ocean Drilling Program Legs at Cascadia margin (204 & 168) and Blake Ridge (164), the JIP gas hydrate drilling project in the Gulf of Mexico, and Malik permafrost wells. In general, at all the sites investigated, Co steadily increases downhole as sediments compact due to overburden. In marine sediments, cohesion ranges from 500-2000kPa above the BSR, with a baseline gradient usually between 5 and 10 kPa/m. Preliminary results show at Cascadia margin that sediments with Sh > 15%, Co increases dramatically, at least 200kPa greater than the general trend of the downhole gradient. This suggests that Co is affected directly by Sh, and may be related to the rate of change in Sh (e.g. gradual or sharp) as a function of depth. Further study on the relationship between Co and Sh may provide information on the growth habit of gas hydrates in sediment pore spaces.

The onset of fabric development in deep marine sediments

NASA Astrophysics Data System (ADS)

Maffione, Marco; Morris, Antony

2017-09-01

Post-depositional compaction is a key stage in the formation of sedimentary rocks that results in porosity reduction, grain realignment and the production of sedimentary fabrics. The progressive time-depth evolution of the onset of fabric development in deep marine sediments is poorly constrained due to the limited quantity and resolution of existing data. Here we present high-resolution anisotropy of magnetic susceptibility (AMS) results from clay-rich deep marine sediments recovered at International Ocean Discovery Program Site U1438 (Philippine Sea). AMS is a petrofabric tool sensitive to the preferred orientation of grains in rocks. Down-section variations of AMS parameters, density, porosity and the inclination of magnetic remanences demonstrate that fabrics develop in response to compaction and dewatering but also that they do not develop progressively with depth below the mudline. Instead, a horizontal foliation first forms at 83 mbsf once the sediment load reaches an effective stress threshold for the onset of compaction and is then continuously enhanced down to 113 mbsf, defining a 30 m-thick 'initial compaction window'. The magnetostratigraphic age model for IODP Site U1438 indicates a delay of 5.7 Ma in initial fabric formation following sediment deposition, with strongly defined fabrics then taking an additional 6.5 Ma to develop.

Energy Gradients Structure Microbial Communities Across Sediment Horizons in Deep Marine Sediments of the South China Sea

PubMed Central

Graw, Michael F.; D'Angelo, Grace; Borchers, Matthew; Thurber, Andrew R.; Johnson, Joel E.; Zhang, Chuanlun; Liu, Haodong; Colwell, Frederick S.

2018-01-01

The deep marine subsurface is a heterogeneous environment in which the assembly of microbial communities is thought to be controlled by a combination of organic matter deposition, electron acceptor availability, and sedimentology. However, the relative importance of these factors in structuring microbial communities in marine sediments remains unclear. The South China Sea (SCS) experiences significant variability in sedimentation across the basin and features discrete changes in sedimentology as a result of episodic deposition of turbidites and volcanic ashes within lithogenic clays and siliceous or calcareous ooze deposits throughout the basin's history. Deep subsurface microbial communities were recently sampled by the International Ocean Discovery Program (IODP) at three locations in the SCS with sedimentation rates of 5, 12, and 20 cm per thousand years. Here, we used Illumina sequencing of the 16S ribosomal RNA gene to characterize deep subsurface microbial communities from distinct sediment types at these sites. Communities across all sites were dominated by several poorly characterized taxa implicated in organic matter degradation, including Atribacteria, Dehalococcoidia, and Aerophobetes. Sulfate-reducing bacteria comprised only 4% of the community across sulfate-bearing sediments from multiple cores and did not change in abundance in sediments from the methanogenic zone at the site with the lowest sedimentation rate. Microbial communities were significantly structured by sediment age and the availability of sulfate as an electron acceptor in pore waters. However, microbial communities demonstrated no partitioning based on the sediment type they inhabited. These results indicate that microbial communities in the SCS are structured by the availability of electron donors and acceptors rather than sedimentological characteristics. PMID:29696012

Solidification/stabilization of dredged marine sediments for road construction.

PubMed

Wang, Dong Xing; Abriak, Nor Edine; Zentar, Rachid; Xu, WeiYa

2012-01-01

Cement/lime-based solidification is an environmentally sound solution for the management of dredged marine sediments, instead of traditional solutions such as immersion. Based on the mineralogical composition and physical characteristics of Dunkirk sediments, the effects of cement and lime are assessed through Atterberg limits, modified Proctor compaction, unconfined compressive strength and indirect tensile strength tests. The variation of Atterberg limits and the improvement in strength are discussed at different binder contents. The potential of sediments solidified with cement or lime for road construction is evaluated through a proposed methodology from two aspects: I-CBR value and material classification. The test results show the feasibility of solidified dredged sediments for beneficial use as a material in road construction. Cement is superior to lime in terms of strength improvement, and adding 6% cement is an economic and reasonable method to stabilize fine sediments.

Spheroidal Carbonaceous Particles (SCPs) as Chronological Markers in Marine Sediments

NASA Astrophysics Data System (ADS)

Thornalley, D.; Rose, N.; Oppo, D.

2016-12-01

Spheroidal carbonaceous particles (SCPs) are a component of fly-ash, the particulate by-product of industrial high-temperature combustion of coal and fuel-oil that is released to the atmosphere with flue-gases. They are morphologically distinct and have no natural sources making them unambiguous markers of contamination from these anthropogenic sources. In naturally accumulating archives, SCPs may be used as a chronological tool as they provide a faithful record of industrial emissions and deposition. While the timing of the first presence of SCP in the 19th century, and the observed sub-surface peak are dependent on factors such as sediment accumulation rates and local industrial history, a rapid increase in SCP inputs in the mid-20thcentury appears to be a global signal corresponding to an acceleration in global electricity demand following the Second World War and the use of fuel-oil in electricity production at an industrial scale for the first time. While this approach has been widely used in lake sediments, it has not been applied to marine sediments, although there is great potential. Improved dating of 19th-20th century marine sediments has particular relevance for developing reconstructions of recent multi-decadal climate and ocean variability, and for studies that aim to place 20thcentury climate change within the context of the last millennium. Here, we present data from three sediment cores from the continental slope south of Iceland to demonstrate the temporal and spatial replicability of the SCP record in the marine environment and compare these data with cores taken from more contaminated areas off the coast of the eastern United States. The improved age model constraints provided by the analysis of SCPs has enabled a more accurate assessment of the timing of recent abrupt climate events recorded in these archives and has thus improved our understanding of likely causal climate mechanisms.

The Role of Authigenic Volcanic Ash in Marine Sediment

NASA Astrophysics Data System (ADS)

Scudder, R.; McKinley, C. C.; Thomas, D. J.; Murray, R. W.

2016-12-01

Marine sediments are a fundamental archive of the history of weathering and erosion, biological productivity, volcanic activity, patterns of deep-water formation and circulation, and a multitude of other earth, ocean, and atmosphere processes. In particular, the record and consequences of volcanic eruptions have long fascinated humanity. Volcanic ash layers are often visually stunning, and can have thicknesses of 10s of cm or more. While the ash layer records are of great importance by themselves, we are missing a key piece of information-that of the very fined grained size fractions. Dispersed ash is the very fine grained-component that has either been mixed into the bulk sediment by bioturbation, or is deposited from subaqueous eruptions, erosion of terrestrial deposits, general input during time periods of elevated global volcanism, or other mechanisms, plays an important role in the marine sediment. The presence of dispersed ash in the marine record has previously been relatively over-looked as it is difficult to identify petrographically due to its commonly extremely fine grain size and/or alteration to authigenic clay. The dispersed ash, either altered or unaltered, is extremely difficult to differentiate from detrital/terrigenous/authigenic clay, as they are all "aluminosilicates". Here we apply a combined geochemical, isotopic, and statistical technique that enables us to resolve volcanic from detrital terrigenous inputs at DSDP/ODP/IODP sites from both the Brazil Margin and the Northwest Pacific Oceans. Incorporating the combined geochemical/statistical techniques with radiogenic isotope records allows us to address paleoceanographic questions in addition to studies of the effect of sediment fluxes on carbon cycling, the relationship between volcanic ash and biological productivity of the open ocean and nutrient availability for subseafloor microbial life.

Causes and ecological effects of resuspended contaminated sediments (RCS) in marine environments.

PubMed

Roberts, David A

2012-04-01

Sediments act as a net sink for anthropogenic contaminants in marine ecosystems and contaminated sediments may have a range of toxicological effects on benthic fauna and associated species. When resuspended, however, particulate-bound contaminants may be remobilised into the water column and become bioavailable to an additional assemblage of species. Such resuspension occurs through a range of natural and anthropogenic processes each of which may be thought of as pulsed disturbances resulting in pulsed exposures to contaminants. Thus, it is important to understand not only the toxicological responses of organisms to resuspended contaminated sediments (RCS), but also the frequency, magnitude and duration of sediment disturbance events. Such information is rarely collected together with toxicological data. Rather, the majority of published studies (>50% of the articles captured in this review) have taken the form of fixed-duration laboratory-based exposures with individual species. While this research has clearly demonstrated that resuspension of contaminated sediments can liberate sediment-bound contaminants leading to toxicity and bioaccumulation under controlled conditions, the potential for ecological effects in the field is often unclear. Monitoring studies suggest that recurrent natural disturbances such as tides and waves may cause the majority of contaminant release in many environments. However, various processes also act to limit the spatial and temporal scales across which contaminants are remobilised to the most toxic dissolved state. Various natural and anthropogenic disturbances of contaminated sediments have been linked to both community-level and sub-lethal responses in exposed populations of invertebrates and fish in the field. Together these findings suggest that resuspension of contaminated sediments is a frequently recurring ecological threat in contaminated marine habitats. Further consideration of how marine communities respond to temporally

Marinicella sediminis sp. nov., isolated from marine sediment

USDA-ARS?s Scientific Manuscript database

A novel heterotrophic, Gram-stain-negative, aerobic, rod-shaped, pale yellow, non-motile and non-spore-forming bacterium, designated as strain F2**T, was isolated from the marine sediment collected from Weihai coastal, Shandong Province, PR China. Optimal growth occurred at 33 °C (range 10–37 °C), w...

PHOTOACTIVATION AND TOXICITY OF MIXTURES OF POLYCYCLIC AROMATIC HYDROCARBON COMPOUNDS IN MARINE SEDIMENT

EPA Science Inventory

The direct toxicity and photoinduced toxicity of sediment-associated acenaphthene, phenanthrene, fluoranthene, and pyrene were determined for the marine amphipod Rhepoxynius abronius. The four polycyclic aromatic hydrocarbons (PAHs) were spiked into sediment in a concentration se...

Dynamic modeling of environmental risk associated with drilling discharges to marine sediments.

PubMed

Durgut, İsmail; Rye, Henrik; Reed, Mark; Smit, Mathijs G D; Ditlevsen, May Kristin

2015-10-15

Drilling discharges are complex mixtures of base-fluids, chemicals and particulates, and may, after discharge to the marine environment, result in adverse effects on benthic communities. A numerical model was developed to estimate the fate of drilling discharges in the marine environment, and associated environmental risks. Environmental risk from deposited drilling waste in marine sediments is generally caused by four types of stressors: oxygen depletion, toxicity, burial and change of grain size. In order to properly model these stressors, natural burial, biodegradation and bioturbation processes were also included. Diagenetic equations provide the basis for quantifying environmental risk. These equations are solved numerically by an implicit-central differencing scheme. The sediment model described here is, together with a fate and risk model focusing on the water column, implemented in the DREAM and OSCAR models, both available within the Marine Environmental Modeling Workbench (MEMW) at SINTEF in Trondheim, Norway. Copyright © 2015 Elsevier Ltd. All rights reserved.

Sulfate reduction and oxic respiration in marine sediments: implications for organic carbon preservation in euxinic environments

NASA Technical Reports Server (NTRS)

Canfield, D. E.; DeVincenzi, D. L. (Principal Investigator)

1989-01-01

Compilations have been made of sulfate reduction rates and oxic respiration rates over the entire range of marine sedimentation rates, and sedimentary environments, including several euxinic sites. These data show, consistent with the findings of Jorgensen (1982, Nature, 296, 643-645), that sulfate reduction and oxic respiration oxidize equal amounts of organic carbon in nearshore sediments. As sedimentation rates decrease, oxic respiration, becomes progressively more important, and in deep-sea sediments 100-1000 times more organic carbon is oxidized by oxic respiration than by sulfate reduction. By contrast, nearly as much organic carbon is oxidized by sulfate reduction in euxinic sediments as is oxidized by the sum of sulfate reduction and oxic respiration in normal marine sediments of similar deposition rate. This observation appears at odds with the enhanced preservation of organic carbon observed in euxinic sediments. However, only small reductions in (depth-integrated) organic carbon decomposition rates (compared to normal marine) are required to give both high organic carbon concentrations and enhanced carbon preservation in euxinic sediments. Lower rates of organic carbon decomposition (if only by subtle amounts) are explained by the diminished ability of anaerobic bacteria to oxidize the full suite of sedimentary organic compounds.

Detection of recycled marine sediment components in crater lake fluids using 129I

NASA Astrophysics Data System (ADS)

Fehn, U.; Snyder, G. T.; Varekamp, J. C.

2002-06-01

Crater lakes provide time-integrated samples of volcanic fluids, which may carry information on source components. We tested under what circumstances 129I concentrations can be used for the detection of a signal derived from the recycling of marine sediments in subduction zone magmatism. The 129I system has been successfully used to determine origin and pathways in other volcanic fluids, but the application of this system to crater lakes is complicated by the presence of anthropogenic 129I, related to recent nuclear activities. Results are reported from four crater lakes, associated with subducting crust varying in age between 23 and 98 Ma. The 129I/I ratios determined for Copahue, Argentina, (129I/I=700×10-15) and White Island, New Zealand, (129I/I=284×10-15) demonstrate the presence of iodine in the crater lakes that was derived from recycled marine sediments. A comparison to the ages of the subducted sediments in these two cases indicates that the ratios likely reflect iodine remobilization from the entire sediment column that was undergoing subduction. While the 129I signals in Poás and Rincón de la Vieja, Costa Rica also demonstrate the presence of recycled iodine, the relatively high percentage of meteoric water in these lakes prevents a reliable determination of source ages. The observed high concentrations of iodine and 129I/I ratios substantially below current surface values strongly argue for the presence of recycled marine components in the arc magmas of all four cases. Components from subducted marine sediments can be quantified and related to specific parts of the sediment column in cases where the iodine concentration in the lake waters exceeds 5 μM.

A statistical approach to the interpretation of aliphatic hydrocarbon distributions in marine sediments

USGS Publications Warehouse

Rapp, J.B.

1991-01-01

Q-mode factor analysis was used to quantitate the distribution of the major aliphatic hydrocarbon (n-alkanes, pristane, phytane) systems in sediments from a variety of marine environments. The compositions of the pure end members of the systems were obtained from factor scores and the distribution of the systems within each sample was obtained from factor loadings. All the data, from the diverse environments sampled (estuarine (San Francisco Bay), fresh-water (San Francisco Peninsula), polar-marine (Antarctica) and geothermal-marine (Gorda Ridge) sediments), were reduced to three major systems: a terrestrial system (mostly high molecular weight aliphatics with odd-numbered-carbon predominance), a mature system (mostly low molecular weight aliphatics without predominance) and a system containing mostly high molecular weight aliphatics with even-numbered-carbon predominance. With this statistical approach, it is possible to assign the percentage contribution from various sources to the observed distribution of aliphatic hydrocarbons in each sediment sample. ?? 1991.

Seasonal Rates of Methane Oxidation in Anoxic Marine Sediments

PubMed Central

Iversen, Niels; Blackburn, T. Henry

1981-01-01

Methane concentrations and rates of methane oxidation were measured in intact sediment cores from an inshore marine sediment at Jutland, Denmark. The rates of methane oxidation, determined by the appearance of 14CO2 from injected 14CH4, varied with sediment depth and season. Most methane oxidation was anoxic, but oxygen may have contributed to methane oxidation at the sediment surface. Cumulative rates (0- to 12-cm depth) for methane oxidation at Kysing Fjord were 3.34, 3.48, 8.60, and 17.04 μmol m−2 day−1 for April (4°C), May (13°C), July (17°C), and August (21°C), respectively. If all of the methane was oxidized by sulfate, it would account for only 0.01 to 0.06% of the sulfate reduction. The data indicate that methane was produced, in addition to being oxidized, in the 0- to 18-cm sediment stratum. PMID:16345784

Degradation of Herbicides in the Tropical Marine Environment: Influence of Light and Sediment.

PubMed

Mercurio, Philip; Mueller, Jochen F; Eaglesham, Geoff; O'Brien, Jake; Flores, Florita; Negri, Andrew P

2016-01-01

Widespread contamination of nearshore marine systems, including the Great Barrier Reef (GBR) lagoon, with agricultural herbicides has long been recognised. The fate of these contaminants in the marine environment is poorly understood but the detection of photosystem II (PSII) herbicides in the GBR year-round suggests very slow degradation rates. Here, we evaluated the persistence of a range of commonly detected herbicides in marine water under field-relevant concentrations and conditions. Twelve-month degradation experiments were conducted in large open tanks, under different light scenarios and in the presence and absence of natural sediments. All PSII herbicides were persistent under control conditions (dark, no sediments) with half-lives of 300 d for atrazine, 499 d diuron, 1994 d hexazinone, 1766 d tebuthiuron, while the non-PSII herbicides were less persistent at 147 d for metolachlor and 59 d for 2,4-D. The degradation of herbicides was 2-10 fold more rapid in the presence of a diurnal light cycle and coastal sediments; apart from 2,4-D which degraded more slowly in the presence of light. Despite the more rapid degradation observed for most herbicides in the presence of light and sediments, the half-lives remained > 100 d for the PS II herbicides. The effects of light and sediments on herbicide persistence were likely due to their influence on microbial community composition and its ability to utilise the herbicides as a carbon source. These results help explain the year-round presence of PSII herbicides in marine systems, including the GBR, but more research on the transport, degradation and toxicity on a wider range of pesticides and their transformation products is needed to improve their regulation in sensitive environments.

The Atmospheric Supply of Terrestrial Authigenic Phosphate Minerals to Open Marine Sediments

NASA Astrophysics Data System (ADS)

Flaum, J. A.; Jacobson, A. D.; Sageman, B. B.

2007-12-01

Authigenic P-bearing minerals (Pauth), such as carbonate fluorapatite, form within shallow marine sediments as biological processes degrade organic matter and release associated phosphate to the dissolved pool during early diagenesis. Thus, Pauth is commonly used as a proxy for productivity in modern and ancient marine depositional environments. To help refine this proxy and further improve understanding of the marine P cycle, we investigated if dust deposition could supply terrestrially derived Pauth and other P-bearing phases to modern marine sediments. We used the SEDEX sequential extraction procedure to quantify the occurrence of P in ten samples of loess from the Chinese Loess Plateau, a major source of dust to the North Pacific Ocean (NPO). On average, 40% of the total P within Chinese Loess occurs as Pauth, 33% as detrital apatite (Pdet), 17% in organic matter (Porg), and 10% bound to Fe-Al oxides (Pox). Using eolian dust and total P accumulation rates reported for core LL44-GC3 taken from the central NPO, we find that ~86% of the total P accumulation within the central NPO could originate from the atmospheric deposition of Pauth and Pdet. Hence, productivity estimates based upon total P accumulation for this site are likely lower than previously estimated. Our findings suggest that marine productivity studies predicated on the measurement of Pauth need to quantify the fraction of Pauth supplied from terrestrial sources. This may be even more significant along continental margins where rivers can supply sediments with high concentrations of Pauth minerals.

High growth potential and nitrogen removal performance of marine anammox bacteria in shrimp-aquaculture sediment.

PubMed

Van Duc, Luong; Song, Bongkeun; Ito, Hiroaki; Hama, Takehide; Otani, Masashi; Kawagoshi, Yasunori

2018-04-01

Anaerobic ammonium oxidation (anammox) bacteria were enriched in continuous packed-bed columns with marine sediment. One column (SB-C) was packed with only marine sediment collected from a shrimp-aquaculture pond, and another column (SB-AMX) was inoculated with marine anammox bacteria (MAB) as a control. These columns were continuously fed with natural or artificial seawater including ammonium (NH 4 + ) and nitrite (NO 2 - ). The SB-AMX showed anammox activities from the beginning and continued for over 200 days. However, the SB-C had no nitrogen removal performance for over 170 days. After adding a bicarbonate solution (KHCO 3 ) to the sediment-only packed column, anammox activity was observed within 13 days. The column exhibited a nitrogen removal efficiency (NRE) of 88% at a nitrogen loading rate (NLR) of 1.0 kg-N·m -3 ·day -1 , which was comparable to the control one. A next-generation sequencing analysis revealed the predominance of MAB related to "Candidatus Scalindua spp.". In addition, the co-occurrence of sulfur-oxidizing denitrifiers was observed, which suggests their symbiotic relationship. This study suggests the applicability of MAB for in-situ bioremediation of nitrogen-contaminated marine sediments and reveals a potential microbial interaction between anammox and sulfur-oxidizing communities responsible for nitrogen and sulfur cycling in marine aquaculture systems. Copyright © 2017 Elsevier Ltd. All rights reserved.

Optimizing sample pretreatment for compound-specific stable carbon isotopic analysis of amino sugars in marine sediment

NASA Astrophysics Data System (ADS)

Zhu, R.; Lin, Y.-S.; Lipp, J. S.; Meador, T. B.; Hinrichs, K.-U.

2014-01-01

Amino sugars are quantitatively significant constituents of soil and marine sediment, but their sources and turnover in environmental samples remain poorly understood. The stable carbon isotopic composition of amino sugars can provide information on the lifestyles of their source organisms and can be monitored during incubations with labeled substrates to estimate the turnover rates of microbial populations. However, until now, such investigation has been carried out only with soil samples, partly because of the much lower abundance of amino sugars in marine environments. We therefore optimized a procedure for compound-specific isotopic analysis of amino sugars in marine sediment employing gas chromatography-isotope ratio mass spectrometry. The whole procedure consisted of hydrolysis, neutralization, enrichment, and derivatization of amino sugars. Except for the derivatization step, the protocol introduced negligible isotopic fractionation, and the minimum requirement of amino sugar for isotopic analysis was 20 ng, i.e. equivalent to ~ 8 ng of amino sugar carbon. Our results obtained from δ13C analysis of amino sugars in selected marine sediment samples showed that muramic acid had isotopic imprints from indigenous bacterial activities, whereas glucosamine and galactosamine were mainly derived from organic detritus. The analysis of stable carbon isotopic compositions of amino sugars opens a promising window for the investigation of microbial metabolisms in marine sediments and the deep marine biosphere.

Quantifying the degradation of organic matter in marine sediments: A review and synthesis

NASA Astrophysics Data System (ADS)

Arndt, Sandra; Jørgensen, B. B.; LaRowe, D. E.; Middelburg, J. J.; Pancost, R. D.; Regnier, P.

2013-08-01

Quantifying the rates of biogeochemical processes in marine sediments is essential for understanding global element cycles and climate change. Because organic matter degradation is the engine behind benthic dynamics, deciphering the impact that various forces have on this process is central to determining the evolution of the Earth system. Therefore, recent developments in the quantitative modeling of organic matter degradation in marine sediments are critically reviewed. The first part of the review synthesizes the main chemical, biological and physical factors that control organic matter degradation in sediments while the second part provides a general review of the mathematical formulations used to model these processes and the third part evaluates their application over different spatial and temporal scales. Key transport mechanisms in sedimentary environments are summarized and the mathematical formulation of the organic matter degradation rate law is described in detail. The roles of enzyme kinetics, bioenergetics, temperature and biomass growth in particular are highlighted. Alternative model approaches that quantify the degradation rate constant are also critically compared. In the third part of the review, the capability of different model approaches to extrapolate organic matter degradation rates over a broad range of temporal and spatial scales is assessed. In addition, the structure, functions and parameterization of more than 250 published models of organic matter degradation in marine sediments are analyzed. The large range of published model parameters illustrates the complex nature of organic matter dynamics, and, thus, the limited transferability of these parameters from one site to another. Compiled model parameters do not reveal a statistically significant correlation with single environmental characteristics such as water depth, deposition rate or organic matter flux. The lack of a generic framework that allows for model parameters to be

Ubiquitous Presence and Novel Diversity of Anaerobic Alkane Degraders in Cold Marine Sediments.

PubMed

Gittel, Antje; Donhauser, Johanna; Røy, Hans; Girguis, Peter R; Jørgensen, Bo B; Kjeldsen, Kasper U

2015-01-01

Alkanes are major constituents of crude oil and are released to the marine environment by natural seepage and from anthropogenic sources. Due to their chemical inertness, their removal from anoxic marine sediments is primarily controlled by the activity of anaerobic alkane-degrading microorganisms. To facilitate comprehensive cultivation-independent surveys of the diversity and distribution of anaerobic alkane degraders, we designed novel PCR primers that cover all known diversity of the 1-methylalkyl succinate synthase gene (masD/assA), which catalyzes the initial activation of alkanes. We studied masD/assA gene diversity in pristine and seepage-impacted Danish coastal sediments, as well as in sediments and alkane-degrading enrichment cultures from the Middle Valley (MV) hydrothermal vent system in the Pacific Northwest. MasD/assA genes were ubiquitously present, and the primers captured the diversity of both known and previously undiscovered masD/assA gene diversity. Seepage sediments were dominated by a single masD/assA gene cluster, which is presumably indicative of a substrate-adapted community, while pristine sediments harbored a diverse range of masD/assA phylotypes including those present in seepage sediments. This rare biosphere of anaerobic alkane degraders will likely increase in abundance in the event of seepage or accidental oil spillage. Nanomolar concentrations of short-chain alkanes (SCA) were detected in pristine and seepage sediments. Interestingly, anaerobic alkane degraders closely related to strain BuS5, the only SCA degrader in pure culture, were found in mesophilic MV enrichments, but not in cold sediments from Danish waters. We propose that the new masD/assA gene lineages in these sediments represent novel phylotypes that are either fueled by naturally occurring low levels of SCA or that metabolize medium- to long-chain alkanes. Our study highlights that masD/assA genes are a relevant diagnostic marker to identify seepage and microseepage, e

Investigation into spore coat properties for the rapid identification of endospores in marine sediments

NASA Astrophysics Data System (ADS)

Rattray, J. E.; Chakraborty, A.; Bernard, B. B.; Brooks, J.; Hubert, C. R.

2017-12-01

Understanding the sediment biogeography of dormant marine thermophilic bacterial endospores (thermospores) has the potential to assist locating and characterising working petroleum systems. The presence of thermospores in cold ocean environments suggests that distribution occurs via hydrocarbon seepage from thermally active reservoirs. Low abundance and endospore coat physiology mean nucleic acid based techniques have limited success for in situ detection of thermospores. Alternative rapid analytical methods are needed so we investigated using the Schaeffer-Fulton (malachite green and safranin) and DAPI (4',6-diamidino-2-phenylindole) staining techniques on thermospores from cultures and marine sediments. Sediment samples from 111 locations in the Eastern Gulf of Mexico (100 to 3300 m water depth; 6 to 600 km apart) were incubated at high temperature, followed by construction of 16S rRNA gene amplicon libraries (V3-V4 region; Illumina MiSeq) revealing enrichment of species-level thermospore OTUs. A sulfate reducing bacterium from site EGM080 was purified and classified based on its rRNA gene sequence as Desulfotomaculum geothermicum. Prior to thermospore staining the culture was kept in the death/ decline phase for 16 weeks to promote sporulation. Samples of D. geothermicum and the source marine sediment were fixed, stained then analysed using brightfield, phase contrast or fluorescence microscopy. Thermospores in pure culture were identified using phase contrast but were difficult to observe in the sediment sample due to particle aggregation. The Schaeffer-Fulton technique aided thermospore identification in a complex sediment sample matrix as thermospores were stained bright green, and also revealed that there were only spores and no (red stained) vegetative cells in the culture. Treatment with DAPI gave dull fluorescing cells but also provided insight into the behaviour of thermospores in sediment suspensions. Spores in the culture medium were free floating but

Sediment Burial Intolerance of Marine Macroinvertebrates.

PubMed

Hendrick, Vicki J; Hutchison, Zoë L; Last, Kim S

2016-01-01

The marine environment contains suspended particulate matter which originates from natural and anthropogenic sources. Settlement of this material can leave benthic organisms susceptible to smothering, especially if burial is sudden i.e. following storms or activities such as dredging. Their survival will depend on their tolerance to, and their ability to escape from burial. Here we present data from a multi-factorial experiment measuring burial responses incorporating duration, sediment fraction and depth. Six macroinvertebrates commonly found in sediment rich environments were selected for their commercial and/or conservation importance. Assessments revealed that the brittle star (Ophiura ophiura), the queen scallop (Aequipecten opercularis) and the sea squirt (Ciona intestinalis) were all highly intolerant to burial whilst the green urchin (Psammichinus miliaris) and the anemone (Sagartiogeton laceratus), showed intermediate and low intolerance respectively, to burial. The least intolerant, with very high survival was the Ross worm (Sabellaria spinulosa). With the exception of C. intestinalis, increasing duration and depth of burial with finer sediment fractions resulted in increased mortality for all species assessed. For C. intestinalis depth of burial and sediment fraction were found to be inconsequential since there was complete mortality of all specimens buried for more than one day. When burial emergence was assessed O. ophiura emerged most frequently, followed by P. miliaris. The former emerged most frequently from the medium and fine sediments whereas P. miliaris emerged more frequently from coarse sediment. Both A. opercularis and S. laceratus showed similar emergence responses over time, with A. opercularis emerging more frequently under coarse sediments. The frequency of emergence of S. laceratus increased with progressively finer sediment and C. intestinalis did not emerge from burial irrespective of sediment fraction or depth. Finally, and perhaps

Up-flow anaerobic sediment trapped (UAST) reactor as a new configuration for the enrichment of anammox bacteria from marine sediments.

PubMed

Rios-Del Toro, E Emilia; López-Lozano, Nguyen E; Cervantes, Francisco J

2017-08-01

A novel reactor configuration for the enrichment of anammox bacteria from marine sediments was developed. Marine sediments were successfully kept inside the bioreactors during the enrichment process by strategically installing traps at different depths to prevent the wash-out of sediments. Three up-flow anaerobic sediment trapped (UAST) reactors were set up (α, β and ω supplied with 50, 150 and 300mgCa 2+ /L, respectively). Nitrogen removal rates (NRR) of up to 3.5gN/L-d and removal efficiencies of >95% were reached. Calcium enhanced biomass production as evidenced by increased volatile suspended solids and extracellular polymeric substances. After the long-term operation, dominant families detected were Rhodobacteracea, Flavobacteracea, and Alteromonadacea, while the main anammox genera detected in the three reactors were Candidatus Kuenenia and Candidatus Anammoximicrobium. The UAST reactor is proposed as suitable technology for the enrichment of anammox bacteria applicable for the treatment of saline industrial wastewaters with high nitrogen content. Copyright © 2017 Elsevier Ltd. All rights reserved.

Hydrocarbons in recent sediment of the Monterey Bay National Marine Sanctuary

USGS Publications Warehouse

Kvenvolden, K.A.; Hostettler, F.D.; Rosenbauer, R.W.; Lorenson, T.D.; Castle, W.T.; Sugarman, S.

2002-01-01

A complex mixture of hydrocarbons is present in the recent sediment of the Monterey Bay National Marine Sanctuary. Eighteen samples from the continental shelf between San Francisco and Monterey contain aliphatic and aromatic hydrocarbons showing biological contributions from both marine and terrigenous sources, with the terrigenous indicators more pronounced near Monterey. Of particular interest, however, is a low-level background of petroleum-related compounds, including 28,30-bisnorhopane and 18??+??(H)-oleanane, which are characteristic of many crude oils from the Monterey Formation of California. Thus, the sediments are overprinted by a regional chemical signature which may be derived from eroded Monterey Formation rocks and from onshore and offshore seeps releasing petroleum from Monterey Formation source rocks. ?? 2002 Elsevier Science B.V. All rights reserved.

Archaea in Organic-Lean and Organic-Rich Marine Subsurface Sediments: An Environmental Gradient Reflected in Distinct Phylogenetic Lineages

PubMed Central

Durbin, Alan M.; Teske, Andreas

2012-01-01

Examining the patterns of archaeal diversity in little-explored organic-lean marine subsurface sediments presents an opportunity to study the association of phylogenetic affiliation and habitat preference in uncultured marine Archaea. Here we have compiled and re-analyzed published archaeal 16S rRNA clone library datasets across a spectrum of sediment trophic states characterized by a wide range of terminal electron-accepting processes. Our results show that organic-lean marine sediments in deep marine basins and oligotrophic open ocean locations are inhabited by distinct lineages of archaea that are not found in the more frequently studied, organic-rich continental margin sediments. We hypothesize that different combinations of electron donor and acceptor concentrations along the organic-rich/organic-lean spectrum result in distinct archaeal communities, and propose an integrated classification of habitat characteristics and archaeal community structure. PMID:22666218

Petroleum hydrocarbon concentrations in marine sediments along Chennai Coast, Bay of Bengal, India.

PubMed

Venkatachalapathy, R; Veerasingam, S; Ramkumar, T

2010-10-01

The spatial and temporal distribution of petroleum hydrocarbons (PHC) in marine sediments along the Chennai coast, Bay of Bengal was quantified by Ultra-Violet Fluorescence (UVF) Spectroscopy. The concentration of PHC in surface sediments varied from 1.88 to 39.76 ppm. The highest values obtained in the northern part of the study area, where shipping activities and land-based waste waters disposed into sea through the rivers like Kuvam and Adayar. The Adayar (7.26-16.83 ppm) and Kuvam (5.5-39.72 ppm) cores reveal a clear horizon of increase in PHC above 50 and 35 cm respectively. PHC values showed a decreasing pattern with depth in all sediment cores suggesting the excess anthropogenic loading occurring in the recent past. The present study revealed that the PHC values of Chennai coastal sediments are lower than the values reported from selected costal areas including the sediment of the Mumbai coast (7.6-42.8 ppm), Arabian Sea. The results will be useful for pollution monitoring program along the coastal region and also to check the level of petroleum hydrocarbons in marine sediments.

Trace Elements in Marine Sediment and Organisms in the Gulf of Thailand

PubMed Central

Worakhunpiset, Suwalee

2018-01-01

This review summarizes the findings from studies of trace element levels in marine sediment and organisms in the Gulf of Thailand. Spatial and temporal variations in trace element concentrations were observed. Although trace element contamination levels were low, the increased urbanization and agricultural and industrial activities may adversely affect ecosystems and human health. The periodic monitoring of marine environments is recommended in order to minimize human health risks from the consumption of contaminated marine organisms. PMID:29677146

Degradation of Herbicides in the Tropical Marine Environment: Influence of Light and Sediment

PubMed Central

Mercurio, Philip; Mueller, Jochen F.; Eaglesham, Geoff; O'Brien, Jake; Flores, Florita; Negri, Andrew P.

2016-01-01

Widespread contamination of nearshore marine systems, including the Great Barrier Reef (GBR) lagoon, with agricultural herbicides has long been recognised. The fate of these contaminants in the marine environment is poorly understood but the detection of photosystem II (PSII) herbicides in the GBR year-round suggests very slow degradation rates. Here, we evaluated the persistence of a range of commonly detected herbicides in marine water under field-relevant concentrations and conditions. Twelve-month degradation experiments were conducted in large open tanks, under different light scenarios and in the presence and absence of natural sediments. All PSII herbicides were persistent under control conditions (dark, no sediments) with half-lives of 300 d for atrazine, 499 d diuron, 1994 d hexazinone, 1766 d tebuthiuron, while the non-PSII herbicides were less persistent at 147 d for metolachlor and 59 d for 2,4-D. The degradation of herbicides was 2–10 fold more rapid in the presence of a diurnal light cycle and coastal sediments; apart from 2,4-D which degraded more slowly in the presence of light. Despite the more rapid degradation observed for most herbicides in the presence of light and sediments, the half-lives remained > 100 d for the PS II herbicides. The effects of light and sediments on herbicide persistence were likely due to their influence on microbial community composition and its ability to utilise the herbicides as a carbon source. These results help explain the year-round presence of PSII herbicides in marine systems, including the GBR, but more research on the transport, degradation and toxicity on a wider range of pesticides and their transformation products is needed to improve their regulation in sensitive environments. PMID:27806103

The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments

DOE PAGES

Scott, Nicole M.; Hess, Matthias; Bouskill, Nick J.; ...

2014-03-25

During hydrocarbon exposure, the composition and functional dynamics of marine microbial communities are altered, favoring bacteria that can utilize this rich carbon source. Initial exposure of high levels of hydrocarbons in aerobic surface sediments can enrich growth of heterotrophic microorganisms having hydrocarbon degradation capacity. As a result, there can be a localized reduction in oxygen potential within the surface layer of marine sediments causing anaerobic zones. We hypothesized that increasing exposure to elevated hydrocarbon concentrations would positively correlate with an increase in denitrification processes and the net accumulation of dinitrogen. This hypothesis was tested by comparing the relative abundance ofmore » genes associated with nitrogen metabolism and nitrogen cycling identified in 6 metagenomes from sediments contaminated by polyaromatic hydrocarbons from the Deepwater Horizon (DWH) oil spill in the Gulf of Mexico, and 3 metagenomes from sediments associated with natural oil seeps in the Santa Barbara Channel. An additional 8 metagenomes from uncontaminated sediments from the Gulf of Mexico were analyzed for comparison. We predicted relative changes in metabolite turnover as a function of the differential microbial gene abundances, which showed predicted accumulation of metabolites associated with denitrification processes, including anammox, in the contaminated samples compared to uncontaminated sediments, with the magnitude of this change being positively correlated to the hydrocarbon concentration and exposure duration. Furthermore, these data highlight the potential impact of hydrocarbon inputs on N cycling processes in marine sediments and provide information relevant for system scale models of nitrogen metabolism in affected ecosystems.« less

The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Scott, Nicole M.; Hess, Matthias; Bouskill, Nick J.

2014-03-25

During hydrocarbon exposure, the composition and functional dynamics of marine microbial communities are altered, favoring bacteria that can utilize this rich carbon source. Initial exposure of high levels of hydrocarbons in aerobic surface sediments can enrich growth of heterotrophic microorganisms having hydrocarbon degradation capacity. As a result, there can be a localized reduction in oxygen potential within the surface layer of marine sediments causing anaerobic zones. We hypothesized that increasing exposure to elevated hydrocarbon concentrations would positively correlate with an increase in denitrification processes and the net accumulation of dinitrogen. This hypothesis was tested by comparing the relative abundance ofmore » genes associated with nitrogen metabolism and nitrogen cycling identified in 6 metagenomes from sediments contaminated by polyaromatic hydrocarbons from the Deepwater Horizon (DWH) oil spill in the Gulf of Mexico, and 3 metagenomes from sediments associated with natural oil seeps in the Santa Barbara Channel. An additional 8 metagenomes from uncontaminated sediments from the Gulf of Mexico were analyzed for comparison. We predicted relative changes in metabolite turnover as a function of the differential microbial gene abundances, which showed predicted accumulation of metabolites associated with denitrification processes, including anammox, in the contaminated samples compared to uncontaminated sediments, with the magnitude of this change being positively correlated to the hydrocarbon concentration and exposure duration. These data highlight the potential impact of hydrocarbon inputs on N cycling processes in marine sediments and provide information relevant for system scale models of nitrogen metabolism in affected ecosystems« less

Fungi from Admiralty Bay (King George Island, Antarctica) Soils and Marine Sediments.

PubMed

Wentzel, Lia Costa Pinto; Inforsato, Fábio José; Montoya, Quimi Vidaurre; Rossin, Bruna Gomes; Nascimento, Nadia Regina; Rodrigues, André; Sette, Lara Durães

2018-06-19

Extreme environments such as the Antarctic can lead to the discovery of new microbial taxa, as well as to new microbial-derived natural products. Considering that little is known yet about the diversity and the genetic resources present in these habitats, the main objective of this study was to evaluate the fungal communities from extreme environments collected at Aldmiralty Bay (Antarctica). A total of 891 and 226 isolates was obtained from soil and marine sediment samples, respectively. The most abundant isolates from soil samples were representatives of the genera Leucosporidium, Pseudogymnoascus, and a non-identified Ascomycota NIA6. Metschnikowia sp. was the most abundant taxon from marine samples, followed by isolates from the genera Penicillium and Pseudogymnoascus. Many of the genera were exclusive in marine sediment or terrestrial samples. However, representatives of eight genera were found in both types of samples. Data from non-metric multidimensional scaling showed that each sampling site is unique in their physical-chemical composition and fungal community. Biotechnological potential in relation to enzymatic production at low/moderate temperatures was also investigated. Ligninolytic enzymes were produced by few isolates from root-associated soil. Among the fungi isolated from marine sediments, 16 yeasts and nine fungi showed lipase activity and three yeasts and six filamentous fungi protease activity. The present study permitted increasing our knowledge on the diversity of fungi that inhabit the Antarctic, finding genera that have never been reported in this environment before and discovering putative new species of fungi.

IMPORTANCE OF INTERSTITIAL, OVERLYING WATER AND WHOLE SEDIMENT EXPOSURES TO BIOACCUMUALTION BY MARINE BIVALVES

EPA Science Inventory

During the performance of contaminated sediment studies using nonpolar pollutants, like polyclorinated biphenyls (PCBs), with marine organisms, the routes of exposure can include whole sediment, overlying waters and interstitial waters (assuming no feeding). These routes can be f...

A novel approach to the assess biotic oxygen consumption in marine sediment communities

NASA Astrophysics Data System (ADS)

Baranov, Victor; Queiros, Ana; Widdicombe, Stephen; Stephens, Nick; Lessin, Gennadi; Krause, Stefan; Lewandowski, Joerg

2016-04-01

Bioturbation , the mixing of the sediment matrix by burrowing animals impacts sediment metabolism, including respiration through redistribution of particulate organics, changes in bacterial biota diversity and acitivity, as well as via burrowing fauna's own metabolism. Bioturbation, reflecting faunal activity, is also a proxy for the general sedimentary ecosystem health, and can be impacted by many of emerging marine environmental issues such as ocean acidification, warming and the occurrence of heat waves. Sedimentary oxygen consumption is often taken as a proxy for the activity of bioturbating fauna, but determining baselines can be difficult because of the confounding effects of other fauna and microbes present in sediments, as well as irnorganic processes that consume oxygen. Limitations therefore exist in current methodologies, and numerous confounding factors are hampering progress in this area. Here, we present novel method for the assessment of sediment respiration which is expected to be affected only by the biogenic oxygen consumption (namely aerobic respiration). As long as tracer reduction "immune" to inorganic oxygen consumption, so that measurements using this method can be used, alongside traditional methods, to decouple biological respiration from inorganic oxygen consumption reactions. The tracer is easily detectable, non-toxic and can be applied in systems with constant oxygen supply. The latter allow for incubation without the need to to work with unsealed experimental units, bringing procedural advantage over traditional methods. Consequently assessed bioturbating fauna is not exposed to hypoxia and additional stress. Here, we had applied system for the first time to investigate impacts of a common North-Atlantic bioturbator, the brittle star Amphiura filiformis, - on respiration of marine sediments. Two series of experiments were conducted with animals and sediment collected from Cawsand Bay, Plymouth, UK Preliminary results show that tracer

Heavy metals in marine coastal sediments: assessing sources, fluxes, history and trends.

PubMed

Frignani, Mauro; Bellucci, Luca Giorgio

2004-01-01

Examples are presented from the Adriatic Sea, the Ligurian Sea and the Venice Lagoon to illustrate different approaches to the study of anthropogenic metals in marine coastal sediments. These examples refer to studies of areal distribution and transport mechanisms, individuation of the sources, sediment dating, chronology of the fluxes, present and past trends. In particular, some of the findings achieved in studying the Venice Lagoon are discussed from the point of view of anthropogenic changes both in sediment composition and contaminant fluxes.

Depth Distribution and Assembly of Sulfate-Reducing Microbial Communities in Marine Sediments of Aarhus Bay

PubMed Central

Jochum, Lara M.; Chen, Xihan; Lever, Mark A.; Loy, Alexander; Jørgensen, Bo Barker; Schramm, Andreas

2017-01-01

ABSTRACT Most sulfate-reducing microorganisms (SRMs) present in subsurface marine sediments belong to uncultured groups only distantly related to known SRMs, and it remains unclear how changing geochemical zones and sediment depth influence their community structure. We mapped the community composition and abundance of SRMs by amplicon sequencing and quantifying the dsrB gene, which encodes dissimilatory sulfite reductase subunit beta, in sediment samples covering different vertical geochemical zones ranging from the surface sediment to the deep sulfate-depleted subsurface at four locations in Aarhus Bay, Denmark. SRMs were present in all geochemical zones, including sulfate-depleted methanogenic sediment. The biggest shift in SRM community composition and abundance occurred across the transition from bioturbated surface sediments to nonbioturbated sediments below, where redox fluctuations and the input of fresh organic matter due to macrofaunal activity are absent. SRM abundance correlated with sulfate reduction rates determined for the same sediments. Sulfate availability showed a weaker correlation with SRM abundances and no significant correlation with the composition of the SRM community. The overall SRM species diversity decreased with depth, yet we identified a subset of highly abundant community members that persists across all vertical geochemical zones of all stations. We conclude that subsurface SRM communities assemble by the persistence of members of the surface community and that the transition from the bioturbated surface sediment to the unmixed sediment below is a main site of assembly of the subsurface SRM community. IMPORTANCE Sulfate-reducing microorganisms (SRMs) are key players in the marine carbon and sulfur cycles, especially in coastal sediments, yet little is understood about the environmental factors controlling their depth distribution. Our results suggest that macrofaunal activity is a key driver of SRM abundance and community structure

A TOXICITY IDENTIFICATION EVALUATION OF SILTY MARINE HARBOR SEDIMENTS TO CHARACTERIZE PERSISTENT AND NON-PERSISTENT CONSTITUENTS

EPA Science Inventory

Sediment toxicity in silty marine harbor sediments is frequently dominated by ammonia or sulfide, leaving the adverse effects of persistent toxic substances unnoticed. To investigate the latter, we subjected interstitial water from three contaminated silty sediments to toxicity i...

Millimeter-scale alkalinity measurement in marine sediment using DET probes and colorimetric determination.

PubMed

Metzger, E; Viollier, E; Simonucci, C; Prévot, F; Langlet, D; Jézéquel, D

2013-10-01

Constrained DET (Diffusive Equilibration in Thin films) probes equipped with 75 sampling layers of agarose gel (DGT Research(©)) were used to sample bottom and pore waters in marine sediment with a 2 mm vertical resolution. After retrieval, each piece of hydrogel, corresponding to 25 μL, was introduced into 1 mL of colorimetric reagent (CR) solution consisting of formic acid and bromophenol blue. After the elution/reaction time, absorbance of the latter mixture was read at 590 nm and compared to a calibration curve obtained with the same protocol applied to mini DET probes soaked in sodium hydrogen carbonate standard solutions. This method allows rapid alkalinity determinations for the small volumes of anoxic pore water entrapped into the gel. The method was assessed on organic-rich coastal marine sediments from Thau lagoon (France). Alkalinity values in the overlying waters were in agreement with data obtained by classical sampling techniques. Pore water data showed a progressive increase of alkalinity in the sediment from 2 to 10 mmol kg(-1), corresponding to anaerobic respiration in organic-rich sediments. Moreover, replicates of high-resolution DET profiles showed important lateral heterogeneity at a decimeter scale. This underlines the importance of high-resolution spatial methods for alkalinity profiling in coastal marine systems. Copyright © 2013 Elsevier Ltd. All rights reserved.

The Scientific and Societal Need for Accurate Global Remote Sensing of Marine Suspended Sediments

NASA Technical Reports Server (NTRS)

Acker, James G.

2006-01-01

Population pressure, commercial development, and climate change are expected to cause continuing alteration of the vital oceanic coastal zone environment. These pressures will influence both the geology and biology of the littoral, nearshore, and continental shelf regions. A pressing need for global observation of coastal change processes is an accurate remotely-sensed data product for marine suspended sediments. The concentration, delivery, transport, and deposition of sediments is strongly relevant to coastal primary production, inland and coastal hydrology, coastal erosion, and loss of fragile wetland and island habitats. Sediment transport and deposition is also related to anthropogenic activities including agriculture, fisheries, aquaculture, harbor and port commerce, and military operations. Because accurate estimation of marine suspended sediment concentrations requires advanced ocean optical analysis, a focused collaborative program of algorithm development and assessment is recommended, following the successful experience of data refinement for remotely-sensed global ocean chlorophyll concentrations.

Terrestrial plant biopolymers in marine sediments

NASA Astrophysics Data System (ADS)

Gough, Mark A.; Fauzi, R.; Mantoura, C.; Preston, Martin

1993-03-01

The vascular land plant biopolymers lignin and cutin were surveyed in the surface sediments of coastal and open ocean waters by controlled alkaline CuO oxidation/reaction. Two contrasting oceanic regimes were studied: the northwest Mediterranean (NWM) Sea, which receives significant particulate terrigenous debris through riverine discharge; and the northeast Atlantic (NEA) Ocean, with poorly characterised terrestrial carbon inputs. In the NWM products of lignin and cutin co-occurred at all stations, elevated levels (ca. 0.5-3.0 mg lignin phenols/100 mg organic carbon; ca. 0.01-0.09 mg cutin acids/100 mg organic carbon) were observed for near-shore deltaic and shelf sediments. The influence of terrestrial land plant inputs extended across the shelf and through the slope to the abyssal plain, providing molecular evidence for advective offshore transfer of terrestrial carbon. Mass balance estimates for the basin suggest riverine inputs account for the majority of surface sedimentary lignin/cutin, most of which (>90%) is deposited on the shelf. Products of CuO oxidation of lignin and cutin were also detected in NEA surface sediments, at levels comparable to those observed for the NWM continental slope, and were detectable at low concentrations ( ca. 0.5 μgg-1 in the sediments of the abyssal plains (>4,000 m depth). While atmospheric deposition of lignin/cutin-derived material cannot be discounted in this open ocean system, lateral advective transfer of enriched shelf sediments is inferred as a possible transport process. A progressive enrichment in cutin-derived material relative to lignin was observed offshore, with evidence of an increase in the degree of oxidative alteration of lignin residues. To account for these observations, preferential offshore transport of finer and more degraded material is proposed. Nonspecific oxidation products dominated the gas chromatograms of NEA sediments, which appear to originate from marine sources of sedimentary organic carbon

Seismic peak amplitude as a predictor of TOC content in shallow marine sediments

NASA Astrophysics Data System (ADS)

Neto, Arthur Ayres; Mota, Bruno Bourguignon; Belem, André Luiz; Albuquerque, Ana Luiza; Capilla, Ramsés

2016-10-01

Acoustic remote sensing is a highly effective tool for exploring the seafloor of both deep and shallow marine settings. Indeed, the acoustic response depends on several physicochemical factors such as sediment grain size, bulk density, water content, and mineralogy. The objective of the present study is to assess the suitability of seismic peak amplitude as a predictor of total organic carbon (TOC) content in shallow marine sediments, based on data collected in the Cabo Frio mud belt in an upwelling zone off southeastern Brazil. These comprise records of P-wave velocity ( V P) along 680 km of high-resolution single-channel seismic surveys, combined with analyses of grain size, wet bulk density, absolute water content and TOC content for four piston-cores. TOC contents of sediments from 13 box-cores served to validate the methodology. The results show well-defined positive correlations between TOC content and mean grain size (phi scale) as well as absolute water content, and negative correlations with V P, wet bulk density, and acoustic impedance. These relationships yield a regression equation by which TOC content can be satisfactorily predicted on the basis of acoustic impedance for this region: y = - 4.84 ln( x) + 40.04. Indeed, the derived TOC contents differ by only 5% from those determined by geochemical analysis. After appropriate calibration, acoustic impedance can thus be conveniently used as a predictor of large-scale spatial distributions of organic carbon enrichment in marine sediments. This not only contributes to optimizing scientific project objectives, but also enhances the cost-effectiveness of marine surveys by greatly reducing the ship time commonly required for grid sampling.

Heat stress dictates microbial lipid composition in hydrothermal marine sediments

NASA Astrophysics Data System (ADS)

Sollich, M.; Yoshinaga, M. Y.; Häusler, S.; Hinrichs, K. U.; Bühring, S. I.

2016-02-01

Abundant and diverse microbial communities inhabit hydrothermal marine sediments. Since ion permeability of membranes increases with temperature archaea and bacteria that use proton/sodium as coupling ions for bioenergetics must constantly adjust their cytoplasmic membrane permeability, which in turn is mostly controlled by the lipid composition. Here, we investigated a thermal gradient across a marine sediment field (ranging from 18 to over 100°C) and tested the concept that membrane lipids provide a major biochemical basis for cellular bioenergetics of archaea and bacteria under stressful conditions. Reflecting the lower ion permeability of the ether-linked isoprenoidal lipids, we found that archaea dominate over bacteria in sediments of >50 °C. Moreover, a detailed examination of the molecular lipid species revealed a quandary: low membrane permeability concomitantly with increased fluidity is required for energy conservation of both archaea and bacteria under heat stress. For instance, bacterial fatty acids were found to increase chain length in concert with a higher degree of unsaturation at elevated sediment temperatures while archaeal tetraethers were observed to show a higher degree of bulking (e.g. methylation and H-shaped) and fluidity (i.e. cyclization) under elevated temperatures. In addition, our data indicate that strong intermolecular hydrogen bonding at the headgroup level of archaeal glycolipids and bacterial sphingolipids may provide ideal membrane stability to attain the required balance between low permeability and a more fluidized configuration. For example, sphingolipids may stabilize bacterial phospholipids into lipid domains, enabling bacteria to thrive in heated sediments under unfavorable thermodynamic conditions. The scientific marriage of lipidomics and bioenergetics described here provides a new dimension for understanding microbial life in natural environments.

Study on the sorption behaviour of estrone on marine sediments.

PubMed

Zhang, Jing; Yang, Gui-Peng; Li, Quan; Cao, Xiaoyan; Liu, Guangxing

2013-11-15

The sorption behaviour of estrone (E1) on marine sediments treated by different methods was systematically investigated. About 22 h was required for sorption equilibrium of E1. Sorption isotherms of E1 were well fitted with Freundlich model. The sorption behaviour of E1 on HCl-treatment and H2O-treatment sediments related significantly with the sediment organic carbon contents. Additionally, clay minerals and surface areas of sediments played dominant roles in the sorption of E1 on H2O2-treatment sediments. Some external factors which could affect sorption behaviour of E1 were also investigated. Our results showed that the sorption capacity of E1 on the sediments increased with the increasing concentrations of cationic surfactant cetyltrimethylammonium bromide (CTAB), nonionic surfactant polyoxyethylene (80) sorbitan esters (Tween 80) and salinity of seawater. In contrast, the sorption capacity of E1 decreased with the increasing concentration of anionic surfactant sodium dodecylbenzene sulfonate (SDBS), pH value and temperature of seawater. Copyright © 2013 Elsevier Ltd. All rights reserved.

Magnetic fingerprint in marine sediments: clues from cultivated Magnetovibrio blakemorei and recent cores from Brazilian Coast

NASA Astrophysics Data System (ADS)

Jovane, L.; Florindo, F.; Bazylinski, D. A.; Pellizari, V. H.; Brandini, F. P.; de Almeida, L. A.; Carneiro, F. R.; Braga, E. D.; Lins, U.

2013-12-01

The magnetic properties (first order reversal curves, ferromagnetic resonance and decomposition of saturation remanent magnetization acquisition) of Magnetovibrio blakemorei strain MV-1, a marine magnetotactic bacterium, differ from those of other magnetotactic species from sediments deposited in lakes and marine habitats previously studied. This finding suggests that magnetite produced by some magnetotactic bacteria retains magnetic properties in relation to the crystallographic structure of the magnetic phase produced and thus might represent a 'magnetic fingerprint' for a specific magnetotactic bacterium. The technique used to determine this fingerprint is a non-destructive, new technology that might allow for the identification and presence of specific species or types of magnetotactic bacteria in certain environments such as sediment. We also show some preliminary results on the biogeochemical factors that control magnetotactic bacterial populations, documenting the environment and the preservation of bacterial magnetite, which dominates the palaeomagnetic signal throughout recent sediments from Brazilian Coast. We searched for magnetotactic bacteria in order to understand the ecosystems and environmental change related to their presence in sediments. We focused on studying the environmental conditions that allow for the presence of magnetotactic bacteria and magnetosomes in sediments including determining magnetotactic bacterial populations in marine settings, measuring crucial nutrient availability in the water column and in sediments, and examining particulate delivery to the seafloor.

Development and Evaluation of Reverse Polyethylene Samplers for Marine Phase II Whole-Sediment Toxicity Identification Evaluation

EPA Science Inventory

Marine and estuarine sediments accumulate contaminants and act as a sink for a wide range of toxic chemicals. As a result, the sediments themselves can become a source of contamination. At sufficient levels, contaminated sediments can cause benthic impairments and toxicity to mar...

Marine fungi isolated from Chilean fjord sediments can degrade oxytetracycline.

PubMed

Ahumada-Rudolph, R; Novoa, V; Sáez, K; Martínez, M; Rudolph, A; Torres-Diaz, C; Becerra, J

2016-08-01

Salmon farming is the main economic activity in the fjords area of Southern Chile. This activity requires the use of antibiotics, such as oxytetracycline, for the control and prevention of diseases, which have a negative impact on the environment. We analyzed the abilities of endemic marine fungi to biodegrade oxytetracycline, an antibiotic used extensively in fish farming. We isolated marine fungi strains from sediment samples obtained from an area of fish farming activity. The five isolated strains showed an activity on oxytetracycline and were identified as Trichoderma harzianum, Trichoderma deliquescens, Penicillium crustosum, Rhodotorula mucilaginosa, and Talaromyces atroroseus by a scanning electron microscopy and characterized by molecular techniques. Results showed significant degradation in the concentration of oxytetracycline at the first 2 days of treatment for all strains analyzed. At 21 days of treatment, the concentration of oxytetracycline was decreased 92 % by T. harzianum, 85 % by T. deliquescens, 83 % by P. crustosum, 73 % by R. mucilaginosa, and 72 % by T. atroroseus, all of which were significantly higher than the controls. Given these results, we propose that fungal strains isolated from marine sediments may be useful tools for biodegradation of antibiotics, such as oxytetracycline, in the salmon industry.

USE OF ULVA LACTUCA TO DISTINGUISH PH DEPENDENT TOXICANTS IN MARINE WATERS AND SEDIMENTS

EPA Science Inventory

Ulva lactuca (sea lettuce) is a cosmopolitan marine attached green seaweed capable of sequestering high environmental levels of ammonia. Ammonia can be acutely toxic to marine organisms and is often found in dredged sediments from highly industrial areas or from areas with high c...

Study of photocatalytic degradation of tributyltin, dibutylin and monobutyltin in water and marine sediments.

PubMed

Brosillon, Stephan; Bancon-Montigny, Chrystelle; Mendret, Julie

2014-08-01

This study reports on the first assessment of the treatment of sediments contaminated by organotin compounds using heterogeneous photocatalysis. Photocatalysis of organotins in water was carried out under realistic concentration conditions (μgL(-1)). Degradation compounds were analyzed by GC-ICP-MS; a quasi-complete degradation of tributyltin (TBT) in water (99.8%) was achieved after 30min of photocatalytic treatment. The degradation by photolysis was about (10%) in the same conditions. For the first time decontamination of highly polluted marine sediments (certified reference material and harbor sediments) by photocatalysis proves that the use of UV and the production of hydroxyl radicals are an efficient way to treat organotins adsorbed onto marine sediment despite the complexity of the matrix. In sediment, TBT degradation yield ranged from 32% to 37% after only 2h of irradiation (TiO2-UV) and the by-products: dibutyltin (DBT) and monobutyltin (MBT) were degraded very rapidly in comparison with TBT. It was shown that during photocatalysis of organotins in sediments, the hydroxyl radical attack and photolysis are the two ways for the degradation of adsorbed TBT. Copyright © 2014 Elsevier Ltd. All rights reserved.

Elucidating Microbial Species-Specific Effects on Organic Matter Transformation in Marine Sediments

NASA Astrophysics Data System (ADS)

Mahmoudi, N.; Enke, T. N.; Beaupre, S. R.; Teske, A.; Cordero, O. X.; Pearson, A.

2017-12-01

Microbial transformation and decomposition of organic matter in sediments constitutes one of the largest fluxes of carbon in marine environments. Mineralization of sedimentary organic matter by microorganisms results in selective degradation such that bioavailable or accessible compounds are rapidly metabolized while more recalcitrant, complex compounds are preserved and buried in sediment. Recent studies have found that the ability to use different carbon sources appears to vary among microorganisms, suggesting that the availability of certain pools of carbon can be specific to the taxa that utilize the pool. This implies that organic matter mineralization in marine environments may depend on the metabolic potential of the microbial populations that are present and active. The goal of our study was to investigate the extent to which organic matter availability and transformation may be species-specific using sediment from Guaymas Basin (Gulf of California). We carried out time-series incubations using bacterial isolates and sterilized sediment in the IsoCaRB system which allowed us to measure the production rates and natural isotopic signatures (δ13C and Δ14C) of microbially-respired CO2. Separate incubations using two different marine bacterial isolates (Vibrio sp. and Pseudoalteromonas sp.) and sterilized Guaymas Basin sediment under oxic conditions showed that the rate and total quantity of organic matter metabolized by these two species differs. Approximately twice as much CO2 was collected during the Vibrio sp. incubation compared to the Pseudoalteromonas sp. incubation. Moreover, the rate at which organic matter was metabolized by the Vibrio sp. was much higher than the Pseudoalteromonas sp. indicating the intrinsic availability of organic matter in sediments may depend on the species that is present and active. Isotopic analyses of microbially respired CO2 will be used to constrain the type and age of organic matter that is accessible to each species

Demethylation and cleavage of dimethylsulfoniopropionate in marine intertidal sediments

USGS Publications Warehouse

Visscher, P.T.; Kiene, R.P.; Taylor, B.F.

1994-01-01

Demethylation and cleavage of dimethylsulfoniopropionate (DMSP) was measured in three different types of,intertidal marine sediments: a cyanobacterial mat, a diatom-covered tidal flat and a carbonate sediment. Consumption rates of added DMSP were highest in cyanobacterial mat slurries (59 ?? mol DMSP l-1 slurry h-1) and lower in slurries from a diatom mat and a carbonate tidal sediment (24 and 9 ??mol DMSP l-1 h-1, respectively). Dimethyl sulfide (DMS) and 3-mercaptopropionate (MPA) were produced simultaneously during DMSP consumption, indicating that cleavage and demethylation occurred at the same time. Viable counts of DMSP-utilizing bacteria revealed a population of 2 x 107 cells cm-3 sediment (90% of these cleaved DMSP to DMS, 10% demethylated DMSP to MPA) in the cyanobacterial mat, 7 x 105 cells cm-3 in the diatom mat (23% cleavers, 77% demethylators), and 9 x 104 cells cm-3 (20% cleavers and 80% demethylators) in the carbonate sediment. In slurries of the diatom mat, the rate of MPA production from added 3-methiolpropionate (MMPA) was 50% of the rate of MPA formation from DMSP. The presence of a large population of demethylating bacteria and the production of MPA from DMSP suggest that the demethylation pathway, in addition to cleavage, contributes significantly to DMSP consumption in coastal sediments.

Kinetic parameters for nutrient enhanced crude oil biodegradation in intertidal marine sediments

PubMed Central

Singh, Arvind K.; Sherry, Angela; Gray, Neil D.; Jones, D. Martin; Bowler, Bernard F. J.; Head, Ian M.

2014-01-01

Availability of inorganic nutrients, particularly nitrogen and phosphorous, is often a primary control on crude oil hydrocarbon degradation in marine systems. Many studies have empirically determined optimum levels of inorganic N and P for stimulation of hydrocarbon degradation. Nevertheless, there is a paucity of information on fundamental kinetic parameters for nutrient enhanced crude oil biodegradation that can be used to model the fate of crude oil in bioremediation programmes that use inorganic nutrient addition to stimulate oil biodegradation. Here we report fundamental kinetic parameters (Ks and qmax) for nitrate- and phosphate-stimulated crude oil biodegradation under nutrient limited conditions and with respect to crude oil, under conditions where N and P are not limiting. In the marine sediments studied, crude oil degradation was limited by both N and P availability. In sediments treated with 12.5 mg/g of oil but with no addition of N and P, hydrocarbon degradation rates, assessed on the basis of CO2 production, were 1.10 ± 0.03 μmol CO2/g wet sediment/day which were comparable to rates of CO2 production in sediments to which no oil was added (1.05 ± 0.27 μmol CO2/g wet sediment/day). When inorganic nitrogen was added alone maximum rates of CO2 production measured were 4.25 ± 0.91 μmol CO2/g wet sediment/day. However, when the same levels of inorganic nitrogen were added in the presence of 0.5% P w/w of oil (1.6 μmol P/g wet sediment) maximum rates of measured CO2 production increased more than four-fold to 18.40 ± 1.04 μmol CO2/g wet sediment/day. Ks and qmax estimates for inorganic N (in the form of sodium nitrate) when P was not limiting were 1.99 ± 0.86 μmol/g wet sediment and 16.16 ± 1.28 μmol CO2/g wet sediment/day respectively. The corresponding values for P were 63 ± 95 nmol/g wet sediment and 12.05 ± 1.31 μmol CO2/g wet sediment/day. The qmax values with respect to N and P were not significantly different (P < 0.05). When N and P

Heterotrophic potential of Atribacteria from deep marine Antarctic sediment

NASA Astrophysics Data System (ADS)

Carr, S. A.; Orcutt, B.; Mandernack, K. W.; Spear, J. R.

2015-12-01

Bacteria belonging to the newly classified candidate phylum "Atribacteria" (formerly referred to as "OP9" and "JS1") are common in anoxic methane-rich sediments. However, the metabolic functions and biogeochemical role of these microorganisms in the subsurface remains unrealized due to the lack of pure culture representatives. This study observed a steady increase of Atribacteria-related sequences with increasing sediment depth throughout the methane-rich zone of the Adélie Basin, Antarctica (according to a 16S rRNA gene survey). To explore the functional potential of Atribacteria in this basin, samples from various depths (14, 25 and 97 meters below seafloor), were subjected to metagenomic sequencing. Additionally, individual cells were separated from frozen, unpreserved sediment for whole genome amplification. The successful isolation and sequencing of a single-amplified Atribacteria genome from these unpreserved sediments demonstrates a future use of single cell techniques with previously collected and frozen sediments. Our resulting single-cell amplified genome, combined with metagenomic interpretations, provides our first insights to the functional potential of Atribacteria in deep subsurface settings. As observed for non-marine Atribacteria, genomic analyses suggest a heterotrophic metabolism, with Atribacteria potentially producing fermentation products such as acetate, ethanol and CO2. These products may in turn support methanogens within the sediment microbial community and explain the frequent occurrence of Atribacteria in anoxic methane-rich sediments.

Speciation of butyltin compounds in marine sediments with headspace solid phase microextraction and gas chromatography mass spectrometry.

PubMed

Cardellicchio, N; Giandomenico, S; Decataldo, A; Di Leo, A

2001-03-01

A method for the determination of organotin compounds (monobutyl = MBT, dibutyl = DBT, and tributyltin = TBT) in marine sediments by headspace Solid Phase Microextraction (SPME) has been developed. The analytical procedure involved 1) extraction of TBT, DBT and MBT from sediments with HCl and methanol mixture, 2) in situ derivatization with sodium tetraethylborate and 3) headspace SPME extraction using a fiber coated with poly(dimethylsiloxane). The derivatized organotin compounds were desorbed into the splitless injector and simultaneously analyzed by gas chromatography - mass spectrometry. The analytical method was optimized with respect to derivatization reaction and extraction conditions. The detection limits obtained for MBT, DBT and TBT ranged from 730 to 969 pg/g as Sn dry weight. Linear calibration curves were obtained for all analytes in the range of 30-1000 ng/L as Sn. Analysis of a standard reference sediment (CRM 462) demonstrates the suitability of this method for the determination of butyltin compounds in marine sediments. The application to the determination of TBT, DBT and MBT in a coastal marine sediment is shown.

Significant contribution of Archaea to extant biomass in marine subsurface sediments.

PubMed

Lipp, Julius S; Morono, Yuki; Inagaki, Fumio; Hinrichs, Kai-Uwe

2008-08-21

Deep drilling into the marine sea floor has uncovered a vast sedimentary ecosystem of microbial cells. Extrapolation of direct counts of stained microbial cells to the total volume of habitable marine subsurface sediments suggests that between 56 Pg (ref. 1) and 303 Pg (ref. 3) of cellular carbon could be stored in this largely unexplored habitat. From recent studies using various culture-independent techniques, no clear picture has yet emerged as to whether Archaea or Bacteria are more abundant in this extensive ecosystem. Here we show that in subsurface sediments buried deeper than 1 m in a wide range of oceanographic settings at least 87% of intact polar membrane lipids, biomarkers for the presence of live cells, are attributable to archaeal membranes, suggesting that Archaea constitute a major fraction of the biomass. Results obtained from modified quantitative polymerase chain reaction and slot-blot hybridization protocols support the lipid-based evidence and indicate that these techniques have previously underestimated archaeal biomass. The lipid concentrations are proportional to those of total organic carbon. On the basis of this relationship, we derived an independent estimate of amounts of cellular carbon in the global marine subsurface biosphere. Our estimate of 90 Pg of cellular carbon is consistent, within an order of magnitude, with previous estimates, and underscores the importance of marine subsurface habitats for global biomass budgets.

Magnetotactic bacteria in marine sediments: clues from recent cores from Brazilian Coast

NASA Astrophysics Data System (ADS)

Jovane, L.; Pellizari, V. H.; Brandini, F. P.; Braga, E. D. S.; Freitas, G. R.; Benites, M.; Rodelli, D.; Giorgioni, M.; Iacoviello, F.; Ruffato, D. G.; Lins, U.

2014-12-01

The magnetic properties (first order reversal curves, ferromagnetic resonance and decomposition of saturation remanent magnetization acquisition) of marine magnetotactic bacteria, in conjunction with geophysical, geochemical and oceanographic data from the Brazilian Coast, provide interesting insights regarding the primary productivity distribution in oceans. This finding suggests that magnetite produced by some magnetotactic bacteria retains magnetic properties in relation to the crystallographic structure of the magnetic phase produced and thus might represent a "magnetic fingerprint" for the presence of magnetotactic bacteria. The use of those magnetic properties is a non-destructive, new technology that might allow for the identification and presence of specific species or types of magnetotactic bacteria in certain environments such as sediment. We will also show some preliminary results on the biogeochemical factors that control magnetotactic bacterial populations, documenting the environment and the preservation of bacterial magnetite, which dominates the palaeomagnetic signal throughout recent sediments from Brazilian Coast. We searched for magnetotactic bacteria in order to understand the ecosystems and environmental change related to their presence in sediments. We studied magnetotactic bacterial concentration and geophysical, geochemical and oceanographic results in marine settings measuring crucially nutrients availability in the water column and in sediments, on particulate delivery to the seafloor, to understand the environmental condition that allow the presence of magnetotactic bacteria and magnetosomes in sediments.

[Cloning, expression and characterization of a novel esterase from marine sediment microbial metagenomic library].

PubMed

Xu, Shiqing; Hu, Yongfei; Yuan, Aihua; Zhu, Baoli

2010-07-01

To clone, express and characterize a novel esterase from marine sediment microbial metagenomic library. Using esterase segregation agar containing tributyrin, we obtained esterase positive fosmid clone FL10 from marine sediment microbial metagenomic library. This fosmid was partially digested with Sau3A I to construct the sublibrary, from which the esterase positive subclone pFLS10 was obtained. The full length of the esterase gene was amplified and cloned into the expressing vector pET28a, and the recombinant plasmid was transformed into E. coli BL21 cells. We analyse the enzyme activity and study the characterization of the esterase after its expression and purification. An ORF (Open Reading Frame) of 924 bp was identified from the subclone pFLS10. Sequence analysis indicated that it showed 71% amino acid identity to esterase (ADA70030) from a marine sediment metagenomic library. The esterase is a novel low-temperature-active esterase and had highest lipolytic activity to the substrate of 4-nitrophenyl butyrate (C4). The optimum temperature of the esterase was 20 degrees C, the optimum pH was 7.5. The esterase in this study had good thermostability at 20 degrees C and good pH stability at pH8 -10. Significant increase in lipolytic activity was observed with addition of K+ and Mg2+, while decrease with Mn2+ etc. We obtained the novel esterase gene fls10 from the marine sediment microbial metagenomic library. The esterase had good thermostability and high lipolytic activity at low temperature and under basic conditions, which laid a basis for industrial application.

Trace element storage capacity of sediments in dead Posidonia oceanica mat from a chronically contaminated marine ecosystem.

PubMed

Di Leonardo, Rossella; Mazzola, Antonio; Cundy, Andrew B; Tramati, Cecilia Doriana; Vizzini, Salvatrice

2017-01-01

Posidonia oceanica mat is considered a long-term bioindicator of contamination. Storage and sequestration of trace elements and organic carbon (C org ) were assessed in dead P. oceanica mat and bare sediments from a highly polluted coastal marine area (Augusta Bay, central Mediterranean). Sediment elemental composition and sources of organic matter have been altered since the 1950s. Dead P. oceanica mat displayed a greater ability to bury and store trace elements and C org than nearby bare sediments, acting as a long-term contaminant sink over the past 120 yr. Trace elements, probably associated with the mineral fraction, were stabilized and trapped despite die-off of the overlying P. oceanica meadow. Mat deposits registered historic contamination phases well, confirming their role as natural archives for recording trace element trends in marine coastal environments. This sediment typology is enriched with seagrass-derived refractory organic matter, which acts mainly as a diluent of trace elements. Bare sediments showed evidence of inwash of contaminated sediments via reworking; more rapid and irregular sediment accumulation; and, because of the high proportions of labile organic matter, a greater capacity to store trace elements. Through different processes, both sediment typologies represent a repository for chemicals and may pose a risk to the marine ecosystem as a secondary source of contaminants in the case of sediment dredging or erosion. Environ Toxicol Chem 2017;36:49-58. © 2016 SETAC. © 2016 SETAC.

Magnet-Facilitated Selection of Electrogenic Bacteria from Marine Sediment

PubMed Central

Kiseleva, Larisa; Briliute, Justina; Khilyas, Irina V.; Simpson, David J. W.; Fedorovich, Viacheslav; Cohen, M.; Goryanin, Igor

2015-01-01

Some bacteria can carry out anaerobic respiration by depositing electrons on external materials, such as electrodes, thereby creating an electrical current. Into the anode chamber of microbial fuel cells (MFCs) having abiotic air-cathodes we inoculated microorganisms cultured from a magnetic particle-enriched portion of a marine tidal sediment, reasoning that since some external electron acceptors are ferromagnetic, electrogenic bacteria should be found in their vicinity. Two MFCs, one inoculated with a mixed bacterial culture and the other with an axenic culture of a helical bacterium isolated from the magnetic particle enrichment, termed strain HJ, were operated for 65 d. Both MFCs produced power, with production from the mixed culture MFC exceeding that of strain HJ. Strain HJ was identified as a Thalassospira sp. by transmission electron microscopic analysis and 16S rRNA gene comparisons. An MFC inoculated with strain HJ and operated in open circuit produced 47% and 57% of the maximal power produced from MFCs inoculated with the known electrogen Geobacter daltonii and the magnetotactic bacterium Desulfamplus magnetomortis, respectively. Further investigation will be needed to determine whether bacterial populations associated with magnetic particles within marine sediments are enriched for electrogens. PMID:26504814

Magnet-Facilitated Selection of Electrogenic Bacteria from Marine Sediment.

PubMed

Kiseleva, Larisa; Briliute, Justina; Khilyas, Irina V; Simpson, David J W; Fedorovich, Viacheslav; Cohen, M; Goryanin, Igor

2015-01-01

Some bacteria can carry out anaerobic respiration by depositing electrons on external materials, such as electrodes, thereby creating an electrical current. Into the anode chamber of microbial fuel cells (MFCs) having abiotic air-cathodes we inoculated microorganisms cultured from a magnetic particle-enriched portion of a marine tidal sediment, reasoning that since some external electron acceptors are ferromagnetic, electrogenic bacteria should be found in their vicinity. Two MFCs, one inoculated with a mixed bacterial culture and the other with an axenic culture of a helical bacterium isolated from the magnetic particle enrichment, termed strain HJ, were operated for 65 d. Both MFCs produced power, with production from the mixed culture MFC exceeding that of strain HJ. Strain HJ was identified as a Thalassospira sp. by transmission electron microscopic analysis and 16S rRNA gene comparisons. An MFC inoculated with strain HJ and operated in open circuit produced 47% and 57% of the maximal power produced from MFCs inoculated with the known electrogen Geobacter daltonii and the magnetotactic bacterium Desulfamplus magnetomortis, respectively. Further investigation will be needed to determine whether bacterial populations associated with magnetic particles within marine sediments are enriched for electrogens.

Landslide-dammed paleolake perturbs marine sedimentation and drives genetic change in anadromous fish.

PubMed

Mackey, Benjamin H; Roering, Joshua J; Lamb, Michael P

2011-11-22

Large bedrock landslides have been shown to modulate rates and processes of river activity by forming dams, forcing upstream aggradation of water and sediment, and generating catastrophic outburst floods. Less apparent is the effect of large landslide dams on river ecosystems and marine sedimentation. Combining analyses of 1-m resolution topographic data (acquired via airborne laser mapping) and field investigation, we present evidence for a large, landslide-dammed paleolake along the Eel River, CA. The landslide mass initiated from a high-relief, resistant outcrop which failed catastrophically, blocking the Eel River with an approximately 130-m-tall dam. Support for the resulting 55-km-long, 1.3-km(3) lake includes subtle shorelines cut into bounding terrain, deltas, and lacustrine sediments radiocarbon dated to 22.5 ka. The landslide provides an explanation for the recent genetic divergence of local anadromous (ocean-run) steelhead trout (Oncorhynchus mykiss) by blocking their migration route and causing gene flow between summer run and winter run reproductive ecotypes. Further, the dam arrested the prodigious flux of sediment down the Eel River; this cessation is recorded in marine sedimentary deposits as a 10-fold reduction in deposition rates of Eel-derived sediment and constitutes a rare example of a terrestrial event transmitted through the dispersal system and recorded offshore.

Copper isotope signatures in modern marine sediments

NASA Astrophysics Data System (ADS)

Little, Susan H.; Vance, Derek; McManus, James; Severmann, Silke; Lyons, Timothy W.

2017-09-01

The development of metal stable isotopes as tools in paleoceanography requires a thorough understanding of their modern marine cycling. To date, no Cu isotope data has been published for modern sediments deposited under low oxygen conditions. We present data encompassing a broad spectrum of hydrographic and redox regimes, including continental margin and euxinic (sulphide-containing) settings. Taken together with previously published data from oxic settings, these data indicate that the modern oceanic sink for Cu has a surprisingly homogeneous isotopic composition of about +0.3‰ (δ65Cu, relative to NIST SRM976). We suggest that this signature reflects one of two specific water-column processes: (1) an equilibrium isotope fractionation between soluble, isotopically heavy, Cu complexed to strong organic ligands and an isotopically light pool sorbed to particles that deliver Cu to the sediment, or (2) an equilibrium isotope fractionation between the same isotopically heavy ligand-bound pool and the particle reactive free Cu2+ species, with the latter being scavenged by particulates and thereby delivered to the sediment. An output flux of about +0.3‰ into sediments is isotopically light relative to the known inputs to the ocean (at around +0.6‰) and the seawater value of +0.6 to +0.9‰, suggesting the presence of an as yet unidentified isotopically light source of Cu to the oceans. We hypothesize that this source may be hydrothermal, or may result from the partial dissolution of continentally derived particles.

INTERLABORATORY COMPARISON OF A REDUCED VOLUME MARINE SEDIMENT TOXICITY TEST METHOD USING AMPHIPOD AMPELISCA ABDITA

EPA Science Inventory

The U.S. Environmental Protection Agency has standardized methods for performing acute marine amphipod sediment toxicity tests. A test design reducing sediment volume from 200 to 50 ml and overlying water from 600 to 150 ml was recently proposed. An interlaboratory comparison wa...

Time Matters: Increasing the Efficiency of Antarctic Marine Geology and Paleoceanography Expeditions by Providing Improved Sediment Chronology

NASA Astrophysics Data System (ADS)

Rosenheim, B. E.; Domack, E. W.; Shevenell, A.; Subt, C.

2015-12-01

To maximize the areal extent of Antarctic sedimentary records of past deglaciation, it is necessary to ensure more sediment cores can be adequately dated. Antarctic margin sediment is challenging to date due to the lack of preserved calcium carbonate, but the records contained in these sediments readily recount the history of deglaciation. Recent and continued development of new chronological methods for Antarctic margin sediments have allowed better use of the efforts of marine geological coring expeditions to the region. The development of Ramped PyrOx radiocarbon dating has allowed us to 1. improve dates in deglacial sediments where no carbonate is preserved, 2. date glacial sediments lying below the tills marking the last glaciation, and 3. compile core chronologies into a regional framework of ice shelf collapse that has eluded many marine geology campaigns over the last few decades. These advances in a fundamental aspect of geological sciences will put the U.S. and international community on a better foothold to interpret the past as it relates to our warming future. We will present these advances in chronology as well as the science that is enabled by them, while arguing that the future of Antarctic marine science also depends on investments in shore-based technologies that come at a relatively low cost.

Development and Evaluation of Polychaete Reverse Samplers for Marine Phase II Whole Sediment Toxicitiy Identification Evaluations (TIE)

EPA Science Inventory

Marine and estuarine sediments accumulate contaminants and act as a sink for a wide range of toxic chemicals. As a result, the sediments themselves can become a source of contamination. At sufficient levels, contaminated sediments can cause benthic impairments and toxicity to m...

Depositional environments and processes in Upper Cretaceous nonmarine and marine sediments, Ocean Point dinosaur locality, North Slope, Alaska

USGS Publications Warehouse

Phillips, R.L.

2003-01-01

A 178-m-thick stratigraphic section exposed along the lower Colville River in northern Alaska, near Ocean Point, represents the uppermost part of a 1500 m Upper Cretaceous stratigraphic section. Strata exposed at Ocean Point are assigned to the Prince Creek and Schrader Bluff formations. Three major depositional environments are identified consisting, in ascending order, of floodplain, interdistributary-bay, and shallow-marine shelf. Nonmarine strata, comprising the lower 140 m of this section, consist of fluvial distributaries, overbank sediments, tephra beds, organic-rich beds, and vertebrate remains. Tephras yield isotopic ages between 68 and 72.9 Ma, generally consistent with paleontologic ages of late Campanian-Maastrichtian determined from dinosaur remains, pollen, foraminifers, and ostracodes. Meandering low-energy rivers on a low-gradient, low-relief floodplain carried a suspended-sediment load. The rivers formed multistoried channel deposits (channels to 10 m deep) as well as solitary channel deposits (channels 2-5 m deep). Extensive overbank deposits resulting from episodic flooding formed fining-upward strata on the floodplain. The fining-upward strata are interbedded with tephra and beds of organic-rich sediment. Vertical-accretion deposits containing abundant roots indicate a sheet flood origin for many beds. Vertebrate and nonmarine invertebrate fossils along with plant debris were locally concentrated in the floodplain sediment. Deciduous conifers as well as abundant wetland plants, such as ferns, horsetails, and mosses, covered the coastal plain. Dinosaur skeletal remains have been found concentrated in floodplain sediments in organic-rich bone beds and as isolated bones in fluvial channel deposits in at least nine separate horizons within a 100-m-thick interval. Arenaceous foraminifers in some organic-rich beds and shallow fluvial distributaries indicate a lower coastal plain environment with marginal marine (bay) influence. Marginal marine strata

REMOVAL OF AMMONIA TOXCITY IN MARINE SEDIMENT TIES: A COMPARISON OF ULVA LACTUCA, ZEOLITE AND AREATION METHODS

EPA Science Inventory

Ammonia is suspected of causing some of the toxicity observed in marine sediment toxicity tests because it is sometimes found at elevated concentrations in marine interstitial waters. In marine waters, ammonia exists as un-ionized ammonia (NH3) and ammonium (NH4+) which combine ...

Effects of Feeding Strategy, Sediment Characteristics, and Chemical Properties on Polychlorinated Biphenyl and Polybrominated Diphenyl Ether Bioaccumulation from Marine Sediments in Two Invertebrates.

PubMed

Frouin, H; Jackman, P; Dangerfield, N D; Ross, P S

2017-08-01

Shellfish and sediment invertebrates have been widely used to assess pollution trends over space and time in coastal environments around the world. However, few studies have compared the bioaccumulation potential of different test species over a range of sediment-contaminant concentrations and profiles. The bioavailability of sediment-related contaminants was evaluated using sediments collected from sites (n = 12) throughout the Salish Sea, British Columbia, Canada. Two benthic marine invertebrates-the Baltic clam Macoma balthica and the polychaete worm Neanthes arenaceodentata-were exposed for 28 days in a controlled environment to these field-collected coastal sediments. The congener-specific uptake of legacy polychlorinated biphenyls (PCBs) and emergent polybrominated diphenyl ethers (PBDEs) was determined using high-resolution gas chromatography/mass spectrometry in sediments and in invertebrates after the experimental exposure. The polychaete Neanthes accumulated lower concentrations of PCBs but higher concentrations of PBDEs. The present study indicates that differences in bioaccumulation between these two invertebrates shape the accumulation of PCB and PBDE congeners, reflect differences in feeding strategies, and reveal the physicochemical properties of the contaminants and sediment properties. Because biota-sediment accumulation factor values are often calculated for environmental monitoring or site-specific impact assessments, our results provide insight into potentially confounding factors and the need for caution when selecting indicator species for coastal marine pollution.

Bioprospecting of Novel and Bioactive Compounds from Marine Actinomycetes Isolated from South China Sea Sediments.

PubMed

Yang, Na; Song, Fuhang

2018-02-01

Marine actinomycetes are less investigated compared to terrestrial strains as potential sources of natural products. To date, few investigations have been performed on culturable actinomycetes associated with South China Sea sediments. In the present study, twenty-eight actinomycetes were recovered from South China Sea sediments after dereplication by traditional culture-dependent method. The 16S rRNA gene sequences analyses revealed that these strains related to five families and seven genera. Twelve representative strains possessed at least one of the biosynthetic genes coding for polyketide synthase I, II, and nonribosomal peptide synthetase. Four strains had anti-Mycobacterium phlei activities and five strains had activities against methicillin-resistant Staphylococcus aureus. 10 L-scale fermentation of strains Salinispora sp. NHF45, Nocardiopsis sp. NHF48, and Streptomyces sp. NHF86 were carried out for novel and bioactive compounds discovery. Finally, we obtained a novel α-pyrone compound from marine Nocardiopsis sp. NHF48, an analogue of paulomenol from marine Streptomyces sp. NHF86 and a new source of rifamycin B, produced by Salinispora sp. NHF45. The present study concluded that marine actinomycetes, which we isolated from South China Sea sediments, will be a suitable source for the development of novel and bioactive compounds.

EXTRACTION OF ORGANIC CONTAMINANTS FROM MARINE SEDIMENTS AND TISSUES USING MICROWAVE ENERGY

EPA Science Inventory

In this study, we compared microwave solvent extraction (MSE) to conventional methods for extracting organic contaminants from marine sediments and tissues with high and varying moisture content. The organic contaminants measured were polychlorinated biphenyl (PCB) congeners, chl...

Immune response of greenback flounder Rhombosolea tapirina after exposure to contaminated marine sediment and diet.

PubMed

Mondon, J A; Duda, S; Nowak, B F

2000-01-01

Non-specific immune response of greenback flounder, Rhombosolea tapirina, exposed to contaminated marine sediments was examined. Reference sediments from Port Sorell and contaminated sediments from Deceitful Cove, Tasmania, Australia were investigated. Hatchery-reared flounder were exposed to reference sediment, contaminated sediment or contaminated sediment and diet for 6 weeks. Phagocytic capacity and lysozyme response in flounder were examined on cessation of exposure trial. Significant differences were found in phagocytic capacity and lysozyme response between treatments. Exposure to contaminated sediment, irrespective of diet or benthic disturbance elicited inhibition of phagocytic efficiency in flounder. Disturbance of contaminated sediment stimulated lysozyme activity. The immune response in flounder indicates potential immunotoxicity of sediment from Deceitful Cove.

Novel aromatic ring-hydroxylating dioxygenase genes from coastal marine sediments of Patagonia

PubMed Central

Lozada, Mariana; Riva Mercadal, Juan P; Guerrero, Leandro D; Di Marzio, Walter D; Ferrero, Marcela A; Dionisi, Hebe M

2008-01-01

Background Polycyclic aromatic hydrocarbons (PAHs), widespread pollutants in the marine environment, can produce adverse effects in marine organisms and can be transferred to humans through seafood. Our knowledge of PAH-degrading bacterial populations in the marine environment is still very limited, and mainly originates from studies of cultured bacteria. In this work, genes coding catabolic enzymes from PAH-biodegradation pathways were characterized in coastal sediments of Patagonia with different levels of PAH contamination. Results Genes encoding for the catalytic alpha subunit of aromatic ring-hydroxylating dioxygenases (ARHDs) were amplified from intertidal sediment samples using two different primer sets. Products were cloned and screened by restriction fragment length polymorphism analysis. Clones representing each restriction pattern were selected in each library for sequencing. A total of 500 clones were screened in 9 gene libraries, and 193 clones were sequenced. Libraries contained one to five different ARHD gene types, and this number was correlated with the number of PAHs found in the samples above the quantification limit (r = 0.834, p < 0.05). Overall, eight different ARHD gene types were detected in the sediments. In five of them, their deduced amino acid sequences formed deeply rooted branches with previously described ARHD peptide sequences, exhibiting less than 70% identity to them. They contain consensus sequences of the Rieske type [2Fe-2S] cluster binding site, suggesting that these gene fragments encode for ARHDs. On the other hand, three gene types were closely related to previously described ARHDs: archetypical nahAc-like genes, phnAc-like genes as identified in Alcaligenes faecalis AFK2, and phnA1-like genes from marine PAH-degraders from the genus Cycloclasticus. Conclusion These results show the presence of hitherto unidentified ARHD genes in this sub-Antarctic marine environment exposed to anthropogenic contamination. This information

Flavins in Marine Sediments: A Potentially Ubiquitous Intermediary In Microbial Electron Transfer

NASA Astrophysics Data System (ADS)

Monteverde, D.; Sylvan, J. B.; Suffridge, C.; Berelson, W.; Sanudo-Wilhelmy, S. A.; Baronas, J. J.

2016-12-01

The flavins (riboflavin, flavin mononucleotide [FMN], flavin adenine dinucleotide [FA­­D]) are a class of organic compounds synthesized by organisms to assist in redox reactions. They represent the largest class of required coenzymes, rivaled only by iron in the number of unique enzymes they bind. In addition to internal use, cultured metal-reducing organisms such as Shewanella and Geobacter have been known to release flavins into the extracellular pool to aid in external electron transfer. So called "electron shuttles" can allow organisms to overcome unfavorable geochemical zonation by transferring electrons onto a relatively distant insoluble acceptor. Despite the extensive culture work, flavins have not been systematically measured in the environment. Here we present the first set of flavin profiles from the water column and pore waters of a marine environment. Samples were taken from San Pedro Basin, a 900 meter deep, silled basin, with high seasonal inputs of organic carbon, low bottom water oxygen concentrations, and laminated sediments - making it ideal to explore variations in sediment geochemical zonations. Dissolved flavin concentrations in the water column and pore waters collected from two cores were preconcentrated via solid phase extraction and measured via LC/MS. Flavin profiles are compared to a suite of geochemical parameters as well as sediment microbial 16s rRNA data. Preliminary results show that FMN is typically an order of magnitude higher concentration than riboflavin (800-300pM versus 100-50pM). Porewater concentrations were elevated over water column values for all analytes (ranging from 100-2000pM) and displayed an increasing trend with depth in both cores. This increasing trend correlated with a decrease in dissolved Fe (ranging from 160 µM in surface sediments to 65 µM at 40 cm) and shifts in microbial diversity from sediments shallower than 5 cm depth dominated by Delta- and Gammaproteobacteria to subsurface sediments dominated by

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing.

PubMed

Massana, Ramon; Gobet, Angélique; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Chambouvet, Aurélie; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Dolan, John R; Dunthorn, Micah; Edvardsen, Bente; Forn, Irene; Forster, Dominik; Guillou, Laure; Jaillon, Olivier; Kooistra, Wiebe H C F; Logares, Ramiro; Mahé, Frédéric; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C; Probert, Ian; Romac, Sarah; Richards, Thomas; Santini, Sébastien; Shalchian-Tabrizi, Kamran; Siano, Raffaele; Simon, Nathalie; Stoeck, Thorsten; Vaulot, Daniel; Zingone, Adriana; de Vargas, Colomban

2015-10-01

Although protists are critical components of marine ecosystems, they are still poorly characterized. Here we analysed the taxonomic diversity of planktonic and benthic protist communities collected in six distant European coastal sites. Environmental deoxyribonucleic acid (DNA) and ribonucleic acid (RNA) from three size fractions (pico-, nano- and micro/mesoplankton), as well as from dissolved DNA and surface sediments were used as templates for tag pyrosequencing of the V4 region of the 18S ribosomal DNA. Beta-diversity analyses split the protist community structure into three main clusters: picoplankton-nanoplankton-dissolved DNA, micro/mesoplankton and sediments. Within each cluster, protist communities from the same site and time clustered together, while communities from the same site but different seasons were unrelated. Both DNA and RNA-based surveys provided similar relative abundances for most class-level taxonomic groups. Yet, particular groups were overrepresented in one of the two templates, such as marine alveolates (MALV)-I and MALV-II that were much more abundant in DNA surveys. Overall, the groups displaying the highest relative contribution were Dinophyceae, Diatomea, Ciliophora and Acantharia. Also, well represented were Mamiellophyceae, Cryptomonadales, marine alveolates and marine stramenopiles in the picoplankton, and Monadofilosa and basal Fungi in sediments. Our extensive and systematic sequencing of geographically separated sites provides the most comprehensive molecular description of coastal marine protist diversity to date. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Relevance of carbon stocks of marine sediments for national greenhouse gas inventories of maritime nations.

PubMed

Avelar, Silvania; van der Voort, Tessa S; Eglinton, Timothy I

2017-12-01

Determining national carbon stocks is essential in the framework of ongoing climate change mitigation actions. Presently, assessment of carbon stocks in the context of greenhouse gas (GHG)-reporting on a nation-by-nation basis focuses on the terrestrial realm, i.e., carbon held in living plant biomass and soils, and on potential changes in these stocks in response to anthropogenic activities. However, while the ocean and underlying sediments store substantial quantities of carbon, this pool is presently not considered in the context of national inventories. The ongoing disturbances to both terrestrial and marine ecosystems as a consequence of food production, pollution, climate change and other factors, as well as alteration of linkages and C-exchange between continental and oceanic realms, highlight the need for a better understanding of the quantity and vulnerability of carbon stocks in both systems. We present a preliminary comparison of the stocks of organic carbon held in continental margin sediments within the Exclusive Economic Zone of maritime nations with those in their soils. Our study focuses on Namibia, where there is a wealth of marine sediment data, and draws comparisons with sediment data from two other countries with different characteristics, which are Pakistan and the United Kingdom. Results indicate that marine sediment carbon stocks in maritime nations can be similar in magnitude to those of soils. Therefore, if human activities in these areas are managed, carbon stocks in the oceanic realm-particularly over continental margins-could be considered as part of national GHG inventories. This study shows that marine sediment organic carbon stocks can be equal in size or exceed terrestrial carbon stocks of maritime nations. This provides motivation both for improved assessment of sedimentary carbon inventories and for reevaluation of the way that carbon stocks are assessed and valued. The latter carries potential implications for the management of

Environmental monitoring of alcohol sulfates and alcohol ethoxysulfates in marine sediments.

PubMed

Fernández-Ramos, Carolina; Ballesteros, Oscar; Zafra-Gómez, Alberto; Camino-Sánchez, Francisco Javier; Blanc, Rosario; Navalón, Alberto; Vílchez, José Luís

2014-03-01

The study describes the environmental monitoring of anionic surfactants-alcohol sulfates (AS) and alcohol ethoxysulfates (AES)-in marine sediments. Concentration values were obtained after pressurised liquid extraction (PLE) and liquid chromatography-tandem mass spectrometry analysis (LC-MS/MS). Samples were collected from a range of wastewater discharge points along the coast of the provinces of Huelva, Málaga, Granada and Almería. Urban, agricultural and industrial wastewaters are discharged at the selected 38 sampling sites. Principal component analysis was carried out in order to evaluate the distribution and behaviour of these compounds in these coastal environments. Evaluation of the data revealed that the behaviour and sources of AS and AES in marine sediments are different, and that the distribution of AES depends on the length of the alkyl chain, while the number of ethoxylated units is not relevant. Additionally, the 38 sampling sites can be grouped into only two types of outfalls according to their AS distribution. The concentration of compounds in sediment samples ranged from 7.52 to 13.50 mg kg(-1) for AS, from 3.04 to 10.68 mg kg(-1) for AES-C12Ex and from 3.83 to 11.56 mg kg(-1) for AES-C14Ex.

Polychlorinated naphthalenes (PCNs) in riverine and marine sediments of the Laizhou Bay area, North China.

PubMed

Pan, Xiaohui; Tang, Jianhui; Chen, Yingjun; Li, Jun; Zhang, Gan

2011-12-01

PCN congeners were analyzed in marine and riverine sediments of the Laizhou Bay area, North China. Concentrations of PCNs ranged from 0.12 to 5.1 ng g(-)(1) dry weight (dw) with a mean value of 1.1 ng g(-)(1) dw. The levels of PCNs varied largely, with industrial group approximately ten folds higher than those of the rural in riverine sediment. A strong impact by direct discharge from local factories was suggested. Similar compositional profiles were found within groups. High resemblance of compositional profiles between industrial samples and Halowax 1014 was observed. It was indicated that PCNs in riverine sediments were mainly from release of industrial usage, with additional contributions from industrial thermal process at certain sites. In marine sediments, it was suggested that PCNs along the coast of Laizhou Bay were mainly controlled by riverine input. While in the central bay, PCN distributions were possibly impacted by combined multiple factors. Copyright © 2011 Elsevier Ltd. All rights reserved.

Landslide-dammed paleolake perturbs marine sedimentation and drives genetic change in anadromous fish

PubMed Central

Mackey, Benjamin H.; Roering, Joshua J.; Lamb, Michael P.

2011-01-01

Large bedrock landslides have been shown to modulate rates and processes of river activity by forming dams, forcing upstream aggradation of water and sediment, and generating catastrophic outburst floods. Less apparent is the effect of large landslide dams on river ecosystems and marine sedimentation. Combining analyses of 1-m resolution topographic data (acquired via airborne laser mapping) and field investigation, we present evidence for a large, landslide-dammed paleolake along the Eel River, CA. The landslide mass initiated from a high-relief, resistant outcrop which failed catastrophically, blocking the Eel River with an approximately 130-m-tall dam. Support for the resulting 55-km-long, 1.3-km3 lake includes subtle shorelines cut into bounding terrain, deltas, and lacustrine sediments radiocarbon dated to 22.5 ka. The landslide provides an explanation for the recent genetic divergence of local anadromous (ocean-run) steelhead trout (Oncorhynchus mykiss) by blocking their migration route and causing gene flow between summer run and winter run reproductive ecotypes. Further, the dam arrested the prodigious flux of sediment down the Eel River; this cessation is recorded in marine sedimentary deposits as a 10-fold reduction in deposition rates of Eel-derived sediment and constitutes a rare example of a terrestrial event transmitted through the dispersal system and recorded offshore. PMID:22084068

Optimizing sample pretreatment for compound-specific stable carbon isotopic analysis of amino sugars in marine sediment

NASA Astrophysics Data System (ADS)

Zhu, R.; Lin, Y.-S.; Lipp, J. S.; Meador, T. B.; Hinrichs, K.-U.

2014-09-01

Amino sugars are quantitatively significant constituents of soil and marine sediment, but their sources and turnover in environmental samples remain poorly understood. The stable carbon isotopic composition of amino sugars can provide information on the lifestyles of their source organisms and can be monitored during incubations with labeled substrates to estimate the turnover rates of microbial populations. However, until now, such investigation has been carried out only with soil samples, partly because of the much lower abundance of amino sugars in marine environments. We therefore optimized a procedure for compound-specific isotopic analysis of amino sugars in marine sediment, employing gas chromatography-isotope ratio mass spectrometry. The whole procedure consisted of hydrolysis, neutralization, enrichment, and derivatization of amino sugars. Except for the derivatization step, the protocol introduced negligible isotopic fractionation, and the minimum requirement of amino sugar for isotopic analysis was 20 ng, i.e., equivalent to ~8 ng of amino sugar carbon. Compound-specific stable carbon isotopic analysis of amino sugars obtained from marine sediment extracts indicated that glucosamine and galactosamine were mainly derived from organic detritus, whereas muramic acid showed isotopic imprints from indigenous bacterial activities. The δ13C analysis of amino sugars provides a valuable addition to the biomarker-based characterization of microbial metabolism in the deep marine biosphere, which so far has been lipid oriented and biased towards the detection of archaeal signals.

Toxicity and photoactivation of PAH mixtures in marine sediment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Swartz, R.; Ferraro, S.; Lamberson, J.

1995-12-31

The toxicity and toxicological photoactivation of mixtures of sediment-associated fluoranthene, phenanthrene, pyrene, and acenaphthene were determined using standard 10 d sediment toxicity tests with the marine amphipod, Rhepoxynius abronius. The four PAHs were spiked into sediment in a concentration series of either single compounds or an equitoxic mixture. Spiked sediment was stored at 4 C for 28 d before testing. Toxicity tests were conducted under fluorescent lighting. Survivors after 10 d in PAH-contaminated sediment were exposed for 1 h to UV light in the absence of sediment and then tested for their ability to bury in clean sediment. The 10more » d LC50s for single PAHs were 3.3, 2.2, 2.8, and 2.3 mg/g oc for fluoranthene, phenanthrene, pyrene, and acenaphthene, respectively. These LC50s were used to calculate the sum of toxic units ({Sigma}TU) of the four PAHs in the equitoxic mixture treatments. The {Sigma}TU LC50 was then calculated for the mixture treatments. If the toxicological interaction of the four PAHs in the mixture was additive, the {Sigma}TU LC50 should equal 1.0. The observed {Sigma}TU LC50 in the mixture was 1.55, indicating the interaction was slightly less than additive. UV enhancement of toxic effects of individual PAHs was correctly predicted by photophysical properties, i.e. pyrene and fluoranthene were photoactivated and phenanthrene and acenaphthene were not. UV effects in the mixture of four PAHs can be explained by the photoactivation of pyrene and fluoranthene alone.« less

Gold-bearing fluvial and associated tidal marine sediments of Proterozoic age in the Mporokoso Basin, northern Zambia

NASA Astrophysics Data System (ADS)

Andrews-Speed, C. P.

1986-07-01

The structurally defined Mporokoso Basin contains up to 5000 m of continental and marine clastic sediments and minor silicic volcanics which together form the Mporokoso Group. These rocks overlie unconformably a basement of silicic-intermediate igneous rocks and accumulated within the interval 1830-1130 Ma. This sedimentological study was restricted to the eastern end of the basin and was part of an assessment of the potential for palaeoplacer gold in the Mporokoso Group. At the base of the Mporokoso Group, the Mbala Formation consists of 1000-1500 m of purple sandstones and conglomerates deposited in a braided-stream system overlain by 500-1000 m of mature quartz arenites deposited in a tidal marine setting. A general coarsening-upward trend exists within the fluvial sediments. Sandy, distal braided-stream facies passes upwards into more proximal conglomeratic facies. In proximal sections, poorly sorted conglomerates form the top of the coarsening-up sequence which is 500-700 m thick. The overlying fluvial sediments fine upwards. The tidal marine sandstones at the top of the Mbala Formation resulted from reworking of fluvial sediments during a marine transgression. Well-exposed sections with fluvial conglomerates were studied in detail. Individual conglomerate bodies form sheets extending for hundreds of metres downstream and at least one hundred metres across stream, with little sign of deep scouring or channelling. They are generally matrix-supported. The whole fluvial sequence is characterised by a paucity of mud or silt. These conglomerates were deposited by large velocity, sheet flows of water which transported a bed-load of pebbles and sand. Most fine material settling out from suspension was eroded by the next flow. The great lateral and vertical extent and the uniformity of the fluvial sediments suggest that the sediments accumulated over an unconfined alluvial plain and that the tectonic evolution of the source area was relatively continuous and not

Development of a toxicity identification evaluation procedure for characterizing metal toxicity in marine sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Burgess, R.M.; Cantwell, M.G.; Pelletier, M.C.

2000-04-01

A multiagency effort is underway to develop whole sediment toxicity identification evaluation (TIE) methods. Whole sediment TIE methods will be critical tools for characterizing toxicity at hazardous waste sites and in the conduct of environmental risk assessments. The research approach is based on the predominance of three classes of toxicants in sediments: ammonia, nonpolar organic chemicals, and metals. Here the authors describe a procedure for characterizing acute toxicity caused by metals in whole marine sediments. The procedure involves adding a chelating resin to sediments, resulting in the sequestration of bioavailable metal while not stressing testing organisms. Within the testing chambers,more » the presence of resin resulted in statistically significant reductions in the overlying and interstitial water concentrations of five metals (cadmium, copper, nickel, lead, and zinc) generally by factors of 40 and 200. Toxicity to both the amphipod Ampelisca abdita and mysid Americamysis bahia (formerly Mysidopsis bahia) of sediments spiked with the five metals was decreased by approximately a factor of four when resin was present. While very effective at reducing the concentrations and toxicity of metals, the resin has only minor ameliorative effects on the toxicity of ammonia and a representative nonpolar toxicant (Endosulfan). Resin and accumulated metal were easily isolated from the testing system following exposures allowing for the initiation of phase II TIE (identification) procedures. This procedure using the addition of a chelating resin provides an approach for determining the importance of metals to the toxicity of marine sediments. Work is continuing to validate the method with environmentally contaminated sediments.« less

Paleomagnetic Studies of Marine Sediments for Evaluation of Sedimentation Rates on the Mendeleev Ridge, Arctic Ocean

NASA Astrophysics Data System (ADS)

Elkina, D.

2014-12-01

Nowadays the Arctic Ocean is an area of higher scientific interest. Investigation of composition, genesis, sources and source areas of marine sediments is necessary for a gain of geological knowledge and geo-engineering development of the region. One should note that the dating issue in the Arctic Ocean is a challenge by itself. However, magnetostratigraphy can offer a powerful stratigraphic tool applying to marine sediments here. The 6-meters length core was retrieved from the Mendeleev Ridge in 2012 and subjected to paleomagnetic studies. The examined core was revealed to dominate by normal polarity up to 123 cm below seafloor (cmbsf) and assigned there to the Brunhes polarity chron of the geomagnetic field (0.78 Ma). Then prevalence of reverse polarity persists up to 394-397 cmbsf, assigned to Matuyama age, and short positive intervals are believed to be subchrons of normal polarity. Change from reverse to normal polarity at 394-397 cmbsf is considered as the Matuyama - Gauss (2.58 Ma) boundary and is traced up to 530-531 cmbsf including one short reversal. After this depth a drop back to reverse polarity is ascribed to the beginning of the Gilbert polarity chron (3.58 Ma). The resultant magnetostratigraphy is presented on Figure 1. The stepwise alternating field demagnetization and demagnetization by heating were performed to remove viscous overprints and then to define component magnetization directions. Spikes of natural remanent magnetization intensity and magnetic susceptibility are discovered near almost all assigned chron boundaries, and it may act as an independent factor for determination of polarity boundaries. Anisotropy of magnetic susceptibility is also considered in order to find out additional peculiarities of the sedimentation. The relative abundance of shallow inclinations at least implies the existence of secondary processes, which may have altered the paleomagnetic record. The mean sedimentation rates on the Mendeleev Ridge do not exceed 1

Using a forensic science approach to minimize environmental contamination and to identify microfibres in marine sediments.

PubMed

Woodall, Lucy C; Gwinnett, Claire; Packer, Margaret; Thompson, Richard C; Robinson, Laura F; Paterson, Gordon L J

2015-06-15

There is growing evidence of extensive pollution of the environment by microplastic, with microfibres representing a large proportion of the microplastics seen in marine sediments. Since microfibres are ubiquitous in the environment, present in the laboratory air and water, evaluating microplastic pollution is difficult. Incidental contamination is highly likely unless strict control measures are employed. Here we describe methods developed to minimize the amount of incidental post-sampling contamination when quantifying marine microfibre pollution. We show that our protocol, adapted from the field of forensic fibre examination, reduces fibre abundance by 90% and enables the quick screening of fibre populations. These methods therefore allow an accurate estimate of microplastics polluting marine sediments. In a case study from a series of samples collected on a research vessel, we use these methods to highlight the prevalence of microfibres as marine microplastics. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

A global survey of the distribution of free gas in marine sediments

NASA Astrophysics Data System (ADS)

Fleischer, Peter; Orsi, Tim; Richardson, Michael

2003-10-01

Following the work of Aubrey Anderson in the Gulf of Mexico, we have attempted to quantify the global distribution of free gas in shallow marine sediments, and have identified and indexed over one hundred documented cases in the scientific and engineering literature. Our survey confirms previous assumptions, primarily that gas bubbles are ubiquitous in the organic-rich muds of coastal waters and shallow adjacent seas. Acoustic turbidity as recorded during seismo-acoustic surveys is the most frequently cited evidence used to infer the presence of seafloor gas. Biogenic methane predominates within these shallow subbottom deposits. The survey also reveals significant imbalances in the geographic distribution of studies, which might be addressed in the future by accessing proprietary data or local studies with limited distribution. Because of their global prevalence, growing interest in gassy marine sediments is understandable as their presence has profound scientific, engineering and environmental implications.

The distribution of triclosan and methyl-triclosan in marine sediments of Barker Inlet, South Australia.

PubMed

Fernandes, Milena; Shareef, Ali; Kookana, Rai; Gaylard, Sam; Hoare, Sonja; Kildea, Tim

2011-04-01

In this work, we investigated the transport and burial of triclosan and its methylated derivative, in surface sediments near the mouth of Barker Inlet in South Australia. The most likely source of this commonly used bactericide to the area is a wastewater outfall discharging at the confluence of the inlet with marine waters. Triclosan was detected in all samples, at concentrations (5-27 μg kg(-1)) comparable to values found in other surface sediments under the influence of marine wastewater outfalls. Its dispersal was closely associated with fine and organic-rich fractions of the sediments. Methyl-triclosan was detected in approximately half of the samples at concentrations <11 μg kg(-1). The occurrence of this compound was linked to both wastewater discharges and biological methylation of the parent compound. Wastewater-borne methyl-triclosan had a smaller spatial footprint than triclosan and was mostly deposited in close proximity to the outfall. In situ methylation of triclosan likely occurs at deeper depositional sites, whereas the absence of methyl-triclosan from shallower sediments was potentially explained by photodegradation of the parent compound. Based on partition equilibrium, a concentration of triclosan in the order of 1 μg L(-1) was estimated in sediment porewaters, a value lower than the threshold reported for harmful effects to occur in the couple of species of marine phytoplankton investigated to date. Methyl-triclosan presents a greater potential for bioaccumulation than triclosan, but the implications of its occurrence to aquatic ecosystem health are difficult to predict given the lack of ecotoxicological data in the current literature.

Platinum-group elements (PGE) and Rhenium in Marine Sediments across the Cretaceous-Tertiary Boundary: Constraints on Re-PGE Transport in the Marine Environment

NASA Technical Reports Server (NTRS)

Lee, Cin-Ty Aeolus; Wasserburg, Gerald J.; Kyte, Frank T.

2003-01-01

The nature of Re-platinum-group element (PGE; Pt, Pd, Ir, Os, Ru) transport in the marine environment was investigated by means of marine sediments at and across the Cretaceous-Tertiary boundary (KTB) at two hemipelagic sites in Europe and two pelagic sites in the North and South Pacific. A traverse across the KTB in the South Pacific pelagic clay core found elevated levels of Re, Pt, Ir, Os, and Ru, each of which is approximately symmetrically distributed over a distance of approx. 1.8 m across the KTB. The Re-PGE abundance patterns are fractionated from chondritic relative abundances: Ru, Pt, Pd, and Re contents are slightly subchondritic relative to Ir, and Os is depleted by approx. 95% relative to chondritic Ir proportions. A similar depletion in Os (approx. 90%) was found in a sample of the pelagic KTB in the North Pacific, but it is enriched in Ru, Pt, Pd, and Re relative to Ir. The two hemipelagic KTB clays have near-chondritic abundance patterns. The approx. 1.8-m-wide Re-PGE peak in the pelagic South Pacific section cannot be reconciled with the fallout of a single impactor, indicating that postdepositional redistribution has occurred. The elemental profiles appear to fit diffusion profiles, although bioturbation could have also played a role. If diffusion had occurred over approx. 65 Ma, the effective diffusivities are approx. 10(exp -13)sq cm/s, much smaller than that of soluble cations in pore waters (approx. 10(exp -5) sq cm/s). The coupling of Re and the PGEs during redistribution indicates that postdepositional processes did not significantly fractionate their relative abundances. If redistribution was caused by diffusion, then the effective diffusivities are the same. Fractionation of Os from Ir during the KTB interval must therefore have occurred during aqueous transport in the marine environment. Distinctly subchondritic Os/Ir ratios throughout the Cenozoic in the South Pacific core further suggest that fractionation of Os from Ir in the marine

Marinobacter sp. from marine sediments produce highly stable surface-active agents for combatting marine oil spills.

PubMed

Raddadi, Noura; Giacomucci, Lucia; Totaro, Grazia; Fava, Fabio

2017-11-02

The application of chemical dispersants as a response to marine oil spills is raising concerns related to their potential toxicity also towards microbes involved in oil biodegradation. Hence, oil spills occurring under marine environments necessitate the application of biodispersants that are highly active, stable and effective under marine environment context. Biosurfactants from marine bacteria could be good candidates for the development of biodispersant formulations effective in marine environment. This study aimed at establishing a collection of marine bacteria able to produce surface-active compounds and evaluating the activity and stability of the produced compounds under conditions mimicking those found under marine environment context. A total of 43 different isolates were obtained from harbor sediments. Twenty-six of them produced mainly bioemulsifiers when glucose was used as carbon source and 16 were biosurfactant/bioemulsifiers producers after growth in the presence of soybean oil. Sequencing of 16S rRNA gene classified most isolates into the genus Marinobacter. The produced emulsions were shown to be stable up to 30 months monitoring period, in the presence of 300 g/l NaCl, at 4 °C and after high temperature treatment (120 °C for 20 min). The partially purified compounds obtained after growth on soybean oil-based media exhibited low toxicity towards V. fischeri and high capability to disperse crude oil on synthetic marine water. To the best of our knowledge, stability characterization of bioemulsifiers/biosurfactants from the non-pathogenic marine bacterium Marinobacter has not been previously reported. The produced compounds were shown to have potential for different applications including the environmental sector. Indeed, their high stability in the presence of high salt concentration and low temperature, conditions characterizing the marine environment, the capability to disperse crude oil and the low ecotoxicity makes them interesting for

Factors influencing organic carbon preservation in marine sediments

NASA Technical Reports Server (NTRS)

Canfield, D. E.

1994-01-01

The organic matter that escapes decomposition is buried and preserved in marine sediments, with much debate as to whether the amount depends on bottom-water O2 concentration. One group argues that decomposition is more efficient with O2, and hence, organic carbon will be preferentially oxidized in its presence, and preserved in its absence. Another group argues that the kinetics of organic matter decomposition are similar in the presence and absence of O2, and there should be no influence of O2 on preservation. A compilation of carbon preservation shows that both groups are right, depending on the circumstances of deposition. At high rates of deposition, such as near continental margins, little difference in preservation is found with varying bottom-water O2. It is important that most carbon in these sediments decomposes by anaerobic pathways regardless of bottom-water O2. Hence, little influence of bottom-water O2 on preservation would, in fact, be expected. As sedimentation rate drops, sediments deposited under oxygenated bottom water become progressively more aerobic, while euxinic sediments remain anaerobic. Under these circumstances, the relative efficiencies of aerobic and anaerobic decomposition could affect preservation. Indeed, enhanced preservation is observed in low-O2 and euxinic environments. To explore in detail the factors contributing to this enhanced carbon preservation, aspects of the biochemistries of the aerobic and anaerobic process are reviewed. Other potential influences on preservation are also explored. Finally, a new model for organic carbon decomposition, the "pseudo-G" model, is developed. This model couples the degradation of refractory organic matter to the overall metabolic activity of the sediment, and has consequences for carbon preservation due to the mixing together of labile and refractory organic matter by bioturbation.

V isotope composition in modern marine hydrothermal sediments

NASA Astrophysics Data System (ADS)

Wu, F.; Owens, J. D.; Nielsen, S.; German, C. R.; Rachel, M.

2017-12-01

in the ocean. The fingerprint of δ51V between oxic sediments and hydrothermal flux are significantly different and should be easily discernible in the geologic record. Consequently, our results show that the removal of V from hydrothermal sediments has an important influence on the marine V cycle, which needs to be considered for future modern and paleoclimatic studies.

Mineralogy, early marine diagenesis, and the chemistry of shallow-water carbonate sediments

NASA Astrophysics Data System (ADS)

Higgins, J. A.; Blättler, C. L.; Lundstrom, E. A.; Santiago-Ramos, D. P.; Akhtar, A. A.; Crüger Ahm, A.-S.; Bialik, O.; Holmden, C.; Bradbury, H.; Murray, S. T.; Swart, P. K.

2018-01-01

Shallow-water carbonate sediments constitute the bulk of sedimentary carbonates in the geologic record and are widely used archives of Earth's chemical and climatic history. One of the main limitations in interpreting the geochemistry of ancient carbonate sediments is the potential for post-depositional diagenetic alteration. In this study, we use paired measurements of calcium (44Ca/40Ca or δ44Ca) and magnesium (26Mg/24Mg or δ26Mg) isotope ratios in sedimentary carbonates and associated pore-fluids as a tool to understand the mineralogical and diagenetic history of Neogene shallow-water carbonate sediments from the Bahamas and southwest Australia. We find that the Ca and Mg isotopic composition of bulk carbonate sediments at these sites exhibits systematic stratigraphic variability that is related to both mineralogy and early marine diagenesis. The observed variability in bulk sediment Ca isotopes is best explained by changes in the extent and style of early marine diagenesis from one where the composition of the diagenetic carbonate mineral is determined by the chemistry of the fluid (fluid-buffered) to one where the composition of the diagenetic carbonate mineral is determined by the chemistry of the precursor sediment (sediment-buffered). Our results indicate that this process, together with variations in carbonate mineralogy (aragonite, calcite, and dolomite), plays a fundamental and underappreciated role in determining the regional and global stratigraphic expressions of geochemical tracers (δ13C, δ18O, major, minor, and trace elements) in shallow-water carbonate sediments in the geologic record. Our results also provide evidence that a large shallow-water carbonate sink that is enriched in 44Ca can explain the mismatch between the δ44/40Ca value of rivers and deep-sea carbonate sediments and call into question the hypothesis that the δ44/40Ca value of seawater depends on the mineralogy of primary carbonate precipitations (e.g. 'aragonite seas' and

Environmental risk assessment of triclosan and ibuprofen in marine sediments using individual and sub-individual endpoints.

PubMed

Pusceddu, F H; Choueri, R B; Pereira, C D S; Cortez, F S; Santos, D R A; Moreno, B B; Santos, A R; Rogero, J R; Cesar, A

2018-01-01

The guidelines for the Environmental Risk Assessment (ERA) of pharmaceuticals and personal care products (PPCP) recommend the use of standard ecotoxicity assays and the assessment of endpoints at the individual level to evaluate potential effects of PPCP on biota. However, effects at the sub-individual level can also affect the ecological fitness of marine organisms chronically exposed to PPCP. The aim of the current study was to evaluate the environmental risk of two PPCP in marine sediments: triclosan (TCS) and ibuprofen (IBU), using sub-individual and developmental endpoints. The environmental levels of TCS and IBU were quantified in marine sediments from the vicinities of the Santos submarine sewage outfall (Santos Bay, São Paulo, Brazil) at 15.14 and 49.0 ng g -1 , respectively. A battery (n = 3) of chronic bioassays (embryo-larval development) with a sea urchin (Lytechinus variegatus) and a bivalve (Perna perna) were performed using two exposure conditions: sediment-water interface and elutriates. Moreover, physiological stress through the Neutral Red Retention Time Assay (NRRT) was assessed in the estuarine bivalve Mytella charruana exposed to TCS and IBU spiked sediments. These compounds affected the development of L. variegatus and P. perna (75 ng g -1 for TCS and 15 ng g -1 for IBU), and caused a significant decrease in M. charruana lysosomal membrane stability at environmentally relevant concentrations (0.08 ng g -1 for TCS and 0.15 ng g -1 for IBU). Chemical and ecotoxicological data were integrated and the risk quotient estimated for TCS and IBU were higher than 1.0, indicating a high environmental risk of these compounds in sediments. These are the first data of sediment risk assessment of pharmaceuticals and personal care products of Latin America. In addition, the results suggest that the ERA based only on individual-level and standard toxicity tests may overlook other biological effects that can affect the health of marine organisms

Determination of alcohol sulfates and alcohol ethoxysulfates in marine and river sediments using liquid chromatography-tandem mass spectrometry.

PubMed

Fernández-Ramos, C; Ballesteros, O; Blanc, R; Zafra-Gómez, A; Camino-Sánchez, F J; Navalón, A; Vílchez, J L

2013-10-15

A novel and successful method has been developed for the identification and quantification of alcohol sulfates (AS) homologues and alcohol ethoxysulfates (AES) ethoxymers in marine and river sediment samples. The method involves the extraction of 5.00 g of dry sample with methanol using pressurized liquid extraction (PLE) and liquid chromatography-tandem mass spectrometry (LC-MS/MS). 2-Octylbenzene sulfonic acid sodium salt (2ØC8-LAS) was used as internal standard. The analytical methods were applied to marine sediments collected from the coast of Almeria (South-east Spain) and river sediments collected from the Monachil river (Granada, South-east Spain). For AS homologues, the found limits of detection were 0.04-0.08 μg g(-1) for marine and river sediments. For AES ethoxymers, the found limits of detection were 0.03-0.09 μg g(-1) and 0.06-0.22 μg g(-1) for marine and river sediments, respectively. The highest concentrations of AS and AES were found in river sediment samples. Significant differences were also observed between the behavior of short-chain compounds (C12) and long-chain compounds (C14 to C18). The influence of the physic-chemical properties of water on the occurrence of these compounds was also evaluated, and differences between long- and short-chain compounds were also observed. Additionally, principal components analyses were carried out in order to study the relationship between variables and to evaluate the sources of data variability and behavior patterns. Finally, important conclusions were drawn regarding the environmental behavior of AS and AES. Copyright © 2013 Elsevier B.V. All rights reserved.

Sources and fate of microplastics in marine and beach sediments of the Southern Baltic Sea-a preliminary study.

PubMed

Graca, Bożena; Szewc, Karolina; Zakrzewska, Danuta; Dołęga, Anna; Szczerbowska-Boruchowska, Magdalena

2017-03-01

Microplastics' (particles size ≤5 mm) sources and fate in marine bottom and beach sediments of the brackish are strongly polluted Baltic Sea have been investigated. Microplastics were extracted using sodium chloride (1.2 g cm -3 ). Their qualitative identification was conducted using micro-Fourier-transform infrared spectroscopy (μFT-IR). Concentration of microplastics varied from 25 particles kg -1 d.w. at the open sea beach to 53 particles kg -1  d.w. at beaches of strongly urbanized bay. In bottom sediments, microplastics concentration was visibly lower compared to beach sediments (0-27 particles kg -1  d.w.) and decreased from the shore to the open, deep-sea regions. The most frequent microplastics dimensions ranged from 0.1 to 2.0 mm, and transparent fibers were predominant. Polyester, which is a popular fabrics component, was the most common type of microplastic in both marine bottom (50%) and beach sediments (27%). Additionally, poly(vinyl acetate) used in shipbuilding as well as poly(ethylene-propylene) used for packaging were numerous in marine bottom (25% of all polymers) and beach sediments (18% of all polymers). Polymer density seems to be an important factor influencing microplastics circulation. Low density plastic debris probably recirculates between beach sediments and seawater in a greater extent than higher density debris. Therefore, their deposition is potentially limited and physical degradation is favored. Consequently, low density microplastics concentration may be underestimated using current methods due to too small size of the debris. This influences also the findings of qualitative research of microplastics which provide the basis for conclusions about the sources of microplastics in the marine environment.

Recent sediment remolding on a deep shelf, Ross Sea: implications for radiocarbon dating of Antarctic marine sediments

NASA Astrophysics Data System (ADS)

Domack, Eugene W.; Taviani, Marco; Rodriguez, Anthonio

1999-11-01

Coarse, bioclastic rich sands have been widely reported from the banks of the Antarctic continental shelf but their origin is still poorly known. We report on a suite of coarse sediments recovered from the top of the Mawson Bank in the northwestern Ross Sea. Radiocarbon ages of biogenic calcite, for modern and apparently late Pleistocene deposits, range from 1085±45 to 20,895±250 yr B.P.. Discovery of soft tissue (Ascidian) preserved as an incrustation on a pebble at 2 m depth indicates aggregation of the sediment within several months or a year of core recovery. Radiocarbon ages of acid insoluble organic matter (aiom) are less than those of the foraminifera calcite. The aiom ages are also reversed in sequence, indicating reworking of the sediment during deposition. These observations and a review of recently published literature suggest that much of the bank top sediment in Antarctica is presently undergoing remobilization, under the influence of strong currents and/or icebergs even under interglacical (high-stand) sea levels. These observations point out the need for careful, integrated studies on high latitude marine sediment cores before resultant "ages" alone are used as the foundation for paleoglacial reconstructions.

In situ lubricant degradation in Antarctic marine sediments. 1. Short-term changes.

PubMed

Thompson, Belinda A W; Davies, Noel W; Goldsworthy, Paul M; Riddle, Martin J; Snape, Ian; Stark, Jonathan S

2006-02-01

A large-scale, in situ experiment was set up near the Bailey Peninsula area (Casey Station, East Antarctica) to monitor the natural attenuation of synthetic lubricants in marine sediments over five years. Here, we report the short-term changes after 5 and 56 weeks. The lubricants tested were an unused and used Mobil lubricant (0W/40; Exxon Mobil, Irving, TX, USA) and a biodegradable alternative (0W/20; Fuchs Lubricants, Harvey, IL, USA). Clean sediment was collected, contaminated with the lubricants, and deployed by divers onto the seabed in a randomized block design. The sampled sediments were analyzed by gas chromatography-flame-ionization detector and gas chromatography-mass spectrometry with selective ion monitoring. The base fluid of all lubricant treatments did not decrease significantly after 56 weeks in situ. Alkanoate esters of 1,1,1-tris(hydroxymethyl)propane in the biodegradable and unused lubricants were degraded extensively in situ; however, these esters constituted only a minor proportion of the lubricant volume. The additives, alkylated naphthalenes and substituted diphenylamines, were fairly resistant to degradation, which is of environmental concern because of their toxicity. The biodegradable lubricant did not break down to recognized biodegradable thresholds and, as such, should not be classified as biodegradable under Antarctic marine conditions. A separate experiment was conducted to determine the influence of sediment preparation and deployment on compound ratios within the lubricants, and we found that preparation and deployment of the contaminated sediments had only a minor effect on compound recovery. Further monitoring of this in situ experiment will provide much needed information about the long-term natural attenuation of lubricants.

Phospholipid-derived fatty acids and quinones as markers for bacterial biomass and community structure in marine sediments.

PubMed

Kunihiro, Tadao; Veuger, Bart; Vasquez-Cardenas, Diana; Pozzato, Lara; Le Guitton, Marie; Moriya, Kazuyoshi; Kuwae, Michinobu; Omori, Koji; Boschker, Henricus T S; van Oevelen, Dick

2014-01-01

Phospholipid-derived fatty acids (PLFA) and respiratory quinones (RQ) are microbial compounds that have been utilized as biomarkers to quantify bacterial biomass and to characterize microbial community structure in sediments, waters, and soils. While PLFAs have been widely used as quantitative bacterial biomarkers in marine sediments, applications of quinone analysis in marine sediments are very limited. In this study, we investigated the relation between both groups of bacterial biomarkers in a broad range of marine sediments from the intertidal zone to the deep sea. We found a good log-log correlation between concentrations of bacterial PLFA and RQ over several orders of magnitude. This relationship is probably due to metabolic variation in quinone concentrations in bacterial cells in different environments, whereas PLFA concentrations are relatively stable under different conditions. We also found a good agreement in the community structure classifications based on the bacterial PLFAs and RQs. These results strengthen the application of both compounds as quantitative bacterial biomarkers. Moreover, the bacterial PLFA- and RQ profiles revealed a comparable dissimilarity pattern of the sampled sediments, but with a higher level of dissimilarity for the RQs. This means that the quinone method has a higher resolution for resolving differences in bacterial community composition. Combining PLFA and quinone analysis as a complementary method is a good strategy to yield higher resolving power in bacterial community structure.

Microbial processes and organic priority substances in marine coastal sediments (Adriatic Sea, Italy)

NASA Astrophysics Data System (ADS)

Zoppini, Annamaria; Ademollo, Nicoletta; Amalfitano, Stefano; Dellisanti, Walter; Lungarini, Silvia; Miserocchi, Stefano; Patrolecco, Luisa; Langone, Leonardo

2015-04-01

PERSEUS EU FP7 Project aims to identify the interacting patterns of natural and human-derived pressures to assess their impact on marine ecosystems and, using the objectives and principles of the Marine Strategy Framework Directive (MSFD) as a vehicle, to design an effective and innovative research governance framework based on sound scientific knowledge. In the frame of this Project (subtask 1.3.3 ADREX: Adriatic and Ionian Seas Experiment), monitoring surveys were conducted in the Adriatic Sea (Italy) in order to study the variation of structural and functional characteristics of native bacterial communities and the occurrence of selected classes of organic priority substances in sediments. The study area represents a good natural laboratory sensitive to climate variability and human pressure, owing to the semi-enclosed nature of the Adriatic Sea and to the increasing trend of human activities in the coastal regions. During the cruise ADRI-13 (November 2013) and ADRI-14 (October 2014) we sampled several coastal sites from the mouth of the Po River to the Otranto strait. Surface sediments were collected in all areas, while sediment cores were sampled in selected sites. Microbes associated with marine sediments play an important role in the C-flux being responsible for the transformation of organic detritus (autochthonous and allochthonous) into biomass. The sediment bacterial abundance was determined by epifluorescence microscopy and the rate of bacterial carbon production by measuring the 3H-leucine uptake rates. The community respiration rate was estimated by the measurement of the electron transport system (ETS) activity. The sediment contamination level was determined by measuring the concentration of contaminants included in the list of organic priority substances: PAHs, bisphenol A (BPA), alkylphenols (APs). The extraction/clean-up of PAHs, BPA and APs was performed by ultrasonic bath with the appropriate solvents, followed by analytical determination with

Heterotrophic euglenids from marine sediments of cape tribulation, tropical australia

NASA Astrophysics Data System (ADS)

Je Lee, Won

2006-06-01

This paper presents new data on free-living heterotrophic euglenids (Euglenozoa, Protista) that occurred in the marine sediments at Cape Tribulation, Queensland, Australia. Twenty-nine species from 9 genera are described with uninterpreted records based on light microscopy, including one new taxon: Notosolenus capetribulationi n. sp. There was little evidence for endemism because the majority of heterotrophic euglenid species encountered here have been reported or were found from other habitats.

Three manganese oxide-rich marine sediments harbor similar communities of acetate-oxidizing manganese-reducing bacteria

PubMed Central

Vandieken, Verona; Pester, Michael; Finke, Niko; Hyun, Jung-Ho; Friedrich, Michael W; Loy, Alexander; Thamdrup, Bo

2012-01-01

Dissimilatory manganese reduction dominates anaerobic carbon oxidation in marine sediments with high manganese oxide concentrations, but the microorganisms responsible for this process are largely unknown. In this study, the acetate-utilizing manganese-reducing microbiota in geographically well-separated, manganese oxide-rich sediments from Gullmar Fjord (Sweden), Skagerrak (Norway) and Ulleung Basin (Korea) were analyzed by 16S rRNA-stable isotope probing (SIP). Manganese reduction was the prevailing terminal electron-accepting process in anoxic incubations of surface sediments, and even the addition of acetate stimulated neither iron nor sulfate reduction. The three geographically distinct sediments harbored surprisingly similar communities of acetate-utilizing manganese-reducing bacteria: 16S rRNA of members of the genera Colwellia and Arcobacter and of novel genera within the Oceanospirillaceae and Alteromonadales were detected in heavy RNA-SIP fractions from these three sediments. Most probable number (MPN) analysis yielded up to 106 acetate-utilizing manganese-reducing cells cm−3 in Gullmar Fjord sediment. A 16S rRNA gene clone library that was established from the highest MPN dilutions was dominated by sequences of Colwellia and Arcobacter species and members of the Oceanospirillaceae, supporting the obtained RNA-SIP results. In conclusion, these findings strongly suggest that (i) acetate-dependent manganese reduction in manganese oxide-rich sediments is catalyzed by members of taxa (Arcobacter, Colwellia and Oceanospirillaceae) previously not known to possess this physiological function, (ii) similar acetate-utilizing manganese reducers thrive in geographically distinct regions and (iii) the identified manganese reducers differ greatly from the extensively explored iron reducers in marine sediments. PMID:22572639

Three manganese oxide-rich marine sediments harbor similar communities of acetate-oxidizing manganese-reducing bacteria.

PubMed

Vandieken, Verona; Pester, Michael; Finke, Niko; Hyun, Jung-Ho; Friedrich, Michael W; Loy, Alexander; Thamdrup, Bo

2012-11-01

Dissimilatory manganese reduction dominates anaerobic carbon oxidation in marine sediments with high manganese oxide concentrations, but the microorganisms responsible for this process are largely unknown. In this study, the acetate-utilizing manganese-reducing microbiota in geographically well-separated, manganese oxide-rich sediments from Gullmar Fjord (Sweden), Skagerrak (Norway) and Ulleung Basin (Korea) were analyzed by 16S rRNA-stable isotope probing (SIP). Manganese reduction was the prevailing terminal electron-accepting process in anoxic incubations of surface sediments, and even the addition of acetate stimulated neither iron nor sulfate reduction. The three geographically distinct sediments harbored surprisingly similar communities of acetate-utilizing manganese-reducing bacteria: 16S rRNA of members of the genera Colwellia and Arcobacter and of novel genera within the Oceanospirillaceae and Alteromonadales were detected in heavy RNA-SIP fractions from these three sediments. Most probable number (MPN) analysis yielded up to 10(6) acetate-utilizing manganese-reducing cells cm(-3) in Gullmar Fjord sediment. A 16S rRNA gene clone library that was established from the highest MPN dilutions was dominated by sequences of Colwellia and Arcobacter species and members of the Oceanospirillaceae, supporting the obtained RNA-SIP results. In conclusion, these findings strongly suggest that (i) acetate-dependent manganese reduction in manganese oxide-rich sediments is catalyzed by members of taxa (Arcobacter, Colwellia and Oceanospirillaceae) previously not known to possess this physiological function, (ii) similar acetate-utilizing manganese reducers thrive in geographically distinct regions and (iii) the identified manganese reducers differ greatly from the extensively explored iron reducers in marine sediments.

Water storage in marine sediment and implications for inferences of past global ice volume

NASA Astrophysics Data System (ADS)

Ferrier, K.; Li, Q.; Pico, T.; Austermann, J.

2017-12-01

Changes in past sea level are of wide interest because they provide information on the sensitivity of ice sheets to climate change, and thus inform predictions of future sea-level change. Sea level changes are influenced by many processes, including the storage of water in sedimentary pore space. Here we use a recent extension of gravitationally self-consistent sea-level models to explore the effects of marine sedimentary water storage on the global seawater balance and inferences of past global ice volume. Our analysis suggests that sedimentary water storage can be a significant component of the global seawater budget over the 105-year timescales associated with glacial-interglacial cycles, and an even larger component over longer timescales. Estimates of global sediment fluxes to the oceans suggest that neglecting marine sedimentary water storage may produce meter-scale errors in estimates of peak global mean sea level equivalent (GMSL) during the Last Interglacial (LIG). These calculations show that marine sedimentary water storage can be a significant contributor to the overall effects of sediment redistribution on sea-level change, and that neglecting sedimentary water storage can lead to substantial errors in inferences of global ice volume at past interglacials. This highlights the importance of accounting for the influences of sediment fluxes and sedimentary water storage on sea-level change over glacial-interglacial timescales.

Gamma-emitting radionuclides in the shallow marine sediments off the Sindh coast, Arabian Sea.

PubMed

Akram, M; Qureshi, Riffat M; Ahmad, Nasir; Solaija, Tariq Jamal

2006-01-01

Determination of gamma emitting radionuclides in shallow marine sediments off the Sindh coast has been carried out using a gamma spectrometry technique. The activity concentration measured in various sediment samples off the Sindh coast has been found to vary from 15.93 +/- 5.22 to 30.53 +/- 4.70 Bq kg(-1) for 226Ra, from 11.72 +/- 1.22 to 33.94 +/- 1.86 Bq kg(-1) for 228Ra and from 295.22 +/- 32.83 to 748.47 +/- 28.75 Bq kg(-1) for 40K. The calculated mean values of radium equivalent activity, absorbed dose rate and effective dose are 98 Bq kg(-1), 49 nGy h(-1) and 0.06 mSv y(-1), respectively. No artificial radionuclide was detected in the samples measured from the study area. As no data on radioactivity of the coastal environment of Pakistan are available, the data presented here will serve as baseline information on radionuclide concentration in shallow sea sediments off the Sindh coast. The data will also be useful for tracking pollution inventories from unusual radiological events (if any) in the territorial waters of the study area. Further, the information presented will contribute to modelling of a regional radioactivity database from the perspectives of the International Atomic Energy Agency's Asia-Pacific Marine Radioactivity Database and Global Marine Radioactivity Database.

Molybdenum Accumulation in Marine Sediments as an Indicator of Hypoxic Water Conditions (NACAETAC)

EPA Science Inventory

Direct monitoring of hypoxic water column conditions over large spatial and temporal extents is difficult due to the substantial logistical and financial investment required. Recent studies have indicated that concentrations of molybdenum (Mo) in marine sediments may serve as a u...

High abundance of JS-1- and Chloroflexi-related Bacteria in deeply buried marine sediments revealed by quantitative, real-time PCR.

PubMed

Blazejak, Anna; Schippers, Axel

2010-05-01

Sequences of members of the bacterial candidate division JS-1 and the classes Anaerolineae and Caldilineae of the phylum Chloroflexi are frequently found in 16S rRNA gene clone libraries obtained from marine sediments. Using a newly designed quantitative, real-time PCR assay, these bacterial groups were jointly quantified in samples from near-surface and deeply buried marine sediments from the Peru margin, the Black Sea, and a forearc basin off the island of Sumatra. In near-surface sediments, sequences of the JS-1 as well as Anaerolineae- and Caldilineae-related Bacteria were quantified with significantly lower 16S rRNA gene copy numbers than the sequences of total Bacteria. In contrast, in deeply buried sediments below approximately 1 m depth, similar quantities of the 16S rRNA gene copies of these specific groups and Bacteria were found. This finding indicates that JS-1 and Anaerolineae- and Caldilineae-related Bacteria might dominate the bacterial community in deeply buried marine sediments and thus seem to play an important ecological role in the deep biosphere.

Effect of physical sediments reworking on hydrocarbon degradation and bacterial community structure in marine coastal sediments.

PubMed

Duran, Robert; Bonin, Patricia; Jezequel, Ronan; Dubosc, Karine; Gassie, Claire; Terrisse, Fanny; Abella, Justine; Cagnon, Christine; Militon, Cecile; Michotey, Valérie; Gilbert, Franck; Cuny, Philippe; Cravo-Laureau, Cristiana

2015-10-01

The present study aimed to examine whether the physical reworking of sediments by harrowing would be suitable for favouring the hydrocarbon degradation in coastal marine sediments. Mudflat sediments were maintained in mesocosms under conditions as closer as possible to those prevailing in natural environments with tidal cycles. Sediments were contaminated with Ural blend crude oil, and in half of them, harrowing treatment was applied in order to mimic physical reworking of surface sediments. Hydrocarbon distribution within the sediment and its removal was followed during 286 days. The harrowing treatment allowed hydrocarbon compounds to penetrate the first 6 cm of the sediments, and biodegradation indexes (such as n-C18/phytane) indicated that biodegradation started 90 days before that observed in untreated control mesocosms. However, the harrowing treatment had a severe impact on benthic organisms reducing drastically the macrofaunal abundance and diversity. In the harrowing-treated mesocosms, the bacterial abundance, determined by 16S rRNA gene Q-PCR, was slightly increased; and terminal restriction fragment length polymorphism (T-RFLP) analyses of 16S rRNA genes showed distinct and specific bacterial community structure. Co-occurrence network and canonical correspondence analyses (CCA) based on T-RFLP data indicated the main correlations between bacterial operational taxonomic units (OTUs) as well as the associations between OTUs and hydrocarbon compound contents further supported by clustered correlation (ClusCor) analysis. The analyses highlighted the OTUs constituting the network structural bases involved in hydrocarbon degradation. Negative correlations indicated the possible shifts in bacterial communities that occurred during the ecological succession.

Geochemistry of volcanogenic clayey marine sediments from the Hazar-Maden Basin (Eastern Turkey)

NASA Astrophysics Data System (ADS)

Akkoca, Dicle Bal; Kürüm, Sevcan; Huff, Warren D.

2013-12-01

The Hazar-Madeıı Basin sediments were deposited along the southern branch of the Neotethys Ocean margin during Late Maastrichtian-Middle Eocene times. X-ray powder diffraction (XRD), ICP-AES, ICP-MS and scanning electron microscopy (SEM) were performed on samples of the Upper Maastrichtian-Middle Eocene Hazar Group and the Middle Eocene Maden Complex from the Hazar-Maden Basin to investigate the main effects of depositional envi- ronmental parameters in three sections belonging to deeper marine (slope), proximal arc volcanic (Mastarhill and Yukaribag sections) and shallow platform marine (Sebken section) settings. Marine sediments contain clay minerals (smectite, smectite/chlorite, chlorite, illite, interstratified illite/smectite, illite/chlorite, palygorskite), clinoptilolite, quartz, feldspar, calcite, dolomite, opal-CT and hematite. The clays are dominated by iron-rich smectites. La, Zr and Th concentrations are high in the shallow marginal Sebken section where the terrestrial detrital contribution is significant, while Sc and Co are more dominant in the deeper marine (slope) Yukaribag section, which is represented by basic-type volcanism and a higher contribution of hydrothermal phases. In a chondrite-normalized REE diagram, the negative Eu anomaly in samples from Sebken, the section which was deposited in a shallow marine environment, is less significant than that of the other two sections indicating the presence of a high terrestrial contribution in that part of the basin. A decrease in LREE v/HREEiV and Lajv/Ybv, LaiV/Sin v ratios from Sebken to Mastarhill and the Yukaribag sections indi- cates deepening of the basin and an increasing contribution of volcanism in that direction.

Manganese cycles in Arctic marine sediments - Climate signals or diagenesis?

NASA Astrophysics Data System (ADS)

März, C.; Stratmann, A.; Eckert, S.; Schnetger, B.; Brumsack, H.-J.

2009-04-01

In comparison to sediments from other parts of the world ocean, the inorganic geochemistry of Arctic Ocean sediments is poorly investigated. However, marked light to dark brown layers are well-known features of Quaternary Arctic sediments, and have been related to variable Mn contents. Brown layers represent intervals relatively rich in Mn (often > 1 wt.%), while yellowish-greyish intervals contain less Mn. As these brown layers are widespread in pelagic Quaternary deposits of the Arctic Ocean, there are attempts to use them as stratigraphic, age-equivalent marker horizons that are genetically related to global climate changes (e.g. Jakobsson et al., 2000; Löwemark et al., 2008). In the Arctic Ocean, other conventional stratigraphic methods often fail, therefore the use of Mn-rich layers as a chemostratigraphic tool seems to be a promising approach. However, several inorganic-geochemical and modelling studies of Mn cycles in the Arctic as well as in other parts of the world ocean have shown that multiple Mn layers in marine sediments can be created by non-steady state diagenetic processes, i.e. secondary Mn redistribution in the sediment due to microbially mediated dissolution-reprecipitation reactions (e.g. Li et al., 1969; Gobeil et al., 1997; Burdige, 2006; Katsev et al., 2006). Such biogeochemical processes can lead to rapid migration or fixation of redox boundaries in the sediment, resulting in the formation or (partial) destruction of metal-rich layers several thousands of years after sediment deposition. As this clearly would alter primary paleoenvironmental signals recorded in the sediments, we see an urgent need to unravel the real stratigraphic potential of Arctic Mn cycles before they are readily established as standard tools. For this purpose, we are studying Mn cycles in Arctic Ocean sediments recovered during R/V Polarstern expedition ARK XXIII/3 on the Mendeleev Ridge (East Siberian Sea). First results of pore water and sediment composition

Distribution and sources of organic matter in surface marine sediments across the North American Arctic margin

NASA Astrophysics Data System (ADS)

Goñi, Miguel A.; O'Connor, Alison E.; Kuzyk, Zou Zou; Yunker, Mark B.; Gobeil, Charles; Macdonald, Robie W.

2013-09-01

As part of the International Polar Year research program, we conducted a survey of surface marine sediments from box cores along a section extending from the Bering Sea to Davis Strait via the Canadian Archipelago. We used bulk elemental and isotopic compositions, together with biomarkers and principal components analysis, to elucidate the distribution of marine and terrestrial organic matter in different regions of the North American Arctic margin. Marked regional contrasts were observed in organic carbon loadings, with the highest values (≥1 mg C m-2 sediment) found in sites along Barrow Canyon and the Chukchi and Bering shelves, all of which were characterized by sediments with low oxygen exposure, as inferred from thin layers (<2 cm) of Mn oxihydroxides. We found strong regional differences in inorganic carbon concentrations, with sites from the Canadian Archipelago and Lancaster Sound displaying elevated values (2-7 wt %) and highly depleted 14C compositions consistent with inputs from bedrock carbonates. Organic carbon:nitrogen ratios, stable carbon isotopes, and terrigenous organic biomarkers (lignin phenols and cutin acids) all indicate marked regional differences in the proportions of marine and terrigenous organic matter present in surface sediments. Regions such as Barrow Canyon and the Mackenzie River shelf were characterized by the highest contributions of land-derived organic matter, with compositional characteristics that suggested distinct sources and provenance. In contrast, sediments from the Canadian Archipelago and Davis Strait had the smallest contributions of terrigenous organic matter and the lowest organic carbon loadings indicative of a high degree of post-depositional oxidation.

Acoustics of marine sediment under compaction: binary grain-size model and viscoelastic extension of Biot's theory.

PubMed

Leurer, Klaus C; Brown, Colin

2008-04-01

This paper presents a model of acoustic wave propagation in unconsolidated marine sediment, including compaction, using a concept of a simplified sediment structure, modeled as a binary grain-size sphere pack. Compressional- and shear-wave velocities and attenuation follow from a combination of Biot's model, used as the general framework, and two viscoelastic extensions resulting in complex grain and frame moduli, respectively. An effective-grain model accounts for the viscoelasticity arising from local fluid flow in expandable clay minerals in clay-bearing sediments. A viscoelastic-contact model describes local fluid flow at the grain contacts. Porosity, density, and the structural Biot parameters (permeability, pore size, structure factor) as a function of pressure follow from the binary model, so that the remaining input parameters to the acoustic model consist solely of the mass fractions and the known mechanical properties of each constituent (e.g., carbonates, sand, clay, and expandable clay) of the sediment, effective pressure, or depth, and the environmental parameters (water depth, salinity, temperature). Velocity and attenuation as a function of pressure from the model are in good agreement with data on coarse- and fine-grained unconsolidated marine sediments.

SHORT-EXPOSURE, SUBLETHAL, SEDIMENT TOXICITY TEST USING THE MARINE BIVALVE MULINIA LATERALIS: STATISTICAL DESIGN AND COMPARATIVE SENSITIVITY

EPA Science Inventory

Over the last 10 years a great deal of research effort has concentrated on determining the effects of contaminated sediments on aquatic organisms. or marine systems, this effort has emphasized acute sediment toxicity tests using amphipods, although a variety of other end points a...

Diversity and distribution of fungal communities in the marine sediments of Kongsfjorden, Svalbard (High Arctic)

NASA Astrophysics Data System (ADS)

Zhang, Tao; Fei Wang, Neng; Qin Zhang, Yu; Yu Liu, Hong; Yan Yu, Li

2015-10-01

This study assessed the diversity and distribution of fungal communities in eight marine sediments of Kongsfjorden (Svalbard, High Arctic) using 454 pyrosequencing with fungal-specific primers targeting the internal transcribed spacer (ITS) region of the ribosomal rRNA gene. Sedimentary fungal communities showed high diversity with 42,219 reads belonging to 113 operational taxonomic units (OTUs). Of these OTUs, 62 belonged to the Ascomycota, 26 to Basidiomycota, 2 to Chytridiomycota, 1 to Zygomycota, 1 to Glomeromycota, and 21 to unknown fungi. The major known orders included Hypocreales and Saccharomycetales. The common fungal genera were Pichia, Fusarium, Alternaria, and Malassezia. Interestingly, most fungi occurring in these Arctic sediments may originate from the terrestrial habitats and different basins in Kongsfjorden (i.e., inner basin, central basin, and outer basin) harbor different sedimentary fungal communities. These results suggest the existence of diverse fungal communities in the Arctic marine sediments, which may serve as a useful community model for further ecological and evolutionary study of fungi in the Arctic.

Salinity shifts in marine sediment: Importance of number of fluctuation rather than their intensities on bacterial denitrifying community.

PubMed

Zaghmouri, Imen; Michotey, Valerie D; Armougom, Fabrice; Guasco, Sophie; Bonin, Patricia C

2018-05-01

The sensitivity of denitrifying community to salinity fluctuations was studied in microcosms filled with marine coastal sediments subjected to different salinity disturbances over time (sediment under frequent salinity changes vs sediment with "stable" salinity pattern). Upon short-term salinity shift, denitrification rate and denitrifiers abundance showed high resistance whatever the sediment origin is. Denitrifying community adapted to frequent salinity changes showed high resistance when salinity increases, with a dynamic nosZ relative expression level. Marine sediment denitrifying community, characterized by more stable pattern, was less resistant when salinity decreases. However, after two successive variations of salinity, it shifted toward the characteristic community of fluctuating conditions, with larger proportion of Pseudomonas-nosZ, exhibiting an increase of nosZ relative expression level. The impact of long-term salinity variation upon bacterial community was confirmed at ribosomal level with a higher percentage of Pseudomonas and lower proportion of nosZII clade genera. Copyright © 2018 Elsevier Ltd. All rights reserved.

Sources and distributions of branched and isoprenoid tetraether lipids on the Amazon shelf and fan: Implications for the use of GDGT-based proxies in marine sediments

NASA Astrophysics Data System (ADS)

Zell, Claudia; Kim, Jung-Hyun; Hollander, David; Lorenzoni, Laura; Baker, Paul; Silva, Cleverson Guizan; Nittrouer, Charles; Sinninghe Damsté, Jaap S.

2014-08-01

Branched glycerol dialkyl glycerol tetraethers (brGDGTs) in river fan sediments have been used successfully to reconstruct mean annual air temperature (MAAT) and soil pH of the Congo River drainage basin. However, in a previous study of Amazon deep-sea fan sediments the reconstructed MAATs were ca. 10 °C colder than the actual MAAT of the Amazon basin. In this study we investigated this apparent offset, by comparing the concentrations and distributions of brGDGTs in Amazon River suspended particulate matter (SPM) and sediments to those in marine SPM and surface sediments. The riverine brGDGT input was evident from the elevated brGDGT concentrations in marine SPM and surface sediments close to the river mouth. The distributions of brGDGTs in marine SPM and sediments varied widely, but generally showed a higher relative abundance of methylated and cyclic brGDGTs than those in the river. Since this difference in brGDGT distribution was also found in intact polar lipid (IPL)-derived brGDGTs, which were more recently produced, the change in the marine brGDGT distribution was most likely due to marine in situ production. Consequently, the MAATs calculated based on the methylation of branched tetraethers (MBT) and the cyclisation of branched tetraethers (CBT) were lower and the CBT-derived pH values were higher than those of the Amazon basin. However, SPM and sediments from stations close to the river mouth still showed MBT/CBT values that were similar to those of the river. Therefore, we recommend caution when applying the MBT/CBT proxy, it should only be used in sediment cores that were under high river influence. The influence of riverine derived isoprenoid GDGT (isoGDGT) on the isoGDGT-based TEX86 temperature proxy was also examined in marine SPM and sediments. An input of riverine isoGDGTs from the Amazon River was apparent, but its influence on the marine TEX86 was minor since the TEX86 of SPM in the Amazon River was similar to that in the marine SPM and sediments.

Marine sediment sample preparation for analysis for low concentrations of fine detrital gold

USGS Publications Warehouse

Clifton, H. Edward; Hubert, Arthur; Phillips, R. Lawrence

1967-01-01

Analyses by atomic absorption for detrital gold in more than 2,000 beach, offshore, marine-terrace, and alluvial sands from southern Oregon have shown that the values determined from raw or unconcentrated sediment containing small amounts of gold are neither reproducible nor representative of the initial sample. This difficulty results from a 'particle sparsity effect', whereby the analysis for gold in a given sample depends more upon the occurrence of random flakes of gold in the analyzed portion than upon the actual gold content of the sample. The particle sparsity effect can largely be eliminated by preparing a gold concentrate prior to analysis. A combination of sieve, gravimetric, and magnetic separation produces a satisfactory concentrate that yields accurate and reproducible analyses. In concentrates of nearly every marine and beach sand studied, the gold occurs in the nonmagnetic fraction smaller than 0.124 mm and with a specific gravity greater than 3.3. The grain size of gold in stream sediments is somewhat more variable. Analysis of concentrates provides a means of greatly increasing the sensitivity of the analytical technique in relation to the initial sample. Gold rarely exceeds 1 part per million in even the richest black sand analyzed; to establish the distribution of gold (and platinum) in marine sediments and its relationship to source and environmental factors, one commonly needs to know their content to the part per billion range. Analysis of a concentrate and recalculation to the value in the initial sample permits this degree of sensitivity.

Analysis of marine sediment, water and biota for selected organic pollutants

DOE Office of Scientific and Technical Information (OSTI.GOV)

Murray, H.E.; Ray, L.E.; Giam, C.S.

1981-12-01

The concentrations of various organic pollutants (benzo(a)pyrene (BaP), hexachlorobenzene (HCB) and pentachlorophenol (PCP) were determined in samples of water, sediment and biota (flounder, killifish, shrimp, crabs, and squid) from San Luis Pass, Texas. Sediment was also analyzed for polychlorinated biphenyls (PCBs), phthalic acid esters (PAEs) and various pesticides. Only PCP was detectable in water. In sediment, the relative concentrations were PAEs >> BaP > (PCBs approx. HCB) > PCP. In biota, BaP was not detectable in any animal; HCB was highest in crabs and PCP was highest in all others (flounder, killifish, shrimp and squid). The relative concentrations of HCBmore » and PCP were different in the different organisms. The differences between the relative concentrations in the biota and in sediment are discussed. The results of this study are compared to values measured at other sites. This study is part of a larger effort to identify and quantitate pollutants in various Texas estuaries and to serve as a basis for monitoring marine pollution.« less

Formation of natural gas hydrates in marine sediments 1. Conceptual model of gas hydrate growth conditioned by host sediment properties

USGS Publications Warehouse

Clennell, M.B.; Hovland, M.; Booth, J.S.; Henry, P.; Winters, W.J.

1999-01-01

The stability of submarine gas hydrates is largely dictated by pressure and temperature, gas composition, and pore water salinity. However, the physical properties and surface chemistry of deep marine sediments may also affect the thermodynamic state, growth kinetics, spatial distributions, and growth forms of clathrates. Our conceptual model presumes that gas hydrate behaves in a way analogous to ice in a freezing soil. Hydrate growth is inhibited within fine-grained sediments by a combination of reduced pore water activity in the vicinity of hydrophilic mineral surfaces, and the excess internal energy of small crystals confined in pores. The excess energy can be thought of as a "capillary pressure" in the hydrate crystal, related to the pore size distribution and the state of stress in the sediment framework. The base of gas hydrate stability in a sequence of fine sediments is predicted by our model to occur at a lower temperature (nearer to the seabed) than would be calculated from bulk thermodynamic equilibrium. Capillary effects or a build up of salt in the system can expand the phase boundary between hydrate and free gas into a divariant field extending over a finite depth range dictated by total methane content and pore-size distribution. Hysteresis between the temperatures of crystallization and dissociation of the clathrate is also predicted. Growth forms commonly observed in hydrate samples recovered from marine sediments (nodules, and lenses in muds; cements in sands) can largely be explained by capillary effects, but kinetics of nucleation and growth are also important. The formation of concentrated gas hydrates in a partially closed system with respect to material transport, or where gas can flush through the system, may lead to water depletion in the host sediment. This "freeze-drying" may be detectable through physical changes to the sediment (low water content and overconsolidation) and/or chemical anomalies in the pore waters and metastable

Shear-wave velocity of marine sediments offshore Taiwan using ambient seismic noise

NASA Astrophysics Data System (ADS)

Lin, Yu-Tse; Lin, Jing-Yi; Kuo-Chen, Hao; Yeh, Yi-Chin; Cheng, Win-Bin

2017-04-01

Seismic ambient noise technology has many advantages over the traditional two-station method. The most important one is that noise is happening all the time and it can be widely and evenly distributed. Thus, the Green's Function of any station pair can be obtained through the data cross-correlation process. Many related studies have been performed to estimate the velocity structures based on the inland area. Only a few studies were reported for the marine area due to the relatively shorter recording time of ocean bottom seismometers (OBS) deployment and the high cost of the marine experiment. However, the understanding about the shear-wave velocity (Vs) of the marine sediments is very crucial for the hazard assessment related to submarine landslides, particularly with the growing of submarine resources exploration. In this study, we applied the ambient noise technique to four OBS seismic networks located offshore Taiwan in the aim of getting more information about the noise sources and having the preliminary estimation for the Vs of the marine sediments. Two of the seismic networks were deployed in the NE part of Taiwan, near the Ryukyu subduction system, whereas the others were in the SW area, on the continental margin rich in gas hydrate. Generally, ambient seismic noise could be associated with wind, ocean waves, rock fracturing and anthropogenic activity. In the southwestern Taiwan, the cross-correlation function obtained from two seismic networks indicate similar direction, suggestion that the source from the south part of the network could be the origin of the noise. However, the two networks in the northeastern Taiwan show various source direction, which could be caused by the abrupt change of bathymetry or the volcanic degassing effect frequently observed by the marine geophysical method in the area. The Vs determined from the dispersion curve shows a relatively higher value for the networks in the Okinawa Trough (OT) off NE Taiwan than that in the

Marine coastal sediments microbial hydrocarbon degradation processes: contribution of experimental ecology in the omics’era

PubMed Central

Cravo-Laureau, Cristiana; Duran, Robert

2014-01-01

Coastal marine sediments, where important biological processes take place, supply essential ecosystem services. By their location, such ecosystems are particularly exposed to human activities as evidenced by the recent Deepwater Horizon disaster. This catastrophe revealed the importance to better understand the microbial processes involved on hydrocarbon degradation in marine sediments raising strong interests of the scientific community. During the last decade, several studies have shown the key role played by microorganisms in determining the fate of hydrocarbons in oil-polluted sediments but only few have taken into consideration the whole sediment’s complexity. Marine coastal sediment ecosystems are characterized by remarkable heterogeneity, owning high biodiversity and are subjected to fluctuations in environmental conditions, especially to important oxygen oscillations due to tides. Thus, for understanding the fate of hydrocarbons in such environments, it is crucial to study microbial activities, taking into account sediment characteristics, physical-chemical factors (electron acceptors, temperature), nutrients, co-metabolites availability as well as sediment’s reworking due to bioturbation activities. Key information could be collected from in situ studies, which provide an overview of microbial processes, but it is difficult to integrate all parameters involved. Microcosm experiments allow to dissect in-depth some mechanisms involved in hydrocarbon degradation but exclude environmental complexity. To overcome these lacks, strategies have been developed, by creating experiments as close as possible to environmental conditions, for studying natural microbial communities subjected to oil pollution. We present here a review of these approaches, their results and limitation, as well as the promising future of applying “omics” approaches to characterize in-depth microbial communities and metabolic networks involved in hydrocarbon degradation. In addition

Electrolysis-driven bioremediation of crude oil-contaminated marine sediments.

PubMed

Bellagamba, Marco; Cruz Viggi, Carolina; Ademollo, Nicoletta; Rossetti, Simona; Aulenta, Federico

2017-09-25

Bioremediation is an effective technology to tackle crude oil spill disasters, which takes advantage of the capacity of naturally occurring microorganisms to degrade petroleum hydrocarbons under a range of environmental conditions. The enzymatic process of breaking down oil is usually more rapid in the presence of oxygen. However, in contaminated sediments, oxygen levels are typically too low to sustain the rapid and complete biodegradation of buried hydrocarbons. Here, we explored the possibility to electrochemically manipulate the redox potential of a crude oil-contaminated marine sediment in order to establish, in situ, conditions that are conducive to contaminants biodegradation by autochthonous microbial communities. The proposed approach is based on the exploitation of low-voltage (2V) seawater electrolysis to drive oxygen generation (while minimizing chlorine evolution) on Dimensionally Stable Anodes (DSA) placed within the contaminated sediment. Results, based on a laboratory scale setup with chronically polluted sediments spiked with crude oil, showed an increased redox potential and a decreased pH in the vicinity of the anode of 'electrified' treatments, consistent with the occurrence of oxygen generation. Accordingly, hydrocarbons biodegradation was substantially accelerated (up to 3-times) compared to 'non-electrified' controls, while sulfate reduction was severely inhibited. Intermittent application of electrolysis proved to be an effective strategy to minimize the energy requirements of the process, without adversely affecting degradation performance. Taken as a whole, this study suggests that electrolysis-driven bioremediation could be a sustainable technology for the management of contaminated sediments. Copyright © 2016 Elsevier B.V. All rights reserved.

Photolytic Release of Dissolved Vanadium and Copper from Resuspended Coastal Marine Sediments

NASA Astrophysics Data System (ADS)

Skrabal, S. A.; Hammaker, S. N.; McBurney, A. W.; Avery, G. B., Jr.; Kieber, R. J.; Mead, R. N.

2016-02-01

Sunlight photolysis engenders release of dissolved vanadium (V), copper (Cu), and dissolved organic carbon (DOC) from a wide variety of resuspendable coastal marine sediments. Net photoreleases after 6 h of simulated sunlight were as high as 12 nM for Cu and as high as 15 nM for V. Release of Cu significantly correlated with sediment Cu. Photoreleased Cu (but not V) correlated with sediment Fe content, suggesting that photoreduction of Fe oxide carrier phases may be an important photoproduction mechanism for Cu. Longer term experiments showed continued release of metals that were not immediately readsorbed back onto sediments after 24 h of irradiation suggesting that photoproduced metals persist in the dissolved phase and are not immediately scavenged onto particles. Experiments utilizing differing total suspended sediment (TSS) levels show that, although higher TSS causes more photoproduction of Cu and V, the amount produced per mass of sediment is greatest at the lowest TSS. Vanadium photoproduction increased in Macondo oil-amended sediments compared to controls after a one-month incubation period suggesting that the oil may be a source of this metal to the water column. These results imply that photoproduction is an unrecognized source of the micronutrient metals Cu and V to coastal waters.

Stereochemistry of amino acids in surface samples of a marine sediment

NASA Technical Reports Server (NTRS)

Pollock, G. E.; Kvenvolden, K. A.

1978-01-01

In two surface samples of marine sediment, the percentages of D-alanine and D-aspartic acid are significantly higher than the other D-amino acids and are similar to the range found in soils. The percentage of D-glutamic acid is also higher than the other amino acids but less than D-alanine and D-aspartic acid. These D-amino acids may come mainly from bacteria.

Stereochemistry of amino acids in surface samples of a marine sediment

USGS Publications Warehouse

Pollock, G.E.; Kvenvolden, K.A.

1978-01-01

In two surface samples of marine sediment, the percentages of d-alanine and d-aspartic acid are significantly higher than the other d-amino acids and are similar to the range found in soils. The percentage of d-glutamic acid is also higher than the other amino acids but less than d-alanine and d-aspartic acid. These d-amino acids may come mainly from bacteria. ?? 1978.

Stable carbon isotope ratios of intact GDGTs indicate heterogeneous sources to marine sediments

NASA Astrophysics Data System (ADS)

Pearson, Ann; Hurley, Sarah J.; Walter, Sunita R. Shah; Kusch, Stephanie; Lichtin, Samantha; Zhang, Yi Ge

2016-05-01

Thaumarchaeota, the major sources of marine glycerol dibiphytanyl glycerol tetraether lipids (GDGTs), are believed to fix the majority of their carbon directly from dissolved inorganic carbon (DIC). The δ13C values of GDGTs (δ13CGDGT) may be powerful tools for reconstructing variations in the ocean carbon cycle, including paleoproductivity and water mass circulation, if they can be related to values of δ13CDIC. To date, isotope measurements primarily are made on the C40 biphytane skeletons of GDGTs, rather than on complete tetraether structures. This approach erases information revealed by the isotopic heterogeneity of GDGTs within a sample and may impart an isotopic fractionation associated with the ether cleavage. To circumvent these issues, we present δ13C values for GDGTs from twelve recent sediments representing ten continental margin locations. Samples are purified by orthogonal dimensions of HPLC, followed by measurement of δ13C values by Spooling Wire Microcombustion (SWiM)-isotope ratio mass spectrometry (IRMS) with 1σ precision and accuracy of ±0.25‰. Using this approach, we confirm that GDGTs, generally around -19‰, are isotopically ;heavy; compared to other marine lipids. However, measured δ13CGDGT values are inconsistent with predicted values based on the 13C content of DIC in the overlying water column and the previously-published biosynthetic isotope fractionation for a pure culture of an autotrophic marine thaumarchaeon. In some sediments, the isotopic composition of individual GDGTs differs, indicating multiple source inputs. The data appear to confirm that crenarchaeol primarily is a biomarker for Thaumarchaeota, but its δ13C values still cannot be explained solely by autotrophic carbon fixation. Overall the complexity of the results suggests that both organic carbon assimilation (ca. 25% of total carbon) and multiple source(s) of exogenous GDGTs (contributing generally <30% of input to sediments) are necessary to explain the observed

Formation of natural gas hydrates in marine sediments. Gas hydrate growth and stability conditioned by host sediment properties

USGS Publications Warehouse

Clennell, M.B.; Henry, P.; Hovland, M.; Booth, J.S.; Winters, W.J.; Thomas, M.

2000-01-01

The stability conditions of submarine gas hydrates (methane clathrates) are largely dictated by pressure, temperature, gas composition, and pore water salinity. However, the physical properties and surface chemistry of the host sediments also affect the thermodynamic state, growth kinetics, spatial distributions, and growth forms of clathrates. Our model presumes that gas hydrate behaves in a way analogous to ice in the pores of a freezing soil, where capillary forces influence the energy balance. Hydrate growth is inhibited within fine-grained sediments because of the excess internal phase pressure of small crystals with high surface curvature that coexist with liquid water in small pores. Therefore, the base of gas hydrate stability in a sequence of fine sediments is predicted by our model to occur at a lower temperature, and so nearer to the seabed than would be calculated from bulk thermodynamic equilibrium. The growth forms commonly observed in hydrate samples recovered from marine sediments (nodules, sheets, and lenses in muds; cements in sand and ash layers) can be explained by a requirement to minimize the excess of mechanical and surface energy in the system.

Polycyclic aromatic hydrocarbons in sediments and marine organisms: Implications of anthropogenic effects on the coastal environment.

PubMed

Sun, Runxia; Sun, Yue; Li, Qing X; Zheng, Xiaobo; Luo, Xiaojun; Mai, Bixian

2018-05-30

Intensive human activities aggravate environmental pollution, particularly in the coastal environment. Sixteen priority polycyclic aromatic hydrocarbons (PAHs) were determined in the sediments and marine species from Zhanjiang Harbor, a large harbor in China. The total PAH concentrations ranged from 151 to 453 ng/g dry weight (dw) in sediments and from 86.7 to 256 ng/g wet weight (ww) in organism tissues. High levels of PAHs occurred in the sample sites next to the estuary. A decrease in PAH levels was observed in comparison to the previous survey prior to 2012. Fish exhibited lower lipid weight normalized PAH concentrations than the other species, which may be related to their efficient metabolic transformation. Three ring PAHs dominated both in marine sediments and species, but low molecular weight PAHs exhibited higher proportions in biota than in sediments (p < 0.05). Petrogenic and pyrolytic sources both contributed to the occurrence of PAHs, and the latter became increasingly important in the study area. The ecological risk from PAHs in the sediments was relatively low (9% incidence of adverse biological effect) according to the effects-based sediment quality guideline values. Exposure to PAHs via consuming seafoods might pose a health risk to local residents. Overall, these results revealed anthropogenic activities in the coastal area have an impact on the local ecosystem. Copyright © 2018 Elsevier B.V. All rights reserved.

Pacing of deep marine sedimentation in the middle Eocene synorogenic Ainsa Basin, Spanish Pyrenees: deconvolving a 6myr record of tectonic and climate controls

NASA Astrophysics Data System (ADS)

Mac Niocaill, C.; Cantalejo, B.; Pickering, K. T.; Grant, M.; Johansen, K.

2016-12-01

The Middle Eocene thrust-top Ainsa Basin of Northern Spain preserves world-class exposures of deep-marine submarine fan and related deposits. Detailed paleomagnetic, micropaleontologic, and time-series analysis enable us to deconvolve, for the first time in any ancient deep-marine basin worldwide, both the pacing on deposition of the fine-grained interfan sediments and the main sandbodies (submarine fans) through the history of the deep-marine basin. Our magnetostratigraphy and faunal constraints provide a chronological framework for sedimentation in the basin. We use time-series analysis of a range of geochemical and sedimentologic data to identify likely climatic signals in the sedimentary archive. This has enabled us to test the likely importance of climate versus tectonics in controlling deposition. We show that the fine-grained interfan sedimentation preserves a dominant Milankovitch-like cyclicity, whereas the sandbodies (fans) reflect a complex interplay of controls such as tectonics and climate in the sediment source area, including shallow-marine staging areas for sediment redeposition into deeper water. These results not only provide critical information about the timing of substantial coarse clastic delivery into the Ainsa Basin but also give constraints on sediment flux over a 6 Myr window.

Marine Microbial Gene Abundance and Community Composition in Response to Ocean Acidification and Elevated Temperature in Two Contrasting Coastal Marine Sediments.

PubMed

Currie, Ashleigh R; Tait, Karen; Parry, Helen; de Francisco-Mora, Beatriz; Hicks, Natalie; Osborn, A Mark; Widdicombe, Steve; Stahl, Henrik

2017-01-01

Marine ecosystems are exposed to a range of human-induced climate stressors, in particular changing carbonate chemistry and elevated sea surface temperatures as a consequence of climate change. More research effort is needed to reduce uncertainties about the effects of global-scale warming and acidification for benthic microbial communities, which drive sedimentary biogeochemical cycles. In this research, mesocosm experiments were set up using muddy and sandy coastal sediments to investigate the independent and interactive effects of elevated carbon dioxide concentrations (750 ppm CO 2 ) and elevated temperature (ambient +4°C) on the abundance of taxonomic and functional microbial genes. Specific quantitative PCR primers were used to target archaeal, bacterial, and cyanobacterial/chloroplast 16S rRNA in both sediment types. Nitrogen cycling genes archaeal and bacterial ammonia monooxygenase ( amoA ) and bacterial nitrite reductase ( nirS ) were specifically targeted to identify changes in microbial gene abundance and potential impacts on nitrogen cycling. In muddy sediment, microbial gene abundance, including amoA and nirS genes, increased under elevated temperature and reduced under elevated CO 2 after 28 days, accompanied by shifts in community composition. In contrast, the combined stressor treatment showed a non-additive effect with lower microbial gene abundance throughout the experiment. The response of microbial communities in the sandy sediment was less pronounced, with the most noticeable response seen in the archaeal gene abundances in response to environmental stressors over time. 16S rRNA genes ( amoA and nirS ) were lower in abundance in the combined stressor treatments in sandy sediments. Our results indicated that marine benthic microorganisms, especially in muddy sediments, are susceptible to changes in ocean carbonate chemistry and seawater temperature, which ultimately may have an impact upon key benthic biogeochemical cycles.

Marine geochemical cycles of the alkali elements and boron: the role of sediments

NASA Astrophysics Data System (ADS)

James, Rachael H.; Palmer, Martin R.

2000-09-01

We have analysed the concentrations of Li, K, Rb, Cs, and B, and the isotopic ratios of Li and B of a suite of pore fluids recovered from ODP Sites 1037 (Leg 169; Escanaba Trough) and 1034 (Leg 169S; Saanich Inlet). In addition, we have analysed dissolved K, Rb, and Cs concentrations for estuarine mixing of the Ganges-Brahmaputra river system. Together, these data sets have been used to assess the role of sediments in the marine geochemical cycles of the alkali elements and boron. Uptake onto clay minerals during estuarine mixing removes 20-30% of the riverine input of dissolved Cs and Rb to the oceans. Prior to this study, the only other recognised sink of Rb and Cs was uptake during low-temperature alteration of the oceanic crust. Even with this additional sink there is an excess of inputs over outputs in their modern oceanic mass balance. Pore fluid data show that Li and Rb are transferred into marine sediments during early diagenesis. However, modeling of the Li isotope systematics of the pore fluids from Site 1037 shows that seawater Li taken up during marine sedimentation can be readily returned to solution in the presence of less hydrated cations, such as NH 4+. This process also appears to result in high concentrations of pore fluid Cs (relative to local seawater) due to expulsion of adsorbed Cs from cation exchange sites. Flux calculations based on pore fluid data for a series of ODP sites indicate that early diagenesis of clay sediments removes around 8% of the modern riverine input of dissolved Li. Although NH 4+-rich fluids do result in a flux of Cs to the oceans, on the global scale this input only augments the modern riverine Cs flux by ˜3%. Nevertheless, this may have implications for the fate of radioactive Cs in the natural environment and waste repositories.

Microbial Diversity in Sulfate-Reducing Marine Sediment Enrichment Cultures Associated with Anaerobic Biotransformation of Coastal Stockpiled Phosphogypsum (Sfax, Tunisia)

PubMed Central

Zouch, Hana; Karray, Fatma; Armougom, Fabrice; Chifflet, Sandrine; Hirschler-Réa, Agnès; Kharrat, Hanen; Kamoun, Lotfi; Ben Hania, Wajdi; Ollivier, Bernard; Sayadi, Sami; Quéméneur, Marianne

2017-01-01

Anaerobic biotechnology using sulfate-reducing bacteria (SRB) is a promising alternative for reducing long-term stockpiling of phosphogypsum (PG), an acidic (pH ~3) by-product of the phosphate fertilizer industries containing high amounts of sulfate. The main objective of this study was to evaluate, for the first time, the diversity and ability of anaerobic marine microorganisms to convert sulfate from PG into sulfide, in order to look for marine SRB of biotechnological interest. A series of sulfate-reducing enrichment cultures were performed using different electron donors (i.e., acetate, formate, or lactate) and sulfate sources (i.e., sodium sulfate or PG) as electron acceptors. Significant sulfide production was observed from enrichment cultures inoculated with marine sediments, collected near the effluent discharge point of a Tunisian fertilizer industry (Sfax, Tunisia). Sulfate sources impacted sulfide production rates from marine sediments as well as the diversity of SRB species belonging to Deltaproteobacteria. When PG was used as sulfate source, Desulfovibrio species dominated microbial communities of marine sediments, while Desulfobacter species were mainly detected using sodium sulfate. Sulfide production was also affected depending on the electron donor used, with the highest production obtained using formate. In contrast, low sulfide production (acetate-containing cultures) was associated with an increase in the population of Firmicutes. These results suggested that marine Desulfovibrio species, to be further isolated, are potential candidates for bioremediation of PG by immobilizing metals and metalloids thanks to sulfide production by these SRB. PMID:28871244

Thermal alteration of organic matter in recent marine sediments. 2: Isoprenoids. [Tanner Basin off Southern California

NASA Technical Reports Server (NTRS)

Ikan, R.; Baedecker, M. J.; Kaplan, I. R.

1974-01-01

A series of isoprenoid compounds were isolated from a heat treated marine sediment (from Tanner Basin) which were not present in the original sediment. Among the compounds identified were: phytol, dihydrophytol, c-18-isoprenoid ketone, phytanic and pristanic acids, c-19 and c-20-monoolefines, and the alkanes pristane and phytane. The significance and possible routes leading to these compounds is discussed.

Thermal alteration experiments on organic matter in recent marine sediments as a model for petroleum genesis

NASA Technical Reports Server (NTRS)

Baedecker, M. J.; Ikan, R.; Ishiwatari, R.; Kaplan, I. R.

1977-01-01

The fate of naturally occurring lipids and pigments in a marine sediment exposed to elevated temperatures was studied. Samples of a young marine sediment from Tanner Basin, California, were heated to a series of temperatures (65-200 C) for varying periods of time (7-64 days). The sediment was analyzed prior to and after heating for pigments, isoprenoid compounds, alcohols, fatty acids, and hydrocarbons. Structural changes caused by heating unextractable organic material (kerogen) were also studied, and the significance of the results for understanding petroleum genesis is considered. Among other results, fatty acids and hydrocarbons increased in abundance although there appeared to be no obvious precursor-to-product relationship via simple decarboxylation reactions. Chlorins were partially converted into porphyrins. The phytyl side chain of pheophytin was initially preserved intact by reduction of the phytyl double bond, but later converted to a variety of isoprenoid compounds including alkanes. Thermal grafting of components onto kerogen occurred as well as structural changes caused by heat.

Marine sediments and Beryllium-10 record of the geomagnetic moment variations during the Brunhes period.

NASA Astrophysics Data System (ADS)

Ménabréaz, Lucie; Thouveny, Nicolas; Bourlès, Didier; Demory, François

2010-05-01

Over millennial time scales, the atmospheric production of the cosmonuclid 10Be (half-life 1.387 ± 0.012 Ma [Shmeleff et al., 2009; Korschinek et al., 2009]) is modulated by the geomagnetic field strength, following a negative power law (e.g. Lal, 1988; Masarik and Beer, 2009). With respect to paleomagnetic reconstructions, 10Be-derived paleointensity records can therefore constitute an alternative, global and independent reading of the dipole moment variations. During the last years, efforts have been made to extract a geomagnetic signal from single and stacked 10Be records in natural archives such as ice and marine sediments (e.g. Carcaillet et al., 2004; Christl et al., 2007; Muscheler et al., 2005). In marine sediments, the 10Be concentration results from complex interplay of several processes: cosmogenic production, adsorption on sediment particles, redistribution by fluviatile and oceanic transport, and deposition. Therefore, a correction procedure is required to consider both sediment redistribution and enhanced scavenging, which can alter the primary signatures. To reconstruct the succession of field intensity lows accompanying excursions during the Brunhes chron, we investigated authigenic 10Be/9Be record of marine sequences also studied for paleomagnetism and oxygen isotopes. Mid and low latitude sites were preferred in order to benefit from the most efficient modulation by the magnetospheric shielding. We present a high resolution authigenic 10Be/9Be record of the last 50 ka recovered from the Portuguese Margin, that deciphers the cosmonuclide 10Be overproduction created by the geomagnetic dipole low associated with the Laschamp excursion. This record is compared to other proxy records of the geomagnetic field variations for the same time interval: (1) the relative paleointensity (RPI) reconstructed from the same sediments and the GLOPIS-75 record (Laj et al., 2004), (2) the absolute VDM record based on absolute paleointensities measured on lava flows

Dehalogenation activities and distribution of reductive dehalogenase homologous genes in marine subsurface sediments.

PubMed

Futagami, Taiki; Morono, Yuki; Terada, Takeshi; Kaksonen, Anna H; Inagaki, Fumio

2009-11-01

Halogenated organic compounds serve as terminal electron acceptors for anaerobic respiration in a diverse range of microorganisms. Here, we report on the widespread distribution and diversity of reductive dehalogenase homologous (rdhA) genes in marine subsurface sediments. A total of 32 putative rdhA phylotypes were detected in sediments from the southeast Pacific off Peru, the eastern equatorial Pacific, the Juan de Fuca Ridge flank off Oregon, and the northwest Pacific off Japan, collected at a maximum depth of 358 m below the seafloor. In addition, significant dehalogenation activity involving 2,4,6-tribromophenol and trichloroethene was observed in sediment slurry from the Nankai Trough Forearc Basin. These results suggest that dehalorespiration is an important energy-yielding pathway in the subseafloor microbial ecosystem.

Linking metatranscriptomic to bioremediation processes of oil contaminated marine sediments

NASA Astrophysics Data System (ADS)

Cuny, P.; Atkinson, A.; Léa, S.; Guasco, S.; Jezequel, R.; Armougom, F.; Michotey, V.; Bonin, P.; Militon, C.

2016-02-01

Oil-derived hydrocarbons are one major source of pollution of marine ecosystems. In coastal marine areas they tend to accumulate in the sediment where they can impact the benthic communities. Oil hydrocarbons biodegradation by microorganisms is known to be one of the prevalent processes acting in the removal of these contaminants from sediments. The redox oscillation regimes generated by bioturbation, and the efficiency of metabolic coupling between functional groups associated to these specific redox regimes, are probably determinant factors controlling hydrocarbon biodegradation. Metatranscriptomic analysis appears like a promising approach to shed new light on the metabolic processes involved in the response of microbial communities to oil contamination in such oxic/anoxic oscillating environments. In the framework of the DECAPAGE project (ANR CESA-2011-006 01), funded by the French National Agency for Research, the metatranscriptomes (RNA-seq) of oil contaminated or not (Ural blend crude oil, 5 000 ppm) and bioturbated or not (addition of the common burrowing organism Hediste diversicolor, 1000 ind/m2) mudflat sediments, incubated in microcosms during 4 months at 19±1°C, were compared. The analysis of active microbial communities by SSU rRNA barcoding shows that the main observable changes are due to the presence of H. diversicolor. On the contrary, oil addition is the main factor explaining the observed changes in the genes expression patterns with 1949 genes specifically up or down-regulated (which is the case of only 245 genes when only H. diversicolor worms are added). In particular, the oil contamination leads to a marked overexpression (i) of benzyl- and alkylsuccinate synthase genes (ass and bss) that are involved in the anaerobic metabolism of aromatics (toluene) and alkanes, respectively and, (ii) of genes coding for nucleotide excision repair exonucleases indicating that DNA repair processes are also activated.

Complete oxidation of solid phase sulfides by manganese and bacteria in anoxic marine sediments

NASA Astrophysics Data System (ADS)

Aller, Robert C.; Rude, Peter D.

1988-03-01

During the physical or biological reworking of surficial marine sediments, metal oxides are often brought into contact with both solid and dissolved sulfides. Experiments simulating these mixing processes demonstrate that in natural sediments Mn-oxides can completely oxidize solid phase sulfides to SO 4- under anoxic conditions. The major source of sulfur is probably acid volatile sulfide. Minerals containing Mn +4 are apparently more effective than Mn +3 in driving the oxidation. There is slight or no evidence for complete sulfide oxidation by Fe-oxides under similar conditions. The reaction is inhibited by DNP (dinitrophenol) and azide, implying biological mediation by a group of chemolithotrophic bacteria such as the thiobacilli, having a well-organized cytochrome system, oxidative phosphorylation coupled with sulfide oxidation, and possibly aulolrophic CO 2 fixation. Lack of sensitivity to chlorate suggests that a No 3- reductase complex is not involved. Because of metal reduction and the overall stoichiometry of reaction, this sulfide oxidation causes a rise in pH in contrast to oxidation by O 2. Alkalinity is also simultaneously depeleted by Mn, Ca carbonate precipitation. Both manganoan kutnahorite and manganoan calcite are observed to form rapidly (days) during Mn reduction. The oxidation of sulfides by Mn-oxides is likely to be important, but highly variable, in organic-rich shelf sediments and environments such as hydrothermal vents where sulfidic plumes contact oxidized metals. A substantial Proportion of sedimentary sulfide may be oxidized and Mn reduced by this pathway, particularly in bioturbated sediments. The relative roles of lithotrophic (S) and heterotrophic (C) Mn-reduction in marine sediments are presently unknown.

Impact of Ibrahim River on the spatial variation of coastal marine sediment characteristics

NASA Astrophysics Data System (ADS)

Ghsoub, Myriam; Fakhri, Milad; Courp, Thierry; Khalaf, Gaby; Buscail, Roselyne; Ludwig, Wolfgang

2017-04-01

In the aim to evaluate the impact of Ibrahim River on the environmental status of its coastal marine zone, sedimentological (grain size composition), geochemical (organic carbon, total nitrogen, total carbon, organic matter, calcium carbonate, organic and inorganic phosphate) biochemical (chlorophyll-a, pheopigments) and biological parameters (macro-invertebrates) of the sediment were analyzed and interpreted. Three sampling campaigns were executed using the scientific vessel CANA-CNRS on 26-4-2016, 20-6-2016 and 29-7-2016 successively. The samples were collected according to a middle horizontal transectat three different depths (10, 20, and 30 m).The grain size composition of the sediment was mainly composed of fine sand. The obtained values of organic matter ranged between 32 and 54 mg/g. The total nitrogen was between 0.006 and 0.014%. The percentage of calcium carbonate fluctuated between 20 and 30%. This situation may be attributed to the decomposition and the sinking of the shells and some aquatic organism such as Coccolithophores, foraminifers, gastropods and bivalves. Calcium carbonate may also have terrestrial origin related to the carbonated adjacent land and may be exported to the coastal area with the river inputs. The sediment of the studied area was richer in pheopigments (between 0.8 and 3 μg/g) than in chlorophyll-a (less than 0.4 μg/g) witnessing the presence of degraded material due to the high hydrodynamic conditions. Furthermore, the low values of chlorophyll-a witnessed the oligotrophy of the zone. The concentrations of total phosphate ranged between 97 and 148 μg/g. The dominance of the inorganic phosphate at all sampling points indicates that phosphorus is available for the producers, and that the studied area is less contaminated with anthropogenic discharges. This research project reveals the presence of gastropods, crustaceans and some polychaetes along the five studied stations. These groups are generally found in sandy bottoms

Inexpensive metagenomic DNA extraction protocol with high quality from marine sediments contaminated by petroleum hydrocarbons.

PubMed

García-Bautista, I; Toledano-Thompson, T; Dantán-González, E; González-Montilla, J; Valdez-Ojeda, R

2017-09-21

Marine environments are a reservoir of relevant information on dangerous contaminants such as hydrocarbons, as well as microbial communities with probable degradation skills. However, to access microbial diversity, it is necessary to obtain high-quality DNA. An inexpensive, reliable, and effective metagenomic DNA (mgDNA) extraction protocol from marine sediments contaminated with petroleum hydrocarbons was established in this study from modifications to Zhou's protocol. The optimization included pretreatment of sediment with saline solutions for the removal of contaminants, a second precipitation and enzymatic degradation of RNA, followed by purification of mgDNA extracted by electroelution. The results obtained indicated that the modifications applied to 12 sediments with total petroleum hydrocarbon (TPH) concentrations from 22.6-174.3 (µg/g dry sediment) yielded 20.3-321.3 ng/µL mgDNA with A 260 /A 280 and A 260 /A 230 ratios of 1.75 ± 0.08 and 1.19 ± 0.22, respectively. The 16S rRNA amplification confirmed the purity of the mgDNA. The suitability of this mgDNA extraction protocol lies in the fact that all chemical solutions utilized are common in all molecular biology laboratories, and the use of dialysis membrane does not require any sophisticated or expensive equipment, only an electrophoretic chamber.

Natural and Human Impacts on the Coastal Environment of Taiwan Recorded in Marine Sediments During the last century

NASA Astrophysics Data System (ADS)

Li, H.; Chen, Z.; Huh, C.; Chen, K.; Lin, Y.; Hsu, F.

2012-12-01

Located at tropical-to-subtropical region on the Pacific rim, Taiwan has very high erosion rate due to steep topography and heavy rainfall especially typhoons. The high sedimentation rates in Taiwan Strait allow us to retrieve high-resolution marine records which reveal natural changes and human impacts on the coastal environment of Taiwan over the past 100 years. Five gravity and box cores well dated by 210Pb and 137Cs methods were analyzed for elemental concentrations in the acid-leachable phase, total organic carbon (TOC), δ13CTOC, δ13C and δ18O of carbonates. The results show that: (1) Positive correlation between TOC and typhoon rainfall since 1940 indicate that decline of vegetation coverage resulted in intensification of soil erosion. The δ13CTOC values illustrate that the organic carbon in the sediments was originated mainly from land input. (2) The δ18O difference between foraminiferal shells and carbonate grains can be used for rainfall reconstruction. (3) The Ca concentrations mainly from carbonates in the sediments were decreased since AD 1940, reflecting changes in sedimentary source and ocean acidfication. As development of the land use, more and more soil erosion caused depletion of authigenic marine sediments in the coast region. Ocean acidification led to less carbonate formation in seawater. (4) Since 1920, Pb concentration rapidly increased and peaked at ~1970 as Pb input from gasoline usage. Pb concentration dropped from 1970 to 1975 perhaps due to unleaded gasoline replacement. (5) In the nearshore environment, heavy metals such as Mn, Cu and Pb in the acid-leachable phase of the sediments strongly increased from 1950 to 1965 then kept relatively high level, reflecting heavy metal contamination from industrial source. The human impact on the coastal region of Taiwan not only caused changes in marine sediments and ocean water, but also disturbed the marine ecosystem. This study has been funded by NSC-100-3113-E-002-009: Study of CO2 capture

Effects of pollution on the geochemical properties of marine sediments across the fringing reef of Aqaba, Red Sea.

PubMed

Al-Rousan, Saber; Al-Taani, Ahmed A; Rashdan, Maen

2016-09-15

The Gulf of Aqaba is of significant strategic and economic value to all gulf-bordering states, particularly to Jordan, where it provides Jordan with its only marine outlet. The Gulf is subject to a variety of impacts posing imminent ecological risk to its unique marine ecosystem. We attempted to investigate the status of metal pollution in the coastal sediments of the Jordanian Gulf of Aqaba. The distribution of Cd, Cr, Zn, Cu, Pb, Al, Fe, and Mn concentrations were determined in trapped and bottom-surface sediments at three selected sites at different depths. In addition, monthly sedimentation rates at varying water depths were also estimated at each sampling site using sediment traps. The high concentrations of Cd, Cr, Zn were recorded at the Phosphate Loading Birth (PLB) site followed by the Industrial Complex (IC) site indicating their dominant anthropogenic source (i.e., the contribution of industrial activities). However, Fe, Al, and Mn contents were related to inputs from the terrigenous (crustal) origin. Except for Al, Fe and Mn at the PLB site, the concentrations of metals exhibited a decreasing trend with increasing water depth (distance from the shoreline). The PLB site also showed the highest sedimentation rate which decreased with increasing water depth. The Enrichment factors (EFs) showed that Cd was the most enriched element in the sediment (indicating that Cd pollution is widespread), whereas the least enriched metal in sediments was Cu. EF values suggested that the coastal area is impacted by a combination of human and natural sources of metals, where the anthropogenic sources are intense in the PLB site (north of Gulf of Aqaba). The MSS area is potentially the least polluted, consistent with being a marine reserve. The IC sediments have been found to be impacted by human activities but less intensely compared to the PLB area. These results suggested that there are two sources of metals in sediments; the primary source is likely closer to PLB

Investigating Deep-Marine Sediment Waves in the Northern Gulf of Mexico Using 3D Seismic Data

NASA Astrophysics Data System (ADS)

Wang, Z.; Gani, M. R.

2016-12-01

Deep-water depositional elements have been studied for decades using outcrop, flume tank, sidescan sonar, and seismic data. Even though they have been well recognized by researchers, the improvements in the quality of 3D seismic data with increasingly larger dimension allow detailed analysis of deep-water depositional elements with new insights. This study focuses on the deep-marine sediment waves in the northern Gulf of Mexico. By interpreting a 3D seismic dataset covering 635 km2 at Mississippi Canyon and Viosca Knoll areas, large sediment waves, generated by sediment gravity flows, were mapped and analyzed with various seismic attributes. A succession of sediment waves, approximately 100 m in thickness, is observed on the marine slope that tapers out at the toe of the slope. The individual sediment wave exhibits up to 500 m in wavelength and up to 20 m in height. The wave crests oriented northeast-southwest are broadly aligned parallel to the regional slope-strike, indicating their sediment gravity flow origin. The crestlines are straight or slightly sinuous, with sinuosity increasing downslope. Their anti-dune patterns likely imply the presence of supercritical flows. The sediment waves have a retrogradational stacking pattern. Seismic amplitude maps of each sediment wave revealed that after depositing the majority of sheet-like sands on the upper slope, sediment gravity flows started to form large sediment waves on the lower slope. The steep and narrow upcurrent flanks of the sediment waves always display higher amplitudes than the gentle and wide downcurrent flanks, indicating that the sands were likely preferentially trapped along the upcurrent flanks, whereas the muds spread along the downcurrent flanks. The formation of sediment waves likely requires a moderate sand-mud ratio, as suggested by these observations: (1) absence of sediment waves on the upper slope where the sands were mainly deposited as unconfined sheets with a high sand-mud ratio; (2

Glacial marine sediments in the precambrian Gowganda formation at Whitefish Falls, Ontario (Canada)

USGS Publications Warehouse

Lindsey, D.A.

1971-01-01

Study of a well-exposed section of the Gowganda Formation at Whitefish Falls, Ontario, suggests criteria for the recognition of glacial marine sediments. Thickness of hundreds of feet, lateral continuity, faint internal stratification, sorted lenses of sandstone and conglomerate, and dropstones characterize much of the tillite. Thickness of hundreds of feet, lateral continuity, and marked development of irregular and lenticular laminae instead of varve structure characterize much of the argillite. These characteristics, together with evidence for a nearshore, marine-to-deltaic environment for the overlying beds, suggest a glacial marine interpretation even though no fossil evidence is available. Massive tillite, tillite containing faint stratification and lenses of sorted conglomerate and sandstone, and dropstone-bearing argillite, all of which interfinger, suggest a glacial marine environment composed of: (1) a subglacial facies; (2) a periglacial facies; and (3) a facies of marine ice rafting, respectively. Separation of the two tillite-bearing members by as much as 700 ft. of argillite containing no dropstones suggests two distinct ice ages during Gowganda time. ?? 1971.

Relative role of pore water versus ingested sediment in bioavailability of organic contaminants in marine sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Forbes, T.L.; Hansen, R.; Kure, L.K.

Experimental data for fluoranthene and feeding selectivity in combination with reaction-diffusion modeling suggest that ingestion of contaminated sediment may often be the dominant uptake pathway for deposit-feeding invertebrates in sediments. A dietary absorption efficiency of 56% and accompanying forage ratio of 2.4 were measured using natural sediment that had been dual-labeled ({sup 14}C:{sup 51}Cr) with fluoranthene and fed to the marine deposit-feeding polychaete Capitella species I. Only 3 to 4% of the total absorption could be accounted for by desorption during gut passage. These data were then used as input into a reaction-diffusion model to calculate the importance of uptakemore » from ingested sediment relative to pore-water exposure. The calculations predict a fluoranthene dietary uptake flux that is 20 to 30 times greater than that due to pore water. Factors that act to modify or control the formation of local chemical gradients, boundary layers, or dietary absorption rates including particle selection or burrow construction will be important in determining the relative importance of potential exposure pathways. From a chemical perspective, the kinetics of the adsorption and desorption process are especially important as they will strongly influence the boundary layer immediately surrounding burrowing animals or irrigated tubes. The most important biological factors likely include irrigation behavior and burrow density and size.« less

Environmental Characteristics of Polybrominated Diphenyl Ethers in Marine System, with Emphasis on Marine Organisms and Sediments

PubMed Central

Zhang, Ying; Wang, Weiliang; Yuan, Huamao; Yan, Huijun; Zhang, Jinpeng; Pei, Zhen; He, Zhipeng

2016-01-01

Polybrominated diphenyl ethers (PBDEs), due to their widespread usage as flame retardants and their lipophilicity and persistence, have become ubiquitous in the environment. It is urgent to understand the environmental characteristics of PBDEs in marine system, but they have attracted little attention. We summarize the available data and analyze the regional distributions, controlling factors, and congener patterns of PBDEs in marine and associated environmental matrixes worldwide. Based on meta-analysis, after separating the estuarial sites from the marine sites, ignoring the extraordinary sample sites such as those located just near the point source, the PBDE concentration levels are still in the same order of magnitude from global scale. Despite Principal Component Analysis, the congener patterns of sediments are predominant with the heavy brominated congeners (BDE-209 contributing over 75% to the total load) while the biota abound with the light ones (BDE-47, BDE-99, and BDE-100 taking about 80%). The ratio between BDE-99 and BDE-100 for the lower trophic-level species often turns to be greater than 1, while for those higher species the ratio may be below 1, and some species feed mainly on the crustaceans and zooplankton seems to have a higher ratio value. The data of the PBDEs in marine system are currently limited; thus, data gaps are identified as well. PMID:27999788

Contamination of port zone sediments by metals from Large Marine Ecosystems of Brazil.

PubMed

Buruaem, Lucas M; Hortellani, Marcos A; Sarkis, Jorge E; Costa-Lotufo, Leticia V; Abessa, Denis M S

2012-03-01

Sediment contamination by metals poses risks to coastal ecosystems and is considered to be problematic to dredging operations. In Brazil, there are differences in sedimentology along the Large Marine Ecosystems in relation to the metal distributions. We aimed to assess the extent of Al, Fe, Hg, Cd, Cr, Cu, Ni, Pb and Zn contamination in sediments from port zones in northeast (Mucuripe and Pecém) and southeast (Santos) Brazil through geochemical analyses and sediment quality ratings. The metal concentrations found in these port zones were higher than those observed in the continental shelf or the background values in both regions. In the northeast, metals were associated with carbonate, while in Santos, they were associated with mud. Geochemical analyses showed enrichments in Hg, Cd, Cu, Ni and Zn, and a simple application of international sediment quality guidelines failed to predict their impacts, whereas the use of site-specific values that were derived by geochemical and ecotoxicological approaches seemed to be more appropriate in the management of the dredged sediments. Copyright © 2012 Elsevier Ltd. All rights reserved.

Temperature-driven decoupling of key phases of organic matter degradation in marine sediments.

PubMed

Weston, Nathaniel B; Joye, Samantha B

2005-11-22

The long-term burial of organic carbon in sediments results in the net accumulation of oxygen in the atmosphere, thereby mediating the redox state of the Earth's biosphere and atmosphere. Sediment microbial activity plays a major role in determining whether particulate organic carbon is recycled or buried. A diverse consortium of microorganisms that hydrolyze, ferment, and terminally oxidize organic compounds mediates anaerobic organic matter mineralization in anoxic sediments. Variable temperature regulation of the sequential processes, leading from the breakdown of complex particulate organic carbon to the production and subsequent consumption of labile, low-molecular weight, dissolved intermediates, could play a key role in controlling rates of overall organic carbon mineralization. We examined sediment organic carbon cycling in a sediment slurry and in flow through bioreactor experiments. The data show a variable temperature response of the microbial functional groups mediating organic matter mineralization in anoxic marine sediments, resulting in the temperature-driven decoupling of the production and consumption of organic intermediates. This temperature-driven decoupling leads to the accumulation of labile, low-molecular weight, dissolved organic carbon at low temperatures and low-molecular weight dissolved organic carbon limitation of terminal metabolism at higher temperatures.

Bacterial abundance and composition in marine sediments beneath the Ross Ice Shelf, Antarctica.

PubMed

Carr, S A; Vogel, S W; Dunbar, R B; Brandes, J; Spear, J R; Levy, R; Naish, T R; Powell, R D; Wakeham, S G; Mandernack, K W

2013-07-01

Marine sediments of the Ross Sea, Antarctica, harbor microbial communities that play a significant role in the decomposition, mineralization, and recycling of organic carbon (OC). In this study, the cell densities within a 153-cm sediment core from the Ross Sea were estimated based on microbial phospholipid fatty acid (PLFA) concentrations and acridine orange direct cell counts. The resulting densities were as high as 1.7 × 10⁷ cells mL⁻¹ in the top ten centimeters of sediments. These densities are lower than those calculated for most near-shore sites but consistent with deep-sea locations with comparable sedimentation rates. The δ¹³C measurements of PLFAs and sedimentary and dissolved carbon sources, in combination with ribosomal RNA (SSU rRNA) gene pyrosequencing, were used to infer microbial metabolic pathways. The δ¹³C values of dissolved inorganic carbon (DIC) in porewaters ranged downcore from -2.5‰ to -3.7‰, while δ¹³C values for the corresponding sedimentary particulate OC (POC) varied from -26.2‰ to -23.1‰. The δ¹³C values of PLFAs ranged between -29‰ and -35‰ throughout the sediment core, consistent with a microbial community dominated by heterotrophs. The SSU rRNA gene pyrosequencing revealed that members of this microbial community were dominated by β-, δ-, and γ-Proteobacteria, Actinobacteria, Chloroflexi and Bacteroidetes. Among the sequenced organisms, many appear to be related to known heterotrophs that utilize OC sources such as amino acids, oligosaccharides, and lactose, consistent with our interpretation from δ¹³CPLFA analysis. Integrating phospholipids analyses with porewater chemistry, δ¹³CDIC and δ¹³CPOC values and SSU rRNA gene sequences provides a more comprehensive understanding of microbial communities and carbon cycling in marine sediments, including those of this unique ice shelf environment. © 2013 John Wiley & Sons Ltd.

Carotenoid diagenesis in recent marine sediments. I. The Peru continental shelf (15/sup 0/S, 75/sup 0/W)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Repeta, D.J.; Gagosian, R.B.

1987-04-01

The authors report here the distribution of carotenoids in Peru marine surface sediments, including partial identification of 37 pigments, 33 of which have not been previously reported to occur in marine sediments. Their analysis demonstrates that zooplanktonic crustacea, diatoms, dinoflagellates, cryptomonads, purple nonsulfur photosynthetic bacteria, and unidentified species of photosynthetic bacteria are contributors to sedimentary organic matter. Fucoxanthin, fucoxanthinol, diadinoxanthin, peridinin and peridininol, the principal carotenoids of diatoms and dinoflagellates observed in sediment traps, are nearly absent from their sample, even though these phytoplankton are the primary source of organic matter. They attribute this to the presence of 5,6 epoxidesmore » in these pigments, a feature which causes rapid cleavage of the polyene and fragmentation to low molecular weight compounds.« less

Growth and survival of three marine invertebrate species in sediments from the Hudson-Raritan estuary, New York

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rice, C.A.; Plesha, P.D.; Casillas, E.

1995-11-01

Sediments in the Hudson-Raritan estuary are known to contain high concentrations of anthropogenic contaminants, and marine organisms from this region exhibit numerous contaminant-related effects. To assess the pattern of sediment toxicity in depositional areas of this region, and to compare lethal and sublethal end points for different bioassay organisms, three benthic marine invertebrate species were exposed to sediments from 17 sites in the Hudson-Raritan estuary. Growth and mortality of the polychaete Armandia brevis and the sand dollar Dendraster excentricus were measured in all 17 sediments, while mortality and reburial ability of the amphipod Rhepoxinius abronius were assessed in nine sediments.more » Growth of polychaetes was determined by measuring the difference in weight after a 20-d exposure, whereas growth of sand dollars was assessed by measuring the difference in length and weight after a 28-d exposure. Amphipod mortality and reburial tests were conducted using the standard 10-d sediment bioassay. Significant growth reduction of polychaetes and sand dollars occurred in 11 of 17, and 3 of 17 sediments, respectively. Polychaete weight and sand dollar length correlated inversely and significantly with total sediment concentration of polycyclic aromatic hydrocarbons, polychlorinated biphenyls, and some selected elements. In contrast, significant mortality of polychaetes and amphipods occurred in 1 of 17 and 2 of 9 sediments, respectively, and impaired reburial ability of amphipods was not observed. Results of this study demonstrate that sediment contamination at depositional sites with the Hudson-Raritan estuary has potential to cause deleterious biological effects in indigenous benthic organisms. In addition, sublethal growth bioassays using polychaetes and sand dollars appear to be more sensitive in measuring the effects of sediment contamination than does the mortality-based bioassay using the amphipod Rhepoxinius abronius.« less

High Bacterial Diversity in Permanently Cold Marine Sediments

PubMed Central

Ravenschlag, Katrin; Sahm, Kerstin; Pernthaler, Jakob; Amann, Rudolf

1999-01-01

A 16S ribosomal DNA (rDNA) clone library from permanently cold marine sediments was established. Screening 353 clones by dot blot hybridization with group-specific oligonucleotide probes suggested a predominance of sequences related to bacteria of the sulfur cycle (43.4% potential sulfate reducers). Within this fraction, the major cluster (19.0%) was affiliated with Desulfotalea sp. and other closely related psychrophilic sulfate reducers isolated from the same habitat. The cloned sequences showed between 93 and 100% similarity to these bacteria. Two additional groups were frequently encountered: 13% of the clones were related to Desulfuromonas palmitatis, and a second group was affiliated with Myxobacteria spp. and Bdellovibrio spp. Many clones (18.1%) belonged to the γ subclass of the class Proteobacteria and were closest to symbiotic or free-living sulfur oxidizers. Probe target groups were further characterized by amplified rDNA restriction analysis to determine diversity within the groups and within the clone library. Rarefaction analysis suggested that the total diversity assessed by 16S rDNA analysis was very high in these permanently cold sediments and was only partially revealed by screening of 353 clones. PMID:10473405

The Deposition and Accumulation of Microplastics in Marine Sediments and Bottom Water from the Irish Continental Shelf.

PubMed

Martin, Jake; Lusher, Amy; Thompson, Richard C; Morley, Audrey

2017-09-07

Microplastics are widely dispersed throughout the marine environment. An understanding of the distribution and accumulation of this form of pollution is crucial for gauging environmental risk. Presented here is the first record of plastic contamination, in the 5 mm-250 μm size range, of Irish continental shelf sediments. Sixty-two microplastics were recovered from 10 of 11 stations using box cores. 97% of recovered microplastics were found to reside shallower than 2.5 cm sediment depth, with the area of highest microplastic concentration being the water-sediment interface and top 0.5 cm of sediments (66%). Microplastics were not found deeper than 3.5 ± 0.5 cm. These findings demonstrate that microplastic contamination is ubiquitous within superficial sediments and bottom water along the western Irish continental shelf. Results highlight that cores need to be at least 4-5 cm deep to quantify the standing stock of microplastics within marine sediments. All recovered microplastics were classified as secondary microplastics as they appear to be remnants of larger items; fibres being the principal form of microplastic pollution (85%), followed by broken fragments (15%). The range of polymer types, colours and physical forms recovered suggests a variety of sources. Further research is needed to understand the mechanisms influencing microplastic transport, deposition, resuspension and subsequent interactions with biota.

Etude de la performance des radars hautes-frequences CODAR et WERA pour la mesure des courants marins en presence partielle de glace de mer

NASA Astrophysics Data System (ADS)

Kamli, Emna

Les radars hautes-frequences (RHF) mesurent les courants marins de surface avec une portee pouvant atteindre 200 kilometres et une resolution de l'ordre du kilometre. Cette etude a pour but de caracteriser la performance des RHF, en terme de couverture spatiale, pour la mesure des courants de surface en presence partielle de glace de mer. Pour ce faire, les mesures des courants de deux radars de type CODAR sur la rive sud de l'estuaire maritime du Saint-Laurent, et d'un radar de type WERA sur la rive nord, prises pendant l'hiver 2013, ont ete utilisees. Dans un premier temps, l'aire moyenne journaliere de la zone ou les courants sont mesures par chaque radar a ete comparee a l'energie des vagues de Bragg calculee a partir des donnees brutes d'acceleration fournies par une bouee mouillee dans la zone couverte par les radars. La couverture des CODARs est dependante de la densite d'energie de Bragg, alors que la couverture du WERA y est pratiquement insensible. Un modele de fetch appele GENER a ete force par la vitesse du vent predite par le modele GEM d'Environnement Canada pour estimer la hauteur significative ainsi que la periode modale des vagues. A partir de ces parametres, la densite d'energie des vagues de Bragg a ete evaluee pendant l'hiver a l'aide du spectre theorique de Bretschneider. Ces resultats permettent d'etablir la couverture normale de chaque radar en absence de glace de mer. La concentration de glace de mer, predite par le systeme canadien operationnel de prevision glace-ocean, a ete moyennee sur les differents fetchs du vent selon la direction moyenne journaliere des vagues predites par GENER. Dans un deuxieme temps, la relation entre le ratio des couvertures journalieres obtenues pendant l'hiver 2013 et des couvertures normales de chaque radar d'une part, et la concentration moyenne journaliere de glace de mer d'autre part, a ete etablie. Le ratio des couvertures decroit avec l'augmentation de la concentration de glace de mer pour les deux types

Estimating rates of authigenic carbonate precipitation in modern marine sediments

NASA Astrophysics Data System (ADS)

Mitnick, E. H.; Lammers, L. N.; DePaolo, D. J.

2015-12-01

The formation of authigenic carbonate (AC) in marine sediments provides a plausible explanation for large, long-lasting marine δ13C excursions that does not require extreme swings in atmospheric O2 or CO2. AC precipitation during diagenesis is driven by alkalinity production during anaerobic organic matter oxidation and is coupled to sulfate reduction. To evaluate the extent to which this process contributes to global carbon cycling, we need to relate AC production to the geochemical and geomicrobiological processes and ocean chemical conditions that control it. We present a method to estimate modern rates of AC precipitation using an inversion approach based on the diffusion-advection-reaction equation and sediment pore fluid chemistry profiles as a function of depth. SEM images and semi-quantitative elemental map analyses provide further constraints. Our initial focus is on ODP sites 807 and 1082. We sum the diffusive, advective, and reactive terms that describe changes in pore fluid Ca and Mg concentrations due to precipitation of secondary carbonate. We calculate the advective and diffusive terms from the first and second derivatives of the Ca and Mg pore fluid concentrations using a spline fit to the data. Assuming steady-state behavior we derive net AC precipitation rates of up to 8 x 10-4 mmol m-2 y-1 for Site 807 and 0.6 mmol m-2 y-1 for Site 1082. Site 1082 sediments contain pyrite, which increases in amount down-section towards the estimated peak carbonate precipitation rate, consistent with sulfate-reduction-induced AC precipitation. However, the presence of gypsum and barite throughout the sediment column implies incomplete sulfate reduction and merits further investigation of the biogeochemical reactions controlling authigenesis. Further adjustments to our method could account for the small but non-negligible fraction of groundmass with a CaSO4 signature. Our estimates demonstrate that AC formation may represent a sizeable flux in the modern global

Determination of adsorption and desorption of DNA molecules on freshwater and marine sediments.

PubMed

Xue, J; Feng, Y

2018-06-01

Free DNA and its adsorption by sediment in the aquatic environment lead to ambiguity in the identification of recent faecal pollution sources. The goal of this study was to understand the mechanisms of DNA adsorption and desorption on aquatic sediment under various conditions using quantitative polymerase chain reaction (qPCR). Both raw sewage (RS) DNA and purified PCR product (PPP) were used in adsorption and desorption experiments; autoclaved freshwater and marine sediments served as sorbents. Thirty-six hours were needed for adsorption to reach equilibrium. More DNA was adsorbed on both sediments in stream water than in 5 mmol l -1 NaCl and DNA adsorption increased in the presence of Ca 2+ and Mg 2+ . Successive desorption experiments showed that between 5% and 22% of adsorbed DNA was desorbed. Organic matter and clay played a significant role in determining the DNA adsorption capacity on sediment. The data suggest the presence of multilayer adsorption. DNA molecules on sediments were mostly adsorbed through ligand binding rather than electrostatic binding. Quantitative polymerase chain reaction assays provide a better way to investigate the DNA adsorption and desorption mechanisms by sediment. DNA desorption can potentially complicate the outcomes of microbial source tracking studies. © 2018 The Society for Applied Microbiology.

Geographical distribution of shear wave anisotropy within marine sediments in the northwestern Pacific

NASA Astrophysics Data System (ADS)

Tonegawa, Takashi; Fukao, Yoshio; Fujie, Gou; Takemura, Shunsuke; Takahashi, Tsutomu; Kodaira, Shuichi

2015-12-01

In the northwestern Pacific, the elastic properties of marine sediments, including P-wave velocities ( Vp) and S wave velocities ( Vs), have recently been constrained by active seismic surveys. However, information on S anisotropy associated with the alignments of fractures and fabric remains elusive. To obtain such information, we used ambient noise records observed by ocean-bottom seismometers at 254 sites in the northwestern Pacific to calculate the auto-correlation functions for the S reflection retrieval from the top of the basement. For these S reflections, we measured differential travel times and polarized directions to reveal the potential geographical systematic distribution of S anisotropy. As a result, the observed differential times between fast and slow axes were at most 0.05 s. The fast polarization axes tend to align in the trench-parallel direction in the outer rise region. In particular, their directions changed systematically in accordance with the direction of the trench axis, which changes sharply across the junction of the Kuril and Japan trenches. We consider that a contributing factor for the obtained S anisotropy within marine sediments in the outer rise region is primarily aligned fractures due to the tensional stresses associated with the bending of the Pacific Plate. Moreover, numerical simulations conducted by using the three-dimensional (3D) finite difference method for isotropic and anisotropic media indicates that the successful extraction of S anisotropic information from the S reflection observed in this study is obtained from near-vertically propagating S waves due to extremely low Vs within marine sediments. In addition, we conducted an additional numerical simulation with a realistic velocity model to confirm whether S reflections below the basement can be extracted or not. The resultant auto-correlation function shows only S reflections from the top of the basement. It appears that such near-vertically propagating S waves

Thermal alteration experiments on organic matter from recent marine sediments in relation to petroleum genesis

NASA Technical Reports Server (NTRS)

Ishiwatari, R.; Ishiwatari, M.; Rohrback, B. G.; Kaplan, I. R.

1977-01-01

Three fractions of organic matter: lipid (benzene:methanol-extractable), humic acid (alkali-extractable) and kerogen (residue) were extracted from a young marine sediment (Tanner Basin, offshore southern California) and heated for different times (5-116 hr) and temperatures (150-410 C). The volatile (gases) and liquid products, as well as residual material, were then analyzed. On a weight basis, the lipid fraction produced 58% of the total identified n-alkanes, the kerogen fraction 41%, and the humic acid less than 1%. The volatiles produced by heating the lipid and humic acid fractions were largely CO2 and water, whereas those produced from heated kerogen also included methane, hydrogen gas and small amounts of C2-C4 hydrocarbons. A mechanism for hydrocarbon production due to the thermal alteration of organic constituents of marine sediment is discussed.

Occurrence of Priming in the Degradation of Lignocellulose in Marine Sediments.

PubMed

Gontikaki, Evangelia; Thornton, Barry; Cornulier, Thomas; Witte, Ursula

2015-01-01

More than 50% of terrestrially-derived organic carbon (terrOC) flux from the continents to the ocean is remineralised in the coastal zone despite its perceived high refractivity. The efficient degradation of terrOC in the marine environment could be fuelled by labile marine-derived material, a phenomenon known as "priming effect", but experimental data to confirm this mechanism are lacking. We tested this hypothesis by treating coastal sediments with 13C-lignocellulose, as a proxy for terrOC, with and without addition of unlabelled diatom detritus that served as the priming inducer. The occurrence of priming was assessed by the difference in lignocellulose mineralisation between diatom-amended treatments and controls in aerobic sediment slurries. Priming of lignocellulose degradation was observed only at the initial stages of the experiment (day 7) and coincided with overall high microbial activity as exemplified by total CO2 production. Lignocellulose mineralisation did not differ consistently between diatom treatments and control for the remaining experimental time (days 14-28). Based on this pattern, we hypothesize that the faster initiation of lignocellulose mineralisation in diatom-amended treatments is attributed to the decomposition of accessible polysaccharide components within the lignocellulose complex by activated diatom degraders. The fact that diatom-degraders contributed to lignocellulose degradation was also supported by the different patterns in 13C-enrichment of phospholipid fatty acids between treatments. Although we did not observe differences between treatments in the total quantity of respired lignocellulose at the end of the experiment, differences in timing could be important in natural ecosystems where the amount of time that a certain compound is subject to aerobic degradation before burial to deeper anoxic sediments may be limited.

Evaluation of the Polyethylene Reverse Sampler as a Dosing System in Marine Phase II Whole Sediment Toxicity Identification Evaluations (TIEs)

EPA Science Inventory

Contaminated marine sediments can cause acute and chronic impairments to benthic organisms. Nonionic organic contaminants (NOCs) are often a primary cause of impairment. Toxicity Identification Evaluations (TIEs) are used to identify chemicals causing toxicity in sediments. Ph...

Flavins in Coastal Marine Sediments: New Perspectives on Diagenetic Electron Transfer

NASA Astrophysics Data System (ADS)

Monteverde, D.; Berelson, W.; Baronas, J. J.; Sanudo-Wilhelmy, S. A.

2016-02-01

Coastal marine sediments play a critical role in the global cycling of metals and nutrients, many of which undergo diagenetic alteration. Central to these transformations are redox reactions where electron-rich organic matter is oxidized via transfer to terminal electron acceptors (NO3-, MnOx, FeOx, SO42-). The flavins (flavin adenine dinucleotide [FAD], flavin mononucleotide [FMN], and riboflavin [B2]) are microbially synthesized organic coenzymes that perform both single and double electron transfer and are known to mediate reduction of insoluble metal oxides. Culture experiments have found high rates of flavin excretion in metal-reducing Shewanella and Geobacter species, however environmental measurements of these highly labile molecules have not been previously reported. Here we present porewater measurements of FAD, FMN, and B2 from San Pedro Basin. This California Borderland basin is silled, suboxic, 900 m deep, and experiences high sedimentation. Flavin concentrations ranged from pico- (FAD: 0- 60 pM; B2: 40 - 90 pM) to nanomolar (FMN: 0.4 - 1.2 nM). The concentration cascade of FMN>B2>FAD fits well within culture experiments. Interestingly, profiles of all three flavins show a near linear increase with depth from 0-30 cm and a relatively steady concentration from 30-45 cm, supporting likely in situ production. Additionally, the flavins showed a negative correlation with dissolved Fe (R2 = 0.7 for FMN, 0.8 for FAD, and 0.9 for B2), which decreased linearly with depth from 160µM to 65µM. We discuss hypothesized mechanisms controlling flavin concentrations based on a suite of sediment geochemical parameters (dissolved Fe, Mn, TCO2, δ13C, NH3, DOM, and SO42-) as well as implications for microbial redox syntrophy. These data provide a critical link between the extensive culture-based mechanistic understanding of flavin function and the sedimentary environment. Furthermore, these results demonstrate that flavins likely serve as a significant electron transfer

INFLUENCE OF SOOT CARBON ON THE BIOACCULUMATION OF SEDIMENT-BOUND POLYCYCLIC AROMATIC HYDROCARBONS BY MARINE BENTHIC INVERTEBRATES: AN INTERSPECIES COMPARISON

EPA Science Inventory

The sorption of polycyclic aromatic hydrocarbons (PAHs) to soot carbon in marine sediments has been hypothesized to reduce PAH bioavailability. This hypothesis was tested for eight species of marine benthic invertebrates (four polychaete worms, Clymenella torquata, Nereis virens,...

Sedimentation: Potential Biological Effects of Dredging Operations in Estuarine and Marine Environments

DTIC Science & Technology

2005-05-01

seagrass habitat dominated by Thalassia testudinum in Florida has also been linked to poor water quality, including increased turbidity and nutrient loading...1973) found that construction of a canal that temporarily covered turtle grass, Thalassia testudinum, with up to 10 cm of sediment, killed the leaves...shoot demographic characteristics and population dynamics in Thalassia testudinum," Marine Ecology Progress Series 110, 59-66. Ellison, J. C. (1999

EXPLORATORY ANALYSIS OF THE EFFECTS OF PARTICULATE CHARACTERISTICS ON THE VARIATION IN PARTITIONING OF NONPOLAR ORGANIC CONTAMINANTS TO MARINE SEDIMENTS

EPA Science Inventory

The partitioning of nonpolar organic contaminants to marine sediments is considered to be controlled by the amount of organic carbon present. However, several studies propose that other characteristics of sediments may affect the partitioning of contaminants. For this exploratory...

Redox effects on the microbial degradation of refractory organic matter in marine sediments

NASA Astrophysics Data System (ADS)

Reimers, Clare E.; Alleau, Yvan; Bauer, James E.; Delaney, Jennifer; Girguis, Peter R.; Schrader, Paul S.; Stecher, Hilmar A.

2013-11-01

Microbially mediated reduction-oxidation (redox) reactions are often invoked as being the mechanisms by which redox state influences the degradation of sedimentary organic matter (OM) in the marine environment. To evaluate the effects of elevated, oscillating and reduced redox potentials on the fate of primarily aged, mineral-adsorbed OM contained in continental shelf sediments, we used microbial fuel cells to control redox state within and around marine sediments, without amending the sediments with reducing or oxidizing substances. We subsequently followed electron fluxes in the redox elevated and redox oscillating treatments, and related sediment chemical, isotopic and bacterial community changes to redox conditions over a 748-day experimental period. The electron fluxes of the elevated and oscillating redox cells were consistent with models of organic carbon (OC) oxidation with time-dependent first-order rate constants declining from 0.023 to 0.005 y-1, in agreement with rate constants derived from typical OC profiles and down core ages of offshore sediments, or from sulfate reduction rate measurements in similar sediments. Moreover, although cumulative electron fluxes were higher in the continuously elevated redox treatment, incremental rates of electron harvesting in the two treatments converged over the 2 year experiment. These similar rates were reflected in chemical indicators of OM metabolism such as dissolved OC and ammonia, and particulate OC concentrations, which were not significantly different among all treatments and controls over the experimental time-scale. In contrast, products of carbonate and opal dissolution and metal mobilization showed greater enrichments in sediments with elevated and oscillating redox states. Microbial community composition in anode biofilms and surrounding sediments was assessed via high-throughput 16S rRNA gene sequencing, and these analyses revealed that the elevated and oscillatory redox treatments led to the

APPLICATION OF COMPUTER-AIDED TOMOGRAPHY TO VISUALIZE AND QUANTIFY BIOGENIC STRUCTURES IN MARINE SEDIMENTS

EPA Science Inventory

We used computer-aided tomography (CT) for 3D visualization and 2D analysis of

marine sediment cores from 3 stations (at 10, 75 and 118 m depths) with different environmental

impact. Biogenic structures such as tubes and burrows were quantified and compared among st...

Use of neutralized industrial residue to stabilize trace elements (Cu, Cd, Zn, As, Mo, and Cr) in marine dredged sediment from South-East of France.

PubMed

Taneez, Mehwish; Marmier, Nicolas; Hurel, Charlotte

2016-05-01

Management of marine dredged sediments polluted with trace elements is prime issue in the French Mediterranean coast. The polluted sediments possess ecological threats to surrounding environment on land disposal. Therefore, stabilization of contaminants in multi-contaminated marine dredged sediment is a promising technique. Present study aimed to assess the effect of gypsum neutralized bauxaline(®) (bauxite residue) to decrease the availability of pollutants and inherent toxicity of marine dredged sediment. Bauxaline(®), (alumia industry waste) contains high content of iron oxide but its high alkalinity makes it not suitable for the stabilization of all trace elements from multi-contaminated dredged sediments. In this study, neutralized bauxaline(®) was prepared by mixing bauxaline(®) with 5% of plaster. Experiments were carried out for 3 months to study the effect of 5% and 20% amendment rate on the availability of Cu, Cd, Zn, As, Mo, and Cr. Trace elements concentration, pH, EC and dissolved organic carbon were measured in all leachates. Toxicity of leachates was assessed against marine rotifers Brachionus plicatilis. The Results showed that both treatments have immobilization capacity against different pollutants. Significant stabilization of contaminants (Cu, Cd, Zn) was achieved with 20% application rate whereas As, Mo, and Cr were slightly stabilized. Toxicity results revealed that leachates collected from treated sediment were less toxic than the control sediment. These results suggest that application of neutralized bauxaline(®) to dredged sediment is an effective approach to manage large quantities of dredged sediments as well as bauxite residue itself. Copyright © 2016 Elsevier Ltd. All rights reserved.

Variations in sediment texture on the northern Monterey Bay National Marine Sanctuary continental shelf

USGS Publications Warehouse

Edwards, B.D.

2002-01-01

The storm-protected continental shelf of Monterey Bay, part of the Monterey Bay National Marine Sanctuary, north-central California, is subject to abundant, episodic sediment input from fluvial sources. North of Monterey Bay, conditions of reduced sediment supply combined with the exposed nature of the shelf provide an effective laboratory for studying the contrasting effects of storm- versus fluvial-dominated conditions on modern sedimentation. Textural analyses performed on surface sediment samples collected from more than 380 box cores and MultiCores??? document the existence of a clearly defined mud belt occupying the mid-shelf throughout the region. Inshore sands combined with these mid-shelf muds represent deposits from modern sedimentation processes. In Monterey Bay, where episodic fluvial input from winter storms dominates sedimentation, the mid-shelf mud belt extends across the shelf to the shelf break. North of Monterey Bay, where sediment loads are reduced and both oceanographic and storm processes dominate, the mid-shelf mud belt is bordered by relict sediments occupying the outer shelf. In the study area, mass accumulation rates established by radiochemical studies support the contention that storm-induced along-shelf processes result in northward transport of sediment within the mud belt. The continuity of transport, however, is interrupted by topographic highs which are barriers or inhibitors to sediment transport created by wrench-style tectonics associated with the San Andreas fault system.

Exploring Actinobacteria assemblages in coastal marine sediments under contrasted Human influences in the West Istria Sea, Croatia.

PubMed

Duran, Robert; Bielen, Ana; Paradžik, Tina; Gassie, Claire; Pustijanac, Emina; Cagnon, Christine; Hamer, Bojan; Vujaklija, Dušica

2015-10-01

The exploration of marine Actinobacteria has as major challenge to answer basic questions of microbial ecology that, in turn, will provide useful information to exploit Actinobacteria metabolisms in biotechnological processes. The ecological functions performed by Actinobacteria in marine sediments are still unclear and belongs to the most burning basic questions. The comparison of Actinobacteria communities inhabiting marine sediments that are under the influence of different contamination types will provide valuable information in the adaptation capacities of Actinobacteria to colonize specific ecological niche. In the present study, the characterization of different Actinobacteria assemblages according to contamination type revealed the ecological importance of Actinobacteria for maintaining both general biogeochemical functions through a "core" Actinobacteria community and specific roles associated with the presence of contaminants. Indeed, the results allowed to distinguish Actinobacteria genera and species operational taxonomic units (OTUs) able to cope with the presence of either (i) As, (ii) metals Ni, Fe, V, Cr, and Mn, or (iii) polycyclic aromatic hydrocarbons (PAHs) and toxic metals (Hg, Cd, Cu, Pb, and Zn). Such observations highlighted the metabolic capacities of Actinobacteria and their potential that should be taken into consideration and advantage during the implementation of bioremediation processes in marine ecosystems.

LA-ICP-MS as Tool for Provenance Analyses in Arctic Marine Sediments

NASA Astrophysics Data System (ADS)

Wildau, Antje; Garbe-Schönberg, Dieter

2015-04-01

The hydraulic transport of sediments is a major geological process in terrestrial and marine systems and is responsible for the loss, redistribution and accumulation of minerals. Provenance analyses are a powerful tool for assessing the origin and dispersion of material in ancient and modern fluvial and marine sediments. Provenance-specific heavy minerals (e.g., zircon, rutile, tourmaline) can therefore be used to provide valuable information on the formation of ore deposits (placer deposits), and the reconstruction of paleogeography, hydrology, climate conditions and developments. The application of provenances analyses for the latter reason is of specific interest, since there is need for research on the progressing climate change, and heavy minerals represent good proxies for the evaluation of recent and past changes in the climate. The study of these fine particles provides information about potential regional or long distance transport paths, glacial / ice drift and current flows, freezing and melting events as well as depositional centers for the released sediments. Classic methods applied for provenance analyses are mapping of the presence / absence of diagnostic minerals, their grain size distribution, modal mineralogy and the analysis of variations in ratio of two or more heavy minerals. Electron microprobe has been established to discover changes in mineral chemistry of individual mineral phases, which can indicate fluctuations or differences in the provenance. All these methods bear the potential of high errors that lower the validity of the provenance analyses. These are for example the misclassification of mineral species due to undistinguishable optical properties or the limitations in the detection / variations of trace elements using the election microprobe. For this case study, marine sediments from the Arctic Ocean have been selected to test if LA-ICP-MS can be established as a key technique for precise and reliable provenance analyses. The Laptev

The isotopic composition of authigenic chromium in anoxic marine sediments: A case study from the Cariaco Basin

NASA Astrophysics Data System (ADS)

Reinhard, Christopher T.; Planavsky, Noah J.; Wang, Xiangli; Fischer, Woodward W.; Johnson, Thomas M.; Lyons, Timothy W.

2014-12-01

Chromium (Cr) isotopes are an emerging proxy for tracking redox processes at the Earth's surface. However, there has been limited exploration of the Cr isotope record of modern and recent marine sediments. The basic inorganic chemistry of Cr suggests that anoxic marine basins should factor prominently in the global Cr cycle and that sediments deposited within anoxic basins may offer a valuable Cr isotope archive throughout Earth's history. Here, we present δ53Cr data from sediments of the Cariaco Basin, Venezuela-a 'type' environment for large, perennially anoxic basins with a relatively strong hydrological connection to the global oceans. We document a marked positive shift in bulk δ53Cr values following the termination of the Last Glacial Maximum, followed by relative stasis. Based on a suite of independent redox proxies, this transition marks a switch from oxic to persistently anoxic and sulfidic (euxinic) depositional conditions within the basin. We find good agreement between two independent approaches toward estimating the δ53Cr composition of authigenic Cr in euxinic Cariaco Basin sediments and that these estimates are very similar to the δ53Cr composition of modern open Atlantic Ocean seawater. These data, together with considerations of reaction kinetics and mass balance within the Cariaco Basin, are consistent with the hypothesis that anoxic marine settings can serve as a chemical archive of first-order trends in seawater δ53Cr composition. Additionally, the Cariaco Basin data suggest that there has been secular stability in the average δ53Cr value of Atlantic seawater over the last ∼15 kyr.

Textural analysis of marine sediments at the USGS Woods Hole Science Center; methodology and data on DVD

USGS Publications Warehouse

Poppe, Lawrence J.; Williams, S. Jeffress; Paskevich, Valerie F.

2006-01-01

Marine sediments off the eastern United States vary markedly in texture (i.e., the size, shape, composition, and arrangement of their grains) due to a complex geologic history. For descriptive purposes, however, it is typically most useful to classify these sediments according to their grain-size distributions. In 1962, the U.S. Geological Survey began a program to study the marine geology of the continental margin off the Atlantic coast of the United States. As part of this program and numerous subsequent projects, thousands of sediment grab samples and cores were collected and analyzed for grain size at the Woods Hole Science Center. USGS Open-File Report 2005-1001 (Poppe et al., 2005), available on DVD and online, describes the field methods used to collect marine sediment samples as well as the laboratory methods used to determine and characterize grain-size distributions, and presents these data in several formats that can be readily employed by interested parties. The report is divided into three sections. The first section discusses procedures and contains pictures of the equipment, analytical flow diagrams, video clips with voice commentary, classification schemes, useful forms and compiled and uncompiled versions of the data-acquisition and data-processing software with documentation. The second section contains the grain-size data for more than 23,000 analyses in two “flat-file” formats, a data dictionary, and color-coded browse maps. The third section provides a GIS data catalog of the available point, interpretive, and baseline data layers, with FGDC-compliant metadata to help users visualize the textural information in a geographic context.

Effect of temperature and salinity on phosphate sorption on marine sediments.

PubMed

Zhang, Jia-Zhong; Huang, Xiao-Lan

2011-08-15

Our previous studies on the phosphate sorption on sediments in Florida Bay at 25 °C in salinity 36 seawater revealed that the sorption capacity varies considerably within the bay but can be attributed to the content of sedimentary P and Fe. It is known that both temperature and salinity influence the sorption process and their natural variations are the greatest in estuaries. To provide useful sorption parameters for modeling phosphate cycle in Florida Bay, a systematic study was carried out to quantify the effects of salinity and temperature on phosphate sorption on sediments. For a given sample, the zero equilibrium phosphate concentration and the distribution coefficient were measured over a range of salinity (2-72) and temperature (15-35 °C) conditions. Such a suite of experiments with combinations of different temperature and salinity were performed for 14 selected stations that cover a range of sediment characteristics and geographic locations of the bay. Phosphate sorption was found to increase with increasing temperature or decreasing salinity and their effects depended upon sediment's exchangeable P content. This study provided the first estimate of the phosphate sorption parameters as a function of salinity and temperature in marine sediments. Incorporation of these parameters in water quality models will enable them to predict the effect of increasing freshwater input, as proposed by the Comprehensive Everglades Restoration Plan, on the seasonal cycle of phosphate in Florida Bay.

Influence of deglaciation on microbial communities in marine sediments off the coast of Svalbard, Arctic Circle.

PubMed

Park, Soo-Je; Park, Byoung-Joon; Jung, Man-Young; Kim, So-Jeong; Chae, Jong-Chan; Roh, Yul; Forwick, Matthias; Yoon, Ho-Il; Rhee, Sung-Keun

2011-10-01

Increases in global temperatures have been shown to enhance glacier melting in the Arctic region. Here, we have evaluated the effects of meltwater runoff on the microbial communities of coastal marine sediment located along a transect of Temelfjorden, in Svalbard. As close to the glacier front, the sediment properties were clearly influenced by deglaciation. Denaturing gradient gel electrophoresis profiles showed that the sediment microbial communities of the stations of glacier front (stations 188-178) were distinguishable from that of outer fjord region (station 176). Canonical correspondence analysis indicated that total carbon and calcium carbonate in sediment and chlorophyll a in bottom water were key factors driving the change of microbial communities. Analysis of 16S rRNA gene clone libraries suggested that microbial diversity was higher within the glacier-proximal zone (station 188) directly affected by the runoffs than in the outer fjord region. While the crenarchaeotal group I.1a dominated at station 176 (62%), Marine Benthic Group-B and other Crenarchaeota groups were proportionally abundant. With regard to the bacterial community, alpha-Proteobacteria and Flavobacteria lineages prevailed (60%) at station 188, whereas delta-Proteobacteria (largely sulfate-reducers) predominated (32%) at station 176. Considering no clone sequences related to sulfate-reducers, station 188 may be more oxic compared to station 176. The distance-wise compositional variation in the microbial communities is attributable to their adaptations to the sediment environments which are differentially affected by melting glaciers.

Anaerobic Methane-Oxidizing Microbial Community in a Coastal Marine Sediment: Anaerobic Methanotrophy Dominated by ANME-3.

PubMed

Bhattarai, Susma; Cassarini, Chiara; Gonzalez-Gil, Graciela; Egger, Matthias; Slomp, Caroline P; Zhang, Yu; Esposito, Giovanni; Lens, Piet N L

2017-10-01

The microbial community inhabiting the shallow sulfate-methane transition zone in coastal sediments from marine Lake Grevelingen (The Netherlands) was characterized, and the ability of the microorganisms to carry out anaerobic oxidation of methane coupled to sulfate reduction was assessed in activity tests. In vitro activity tests of the sediment with methane and sulfate demonstrated sulfide production coupled to the simultaneous consumption of sulfate and methane at approximately equimolar ratios over a period of 150 days. The maximum sulfate reduction rate was 5 μmol sulfate per gram dry weight per day during the incubation period. Diverse archaeal and bacterial clades were retrieved from the sediment with the majority of them clustered with Euryarchaeota, Thaumarcheota, Bacteroidetes, and Proteobacteria. The 16S rRNA gene sequence analysis showed that the sediment from marine Lake Grevelingen contained anaerobic methanotrophic Archaea (ANME) and methanogens as archaeal clades with a role in the methane cycling. ANME at the studied site mainly belong to the ANME-3 clade. This study provides one of the few reports for the presence of ANME-3 in a shallow coastal sediment. Sulfate-reducing bacteria from Desulfobulbus clades were found among the sulfate reducers, however, with very low relative abundance. Desulfobulbus has previously been commonly found associated with ANME, whereas in our study, ANME-3 and Desulfobulbus were not observed simultaneously in clusters, suggesting the possibility of independent AOM by ANME-3.

Comparative phosphorus sorption by marine sediments and agricultural soils in a tropical environment.

PubMed

Fox, Robert L; Fares, Ali; Wan, Y; Evensen, Carl I

2006-01-01

The influence of soil phosphorus (P) sources on P sorption characteristics of marine sediments was investigated for Pearl Harbor and off shore Molokai in Hawaii. Estuary sediments were sampled in seven locations; these represented different soils and on-shore activities. The soil samples included nine major soils that contributed sediment to the Harbor and coastal sediments near the island of Molokai. Sediment and soil samples were equilibrated for 6 days in 0.01 M CaCl(2) solution and synthetic seawater containing differing amounts of P. Phosphorus sorption curves were constructed. The equilibrated solution P, with no P added, ranged from 0.01 to 0.2 mg L(-1); P sorption by sediments at standard solution concentration 0.2 mg L(-1), ranged from 0 to 230 mg kg(-1). Sediment P sorption corresponded closely with soil sorption characteristics. Soils contributing sediments to the west reach of Pearl Harbor are highly weathered Oxisols with high standard P sorption values while those in the southeast of the Harbor were Vertisols and Mollisols which sorb little P. The influence of source materials on sediment P sorption was also observed for off-shore sediments near Molokai. Sediments serve as both source and sink for P in Pearl Harbor and in this role can be a stabilizing influence on P concentration in the water column. Phosphorus sorption curves in conjunction with water quality data can help to understand P dynamics between sediments and the water column and help evaluate concerns about P loading to a water body. For Pearl Harbor, solution P in equilibrium with sediments from the Lochs was 0.021 mg L(-1); a value unlikely to produce an algal bloom. (Measured total P in the water columns (mean) was 0.060.).

Assessment of radionuclides and heavy metals in marine sediments along the Upper Gulf of Thailand

NASA Astrophysics Data System (ADS)

Khuntong, S.; Phaophang, C.; Sudprasert, W.

2015-05-01

Due to the Fukushima Daiichi nuclear disaster in 2011 and the development of nuclear power plant in neighboring countries such as Vietnam in the near future, radionuclide assessment in marine sediment during 2010 - 2011 may be useful as background levels for radiation protection in Thailand. Marine sediments (10 samples) were collected approximately 1 km away from the coastline along Chonburi to Pattaya, Chonburi Province. The sediments were ground and sieved through 2-mm test sieve after air drying. Radionuclides were measured with a gamma spectrometer equipped with a well-calibrated HPGe detector. The samples were prepared in the same geometry as the reference material. The optimal counting time was 60,000 - 80,000 s for statistical evaluation and uncertainties. No contamination of 137Cs as an artificial radionuclide was found. Naturally-occurring radionuclides including 238U, 232Th and 40K were found. The mean specific activities of 238U, 232Th and 40K were 44 ± 10, 59 ± 17 and 463 ± 94 Bq/kg in the rainy season (2010); 41 ± 6, 50 ± 9 and 484 ± 83 Bq/kg in the winter (2010), and 39 ± 6, 41 ± 7 and 472 ± 81 Bq/kg in the summer (2011), respectively. The mean specific activities were higher than the values in the UNSCEAR report of 35, 30 and 400 Bq/kg for 238U, 232Th and 40K, respectively. From the measured specific activities, the absorbed dose rate, radium equivalent activity, external hazard index and annual external effective dose rate were calculated in order to assess the health risk. No radiation hazards related to the radioactivity in the sediment were expected. The accumulation of radionuclides varied with the particle size and the organic matter content in the sediment. The accumulation of heavy metals showed similar results to that of the radionuclides in the sediment.

Nucleic acid based quantitative microbial community analysis in different marine and terrestrial sediments

NASA Astrophysics Data System (ADS)

Schippers, A.; Blazejak, A.; Köweker, G.

2009-12-01

Sub-seafloor sediments harbour over half of all prokaryotic cells on Earth. This immense cell number is calculated from numerous microscopic cell counts (AODC) in ODP sediment cores. Since AODC can not differentiate between living or dead cells, the population size of living microorganisms and the abundance of different prokaryotic groups are unknown. Recent molecular nucleic acid and biomarker analyses showed that a high proportion of the cells are alive and that the microbial communities of deep marine sediments harbour members of distinct, uncultured bacterial and archaeal lineages. The main objective of our project is the quantification of living prokaryotes in various sediments. Deep sediment samples from the Pacific and the Atlantic Oceans (ODP Legs 201 and 207, IODP Exp. 307 and 308), sediments from the Indian Ocean (RV Sonne 189-2) and the Black Sea (RV Meteor 51/4) as well as terrestrial Chesapeake Bay Sediments (ICDP) were analyzed using Catalyzed Reporter Deposition - Fluorescence In Situ Hybridisation (CARD - FISH) and quantitative, real-time PCR (Q-PCR), targeting either the 16S rRNA gene or the functional genes dsrA, mcrA and aprA to quantify microorganisms of various phylogenetic or physiological groups (e.g. JS1 cluster and Chloroflexi). At all sediment sites, cell numbers decreased with depth, however, the abundance of particular microbial groups varied at different sites and depths. The results indicate that global estimates of the deep biosphere should be reconsidered.

Nitrogen and phosphorus treatment of marine wastewater by a laboratory-scale sequencing batch reactor with eco-friendly marine high-efficiency sediment.

PubMed

Cho, Seonghyeon; Kim, Jinsoo; Kim, Sungchul; Lee, Sang-Seob

2017-06-22

We screened and identified a NH 3 -N-removing bacterial strain, Bacillus sp. KGN1, and a [Formula: see text] removing strain, Vibrio sp. KGP1, from 960 indigenous marine isolates from seawater and marine sediment from Tongyeong, South Korea. We developed eco-friendly high-efficiency marine sludge (eco-HEMS), and inoculated these marine bacterial strains into the marine sediment. A laboratory-scale sequencing batch reactor (SBR) system using the eco-HEMS for marine wastewater from land-based fish farms improved the treatment performance as indicated by 88.2% removal efficiency (RE) of total nitrogen (initial: 5.6 mg/L) and 90.6% RE of total phosphorus (initial: 1.2 mg/L) under the optimal operation conditions (food and microorganism (F/M) ratio, 0.35 g SCOD Cr /g mixed liquor volatile suspended solids (MLVSS)·d; dissolved oxygen (DO) 1.0 ± 0.2 mg/L; hydraulic retention time (HRT), 6.6 h; solids retention time (SRT), 12 d). The following kinetic parameters were obtained: cell yield (Y), 0.29 g MLVSS/g SCOD Cr ; specific growth rate (µ), 0.06 d -1 ; specific nitrification rate (SNR), 0.49 mg NH 3 -N/g MLVSS·h; specific denitrification rate (SDNR), 0.005 mg [Formula: see text]/g MLVSS·h; specific phosphorus uptake rate (SPUR), 0.12 mg [Formula: see text]/g MLVSS·h. The nitrogen- and phosphorus-removing bacterial strains comprised 18.4% of distribution rate in the microbial community of eco-HEMS under the optimal operation conditions. Therefore, eco-HEMS effectively removed nitrogen and phosphorus from highly saline marine wastewater from land-based fish farms with improving SNR, SDNR, and SPUR values in more diverse microbial communities. DO: dissolved oxygen; Eco-HEMS: eco-friendly high efficiency marine sludge; F/M: food and microorganism ratio; HRT: hydraulic retention time; ML(V)SS: mixed liquor (volatile) suspended solids; NCBI: National Center for Biotechnology Information; ND: not determined; qPCR: quantitative real-time polymerase

The Surface of Venus is Saturated With Ancient Impact Structures, and its Plains are Marine Sediments

NASA Astrophysics Data System (ADS)

Hamilton, W. B.

2009-05-01

Conventional interpretations of Venus are forced to fit dubious pre-Magellan conjectures that the planet is as active internally as Earth and preserves no ancient surface features. Plate tectonics obviously does not operate, so it is commonly assumed that the surface must record other endogenic processes, mostly unique to Venus. Imaginative systems of hundreds of tiny to huge rising and sinking plumes and diapirs are invoked. That much of the surface in fact is saturated with overlapping large circular depressions with the morphology of impact structures is obscured by postulating plume origins for selected structures and disregarding the rest. Typical structures are rimmed circular depressions, often multiring, with lobate debris aprons; central peaks are common. Marine-sedimentation features are overlooked because dogma deems the plains to be basalt flows despite their lack of source volcanoes and fissures. The unearthly close correlation between geoid and topography at long to moderate wavelengths requires, in conventional terms, dynamic maintenance of topography by up and down plumes of long-sustained precise shapes and buoyancy. A venusian upper mantle much stronger than that of Earth, because it is cooler or poorer in volatiles, is not considered. (The unearthly large so-called volcanoes and tessera plateaus often are related to rimmed circular depressions and likely are products of impact fluidization and melting.) Plains-saturating impact structures (mostly more obvious in altimetry than backscatter) with diameters of hundreds of km are superimposed as cookie-cutter bites, are variably smoothed and smeared by apparent submarine impact and erosion, and are differentially buried by sediments compacted into them. Marine- sedimentation evidence includes this compaction; long sinuous channels and distributaries with turbidite- channel characteristics and turbidite-like lobate flows (Jones and Pickering, JGSL 2003); radar-smooth surfaces and laminated aspect in

Electric coupling between distant nitrate reduction and sulfide oxidation in marine sediment

PubMed Central

Marzocchi, Ugo; Trojan, Daniela; Larsen, Steffen; Louise Meyer, Rikke; Peter Revsbech, Niels; Schramm, Andreas; Peter Nielsen, Lars; Risgaard-Petersen, Nils

2014-01-01

Filamentous bacteria of the Desulfobulbaceae family can conduct electrons over centimeter-long distances thereby coupling oxygen reduction at the surface of marine sediment to sulfide oxidation in deeper anoxic layers. The ability of these cable bacteria to use alternative electron acceptors is currently unknown. Here we show that these organisms can use also nitrate or nitrite as an electron acceptor thereby coupling the reduction of nitrate to distant oxidation of sulfide. Sulfidic marine sediment was incubated with overlying nitrate-amended anoxic seawater. Within 2 months, electric coupling of spatially segregated nitrate reduction and sulfide oxidation was evident from: (1) the formation of a 4–6-mm-deep zone separating sulfide oxidation from the associated nitrate reduction, and (2) the presence of pH signatures consistent with proton consumption by cathodic nitrate reduction, and proton production by anodic sulfide oxidation. Filamentous Desulfobulbaceae with the longitudinal structures characteristic of cable bacteria were detected in anoxic, nitrate-amended incubations but not in anoxic, nitrate-free controls. Nitrate reduction by cable bacteria using long-distance electron transport to get privileged access to distant electron donors is a hitherto unknown mechanism in nitrogen and sulfur transformations, and the quantitative importance for elements cycling remains to be addressed. PMID:24577351

Origin and transport of (238)U and (226)Ra in riverine, estuarine and marine sediments of the Krka River, Croatia.

PubMed

Cukrov, Neven; Mlakar, Marina; Cuculić, Vlado; Barisić, Delko

2009-06-01

Spatial distribution of (238)U and (226)Ra activities in sediment columns along the Krka River and estuary, were studied using gamma spectrometry. Markedly different (238)U and (226)Ra activities between riverine, estuarine and marine sediments were observed. Distribution of these radionuclides, as well as their anthropogenic and natural origin, was evaluated by activity measurements, taking into account sedimentation rates estimated by (137)Cs distribution in sediment columns. Naturally present (238)U and (226)Ra activities were highest in riverine and lowest in marine sediments. (238)U and (226)Ra activities in historic riverine sediments revealed anthropogenic influence from town of Knin, which diminished for 15-20% in 1990s due to warfare that caused stop of industrial, agricultural and transport activities. Drainage of the flysch material naturally elevates (238)U and (226)Ra activities in the vicinity of its inflow in the upper part of estuary. (238)U and (226)Ra from the phosphate ore discharge in the port of Sibenik did not spread further in estuary, which was also confirmed by (238)U and (226)Ra activities detected in Mytilus sp. mussels' tissue.

Phosphorus regeneration and burial in near-shore marine sediments (the Gulf of Trieste, northern Adriatic Sea)

NASA Astrophysics Data System (ADS)

Ogrinc, N.; Faganeli, J.

2006-05-01

According to bioassay studies and high dissolved nutrient N/P ratios in the seawater column, phosphorus (P) is thought to control marine productivity in the northern Adriatic Sea. P in near-shore marine sediments of the Gulf of Trieste, the northernmost part of the Adriatic Sea, was investigated using pore water P distributions, and benthic P flux studies under oxic and anoxic conditions. The data show that P regeneration is up to three-fold more extensive in sediments overlain by oxygen-depleted waters and proceeds in parallel with Fe and Mn enhanced benthic fluxes. It appears from the incubation experiments that degradation of sedimentary organic matter is the main contribution to the flux of P at the sediment-water interface, while the release of phosphate adsorbed on the iron oxide surface is of minor importance. It appears that about 50% of P in the Gulf of Trieste is retained within in the sediments, probably bonded to clay minerals and carbonate grains or precipitated as fluoroapatite. In these sediments total P (P tot) is preserved preferentially over organic C (C org). P regenerated from surficial sediments contributes about 1/3 of the P that is assimilated by benthic microalgae. The phytoplankton P requirement should be entirely supplied from fresh-water sources. These results suggest that oxygen depletion in coastal areas caused by eutrophication enhances P regeneration from sediments, providing the additional P necessary for increased biological productivity. The development of anoxic bottom waters in coastal areas enhances the recycling of P, exacerbating the nutrient requirement in the area. A geochemical record of P burial in a longer sedimentary sequence revealed an increasing trend of P tot and organic P (P org) contents occurring approximately 50 years BP (after 1950), probably due to increasing use of inorganic fertilizers and detergents in the area.

Metal fractionation in marine sediments acidified by enrichment of CO2: A risk assessment.

PubMed

de Orte, Manoela Romanó; Bonnail, Estefanía; Sarmiento, Aguasanta M; Bautista-Chamizo, Esther; Basallote, M Dolores; Riba, Inmaculada; DelValls, Ángel; Nieto, José Miguel

2018-06-01

Carbon-capture and storage is considered to be a potential mitigation option for climate change. However, accidental leaks of CO 2 can occur, resulting in changes in ocean chemistry such as acidification and metal mobilization. Laboratory experiments were performed to provide data on the effects of CO 2 -related acidification on the chemical fractionation of metal(loid)s in marine-contaminated sediments using sequential extraction procedures. The results showed that sediments from Huelva estuary registered concentrations of arsenic, copper, lead, and zinc that surpass the probable biological effect level established by international protocols. Zinc had the greatest proportion in the most mobile fraction of the sediment. Metals in this fraction represent an environmental risk because they are weakly bound to sediment, and therefore more likely to migrate to the water column. Indeed, the concentration of this metal was lower in the most acidified scenarios when compared to control pH, indicating probable zinc mobilization from the sediment to the seawater. Copyright © 2018 Elsevier Ltd. All rights reserved.

Biodegradation and mineralization of isotopically labeled TNT and RDX in anaerobic marine sediments.

PubMed

Ariyarathna, Thivanka; Vlahos, Penny; Smith, Richard W; Fallis, Stephen; Groshens, Thomas; Tobias, Craig

2017-05-01

The lack of knowledge on the fate of explosive compounds 2,4,6-trinitrotoluene (TNT) and hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX), particularly in marine ecosystems, constrains the application of bioremediation techniques in explosive-contaminated coastal sites. The authors present a comparative study on anaerobic biodegradation and mineralization of 15 N-nitro group isotopically labeled TNT and RDX in organic carbon-rich, fine-grained marine sediment with native microbial assemblages. Separate sediment slurry experiments were carried out for TNT and RDX at 23°C for 16 d. Dissolved and sediment-sorbed fractions of parent and transformation products, isotopic compositions of sediment, and mineralization products of the dissolved inorganic N pool ( 15 NH 4 + , 15 NO 3 - , 15 NO 2 - , and 15 N 2 ) were measured. The rate of TNT removal from the aqueous phase was faster (0.75 h -1 ) than that of RDX (0.37 h -1 ), and 15 N accumulation in sediment was higher in the TNT (13%) than the RDX (2%) microcosms. Mono-amino-dinitrotoluenes were identified as intermediate biodegradation products of TNT. Two percent of the total spiked TNT-N is mineralized to dissolved inorganic N through 2 different pathways: denitration as well as deamination and formation of NH 4 + , facilitated by iron and sulfate reducing bacteria in the sediments. The majority of the spiked TNT-N (85%) is in unidentified pools by day 16. Hexahydro-1,3,5-trinitro-1,3,5-triazine (10%) biodegrades to nitroso derivatives, whereas 13% of RDX-N in nitro groups is mineralized to dissolved inorganic N anaerobically by the end of the experiment. The primary identified mineralization end product of RDX (40%) is NH 4 + , generated through either deamination or mono-denitration, followed by ring breakdown. A reasonable production of N 2 gas (13%) was seen in the RDX system but not in the TNT system. Sixty-eight percent of the total spiked RDX-N is in an unidentified pool by day 16 and may include unquantified

In-situ geophysical measurements in marine sediments: Applications in seafloor acoustics and paleoceanography

NASA Astrophysics Data System (ADS)

Gorgas, Thomas Joerg

Acoustic in-situ sound speeds and attenuation were measured on the Eel River shelf, CA, with the Acoustic Lance between 5 and 15 kHz to 2.0 meters below seafloor (mbsf). A comparison with laboratory ultrasonic geoacoustic data obtained at 400 kHz on cored sediments showed faster in-situ and ultrasonic sound speeds in coarse-grained deposits in water depths to 60 m than in fine-grained deposits below that contour line. Ultrasonic attenuation was often greater than in-situ values and remained almost constant below 0.4 mbsf in these heterogeneous deposits. In-situ attenuation decreased with depth. These observations partly agree with results from other field studies, and with theoretical models that incorporate intergranular friction and dispersion from viscosity as main controls on acoustic wave propagation in marine sediments. Deviations among in-situ and laboratory acoustic data from the Eel Margin with theoretical studies were linked to scattering effects. Acoustic Lance was also deployed in homogeneous, fine-grained sediments on the inner shelf of SE Korea, where free gas was identified in late-September, but not in mid-September 1999. Free gas was evidenced by an abrupt decrease of in-situ sound speed and by characteristic changes in acoustic waveforms. These results suggest the presence of a gassy sediment layer as shallow as 2 mbsf along the 70 m bathymetry line, and was attributed to a variable abundance of free gas on short-term and/or small-regional scales on the SE Korea shelf. Bulk density variations in marine sediments obtained along the Walvis Ridge/Basin, SW Africa, at Ocean Drilling Program (ODP) Sites 1081 to 1084 were spectral-analyzed to compute high-resolution sedimentation rates (SRs) in both the time- and age domains by correctly identifying Milankovitch cycles (MCs). SRs for the ODP sites yielded age-depth models that often correlate positively with biostratigraphic data and with organic mass accumulation rates (MAR Corg), a proxy for

Mineralization of RDX-derived nitrogen to N2 via denitrification in coastal marine sediments.

PubMed

Smith, Richard W; Tobias, Craig; Vlahos, Penny; Cooper, Christopher; Ballentine, Mark; Ariyarathna, Thivanka; Fallis, Stephen; Groshens, Thomas J

2015-02-17

Hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) is a common constituent of military explosives. Despite RDX contamination at numerous U.S. military facilities and its mobility to aquatic systems, the fate of RDX in marine systems remains largely unknown. Here, we provide RDX mineralization pathways and rates in seawater and sediments, highlighting for the first time the importance of the denitrification pathway in determining the fate of RDX-derived N. (15)N nitro group labeled RDX ((15)N-[RDX], 50 atom %) was spiked into a mesocosm simulating shallow marine conditions of coastal Long Island Sound, and the (15)N enrichment of N2 (δ(15)N2) was monitored via gas bench isotope ratio mass spectrometry (GB-IRMS) for 21 days. The (15)N tracer data were used to model RDX mineralization within the context of the broader coastal marine N cycle using a multicompartment time-stepping model. Estimates of RDX mineralization rates based on the production and gas transfer of (15)N2O and (15)N2 ranged from 0.8 to 10.3 μmol d(-1). After 22 days, 11% of the added RDX had undergone mineralization, and 29% of the total removed RDX-N was identified as N2. These results demonstrate the important consideration of sediment microbial communities in management strategies addressing cleanup of contaminated coastal sites by military explosives.

Heat Stress Dictates Microbial Lipid Composition along a Thermal Gradient in Marine Sediments

PubMed Central

Sollich, Miriam; Yoshinaga, Marcos Y.; Häusler, Stefan; Price, Roy E.; Hinrichs, Kai-Uwe; Bühring, Solveig I.

2017-01-01

Temperature exerts a first-order control on microbial populations, which constantly adjust the fluidity and permeability of their cell membrane lipids to minimize loss of energy by ion diffusion across the membrane. Analytical advances in liquid chromatography coupled to mass spectrometry have allowed the detection of a stunning diversity of bacterial and archaeal lipids in extreme environments such as hot springs, hydrothermal vents and deep subsurface marine sediments. Here, we investigated a thermal gradient from 18 to 101°C across a marine sediment field and tested the hypothesis that cell membrane lipids provide a major biochemical basis for the bioenergetics of archaea and bacteria under heat stress. This paper features a detailed lipidomics approach with the focus on membrane lipid structure-function. Membrane lipids analyzed here include polar lipids of bacteria and polar and core lipids of archaea. Reflecting the low permeability of their ether-linked isoprenoids, we found that archaeal polar lipids generally dominate over bacterial lipids in deep layers of the sediments influenced by hydrothermal fluids. A close examination of archaeal and bacterial lipids revealed a membrane quandary: not only low permeability, but also increased fluidity of membranes are required as a unified property of microbial membranes for energy conservation under heat stress. For instance, bacterial fatty acids were composed of longer chain lengths in concert with higher degree of unsaturation while archaea modified their tetraethers by incorporation of additional methyl groups at elevated sediment temperatures. It is possible that these configurations toward a more fluidized membrane at elevated temperatures are counterbalanced by the high abundance of archaeal glycolipids and bacterial sphingolipids, which could reduce membrane permeability through strong intermolecular hydrogen bonding. Our results provide a new angle for interpreting membrane lipid structure

Provenance of Marine Sediment in the Gulf of Alaska, IODP Expedition 341: Links Between Sediment Derivation, Glacial Systems, and Exhumation of the Coastal Mountain Belts

NASA Astrophysics Data System (ADS)

Allen, W. K.; Dunn, C. A.; Enkelmann, E.; Ridgway, K.; Colliver, L.

2015-12-01

Provenance analysis of Neogene sand and diamict beds from marine boreholes drilled by the IODP Expedition 341 provides a marine sedimentary record of the interactions between tectonics, climate and sediment deposition along a glaciated convergent margin. The 341 boreholes represent a cross-margin transect that sampled the continental shelf, slope, and deep sea Surveyor Fan of the Gulf of Alaska. Our dataset currently consists of ~ 650 detrital zircons selected for double dating method utilizing both detrital zircon fission track (FT) and U-Pb analysis from sand and diamict beds, as well as zircon U-Pb geochronology and apatite FT from igneous and gneissic clasts. Detrital zircon U-Pb geochronology of sand records dominant peak ages of 53, 62, 70, and 98 Ma with minor populations of 117, 154, and 170 Ma. Most of these ages can be correlated to primary igneous sources in the Coast Plutonic Complex, the Chugach Metamorphic Complex, the plutonic rocks of Wrangellia, and the Sanak-Baranoff plutonic belt. All samples analyzed to date, covering a 10 Myr range, share nearly identical detrital zircon populations suggesting similar primary sediment sources and reworking of sediment in thrust belts and accretionary prisms along this convergent margin. Plutonic and gneissic clasts collected from the boreholes on the shelf have already been double dated. These clasts have general U-Pb zircon crystallization ages of 52-54 Ma and apatite fission track cooling ages of 10-12 Ma. These results, along with previous published studies, indicate that these clasts were derived from the Chugach Metamorphic Complex and were eroded and transported by the Bagley Ice Field and Bering Glacier. Future results using this approach should allow us to pinpoint which parts of the exhumed onshore ranges and which glacial systems provided sediment to marine environments in the Gulf of Alaska.

Toxicological effects of short-term resuspension of metal-contaminated freshwater and marine sediments.

PubMed

Fetters, Kyle J; Costello, David M; Hammerschmidt, Chad R; Burton, G Allen

2016-03-01

Sediments in navigation-dominated waterways frequently are contaminated with a variety of particle-associated pollutants and are subject to frequent short-term resuspension events. There is little information documenting whether resuspension of metal-contaminated sediments has adverse ecological effects on resident aquatic organisms. Using a novel laboratory approach, the authors examined the mobilization of Zn, Cu, Cd, Pb, Ni, and Cr during resuspension of 1 freshwater and 2 coastal marine sediments and whether resuspension and redeposition resulted in toxicity to model organisms. Sediment flux exposure chambers were used to resuspend metal-contaminated sediments from 1 site in Lake DePue, Illinois (USA), and 2 sites in Portsmouth Naval Shipyard, Maine (USA). Short-term (4-h) resuspension of sediment at environmentally relevant suspended particulate matter concentrations (<1 g/L) resulted in metal mobilization to water that was sediment and metal specific. Overall, the net release of metals from suspended particles was limited, likely because of scavenging by organic matter and Fe oxides that formed during sediment interaction with oxic water. Minimal toxicity to organisms (survival of Hyalella azteca and Daphnia magna; survival, growth, and tissue metal concentration of Neanthes arenaceodentata; bioluminescence of Pyrocystis lunula) was observed during 4-h exposure to resuspended sediments and during 4-d to 10-d post-exposure recovery periods in uncontaminated water. Redeposited suspended particles exhibited increased metal bioavailability and toxicity to H. azteca, highlighting the potential for adverse ecological impacts because of changes in metal speciation. It is important to consider interactions between organisms' life histories and sediment disturbance regimes when assessing risks to ecosystems. © 2015 SETAC.

Selected contributions from the 11th Gas in Marine Sediments International Conference of September 2012, Nice: an introduction

NASA Astrophysics Data System (ADS)

Pierre, Catherine; Imbert, Patrice; Mascle, Jean

2014-06-01

This Introduction presents an overview of selected contributions from the 11th Gas in Marine Sediments International Conference held on the 4-7 September 2012 in Nice, France, and published in this special issue of Geo-Marine Letters under the guest editorship of Catherine Pierre, Patrice Imbert and Jean Mascle. These cover fluid seepage dynamics at widely varying spatiotemporal scales in a giant buried caldera of the Caspian Sea, mud volcanoes and pockmarks in the Mediterranean and adjoining Gulf of Cadiz, as well as Lake Baikal, pockmarks of shallower waters along the Atlantic French coast and in Baltic Sea lagoons, deepwater pockmarks and cold seeps on the Norwegian margin and the Hikurangi Margin of New Zealand, asphalt seepage sites offshore southern California, and the tectonically controlled southern Chile forearc. We look forward to meeting all again at the 12th Gas in Marine Sediments conference scheduled for 1-6 September 2014 in Taipei, Taiwan.

Microbial colonization and degradation of polyethylene and biodegradable plastic bags in temperate fine-grained organic-rich marine sediments.

PubMed

Nauendorf, Alice; Krause, Stefan; Bigalke, Nikolaus K; Gorb, Elena V; Gorb, Stanislav N; Haeckel, Matthias; Wahl, Martin; Treude, Tina

2016-02-15

To date, the longevity of plastic litter at the sea floor is poorly constrained. The present study compares colonization and biodegradation of plastic bags by aerobic and anaerobic benthic microbes in temperate fine-grained organic-rich marine sediments. Samples of polyethylene and biodegradable plastic carrier bags were incubated in natural oxic and anoxic sediments from Eckernförde Bay (Western Baltic Sea) for 98 days. Analyses included (1) microbial colonization rates on the bags, (2) examination of the surface structure, wettability, and chemistry, and (3) mass loss of the samples during incubation. On average, biodegradable plastic bags were colonized five times higher by aerobic and eight times higher by anaerobic microbes than polyethylene bags. Both types of bags showed no sign of biodegradation during this study. Therefore, marine sediment in temperate coastal zones may represent a long-term sink for plastic litter and also supposedly compostable material. Copyright © 2016 Elsevier Ltd. All rights reserved.

Potential for heavy metal (copper and zinc) removal from contaminated marine sediments using microalgae and light emitting diodes

NASA Astrophysics Data System (ADS)

Kwon, Hyeong Kyu; Jeon, Jin Young; Oh, Seok Jin

2017-03-01

The effects of monochromatic (blue, yellow and red LED) and mixed wavelengths (fluorescent lamp) on the adsorption and absorption of Cu and Zn by Phaeodactylum tricornutum, Nitzschia sp., Skeletonema sp., and Chlorella vulgaris were investigated. In addition, we confirmed the potential of microalgae for phytoremediation of these heavy metals from contaminated marine sediment by using microcosm experiments that incorporated LEDs and semipermeable membrane (SPM) tube containing microalgae. Among the four microalgae, C. vulgaris grown under red LED exhibited the highest Cu and Zn removal with values of 17.5 × 10-15 g Cu/cell and 38.3 × 10-15 g Zn/cell, respectively. Thus, C. vulgaris could be a useful species for phytoremediation. In the microcosm experiments with SPM containing C. vulgaris, the highest Cu and Zn removal from sediment and interstitial water showed under red LED. Therefore, phytoremediation using LED and SPM tube containing microalgae could be utilized as an eco-friendly technique for remediating contaminated marine sediment.

New procedure for recovering extra- and intracellular DNA from marine sediment samples

NASA Astrophysics Data System (ADS)

Alawi, M.; Kallmeyer, J.

2012-12-01

Extracellular DNA (eDNA) is a ubiquitous biological compound in aquatic sediment and soil. Despite major methodological advances, analysis of DNA from sediment is still technically challenging, not just because of the co-elution of inhibitory substances, but also due to co-elution of extracellular DNA, which potentially leads to an overestimate of the actual diversity. Previous studies suggested that eDNA might play an important role in biogeochemical element cycling, horizontal gene transfer and stabilization of biofilm structures. Several protocols based on the precipitation of eDNA e.g. with CTAB and ethanol have already been published. However, using these methods we did not succeed in quantifying very low amounts of eDNA (e.g. <1μg eDNA/g dry wt) in marine sediment even when using DNA carriers like glycogen. Since the recovery of eDNA by precipitation strongly depends on its concentration, these previously published procedures are not adequate for deep biosphere sediment due to the low eDNA content. We have focused on the question whether eDNA could be a source of nitrogen and phosphorus for microbes in the subseafloor biosphere. Therefore we developed a new method for the (semi)-quantitative extraction of eDNA from sediment. The new extraction procedure is based on sequential washing of the sediment to remove simultaneously eDNA and microbial cells without lysing them. After separation of the cells by centrifugation, the eDNA was extracted from the supernatant and purified by adsorption onto a solid phase, followed by removal of the solids and subsequent elution of the pure eDNA. Intracellular DNA (iDNA) was extracted and purified from the cell pellet using a commercial DNA extraction kit. Additional to a very low detection limit and reproducible quantification, this new method allows separation and purification of both extracellular and intracellular DNA to an extent that inhibitors are removed and downstream applications like PCR can be performed. To

Estimating production and consumption of solid reactive Fe phases in marine sediments from concentration profiles

EPA Science Inventory

1D diffusion models may be used to estimate rates of production and consumption of dissolved metabolites in marine sediments, but are applied less often to the solid phase. Here we used a numerical inverse method to estimate solid phase Fe(III) and Fe(II) consumption and product...

Assessing bioavailability of DDT and metabolites in marine sediments using solid-phase microextraction with performance reference compounds.

PubMed

Bao, Lian-Jun; Jia, Fang; Crago, J; Zeng, Eddy Y; Schlenk, D; Gan, Jay

2013-09-01

Solid-phase microextraction (SPME) has often been used to estimate the freely dissolved concentration (Cfree ) of organic contaminants in sediments. A significant limitation in the application of SPME for Cfree measurement is the requirement for attaining equilibrium partition, which is often difficult for strongly hydrophobic compounds such as DDT. A method was developed using SPME with stable isotope-labeled analogues as performance reference compounds (PRCs) to measure Cfree of DDT and metabolites (DDTs) in marine sediments. Six (13) C-labeled or deuterated PRCs were impregnated into polydimethylsiloxane (PDMS) fiber before use. Desorption of PRCs from PDMS fibers and absorption of DDTs from sediment were isotropic in a range of sediments evaluated ex situ under well-mixed conditions. When applied to a historically contaminated marine sediment from a Superfund site, the PRC-SPME method yielded Cfree values identical to those found by using a conventional equilibrium SPME approach (Eq-SPME), whereas the time for mixing was reduced from 9 d to only 9 h. The PRC-SPME method was further evaluated against bioaccumulation of DDTs by Neanthes arenaceodentata in the contaminated sediment with or without amendment of activated carbon or sand. Strong correlations were consistently found between the derived equilibrium concentrations on the fiber and lipid-normalized tissue residues for DDTs in the worms. Results from the present study clearly demonstrated the feasibility of coupling PRCs with SPME sampling to greatly shorten sampling time, thus affording much improved flexibility in the use of SPME for bioavailability evaluation. Copyright © 2013 SETAC.

Assessing Bioavailability of DDT and Metabolites in Marine Sediments using Solid-Phase Microextraction with Performance Reference Compounds

PubMed Central

Bao, Lian-Jun; Jia, Fang; Crago, J.; Zeng, Eddy Y.; Schlenk, D.; Gan, Jay

2014-01-01

Solid-phase microextraction (SPME) has often been used to estimate the freely dissolved concentration (Cfree) of organic contaminants in sediments. A significant limitation in the application of SPME for Cfree measurement is the requirement for attaining equilibrium partition, which is often difficult for strongly hydrophobic compounds such as DDT. A method was developed using SPME with stable isotope-labeled analogues as performance reference compounds (PRCs) to measure Cfree of DDT and metabolites (DDTs) in marine sediments. Six 13C-labeled or deuterated PRCs were impregnated into polydimethylsiloxane (PDMS) fiber before use. Desorption of PRCs from PDMS fibers and absorption of DDTs from sediment were isotropic in a range of sediments evaluated ex situ under well-mixed conditions. When applied to a historically contaminated marine sediment from a Superfund site, the PRC-SPME method yielded Cfree values identical to those found by using a conventional equilibrium SPME approach (Eq-SPME), wherease the time for mixing was reduced from 9 d to only 9 h. The PRC-SPME method was further evaluated against bioaccumulation of DDTs by Neanthes arenaceodentata in the contaminated sediment with or without amendment of activated carbon or sand. Strong correlations were consistently found between the derived equilibrium concentrations on the fiber and lipid-normalized tissue residues for DDTs in the worms. Results from the present study clearly demonstrated the feasibility of coupling PRCs with SPME sampling to greatly shorten sampling time, thus affording much improved flexibility in the use of SPME for bioavailability evaluation. Environ Toxicol Chem 2013;32:1946–1953. PMID:23661411

Natural abundances of carbon isotopes in acetate from a coastal marine sediment

NASA Technical Reports Server (NTRS)

Blair, N. E.; Martens, C. S.; Des Marais, D. J.

1987-01-01

Measurements of the natural abundances of carbon isotopes were made in acetate samples isolated from the anoxic marine sediment of Cape Lookout Bight, North Carolina. The typical value of the total acetate carbon isotope ratio (delta 13C) was -16.1 +/- 0.2 per mil. The methyl and carboxyl groups were determined to be -26.4 +/- 0.3 and -6.0 +/- 0.3 per mil, respectively, for one sample. The isotopic composition of the acetate is thought to have resulted from isotopic discriminations that occurred during the cycling of that molecule. Measurements of this type, which have not been made previously in the natural environment, may provide information about the dominant microbial pathways in anoxic sediments as well as the processes that influence the carbon isotopic composition of biogenic methane from many sources.

Anodes Stimulate Anaerobic Toluene Degradation via Sulfur Cycling in Marine Sediments

PubMed Central

Daghio, Matteo; Vaiopoulou, Eleni; Patil, Sunil A.; Suárez-Suárez, Ana; Head, Ian M.

2015-01-01

Hydrocarbons released during oil spills are persistent in marine sediments due to the absence of suitable electron acceptors below the oxic zone. Here, we investigated an alternative bioremediation strategy to remove toluene, a model monoaromatic hydrocarbon, using a bioanode. Bioelectrochemical reactors were inoculated with sediment collected from a hydrocarbon-contaminated marine site, and anodes were polarized at 0 mV and +300 mV (versus an Ag/AgCl [3 M KCl] reference electrode). The degradation of toluene was directly linked to current generation of up to 301 mA m−2 and 431 mA m−2 for the bioanodes polarized at 0 mV and +300 mV, respectively. Peak currents decreased over time even after periodic spiking with toluene. The monitoring of sulfate concentrations during bioelectrochemical experiments suggested that sulfur metabolism was involved in toluene degradation at bioanodes. 16S rRNA gene-based Illumina sequencing of the bulk anolyte and anode samples revealed enrichment with electrocatalytically active microorganisms, toluene degraders, and sulfate-reducing microorganisms. Quantitative PCR targeting the α-subunit of the dissimilatory sulfite reductase (encoded by dsrA) and the α-subunit of the benzylsuccinate synthase (encoded by bssA) confirmed these findings. In particular, members of the family Desulfobulbaceae were enriched concomitantly with current production and toluene degradation. Based on these observations, we propose two mechanisms for bioelectrochemical toluene degradation: (i) direct electron transfer to the anode and/or (ii) sulfide-mediated electron transfer. PMID:26497463

Specification of Butyltins and Methyltins in Seawater and Marine Sediments by Hydride Derivatization and Atomic Absorption Detection.

DTIC Science & Technology

1985-07-01

Corporation . - P.F. Seligman . . Naval Ocean Systems Center fTW G. Vafa University of Hawaii Research Corporation P.M. Stang DEC 0 4 198 1: San Diego State...NAVFAC 032) under the Marine Environmental Quality Assessment Program. Released by Under authority of P. F. Seligman , Head S. Yamamoto, Head Marine...SEDIMENTS BY HYDRIDE DERIVATIZATION AND ATOMIC ABSORPTION DETECTION 12 PERSONAL AUJTHORWS) A. 0. Valkirs, P. F. Seligman , G. Vafa, P. M. Stang, V. Homner

Geochemical Evidence for Recent Hydrothermal Alteration of Marine Sediments in Mid-Okinawa Trough, Southwest Japan

NASA Astrophysics Data System (ADS)

Tanaka, A.; Abe, G.; Yamaguchi, K. E.

2014-12-01

Recent studies have shown that submarine hydrothermal system supports diverse microbial life. Bio-essential metals supporting such microbial communities were released from basalts by high-temperature water-rock interaction in deeper part of the oceanic crust and carried by submarine fluid flow. Its total quantity in global hydrothermal settings has been estimated to be on the order of ~1019 g/yr, which is surprisingly on the same order of the total river flows (Urabe et al., 2011). Therefore, it is important to explore how submarine river system works, i.e., to understand mechanism and extent of elemental transport, which should lead to understanding of the roles of hydrothermal circulation in oceanic crust in controlling elemental budget in the global ocean and geochemical conditions to support deep hot biosphere. 　We performed REE analysis of marine sediments influenced by submarine hydrothermal activity in Mid-Okinawa Trough. The sediment samples used in this study are from IODP site at Iheya North region and JADE site at Izena region. The samples show alternation between volcanic and clastic sediments. Hydrothermal fluids of this area contain elevated concentrations of volatile components such as H2, CO2, CH4, NH4+, and H2S, supporting diverse chemoautotrophic microbial community (Nakagawa et al., 2005). The purpose of this study is to examine the effect of hydrothermal activity on the REE signature of the sediments. Chondrite-normalized REE patterns of the samples show relative enrichment of light over heavy REEs, weak positive Ce anomalies, and variable degrees of negative Eu anomalies. The REE patterns suggest the sediments source was mainly basalt, suggesting insignificant input of continental materials. Negative Eu anomalies found in the IODP site become more pronounced with increasing depth, suggesting progressive increase of hydrothermal alteration where Eu was reductively dissolved into fluids by decomposition of feldspars. Contrary, at the JADE site

Influence of biogeochemical interactions on metal bioleaching performance in contaminated marine sediment.

PubMed

Fonti, Viviana; Dell'Anno, Antonio; Beolchini, Francesca

2013-09-15

Bioleaching strategies are still far from finding real applications in sediment clean-up, although metabolic mechanisms governing bioleaching processes have been deeply studied and can be considered well established. In this study, we carried out bioleaching experiments, using autotrophic and heterotrophic acidophilic bacteria strains, and worked with marine sediments characterized by different geochemical properties and metal concentrations and speciations. The solubilization efficiency of the metals was highly variable, with the highest for Zn (40%-76%) and the lowest for Pb (0%-7%). Our data suggest that the role of autotrophic Fe/S oxidizing bacteria is mainly associated with the production and re-cycling of leaching chemical species, mainly as protons and ferric ions. Metal solubilization appears to be more related to establishing environmental conditions that allow each metal or semimetal to remain stable in the solution phase. Thus, the maintenance of acid and oxidative conditions, the chemical behavior in aqueous environment of each metal species and the geochemical characteristics of sediment interact intimately to influence metal solubilization in site-specific and metal-specific way. Copyright © 2013 Elsevier Ltd. All rights reserved.

Implications of S1 tephra findings in Dead Sea and Tayma palaeolake sediments for marine reservoir age estimation and palaeoclimate synchronisation

NASA Astrophysics Data System (ADS)

Neugebauer, Ina; Wulf, Sabine; Schwab, Markus J.; Serb, Johanna; Plessen, Birgit; Appelt, Oona; Brauer, Achim

2017-08-01

Here we report on the first findings of a cryptotephra in the Holocene lacustrine sediment records of the Dead Sea and Tayma palaeolake (NW Arabian Peninsula). The major element glass composition of this rhyolitic tephra is identical to the distal 'S1' tephra layer identified in the Yammoûneh palaeolake (Lebanon), in a marine sediment record from the SE Levantine basin and in the Sodmein Cave archaeological site in Egypt. The S1 tephra corresponds to the early Holocene 'Dikkartın' dome eruption of the Erciyes Dağ volcano in central Anatolia (Turkey) and has been dated in the marine record at 8830 ± 140 cal yr BP. We present new age estimates of the S1 tephra based on radiocarbon dating of terrestrial plant remains and pollen concentrates revealing ages of 8939 ± 83 cal yr BP in the Dead Sea sediments and 9041 ± 254 cal yr BP in Tayma. The precise date from the Dead Sea allows refining the early Holocene marine reservoir age in the SE Levantine Sea to ca. 320 ± 50 years. Synchronisation of marine and terrestrial palaeoclimate records in the eastern Mediterranean region using the S1 tephra further suggests a time-transgressive expansion of the early Holocene humid period.

Trace element concentrations in surface estuarine and marine sediments along the Mississippi Gulf Coast following Hurricane Katrina.

PubMed

Warren, Crystal; Duzgoren-Aydin, Nurdan S; Weston, James; Willett, Kristine L

2012-01-01

Hurricanes are relatively frequent ecological disturbances that may cause potentially long-term impacts to the coastal environment. Hurricane Katrina hit the Mississippi Gulf Coast in August 2005, and caused a storm surge with the potential to change the trace element content of coastal surface sediments. In this study, surface estuarine and marine sediments were collected monthly following the storm from ten sites along the Mississippi Gulf Coast (Mobile Bay, Grand Bay Bayous Heron and Cumbest, Pascagoula, Ocean Springs, Biloxi Gulf, Back Biloxi Bay, Gulfport Gulf, Gulfport Courthouse Rd, and Gulfport Marina). Concentrations of V, Cr, Mn, Fe, Co, Ni, Zn, As, Cd, and Pb were measured by inductively coupled plasma-mass spectrometry to evaluate their temporal and spatial variations in the year following Hurricane Katrina. Sediments were characterized by pH, particle size distribution and total carbon and nitrogen content. Trace element contents of the sediments were determined in both <2 mm and <63 μm grain size fractions. Results revealed no significant temporal and spatial variability in trace element concentrations, in either size fraction. Potential ecological risk of the sediments was assessed by using NOAA SQuiRTs' guideline values; most concentrations remained below probable adverse effects guidelines to marine organisms suggesting that trace elements redistributed by Hurricane Katrina would not cause an adverse impact on resident organisms. Instead, the concentrations of trace elements were site-dependent, with specific contaminants relating to the use of the area prior to Hurricane Katrina.

Distribution of brominated flame retardants and dechloranes between sediments and benthic fish--A comparison of a freshwater and marine habitat.

PubMed

Sühring, Roxana; Busch, Friederike; Fricke, Nicolai; Kötke, Danijela; Wolschke, Hendrik; Ebinghaus, Ralf

2016-01-15

A total of 53 halogenated flame retardants (HFRs) were analysed in sediments, European eels and dabs from both freshwater and marine sampling stations in the German Bight and the river Elbe. Classic HFRs, such as polybrominated diphenylethers (PBDEs), were the highest concentrated HFRs in eels as well as in most dabs (apart from 1,2,5,6-tetrabromocyclooctane (TBCO)). In sediments, on the other hand, alternate BFRs and especially dechloranes dominated the contamination pattern. Dabs were still found to be statistically representative for the contamination patterns and relative magnitude in sediments from their respective habitats. Contamination patterns in eels seemed to be more driven by the contamination situation in the food chain or historical contamination of their habitat. Unsuspectedly the alternate flame retardant TBCO was found in comparably high concentrations (up to 12 ng g(-1) ww) in dabs from two sampling stations as well as in sediments from these stations (up to 1.2 ng g(-1) dw). It could not be detected in any other analysed fish or sediment samples, indicating a localised contamination source in the area. This study provides information on HFR contamination patterns and behaviour in both marine and freshwater sediments and their potential role as contamination source for benthic fish. Copyright © 2015 Elsevier B.V. All rights reserved.

Measurement and modeling of polychlorinated biphenyl bioaccumulation from sediment for the marine polychaete neanthes arenaceodentata and response to sorbent amendment

USGS Publications Warehouse

Janssen, E.M.-L.; Croteau, M.-N.; Luoma, S.N.; Luthy, R.G.

2010-01-01

Bioaccumulation rates of polychlorinated biphenyls (PCBs) for the marine polychaete Neanthes arenaceodentata were characterized, including PCB uptake rates from water and sediment, and the effect of sorbent amendment to the sediment on PCB bioavailability, organism growth, and lipid content. Physiological parameters were incorporated into a biodynamic model to predict contaminant uptake. The results indicate rapid PCB uptake from contaminated sediment and significant organism growth dilution during time-series exposure studies. PCB uptake from the aqueous phase accounted for less than 3% of the total uptake for this deposit-feeder. Proportional increase of gut residence time and assimilation efficiency as a consequence of the organism's growth was assessed by PCB uptake and a reactor theory model of gut architecture. Pulse-chase feeding and multilabeled stable isotope tracing techniques proved high sediment ingestion rates (i.e., 6?10 times of dry body weight per day) indicating that such deposit-feeders are promising biological indicators for sediment risk assessment. Activated carbon amendment reduced PCB uptake by 95% in laboratory experiments with no observed adverse growth effects on the marine polychaete. Biodynamic modeling explained the observed PCB body burdens for N. arenaceodentata, with and without sorbent amendment. ?? 2009 American Chemical Society.

A new marine sediment certified reference material (CRM) for the determination of persistent organic contaminants: IAEA-459.

PubMed

Tolosa, Imma; Cassi, Roberto; Huertas, David

2018-04-11

A new marine sediment certified reference material (IAEA 459) with very low concentrations (μg kg -1 ) for a variety of persistent organic contaminants (POPs) listed by the Stockholm Convention, as well as other POPs and priority substances (PSs) listed in many environmental monitoring programs was developed by the IAEA. The sediment material was collected from the Ham River estuary in South Korea, and the assigned final values were derived from robust statistics on the results provided by selected laboratories which demonstrated technical and quality competence, following the guidance given in ISO Guide 35. The robust mean of the laboratory means was assigned as certified values, for those compounds where the assigned value was derived from at least five datasets and its relative expanded uncertainty was less than 40% of the assigned value (most of the values ranging from 8 to 20%). All the datasets were derived from at least two different analytical techniques which have allowed the assignment of certified concentrations for 22 polychlorinated biphenyl (PCB) congeners, 6 organochlorinated (OC) pesticides, 5 polybrominated diphenyl ethers (PBDEs), and 18 polycyclic aromatic hydrocarbon (PAHs). Mass fractions of compounds that did not fulfill the criteria of certification are considered information values, which include 29 PAHs, 11 PCBs, 16 OC pesticides, and 5 PBDEs. The extensive characterization and associated uncertainties at concentration levels close to the marine sediment quality guidelines will make CRM 459 a valuable matrix reference material for use in marine environmental monitoring programs.

Microplastic pollution in the marine waters and sediments of Hong Kong.

PubMed

Tsang, Y Y; Mak, C W; Liebich, C; Lam, S W; Sze, E T-P; Chan, K M

2017-02-15

The presence of plastic waste with a diameter of less than 5mm ("microplastics") in marine environments has prompted increasing concern in recent years, both locally and globally. We conducted seasonal surveys of microplastic pollution in the surface waters and sediments from Deep Bay, Tolo Harbor, Tsing Yi, and Victoria Harbor in Hong Kong between June 2015 and March 2016. The average concentrations of microplastics in local coastal waters and sediments respectively ranged from 51 to 27,909particles per 100m 3 and 49 to 279particles per kilogram. Microplastics of different shapes (mainly fragments, lines, fibers, and pellets) were identified as polypropylene, low-density polyethylene, high-density polyethylene, a blend of polypropylene and ethylene propylene, and styrene acrylonitrile by means of Attenuated Total Reflectance - Fourier Transform Infrared Spectroscopy. This is the first comprehensive study to assess the spatial and temporal variations of microplastic pollution in Hong Kong coastal regions. Copyright © 2016 Elsevier Ltd. All rights reserved.

Biogeochemical Insights into B-Vitamins in the Coastal Marine Sediments of San Pedro Basin, CA

NASA Astrophysics Data System (ADS)

Monteverde, D.; Berelson, W.; Baronas, J. J.; Sanudo-Wilhelmy, S. A.

2015-12-01

Coastal marine sediments support a high abundance of mircoorganisms which play key roles in the cycling of nutrients, trace metals, and carbon, yet little is known about many of the cofactors essential for their growth, such as the B-vitamins. The suite of B-vitamins (B1, B2, B6, B7, B12) are essential across all domains of life for both primary and secondary metabolism. Therefore, studying sediment concentrations of B-vitamins can provide a biochemical link between microbial processes and sediment geochemistry. Here we present B-vitamin pore water concentrations from suboxic sediment cores collected in September 2014 from San Pedro Basin, a silled, low oxygen, ~900 m deep coastal basin in the California Borderlands. We compare the B-vitamin concentrations (measured via LCMS) to a set of geochemical profiles including dissolved Fe (65-160 μM), dissolved Mn (30-300 nM), TCO2, solid phase organic carbon, and δ13C. Our results show high concentrations (0.8-3nM) of biotin (B7), commonly used for CO2 fixation as a cofactor in carboxylase enzymes. Thiamin (B1) concentrations were elevated (20-700nM), consistent with previous pore water measurements showing sediments could be a source of B1 to the ocean. Cobalamin (B12), a cofactor required for methyl transfers in methanogens, was also detected in pore waters (~4-40pM). The flavins (riboflavin [B2] and flavin mononucleotide[FMN]), molecules utilized in external electron transfer, showed a distinct increase with depth (10-90nM). Interestingly, the flavin profiles showed an inverse trend to dissolved Fe (Fe decreases with depth) providing a potential link to culture experiments which have shown extracellular flavin release to be a common trait in some metal reducers. As some of the first B-vitamin measurements made in marine sediments, these results illustrate the complex interaction between the microbial community and surrounding geochemical environment and provide exciting avenues for future research.

Marine Subsurface Microbial Community Shifts Across a Hydrothermal Gradient in Okinawa Trough Sediments

PubMed Central

2016-01-01

Sediments within the Okinawa back-arc basin overlay a subsurface hydrothermal network, creating intense temperature gradients with sediment depth and potential limits for microbial diversity. We investigated taxonomic changes across 45 m of recovered core with a temperature gradient of 3°C/m from the dynamic Iheya North Hydrothermal System. The interval transitions sharply from low-temperature marine mud to hydrothermally altered clay at 10 meters below seafloor (mbsf). Here, we present taxonomic results from an analysis of the 16S rRNA gene that support a conceptual model in which common marine subsurface taxa persist into the subsurface, while high temperature adapted archaeal taxa show localized peaks in abundances in the hydrothermal clay horizons. Specifically, the bacterial phylum Chloroflexi accounts for a major proportion of the total microbial community within the upper 10 mbsf, whereas high temperature archaea (Terrestrial Hot Spring Crenarchaeotic Group and methanotrophic archaea) appear in varying local abundances in deeper, hydrothermal clay horizons with higher in situ temperatures (up to 55°C, 15 mbsf). In addition, geochemical evidence suggests that methanotrophy may be occurring in various horizons. There is also relict DNA (i.e., DNA preserved after cell death) that persists in horizons where the conditions suitable for microbial communities have ceased. PMID:28096736

Sediment Contaminants and Infauna Associated with Recreational Boating Structures in a Multi-Use Marine Park.

PubMed

Sim, Vivian X Y; Dafforn, Katherine A; Simpson, Stuart L; Kelaher, Brendan P; Johnston, Emma L

2015-01-01

Multi-use marine parks achieve conservation through spatial management of activities. Zoning of marine parks in New South Wales, Australia, includes high conservation areas and special purpose zones (SPZ) where maritime activities are concentrated. Although such measures geographically constrain anthropogenic impacts, we have limited understanding of potential ecological effects. We assessed sediment communities and contaminants adjacent to boating infrastructure (boat ramps, jetties and a marina) in a SPZ from the Clyde Estuary in Batemans Marine Park. Metal concentrations and fines content were elevated at boating structures compared to reference sites. Species richness was higher at sites with boating structures, where capitellid polychaetes and nematodes dominated the communities. Changes associated with boating structures were localised and did not extend beyond breakwalls or to reference sites outside the SPZ. The study highlights the benefits of appropriate zoning in a multi-use marine park and the potential to minimise stress on pristine areas through the application of spatial management.

Sediment Contaminants and Infauna Associated with Recreational Boating Structures in a Multi-Use Marine Park

PubMed Central

Sim, Vivian X. Y.; Dafforn, Katherine A.; Simpson, Stuart L.; Kelaher, Brendan P.; Johnston, Emma L.

2015-01-01

Multi-use marine parks achieve conservation through spatial management of activities. Zoning of marine parks in New South Wales, Australia, includes high conservation areas and special purpose zones (SPZ) where maritime activities are concentrated. Although such measures geographically constrain anthropogenic impacts, we have limited understanding of potential ecological effects. We assessed sediment communities and contaminants adjacent to boating infrastructure (boat ramps, jetties and a marina) in a SPZ from the Clyde Estuary in Batemans Marine Park. Metal concentrations and fines content were elevated at boating structures compared to reference sites. Species richness was higher at sites with boating structures, where capitellid polychaetes and nematodes dominated the communities. Changes associated with boating structures were localised and did not extend beyond breakwalls or to reference sites outside the SPZ. The study highlights the benefits of appropriate zoning in a multi-use marine park and the potential to minimise stress on pristine areas through the application of spatial management. PMID:26086427

Radioactivity, radiological risk and metal pollution assessment in marine sediments from Calabrian selected areas, southern Italy

NASA Astrophysics Data System (ADS)

Caridi, F.; Messina, M.; Faggio, G.; Santangelo, S.; Messina, G.; Belmusto, G.

2018-02-01

The two most significant categories of physical and chemical pollutants in sediments (radionuclides and metals) were investigated in this article, in order to evaluate pollution levels in marine sediments from eight different selected sites of the Calabria region, south of Italy. In particular samples were analyzed to determine natural and anthropic radioactivity and metal concentrations, in order to assess any possible radiological hazard, the level of contamination and the possible anthropogenic impact in the investigated area. Activity concentrations of 226Ra, 232Th, 40K and 137Cs were measured by High Purity Germanium (HPGe) gamma spectrometry. The obtained results show that, for radium (in secular equilibrium with uranium), the specific activity ranges from ( 14 ± 1) Bq/kg dry weight (d.w.) to ( 54 ± 9) Bq/kg d.w.; for thorium, from ( 12 ± 1) Bq/kg d.w. to ( 83 ± 8) Bq/kg d.w.; for potassium, from ( 470 ± 20) Bq/kg d.w. to ( 1000 ± 70) Bq/kg d.w. and for cesium it is lower than the minimum detectable activity value. The absorbed gamma dose rate in air (D), the annual effective dose equivalent (AEDE) outdoor and the external hazard index ( H_ex) were calculated to evaluate any possible radiological risk, mainly due to the use of marine sediments for the beach nourishment. The results show low levels of radioactivity, thus discarding any significant radiological risk. Some metals (As, Cd, Cr tot, Hg, Ni, Pb, Cu, Zn, Mn and Fe), that could be released into the environment by both natural and anthropogenic sources, were investigated through inductively coupled plasma mass spectrometry (ICP-MS) measurements and compared with the limits set by the Italian Legislation, to assess any possible contamination. Experimental results show that they are much lower than the contamination threshold value, thus excluding their presence as pollutants. The degree of sediment contaminations were quantified using enrichment factor ( EF) and geoaccumulation index ( I geo) for

Late Miocene fossils from shallow marine sediments in Brunei Darussalam: systematics, palaeoenvironment and ecology.

NASA Astrophysics Data System (ADS)

Roslim, Amajida; Briguglio, Antonino; Kocsis, László; Ćorić, Stjepan; Razak, Hazirah

2016-04-01

The geology of Brunei Darussalam is fascinating but difficult to approach: rainforests and heavy precipitation tend to erode and smoothen the landscape limiting rocks exposure, whereas abundant constructions sites and active quarries allow the creation of short time available outcrop, which have to be immediately sampled. The stratigraphy of Brunei Darussalam comprises mainly Neogene sediments deposited in a wave to tide dominated shallow marine environment in a pure siliciclastic system. Thick and heavily bioturbated sandstone layers alternate to claystone beds which occasionally yield an extraordinary abundance and diversity of fossils. The sandstones, when not bioturbated, are commonly characterized by a large variety of sedimentary structures (e.g., ripple marks, planar laminations and cross beddings). In this study, we investigate the sediments and the fossil assemblages to record the palaeoenvironmental evolution of the shallow marine environment during the late Miocene, in terms of sea level change, chemostratigraphy and sedimentation rate. The study area is one of the best in terms of accessibility, extension, abundance and preservation of fossils; it is located in the region -'Bukit Ambug' (Ambug Hill), Tutong District. The fossils fauna collected encompasses mollusks, decapods, otoliths, shark and ray teeth, amber, foraminifera and coccolithophorids. In this investigation, sediment samples were taken along a section which measures 62.5 meters. A thick clay layer of 9 meters was sampled each 30 cm to investigate microfossils occurrences. Each sample was treated in peroxide and then sieved trough 63 μm, 150μm, 250μm, 450μm, 600μm, 1mm and 2mm sieves. Results point on the changes in biodiversity of foraminifera along the different horizons collected reflecting sea level changes and sediment production. The most abundant taxa identified are Pseoudorotalia schroeteriana, Ampistegina lessonii, Elphidium advenum, Quinqueloculina sp., Bolivina sp

Nitrogen Cycling and Community Structure of Proteobacterial β-Subgroup Ammonia-Oxidizing Bacteria within Polluted Marine Fish Farm Sediments

PubMed Central

McCaig, Allison E.; Phillips, Carol J.; Stephen, John R.; Kowalchuk, George A.; Harvey, S. Martyn; Herbert, Rodney A.; Embley, T. Martin; Prosser, James I.

1999-01-01

A multidisciplinary approach was used to study the effects of pollution from a marine fish farm on nitrification rates and on the community structure of ammonia-oxidizing bacteria in the underlying sediment. Organic content, ammonium concentrations, nitrification rates, and ammonia oxidizer most-probable-number counts were determined in samples of sediment collected from beneath a fish cage and on a transect at 20 and 40 m from the cage. The data suggest that nitrogen cycling was significantly disrupted directly beneath the fish cage, with inhibition of nitrification and denitrification. Although visual examination indicated some slight changes in sediment appearance at 20 m, all other measurements were similar to those obtained at 40 m, where the sediment was considered pristine. The community structures of proteobacterial β-subgroup ammonia-oxidizing bacteria at the sampling sites were compared by PCR amplification of 16S ribosomal DNA (rDNA), using primers which target this group. PCR products were analyzed by denaturing gradient gel electrophoresis (DGGE) and with oligonucleotide hybridization probes specific for different ammonia oxidizers. A DGGE doublet observed in PCR products from the highly polluted fish cage sediment sample was present at a lower intensity in the 20-m sample but was absent from the pristine 40-m sample station. Band migration, hybridization, and sequencing demonstrated that the doublet corresponded to a marine Nitrosomonas group which was originally observed in 16S rDNA clone libraries prepared from the same sediment samples but with different PCR primers. Our data suggest that this novel Nitrosomonas subgroup was selected for within polluted fish farm sediments and that the relative abundance of this group was influenced by the extent of pollution. PMID:9872782

Toxicological and chemical assessment of ordnance compounds in marine sediments and porewaters

USGS Publications Warehouse

Nipper, M.; Carr, R.S.; Biedenbach, J.M.; Hooten, R.L.; Miller, K.

2002-01-01

Toxicological and chemical studies were performed with a silty and a sandy marine sediment spiked with 2,6-dinitrotoluene (2,6-DNT), 2,4,6-trinitrophenylmethylnitramine (tetryl), or 2,4,6-trinitrophenol (picric acid). Whole sediment toxicity was analyzed by the 10-day survival test with the amphipod Ampelisca abdita, and porewater toxicity tests assessed macro-algae (Ulva fasciata) zoospore germination and germling growth, sea urchin (Arbacia punctulata) embryological development, and polychaete (Dinophilus gyrociliatus) survival and reproduction. Whole sediments spiked with 2,6-DNT were not toxic to amphipods. The fine-grained sediment spiked with tetryl was also not acutely toxic. The tetryl and picric acid LC50 values in the sandy sediment were 3.24 and 144 mg/kg dry weight, respectively. The fine-grained sediment spiked with picric acid generated a U-shaped concentration-response curve in the amphipod test, with increased survival both in the lowest and highest concentration. Grain-size distribution and organic carbon content strongly influenced the behavior of ordnance compounds in spiked sediments. Very low concentrations were measured in some of the treatments and irreversible binding and biodegradation are suggested as the processes responsible for the low measurements. Porewater toxicity varied with its sedimentary origin and with ordnance compound. The sea urchin embryological development test tended to be the least sensitive. Tetryl was the most toxic chemical in all porewater tests, and picric acid the least toxic. Samples spiked with 2,6-DNT contained a degradation product identified as 2-methyl-3-nitroaniline (also known as 2-amino-6-nitrotoluene), and unidentified peaks, possibly degradation products, were also seen in some of the picric acid- and tetryl-spiked samples. Degradation products may have played a role in observed toxicity. ?? 2002 Elsevier Science Ltd. All rights reserved.

IMPORTANCE OF BLACK CARBON IN DISTRIBUTION AND BIOACCUMULATION MODELS OF POLYCYCLIC AROMATIC HYDROCARBONS IN CONTAMINATED MARINE SEDIMENTS

EPA Science Inventory

The roles and relative importance of nonpyrogenic organic carbon (NPOC) and black carbon (BC) as binding phases of polycyclic aromatic hydrocarbons (PAHs) were assessed by their ability to estimate pore water concentrations and biological uptake in various marine sediments. Sedim...

Heavy metal assessment in surface sediments off Coromandel Coast of India: Implication on marine pollution.

PubMed

N, Anbuselvan; D, Senthil Nathan; M, Sridharan

2018-06-01

The present study investigates the distribution of heavy metals (Fe, Cd, Co, Cr, Cu, Ni, Zn and Pb) in the surface sediments along the Coromandel Coast of Bay of Bengal as an indicator of marine pollution. Pollution indices such as Contamination factor (CF), Enrichment factor (EF) and Geo-accumulation index (I) were performed to assess the spatial distribution and pollution status of the study area. The heavy metal concentration in the study area is closely associated with grain size and organic matter. Both geoaccumulation index and metal contamination factor indicate that the sediments are free from contamination with regards to the metals Cr and Ni, followed by uncontamination to moderate contamination of Co, Cu and Zn. However, sediments are found to be extremely polluted with respect to Cd and Pb. Factor analysis reveals that the accumulation of these heavy metals in the shelf sediments are due to anthropogenic inputs from the adjacent land area. Copyright © 2018 Elsevier Ltd. All rights reserved.

Cadmium and zinc isotopes of organic-rich marine sediments during Oceanic Anoxic Event 2

NASA Astrophysics Data System (ADS)

Sweere, T.; Dickson, A. J.; Jenkyns, H. C.; Porcelli, D.; Henderson, G. M.; van den Boorn, S.

2017-12-01

Mesozoic Oceanic Anoxic Events (OAEs) are characterized by widespread deposition of organic-rich sediments and the spread of low-oxygen marine environments. To drive and sustain unusually efficient carbon-burial during these events requires high export productivity rates, which has to be supported by an abundance of nutrients in the surface ocean. The presence of redox-sensitive bio-essential micronutrients may be particularly important, and potentially bio-limiting, during such events as they may be drawn down into sediment under low-oxygen conditions. Cadmium and zinc isotopes have potential as tracers for past (micro)nutrient dynamics considering their nutrient-like distribution in the modern ocean and isotope fractionation with uptake by primary producers. The modern deep ocean is generally well mixed for Cd and Zn while short-term cycling of these elements in the surface ocean imposes regional variation. Additional regional variation may be caused by sulfide formation and associated isotope fractionation in euxinic environments. The impact of such regional environmental conditions on the Cd- and Zn-isotope composition of the sediment therefore needs to be addressed in order to explore the use of these elements as a proxy for past nutrient conditions. Here we present an extensive dataset of cadmium- and zinc-isotope compositions of organic-rich marine sediments from different basins deposited during OAE 2 (Late Cretaceous). This comparison highlights regional differences in Cd- and Zn-isotope compositions. However, despite regional environmental controls, a correlation between δ114Cd and δ66Zn across the different sites is observed, which implies a largely similar control on the two isotope systems. When regional environmental controls are accounted for, the data may provide insight in the δ66Zn and δ114Cd evolution of global seawater during OAE 2 as well as information on the global cycling of redox-sensitive micronutrients during the event

An improved method for quantitatively measuring the sequences of total organic carbon and black carbon in marine sediment cores

NASA Astrophysics Data System (ADS)

Xu, Xiaoming; Zhu, Qing; Zhou, Qianzhi; Liu, Jinzhong; Yuan, Jianping; Wang, Jianghai

2018-01-01

Understanding global carbon cycle is critical to uncover the mechanisms of global warming and remediate its adverse effects on human activities. Organic carbon in marine sediments is an indispensable part of the global carbon reservoir in global carbon cycling. Evaluating such a reservoir calls for quantitative studies of marine carbon burial, which closely depend on quantifying total organic carbon and black carbon in marine sediment cores and subsequently on obtaining their high-resolution temporal sequences. However, the conventional methods for detecting the contents of total organic carbon or black carbon cannot resolve the following specific difficulties, i.e., (1) a very limited amount of each subsample versus the diverse analytical items, (2) a low and fluctuating recovery rate of total organic carbon or black carbon versus the reproducibility of carbon data, and (3) a large number of subsamples versus the rapid batch measurements. In this work, (i) adopting the customized disposable ceramic crucibles with the microporecontrolled ability, (ii) developing self-made or customized facilities for the procedures of acidification and chemothermal oxidization, and (iii) optimizing procedures and carbon-sulfur analyzer, we have built a novel Wang-Xu-Yuan method (the WXY method) for measuring the contents of total organic carbon or black carbon in marine sediment cores, which includes the procedures of pretreatment, weighing, acidification, chemothermal oxidation and quantification; and can fully meet the requirements of establishing their highresolution temporal sequences, whatever in the recovery, experimental efficiency, accuracy and reliability of the measurements, and homogeneity of samples. In particular, the usage of disposable ceramic crucibles leads to evidently simplify the experimental scenario, which further results in the very high recovery rates for total organic carbon and black carbon. This new technique may provide a significant support for

Metal pollution and ecological risk assessment in marine sediments of Karachi Coast, Pakistan.

PubMed

Mashiatullah, Azhar; Chaudhary, Muhammad Zaman; Ahmad, Nasir; Javed, Tariq; Ghaffar, Abdul

2013-02-01

Concentrations of 12 metals (Fe, Mn, Cr, Mo, Ni, Pb, Se, Sr, U, V, Zn, and Zr) in surface sediments of Karachi Coast, Pakistan were determined to evaluate their distribution and pollution assessment. The measured metals in the sediments were found to be in the range of Fe, 0.84-6.96 %; Mn, 300-1,300 μg/g; Cr, 12.0-319.84 μg/g; Mo, 0.49-2.03 μg/g; Ni, 1.53-58.86 μg/g; Pb, 9.0-49.46 μg/g; Se, 0.25-.86 μg/g; Sr, 192-1185 μg/g; U, 0.19-1.66 μg/g; V, 15.80-118.20 μg/g; Zn, 15.60-666.28 μg/g; and Zr, 44.02-175.26 μg/g. The mean contents of the metal studied were: Fe, 3.07 %, Mn, 0.05 %; Cr, 96.75 μg/g; Mo, 1.34 μg/g; Ni, 31.39 μg/g; Pb, 23.24 μg/g; Se, 0.61 μg/g; Sr, 374.83 μg/g; U, 0.64 μg/g; V, 61.75 μg/g; Zn, 204.75 μg/g; and Zr:76.27 μg/g, and arrangement of the metals from higher to lower mean content in this area is: Fe > Zn > Mn > Sr > Zn > Cr > Zr > V > Ni > Pb > Mo > U > Se. There is no significant correlation among most of these metals, indicating different anthropogenic and natural sources. To assess ecotoxic potential of marine sediments, Numerical Sediment Quality Guidelines were also applied. The concentration of Pb in all the sediments except one was lower than the threshold effect concentration (TECs) showing that there are no harmful effects to marine life from Pb. On the other hand, the concentrations of Cr, Ni, and Zn exceeded TEC in three stations, indicating their potential risk. The degree of pollution in sediments for metals was assessed by calculating enrichment factor (EF) and pollution load index (PLI). The results indicated that sediments of Layari River Mouth Area, Fish Harbour, and KPT Boat Building Area are highly enriched with Cr and Zn (EF > 5). Sediments of Layari River Outfall Zone were moderately enriched with Ni and Pb (EF > 2). The pollution load index was found in the range of 0.98 to 1.34. Lower values of PLI (≤ 1) at most of sampling locations imply no appreciable input from anthropogenic sources. However

Rhodotorula portillonensis sp. nov., a basidiomycetous yeast isolated from Antarctic shallow-water marine sediment.

PubMed

Laich, Federico; Vaca, Inmaculada; Chávez, Renato

2013-10-01

During the characterization of the mycobiota associated with shallow-water marine environments from Antarctic sea, a novel pink yeast species was isolated. Sequence analysis of the D1/D2 domain of the LSU rDNA gene and 5.8S-ITS regions revealed that the isolated yeast was closely related to Rhodotorula pallida CBS 320(T) and Rhodotorula benthica CBS 9124(T). On the basis of morphological, biochemical and physiological characterization and phylogenetic analyses, a novel basidiomycetous yeast species, Rhodotorula portillonensis sp. nov., is proposed. The type strain is Pi2(T) ( = CBS 12733(T)  = CECT 13081(T)) which was isolated from shallow-water marine sediment in Fildes Bay, King George Island, Antarctica.

Hydrate Formation in Gas-Rich Marine Sediments: A Grain-Scale Model

NASA Astrophysics Data System (ADS)

Holtzman, R.; Juanes, R.

2009-12-01

We present a grain-scale model of marine sediment, which couples solid- and multiphase fluid-mechanics together with hydrate kinetics. The model is applied to investigate the spatial distribution of the different methane phases - gas and hydrate - within the hydrate stability zone. Sediment samples are generated from three-dimensional packs of spherical grains, mapping the void space into a pore network by tessellation. Gas invasion into the water-saturated sample is simulated by invasion-percolation, coupled with a discrete element method that resolves the grain mechanics. The coupled model accounts for forces exerted by the fluids, including cohesion associated with gas-brine surface tension. Hydrate growth is represented by a hydrate film along the gas-brine interface, which increases sediment cohesion by cementing the grain contacts. Our model of hydrate growth includes the possible rupture of the hydrate layer, which leads to the creation of new gas-water interface. In previous work, we have shown that fine-grained sediments (FGS) exhibit greater tendency to fracture, whereas capillary invasion is the preferred mode of methane gas transport in coarse-grained sediments (CGS). The gas invasion pattern has profound consequences on the hydrate distribution: a larger area-to-volume ratio of the gas cluster leads to a larger drop in gas pressure inside the growing hydrate shell, causing it to rupture. Repeated cycles of imbibition and hydrate growth accompanied by trapping of gas allow us to determine the distribution of hydrate and gas within the sediment as a function of time. Our pore-scale model suggests that, even when film rupture takes place, the conversion of gas to hydrate is slow. This explains two common field observations: the coexistence of gas and hydrate within the hydrate stability zone in CGS, and the high methane fluxes through fracture conduits in FGS. These results demonstrate the importance of accounting for the strong coupling among multiphase

Glacial-marine sediments record ice-shelf retreat during the late Holocene in Beascochea Bay on the western margin of the Antarctic Peninsula

NASA Astrophysics Data System (ADS)

Hardin, L. A.; Wellner, J. S.

2010-12-01

Beascochea Bay has an overall rapid rate of sedimentation due to retreating fast-flowing ice, and thus contains high-resolution records of Antarctica’s glacial and climate history. Beascochea Bay is a 16 km long by 8 km wide bay located on the western margin of the Antarctica Peninsula, centered between Anvers Island and Renaud Island, but open to the Bellingshausen Sea. Currently, three tidewater glaciers draining the Bruce Plateau of Graham Land enter into the fjords of Beascochea Bay, releasing terrigenous sediments which have left a record of the fluctuations of the Antarctic Peninsula Ice Cap since the grounded ice decoupled from the seafloor after the last glacial maximum. These three glaciers have played a significant role in providing sediment to the main basin, allowing a detailed sediment facies analysis to be conducted from eight sediment cores which were collected during the austral summer of 2007. Pebbly silty clay sediment cores, along with 3.5 kHz seismic data and multibeam swath bathymetry data, are integrated to reconstruct a glacial retreat timeline for the middle to late Holocene, which can be compared to the recent retreat rates over the last century. Paleoenvironment of deposition is determined by mapping lateral facies changes from the side fjords (proximal) to the outer basin (distal), as each region records the transition from glacial-marine sediments to open-marine sediments. As the ice retreated from the outer basin to the inner basin, and most recently leaving the side fjords, each facies deposited can be age-constrained by radiocarbon, 210Pb, and 137Cs dating methods. A distinct 137Cs signal is readily seen in two kasten cores from a side fjord and the inner basin of Beascochea Bay. This dating method revealed an average sedimentation rate of 2.7 mm per year for approximately the last century, which is comparable to 210Pb rates obtained in other studies. Lithology variations in each sediment core record indications of ice

Transformation of marine sediment to paddy soil: Primary marine, lacustrine, and land plant lipids

NASA Astrophysics Data System (ADS)

Mueller-Niggemann, Cornelia; Cao, Zhihong; Schwark, Lorenz

2010-05-01

More than fifty percent of the world's population feeds on rice. The continuous population increase and urban sprawl leads to an ever-increasing demand for new rice cultivation area, in particular China. For centuries suitable coastal areas in China have been exploited for land reclamation, i.e. conversion of coastal marine and lacustrine marshlands into rice paddy fields. Flooded rice paddies are considered one of the major biogenic sources of methane into the atmospheric. Methane is thought to be about 30 times more efficient as greenhouse gas, when compared to carbon dioxide. Overall, rice fields are assumed to contribute app. 10-25% to global CH4 production. It is thus paramount importance to study the effects of increasing rice cultivation and land reclamation in China. For global carbon cycle investigation, it is crucial whether paddy soils, due to their large extent and higher carbon turnover, serve as carbon (CO2) sinks or sources. Here we present results from a chronosequence study of paddy soils with different and well known starting dates of cultivation, in the Zhejiang province (Yangtze River delta) by land reclamation through the building of protective dikes over the past 2000 years. Two end members of natural sediments subjected to land reclamation, a marine tidal mudflat in the Yangtze delta and a coastal lake, represent the substrate on which the paddy soil evolution started. Dike systems were constructed 2000, 1000, 700, 300, 100, and 50 years before present. We are thus able to follow the evolution of rice paddy soils developed on marine sediments using eight well defined tie-points. This chronosequence is then used for assessing the relative proportion of primary marine or lacustrine organic matter preserved in present day soils and to identify the amount and composition of organic matter added since cultivation started. Paddy soil management introduces rice plants debris and exudates as well as rice-associated microbial biomass (covered in a

Some Free-Living Heterotrophic Flagellates from Marine Sediments of Tropical Australia

NASA Astrophysics Data System (ADS)

Je Lee, Won

2006-06-01

The diversity of heterotrophic flagellates was examined at marine sediments around Cape Tribulation, Australia. The species described belong to the Alveolates, Apusomonadidae, Cercomonadida, Choanoflagellida, Cry ptomonadida, Diplomonadida, Euglenozoa incertae sedis, Kathablepharidae, Kinetoplastida, Pedinellids, Stephanopogonidae, Stramenopiles, Stramenopiles incertae sedis, Thaumatomonadidae and Protista incertae sedis. Among the 51 species from 38 genera encountered in this study is one new taxon: Glissandra similis n. sp., and two new names are introduced: Goniomonas abrupta (Skvortzov 1924) nomen nodum and Cercomonas skvortzovi (Skvortzov 1977) nomen nodum. There was little evidence for endemism because most flagellates including one new taxon described here have been reported.

Plastic litter in sediments from a marine area likely to become protected (Aeolian Archipelago's islands, Tyrrhenian sea).

PubMed

Fastelli, Paolo; Blašković, Andrea; Bernardi, Giulia; Romeo, Teresa; Čižmek, Hrvoje; Andaloro, Franco; Russo, Giovanni F; Guerranti, Cristiana; Renzi, Monia

2016-12-15

This research aims to define for the first time levels and patterns of different litter groups (macro, meso and microplastics) in sediments from a marine area designed for the institution of a new marine protected area (Aeolian Archipelago, Italy). Microplastics resulted the principal group and found in all samples analyzed, with shape and colours variable between different sampling sites. MPs levels measured in this study are similar to values recorded in harbour sites and lower than reported in Adriatic Sea, while macroplastics levels are notably lower than in harbor sites. Sediment grain-size and island extent resulted not significant in determining levels and distribution of plastic debris among islands. In the future, following the establishment of the MPA in the study area, these basic data will be useful to check for potential protective effects on the levels and distribution of plastic debris. Copyright © 2016 Elsevier Ltd. All rights reserved.

Combining contamination indexes, sediment quality guidelines and multivariate data analysis for metal pollution assessment in marine sediments of Cienfuegos Bay, Cuba.

PubMed

Peña-Icart, Mirella; Pereira-Filho, Edenir Rodrigues; Lopes Fialho, Lucimar; Nóbrega, Joaquim A; Alonso-Hernández, Carlos; Bolaños-Alvarez, Yoelvis; Pomares-Alfonso, Mario S

2017-02-01

The purpose of the present work was to combine several tools for assessing metal pollution in marine sediments from Cienfuegos Bay. Fourteen surface sediments collected in 2013 were evaluated. Concentrations of As, Cu, Ni, Zn and V decreased respect to those previous reported. The metal contamination was spatially distributed in the north and south parts of the bay. According to the contamination factor (CF) enrichment factor (EF) and index of geoaccumulation (I geo ), Cd and Cu were classified in that order as the most contaminated elements in most sediment. Comparison of the total metal concentrations with the threshold (TELs) and probable (PELs) effect levels in sediment quality guidelines suggested a more worrisome situation for Cu, of which concentrations were occasional associated with adverse biological effects in thirteen sediments, followed by Ni in nine sediments; while adverse effects were rarely associated with Cd. Probably, Cu could be considered as the most dangerous in the whole bay because it was classified in the high contamination levels by all indexes and, simultaneously, associated to occasional adverse effects in most samples. Despite the bioavailability was partially evaluated with the HCl method, the low extraction of Ni (<3% in all samples) and Cu (<55%, except sample 3) and the relative high extraction of Cd (50% or more, except sample 14) could be considered as an attenuating (Ni and Cu) or increasing (Cd) factor in the risk assessment of those element. Copyright © 2016. Published by Elsevier Ltd.

Modeling catchment nutrients and sediment loads to inform regional management of water quality in coastal-marine ecosystems: a comparison of two approaches.

PubMed

Álvarez-Romero, Jorge G; Wilkinson, Scott N; Pressey, Robert L; Ban, Natalie C; Kool, Johnathan; Brodie, Jon

2014-12-15

Human-induced changes in flows of water, nutrients, and sediments have impacts on marine ecosystems. Quantifying these changes to systematically allocate management actions is a priority for many areas worldwide. Modeling nutrient and sediment loads and contributions from subcatchments can inform prioritization of management interventions to mitigate the impacts of land-based pollution on marine ecosystems. Among the catchment models appropriate for large-scale applications, N-SPECT and SedNet have been used to prioritize areas for management of water quality in coastal-marine ecosystems. However, an assessment of their relative performance, parameterization, and utility for regional-scale planning is needed. We examined how these considerations can influence the choice between the two models and the areas identified as priorities for management actions. We assessed their application in selected catchments of the Gulf of California, where managing land-based threats to marine ecosystems is a priority. We found important differences in performance between models. SedNet consistently estimated spatial variations in runoff with higher accuracy than N-SPECT and modeled suspended sediment (TSS) loads mostly within the range of variation in observed loads. N-SPECT overestimated TSS loads by orders of magnitude when using the spatially-distributed sediment delivery ratio (SDR), but outperformed SedNet when using a calibrated SDR. Differences in subcatchments' contribution to pollutant loads were principally due to explicit representation of sediment sinks and particulate nutrients by SedNet. Improving the floodplain extent model, and constraining erosion estimates by local data including gully erosion in SedNet, would improve results of this model and help identify effective management responses. Differences between models in the patterns of modeled pollutant supply were modest, but significantly influenced the prioritization of subcatchments for management. Copyright �

Chemoautotrophic carbon fixation rates and active bacterial communities in intertidal marine sediments.

PubMed

Boschker, Henricus T S; Vasquez-Cardenas, Diana; Bolhuis, Henk; Moerdijk-Poortvliet, Tanja W C; Moodley, Leon

2014-01-01

Chemoautotrophy has been little studied in typical coastal marine sediments, but may be an important component of carbon recycling as intense anaerobic mineralization processes in these sediments lead to accumulation of high amounts of reduced compounds, such as sulfides and ammonium. We studied chemoautotrophy by measuring dark-fixation of 13C-bicarbonate into phospholipid derived fatty acid (PLFA) biomarkers at two coastal sediment sites with contrasting sulfur chemistry in the Eastern Scheldt estuary, The Netherlands. At one site where free sulfide accumulated in the pore water right to the top of the sediment, PLFA labeling was restricted to compounds typically found in sulfur and ammonium oxidizing bacteria. At the other site, with no detectable free sulfide in the pore water, a very different PLFA labeling pattern was found with high amounts of label in branched i- and a-PLFA besides the typical compounds for sulfur and ammonium oxidizing bacteria. This suggests that other types of chemoautotrophic bacteria were also active, most likely Deltaproteobacteria related to sulfate reducers. Maximum rates of chemoautotrophy were detected in first 1 to 2 centimeters of both sediments and chemosynthetic biomass production was high ranging from 3 to 36 mmol C m(-2) d(-1). Average dark carbon fixation to sediment oxygen uptake ratios were 0.22±0.07 mol C (mol O2)(-1), which is in the range of the maximum growth yields reported for sulfur oxidizing bacteria indicating highly efficient growth. Chemoautotrophic biomass production was similar to carbon mineralization rates in the top of the free sulfide site, suggesting that chemoautotrophic bacteria could play a crucial role in the microbial food web and labeling in eukaryotic poly-unsaturated PLFA was indeed detectable. Our study shows that dark carbon fixation by chemoautotrophic bacteria is a major process in the carbon cycle of coastal sediments, and should therefore receive more attention in future studies on

MOSAIC: An organic geochemical and sedimentological database for marine surface sediments

NASA Astrophysics Data System (ADS)

Tavagna, Maria Luisa; Usman, Muhammed; De Avelar, Silvania; Eglinton, Timothy

2015-04-01

Modern ocean sediments serve as the interface between the biosphere and the geosphere, play a key role in biogeochemical cycles and provide a window on how contemporary processes are written into the sedimentary record. Research over past decades has resulted in a wealth of information on the content and composition of organic matter in marine sediments, with ever-more sophisticated techniques continuing to yield information of greater detail and as an accelerating pace. However, there has been no attempt to synthesize this wealth of information. We are establishing a new database that incorporates information relevant to local, regional and global-scale assessment of the content, source and fate of organic materials accumulating in contemporary marine sediments. In the MOSAIC (Modern Ocean Sediment Archive and Inventory of Carbon) database, particular emphasis is placed on molecular and isotopic information, coupled with relevant contextual information (e.g., sedimentological properties) relevant to elucidating factors that influence the efficiency and nature of organic matter burial. The main features of MOSAIC include: (i) Emphasis on continental margin sediments as major loci of carbon burial, and as the interface between terrestrial and oceanic realms; (ii) Bulk to molecular-level organic geochemical properties and parameters, including concentration and isotopic compositions; (iii) Inclusion of extensive contextual data regarding the depositional setting, in particular with respect to sedimentological and redox characteristics. The ultimate goal is to create an open-access instrument, available on the web, to be utilized for research and education by the international community who can both contribute to, and interrogate the database. The submission will be accomplished by means of a pre-configured table available on the MOSAIC webpage. The information on the filled tables will be checked and eventually imported, via the Structural Query Language (SQL), into

Discriminative detection and enumeration of microbial life in marine subsurface sediments.

PubMed

Morono, Yuki; Terada, Takeshi; Masui, Noriaki; Inagaki, Fumio

2009-05-01

Detection and enumeration of microbial life in natural environments provide fundamental information about the extent of the biosphere on Earth. However, it has long been difficult to evaluate the abundance of microbial cells in sedimentary habitats because non-specific binding of fluorescent dye and/or auto-fluorescence from sediment particles strongly hampers the recognition of cell-derived signals. Here, we show a highly efficient and discriminative detection and enumeration technique for microbial cells in sediments using hydrofluoric acid (HF) treatment and automated fluorescent image analysis. Washing of sediment slurries with HF significantly reduced non-biological fluorescent signals such as amorphous silica and enhanced the efficiency of cell detachment from the particles. We found that cell-derived SYBR Green I signals can be distinguished from non-biological backgrounds by dividing green fluorescence (band-pass filter: 528/38 nm (center-wavelength/bandwidth)) by red (617/73 nm) per image. A newly developed automated microscope system could take a wide range of high-resolution image in a short time, and subsequently enumerate the accurate number of cell-derived signals by the calculation of green to red fluorescence signals per image. Using our technique, we evaluated the microbial population in deep marine sediments offshore Peru and Japan down to 365 m below the seafloor, which provided objective digital images as evidence for the quantification of the prevailing microbial life. Our method is hence useful to explore the extent of sub-seafloor life in the future scientific drilling, and moreover widely applicable in the study of microbial ecology.

Concentrations of selected radionuclides and their spatial distribution in marine sediments from the northwestern Gulf, Kuwait.

PubMed

Uddin, Saif; Behbehani, Montaha

2018-02-01

This study focuses on creating a baseline for 40 K, 210 Pb, 137 Cs, 90 Sr, 226 Ra, 228 Ra, 238 U, 235 U, 234 U, 239+240 Pu and 238 Pu in marine sediments in the northwestern Gulf. The respective measured concentration ranges were 386-489, 32.3-48.8, 1.5-2.9, 4.53-5.42, 18.3-23.1, 18.8-23.0, 22.3-30.5, 0.99-1.33, 25.6-34.8, 0.30-0.93, and 0.0008-0.00018Bqkg -1 . The levels of these radionuclides are generally comparable to values reported for other marine waters in the northern hemisphere. The 137 Cs activity in the Gulf sediments offshore Kuwait is an order of magnitude lower compared to sediments from northeastern Iran. Other than that finding, no hot spots were observed in sediments adjacent to power and desalination plants, oil and gas industrial activities or wastewater treatment facilities. These data will serve as a baseline to gauge possible future inputs of radionuclides in the northern Gulf. The calculated average ratio of 235 U/ 238 U activity in the area is in agreement with the reported figure of the natural uranium ratio, suggesting the absence of depleted uranium (DU) at all the stations. The low concentration of 239+240 Pu suggests that there is no significant source of plutonium except that from atmospheric fallout from weapon testing and possible dry deposition via long-range dust transport. Copyright © 2017 Elsevier Ltd. All rights reserved.

Is Ice-Rafted Sediment in a North Pole Marine Record Evidence for Perennial Sea-ice Cover?

NASA Technical Reports Server (NTRS)

Tremblay, L.B.; Schmidt, G.A.; Pfirman, S.; Newton, R.; DeRepentigny, P.

2015-01-01

Ice-rafted sediments of Eurasian and North American origin are found consistently in the upper part (13 Ma BP to present) of the Arctic Coring Expedition (ACEX) ocean core from the Lomonosov Ridge, near the North Pole (approximately 88 degrees N). Based on modern sea-ice drift trajectories and speeds, this has been taken as evidence of the presence of a perennial sea-ice cover in the Arctic Ocean from the middle Miocene onwards. However, other high latitude land and marine records indicate a long-term trend towards cooling broken by periods of extensive warming suggestive of a seasonally ice-free Arctic between the Miocene and the present. We use a coupled sea-ice slab-ocean model including sediment transport tracers to map the spatial distribution of ice-rafted deposits in the Arctic Ocean. We use 6 hourly wind forcing and surface heat fluxes for two different climates: one with a perennial sea-ice cover similar to that of the present day and one with seasonally ice-free conditions, similar to that simulated in future projections. Model results confirm that in the present-day climate, sea ice takes more than 1 year to transport sediment from all its peripheral seas to the North Pole. However, in a warmer climate, sea-ice speeds are significantly faster (for the same wind forcing) and can deposit sediments of Laptev, East Siberian and perhaps also Beaufort Sea origin at the North Pole. This is primarily because of the fact that sea-ice interactions are much weaker with a thinner ice cover and there is less resistance to drift. We conclude that the presence of ice-rafted sediment of Eurasian and North American origin at the North Pole does not imply a perennial sea-ice cover in the Arctic Ocean, reconciling the ACEX ocean core data with other land and marine records.

Biogeochemical and Molecular Signatures of Anaerobic Methane Oxidation in a Marine Sediment

PubMed Central

Thomsen, Trine R.; Finster, Kai; Ramsing, Niels B.

2001-01-01

Anaerobic methane oxidation was investigated in 6-m-long cores of marine sediment from Aarhus Bay, Denmark. Measured concentration profiles for methane and sulfate, as well as in situ rates determined with isotope tracers, indicated that there was a narrow zone of anaerobic methane oxidation about 150 cm below the sediment surface. Methane could account for 52% of the electron donor requirement for the peak sulfate reduction rate detected in the sulfate-methane transition zone. Molecular signatures of organisms present in the transition zone were detected by using selective PCR primers for sulfate-reducing bacteria and for Archaea. One primer pair amplified the dissimilatory sulfite reductase (DSR) gene of sulfate-reducing bacteria, whereas another primer (ANME) was designed to amplify archaeal sequences found in a recent study of sediments from the Eel River Basin, as these bacteria have been suggested to be anaerobic methane oxidizers (K. U. Hinrichs, J. M. Hayes, S. P. Sylva, P. G. Brewer, and E. F. DeLong, Nature 398:802–805, 1999). Amplification with the primer pairs produced more amplificate of both target genes with samples from the sulfate-methane transition zone than with samples from the surrounding sediment. Phylogenetic analysis of the DSR gene sequences retrieved from the transition zone revealed that they all belonged to a novel deeply branching lineage of diverse DSR gene sequences not related to any previously described DSR gene sequence. In contrast, DSR gene sequences found in the top sediment were related to environmental sequences from other estuarine sediments and to sequences of members of the genera Desulfonema, Desulfococcus, and Desulfosarcina. Phylogenetic analysis of 16S rRNA sequences obtained with the primers targeting the archaeal group of possible anaerobic methane oxidizers revealed two clusters of ANME sequences, both of which were affiliated with sequences from the Eel River Basin. PMID:11282617

Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment.

PubMed

Thomsen, T R; Finster, K; Ramsing, N B

2001-04-01

Anaerobic methane oxidation was investigated in 6-m-long cores of marine sediment from Aarhus Bay, Denmark. Measured concentration profiles for methane and sulfate, as well as in situ rates determined with isotope tracers, indicated that there was a narrow zone of anaerobic methane oxidation about 150 cm below the sediment surface. Methane could account for 52% of the electron donor requirement for the peak sulfate reduction rate detected in the sulfate-methane transition zone. Molecular signatures of organisms present in the transition zone were detected by using selective PCR primers for sulfate-reducing bacteria and for Archaea. One primer pair amplified the dissimilatory sulfite reductase (DSR) gene of sulfate-reducing bacteria, whereas another primer (ANME) was designed to amplify archaeal sequences found in a recent study of sediments from the Eel River Basin, as these bacteria have been suggested to be anaerobic methane oxidizers (K. U. Hinrichs, J. M. Hayes, S. P. Sylva, P. G. Brewer, and E. F. DeLong, Nature 398:802-805, 1999). Amplification with the primer pairs produced more amplificate of both target genes with samples from the sulfate-methane transition zone than with samples from the surrounding sediment. Phylogenetic analysis of the DSR gene sequences retrieved from the transition zone revealed that they all belonged to a novel deeply branching lineage of diverse DSR gene sequences not related to any previously described DSR gene sequence. In contrast, DSR gene sequences found in the top sediment were related to environmental sequences from other estuarine sediments and to sequences of members of the genera Desulfonema, Desulfococcus, and Desulfosarcina. Phylogenetic analysis of 16S rRNA sequences obtained with the primers targeting the archaeal group of possible anaerobic methane oxidizers revealed two clusters of ANME sequences, both of which were affiliated with sequences from the Eel River Basin.

A Threshold in Phanerozoic Oxygen Concentrations: Evidence from Carbonate Sediment Color and Physiological Requirements of Marine Fauna

NASA Astrophysics Data System (ADS)

Sugla, R.; Norris, R. D.; Lyakov, J.

2017-12-01

In his book The Nature of the Stratigraphical Record, Derek Ager made the remarkable observation that the geologic eras of the Phanerozoic could be identified by coloration patterns of carbonate sediments in outcrops. This observation, however, was never quantified nor explained by Ager. Here, we present a record of spectral reflectance of carbonate sediments collected from sections worldwide. While sediment color is governed by many factors, global and abrupt shifts in sediment color across depositional envrionments observed here may represent a shift towards rising oxygen concentrations. Such a shift would explain changes in redox state of iron or organic matter concentrations, both factors which influence sediment color. This record is combined with a simple model of physiological requirements of marine fauna in order to infer a minimum pO2 in the atmosphere to support life. Results indicate a strong threshold change in the Earth system near the Triassic-Jurassic boundary, potentially reflecting rising atmospheric oxygen concentrations not previously recorded.

Microbial diversity in methane hydrate-bearing deep marine sediments core preserved in the original pressure.

NASA Astrophysics Data System (ADS)

Takahashi, Y.; Hata, T.; Nishida, H.

2017-12-01

In normal coring of deep marine sediments, the sampled cores are exposed to the pressure of the atmosphere, which results in dissociation of gas-hydrates and might change microbial diversity. In this study, we analyzed microbial composition in methane hydrate-bearing sediment core sampled and preserved by Hybrid-PCS (Pressure Coring System). We sliced core into three layers; (i) outside layer, which were most affected by drilling fluids, (ii) middle layer, and (iii) inner layer, which were expected to be most preserved as the original state. From each layer, we directly extracted DNA, and amplified V3-V4 region of 16S rRNA gene. We determined at least 5000 of nucleotide sequences of the partial 16S rDNA from each layer by Miseq (Illumina). In the all layers, facultative anaerobes, which can grow with or without oxygen because they can metabolize energy aerobically or anaerobically, were detected as majority. However, the genera which are often detected anaerobic environment is abundant in the inner layer compared to the outside layer, indicating that condition of drilling and preservation affect the microbial composition in the deep marine sediment core. This study was conducted as a part of the activity of the Research Consortium for Methane Hydrate Resources in Japan [MH21 consortium], and supported by JOGMEC (Japan Oil, Gas and Metals National Corporation). The sample was provided by AIST (National Institute of Advanced Industrial Science and Technology).

NOAA National Status and Trends Program Twelfth Round Intercomparison Exercise Results for Trace Metals in Marine Sediments and Biological Tissues. National Status and Trends Program for marine environmental quality: Technical memo

DOE Office of Scientific and Technical Information (OSTI.GOV)

Willie, S.

1998-11-01

The report summarizes the results of the Twelfth Round Intercomparison for Trace Metals in Marine Sediments and Biological Tissues under the directive of the NOAA National Status and Trends Program. A total of forty-four participants were included in the exercise, including NOAA, USEPA, state, Austrailian, Canadian, Mexican and Argentinean laboratories. Two samples were sent by NRC to each participant, a marine sediment collected on the east coast of Canada and a freeze-dried mussel tissue. Laboratories were also asked to analyze two certified reference materials (CRMs) MESS-2 and CRM 2976. The elements to be determined were Al, Cr, Fe, Ni, Cu,more » Zn, As, Se, Ag, Cd, Sn, Hg, and Pb for both matrices, plus Be, Si, Mn, Sb, and Tl for the sediments. An accepted mean and confidence interval was calculated for each analyte in the two unknown samples, laboratory biases were identified and an overall rating of superior, good, fair or others were assigned to each laboratory.« less

Microbial distributions detected by an oligonucleotide microarray across geochemical zones associated with methane in marine sediments from the Ulleung Basin

DOE Office of Scientific and Technical Information (OSTI.GOV)

Briggs, Brandon R; Graw, Michael; Brodie, Eoin L

2013-11-01

The biogeochemical processes that occur in marine sediments on continental margins are complex; however, from one perspective they can be considered with respect to three geochemical zones based on the presence and form of methane: sulfate–methane transition (SMTZ), gas hydrate stability zone (GHSZ), and free gas zone (FGZ). These geochemical zones may harbor distinct microbial communities that are important in biogeochemical carbon cycles. The objective of this study was to describe the microbial communities in sediments from the SMTZ, GHSZ, and FGZ using molecular ecology methods (i.e. PhyloChip microarray analysis and terminal restriction fragment length polymorphism (T-RFLP)) and examining themore » results in the context of non-biological parameters in the sediments. Non-metric multidimensional scaling and multi-response permutation procedures were used to determine whether microbial community compositions were significantly different in the three geochemical zones and to correlate samples with abiotic characteristics of the sediments. This analysis indicated that microbial communities from all three zones were distinct from one another and that variables such as sulfate concentration, hydrate saturation of the nearest gas hydrate layer, and depth (or unmeasured variables associated with depth e.g. temperature, pressure) were correlated to differences between the three zones. The archaeal anaerobic methanotrophs typically attributed to performing anaerobic oxidation of methane were not detected in the SMTZ; however, the marine benthic group-B, which is often found in SMTZ, was detected. Within the GHSZ, samples that were typically closer to layers that contained higher hydrate saturation had indicator sequences related to Vibrio-type taxa. These results suggest that the biogeographic patterns of microbial communities in marine sediments are distinct based on geochemical zones defined by methane.« less

Pleistocene reduction of polar ice caps: Evidence from Cariaco Basin marine sediments

USGS Publications Warehouse

Poore, R.Z.; Dowsett, H.J.

2001-01-01

Sea level is projected to rise between 13 and 94 cm over the next 100 yr due to continued climate warming. The sea-level projections assume that polar ice sheets will remain stable or even increase on time scales of centuries, but controversial geologic evidence suggests that current polar ice sheets have been eliminated or greatly reduced during previous Pleistocene interglacials indicating that modern polar ice sheets have become unstable within the natural range of interglacial climates. Sea level may have been more than 20 m higher than today during a presumably very warm interglacial about 400 ka during marine isotope stage 11. Because of the implications for future sea level rise, additional study of the conflicting evidence for warmer conditions and higher sea level during marine isotope stage 11 is needed. Here we present microfossil and isotopic data from marine sediments of the Cariaco Basin supporting the interpretation that global sea level was 10-20 m higher than today during marine isotope stage 11. The increased sea level requires reduction in modern polar ice sheets and is consistent with the interpretation that the West Antarctic ice sheet and the Greenland ice sheet were absent or greatly reduced during marine isotope stage 11. Our results show a warm marine isotope stage 11 interglacial climate with sea level as high as or above modern sea level that lasted for 25 to 30 k.y. Variations in Earth's orbit around the sun (Milankovitch cycles) are considered to be a primary external force driving glacial-interglacial cycles. Current and marine isotope stage 11 Milankovitch forcing are very similar, suggesting that the present interglacial (Holocene) that began ca. 10 ka will continue for another 15 to 20 k.y. Therefore any anthropogenic climate warming will accelerate the natural process toward reduction in polar ice sheets. The potential for increased rates of sea level rise related to polar ice sheet decay should be considered as a potential natural

Distribution of heavy metals in marine bivalves, fish and coastal sediments in the Gulf and Gulf of Oman.

PubMed

de Mora, Stephen; Fowler, Scott W; Wyse, Eric; Azemard, Sabine

2004-09-01

An assessment of marine contamination due to heavy metals was made in the Gulf and Gulf of Oman based on marine biota (fish and various bivalves) and coastal sediment collected in Bahrain, Oman, Qatar, and the United Arab Emirates (UAE) during 2000-2001. Sediment metal loadings were generally not remarkable, although hot spots were noted in Bahrain (Cu, Hg, Pb, Zn) and on the east coast of the UAE (As, Co, Cr, Ni). Concentrations of As and Hg were typically low in sediments and the total Hg levels in top predator fish commonly consumed in the region were < 0.5 microg g(-1) and posed no threat to public health. Very high Cd concentrations (up to 195 microg g(-1)) in the liver of some fish from southern Oman may result from food-chain bioaccumulation of elevated Cd levels brought into the productive surface waters by upwelling in the region. Very high As concentrations (up to 156 microg g(-1)) were measured in certain bivalve species from the region. Although not certain, the As is probably derived from natural origins rather than anthropogenic contamination. Copyright 2004 Elsevier Ltd.

Diversity and bioprospecting of culturable actinomycetes from marine sediment of the Yellow Sea, China.

PubMed

Xiong, Zhi-Qiang; Liu, Qiao-Xia; Pan, Zhao-Long; Zhao, Na; Feng, Zhi-Xiang; Wang, Yong

2015-03-01

Marine actinomycetes are a potential source of a wide variety of bioactive natural products. In this work, seven pretreatments, three selective isolation media, and five artificial seawater concentrations were used to isolate actinomycetes from the sediments collected from Yellow Sea, China. Statistical analysis showed that only the isolation medium strongly affected the total and bioactive numbers of actinomycete isolates. A total of 613 actinobacterial strains were isolated and screened for antimicrobial activities; 154 isolates showed activity against at least one of nine test drug-resistant microorganisms. Eighty-nine representatives with strong antimicrobial activity were identified phylogenetically based on 16S rRNA gene sequencing, which were assigned to five different actinomycete genera Streptomyces, Kocuria, Saccharomonospora, Micromonospora, and Nocardiopsis. Using PCR-based screening for six biosynthetic genes of secondary metabolites, all 45 isolates with acute activity have at least one biosynthetic gene, 28.8 % of which possess more than three biosynthetic genes. As a case, strain SMA-1 was selected for antimicrobial natural product discovery. Three diketopiperazine dimers including a new compound iso-naseseazine B (1) and two known compounds naseseazine B (2) and aspergilazine A (3) were isolated by bioassay-guided separation. These results suggested that actinomycetes from marine sediments are a potential resource of novel secondary metabolites and drugs.

Isotopic Constraints on the Sources and Associations of Organic Compounds in Marine Sediments

DTIC Science & Technology

2006-02-01

international standard for 14C dating, Standard Reference Material 4990B " Oxalic Acid". Routine precision for 813 C and Aa4 C measurements are --0.1 and...determined by their depositional settings. Group ’a’ includes organic-rich marine sediments from Guaymas basin (GB), a hydrothermal system with active...is the per mille (%0o) deviation from the international standard for 14C dating, Standard Reference Material 4990B " Oxalic Acid". Precision for V𔃽 C

A New Sensitive GC-MS-based Method for Analysis of Dipicolinic Acid and Quantifying Bacterial Endospores in Deep Marine Subsurface Sediment

NASA Astrophysics Data System (ADS)

Fang, J.

2015-12-01

Marine sediments cover more than two-thirds of the Earth's surface and represent a major part of the deep biosphere. Microbial cells and microbial activity appear to be widespread in these sediments. Recently, we reported the isolation of gram-positive anaerobic spore-forming piezophilic bacteria and detection of bacterial endospores in marine subsurface sediment from the Shimokita coalbed, Japan. However, the modern molecular microbiological methods (e.g., DNA-based microbial detection techniques) cannot detect bacterial endospore, because endospores are impermeable and are not stained by fluorescence DNA dyes or by ribosomal RNA staining techniques such as catalysed reporter deposition fluorescence in situ hybridization. Thus, the total microbial cell abundance in the deep biosphere may has been globally underestimated. This emphasizes the need for a new cultivation independent approach for the quantification of bacterial endospores in the deep subsurface. Dipicolinic acid (DPA, pyridine-2,6-dicarboxylic acid) is a universal and specific component of bacterial endospores, representing 5-15wt% of the dry spore, and therefore is a useful indicator and quantifier of bacterial endospores and permits to estimate total spore numbers in the subsurface biosphere. We developed a sensitive analytical method to quantify DPA content in environmental samples using gas chromatography-mass spectrometry. The method is sensitive and more convenient in use than other traditional methods. We applied this method to analyzing sediment samples from the South China Sea (obtained from IODP Exp. 349) to determine the abundance of spore-forming bacteria in the deep marine subsurface sediment. Our results suggest that gram-positive, endospore-forming bacteria may be the "unseen majority" in the deep biosphere.

Mercury speciation in sediments at a municipal sewage sludge marine disposal site.

PubMed

Shoham-Frider, E; Shelef, G; Kress, N

2007-12-01

Mercury speciation was performed in excess activated sewage sludge (ASS) and in marine sediments collected at the AAS disposal site off the Mediterranean coast of Israel in order to characterize the spatial and vertical distribution of different mercury species and assess their environmental impact. Total Hg (HgT) concentrations ranged between 0.19 and 1003ng/g at the polluted stations and 5.7 and 72.8ng/g at the background station, while the average concentration in ASS was 1181+/-273ng/g. Only at the polluted stations did HgT concentrations decrease exponentially with sediment depth, reaching background values at 16-20cm, the vertical distribution resulting from mixing of natural sediment with ASS solids and bioturbation by large populations of polycheates. Average Methyl Hg (MeHg) concentration in ASS was 39.7+/-7.1ng/g, ca. 3% of the HgT concentration, while the background concentrations ranged between 0.1 and 0.61ng/g. MeHg concentrations in surficial polluted sediments were 0.7-5.9ng/g (ca. 0.5% of the HgT) and decreased vertically, similar to HgT. A positive correlation between MeHg and Hg only at the polluted stations, higher MeHg concentrations at the surface of the sediment and not below the redoxline, and no seasonality in the concentrations suggest that the MeHg originated from the ASS and not from in situ methylation. By doing selective extractions, we found that ca. 80% of the total Hg in ASS and polluted sediments was strongly bound to amorphous organo-sulfur and to inorganic sulfide species that are not bioavailable. The fractions with potential bioaccessible Hg had maximal concentrations in the range in which biotic effects should be expected. Therefore, although no bioaccumulation was found in the biota in the area, the concentration in the polluted sediments are not negligible and should be carefully monitored.

Transfer of radionuclides from high polluted bottom sediments to marine organisms through benthic food chain in post Fukushima period

NASA Astrophysics Data System (ADS)

Bezhenar, Roman; Jung, Kyung Tae; Maderich, Vladimir; Willemsen, Stefan; de With, Govert; Qiao, Fangli

2015-04-01

A catastrophic earthquake and tsunami occurred on March 11, 2011 and severely damaged the Fukushima Daiichi Nuclear Power Plant (FDNPP) that resulted in an uncontrolled release of radioactivity into air and ocean. Around 80% of the radioactivity released due to the FDNPP accident in March-April 2011 was either directly discharged into the ocean or deposited onto the ocean surface from the atmosphere. A large amount of long-lived radionuclides (mainly Cs-137) were released into the environment. The concentration of radionuclides in the ocean reached a maximum in mid-April of 2011, and then gradually decreased. From 2011 the concentration of Cs-137 in water essentially fell except the area around the FDNPP where leaks of contaminated water are continued. However, in the bottom sediment high concentrations of Cs-137 were found in the first months after the accident and slowly decreased with time. Therefore, it should be expected that a time delay is found of sediment-bound radionuclides in marine organisms. For the modeling of radionuclide transfer from highly polluted bottom sediments to marine organisms the dynamical food chain model BURN-POSEIDON (Heling et al, 2002; Maderich et al., 2014) was extended. In this model marine organisms are grouped into a limited number of classes based on their trophic level and type of species. These include: phytoplankton, zooplankton, fishes (two types: piscivorous and non-piscivorous), crustaceans, and molluscs for pelagic food chain and bottom sediment invertebrates, demersal fishes and bottom predators for benthic food chain and whole water column predators feeding by pelagial and benthic fishes. Bottom invertebrates consume organic parts of bottom sediments with adsorbed radionuclides which then migrate through the food chain. All organisms take radionuclides directly from water as well as via food. In fishes where radioactivity is not homogeneously distributed over all tissues of the organism, it is assumed that radionuclide

Methymercury Formation in Marine and Freshwater Systems: Sediment Characteristics, Microbial Activity and SRB Phylogeny Control Formation Rates and Food-Chain Exposure

NASA Astrophysics Data System (ADS)

King, J. K.; Saunders, F. M.

2004-05-01

Mercury research in freshwater and marine systems suggests that sediment characteristics such as organic substrate, mercury speciation, and sulfate/sulfide concentrations influence availability of inorganic mercury for methylation. Similarly, sediment characteristics also influence sulfate-reducing bacterial (SRB) respiration as well as the presence/distribution of phylogenetic groups responsible for mercury methylation. Our work illustrates that the process of methylmercury formation in freshwater and marine systems are not dissimilar. Rather, the same geochemical parameters and SRB phylogenetic groups determine the propensity for methylmercury formation and are applicable in both fresh- and marine-water systems. The presentation will include our integration of sediment geochemical and microbial parameters affecting mercury methylation in specific freshwater and marine systems. Constructed wetlands planted with Schoenoplectus californicus and amended with gypsum (CaSO4) have demonstrated a capacity to remove inorganic mercury from industrial outfalls. However, bioaccumulation studies of periphyton, eastern mosquitofish (Gambusia holbrooki) and lake chubsucker (Erimyzon sucetta) were conducted in order to ascertain the availability of wetland-generated methylmercury to biota. Total mercury concentrations in mosquitofish from non-sulfate treated controls and the reference location were significantly lower than those from the low and high sulfate treatments while mean total mercury concentrations in lake chubsuckers were also significantly elevated in the high sulfate treatment compared to the low sulfate, control and reference populations. Methylmercury concentrations in periphyton also corresponded with mercury levels found in the tissue of the lake chubsuckers, and these findings fit well given the trophic levels identified for both species of fish. Overall, data from this study suggest that the initial use of gypsum to accelerate the maturity of a constructed

[Characterization of microbial activities in marine mudflat sediment using FDA hydrolase analysis].

PubMed

Liu, Ye; Zou, Li; Liu, Lu; Gao, Dong-Mei

2013-10-01

A method based on fluorescence spectrometry was developed to detect the microbial activities in marine mudflat sediment, where is characterized by high salinity, complex organic compounds and low microbial biomass. This paper optimized the sample extracts, the detection equipment for reaction products, the pretreatment methods, and the experimental conditions. The optimal procedure is described as following. Fresh sediment was first extracted with sterilized and aged seawater, followed by the addition of Tween-80 solution, then uniformly dispersed by thorough oscillating, and kept steady for precipitation. After filtration through a sterilized membrane (1. 2 microm, sterilized in boiling water repeatedly) , the supernatant was supplemented with an appropriate amount of FDA solution and allowed to react in dark for 180 min at temperature ranged 25-30 degrees C . The reaction was terminated by the addition of acetone, and the fluorescence intensity of the reaction mixture was measured within 25 min using a molecular fluorescence photometer at an excitation wavelength of 488 nm and an emission wavelength of 530 nm, and the detection range of this method (dry weight) was 3.0 x10(3)-1. 1 x 10(5) ind.g-1. The microbial activity was reported as fluorescence content in per unit sediment mass (microg.g-1, dry weight).

Evaluation of cytotoxicity, genotoxicity and teratogenicity of marine sediments from Qingdao coastal areas using in vitro fish cell assay, comet assay and zebrafish embryo test.

PubMed

Yang, Fan; Zhang, Qianqian; Guo, Huarong; Zhang, Shicui

2010-10-01

Marine sediments are often a final sink for numerous anthropogenic contaminants and may impose serious effects on benthic organisms and ecosystem. An in vitro cell assay using a cell line derived from flounder gill (FG) cells, an in vitro comet assay in FG cells, and an in vitro zebrafish embryo assay were used to evaluate the in vitro cytotoxicity (measured by MTT reduction), genotoxicity and teratogenicity of crude sediment extracts of Li Cang (LC), Zhan Qiao (ZQ) and Olympic Sailing Center (OSC) from Qingdao coastal area. Sediments from the three sites displayed different cytotoxicity, genotoxicity and teratogenicity potencies; however, all three assays yielded similar LOECs (lowest observed effect concentration) for each site, suggesting that the assays were equally sensitive to and suitable for initial screening of the LOECs of marine sediments. The cytotoxicity, genotoxicity and teratogenicity for these three sampling sites were in the same order of LC>ZQ>OSC, indicating different degrees of contamination. Interestingly, trials with the three sediment extracts at the doses inducing a similar cytotoxicity as evaluated with MTT reduction did not produce similar genotoxicity and teratogenicity, with the genotoxic and teratogenic activities of LC and ZQ extracts being markedly higher than those of OSC sediments. These findings indicate that cytotoxicity does not form a fully equivalent toxicity index with that of genotoxicity and teratogenicity. Therefore, in order to assess the true toxic potential of marine sediments, all three assays should be performed. Analysis of 16 EPA (US Environmental Protection Agency) priority PAHs in these three sediment samples showed a clear correlation between PAH concentrations and sediment toxicities, with a higher PAH content corresponding to higher toxicity although PAHs are surely not the only cause. Copyright © 2010 Elsevier Ltd. All rights reserved.

Marine hydrogeology: recent accomplishments and future opportunities

NASA Astrophysics Data System (ADS)

Fisher, A. T.

2005-03-01

Marine hydrogeology is a broad-ranging scientific discipline involving the exploration of fluid-rock interactions below the seafloor. Studies have been conducted at seafloor spreading centers, mid-plate locations, and in plate- and continental-margin environments. Although many seafloor locations are remote, there are aspects of marine systems that make them uniquely suited for hydrologic analysis. Newly developed tools and techniques, and the establishment of several multidisciplinary programs for oceanographic exploration, have helped to push marine hydrogeology forward over the last several decades. Most marine hydrogeologic work has focused on measurement or estimation of hydrogeologic properties within the shallow subsurface, but additional work has emphasized measurements of local and global fluxes, fluid source and sink terms, and quantitative links between hydrogeologic, chemical, tectonic, biological, and geophysical processes. In addition to summarizing selected results from a small number of case studies, this paper includes a description of several new experiments and programs that will provide outstanding opportunities to address fundamental hydrogeologic questions within the seafloor during the next 20-30 years. L'hydrogéologie marine est une large discipline scientifique impliquant l' exploration des interactions entre les fluides et les roches sous les fonds marins. Des études ont été menées dans les différents environnements sous-marins (zone abyssale, plaque océanique, marges continentales). Bien que de nombreux fonds marins soient connus, il existe des aspects des systèmes marins qui les rendent inadaptés à l'analyse hydrologique. De nouveaux outils et techniques, et la mise en oeuvre de nombreux programmes multidisciplinaires d'exploration océanographique, ont aidé à pousser en avant l'hydrogéologie marine ces dix dernières années. La plus part des études hydrogéologiques se sont concentrées jusqu'à présent sur la mesure ou

EVALUATION OF A FIRST-ORDER MODEL FOR THE PREDICTION OF THE BIOACCUMULATION OF PCBS AND DDT FROM SEDIMENT INTO THE MARINE DEPOSIT-FEEDING CLAM MACOMA NASUTA

EPA Science Inventory

A first-order model for predicting contaminant bioaccumulation from sediments into benthic invertebrates was validated using a marine deposit-feeding clam, Macoma nasuta, exposed to polychlorobiphenyl (PCB)-spiked and dichlorodiphenyltrichloroethane (DDT)-contaminated sediments. ...

Larval development ratio test with the calanoid copepod Acartia tonsa as a new bioassay to assess marine sediment quality.

PubMed

Buttino, Isabella; Vitiello, Valentina; Macchia, Simona; Scuderi, Alice; Pellegrini, David

2018-03-01

The copepod Acartia tonsa was used as a model species to assess marine sediment quality. Acute and chronic bioassays, such as larval development ratio (LDR) and different end-points were evaluated. As a pelagic species, A. tonsa is mainly exposed to water-soluble toxicants and bioassays are commonly performed in seawater. However, an interaction among A. tonsa eggs and the first larval stages with marine sediments might occur in shallow water environments. Here we tested two different LDR protocols by incubating A. tonsa eggs in elutriates and sediments coming from two areas located in Tuscany Region (Central Italy): Livorno harbour and Viareggio coast. The end-points analyzed were larval mortality (LM) and development inhibition (DI) expressed as the percentage of copepods that completed the metamorphosis from nauplius to copepodite. Aims of this study were: i) to verify the suitability of A. tonsa copepod for the bioassay with sediment and ii) to compare the sensitivity of A. tonsa exposed to different matrices, such as water and sediment. A preliminary acute test was also performed. Acute tests showed the highest toxicity of Livorno's samples (two out of three) compared to Viareggio samples, for which no effect was observed. On the contrary, LDR tests with sediments and elutriates revealed some toxic effects also for Viareggio's samples. Results were discussed with regards to the chemical characterization of the samples. Our results indicated that different end-points were affected in A. tonsa, depending on the matrices to which the copepods were exposed and on the test used. Bioassays with elutriates and sediments are suggested and LDR test could help decision-makers to identify a more appropriate management of dredging materials. Copyright © 2017 Elsevier Inc. All rights reserved.

Can sediments at hydrocarbon seep sites represent a source for marine bioavailable iron? — A case study from the South China Sea

NASA Astrophysics Data System (ADS)

Li, N.; Feng, D.; Chen, D.

2017-12-01

Niu Li1, Dong Feng1,2, and Duofu Chen2,31CAS Key Laboratory of Ocean and Marginal Sea Geology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China. 2Laboratory for Marine Geology, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266061, China. 3Hadal Science and Technology Research Center, College of Marine Sciences, Shanghai Ocean University, Shanghai 201306, China. Iron is an essential micronutrient and commonly considered to be one of the key-limiting factors for biological productivity in many ocean regions. Seafloor Fe supply should be most efficient in suboxic conditions. Recent studies shown that widely spread anoxic environments can develop in hydrocarbon seep sediment and local bottom water, owing to the occurrence of aerobic and/or anaerobic methane oxidation. Under this condition, the iron in sediment can be reduced to dissolved Fe2+ in the ocean. However, questions remain about whether the hydrocarbon seep sediment can represent a source for bioavailable iron to the ocean, and the control factor for the transformation of iron in the sediment remains largely unexplored. For a number of hydrocarbon seeps from the northern and southern South China Sea, the iron speciation, pyrite sulfur isotope, and iron isotope, as well as the major and trace elements are used to constrain the intensity of cold seep, and its impact on transformation of iron in sediment. Samples from both areas show sediment iron lost during the high methane flux conditions, owing to the suboxic conditions cause by aerobic methane oxidation. On the other hand, high sediment iron content accompanied by high sulfur content can be seen during the conditions of high methane flux without the occurrence of aerobic methane oxidation, which is possible ascribed to the anaerobic methane oxidation and the release of iron through seep activity. This study reveals the transformation of iron in the sediment is closely related to the

Defining seascapes for marine unconsolidated shelf sediments in an eastern boundary upwelling region: The southern Benguela as a case study

NASA Astrophysics Data System (ADS)

Karenyi, Natasha; Sink, Kerry; Nel, Ronel

2016-02-01

Marine unconsolidated sediment habitats, the largest benthic ecosystem, are considered physically controlled ecosystems driven by a number of local physical processes. Depth and sediment type are recognised key drivers of these ecosystems. Seascape (i.e., marine landscape) habitat classifications are based solely on consistent geophysical features and provide an opportunity to define unconsolidated sediment habitats based on processes which may vary in distribution through space and time. This paper aimed to classify unconsolidated sediment seascapes and explore their diversity in an eastern boundary upwelling region at the macro-scale, using the South African west coast as a case study. Physical variables such as sediment grain size, depth and upwelling-related variables (i.e., maximum chlorophyll concentration, austral summer bottom oxygen concentration and sediment organic carbon content) were included in the analyses. These variables were directly measured through sampling, or collated from existing databases and the literature. These data were analysed using multivariate Cluster, Principal Components Ordination and SIMPER analyses (in PRIMER 6 + with PERMANOVA add-in package). There were four main findings; (i) eight seascapes were identified for the South African west coast based on depth, slope, sediment grain size and upwelling-related variables, (ii) three depth zones were distinguished (inner, middle and outer shelf), (iii) seascape diversity in the inner and middle shelves was greater than the outer shelf, and (iv) upwelling-related variables were responsible for the habitat diversity in both inner and middle shelves. This research demonstrates that the inclusion of productivity and its related variables, such as hypoxia and sedimentary organic carbon, in seascape classifications will enhance the ability to distinguish seascapes on continental shelves, where productivity is most variable.

Distribution of branched GDGTs in surface sediments from the Colville River, Alaska: Implications for the MBT'/CBT paleothermometer in Arctic marine sediments

NASA Astrophysics Data System (ADS)

Hanna, Andrea J. M.; Shanahan, Timothy M.; Allison, Mead A.

2016-07-01

Significant climate fluctuations in the Arctic over the recent past, and additional predicted future temperature changes, highlight the need for high-resolution Arctic paleoclimate records. Arctic coastal environments supplied with terrigenous sediment from Arctic rivers have the potential to provide annual to subdecadal resolution records of climate variability over the last few millennia. A potential tool for paleotemperature reconstructions in these marine sediments is the revised methylation index of branched tetraethers (MBT')/cyclization ratio of branched tetraethers (CBT) proxy based on branched glycerol dialkyl glycerol tetraethers (brGDGTs). In this study, we examine the source of brGDGTs in the Colville River, Alaska, and the adjacent Simpson Lagoon and reconstruct temperatures from Simpson Lagoon sediments to evaluate the applicability of this proxy in Arctic estuarine environments. The Colville catchment soils, fluvial sediments, and estuarine sediments contain statistically similar brGDGT distributions, indicating that the brGDGTs throughout the system are soil derived with little alteration from in situ brGDGT production in the river or coastal waters. Temperatures reconstructed from the MBT'/CBT indices for surface samples show good agreement with regional summer (June through September) temperatures, suggesting a seasonal bias in Arctic temperature reconstructions from the Colville system. In addition, we reconstruct paleotemperatures from an estuarine sediment core that spans the last 75 years, revealing an overall warming trend in the twentieth century that is consistent with trends observed in regional instrumental records. These results support the application of this brGDGT-based paleotemperature proxy for subdecadal-scale summer temperature reconstructions in Arctic estuaries containing organic material derived from sediment-laden, episodic rivers.

The occurrence and distribution of uronic acids and sugar methyl ethers in sediment trap materials and sediments of two coastal marine environments

NASA Astrophysics Data System (ADS)

Bergamaschi, Brian A.; Walters, Jeffrey S.; Hedges, John I.

1999-02-01

Although recent research has indicated that bacteria may contribute an important fraction of biochemical residues in terrestrial and marine environments, it is difficult for geochemists to identify contributions from these ubiquitous and biochemically diverse organisms. Previous studies have suggested uronic acids and O-methyl sugars may be useful indicators of microbial abundance and activity, but have been limited primarily to analyses of a small number of isolated samples. We report here comparative distributions of O-methyl sugars, uronic acids, and aldoses in sediment trap material and sediments from Dabob Bay, WA and nearby Saanich Inlet, BC, where temporal and spatial trends may be used together with well-established patterns in other biochemicals to identify bacterial contributions against the background of other carbohydrate sources. O-methyl sugars and uronic acids were important contributors to the overall flux and burial of polysaccharide material in Dabob Bay and Saanich Inlet, composing ≤12 wt% of the total carbohydrate yields from sediment trap and sediment samples. O-methyl sugars accounted for an average of 5% of the carbohydrate yields from sediment trap materials and sediments, but were found rarely and only in low abundance in vascular plant tissues, phytoplankton, and kelp. In contrast, uronic acids were abundant products of sediment trap material and sediments, as well as vascular plant tissues, where in some cases they predominated among all carbohydrates. Uronic acid abundance in sediment trap material averaged 3% and ranged to >6% of total carbohydrate yields. The persistence of total minor sugar yields in water column collections from Dabob Bay throughout the seasonal cycle indicated they had a primary source that was not directly related to plankton bloom cycles nor pulsed inputs of vascular plant remains. Subsurface maxima in total minor sugar yields (and several individual components) within sediment cores from both sites indicate in

Anaerobic degradation of cyclohexane by sulfate-reducing bacteria from hydrocarbon-contaminated marine sediments.

PubMed

Jaekel, Ulrike; Zedelius, Johannes; Wilkes, Heinz; Musat, Florin

2015-01-01

The fate of cyclohexane, often used as a model compound for the biodegradation of cyclic alkanes due to its abundance in crude oils, in anoxic marine sediments has been poorly investigated. In the present study, we obtained an enrichment culture of cyclohexane-degrading sulfate-reducing bacteria from hydrocarbon-contaminated intertidal marine sediments. Microscopic analyses showed an apparent dominance by oval cells of 1.5 × 0.8 μm. Analysis of a 16S rRNA gene library, followed by whole-cell hybridization with group- and sequence-specific oligonucleotide probes showed that these cells belonged to a single phylotype, and were accounting for more than 80% of the total cell number. The dominant phylotype, affiliated with the Desulfosarcina-Desulfococcus cluster of the Deltaproteobacteria, is proposed to be responsible for the degradation of cyclohexane. Quantitative growth experiments showed that cyclohexane degradation was coupled with the stoichiometric reduction of sulfate to sulfide. Substrate response tests corroborated with hybridization with a sequence-specific oligonucleotide probe suggested that the dominant phylotype apparently was able to degrade other cyclic and n-alkanes, including the gaseous alkane n-butane. Based on GC-MS analyses of culture extracts cyclohexylsuccinate was identified as a metabolite, indicating an activation of cyclohexane by addition to fumarate. Other metabolites detected were 3-cyclohexylpropionate and cyclohexanecarboxylate providing evidence that the overall degradation pathway of cyclohexane under anoxic conditions is analogous to that of n-alkanes.

In situ DNA hybridized chain reaction (FISH-HCR) as a better method for quantification of bacteria and archaea within marine sediment

NASA Astrophysics Data System (ADS)

Buongiorno, J.; Lloyd, K. G.; Shumaker, A.; Schippers, A.; Webster, G.; Weightman, A.; Turner, S.

2015-12-01

Nearly 75% of the Earth's surface is covered by marine sediment that is home to an estimated 2.9 x 1029 microbial cells. A substantial impediment to understanding the abundance and distribution of cells within marine sediment is the lack of a consistent and reliable method for their taxon-specific quantification. Catalyzed reporter fluorescent in situ hybridization (CARD-FISH) provides taxon-specific enumeration, but this process requires passing a large enzyme through cell membranes, decreasing its precision relative to general cell counts using a small DNA stain. In 2015, Yamaguchi et al. developed FISH hybridization chain reaction (FISH-HCR) as an in situ whole cell detection method for environmental microorganisms. FISH-HCR amplifies the fluorescent signal, as does CARD-FISH, but it allows for milder cell permeation methods that might prevent yield loss. To compare FISH-HCR to CARD-FISH, we examined bacteria and archaea cell counts within two sediment cores, Lille Belt (~78 meters deep) and Landsort Deep (90 meters deep), which were retrieved from the Baltic Sea Basin during IODP Expedition 347. Preliminary analysis shows that CARD-FISH counts are below the quantification limit for most depths across both cores. By contrast, quantification of cells was possible with FISH-HCR in all examined depths. When quantification with CARD-FISH was above the limit of detection, counts with FISH-HCR were up to 11 fold higher for Bacteria and 3 fold higher for Archaea from the same sediment sample. Further, FISH-HCR counts follow the trends of on board counts nicely, indicating that FISH-HCR may better reflect the cellular abundance within marine sediment than other quantification methods, including qPCR. Using FISH-HCR, we found that archaeal cell counts were on average greater than bacterial cell counts, but within the same order of magnitude.

Effects of specific inhibitors on anammox and denitrification in marine sediments.

PubMed

Jensen, Marlene Mark; Thamdrup, Bo; Dalsgaard, Tage

2007-05-01

The effects of three metabolic inhibitors (acetylene, methanol, and allylthiourea [ATU]) on the pathways of N2 production were investigated by using short anoxic incubations of marine sediment with a 15N isotope technique. Acetylene inhibited ammonium oxidation through the anammox pathway as the oxidation rate decreased exponentially with increasing acetylene concentration; the rate decay constant was 0.10+/-0.02 microM-1, and there was 95% inhibition at approximately 30 microM. Nitrous oxide reduction, the final step of denitrification, was not sensitive to acetylene concentrations below 10 microM. However, nitrous oxide reduction was inhibited by higher concentrations, and the sensitivity was approximately one-half the sensitivity of anammox (decay constant, 0.049+/-0.004 microM-1; 95% inhibition at approximately 70 microM). Methanol specifically inhibited anammox with a decay constant of 0.79+/-0.12 mM-1, and thus 3 to 4 mM methanol was required for nearly complete inhibition. This level of methanol stimulated denitrification by approximately 50%. ATU did not have marked effects on the rates of anammox and denitrification. The profile of inhibitor effects on anammox agreed with the results of studies of the process in wastewater bioreactors, which confirmed the similarity between the anammox bacteria in bioreactors and natural environments. Acetylene and methanol can be used to separate anammox and denitrification, but the effects of these compounds on nitrification limits their use in studies of these processes in systems where nitrification is an important source of nitrate. The observed differential effects of acetylene and methanol on anammox and denitrification support our current understanding of the two main pathways of N2 production in marine sediments and the use of 15N isotope methods for their quantification.

Sources and reactivities of marine-derived organic matter in coastal sediments as determined by alkaline CuO oxidation

NASA Astrophysics Data System (ADS)

Goñi, Miguel A.; Hedges, John I.

1995-07-01

Alkaline CuO oxidation of ubiquitous biochemicals such as proteins, polysaccharides, and lipids, yields specific products, including fatty acids, diacids, and carboxylated phenols. Oxidation of a variety of marine organisms, including macrophytes, phytoplankton, zooplankton, and bacteria, yields these CuO products in characteristic patterns that can often differentiate these biological sources. Sediments from Skan Bay (Unalaska Island, Alaska) display organic carbon and total nitrogen profiles which are consistent with three kinetically distinct pools of organic matter. The CuO fingerprints of these sediments distinguish these three pools at the molecular level, indicating a highly labile, fatty acid-rich surface organic layer of likely bacterial origin, intermediately reactive kelp debris and a background of phytoplankton remains that predominates at depth. The CuO method, which has been previously applied only to characterize cutin and lignin constituents of vascular land plants, also provides information on other types of abundant biochemicals, including those indicative of marine sources.

Radioactivity and metal concentrations in marine sediments associated with mining activities in Ierissos Gulf, North Aegean Sea, Greece.

PubMed

Pappa, F K; Tsabaris, C; Ioannidou, A; Patiris, D L; Kaberi, H; Pashalidis, I; Eleftheriou, G; Androulakaki, E G; Vlastou, R

2016-10-01

Marine sediment samples were collected from Ierissos Gulf, N Aegean Sea, close to the coastal mining facilities. Measurements of radionuclide and metal concentrations, mineral composition and grain size distribution were performed. The concentrations of (226)Ra, (235)U and trace metals showed enhanced values in the port of Stratoni compared with those obtained near to Ierissos port. The dose rates received by marine biota were also calculated by the ERICA Assessment Tool and the results indicated no significant radiological risk. Copyright © 2016 Elsevier Ltd. All rights reserved.

Diversity of Microbial Communities and Quantitative Chemodiversity in Layers of Marine Sediment Cores from a Causeway (Kaichu-Doro) in Okinawa Island, Japan.

PubMed

Soliman, Taha; Reimer, James D; Yang, Sung-Yin; Villar-Briones, Alejandro; Roy, Michael C; Jenke-Kodama, Holger

2017-01-01

Microbial community diversity and chemodiversity were investigated in marine sediments adjacent to the Okinawan "Kaichu-Doro" Causeway, which was constructed 46 years ago to connect a group of four islands (Henza-jima, Miyagi-jima, Ikei-jima, Hamahiga-jima) to the Okinawan main island. This causeway was not built on pilings, but by land reclamation; hence, it now acts as a long, thin peninsula. The construction of this causeway was previously shown to have influenced the surrounding marine ecosystem, causing ecosystem fragmentation and loss of water circulation. In this study, we collected sediment cores ( n = 10) from five paired sites in 1 m water depths. Each pair of sites consisted of one site each on the immediate north and south sides of the causeway. Originally the members of each pair were much closer to each other (<150 m) than to other pairs, but now the members of each pair are isolated by the causeway. Each core was 60-80 cm long and was divided into 15-cm layers. We examined the vertical diversity of microbial communities and chemical compounds to determine the correlation between chemodiversity and microbial communities among marine sediment cores and layers. Principal coordinate analyses (PCoA) of detected compounds and of bacterial and archaeal operational taxonomic units (OTUs) revealed that the north and south sides of the causeway are relatively isolated, with each side having unique microbial OTUs. Additionally, some bacterial families (e.g., Acidaminobacteraceae, Rhizobiaceae, and Xanthomonadaceae) were found only on the south side of Kaichu-Doro. Interestingly, we found that the relative abundance of OTUs for some microbial families increased from top to bottom, but this was reversed in some other families. We conclude that the causeway has altered microbial community composition and metabolite profiles in marine sediments.

Non-destructive X-ray Computed Tomography (XCT) Analysis of Sediment Variance in Marine Cores

NASA Astrophysics Data System (ADS)

Oti, E.; Polyak, L. V.; Dipre, G.; Sawyer, D.; Cook, A.

2015-12-01

Benthic activity within marine sediments can alter the physical properties of the sediment as well as indicate nutrient flux and ocean temperatures. We examine burrowing features in sediment cores from the western Arctic Ocean collected during the 2005 Healy-Oden TransArctic Expedition (HOTRAX) and from the Gulf of Mexico Integrated Ocean Drilling Program (IODP) Expedition 308. While traditional methods for studying bioturbation require physical dissection of the cores, we assess burrowing using an X-ray computed tomography (XCT) scanner. XCT noninvasively images the sediment cores in three dimensions and produces density sensitive images suitable for quantitative analysis. XCT units are recorded as Hounsfield Units (HU), where -999 is air, 0 is water, and 4000-5000 would be a higher density mineral, such as pyrite. We rely on the fundamental assumption that sediments are deposited horizontally, and we analyze the variance over each flat-lying slice. The variance describes the spread of pixel values over a slice. When sediments are reworked, drawing higher and lower density matrix into a layer, the variance increases. Examples of this can be seen in two slices in core 19H-3A from Site U1324 of IODP Expedition 308. The first slice, located 165.6 meters below sea floor consists of relatively undisturbed sediment. Because of this, the majority of the sediment values fall between 1406 and 1497 HU, thus giving the slice a comparatively small variance of 819.7. The second slice, located 166.1 meters below sea floor, features a lower density sediment matrix disturbed by burrow tubes and the inclusion of a high density mineral. As a result, the Hounsfield Units have a larger variance of 1,197.5, which is a result of sediment matrix values that range from 1220 to 1260 HU, the high-density mineral value of 1920 HU and the burrow tubes that range from 1300 to 1410 HU. Analyzing this variance allows us to observe changes in the sediment matrix and more specifically capture

Patterns and Processes in Marine Microeukaryotic Community Biogeography from Xiamen Coastal Waters and Intertidal Sediments, Southeast China

PubMed Central

Chen, Weidong; Pan, Yongbo; Yu, Lingyu; Yang, Jun; Zhang, Wenjing

2017-01-01

Microeukaryotes play key roles in the structure and functioning of marine ecosystems. Little is known about the relative importance of the processes that drive planktonic and benthic microeukaryotic biogeography in subtropical offshore areas. This study compares the microeukaryotic community compositions (MCCs) from offshore waters (n = 12) and intertidal sediments (n = 12) around Xiamen Island, southern China, using high-throughput sequencing of 18S rDNA. This work further quantifies the relative contributions of spatial and environmental variables on the distribution of marine MCCs (including total, dominant, rare and conditionally rare taxa). Our results showed that planktonic and benthic MCCs were significantly different, and the benthic richness (6627 OTUs) was much higher than that for plankton (4044 OTUs) with the same sequencing effort. Further, we found that benthic MCCs exhibited a significant distance-decay relationship, whereas the planktonic communities did not. After removing two unique sites (N2 and N3), however, 72% variation in planktonic community was explained well by stochastic processes. More importantly, both the environmental and spatial factors played significant roles in influencing the biogeography of total and dominant planktonic and benthic microeukaryotic communities, although their relative effects on these community variations were different. However, a high proportion of unexplained variation in the rare taxa (78.1–97.4%) and conditionally rare taxa (49.0–81.0%) indicated that more complex mechanisms may influence the assembly of the rare subcommunity. These results demonstrate that patterns and processes in marine microeukaryotic community assembly differ among the different habitats (coastal water vs. intertidal sediment) and different communities (total, dominant, rare and conditionally rare microeukaryotes), and provide novel insight on the microeukaryotic biogeography and ecological mechanisms in coastal waters and

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

PubMed Central

Kubo, Kyoko; Lloyd, Karen G; F Biddle, Jennifer; Amann, Rudolf; Teske, Andreas; Knittel, Katrin

2012-01-01

Members of the highly diverse Miscellaneous Crenarchaeotal Group (MCG) are globally distributed in various marine and continental habitats. In this study, we applied a polyphasic approach (rRNA slot blot hybridization, quantitative PCR (qPCR) and catalyzed reporter deposition FISH) using newly developed probes and primers for the in situ detection and quantification of MCG crenarchaeota in diverse types of marine sediments and microbial mats. In general, abundance of MCG (cocci, 0.4 μm) relative to other archaea was highest (12–100%) in anoxic, low-energy environments characterized by deeper sulfate depletion and lower microbial respiration rates (P=0.06 for slot blot and P=0.05 for qPCR). When studied in high depth resolution in the White Oak River estuary and Hydrate Ridge methane seeps, changes in MCG abundance relative to total archaea and MCG phylogenetic composition did not correlate with changes in sulfate reduction or methane oxidation with depth. In addition, MCG abundance did not vary significantly (P>0.1) between seep sites (with high rates of methanotrophy) and non-seep sites (with low rates of methanotrophy). This suggests that MCG are likely not methanotrophs. MCG crenarchaeota are highly diverse and contain 17 subgroups, with a range of intragroup similarity of 82 to 94%. This high diversity and widespread distribution in subsurface sediments indicates that this group is globally important in sedimentary processes. PMID:22551871

The effect of TBT on the structure of a marine sediment comunity--a Boxcosm study.

PubMed

Dahllöf, I; Agrenius, S; Blanck, H; Hall, P; Magnusson, K; Molander, S

2001-08-01

The effect of tri-n-butyl tin (TBT) on an intact marine sediment community after five months exposure was investigated. Changes in the structure of macro- and meiofauna communities were determined, as well as the functional diversity of the microbial community using BIOLOG microplates for Gram negative bacteria. Development of tolerance in the microbial community was investigated using Pollution Induced Community Tolerance (PICT) experiments with fluxes of nutrients as effect indicators. TBT affected the structure and recruitment of the macro- and meiofauna at nominal additions of 30-137 micromol TBT/m2 sediment. Number of species, diversity, biomass and community similarity was reduced at these concentrations compared to control. Species that molt seemed to be the most tolerant since they were predominant in boxes that had received the highest TBT addition and echinoderms were the most sensitive species. Renewed addition of TBT in PICT experiments with sediment from each boxcosm showed that TBT had an effect on individual nutrient fluxes from all sediments. Analyses of the flux patterns revealed a memory of previous TBT exposure, either due to induced tolerance or other community conditioning.

A chemostratigraphic method to determine the end of impact-related sedimentation at marine-target impact craters (Chesapeake Bay, Lockne, Tvären)

USGS Publications Warehouse

Ormö, Jens; Hill, Andrew C.; Self-Trail, Jean M.

2010-01-01

To better understand the impact cratering process and its environmental consequences at the local to global scale, it is important to know when in the geological record of an impact crater the impact-related processes cease. In many instances, this occurs with the end of early crater modification, leaving an obvious sedimentological boundary between impactites and secular sediments. However, in marine-target craters the transition from early crater collapse (i.e., water resurge) to postimpact sedimentation can appear gradual. With the a priori assumption that the reworked target materials of the resurge deposits have a different chemical composition to the secular sediments we use chemostratigraphy (δ13Ccarb, %Corg, major elements) of sediments from the Chesapeake Bay, Lockne, and Tvären craters, to define this boundary. We show that the end of impact-related sedimentation in these cases is fairly rapid, and does not necessarily coincide with a visual boundary (e.g., grain size shift). Therefore, in some cases, the boundary is more precisely determined by chemostratigraphy, especially carbonate carbon isotope variations, rather than by visual inspection. It is also shown how chemostratigraphy can confirm the age of marine-target craters that were previously determined by biostratigraphy; by comparing postimpact carbon isotope trends with established regional trends.

The Link between Microbial Diversity and Nitrogen Cycling in Marine Sediments Is Modulated by Macrofaunal Bioturbation.

PubMed

Yazdani Foshtomi, Maryam; Braeckman, Ulrike; Derycke, Sofie; Sapp, Melanie; Van Gansbeke, Dirk; Sabbe, Koen; Willems, Anne; Vincx, Magda; Vanaverbeke, Jan

2015-01-01

The marine benthic nitrogen cycle is affected by both the presence and activity of macrofauna and the diversity of N-cycling microbes. However, integrated research simultaneously investigating macrofauna, microbes and N-cycling is lacking. We investigated spatio-temporal patterns in microbial community composition and diversity, macrofaunal abundance and their sediment reworking activity, and N-cycling in seven subtidal stations in the Southern North Sea. Our results indicated that bacteria (total and β-AOB) showed more spatio-temporal variation than archaea (total and AOA) as sedimentation of organic matter and the subsequent changes in the environment had a stronger impact on their community composition and diversity indices in our study area. However, spatio-temporal patterns of total bacterial and β-AOB communities were different and related to the availability of ammonium for the autotrophic β-AOB. Highest bacterial richness and diversity were observed in June at the timing of the phytoplankton bloom deposition, while richness of β-AOB as well as AOA peaked in September. Total archaeal community showed no temporal variation in diversity indices. Distance based linear models revealed that, independent from the effect of grain size and the quality and quantity of sediment organic matter, nitrification and N-mineralization were affected by respectively the diversity of metabolically active β-AOB and AOA, and the total bacteria, near the sediment-water interface. Separate models demonstrated a significant and independent effect of macrofaunal activities on community composition and richness of total bacteria, and diversity indices of metabolically active AOA. Diversity of β-AOB was significantly affected by macrofaunal abundance. Our results support the link between microbial biodiversity and ecosystem functioning in marine sediments, and provided broad correlative support for the hypothesis that this relationship is modulated by macrofaunal activity. We

The Link between Microbial Diversity and Nitrogen Cycling in Marine Sediments Is Modulated by Macrofaunal Bioturbation

PubMed Central

Yazdani Foshtomi, Maryam; Braeckman, Ulrike; Derycke, Sofie; Sapp, Melanie; Van Gansbeke, Dirk; Sabbe, Koen; Willems, Anne; Vincx, Magda; Vanaverbeke, Jan

2015-01-01

Objectives The marine benthic nitrogen cycle is affected by both the presence and activity of macrofauna and the diversity of N-cycling microbes. However, integrated research simultaneously investigating macrofauna, microbes and N-cycling is lacking. We investigated spatio-temporal patterns in microbial community composition and diversity, macrofaunal abundance and their sediment reworking activity, and N-cycling in seven subtidal stations in the Southern North Sea. Spatio-Temporal Patterns of the Microbial Communities Our results indicated that bacteria (total and β-AOB) showed more spatio-temporal variation than archaea (total and AOA) as sedimentation of organic matter and the subsequent changes in the environment had a stronger impact on their community composition and diversity indices in our study area. However, spatio-temporal patterns of total bacterial and β-AOB communities were different and related to the availability of ammonium for the autotrophic β-AOB. Highest bacterial richness and diversity were observed in June at the timing of the phytoplankton bloom deposition, while richness of β-AOB as well as AOA peaked in September. Total archaeal community showed no temporal variation in diversity indices. Macrofauna, Microbes and the Benthic N-Cycle Distance based linear models revealed that, independent from the effect of grain size and the quality and quantity of sediment organic matter, nitrification and N-mineralization were affected by respectively the diversity of metabolically active β-AOB and AOA, and the total bacteria, near the sediment-water interface. Separate models demonstrated a significant and independent effect of macrofaunal activities on community composition and richness of total bacteria, and diversity indices of metabolically active AOA. Diversity of β-AOB was significantly affected by macrofaunal abundance. Our results support the link between microbial biodiversity and ecosystem functioning in marine sediments, and provided

Modelling the cohesive sediment transport in the marine environment: the case of Thermaikos Gulf

NASA Astrophysics Data System (ADS)

Krestenitis, Y. N.; Kombiadou, K. D.; Savvidis, Y. G.

2007-02-01

The transport of fine-grained sediments in the marine environment entails risks of pollutant intrusions from substances absorbed onto the cohesive flocks' surface, gradually released to the aquatic field. These substances include nutrients such as nitrate, phosphate and silicate compounds from drainage from fertilization of adjacent cultivated areas that enter the coastal areas through rivers and streams, or trace metals as remainders from urban and industrial activities. As a consequence, knowledge on the motion and distribution of sediment particles coming from a given pollutant source is expected to provide the 'bulk' information on pollutant distribution, necessary for determining the region of influence of the source and to estimate probable trophic levels of the seawater and potential environmental risks. In that aim a numerical model has been developed to predict the fate of the sediments introduced to the marine environment from different pollution sources, such as river outflows, erosion of the seabed, aeolian transported material and drainage systems. The proposed three-dimensional mathematical model is based on the particle tracking method, according to which matter concentration is expressed by particles, each representing a particular amount of sedimentary mass, passively advected and dispersed by the currents. The processes affecting characteristics and propagation of sedimentary material in the marine environment, incorporated in the parameterization, apart from advection and dispersion, include cohesive sediment and near-bed processes. The movement of the particles along with variations in sedimentary characteristics and state, carried by each particle as personal information, are traced with time. Specifically, concerning transport processes, the local seawater velocity and the particle's settling control advection, whereas the random Brownian motion due to turbulence simulates turbulent diffusion. The vertical stratification of the water-column is

Modelling the cohesive sediment transport in the marine environment: the case of Thermaikos Gulf

NASA Astrophysics Data System (ADS)

Krestenitis, Y. N.; Kombiadou, K. D.; Savvidis, Y. G.

2006-07-01

The transport of fine-grained sediments in the marine environment entails risks of pollutant intrusions from substances absorbed onto the cohesive flocks' surface, gradually released to the aquatic field. These substances include nutrients such as nitrate, phosphate and silicate compounds from drainage from fertilization of adjacent cultivated areas that enter the coastal areas through rivers and streams, or trace metals as remainders from urban and industrial activities. As a consequence, knowledge on the motion and distribution of sediment particles coming from a given pollutant source is expected to provide the ''bulk'' information on pollutant distribution, necessary for determining the region of influence of the source and to estimate probable trophic levels of the seawater and potential environmental risks. In that aim a numerical model has been developed to predict the fate of the sediments introduced to the marine environment from different pollution sources, such as river outflows, erosion of the seabed, aeolian transported material and drainage systems. The proposed three-dimensional mathematical model is based on the particle tracking method, according to which matter concentration is expressed by particles, each representing a particular amount of sedimentary mass, passively advected and dispersed by the currents. The processes affecting characteristics and propagation of sedimentary material in the marine environment, incorporated in the parameterization, apart from advection and dispersion, include cohesive sediment and near-bed processes. The movement of the particles along with variations in sedimentary characteristics and state, carried by each particle as personal information, are traced with time. Specifically, concerning transport processes, the local seawater velocity and the particle's settling control advection, whereas the random Brownian motion due to turbulence simulates turbulent diffusion. The vertical stratification of the water

Levels of Cd, Cu, Pb and V in marine sediments in the vicinity of the Single Buoy Moorings (SBM3) at Mina Al Fahal in the Sultanate of Oman.

PubMed

Al-Husaini, Issa; Abdul-Wahab, Sabah; Ahamad, Rahmalan; Chan, Keziah

2014-06-15

Recently in the Sultanate of Oman, there has been a rapid surge of coastal developments. These developments cause metal contamination, which may affect the habitats and communities at and near the coastal region. As a result, a study was conducted to assess the level of metal contamination and its impact on the marine sediments in the vicinity of the Single Buoy Moorings 3 (SBM3) at Mina Al Fahal in the Sultanate of Oman. Marine subtidal sediment samples were collected from six different stations of the SBM3 for the period ranging from June 2009 to April 2010. These samples were then analyzed for their level and distribution of the heavy metals of cadmium (Cd), copper (Cu), lead (Pb) and vanadium (V). Overall, low concentrations of all four heavy metals were measured from the marine sediments, indicating that the marine at SBM3 is of good quality. Copyright © 2014 Elsevier Ltd. All rights reserved.

Are Sediments a Source of Fukushima Radiocesium for Marine Fauna in Coastal Japan?

NASA Astrophysics Data System (ADS)

Wang, C.; Fisher, N. S.; Baumann, Z.

2016-02-01

The Fukushima nuclear power plant accident in 2011 resulted in the largest accidental release of artificial radionuclides into the world's oceans. Among the fission products released in large quantities, 137Cs has the greatest potential for long-term impacts on marine biota and human consumers of seafood. In particular, some species of bottom fish near Fukushima were very contaminated and had higher radiocesium (134Cs and 137Cs) levels than pelagic fish in the same area, sometimes exceeding Japanese safety limits >4 years after the accident. Benthic invertebrates, many being prey items for bottom fish, show the same slow decrease in radiocesium as sediments, suggesting that contaminated sediment could be a source of radiocesium for benthic fauna. We evaluated the binding of 137Cs to sediments (Kd found to be 44-60 ml g-1) and found that bioturbation by the polychaete Nereis succinea greatly increased the initial release rate of Cs to overlying seawater. We also assessed the bioavailability of dissolved and sediment-bound Cs for deposit-feeding polychaetes, and its subsequent transfer to crabs and fish, and measured the influence of water temperature on Cs accumulation in fish. Assimilation efficiency (AE) of ingested 137Cs ranged from 16% in polychaetes ingesting sediments to 79% in fish ingesting worms. Efflux rate constants ranged from 5% d-1 for killifish to 40% d-1 for polychaetes. Animal absorption and retention of dissolved 137Cs were also measured. These parameters are used to model radiocesium bioaccumulation and trophic transfer in benthic food chains. Our results are consistent with the idea that sediments can be an important source of Cs for benthic food chains and help explain why some species of bottom fish remained more contaminated than pelagic fish in Japanese coastal waters.

Coupling between anammox and autotrophic denitrification for simultaneous removal of ammonium and sulfide by enriched marine sediments.

PubMed

Rios-Del Toro, E Emilia; Cervantes, Francisco J

2016-06-01

In the present study, the capacity of enrichments derived from marine sediments collected from different sites of the Mexican littoral to perform anaerobic ammonium oxidation (anammox) coupled to sulfide-dependent denitrification for simultaneous removal of ammonium and sulfide linked to nitrite reduction was evaluated. Sulfide-dependent denitrification out-competed anammox during the simultaneous oxidation of sulfide and ammonium. Significant accumulation of elemental sulfur (ca. 14-30 % of added sulfide) occurred during the coupling between the two respiratory processes, while ammonium was partly oxidized (31-47 %) due to nitrite limitation imposed in sediment incubations. Nevertheless, mass balances revealed up to 38 % more oxidation of the electron donors available (ammonium and sulfide) than that expected from stoichiometry. Recycling of nitrite, from nitrate produced through anammox, is proposed to contribute to extra oxidation of sulfide, while additional ammonium oxidation is suggested by sulfate-reducing anammox (SR-anammox). The complex interaction between nitrogenous and sulfurous compounds occurring through the concomitant presence of autotrophic denitrification, conventional anammox and SR-anammox may significantly drive the nitrogen and sulfur fluxes in marine environments.

PEaCH4 v.2.0: A modelling platform to predict early diagenetic processes in marine sediments with a focus on biogenic methane - Case study: Offshore Namibia

NASA Astrophysics Data System (ADS)

Arning, Esther T.; Häußler, Steffen; van Berk, Wolfgang; Schulz, Hans-Martin

2016-07-01

The modelling of early diagenetic processes in marine sediments is of interest in marine science, and in the oil and gas industry, here, especially with respect to methane occurrence and gas hydrate formation as resources. Early diagenesis in marine sediments evolves from a complex web of intertwining (bio)geochemical reactions. It comprises microbially catalysed reactions and inorganic mineral-water-gas interactions. A model that will describe and consider all of these reactions has to be complex. However, it should be user-friendly, as well as to be applicable for a broad community and not only for experts in the field of marine chemistry. The presented modelling platform PeaCH4 v.2.0 combines both aspects, and is Microsoft Excel©-based. The modelling tool is PHREEQC (version 2), a computer programme for speciation, batch-reaction, one-dimensional transport, and inverse geochemical calculations. The conceptual PEaCH4 model is based on the conversion of sediment-bound degradable organic matter. PEaCH4 v.2.0 was developed to quantify and predict early diagenetic processes in marine sediments with the focus on biogenic methane formation and its phase behaviour, and allows carbon mass balancing. In regard to the irreversible degradation of organic matter, it comprises a "reaction model" and a "kinetic model" to predict methane formation. Both approaches differ in their calculations and outputs as the "kinetic model" considers the modelling time to integrate temperature dependent biogenic methane formation in its calculations, whereas the "reaction model" simply relies on default organic matter degradation. With regard to the inorganic mineral-water-gas interactions, which are triggered by irreversible degradation of organic matter, PEaCH4 v.2.0 is based on chemical equilibrium thermodynamics, appropriate mass-action laws, and their temperature dependent equilibrium constants. The programme is exemplarily presented with the example of upwelling sediments off Namibia

Marine molluscs in environmental monitoring. III. Trace metals and organic pollutants in animal tissue and sediments

NASA Astrophysics Data System (ADS)

Feldstein, Tamar; Kashman, Yoel; Abelson, Avigdor; Fishelson, Lev; Mokady, Ofer; Bresler, Vladimir; Erel, Yigal

2003-10-01

Concentrations of trace elements and organic pollutants were determined in marine sediments and molluscs from the Mediterranean and Red Sea coasts of Israel. Two bivalve species (Donax trunculus, Pteria aegyptia), two gastropod species (Patella caerulea, Cellana rota) and sediments were sampled at polluted and relatively clean, reference, sites. Along the Mediterranean coast of Israel, sediments and molluscs from Haifa Bay stations were enriched with both organic and trace element contaminants. In the Red Sea, differences between the polluted and reference sites were less pronounced. Bio-concentration factors indicate a significant concentration of Zn, As, Cd, Sn and Pb in animal tissue relative to the concentrations of these elements in the sediments. In contrast, Ce, La and U were not concentrated in molluscs. The trace element results indicate a saturation of the detoxification mechanisms in molluscs from polluted sites. The concentrations of organic pollutants at the same sites are at the lower range of values recorded in other studies. However, synergistic effects between these compounds and between them and metals can lead to acute toxicity.

Formation of carbonatite-related giant rare-earth-element deposits by the recycling of marine sediments

PubMed Central

Hou, Zengqian; Liu, Yan; Tian, Shihong; Yang, Zhiming; Xie, Yuling

2015-01-01

Carbonatite-associated rare-earth-element (REE) deposits are the most significant source of the world’s REEs; however, their genesis remains unclear. Here, we present new Sr-Nd-Pb and C-O isotopic data for Cenozoic carbonatite-hosted giant REE deposits in southwest China. These REE deposits are located along the western margin of the Yangtze Craton that experienced Proterozoic lithospheric accretion, and controlled by Cenozoic strike-slip faults related to Indo-Asian continental collision. The Cenozoic carbonatites were emplaced as stocks or dykes with associated syenites, and tend to be extremely enriched in Ba, Sr, and REEs and have high 87Sr/86Sr ratios (>0.7055). These carbonatites were likely formed by melting of the sub-continental lithospheric mantle (SCLM), which had been previously metasomatized by high-flux REE- and CO2-rich fluids derived from subducted marine sediments. The fertility of these carbonatites depends on the release of REEs from recycled marine sediments and on the intensity of metasomatic REE refertilization of the SCLM. We suggest that cratonic edges, particularly along ancient convergent margins, possess the optimal configuration for generating giant REE deposits; therefore, areas of metamorphic basement bounded or cut by translithospheric faults along cratonic edges have a high potential for such deposits. PMID:26035414

Dating of coastal marine sediments: 210Pb versus 137Cs signal on the Danube-influenced Black Sea shelf

NASA Astrophysics Data System (ADS)

Friedrich, Jana; Laptev, Gennady

2010-05-01

Coastal marine sediments represent a natural archive of pelagic processes, coastal erosion and river discharge of suspended matter. Correct dating of those sediments is a prerequisite for chronological reconstruction of the flux of pollutants and organic matter from the water column to the sediments and hence, the reconstruction of the pollution and eutrophication events. In the reconstruction of the sedimentation history during the pre-industrial and industrial periods, which usually spans the past 100 years, the natural occurring radionuclide 210Pb and the artificial radionuclides 137Cs and 241Am are widely applied tracers. 137Cs is used as an independent time marker for end the atmospheric bomb test fallout in 1963 and the Chernobyl accident in 1986. As the 137Cs signal is often weakened due to its mobility in sediments, 241Am, less mobile than 137Cs and derived from decay the bomb fallout of 241Pu, is used as a second time marker of the 1963 event. The northwestern shelf of the Black Sea has been seriously affected by eutrophication and pollution from the late 1960's to the mid-1990's, largely triggered by Danube River input of nutrients and pollutants. The aim of our study is ultimately to reconstruct the eutrophication history and recycling of nutrients following the deposition of organic matter. The ‘memory effect' of sediment recycling plays a critical role in maintaining eutrophic conditions in enclosed seas such as the Black Sea. Here we present results from sediment cores taken within the Danube River plume on the shallow northwestern shelf of the Black Sea. The cores have been dated in two laboratories to rule out artifacts. The sediment record is repeatedly interrupted by so-called turbidites that consist of stiff clay. The clay horizons display a drop in unsupported 210Pb and 137Cs and a higher signal of supported 210Pb than the non-clay horizons. Below the turbidite, the unsupported 210Pb and 137Cs increase again to values above the turbidite. This

Iron Cycling in Marine Sediments - New Insights from Isotope Analysis on Sequentially Extracted Fe Fractions

NASA Astrophysics Data System (ADS)

Henkel, S.; Kasten, S.; Poulton, S.; Hartmann, J.; Staubwasser, M.

2014-12-01

Reactive Fe (oxyhydr)oxides preferentially undergo early diagenetic cycling and may cause a diffusive flux of dissolved Fe2+ from sediments towards the sediment-water interface. The partitioning of Fe in sediments has traditionally been studied by applying sequential extractions based on reductive dissolution of Fe minerals. We complemented the sequential leaching method by Poulton and Canfield [1] in order to be able to gain δ56Fe data for specific Fe fractions, as such data are potentially useful to study Fe cycling in marine environments. The specific mineral fractions are Fe-carbonates, ferrihydrite + lepidocrocite, goethite + hematite, and magnetite. Leaching was performed with acetic acid, hydroxylamine-HCl, Na-dithionite and oxalic acid. The processing of leachates for δ56Fe analysis involved boiling the samples in HCl/HNO3/H2O2, Fe precipitation and anion exchange column chromatography. The new method was applied to short sediment cores from the North Sea and a bay of King George Island (South Shetland Islands, Antarctica). Downcore mineral-specific variations in δ56Fe revealed differing contributions of Fe (oxyhydr)oxides to redox cycling. A slight decrease in easily reducible Fe oxides correlating with a slight increase in δ56Fe for this fraction with depth, which is in line with progessive dissimilatory iron reduction [2,3], is visible in the top 10 cm of the North Sea core, but not in the antarctic sediments. Less reactive (dithionite and oxalate leachable) fractions did not reveal isotopic trends. The acetic acid-soluble fraction displayed pronounced δ56Fe trends at both sites that cannot be explained by acid volatile sulfides that are also extracted by acetic acid [1]. We suggest that low δ56Fe values in this fraction relative to the pool of easily reducible Fe oxides result from adsorbed Fe(II) that was open to isotopic exchange with oxide surfaces, affirming the experimental results of Crosby el al. [2]. Hence, δ56Fe analyses on marine

Terrestrial and marine biomarker estimates of organic matter sources and distributions in surface sediments from the East China Sea shelf

NASA Astrophysics Data System (ADS)

Xing, Lei; Zhang, Hailong; Yuan, Zineng; Sun, Yao; Zhao, Meixun

2011-07-01

Revealing of the sources and distributions of sedimentary organic matter in the East China Sea (ECS) is important for understanding its carbon cycle, which has significant temporal and spatial variability due to the influences of recent climate changes and anthropogenic activities. In this study, we report the contents of both terrestrial and marine biomarkers including ∑C 27+C 29+C 31n-alkanes (38.6-580 ng/g), C 37 alkenones (5.6-124.6 ng/g), brassicasterol (98-913 ng/g) and dinosterol (125-1521 ng/g) from the surface sediments in the Changjiang River Estuary (CRE) and shelf areas of the ECS. Several indices based on biomarker contents and ratios are calculated to assess the spatial distributions of both terrestrial and marine organic matter in the ECS surface sediments, and these results are compared with organic matter distribution patterns revealed by the δ13C (-20.1‰ to -22.7‰) and C/N ratio (5-7.5) of total organic matter. The contents of terrestrial biomarkers in the ECS surface sediments decrease seaward, controlled mostly by Changjiang River (CR) inputs and surface currents; while higher contents of the two marine biomarkers (brassicasterol and dinosterol) occur in upwelling areas outside the CRE and in the Zhejiang-Fujian coastal zone, controlled mostly by marine productivity. Four proxies, fTerr( δ13C) (the fraction of terrestrial organic matter in TOC estimated by TOC δ13C), odd-alkanes (∑C 27+C 29+C 31n-alkanes), 1/ Pmar-aq ((C 23+C 25+C 29+C 31)/(C 23+C 25) n-alkanes) and TMBR (terrestrial and marine biomarker ratio) (C 27+C 29+C 31n-alkanes)/((C 27+C 29+C 31) n-alkanes+(brassicasterol+dinosterol+alkenones)), reveal a consistent pattern showing the relative contribution of terrestrial organic matter (TOM) is higher in the CRE and along the Zhejiang-Fujian coastline, controlled mostly by CR inputs and currents, but the TOM contribution decreases seaward, as the influences of the CR discharge decrease.

Ca Isotope Geochemistry in Marine Deep Sea Sediments of the Eastern Pacific

NASA Astrophysics Data System (ADS)

Wittke, A.; Gussone, N. C.; Derigs, D.; Schälling, M.; Teichert, B. M.

2017-12-01

Ca isotope ratio analysis (δ44/40Ca) is a powerful tool to investigate diagenetic reactions in marine sedimentary porewater systems, as it is sensitive to processes such as carbonate dissolution, precipitation, recrystallization, ion exchange and deep fluid sources, due to the isotopic difference between dissolved Ca and solid carbonate minerals (e.g. [1];[2]). We analyzed eight sediment cores of the (paleo-) Pacific equatorial age transect. Two sediment cores show decreasing Ca isotope profiles starting at the sediment/water interface with seawater-like values down to sediment-like values due to recrystallization and an increasing in the bottom part again to seawater-like values. The other studied cores show different degrees of flattening of this middle bulge. We interpret this pattern either as an effect of sediment composition and thickness, decreasing recrystallization rates and/or fluid flux or a combination of all of these factors at the respective sampling sites. Element concentration profiles and Sr-isotope variations on some of these sediment cores show a similar behavior, supporting our findings ([3]; [4]). Seawater influx at (inactive) seamounts is supposed to cause seawater-like values at the bottom of the sediment cores by fluids migrating through the oceanic basement (e.g. [5]). While [6] hypothesizes that two seamounts or bathymetric pits are connected, with a recharge and a discharge site [7] say that uptaken fluids could be released through the surrounding seafloor as well due to diffusive exchange with the underlying oceanic crust. Our Ca isotope results combined with a transport reaction model approach support the latter hypothesis. References: [1] Teichert B. M., Gussone N. and Torres M. E. (2009) [2] Ockert C., Gussone N., Kaufhold S. and Teichert B. (2013) [3] Pälike H., Lyle M., Nishi H., Raffi I., Gamage K. and Klaus A. (eds.) (2010) [4] Voigt J., Hathorne E. C., Frank M., Vollstaedt H. and Eisenhauer A. (2015) [5] Villinger H. W

Cenozoic marine geochemistry of thallium deduced from isotopic studies of ferromanganese crusts and pelagic sediments

USGS Publications Warehouse

Rehkamper, M.; Frank, M.; Hein, J.R.; Halliday, A.

2004-01-01

Cenozoic records of Tl isotope compositions recorded by ferromanganese (Fe-Mn) crusts have been obtained. Such records are of interest because recent growth surfaces of Fe-Mn crusts display a nearly constant Tl isotope fractionation relative to seawater. The time-series data are complemented by results for bulk samples and leachates of various marine sediments. Oxic pelagic sediments and anoxic marine deposits can be distinguished by their Tl isotope compositions. Both pelagic clays and biogenic oozes are typically characterized by ??205Tl greater than +2.5, whereas anoxic sediments have ??205Tl of less than -1.5 (??205Tl is the deviation of the 205Tl/203Tl isotope ratio of a sample from NIST SRM 997 Tl in parts per 104). Leaching experiments indicate that the high ??205Tl values of oxic sediments probably reflect authigenic Fe-Mn oxyhydroxides. Time-resolved Tl isotope compositions were obtained from six Fe-Mn crusts from the Atlantic, Indian, and Pacific oceans and a number of observations indicate that these records were not biased by diagenetic alteration. Over the last 25 Myr, the data do not show isotopic variations that significantly exceed the range of Tl isotope compositions observed for surface layers of Fe-Mn crusts distributed globally (??205 Tl=+12.8??1.2). This indicates that variations in deep-ocean temperature were not recorded by Tl isotopes. The results most likely reflect a constant Tl isotope composition for seawater. The growth layers of three Fe-Mn crusts that are older than 25 Ma show a systematic increase of ??205Tl with decreasing age, from about +6 at 60-50 Ma to about +12 at 25 Ma. These trends are thought to be due to variations in the Tl isotope composition of seawater, which requires that the oceans of the early Cenozoic either had smaller output fluxes or received larger input fluxes of Tl with low ??205Tl. Larger inputs of isotopically light Tl may have been supplied by benthic fluxes from reducing sediments, rivers, and/or volcanic

An improved procedure for shipboard enumeration of faecal indicator bacteria in marine sediments from sewage sludge disposal areas.

PubMed

West, P A

1988-04-01

An improved membrane filtration procedure for use on board ship to enumerate Escherichia coli and Group D faecal streptococci in marine sediments is described. Ultrasonication extraction combined with resuscitation of sublethally-injured cells yielded significantly higher counts of E. coli than sediments shaken by hand. Counts of E. coli were also higher on mFC agar (without rosalic acid) after a period of resuscitation on tryptone-soy agar supplemented with 0.1% yeast extract than on a 4% Teepol-lactose medium. Ultrasonication of sediments made no significant difference to counts of Group D faecal streptococci on KF-streptococcus agar. These improved isolation procedures allowed better discrimination of the area affected by sewage sludge at a disposal site off the northeast coast of England.

Multi-isotopic determination of plutonium (239Pu, 240Pu, 241Pu and 242Pu) in marine sediments using sector-field inductively coupled plasma mass spectrometry.

PubMed

Donard, O F X; Bruneau, F; Moldovan, M; Garraud, H; Epov, V N; Boust, D

2007-03-28

Among the transuranic elements present in the environment, plutonium isotopes are mainly attached to particles, and therefore they present a great interest for the study and modelling of particle transport in the marine environment. Except in the close vicinity of industrial sources, plutonium concentration in marine sediments is very low (from 10(-4) ng kg(-1) for (241)Pu to 10 ng kg(-1) for (239)Pu), and therefore the measurement of (238)Pu, (239)Pu, (240)Pu, (241)Pu and (242)Pu in sediments at such concentration level requires the use of very sensitive techniques. Moreover, sediment matrix contains huge amounts of mineral species, uranium and organic substances that must be removed before the determination of plutonium isotopes. Hence, an efficient sample preparation step is necessary prior to analysis. Within this work, a chemical procedure for the extraction, purification and pre-concentration of plutonium from marine sediments prior to sector-field inductively coupled plasma mass spectrometry (SF-ICP-MS) analysis has been optimized. The analytical method developed yields a pre-concentrated solution of plutonium from which (238)U and (241)Am have been removed, and which is suitable for the direct and simultaneous measurement of (239)Pu, (240)Pu, (241)Pu and (242)Pu by SF-ICP-MS.

Photoactivation and toxicity of mixtures of polycyclic aromatic hydrocarbon compounds in marine sediment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Swartz, R.C.; Ferraro, S.P.; Lamberson, J.O.

1997-10-01

The direct toxicity and photoinduced toxicity of sediment-associated acenaphthene, phenanthrene, fluoranthene, and pyrene were determined for the marine amphipod Rhepoxynius abronius. The four polycyclic aromatic hydrocarbons (PAHs) were spiked into sediment in a concentration series of either single compounds or as approximately equitoxic mixtures of all four compounds. Standard 10-d sediment toxicity tests were conducted under fluorescent lighting. After 10 d, survivors were exposed for 1 h to ultraviolet (UV) radiation in the absence of sediment and then tested for their ability to bury in uncontaminated sediment. The 10-d median lethal concentrations (LC50s) were 2.31 mg acenaphthene/g organic carbon (OC),more » 2.22 mg phenanthrene/g OC, 3.31 mg fluoranthene/g OC, and 2.81 mg pyrene/g OC. These LC50s were used to calculate the sum of toxic units ({Sigma}TU) of the four PAHs in the approximately equitoxic mixtures. The {Sigma}TU LC50 was then calculated for the mixture treatments. If the toxicologic interaction of a mixture of contaminants is additive, {Sigma}TU LC50 = 1.0. The observed LC50 (1.55 {Sigma}TU) was slightly, but significantly, greater than unity, indicating that the interaction of PAHs in the mixture was less than additive. Exposure to UV radiation enhanced the toxic effects of fluoranthene and pyrene, but did not affect the toxicity of acenaphthene and phenanthrene. Effects of UV radiation on the toxicity of the mixture of four PAHs could be explained by the photoactivation of fluoranthene and pyrene alone. These results are consistent with predictions based on photophysical properties of PAH compounds.« less

Volatile fatty acids as substrates for iron and sulfate reduction in Arctic marine sediments, Svalbard

NASA Astrophysics Data System (ADS)

Finke, N.; Vandieken, V.; Jorgensen, B. B.

2006-12-01

Anaerobic degradation of complex organic material in aquatic systems is a multi-step process. The metabolic products of fermentative bacteria serve as electron donors for the terminal oxidizing bacteria. In marine sediments, iron reduction and sulfate reduction are generally the most important terminal oxidation processes in the upper anoxic zone [1]. Microorganisms that reduce iron and sulfate may use a broad range of electron donors, yet the list of potential substrates provides little information about the substrates used in situ by these organisms. Investigations on the electron donors for sulfate reducers in marine sediments have shown that volatile fatty acids (VFA), and in particular acetate, together with hydrogen are the major substrates (e.g. [2-4]). Similar investigations for iron reduction or simultaneous iron and sulfate reduction are lacking for marine sediments. Furthermore, most of these studies were made in temperate sediments and little is known about the substrates for sulfate reducers in permanently cold sediments, which account for >90% of the ocean floor [5]. We investigated the relative contributions of iron reduction and sulfate reduction to the terminal oxidation of organic carbon and the importance of acetate, lactate, propionate, and isobutyrate as electron donors for iron and sulfate reduction in permanently cold, Arctic sediments from Svalbard. In the surface layer (0-2 cm) sulfate reduction accounted for 2/3 of the organic carbon oxidation (determined as DIC production), the remaining 1/3 were attributed to iron reduction. In the 5-9 cm layer sulfate reduction was the sole important terminal oxidation step. The contribution of acetate to terminal oxidation was determined by radiotracer incubation as well as from the accumulation after the inhibition of sulfate reduction by selenate. The rates determined with the two methods varied by less than 20%. Acetate turnover, determined with the tracer incubations, accounted for 10 and 40% of

Presence of Nitrate-Accumulating Sulfur Bacteria and Their Influence on Nitrogen Cycling in a Shallow Coastal Marine Sediment

PubMed Central

Sayama, Mikio

2001-01-01

Nitrate flux between sediment and water, nitrate concentration profile at the sediment-water interface, and in situ sediment denitrification activity were measured seasonally at the innermost part of Tokyo Bay, Japan. For the determination of sediment nitrate concentration, undisturbed sediment cores were sectioned into 5-mm depth intervals and each segment was stored frozen at −30°C. The nitrate concentration was determined for the supernatants after centrifuging the frozen and thawed sediments. Nitrate in the uppermost sediment showed a remarkable seasonal change, and its seasonal maximum of up to 400 μM was found in October. The directions of the diffusive nitrate fluxes predicted from the interfacial concentration gradients were out of the sediment throughout the year. In contrast, the directions of the total nitrate fluxes measured by the whole-core incubation were into the sediment at all seasons. This contradiction between directions indicates that a large part of the nitrate pool extracted from the frozen surface sediments is not a pore water constituent, and preliminary examinations demonstrated that the nitrate was contained in the intracellular vacuoles of filamentous sulfur bacteria dwelling on or in the surface sediment. Based on the comparison between in situ sediment denitrification activity and total nitrate flux, it is suggested that intracellular nitrate cannot be directly utilized by sediment denitrification, and the probable fate of the intracellular nitrate is hypothesized to be dissimilatory reduction to ammonium. The presence of nitrate-accumulating sulfur bacteria therefore may lower nature's self-purification capacity (denitrification) and exacerbate eutrophication in shallow coastal marine environments. PMID:11472923

Microbes of deep marine sediments as viewed by metagenomics

NASA Astrophysics Data System (ADS)

Biddle, J.

2015-12-01

Ten years after the first deep marine sediment metagenome was produced, questions still exist about the nucleic acid sequences we have retrieved. Current data sets, including the Peru Margin, Costa Rica Margin and Iberian Margin show that consistently, data forms larger assemblies at depth due to the reduced complexity of the microbial community. But are these organisms active or preserved? At SMTZs, a change in the assembly statistics is noted, as well as an increase in cell counts, suggesting that cells are truly active. As depth increases, genome sizes are consistently large, suggesting that much like soil microbes, sedimentary microbes may maintain a larger reportorie of genomic potential. Functional changes are seen with depth, but at many sites are not correlated to specific geochemistries. Individual genomes show changes with depth, which raises interesting questions on how the subsurface is settled and maintained. The subsurface does have a distinct genomic signature, including unusual microbial groups, which we are now able to analyze for total genomic content.

Assessing the potential of amino acid δ13C patterns as a carbon source tracer in marine sediments: effects of algal growth conditions and sedimentary diagenesis

NASA Astrophysics Data System (ADS)

Larsen, T.; Bach, L. T.; Salvatteci, R.; Wang, Y. V.; Andersen, N.; Ventura, M.; McCarthy, M. D.

2015-01-01

Burial of organic carbon in marine sediments has a profound influence in marine biogeochemical cycles, and provides a sink for greenhouse gases such as CO2 and CH4. However, tracing organic carbon from primary production sources as well as its transformations in the sediment record remains challenging. Here we examine a novel but growing tool for tracing biosynthetic origin of amino acid carbon skeletons, based on natural occurring stable carbon isotope patterns in individual amino acids (δ13CAA). We focus on two important aspects for δ13CAA utility in sedimentary paleoarchives: first, the fidelity of source diagnostic of algal δ13CAA patterns across different oceanographic growth conditions; and second, the ability of δ13CAA patterns to record the degree of subsequent microbial amino acid synthesis after sedimentary burial. Using the marine diatom Thalassiosira weissflogii, we tested under controlled conditions how δ13CAA patterns respond to changing environmental conditions, including light, salinity, temperature, and pH. Our findings show that while differing oceanic growth conditions can change macromolecular cellular composition, δ13CAA isotopic patterns remain largely invariant. These results underscore that δ13CAA patterns should accurately record biosynthetic sources across widely disparate oceanographic conditions. We also explored how δ13CAA patterns change as a function of age, total nitrogen and organic carbon content after burial, in a marine sediment core from a coastal upwelling area off Peru. Based on the four most informative amino acids for distinguishing between diatom and bacterial sources (i.e. isoleucine, lysine, leucine and tyrosine), bacterial derived amino acids ranged from 10-15% in the sediment layers from the last 5000 years to 35% during the last glacial period. The larger bacterial fractions in older sediments indicate that bacterial activity and amino acid resynthesis progressed, approximately as a function of sediment age, to

Cable Bacteria and the Bioelectrochemical Snorkel: The Natural and Engineered Facets Playing a Role in Hydrocarbons Degradation in Marine Sediments

PubMed Central

Matturro, Bruna; Cruz Viggi, Carolina; Aulenta, Federico; Rossetti, Simona

2017-01-01

The composition and metabolic traits of the microbial communities acting in an innovative bioelectrochemical system were here investigated. The system, known as Oil Spill Snorkel, was recently developed to stimulate the oxidative biodegradation of petroleum hydrocarbons in anoxic marine sediments. Next Generation Sequencing was used to describe the microbiome of the bulk sediment and of the biofilm growing attached to the surface of the electrode. The analysis revealed that sulfur cycling primarily drives the microbial metabolic activities occurring in the bioelectrochemical system. In the anoxic zone of the contaminated marine sediment, petroleum hydrocarbon degradation occurred under sulfate-reducing conditions and was lead by different families of Desulfobacterales (46% of total OTUs). Remarkably, the occurrence of filamentous Desulfubulbaceae, known to be capable to vehicle electrons deriving from sulfide oxidation to oxygen serving as a spatially distant electron acceptor, was demonstrated. Differently from the sediment, which was mostly colonized by Deltaproteobacteria, the biofilm at the anode hosted, at high extent, members of Alphaproteobacteria (59%) mostly affiliated to Rhodospirillaceae family (33%) and including several known sulfur- and sulfide-oxidizing genera. Overall, we showed the occurrence in the system of a variety of electroactive microorganisms able to sustain the contaminant biodegradation alone or by means of an external conductive support through the establishment of a bioelectrochemical connection between two spatially separated redox zones and the preservation of an efficient sulfur cycling. PMID:28611751

Methane production in the sulfate-depleted sediments of two marine basins

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kuivila, K.M.; Murray, J.W.; Devol, A.H.

1990-02-01

Rates of methane production via both acetate fermentation and CO{sub 2} reduction were directly measured with radiotracer techniques in the sulfate-depleted sediments of Saanich and Princess Louisa Inlets. Comparison of measured and modeled rates suggests that these two pathways account for the majority of methane produced below the sulfate reduction zone in the sediments of both basins. Methane production via CO{sub 2} reduction was slightly more important than acetate fermentation with 57-58% of the methane in Saanich Inlet and 52-57% in Princess Louisa Inlet being produced from bicarbonate. The results from Saanich Inlet, a seasonally anoxic basin, are compared withmore » Princess Louisa Inlet, with a permanently oxic hypolimnion. Although the two basins have comparable organic-carbon rain rates, the rates of methanogenesis are much lower in Princess Louisa Inlet. This decrease in methane production can be attributed to the consumption of organic carbon via aerobic respiration occurring in the surface sediments of Princess Louisa Inlet, thereby decreasing the actual input of organic carbon to the zone of methane production. The relative importance of CO{sub 2} reduction and acetate fermentation in the production of methane was the same in both basins, suggesting that prior aerobic degradation of the organic matter has little influence on the pathways of methane production. The results from this study in the two marine systems (high sulfate) are also compared to published studies in freshwater environments (low sulfate) where acetate fermentation is the predominant pathway of methane production.« less

Decomposition of algal lipids in clay-enriched marine sediment under oxic and anoxic conditions

NASA Astrophysics Data System (ADS)

Lü, Dongwei; Song, Qian; Wang, Xuchen

2010-01-01

A series of laboratory incubation experiments were conducted to examine the decomposition of algal organic matter in clay-enriched marine sediment under oxic and anoxic conditions. During the 245-day incubation period, changes in the concentrations of TOC, major algal fatty acid components (14:0, 16:0, 16:1, 18:1 and 20:5), and n-alkanes (C16-C23) were quantified in the samples. Our results indicate that the organic matters were degraded more rapidly in oxic than anoxic conditions. Adsorption of fatty acids onto clay minerals was a rapid and reversible process. Using a simple G model, we calculated the decomposition rate constants for TOC, n-alkanes and fatty acids which ranged from 0.017-0.024 d-1, 0.049-0.103 d-1 and 0.011 to 0.069 d-1, respectively. Algal organic matter degraded in two stages characterized by a fast and a slow degradation processes. The addition of clay minerals montmorillonite and kaolinite to the sediments showed significant influence affecting the decomposition processes of algal TOC and fatty acids by adsorption and incorporation of the compounds with clay particles. Adsorption/association of fatty acids by clay minerals was rapid but appeared to be a slow reversible process. In addition to the sediment redox and clay influence, the structure of the compounds also played important roles in affecting their degradation dynamic in sediments.

Culture-dependent and independent studies of microbial diversity in highly copper-contaminated Chilean marine sediments.

PubMed

Besaury, Ludovic; Marty, Florence; Buquet, Sylvaine; Mesnage, Valérie; Muyzer, Gerard; Quillet, Laurent

2013-02-01

Cultivation and molecular-based approaches were used to study microbial diversity in two Chilean marine sediments contaminated with high (835 ppm) and very high concentrations of copper (1,533 ppm). The diversity of cultivable bacteria resistant to copper was studied at oxic and anoxic conditions, focusing on sulfate-, thiosulfate-, and iron-reducing bacteria. For both sediments, the cultivable bacteria isolated at oxic conditions were mostly affiliated to the genus Bacillus, while at anoxic conditions the majority of the cultivable bacteria found were closely related to members of the genera Desulfovibrio, Sphingomonas, and Virgibacillus. Copper resistance was between 100 and 400 ppm, with the exception of a strain affiliated to members of the genus Desulfuromonas, which was resistant up to 1,000 ppm of copper. In parallel, cloning and sequencing of 16S rRNA was performed to study the total bacterial diversity in the sediments. A weak correlation was observed between the isolated strains and the 16S rRNA operational taxonomic units detected. The presence of copper resistance genes (copA, cusA, and pcoA) was tested for all the strains isolated; only copA was detected in a few isolates, suggesting that other copper resistance mechanisms could be used by the bacteria in those highly copper-contaminated sediments.

A First Look at Oxygen and Silicon Isotope Variations in Diatom Silica from a Pliocene Antarctic Marine Sediment Core

NASA Astrophysics Data System (ADS)

Abbott, T.; Dodd, J. P.; Hackett, H.; Scherer, R. P.

2016-02-01

Coupled oxygen (δ18O) and silicon (δ30Si) isotope variations in diatom silica (opal-A) are increasingly used as a proxy to reconstruct paleoenvironmental conditions (water temperatures, water mass mixing, nutrient cycling) in marine environments. Diatom silica is a particularly significant paleoenvironmental proxy in high latitude environments, such as the Southern Ocean, where diatom blooms are abundant and diatom frustules are well preserved in the sediment. The Andrill-1B (AND-1B) sediment core from the Ross Sea (Antarctica) preserves several Pliocene ( 4.5 Ma) age diatomite units. Here we present preliminary δ18O and δ30Si values for a diatomite subunit in the AND-1B sediment core. Initial isotope values for the AND-1B diatoms silica record relatively high variability (range δ18O: 36.3‰ to 39.9‰) that could be interpreted as large-scale changes in the water temperature and/or freshwater mixing in the Ross Sea; however, a significant concern with marine sediment of this age is isotope fractionation during diagenesis and the potential formation of opal-CT lepispheres. The effects of clay contamination on the diatom silica δ18O values have been addressed through sample purification and quantified through chemical and physical analyses of the diatom silica. The isotopic effects of opal-CT are not as clearly understood and more difficult to physically separate from the primary diatom silica. In order to better understand the isotope variations in the AND-1B diatoms, we also evaluated silicon and oxygen isotope fractionation during the transition from opal-A to opal-CT in a controlled laboratory experiment. Opal-A from cultured marine diatoms (Thalassiosira weissflogii) was subjected to elevated temperatures (150°C) in acid digestion vessels for 4 weeks to initiate opal-CT precipitation. Quantifying the effects of opal-CT formation on δ18O and δ30Si variations in biogenic silica improves our understanding of the use of diatom silica isotope values a

Algoriphagus resistens sp. nov., isolated from marine sediment.

PubMed

Han, Ji-Ru; Zhao, Jin-Xin; Wang, Zong-Jie; Chen, Guan-Jun; Du, Zong-Jun

2017-05-01

Strain NH1T, a pink-pigmented, facultatively anaerobic, heterotrophic, catalase-positive and oxidase-negative, Gram-stain-negative marine bacterium, was isolated from marine sediment on the coast of Weihai, China. Cells of strain NH1T were rod-shaped, 0.8-2.0 µm in length and 0.5-1.0 µm in width. The strain was able to grow at 13-37 °C, pH 5.5-8.5, in the presence of 0.0-8.0 % (w/v) NaCl. Optimal growth was observed at 28 °C, with 3.0 % (w/v) NaCl and pH 6.5-7.0. Nitrate was reduced. The G+C content of the DNA was 41.9 mol%. The major isoprenoid quinone was MK-7 and the main cellular fatty acids (>10 %) were summed feature 3 (33.6 %) comprising iso-C15 : 0 2-OH and/or C16 : 1ω7c, and iso-C15:0 (19.2%). The major polar lipids in strain NH1T were phosphatidylethanolamine, unidentified lipids, phospholipid and aminolipids. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain NH1T was highly related to the type strains of Algoriphagus antarcticus (97.87 % 16SrRNA gene sequence similarity) and Algoriphagus ratkowskyi (97.56 %). On basis of the phenotypic and phylogenetic data, strain NH1T should be classified as representing a novel species of the genus Algoriphagus, for which the name Algoriphagus resistens sp. nov. is proposed. The type strain is NH1T (=MCCC 1H00140T=KCTC 52228T).

Tracking riverborne sediment and contaminants in Commencement Bay, Washington, using geochemical signatures

USGS Publications Warehouse

Takesue, Renee K.; Conn, Kathleen E.; Dinicola, Richard S.

2017-09-29

Large rivers carry terrestrial sediment, contaminants, and other materials to the coastal zone where they can affect marine biogeochemical cycles and ecosystems. This U.S. Geological Survey study combined river and marine sediment geochemistry and organic contaminant analyses to identify riverborne sediment and associated contaminants at shoreline sites in Commencement Bay, Puget Sound, Washington, that could be used by adult forage fish and other marine organisms. Geochemical signatures distinguished the fine fraction (<0.063 millimeter, mm) of Puyallup River sediment—which originates from Mount Rainier, a Cascade volcano—from glacial fine sediment in lowland bluffs that supply sediment to beaches. In combination with activities of beryllium-7 (7Be), a short-lived radionuclide, geochemical signatures showed that winter 2013–14 sediment runoff from the Puyallup River was transported to and deposited along the north shore of Commencement Bay, then mixed downward into the sediment column. The three Commencement Bay sites at which organic contaminants were measured in surface sediment did not have measurable 7Be activities in that layer, so their contaminant assemblages were attributed to sources from previous years. Concentrations of organic contaminants (the most common of which were polycyclic aromatic hydrocarbons, polychlorinated biphenyls, and fecal sterols) were higher in the <0.063-mm fraction compared to the <2-mm fraction, in winter compared to summer, in river suspended sediment compared to river bar and bank sediment, and in marine sediment compared to river sediment. The geochemical property barium/aluminum (Ba/Al) showed that the median percentage of Puyallup River derived fine surface sediment along the shoreline of Commencement Bay was 77 percent. This finding, in combination with higher concentrations of organic contaminants in marine rather than river sediment, indicates that riverborne sediment-bound contaminants are retained in shallow

Historical trace element accumulation in marine sediments from the Tamaulipas shelf, Gulf of Mexico: An assessment of natural vs anthropogenic inputs.

PubMed

Celis-Hernandez, Omar; Rosales-Hoz, Leticia; Cundy, Andrew B; Carranza-Edwards, Arturo; Croudace, Ian W; Hernandez-Hernandez, Hector

2018-05-01

The Gulf of Mexico is considered one of the world's major marine ecosystems, supporting important fisheries and habitats such as barrier islands, mangrove forests, seagrass beds, coral reefs etc. It also hosts a range of complex offshore petroleum exploration, extraction, and refining industries, which may have chronic or acute impacts on ecosystem functioning. Previous work on the marine effects of this activity is geographically incomplete, and has tended to focus on direct hydrocarbon impacts, while impacts from other related contaminants (e.g. heavy metals, salt-rich drilling muds) which may be discharged from oil facilities have not been widely assessed. Here, we examine historical trace element accumulation in marine sediments collected from four sites in the Tamaulipas shelf, Gulf of Mexico, in the area of the Arenque oil field. Dated sediment cores were used to examine the sources, and historical and contemporary inputs, of trace metals (including those typically present in oil industry discharges) and their potential biological impact in the Tamaulipas aquatic environment over the last 100years. CaO (i.e. biogenic component) normalized data showed increasing V, Cr, Zn, Cu, Pb, Zr and Ba towards the sediment surface in three of the four cores, with Ba and V (based on an adverse effect index) possibly associated with adverse effects on organisms. Dated Ba/CaO profiles show an increase of 30-137% after opening of oil installations in the study area, and can be broadly correlated with increasing oil industry activities across the wider Gulf of Mexico. Data do not record however a clear enhancement of Ba concentration in sediment cores collected near to oil platforms over more distal cores, indicating that any Ba released from drilling platforms is incorporated quickly into the sediments around the drilling sites, and once this element has been deposited its rate of resuspension and mobility is low. Sediment core data from the Tamaulipas shelf show the

Microbial and viral-like rhodopsins present in coastal marine sediments from four polar and subpolar regions

DOE Office of Scientific and Technical Information (OSTI.GOV)

López, José L.; Golemba, Marcelo; Hernández, Edgardo

Rhodopsins are broadly distributed. In this work, we analyzed 23 metagenomes corresponding to marine sediment samples from four regions that share cold climate conditions (Norway; Sweden; Argentina and Antarctica). In order to investigate the genes evolution of viral rhodopsins, an initial set of 6224 bacterial rhodopsin sequences according to COG5524 were retrieved from the 23 metagenomes. After selection by the presence of transmembrane domains and alignment, 123 viral (51) and non-viral (72) sequences (>50 amino acids) were finally included in further analysis. Viral rhodopsin genes were homologs of Phaeocystis globosa virus and Organic lake Phycodnavirus. Non-viral microbial rhodopsin genes weremore » ascribed to Bacteroidetes, Planctomycetes, Firmicutes, Actinobacteria, Cyanobacteria, Proteobacteria, Deinococcus-Thermus and Cryptophyta and Fungi. A rescreening using Blastp, using as queries the viral sequences previously described, retrieved 30 sequences (>100 amino acids). Phylogeographic analysis revealed a geographical clustering of the sequences affiliated to the viral group. This clustering was not observed for the microbial non-viral sequences. The phylogenetic reconstruction allowed us to propose the existence of a putative ancestor of viral rhodopsin genes related to Actinobacteria and Chloroflexi. This is the first report about the existence of a phylogeographic association of the viral rhodopsin sequences from marine sediments.« less

Optimization of microwave-assisted extraction of hydrocarbons in marine sediments: comparison with the Soxhlet extraction method.

PubMed

Vázquez Blanco, E; López Mahía, P; Muniategui Lorenzo, S; Prada Rodríguez, D; Fernández Fernández, E

2000-02-01

Microwave energy was applied to extract polycyclic aromatic hydrocarbons (PAHs) and linear aliphatic hydrocarbons (LAHs) from marine sediments. The influence of experimental conditions, such as different extracting solvents and mixtures, microwave power, irradiation time and number of samples extracted per run has been tested using real marine sediment samples; volume of the solvent, sample quantity and matrix effects were also evaluated. The yield of extracted compounds obtained by microwave irradiation was compared with that obtained using the traditional Soxhlet extraction. The best results were achieved with a mixture of acetone and hexane (1:1), and recoveries ranged from 92 to 106%. The extraction time is dependent on the irradiation power and the number of samples extracted per run, so when the irradiation power was set to 500 W, the extraction times varied from 6 min for 1 sample to 18 min for 8 samples. Analytical determinations were carried out by high-performance liquid chromatography (HPLC) with an ultraviolet-visible photodiode-array detector for PAHs and gas chromatography (GC) using a FID detector for LAHs. To test the accuracy of the microwave-assisted extraction (MAE) technique, optimized methodology was applied to the analysis of standard reference material (SRM 1941), obtaining acceptable results.

Fungal diversity from deep marine subsurface sediments (IODP 317, Canterbury Basin, New Zealand)

NASA Astrophysics Data System (ADS)

Redou, V.; Arzur, D.; Burgaud, G.; Barbier, G.

2012-12-01

Recent years have seen a growing interest regarding micro-eukaryotic communities in extreme environments as a third microbial domain after Bacteria and Archaea. However, knowledge is still scarce and the diversity of micro-eukaryotes in such environments remains hidden and their ecological role unknown. Our research program is based on the deep sedimentary layers of the Canterbury Basin in New Zealand (IODP 317) from the subsurface to the record depth of 1884 meters below seafloor. The objectives of our study are (i) to assess the genetic diversity of fungi in deep-sea sediments and (ii) identify the functional part in order to better understand the origin and the ecological role of fungal communities in this extreme ecosystem. Fingerprinting-based methods using capillary electrophoresis single-strand conformation polymorphism and denaturing high-performance liquid chromatography were used as a first step to raise our objectives. Molecular fungal diversity was assessed using amplification of ITS1 (Internal Transcribed Spacer 1) as a biomarker on 11 samples sediments from 3.76 to 1884 meters below seafloor. Fungal molecular signatures were detected throughout the sediment core. The phyla Ascomycota and Basidiomycota were revealed with DNA as well as cDNA. Most of the phylotypes are affiliated to environmental sequences and some to common fungal cultured species. The discovery of a present and metabolically active fungal component in this unique ecosystem allows some interesting first hypotheses that will be further combined to culture-based methods and deeper molecular methods (454 pyrosequencing) to highlight essential informations regarding physiology and ecological role of fungal communities in deep marine sediments.

Bioturbation and the role of microniches for sulfate reduction in coastal marine sediments.

PubMed

Bertics, Victoria J; Ziebis, Wiebke

2010-11-01

The effects of bioturbation in marine sediments are mainly associated with an increase in oxic and oxidized zones through an influx of oxygen-rich water deeper into the sediment and the rapid transport of particles between oxic and anoxic conditions. However, macrofaunal activity also can increase the occurrence of reduced microniches and anaerobic processes, such as sulfate reduction. Our goal was to determine the two-dimensional distribution of microniches associated with burrows of a ghost shrimp (Neotrypaea californiensis) and to determine microbial activities. In laboratory experiments, detailed measurements of sulfate reduction rates (SRR) were measured by injecting, in a 1 cm grid, radiolabelled sulfate directly into a narrow aquarium (40 cm × 30 cm × 3 cm) containing the complex burrow of an actively burrowing shrimp. Light-coloured oxidized burrow walls, along with black reduced microniches, were clearly visible through the aquarium walls. Direct injection of radiotracers allowed for whole-aquarium incubation to obtain two-dimensional documentation of sulfate reduction. Results indicated SRR were up to three orders of magnitude higher (140-790 nmol SO(4) (2-) cm(-3) day(-1) ) in reduced microniches associated with burrows when compared with the surrounding sediment. Additionally, some of the subsurface sulfate-reducing microniches associated with the burrow system appeared to be zones of dinitrogen fixation. Bioturbation may also lead to decreased sulfate reduction in other microniches and the sum of the activity in all microniches might not result in a total increase of sulfate reduction compared with non-bioturbated control sediments. © 2010 Society for Applied Microbiology and Blackwell Publishing Ltd.

Shallow water marine sediment bacterial community shifts along a natural CO2 gradient in the Mediterranean Sea off Vulcano, Italy.

PubMed

Kerfahi, Dorsaf; Hall-Spencer, Jason M; Tripathi, Binu M; Milazzo, Marco; Lee, Junghoon; Adams, Jonathan M

2014-05-01

The effects of increasing atmospheric CO(2) on ocean ecosystems are a major environmental concern, as rapid shoaling of the carbonate saturation horizon is exposing vast areas of marine sediments to corrosive waters worldwide. Natural CO(2) gradients off Vulcano, Italy, have revealed profound ecosystem changes along rocky shore habitats as carbonate saturation levels decrease, but no investigations have yet been made of the sedimentary habitat. Here, we sampled the upper 2 cm of volcanic sand in three zones, ambient (median pCO(2) 419 μatm, minimum Ω(arag) 3.77), moderately CO(2)-enriched (median pCO(2) 592 μatm, minimum Ω(arag) 2.96), and highly CO(2)-enriched (median pCO(2) 1611 μatm, minimum Ω(arag) 0.35). We tested the hypothesis that increasing levels of seawater pCO(2) would cause significant shifts in sediment bacterial community composition, as shown recently in epilithic biofilms at the study site. In this study, 454 pyrosequencing of the V1 to V3 region of the 16S rRNA gene revealed a shift in community composition with increasing pCO(2). The relative abundances of most of the dominant genera were unaffected by the pCO(2) gradient, although there were significant differences for some 5 % of the genera present (viz. Georgenia, Lutibacter, Photobacterium, Acinetobacter, and Paenibacillus), and Shannon Diversity was greatest in sediments subject to long-term acidification (>100 years). Overall, this supports the view that globally increased ocean pCO(2) will be associated with changes in sediment bacterial community composition but that most of these organisms are resilient. However, further work is required to assess whether these results apply to other types of coastal sediments and whether the changes in relative abundance of bacterial taxa that we observed can significantly alter the biogeochemical functions of marine sediments.

Community and functional shifts in ammonia oxidizers across terrestrial and marine (soil/sediment) boundaries in two coastal Bay ecosystems.

PubMed

Zhang, Li-Mei; Duff, Aoife M; Smith, Cindy J

2018-04-24

Terrestrial-marine boundaries are significant sites of biogeochemical activity with delineated gradients from land to sea. While niche differentiation of ammonia-oxidizing archaea (AOA) and bacteria (AOB) driven by pH and nitrogen is well known, the patterns and environmental drivers of AOA and AOB community structure and activity across soil-sediment boundaries have not yet been determined. In this study, nitrification potential rate, community composition and transcriptional activity of AOA and AOB in soil, soil/sediment interface and sediments of two coastal Bays were characterized using a combination of field investigations and microcosm incubations. At DNA level, amoA gene abundances of AOA were significantly greater than AOB in soil, while in sediments AOB were significantly more abundant than AOA, but at the soil/sediment interface there were equal numbers of AOA and AOB amoA genes. Microcosm incubations provided further evidence, through qPCR and DGGE-sequencing analysis of amoA transcripts, that AOA were active in soil, AOB in sediment and both AOA and AOB were active at the soil/sediment interface. The AOA and AOB community composition shifted across the coastal soil-interface-sediment gradient with salinity and pH identified as major environmental drivers. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.

Marine Subsurface Microbial Communities Across a Hydrothermal Gradient in Okinawa Trough Sediments

NASA Astrophysics Data System (ADS)

Brandt, L. D.; Hser Wah Saw, J.; Ettema, T.; House, C. H.

2015-12-01

IODP Expedition 331 to the Okinawa backarc basin provided an opportunity to study the microbial stratigraphy within the sediments surrounding a hydrothermal vent. The Okinawa backarc basin is a sedimented region of the seafloor located on a continental margin, and also hosts a hydrothermal network within the subsurface. Site C0014 within the Iheya North hydrothermal field is located 450 m east of the active vent and has a surface temperature of 5°C with no evidence of hydrothermal alteration within the top 10 meters below sea floor (mbsf). Temperature increases with depth at an estimated rate of 3°C/m and transitions from non-hydrothermal margin sediments to a hydrothermally altered regime below 10 mbsf. In this study, we utilized deep 16S rRNA sequencing of DNA from IODP Expedition 331 Site C0014 sediment horizons in order to assess diversity throughout the sediment column as well as determine the potential limits of the biosphere. Analysis of the amplicon data shows a shift over 15 mbsf from a heterogeneous community of cosmopolitan marine subsurface taxa toward an archaeal-dominated community in the deepest horizons of the predicted biosphere. Notably, the phylum Chloroflexi represents a substantial taxon through most horizons, where it appears to be replaced below 10 mbsf by punctuations of thermophilic and methanotrophic Archaea and Miscellaneous Crenarchaeotic Group abundances. DNA from the aforementioned transition horizons was further analyzed using metagenomic sequencing. Preliminary taxonomic analysis of the metagenomic data agrees well with amplicon data in capturing the shift in relative abundance of Archaea increasing with depth. Additionally, reverse gyrase, a gene found exclusively in hyperthermophilic microorganisms, was recovered only in the metagenome of the deepest horizon. A BLAST search of this protein sequence against the GenBank non-redudnant protein database produced top hits with reverse gyrase from Thermococcus and Pyrococcus, which are

Sediment Resuspension by Ship Traffic in Newark Bay, New Jersey

DTIC Science & Technology

2015-04-01

increased turbidity and sediment deposition on corals (Bermuda). Bulletin of Marine Science 87(3):659- 679. Kelderman, P., D. B . Kassie, M . Bijlsma, L. C...in the coastal marine environment. Marine Ecology Progress Series 315:13-18. Maa, J. P.-Y., and B . Chadwick . 2007. Estimation of annual average... B . Ward, B . Boyd, W. Murphy.R. Nolen-Hoeksema, M . Art, and D. A. Rosales. 2011a. Sediment, sedimentation, and environments of the lower Hackensack

Secondary metabolites from Penicillium pinophilum SD-272, a marine sediment-derived fungus.

PubMed

Wang, Ming-Hui; Li, Xiao-Ming; Li, Chun-Shun; Ji, Nai-Yun; Wang, Bin-Gui

2013-06-21

Two new secondary metabolites, namely, pinodiketopiperazine A (1) and 6,7-dihydroxy-3-methoxy-3-methylphthalide (2), along with alternariol 2,4-dimethyl ether (3) and L-5-oxoproline methyl ester (4), which were isolated from a natural source for the first time but have been previously synthesized, were characterized from the marine sediment-derived fungus Penicillium pinophilum SD-272. In addition, six known metabolites (5-10) were also identified. Their structures were elucidated by analysis of the NMR and mass spectroscopic data. The absolute configuration of compound 1 was determined by experimental and calculated ECD spectra. Compound 2 displayed potent brine shrimp (Artemia salina) lethality with LD₅₀ 11.2 μM.

Distribution of naturally occurring radioactivity and ¹³⁷Cs in the marine sediment of Farasan Island, southern Red Sea, Saudi Arabia.

PubMed

Al-Zahrany, A A; Farouk, M A; Al-Yousef, A A

2012-11-01

The present work is a part of a project dedicated to measure the marine radioactivity near the Saudi Arabian coasts of the Red Sea and Arabian Gulf for establishing a marine radioactivity database, which includes necessary information on the background levels of both naturally occurring and man-made radionuclides in the marine environment. Farasan Islands is a group of 84 islands (archipelago), under the administration of the Kingdom of Saudi Arabia, in the Red Sea with its main island of Farasan, which is 50 km off the coast of Jazan City. The levels of natural radioactivity of (238)U, (235)U, (226)Ra, (232)Th and (40)K and man-made radionuclides such as (137)Cs in the grab sediment and water samples around Farasan Island have been measured using gamma-ray spectroscopy. The average activity concentrations of (238)U, (235)U, (226)Ra, (232)Th, (40)K and (137)Cs in the sediment samples were found to be 35.46, 1.75, 3.31, 0.92, 34.34 and 0.14 Bq kg(-1), respectively.

Estimation of apparent rate coefficients for radionuclides interacting with marine sediments from Novaya Zemlya.

PubMed

Børretzen, P; Salbu, B

2000-10-30

To assess the impact of radionuclides entering the marine environment from dumped nuclear waste, information on the physico-chemical forms of radionuclides and their mobility in seawater-sediment systems is essential. Due to interactions with sediment components, sediments may act as a sink, reducing the mobility of radionuclides in seawater. Due to remobilisation, however, contaminated sediments may also act as a potential source of radionuclides to the water phase. In the present work, time-dependent interactions of low molecular mass (LMM, i.e. species < 10 kDa) radionuclides with sediments from the Stepovogo Fjord, Novaya Zemlya and their influence on the distribution coefficients (Kd values) have been studied in tracer experiments using 109Cd2+ and 60Co2+ as gamma tracers. Sorption of the LMM tracers occurred rapidly and the estimated equilibrium Kd(eq)-values for 109Cd and 60Co were 500 and 20000 ml/g, respectively. Remobilisation of 109Cd and 60Co from contaminated sediment fractions as a function of contact time was studied using sequential extraction procedures. Due to redistribution, the reversibly bound fraction of the gamma tracers decreased with time, while the irreversibly (or slowly reversibly) associated fraction of the gamma tracers increased. Two different three-compartment models, one consecutive and one parallel, were applied to describe the time-dependent interaction of the LMM tracers with operationally defined reversible and irreversible (or slowly reversible) sediment fractions. The interactions between these fractions were described using first order differential equations. By fitting the models to the experimental data, apparent rate constants were obtained using numerical optimisation software. The model optimisations showed that the interactions of LMM 60Co were well described by the consecutive model, while the parallel model was more suitable to describe the interactions of LMM 109Cd with the sediments, when the squared sum of

In-situ Phytoremediation of PAH and PCB Contaminated Marine Sediments with Eelgrass (Zostera marina)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huesemann, Michael H.; Hausmann, Tom S.; Fortman, Timothy J.

In view of the fact that there are presently no cost-effective in-situ treatment technologies for contaminated sediments, a 60 week long phytoremediation feasibility study was conducted in seawater-supplied outdoor ponds to determine whether eelgrass (Zostera marina) is capable of removing polynuclear aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs) from submerged marine sediments. It was determined that all PAHs and PCBs, independent of the number of aromatic rings and degree of chlorination, respectively, were removed to a much larger extent in planted sediments compared to unplanted controls. After 60 weeks of treatment, the concentration of total PAHs decreased by 73% inmore » planted sediments but only 25% in unplanted controls. Similarly, total PCBs declined by 60% in the presence of plants while none were removed in the unplanted sediment. Overall, PAH and PCB biodegradation was greatest in the sediment layer that contained most of the eelgrass roots. Abiotic desorption tests conducted at week 32 confirmed that the phytoremediation process was not controlled by mass-transfer or bioavailability limitations since all PAHs and PCBs desorbed rapidly and to a large extent from the sediment. PAHs were detected in both roots and shoots, with root and shoot bioaccumulation factors for total PAHs amounting to approximately 3 and 1, respectively, after 60 weeks of phytoremediation treatment. Similarly, the root bioccumulation factor for total PCBs was around 4, while no PCBs were detected in the eelgrass leaves at the end of the experiment. The total mass fraction of PAHs and PCBs absorbed and translocated by plant biomass during the 60 week period was insignificant, amounting to less than 0.5% of the total mass of PAHs and PCBs which was initially present in the sediment. Finally, the number of total heterotrophic bacteria and hydrocarbon degraders was slightly but not statistically significantly greater in planted sediments than in unplanted

Is ice-rafted sediment in a North Pole marine record evidence for perennial sea-ice cover?

PubMed

Tremblay, L B; Schmidt, G A; Pfirman, S; Newton, R; DeRepentigny, P

2015-10-13

Ice-rafted sediments of Eurasian and North American origin are found consistently in the upper part (13 Ma BP to present) of the Arctic Coring Expedition (ACEX) ocean core from the Lomonosov Ridge, near the North Pole (≈88° N). Based on modern sea-ice drift trajectories and speeds, this has been taken as evidence of the presence of a perennial sea-ice cover in the Arctic Ocean from the middle Miocene onwards (Krylov et al. 2008 Paleoceanography 23, PA1S06. (doi:10.1029/2007PA001497); Darby 2008 Paleoceanography 23, PA1S07. (doi:10.1029/2007PA001479)). However, other high latitude land and marine records indicate a long-term trend towards cooling broken by periods of extensive warming suggestive of a seasonally ice-free Arctic between the Miocene and the present (Polyak et al. 2010 Quaternary Science Reviews 29, 1757-1778. (doi:10.1016/j.quascirev.2010.02.010)). We use a coupled sea-ice slab-ocean model including sediment transport tracers to map the spatial distribution of ice-rafted deposits in the Arctic Ocean. We use 6 hourly wind forcing and surface heat fluxes for two different climates: one with a perennial sea-ice cover similar to that of the present day and one with seasonally ice-free conditions, similar to that simulated in future projections. Model results confirm that in the present-day climate, sea ice takes more than 1 year to transport sediment from all its peripheral seas to the North Pole. However, in a warmer climate, sea-ice speeds are significantly faster (for the same wind forcing) and can deposit sediments of Laptev, East Siberian and perhaps also Beaufort Sea origin at the North Pole. This is primarily because of the fact that sea-ice interactions are much weaker with a thinner ice cover and there is less resistance to drift. We conclude that the presence of ice-rafted sediment of Eurasian and North American origin at the North Pole does not imply a perennial sea-ice cover in the Arctic Ocean, reconciling the ACEX ocean core data with

Cable Bacteria in Freshwater Sediments

PubMed Central

Kristiansen, Michael; Frederiksen, Rasmus B.; Dittmer, Anders Lindequist; Bjerg, Jesper Tataru; Trojan, Daniela; Schreiber, Lars; Damgaard, Lars Riis; Schramm, Andreas; Nielsen, Lars Peter

2015-01-01

In marine sediments cathodic oxygen reduction at the sediment surface can be coupled to anodic sulfide oxidation in deeper anoxic layers through electrical currents mediated by filamentous, multicellular bacteria of the Desulfobulbaceae family, the so-called cable bacteria. Until now, cable bacteria have only been reported from marine environments. In this study, we demonstrate that cable bacteria also occur in freshwater sediments. In a first step, homogenized sediment collected from the freshwater stream Giber Å, Denmark, was incubated in the laboratory. After 2 weeks, pH signatures and electric fields indicated electron transfer between vertically separated anodic and cathodic half-reactions. Fluorescence in situ hybridization revealed the presence of Desulfobulbaceae filaments. In addition, in situ measurements of oxygen, pH, and electric potential distributions in the waterlogged banks of Giber Å demonstrated the presence of distant electric redox coupling in naturally occurring freshwater sediment. At the same site, filamentous Desulfobulbaceae with cable bacterium morphology were found to be present. Their 16S rRNA gene sequence placed them as a distinct sister group to the known marine cable bacteria, with the genus Desulfobulbus as the closest cultured lineage. The results of the present study indicate that electric currents mediated by cable bacteria could be important for the biogeochemistry in many more environments than anticipated thus far and suggest a common evolutionary origin of the cable phenotype within Desulfobulbaceae with subsequent diversification into a freshwater and a marine lineage. PMID:26116678

Feasibility studies for the treatment and reuse of contaminated marine sediments.

PubMed

Bonomoa, L; Careghini, A; Dastoli, S; De Propris, L; Ferrari, G; Gabellini, M; Saponaro, S

2009-07-01

This paper presents preliminary results of laboratory tests aimed at evaluating the easibility of the remediation of marine sediments, which are polluted by mercury and petroleum hydrocarbons, dredged at the bay of Augusta (SR, Italy). The treatment is composed of two sequential steps: in the first, a cement-based granular material is produced (based on a high performance concrete approach); then, the volatile and the semi-volatile compounds in the granular material are removed by a thermal desorption step. Treated materials could be reused or put into caissons, according to their mechanical properties and environmental compatibility. The experiments were focused on evaluating the effect of the process parameter values on: (i) the evolution of cement hydration reactions, (ii) thermal desorption removal efficiencies, (iii) leaching behaviour of the treated material.

Setting limits for acceptable change in sediment particle size composition following marine aggregate dredging.

PubMed

Cooper, Keith M

2012-08-01

In the UK, Government policy requires marine aggregate extraction companies to leave the seabed in a similar physical condition after the cessation of dredging. This measure is intended to promote recovery, and the return of a similar faunal community to that which existed before dredging. Whilst the policy is sensible, and in line with the principles of sustainable development, the use of the word 'similar' is open to interpretation. There is, therefore, a need to set quantifiable limits for acceptable change in sediment composition. Using a case study site, it is shown how such limits could be defined by the range of sediment particle size composition naturally found in association with the faunal assemblages in the wider region. Whilst the approach offers a number of advantages over the present system, further testing would be required before it could be recommended for use in the regulatory context. Crown Copyright © 2012. Published by Elsevier Ltd. All rights reserved.

Multi-residue analysis of 36 priority and emerging pollutants in marine echinoderms (Holothuria tubulosa) and marine sediments by solid-liquid extraction followed by dispersive solid phase extraction and liquid chromatography-tandem mass spectrometry analysis.

PubMed

Martín, J; Zafra-Gómez, A; Hidalgo, F; Ibáñez-Yuste, A J; Alonso, E; Vilchez, J L

2017-05-01

Marine echinoderms are filter-feeding invertebrates widely distributed along the coasts, and which are therefore extensively exposed to anthropogenic xenobiotics. They can serve as good sentinels for monitoring a large variety of contaminants in marine ecosystems. In this context, a multi-residue analytical method has been validated and applied to Holothuria tubulosa specimens and marine sediments for the determination of 36 organic compounds, which belong to some of the most problematic groups of emerging and priority pollutants (perfluoroalkyl compounds, estrogens, parabens, benzophenones, plasticizers, surfactants, brominated flame retardants and alkylphenols). Lyophilization of samples prior to solvent extraction and clean-up of extracts with C18, followed by liquid chromatography-tandem mass spectrometry analysis, is proposed. A Box-Behnken design was used for optimization of the most influential variables affecting the extraction and clean-up steps. For validation, matrix-matched calibration and recovery assay were applied. Linearity (% r 2 ) higher than 99%, recoveries between 80% and 114% (except in LAS and NP1EO), RSD (precision) lower than 15% and limits of quantification between 0.03 and 12.5ngg -1 dry weight (d.w.) were achieved. The method was applied to nine samples of Holothuria collected along the coast of Granada (Spain), and to marine sediments around the animals. The results demonstrated high bioaccumulation of certain pollutants. A total of 25 out of the 36 studied compounds were quantified, being surfactants, alkylphenols, perfluoroalkyl compounds, triclocarban and parabens the most frequently detected. Nonylphenol was found in the highest concentration (340 and 323ngg -1 d.w. in sediment and Holothuria samples, respectively). Copyright © 2017 Elsevier B.V. All rights reserved.

POST-REMEDIATION BIOMONITORING OF PESTICIDES AND OTHER CONTAMINANTS IN MARINE WATERS AND SEDIMENT NEAR THE UNITED HECKATHORN SUPERFUND SITE, RICHMOND, CALIFORNIA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Antrim, Liam D.; Kohn, Nancy P.

Marine sediment remediation at the United Heckathorn Superfund Site was completed in April 1997. Water and mussel tissues were sampled in February 1999 from four stations near Lauritzen Canal in Richmond, California, for Year 2 of post-remediation monitoring of marine areas near the United Heckathorn Site. Dieldrin and dichlorodiphenyl trichloroethane (DDT) were analyzed in water samples, tissue samples from resident mussels, and tissue samples from transplanted mussels deployed for 4 months. Mussel tissues were also analyzed for polychlorinated biphenyls (PCB), which were detected in sediment samples. Chlorinated pesticide concentrations in water samples were similar to preremediation levels and did notmore » meet remediation goals. Biomonitoring results indicated that the bioavailability of chlorinated pesticides has been reduced from preremediation levels both in the dredged area and throughout Richmond Harbor. Total DDT and dieldrin concentrations in mussel tissues were lower than measured levels from preremediation surveys and also lower than Year 1 levels from post-remediation biomonitoring. Sediment analyses showed the presence of elevated DDT, dieldrin, PCB aroclor 1254, and very high levels of polynuclear aromatic hydrocarbons (PAH) in Lauritzen Channel.« less

Ligand-enhanced electrokinetic remediation of metal-contaminated marine sediments with high acid buffering capacity.

PubMed

Masi, Matteo; Iannelli, Renato; Losito, Gabriella

2016-06-01

The suitability of electrokinetic remediation for removing heavy metals from dredged marine sediments with high acid buffering capacity was investigated. Laboratory-scale electrokinetic remediation experiments were carried out by applying two different voltage gradients to the sediment (0.5 and 0.8 V/cm) while circulating water or two different chelating agents at the electrode compartments. Tap water, 0.1 M citric acid and 0.1 M ethylenediaminetetraacetic acid (EDTA) solutions were used respectively. The investigated metals were Zn, Pb, V, Ni and Cu. In the unenhanced experiment, the acid front could not propagate due to the high acid buffering capacity of the sediments; the production of OH(-) ions at the cathode resulted in a high-pH environment causing the precipitation of CaCO3 and metal hydroxides. The use of citric acid prevented the formation of precipitates, but solubilisation and mobilisation of metal species were not sufficiently achieved. Metal removal was relevant when EDTA was used as the conditioning agent, and the electric potential was raised up to 0.8 V/cm. EDTA led to the formation of negatively charged complexes with metals which migrated towards the anode compartment by electromigration. This result shows that metal removal from sediments with high acid buffering capacity may be achieved by enhancing the electrokinetic process by EDTA addition when the acidification of the medium is not economically and/or environmentally sustainable.

Autigenic and Anthropogenic Uranium in the Marine Sediments of the Gulf of California in Front of Santa Rosalia Mining District

NASA Astrophysics Data System (ADS)

Choumiline, K.; Rodríguez-Figueroa, G.; Shumilin, E.; Sapozhnikov, D.

2007-05-01

To verify the possibilities of U enrichments in the marine sedimentary environment of the eastern sector of the central Gulf of Califoria (GC), eleven sediment cores were collected in front of the Santa Rosalia mining region, peninsula of Baja California. Uranium and some other trace element contents in sliced core layers, dried and homogenized, were determined using instrumental neutron activation analysis. Average total U contents in sediments of five cores collected in the open GC in front of Santa Rosalía at sites with water depths from 265 m to 1030 m and in the Guaymas Basin with 2019 m, ranged from 1.36±0.26 mg kg-1 (Guaymas Basin) to 9.31±3.03 mg kg-1 (SR63 core, depth 630 m). To distinguish non-lithogenic U from the lithogenic one, the normalization of total U contents to the concentrations of Sc in the samples was used. That because this element is a reliable indicator of crustal materials, mainly aluminosilicates in the marine sediments. The relative contribution of non-lithogenic (authigenic) U varied from 49.8±3 % (Guaymas Basin) to 84.2±8.2 % (SR62 core) of the total U content in the sediments of the open central GC. Surprisingly, in three sediment cores from the coastal zone adjacent to the town of Santa Rosalía in water depth range 3-6 m very high concentrations of total U were found, ranging from 54.2±7.3 mg kg-1 (SR4 core) to 110±13 mg kg-1 (SR2 core) and exceeding not only U average abundance in the earth´s crust (2.7 mg kg-1), but also its levels found for SR62 core, as well as those reported for natural enrichments of U in suboxic-anoxic environments, e.g. at Mexico and Peru margin sites (3.04 mg kg-1 - 24.54 mg kg-1, McManus et al., 2006). The relative contribution of non-lithogenic U in the sediments of these three anomalous cores varied from 97.2±0.4 % (SR4 core) to 98.80.2 % (SR1 and SR2 cores) of their total U content. The sediments were also depleted in organic C (0.05 % - 0.18 %), which is not typical for marine solid phases

Injectivity Evaluation for Offshore CO 2 Sequestration in Marine Sediments

DOE PAGES

Dai, Zhenxue; Zhang, Ye; Stauffer, Philip; ...

2017-08-18

Global and regional climate change caused by greenhouse gases emissions has stimulated interest in developing various technologies (such as carbon dioxide (CO 2) geologic sequestration in brine reservoirs) to reduce the concentrations of CO 2 in the atmosphere. Our study develops a statistical framework to identify gravitational CO 2 trapping processes and to quantitatively evaluate both CO 2 injectivity (or storage capacity) and leakage potential from marine sediments which exhibit heterogeneous permeability and variable thicknesses. Here, we focus on sets of geostatistically-based heterogeneous models populated with fluid flow parameters from several reservoir sites in the U.S. Gulf of Mexico (GOM).more » A computationally efficient uncertainty quantification study was conducted with results suggesting that permeability heterogeneity and anisotropy, seawater depth, and sediment thickness can all significantly impact CO 2 flow and trapping. Large permeability/porosity heterogeneity can enhance gravitational, capillary, and dissolution trapping, which acts to deter CO 2 upward migration and subsequent leakage onto the seafloor. When log permeability variance is 5, self-sealing with heterogeneity-enhanced gravitation trapping can be achieved even when water depth is 1.2 km. This extends the previously identified self-sealing condition that water depth be greater than 2.7 km. Our results have yielded valuable insight into the conditions under which safe storage of CO 2 can be achieved in offshore environments. The developed statistical framework is general and can be adapted to study other offshore sites worldwide.« less

Injectivity Evaluation for Offshore CO 2 Sequestration in Marine Sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dai, Zhenxue; Zhang, Ye; Stauffer, Philip

Global and regional climate change caused by greenhouse gases emissions has stimulated interest in developing various technologies (such as carbon dioxide (CO 2) geologic sequestration in brine reservoirs) to reduce the concentrations of CO 2 in the atmosphere. Our study develops a statistical framework to identify gravitational CO 2 trapping processes and to quantitatively evaluate both CO 2 injectivity (or storage capacity) and leakage potential from marine sediments which exhibit heterogeneous permeability and variable thicknesses. Here, we focus on sets of geostatistically-based heterogeneous models populated with fluid flow parameters from several reservoir sites in the U.S. Gulf of Mexico (GOM).more » A computationally efficient uncertainty quantification study was conducted with results suggesting that permeability heterogeneity and anisotropy, seawater depth, and sediment thickness can all significantly impact CO 2 flow and trapping. Large permeability/porosity heterogeneity can enhance gravitational, capillary, and dissolution trapping, which acts to deter CO 2 upward migration and subsequent leakage onto the seafloor. When log permeability variance is 5, self-sealing with heterogeneity-enhanced gravitation trapping can be achieved even when water depth is 1.2 km. This extends the previously identified self-sealing condition that water depth be greater than 2.7 km. Our results have yielded valuable insight into the conditions under which safe storage of CO 2 can be achieved in offshore environments. The developed statistical framework is general and can be adapted to study other offshore sites worldwide.« less

Sensitivity and response of beryllium-10 in marine sediments to rapid production changes (geomagnetic events): A box model study

NASA Astrophysics Data System (ADS)

Christl, Marcus

2007-09-01

The response and the sensitivity of the marine beryllium-10 flux to abrupt production changes (e.g., caused by a geomagnetic event) are investigated by using a simple box model. The effect of mixing processes in the water column on the 10Be flux is simulated, and the influence of bioturbation on the sedimentary record is studied. While the effect of the oceanic residence time is found to be small, bioturbation can drastically change the shape and the amplitude of the modeled 10Be peak. The simulations indicate that 10Be production peaks persisting for more than 1500 years are recorded well in deep-sea sediments if bioturbation-induced integration times are small (tbio ≤ 1000 years), while sediment cores with tbio ≥ 1000 years are found to be not well suited for stratigraphic purposes. The results further show that the sedimentary 10Be peak lags initial signal. This time lag is almost independent of the event duration (for tbio ≤ 1000 years), ranging between about 400 and 600 years. Therefore the model results support the idea that marine 10Be peaks corresponding to geomagnetic events can be used as a global time marker to match marine, terrestrial, and ice core chronologies on the millennial and (if the time lag of (500 ± 100) years is considered) the submillennial timescale.

Interactions between Benthic Copepods, Bacteria and Diatoms Promote Nitrogen Retention in Intertidal Marine Sediments

PubMed Central

Stock, Willem; Heylen, Kim; Sabbe, Koen; Willems, Anne; De Troch, Marleen

2014-01-01

The present study aims at evaluating the impact of diatoms and copepods on microbial processes mediating nitrate removal in fine-grained intertidal sediments. More specifically, we studied the interactions between copepods, diatoms and bacteria in relation to their effects on nitrate reduction and denitrification. Microcosms containing defaunated marine sediments were subjected to different treatments: an excess of nitrate, copepods, diatoms (Navicula sp.), a combination of copepods and diatoms, and spent medium from copepods. The microcosms were incubated for seven and a half days, after which nutrient concentrations and denitrification potential were measured. Ammonium concentrations were highest in the treatments with copepods or their spent medium, whilst denitrification potential was lowest in these treatments, suggesting that copepods enhance dissimilatory nitrate reduction to ammonium over denitrification. We hypothesize that this is an indirect effect, by providing extra carbon for the bacterial community through the copepods' excretion products, thus changing the C/N ratio in favour of dissimilatory nitrate reduction. Diatoms alone had no effect on the nitrogen fluxes, but they did enhance the effect of copepods, possibly by influencing the quantity and quality of the copepods' excretion products. Our results show that small-scale biological interactions between bacteria, copepods and diatoms can have an important impact on denitrification and hence sediment nitrogen fluxes. PMID:25360602

ACOUSTICAL IMAGING AND MECHANICAL PROPERTIES OF SOFT ROCK AND MARINE SEDIMENTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thurman E. Scott, Jr., Ph.D.; Younane Abousleiman, Ph.D.; Musharraf Zaman, Ph.D., P.E.

2001-07-01

Mechanically weak formations, such as chalks, high porosity sandstones, and marine sediments, pose significant problems for oil and gas operators. Problems such as compaction, subsidence, and loss of permeability can affect reservoir production operations. For example, the unexpected subsidence of the Ekofisk chalk in the North Sea required over one billion dollars to re-engineer production facilities to account for losses created during that compaction (Sulak 1991). Another problem in weak formations is that of shallow water flows (SWF). Deep water drilling operations sometimes encounter cases where the marine sediments, at shallow depths just below the seafloor, begin to uncontrollably flowmore » up and around the drill pipe. SWF problems created a loss of $150 million for the Ursa development project in the U.S. Gulf Coast SWF (Furlow 1998a,b; 1999a,b). The goal of this project is to provide a database on both the rock mechanical properties and the geophysical properties of weak rocks and sediments. These could be used by oil and gas companies to detect, evaluate, and alleviate potential production and drilling problems. The results will be useful in, for example, pre-drill detection of events such as SWF's by allowing a correlation of seismic data (such as hazard surveys) to rock mechanical properties. The data sets could also be useful for 4-D monitoring of the compaction and subsidence of an existing reservoir and imaging the zones of damage. During the second quarter of the project the research team has: (1) completed acoustic sensor construction, (2) conducted reconnaissance tests to map the deformational behaviors of the various rocks, (3) developed a sample assembly for the measurement of dynamic elastic and poroelastic parameters during triaxial testing, and (4) conducted a detailed review of the scientific literature and compiled a bibliography of that review. During the first quarter of the project the research team acquired several rock types for

Estimating Population Turnover Rates by Relative Quantification Methods Reveals Microbial Dynamics in Marine Sediment.

PubMed

Kevorkian, Richard; Bird, Jordan T; Shumaker, Alexander; Lloyd, Karen G

2018-01-01

The difficulty involved in quantifying biogeochemically significant microbes in marine sediments limits our ability to assess interspecific interactions, population turnover times, and niches of uncultured taxa. We incubated surface sediments from Cape Lookout Bight, North Carolina, USA, anoxically at 21°C for 122 days. Sulfate decreased until day 68, after which methane increased, with hydrogen concentrations consistent with the predicted values of an electron donor exerting thermodynamic control. We measured turnover times using two relative quantification methods, quantitative PCR (qPCR) and the product of 16S gene read abundance and total cell abundance (FRAxC, which stands for "fraction of read abundance times cells"), to estimate the population turnover rates of uncultured clades. Most 16S rRNA reads were from deeply branching uncultured groups, and ∼98% of 16S rRNA genes did not abruptly shift in relative abundance when sulfate reduction gave way to methanogenesis. Uncultured Methanomicrobiales and Methanosarcinales increased at the onset of methanogenesis with population turnover times estimated from qPCR at 9.7 ± 3.9 and 12.6 ± 4.1 days, respectively. These were consistent with FRAxC turnover times of 9.4 ± 5.8 and 9.2 ± 3.5 days, respectively. Uncultured Syntrophaceae , which are possibly fermentative syntrophs of methanogens, and uncultured Kazan-3A-21 archaea also increased at the onset of methanogenesis, with FRAxC turnover times of 14.7 ± 6.9 and 10.6 ± 3.6 days. Kazan-3A-21 may therefore either perform methanogenesis or form a fermentative syntrophy with methanogens. Three genera of sulfate-reducing bacteria, Desulfovibrio , Desulfobacter , and Desulfobacterium , increased in the first 19 days before declining rapidly during sulfate reduction. We conclude that population turnover times on the order of days can be measured robustly in organic-rich marine sediment, and the transition from sulfate-reducing to methanogenic conditions stimulates

Wave Glider Monitoring of Sediment Transport and Dredge Plumes in a Shallow Marine Sandbank Environment.

PubMed

Van Lancker, Vera; Baeye, Matthias

2015-01-01

As human pressure on the marine environment increases, safeguarding healthy and productive seas increasingly necessitates integrated, time- and cost-effective environmental monitoring. Employment of a Wave Glider proved very useful for the study of sediment transport in a shallow sandbank area in the Belgian part of the North Sea. During 22 days, data on surface and water-column currents and turbidity were recorded along 39 loops around an aggregate-extraction site. Correlation with wave and tidal-amplitude data allowed the quantification of current- and wave-induced advection and resuspension, important background information to assess dredging impacts. Important anomalies in suspended particulate matter concentrations in the water column suggested dredging-induced overflow of sediments in the near field (i.e., dynamic plume), and settling of finer-grained material in the far field (i.e., passive plume). Capturing the latter is a successful outcome to this experiment, since the location of dispersion and settling of a passive plume is highly dependent on the ruling hydro-meteorological conditions and thus difficult to predict. Deposition of the observed sediment plumes may cause habitat changes in the long-term.

Wave Glider Monitoring of Sediment Transport and Dredge Plumes in a Shallow Marine Sandbank Environment

PubMed Central

Van Lancker, Vera; Baeye, Matthias

2015-01-01

As human pressure on the marine environment increases, safeguarding healthy and productive seas increasingly necessitates integrated, time- and cost-effective environmental monitoring. Employment of a Wave Glider proved very useful for the study of sediment transport in a shallow sandbank area in the Belgian part of the North Sea. During 22 days, data on surface and water-column currents and turbidity were recorded along 39 loops around an aggregate-extraction site. Correlation with wave and tidal-amplitude data allowed the quantification of current- and wave-induced advection and resuspension, important background information to assess dredging impacts. Important anomalies in suspended particulate matter concentrations in the water column suggested dredging-induced overflow of sediments in the near field (i.e., dynamic plume), and settling of finer-grained material in the far field (i.e., passive plume). Capturing the latter is a successful outcome to this experiment, since the location of dispersion and settling of a passive plume is highly dependent on the ruling hydro-meteorological conditions and thus difficult to predict. Deposition of the observed sediment plumes may cause habitat changes in the long-term. PMID:26070156

Assessing the potential of amino acid 13C patterns as a carbon source tracer in marine sediments: effects of algal growth conditions and sedimentary diagenesis

NASA Astrophysics Data System (ADS)

Larsen, T.; Bach, L. T.; Salvatteci, R.; Wang, Y. V.; Andersen, N.; Ventura, M.; McCarthy, M. D.

2015-08-01

Burial of organic carbon in marine sediments has a profound influence in marine biogeochemical cycles and provides a sink for greenhouse gases such as CO2 and CH4. However, tracing organic carbon from primary production sources as well as its transformations in the sediment record remains challenging. Here we examine a novel but growing tool for tracing the biosynthetic origin of amino acid carbon skeletons, based on naturally occurring stable carbon isotope patterns in individual amino acids (δ13CAA). We focus on two important aspects for δ13CAA utility in sedimentary paleoarchives: first, the fidelity of source diagnostic of algal δ13CAA patterns across different oceanographic growth conditions, and second, the ability of δ13CAA patterns to record the degree of subsequent microbial amino acid synthesis after sedimentary burial. Using the marine diatom Thalassiosira weissflogii, we tested under controlled conditions how δ13CAA patterns respond to changing environmental conditions, including light, salinity, temperature, and pH. Our findings show that while differing oceanic growth conditions can change macromolecular cellular composition, δ13CAA isotopic patterns remain largely invariant. These results emphasize that δ13CAA patterns should accurately record biosynthetic sources across widely disparate oceanographic conditions. We also explored how δ13CAA patterns change as a function of age, total nitrogen and organic carbon content after burial, in a marine sediment core from a coastal upwelling area off Peru. Based on the four most informative amino acids for distinguishing between diatom and bacterial sources (i.e., isoleucine, lysine, leucine and tyrosine), bacterially derived amino acids ranged from 10 to 15 % in the sediment layers from the last 5000 years, and up to 35 % during the last glacial period. The greater bacterial contributions in older sediments indicate that bacterial activity and amino acid resynthesis progressed, approximately as a

Silicon Isotopes of Marine Pore Water: Tracking the Destiny of Marine Biogenic Opal

NASA Astrophysics Data System (ADS)

Cassarino, L.; Hendry, K. R.

2017-12-01

Silicon isotopes (δ30Si) are a powerful tool for the studying of the past and present silicon cycles, which is closely linked to the carbon cycle. Siliceous phytoplankton, such as diatoms, as one of the major conveyors of carbon to marine sediments. δ30Si from fossil diatoms has been shown to represent past silicic acid (DSi) utilization in the photic zone, since the lighter isotope is preferentially incorporated in their skeleton, the frustule. This assumes that species in the sediments depict past blooms and that frustules are preserved in their initial state during burial. Here we present new silicon isotopes data of sea water and pore water of deep marine sediments from two contrasted environments, the Equatorial Atlantic and West Antarctic Peninsula. δ30Si and DSi concentration, of both sea water and pore water, are negatively correlated. Marine biogenic opal dissolution can be tracked using δ30Si signature of pore water as lighter signals and high DSi concentrations are associated with the biogenic silica. Our data enhances post depositional and diagenesis processes during burial with a clear highlight on the sediment water interface exchanges.

Molybdenum Cycling in Upwelling Sediments: An Example from Namibian Margin Sediments

NASA Astrophysics Data System (ADS)

Arnold, G. L.; Goldhammer, T.; Formolo, M.; Brunner, B.; Ferdelman, T.

2008-12-01

The paleo-redox application of molybdenum (Mo) isotopes is strongly tied to our knowledge of the modern marine Mo cycle. Elemental mass balance indicates that ~47% of the Mo supplied to the oceans is removed to deep sea sediments, leaving the remaining Mo to "near-shore" reducing sediments (1). The Black Sea is likely the best studied reducing environment with regards to Mo isotopes, yet accounts for only a small fraction of the Mo mass balance. The accumulation of Mo in continental margin sediments has been recently re-assessed and may account for a larger fraction of the marine Mo reservoir than previously thought (2). In the presence of sulfide, the molybdate anion is transformed, by the replacement of oxygen with sulfur, to particle reactive oxy-thiomolybdates (3). This is often cited as the mechanism by which Mo removal proceeds in the Black Sea where sulfide concentrations in the water are high. In contrast, in continental margin settings, the removal mechanism is poorly understood, and the extent to which sulfur cycling plays a role remains un-quantified. To better understand removal/cycling processes in a continental margin setting, where sulfide may only be present in the pore waters and not in the water column, Mo was studied in an array of marine settings off the Namibian coast. Surface sediments were collected across a transect from near-shore/high productivity to deep water/low productivity sediments. These sediments were incubated in bag experiments to study the relationship between sulfur and Mo cycling. Molybdenum concentrations in the Namibian sediments range from detrital values at the lowest productivity site to 25 ppm in surface sediments with high productivity. Preliminary results allude to a correlation between sulfate reduction rates and Mo accumulation in these sediments. Detailed studies of Mo, Mo isotopes, other trace metals, and sulfur investigations from both sediment cores and bag experiments will be presented. (1)Bertine and Turekian

An integrated bioremediation process for petroleum hydrocarbons removal and odor mitigation from contaminated marine sediment.

PubMed

Zhang, Zhen; Lo, Irene M C; Yan, Dickson Y S

2015-10-15

This study developed a novel integrated bioremediation process for the removal of petroleum hydrocarbons and the mitigation of odor induced by reduced sulfur from contaminated marine sediment. The bioremediation process consisted of two phases. In Phase I, acetate was dosed into the sediment as co-substrate to facilitate the sulfate reduction process. Meanwhile, akaganeite (β-FeOOH) was dosed in the surface layer of the sediment to prevent S(2-) release into the overlying seawater. In Phase II, NO3(-) was injected into the sediment as an electron acceptor to facilitate the denitrification process. After 20 weeks of treatment, the sequential integration of the sulfate reduction and denitrification processes led to effective biodegradation of total petroleum hydrocarbons (TPH), in which about 72% of TPH was removed. In Phase I, the release of S(2-) was effectively controlled by the addition of akaganeite. The oxidation of S(2-) by Fe(3+) and the precipitation of S(2-) by Fe(2+) were the main mechanisms for S(2-) removal. In Phase II, the injection of NO3(-) completely inhibited the sulfate reduction process. Most of residual AVS and S(0) were removed within 4 weeks after NO3(-) injection. The 16S rRNA clone library-based analysis revealed a distinct shift of bacterial community structure in the sediment over different treatment phases. The clones affiliated with Desulfobacterales and Desulfuromonadales were the most abundant in Phase I, while the clones related to Thioalkalivibrio sulfidophilus, Thiohalomonas nitratireducens and Sulfurimonas denitrificans predominated in Phase II. Copyright © 2015 Elsevier Ltd. All rights reserved.

Paleomagnetic Study of Marine Sediment Core OR715-21 from Eastern Offshore of Taiwan

NASA Astrophysics Data System (ADS)

Lee, T.; Wei, K.; Huh, C.

2009-12-01

This study presents paleomagnetic secular variation results of a marine sediment core, named as OR715-21, taken from eastern offshore of Taiwan (121.5°E, 22.7°N, water depth 760 m). The total recovered length is 1.87 meters. Sediments in the core mainly consist of gray clay and silt. Planktonic foraminiferal shells (>250 μm, >6 mg, Globigerinoides spp. and Orbulina universa) were picked from six levels of the core and subjected to AMS 14C dating for constructing the age model. The results indicated that this core could support the information for the last 7000 years. The averaged sedimentation rate is estimated to be of about 26.5 cm/kyr. Psuedo-single domain (PSD) magnetite is identified as the most important magnetic carrier. Alternating field (AF) demagnetization was applied to treat the u-channel samples of the core. The median destructive field of the samples distributed between 15~25 mT. The characteristic remanent magnetization could be resolved after 20 mT cleaning. The paleo-declinations of the samples varied about ±200 around their mean and their paleo-inclinations varied between 300 and 500 . The variation pattern of the paleo-declination is somehow similar to the pattern compiled by Hyoto et al. (1993) based on the lake and marine sediment records from Japan except the varied amplitude is less between 4000 and 5000 yrB.P. Using NRM/ARM after 20 mT cleaning to simulate the paleo-intensity secular variation, our record shows that an increased trend began from 6500 yrB.P. to 3000 yrB.P., but decreased after. Magnetic proxies of this core indicate that 4 stages of environmental changes has happened in the area studied: (1) high magnetite abundance with relative low oxidized magnetic mineral contents occurred during ~6900 to 6200 yrB.P.; (2) a relative low abundance of magnetite with relative high oxidized magnetic minerals during ~6200 to ~5400 yrB.P.; (3) an abnormal low HIRM with relative higher ARM/SIRM could be found during the time period of ~5400

Regional Models for Sediment Toxicity Assessment

EPA Science Inventory

This paper investigates the use of empirical models to predict the toxicity of sediment samples within a region to laboratory test organisms based on sediment chemistry. In earlier work, we used a large nationwide database of matching sediment chemistry and marine amphipod sedim...

Marine protected areas and resilience to sedimentation in the Solomon Islands

NASA Astrophysics Data System (ADS)

Halpern, B. S.; Selkoe, K. A.; White, C.; Albert, S.; Aswani, S.; Lauer, M.

2013-03-01

The ability of marine protected areas (MPAs) to provide protection from indirect stressors, via increased resilience afforded by decreased impact from direct stressors, remains an important and unresolved question about the role MPAs can play in broader conservation and resource management goals. Over a five-year period, we evaluated coral and fish community responses inside and outside three MPAs within the Roviana Lagoon system in Solomon Islands, where sedimentation pressure from upland logging is substantial. We found little evidence that MPAs decrease impact or improve conditions and instead found some potential declines in fish abundance. We also documented modest to high levels of poaching during this period. Where compliance with management is poor, and indirect stressors play a dominant role in determining ecosystem condition, as appears to be the case in Roviana Lagoon, MPAs may provide little management benefit.

Biota-Sediment Accumulation Factor Data

EPA Pesticide Factsheets

The Biota-Sediment Accumulation Factor contains approximately 20,000 biota-sediment accumulation factors (BSAFs) from 20 locations (mostly Superfund sites) for nonionic organic chemicals and pesticides. Fresh, tidal, and marine ecosystems are included in the data.

Imaging oxygen distribution in marine sediments. The importance of bioturbation and sediment heterogeneity.

PubMed

Pischedda, L; Poggiale, J C; Cuny, P; Gilbert, F

2008-06-01

The influence of sediment oxygen heterogeneity, due to bioturbation, on diffusive oxygen flux was investigated. Laboratory experiments were carried out with 3 macrobenthic species presenting different bioturbation behaviour patterns: the polychaetes Nereis diversicolor and Nereis virens, both constructing ventilated galleries in the sediment column, and the gastropod Cyclope neritea, a burrowing species which does not build any structure. Oxygen two-dimensional distribution in sediments was quantified by means of the optical planar optode technique. Diffusive oxygen fluxes (mean and integrated) and a variability index were calculated on the captured oxygen images. All species increased sediment oxygen heterogeneity compared to the controls without animals. This was particularly noticeable with the polychaetes because of the construction of more or less complex burrows. Integrated diffusive oxygen flux increased with oxygen heterogeneity due to the production of interface available for solute exchanges between overlying water and sediments. This work shows that sediment heterogeneity is an important feature of the control of oxygen exchanges at the sediment-water interface.

Comparative performances of eggs and embryos of sea urchin (Paracentrotus lividus) in toxicity bioassays used for assessment of marine sediment quality.

PubMed

Khosrovyan, A; Rodríguez-Romero, A; Salamanca, M J; Del Valls, T A; Riba, I; Serrano, F

2013-05-15

The potential toxicity of sediments from various ports was assessed by means of two different liquid-phase toxicity bioassays (acute and chronic) with embryos and eggs of sea urchin Paracentrotus lividus. Performances of embryos and eggs of P. lividus in these bioassays were compared for their interchangeable applicability in integrated sediment quality assessment. The obtained endpoints (percentages of normally developed plutei and fertilized eggs) were linked to physical and chemical properties of sediments and demonstrated dependence on sediment contamination. The endpoints in the two bioassays were strongly correlated and generally exhibited similar tendency throughout the samples. Therein, embryos demonstrated higher sensitivity to elutriate exposure, compared to eggs. It was concluded that these tests could be used interchangeably for testing toxicity of marine sediments. Preferential use of any of the bioassays can be determined by the discriminatory capacity of the test or vulnerability consideration of the test subject to the surrounding conditions. Copyright © 2013 Elsevier Ltd. All rights reserved.

Quantification of Microbial Communities in Subsurface Marine Sediments of the Black Sea and off Namibia.

PubMed

Schippers, Axel; Kock, Dagmar; Höft, Carmen; Köweker, Gerrit; Siegert, Michael

2012-01-01

Organic-rich subsurface marine sediments were taken by gravity coring up to a depth of 10 m below seafloor at six stations from the anoxic Black Sea and the Benguela upwelling system off Namibia during the research cruises Meteor 72-5 and 76-1, respectively. The quantitative microbial community composition at various sediment depths was analyzed using total cell counting, catalyzed reporter deposition - fluorescence in situ hybridization (CARD-FISH) and quantitative real-time PCR (Q-PCR). Total cell counts decreased with depths from 10(9) to 10(10) cells/mL at the sediment surface to 10(7)-10(9) cells/mL below one meter depth. Based on CARD-FISH and Q-PCR analyses overall similar proportions of Bacteria and Archaea were found. The down-core distribution of prokaryotic and eukaryotic small subunit ribosomal RNA genes (16S and 18S rRNA) as well as functional genes involved in different biogeochemical processes was quantified using Q-PCR. Crenarchaeota and the bacterial candidate division JS-1 as well as the classes Anaerolineae and Caldilineae of the phylum Chloroflexi were highly abundant. Less abundant but detectable in most of the samples were Eukarya as well as the metal and sulfate-reducing Geobacteraceae (only in the Benguela upwelling influenced sediments). The functional genes cbbL, encoding for the large subunit of RuBisCO, the genes dsrA and aprA, indicative of sulfate-reducers as well as the mcrA gene of methanogens were detected in the Benguela upwelling and Black Sea sediments. Overall, the high organic carbon content of the sediments goes along with high cell counts and high gene copy numbers, as well as an equal abundance of Bacteria and Archaea.

Abundance and Co-Distribution of Widespread Marine Archaeal Lineages in Surface Sediments of Freshwater Water Bodies across the Iberian Peninsula.

PubMed

Compte-Port, Sergi; Subirats, Jèssica; Fillol, Mireia; Sànchez-Melsió, Alexandre; Marcé, Rafael; Rivas-Ruiz, Pedro; Rosell-Melé, Antoni; Borrego, Carles M

2017-11-01

Archaea inhabiting marine and freshwater sediments have a relevant role in organic carbon mineralization, affecting carbon fluxes at a global scale. Despite current evidences suggesting that freshwater sediments largely contribute to this process, few large-scale surveys have been addressed to uncover archaeal diversity and abundance in freshwater sedimentary habitats. In this work, we quantified and high-throughput sequenced the archaeal 16S rRNA gene from surficial sediments collected in 21 inland waterbodies across the Iberian Peninsula differing in typology and trophic status. Whereas methanogenic groups were dominant in most of the studied systems, especially in organic-rich sediments, archaea affiliated to widespread marine lineages (the Bathyarchaeota and the Thermoplasmata) were also ubiquitous and particularly abundant in euxinic sediments. In these systems, Bathyarchaeota communities were dominated by subgroups Bathyarchaeota-6 (87.95 ± 12.71%) and Bathyarchaeota-15 (8.17 ± 9.2%) whereas communities of Thermoplasmata were mainly composed of members of the order Thermoplasmatales. Our results also indicate that Archaea accounted for a minor fraction of sedimentary prokaryotes despite remarkable exceptions in reservoirs and some stratified lakes. Copy numbers of archaeal and bathyarchaeotal 16S rRNA genes were significantly different when compared according to system type (i.e., lakes, ponds, and reservoirs), but no differences were obtained when compared according to their trophic status (from oligotrophy to eutrophy). Interestingly, we obtained significant correlations between the abundance of reads (Spearman r = 0.5, p = 0.021) and OTU richness (Spearman r = 0.677, p < 0.001) of Bathyarchaeota and Thermoplasmata across systems, reinforcing the hypothesis of a potential syntrophic interaction between members of both lineages.

Marine sediment-derived Streptomyces bacteria from British Columbia, Canada are a promising microbiota resource for the discovery of antimicrobial natural products.

PubMed

Dalisay, Doralyn S; Williams, David E; Wang, Xiao Ling; Centko, Ryan; Chen, Jessie; Andersen, Raymond J

2013-01-01

Representatives of the genus Streptomyces from terrestrial sources have been the focus of intensive research for the last four decades because of their prolific production of chemically diverse and biologically important compounds. However, metabolite research from this ecological niche had declined significantly in the past years because of the rediscovery of the same bioactive compounds and redundancy of the sample strains. More recently, a new picture has begun to emerge in which marine-derived Streptomyces bacteria have become the latest hot spot as new source for unique and biologically active compounds. Here, we investigated the marine sediments collected in the temperate cold waters from British Columbia, Canada as a valuable source for new groups of marine-derived Streptomyces with antimicrobial activities. We performed culture dependent isolation from 49 marine sediments samples and obtained 186 Streptomyces isolates, 47 of which exhibited antimicrobial activities. Phylogenetic analyses of the active isolates resulted in the identification of four different clusters of bioactive Streptomyces including a cluster with isolates that appear to represent novel species. Moreover, we explored whether these marine-derived Streptomyces produce new secondary metabolites with antimicrobial properties. Chemical analyses revealed structurally diverse secondary metabolites, including four new antibacterial novobiocin analogues. We conducted structure-activity relationships (SAR) studies of these novobiocin analogues against methicillin-resistant Staphylococcus aureus (MRSA). In this study, we revealed the importance of carbamoyl and OMe moieties at positions 3" and 4" of novobiose as well as the hydrogen substituent at position 5 of hydroxybenzoate ring for the anti-MRSA activity. Changes in the substituents at these positions dramatically impede or completely eliminate the inhibitory activity of novobiocins against MRSA.

Re-evaluating the oceanic magnesium and magnesium isotope budgets - the contribution of authigenic mineral formation in marine sediments

NASA Astrophysics Data System (ADS)

Berg, R. D.; Solomon, E. A.

2016-12-01

Formation of authigenic minerals in marine sediments is a globally significant geochemical process for several major element cycles in the ocean on the 105-107 year time scale, including the sulfur, potassium, and calcium cycles. However, the significance of these processes to the magnesium (Mg) cycle have not yet been well constrained, and thus are not typically included in global oceanic Mg budgets. Exclusion of this authigenic sink for Mg affects work derived from the existing Mg and Mg isotope budgets in the fields of paleo-oceanography and global geochemical cycling. To robustly constrain the magnitude of this sedimentary Mg sink in continental slope, rise, and abyssal environments, we estimate rates of Mg uptake in marine sediments using reactive-transport modeling of 200 pore water solute concentration profiles measured during scientific ocean drilling expeditions. The depth-integrated rates of Mg uptake are extrapolated globally using statistical machine learning methods, which are particularly well-suited for using with the wide variety of environments represented in the ocean drilling dataset. Due to the differences in Mg isotope fractionation during formation of authigenic clays versus carbonates, the relative proportion of the Mg flux being sequestered by these minerals may have a major effect on the oceanic Mg isotope record. We evaluate the processes controlling Mg uptake (authigenic clay and carbonate formation) at representative continental margin locations using pore water Mg isotope measurements. Results indicate that rates of Mg uptake are over an order of magnitude higher in continental margin settings than in the abyssal environment, likely due to greater organic matter degradation resulting in higher rates of carbonate formation and in situ weathering of primary silicates to authigenic clays. Preliminary results show that authigenic mineral formation in marine sediments is a major sink for Mg in the ocean, rivaling the ridge-crest hydrothermal

Reactive iron in marine sediments

NASA Technical Reports Server (NTRS)

Canfield, Donald E.

1989-01-01

The influence of reactive iron oxides on sediment pore-water chemistry is considered in detail. A carefully calibrated extraction scheme is used to determine the depth distributions of reactive iron phases at two very different localities: the relatively iron-rich Mississippi Delta and the relatively iron-poor FOAM site in Long Island Sound. Closed system incubations are used to characterize the rates of reaction between sulfide and both naturally occurring and pure iron mineral phases. Rates of iron liberation to pore solution are measured in the presence and absence of sulfate reduction, and the origin of dissolved iron in organic-rich sediments is speculated upon.

Multiple microtektite horizons in upper Eocene marine sediments: No evidence for mass extinctions

USGS Publications Warehouse

Keller, G.; D'Hondt, Steven L.; Vallier, T.L.

1983-01-01

Microtektites have been recovered from three horizons in eight middle Eocene to middle Oligocene marine sediment sequences. Five of these occurrences are coeval and of latest Eocene age (37.5 to 38.0 million years ago); three are coeval and of early late Eocene age (38.5 to 39.5 million years ago); and three are of middle Oligocene age (31 to 32 million years ago). In addition, rare probable microtektites have been found in sediments with ages of about 36.0 to 36.5 million years. The microtektite horizon at 37.5 to 38.0 million years can be correlated with the North American tektite-strewn field, which has a fission track age (minimum) of 34 to 35 million years and a paleomagnetic age of 37.5 to 38.0 million years. There is no evidence for mass faunal extinctions at any of the microtektite horizons. Many of the distinct faunal changes that occurred in the middle Eocene to middle Oligocene can be related to the formation of the Antarctic ice sheet and the associated cooling phenomena and intensification of bottom currents that led to large-scale dissolution of calcium carbonate and erosion, which created areally extensive hiatuses in the deep-sea sediment records. The occurrence of microtektite horizons of several ages and the lack of evidence for faunal extinctions suggest that the effects of extraterrestrial bolide impacts may be unimportant in the biologic realm during middle Eocene to middle Oligocene time.

Temporal variation on environmental variables and pollution indicators in marine sediments under sea Salmon farming cages in protected and exposed zones in the Chilean inland Southern Sea.

PubMed

Urbina, Mauricio A

2016-12-15

The impacts of any activity on marine ecosystems will depend on the characteristics of the receptor medium and its resilience to external pressures. Salmon farming industry develops along a constant gradient of hydrodynamic conditions in the south of Chile. However, the influence of the hydrodynamic characteristics (weak or strong) on the impacts of intensive salmon farming is still poorly understood. This one year study evaluates the impacts of salmon farming on the marine sediments of both protected and exposed marine zones differing in their hydrodynamic characteristics. Six physico-chemical, five biological variables and seven indexes of marine sediments status were evaluated under the salmon farming cages and control sites. Our results identified a few key variables and indexes necessary to accurately evaluate the salmon farming impacts on both protected and exposed zones. Interestingly, the ranking of importance of the variables and the temporality of the observed changes, varied depending on the hydrodynamic characteristics. Biological variables (nematodes abundance) and environmental indexes (Simpson's dominance, Shannon's diversity and Pielou evenness) are the first to reflect detrimental impacts under the salmon farming cages. Then the physico-chemical variables such as redox, sulphurs and phosphorus in both zones also show detrimental impacts. Based on the present results we propose that the hydrodynamic regime is an important driver of the magnitude and temporality of the effects of salmon farming on marine sediments. The variables and indexes that best reflect the effects of salmon farming, in both protected and exposed zones, are also described. Copyright © 2016. Published by Elsevier B.V.

Remediation of metal-contaminated marine sediments using active capping with limestone, steel slag, and activated carbon: a laboratory experiment.

PubMed

Park, Seong-Jik; Kang, Ku; Lee, Chang-Gu; Choi, Jae-Woo

2018-05-18

The objectives of this study are to assess the effectiveness of limestone (LS), steel slag (SS), and activated carbon (AC) as capping materials to sequester trace metals including As, Cd, Cr, Cu, Ni, Pb, and Zn in heavily contaminated marine sediments and to minimize the release of these metals into the water column. A flat flow tank was filled with 10 mm of capping material, contaminated sediments, and seawater, and the metal concentrations were monitored over 32 d. After completion of the flow tank experiments, the sediments below the capping material were sampled and were sequentially extracted. SS effectively reduced the As, Cr, Cu, Ni, Pb, and particularly Cd elution from the contaminated sediments to the overlying seawater. Adsorption and surface precipitation were the key mechanisms for interrupting the release of cationic trace metals by SS. LS was appropriate for interrupting the release of only Cu and Pb with high hydrolysis reaction constants. AC capping could interrupt the release of Cr, Cu, Ni, and particularly Zn from the sediments by binding with the metals via electrostatic interaction. The results obtained from the sequential extraction revealed that LS capping is appropriate for stabilizing Zn, whereas AC is appropriate for Cd and Pb. LS, SS, and AC can be applied effectively for remediation of sediments contaminated by trace metals because it interrupts their release and stabilizes the trace metals in the sediments.

Marine clathrate mining and sediment separation

DOEpatents

Borns, David J.; Hinkebein, Thomas E.; Lynch, Richard W.; Northrop, David A.

2001-01-01

A method and apparatus for mining of hydrocarbons from a hydrocarbon-containing clathrate such as is found on the ocean floor. The hydrocarbon containing clathrate is disaggregated from sediment by first disrupting clathrate-containing strata using continuous mining means such as a rotary tilling drum, a fluid injector, or a drill. The clathrate-rich portion of sediment thus disrupted from the sea floor strata are carried through the apparatus to regions of relative lower pressure and/or relative higher temperature where the clathrate further dissociates into component hydrocarbons and water. The hydrocarbon is recovered with the assistance of a gas that is injected and buoys the hydrocarbon containing clathrate helping it to rise to regions of lower pressure and temperature where hydrocarbon is released. The sediment separated from the hydrocarbon returns to the ocean floor.

Microeukaryotic diversity in marine environments, an analysis of surface layer sediments from the East Sea.

PubMed

Park, Soo-Je; Park, Byoung-Joon; Pham, Vinh Hoa; Yoon, Dae-No; Kim, Si-Kwan; Rhee, Sung-Keun

2008-06-01

Molecular techniques, based on clone library of 18S rRNA gene, were employed to ascertain the diversity of microeukaryotic organisms in sediments from the East Sea. A total of 261 clones were recovered from surface sediments. Most of the clone sequences (90%) were affiliated with protists, dominated by Ciliates (18%) and Dinoflagellates (19%) of Alveolates, phototrophic Stramenopiles (11%), and Cercozoa (20%). Many of the clones were related to uncultivated eukaryotes clones retrieved from anoxic environments with several highly divergent 18S rRNA gene sequences. However, no clones were related to cultivated obligate anaerobic protists. Protistan communities between subsurface layers of 1 and 9 cm shared 23% of total phylotypes which comprised 64% of total clones retrieved. Analysis of diversity indices and rarefaction curve showed that the protistan community within the 1 cm layer exhibited higher diversity than the 9 cm layer. Our results imply that diverse protists remain to be uncovered within marine benthic environments.

Widespread and Persistent Populations of a Major New Marine Actinomycete Taxon in Ocean Sediments

PubMed Central

Mincer, Tracy J.; Jensen, Paul R.; Kauffman, Christopher A.; Fenical, William

2002-01-01

A major taxon of obligate marine bacteria within the order Actinomycetales has been discovered from ocean sediments. Populations of these bacteria (designated MAR 1) are persistent and widespread, spanning at least three distinct ocean systems. In this study, 212 actinomycete isolates possessing MAR 1 morphologies were examined and all but two displayed an obligate requirement of seawater for growth. Forty-five of these isolates, representing all observed seawater-requiring morphotypes, were partially sequenced and found to share characteristic small-subunit rRNA signature nucleotides between positions 207 and 468 (Escherichia coli numbering). Phylogenetic characterization of seven representative isolates based on almost complete sequences of genes encoding 16S rRNA (16S ribosomal DNA) yielded a monophyletic clade within the family Micromonosporaceae and suggests novelty at the genus level. This is the first evidence for the existence of widespread populations of obligate marine actinomycetes. Organic extracts from cultured members of this new group exhibit remarkable biological activity, suggesting that they represent a prolific resource for biotechnological applications. PMID:12324350

Seabed photographs, sediment texture analyses, and sun-illuminated sea floor topography in the Stellwagen Bank National Marine Sanctuary region off Boston, Massachusetts

USGS Publications Warehouse

Valentine, Page C.; Gallea, Leslie B.; Blackwood, Dann S.; Twomey, Erin R.

2010-01-01

The U.S. Geological Survey, in collaboration with National Oceanic and Atmospheric Administration's National Marine Sanctuary Program, conducted seabed mapping and related research in the Stellwagen Bank National Marine Sanctuary region from 1993 to 2004. The mapped area is approximately 3,700 km (1,100 nmi) in size and was subdivided into 18 quadrangles. An extensive series of sea-floor maps of the region based on multibeam sonar surveys has been published as paper maps and online in digital format (PDF, EPS, PS). In addition, 2,628 seabed-sediment samples were collected and analyzed and are in the usSEABED: Atlantic Coast Offshore Surficial Sediment Data Release. This report presents for viewing and downloading the more than 10,600 still seabed photographs that were acquired during the project. The digital images are provided in thumbnail, medium (1536 x 1024 pixels), and high (3071 x 2048) resolution. The images can be viewed by quadrangle on the U.S. Geological Survey Woods Hole Coastal and Marine Science Center's photograph database. Photograph metadata are embedded in each image in Exchangeable Image File Format and also provided in spreadsheet format. Published digital topographic maps and descriptive text for seabed features are included here for downloading and serve as context for the photographs. An interactive topographic map for each quadrangle shows locations of photograph stations, and each location is linked to the photograph database. This map also shows stations where seabed sediment was collected for texture analysis; the results of grain-size analysis and associated metadata are presented in spreadsheet format.

Post-depositional formation of vivianite-type minerals alters sediment phosphorus records

NASA Astrophysics Data System (ADS)

Dijkstra, Nikki; Hagens, Mathilde; Egger, Matthias; Slomp, Caroline P.

2018-02-01

Phosphorus (P) concentrations in sediments are frequently used to reconstruct past environmental conditions in freshwater and marine systems, with high values thought to be indicative of a high biological productivity. Recent studies suggest that the post-depositional formation of vivianite, an iron(II)-phosphate mineral, might significantly alter trends in P with sediment depth. To assess its importance, we investigate a sediment record from the Bornholm Basin that was retrieved during the Integrated Ocean Drilling Program (IODP) Baltic Sea Paleoenvironment Expedition 347 in 2013, consisting of lake sediments overlain by brackish-marine deposits. Combining bulk sediment geochemistry with microanalysis using scanning electron microscope energy dispersive spectroscopy (SEM-EDS) and synchrotron-based X-ray absorption spectroscopy (XAS), we demonstrate that vivianite-type minerals rich in manganese and magnesium are present in the lake deposits just below the transition to the brackish-marine sediments (at 11.5 to 12 m sediment depth). In this depth interval, phosphate that diffuses down from the organic-rich, brackish-marine sediments meets porewaters rich in dissolved iron in the lake sediments, resulting in the precipitation of iron(II) phosphate. Results from a reactive transport model suggest that the peak in iron(II) phosphate originally occurred at the lake-marine transition (9 to 10 m) and moved downwards due to changes in the depth of a sulfidization front. However, its current position relative to the lake-marine transition is stable as the vivianite-type minerals and active sulfidization fronts have been spatially separated over time. Experiments in which vivianite was subjected to sulfidic conditions demonstrate that incorporation of manganese or magnesium in vivianite does not affect its susceptibility to sulfide-induced dissolution. Our work highlights that post-depositional formation of iron(II) phosphates such as vivianite has the potential to strongly

Transfer of radiocaesium from contaminated bottom sediments to marine organisms through benthic food chains in post-Fukushima and post-Chernobyl periods

NASA Astrophysics Data System (ADS)

Bezhenar, Roman; Jung, Kyung Tae; Maderich, Vladimir; Willemsen, Stefan; de With, Govert; Qiao, Fangli

2016-05-01

After the earthquake and tsunami on 11 March 2011 damaged the Fukushima Dai-ichi Nuclear Power Plant (FDNPP), an accidental release of a large amount of radioactive isotopes into both the air and the ocean occurred. Measurements provided by the Japanese agencies over the past 5 years show that elevated concentrations of 137Cs still remain in sediments, benthic organisms, and demersal fishes in the coastal zone around the FDNPP. These observations indicate that there are 137Cs transfer pathways from bottom sediments to the marine organisms. To describe the transfer quantitatively, the dynamic food chain biological uptake model of radionuclides (BURN) has been extended to include benthic marine organisms. The extended model takes into account both pelagic and benthic marine organisms grouped into several classes based on their trophic level and type of species: phytoplankton, zooplankton, and fishes (two types: piscivorous and non-piscivorous) for the pelagic food chain; deposit-feeding invertebrates, demersal fishes fed by benthic invertebrates, and bottom omnivorous predators for the benthic food chain; crustaceans, mollusks, and coastal predators feeding on both pelagic and benthic organisms. Bottom invertebrates ingest organic parts of bottom sediments with adsorbed radionuclides which then migrate up through the food chain. All organisms take radionuclides directly from water as well as food. The model was implemented into the compartment model POSEIDON-R and applied to the north-western Pacific for the period of 1945-2010, and then for the period of 2011-2020 to assess the radiological consequences of 137Cs released due to the FDNPP accident. The model simulations for activity concentrations of 137Cs in both pelagic and benthic organisms in the coastal area around the FDNPP agree well with measurements for the period of 2011-2015. The decrease constant in the fitted exponential function of simulated concentration for the deposit-feeding invertebrates (0.45 yr-1

Geochemistry of recent aragonite-rich sediments in Mediterranean karstic marine lakes: Trace elements as pollution and palaeoredox proxies and indicators of authigenic mineral formation.

PubMed

Sondi, Ivan; Mikac, Nevenka; Vdović, Neda; Ivanić, Maja; Furdek, Martina; Škapin, Srečo D

2017-02-01

This study investigates the geochemical characteristics of recent shallow-water aragonite-rich sediments from the karstic marine lakes located in the pristine environment on the island of Mljet (Adriatic Sea). Different trace elements were used as authigenic mineral formation, palaeoredox and pollution indicators. The distribution and the historical record of trace elements deposition mostly depended on the sedimentological processes associated with the formation of aragonite, early diagenetic processes governed by the prevailing physico-chemical conditions and on the recent anthropogenic activity. This study demonstrated that Sr could be used as a proxy indicating authigenic formation of aragonite in a marine carbonate sedimentological environment. Distribution of the redox sensitive elements Mo, Tl, U and Cd was used to identify changes in redox conditions in the investigated lake system and to determine the geochemical cycle of these elements through environmental changes over the last 100 years. The significant enrichment of these elements and the presence of early formed nanostructured authigenic framboidal pyrite in laminated deeper parts of sediment in Malo Jezero, indicate sporadic events of oxygen-depleted euxinic conditions in the recent past. Concentrations of trace elements were in the range characteristic for non-contaminated marine carbonates. However, the increase in the concentrations of Zn, Cu, Pb, Sn, Bi in the upper-most sediment strata of Veliko Jezero indicates a low level of trace element pollution, resulting from anthropogenic inputs over the last 40 years. The presence of butyltin compounds (BuTs) in the surface sediment of Veliko Jezero additionally indicates the anthropogenic influence in the recent past. Copyright © 2016 Elsevier Ltd. All rights reserved.

VARIATIONS IN MINERAL MATTER CONTENT OF A PEAT DEPOSIT IN MAINE RESTING ON GLACIO-MARINE SEDIMENTS.

USGS Publications Warehouse

Cameron, Cornelia C.; Schruben, Paul

1983-01-01

The Great Heath, Washington County, Maine, is an excellent example of a multidomed ombrotrophic peatland resting on a gently undulating surface of glacio-marine sediments and towering above modern streams. A comprehensive study sponsored by the Geological Survey of Maine in cooperation with the U. S. Geological Survey included preparation of a contoured surficial geology map on which are located 81 core sites. Eight cross sections accompany the map showing occurrence and thickness of three types of organic material and locations of cored sample analyses. Refs.

Geotechnical and Geoacoustic Investigation of Seafloor Sediments on Boston Harbor Approaches

DTIC Science & Technology

2017-01-25

Geoacoustic Investigation of Seafloor Sediments on Boston Harbor Approaches Andrei Abelev Marine Physics Branch Marine Geosciences Division Peter...LIMITATION OF ABSTRACT Geotechnical and Geoacoustic Investigation of Seafloor Sediments on Boston Harbor Approaches Andrei Abelev, Peter Herdic...sampling and analysis series for classification and characterization of the surficial seafloor sediment in the Boston Harbor approaches . 25-01-2017

D/H Ratios of Marine Lipids from Santa Barbara Basin Sediments

NASA Astrophysics Data System (ADS)

Li, C.; Sessions, A.; Kinnaman, F.; Valentine, D.

2006-12-01

With the early successful application of compound-specific D/H analyses to reconstructing paleoclimate records, most subsequent research has focused on understanding organic D/H fractionations in terrestrial environments. Thus we still know very little about natural D/H variations in lipids derived from marine organisms, or indeed if any such variations exist. We have therefore conducted an extensive survey of lipid δD values in two sediment cores collected in the Santa Barbara Basin. These data allow us to examine 1) variations between the lipid products of different organisms, 2) down-core variations due to diagenesis, and 3) differences between sediments deposited under oxic or anoxic bottom-water conditions. Our results show that considerable D/H variability between different marine products does exist. δD values of n-alkanes (except n-C35) ranged from -94 to -175 ‰, and exhibit a systematic offset between odd and even carbon numbers. The δD value of n-C35 is anomalous at -220‰. Isotopic compositions of n-alkanols range from -126 to -221 , with a pattern of progressive D depletion with chain length observed for free alcohols. δD values of sterols range from -215 to -309‰, and show no systematic variation with carbon number. However, offsets do exist between the saturated, monounsaturated, and diunsaturated sterols. Sterols as a group are strongly depleted in D relative to the bacterial-derived hopanols (-166 to -232‰), suggesting possible differences in biosynthetic fractionations by bacteria and eukaryotes. Phytol and phytane δD values roughly ranged from -360 to -410‰, while phytanol was systematically enriched at -300 to -340‰. Fatty acids encompassed much greater variability, with dD values ranging from -55 to -270‰. In general, saturated fatty acids are enriched in D relative to their unsaturated analogs, and long-chain (>C24) acids are enriched in D relative to short-chain (

The Impacts of Episodic Storm and Flood Events on Carbon and Sediment Delivery to Gulf of Mexico Sediments

NASA Astrophysics Data System (ADS)

Schreiner, K. M.; Carlin, J. A.; Sayers, L.; Swenson, J.

2017-12-01

Marine sediments are an important long-term reservoir for both recently fixed organic carbon (OC) and ancient rock derived OC, much of which is delivered by rivers. The ratio between these two sources of OC in turn regulates atmospheric levels of oxygen and carbon dioxide over geologic time, making this riverine delivery of OC, primarily carried by sediments, an important flux in the global carbon cycle. However, while the overall magnitude of these fluxes are relatively well known, it remains to be determined the importance of episodic events, like storms and floods, in the flux of OC from terrestrial to marine environments. Here, we present data from a 34 cm core collected from the Gulf of Mexico at a mid-shelf distal depocenter for the Brazos River in 2015, during a strong El Nino when that area of the country was experiencing 100-year flood events and anomalously high river flow. Based on analysis of the radioactive isotope 7Be, approximately the top 7-8 cm of the sediment in this core was deposited during this flood event. Both bulk elemental (C, N, and stable carbon isotopes) and chemical biomarker (lignin-phenol) data has been combined to provide information of the origin and chemistry of the OC in this core both before and during flooding. C:N and d13C indicate a mixture of marine-sourced and terrestrially-sourced OC throughout the length of the core with very little variation between the flood layer and deeper sediments. However, lignin-phenol concentrations are higher in flood-deposited sediment, indicating that this sediment is likely terrestrially-sourced. Lignin-phenol indicators of OC degradation state (Acid:Aldehyde ratios) indicate that flood sediment is fresher and less degraded than deeper sediments. Taken together, these results indicate that 1. Bulk analyses are not enough to determine OC source and the importance of flood events in OC cycling and 2. Episodic events like floods could have an oversized impact on OC storage in marine sediments.

Toxicity, Bioaccumulation and Biotransformation of Silver Nanoparticles in Marine Organisms.

EPA Science Inventory

The toxicity, bioaccumulation and biotransformation of citrate and polyvinylpyrrolidone (PVP) coated silver nanoparticles (NPs) (AgNP-citrate and AgNP-PVP) in marine organisms via marine sediment exposure was investigated. Results from 7-d sediment toxicity tests indicate that Ag...

Evidence for the Existence of Autotrophic Nitrate-Reducing Fe(II)-Oxidizing Bacteria in Marine Coastal Sediment

PubMed Central

Laufer, Katja; Røy, Hans; Jørgensen, Bo Barker

2016-01-01

ABSTRACT Nitrate-reducing Fe(II)-oxidizing microorganisms were described for the first time ca. 20 years ago. Most pure cultures of nitrate-reducing Fe(II) oxidizers can oxidize Fe(II) only under mixotrophic conditions, i.e., when an organic cosubstrate is provided. A small number of nitrate-reducing Fe(II)-oxidizing cultures have been proposed to grow autotrophically, but unambiguous evidence for autotrophy has not always been provided. Thus, it is still unclear whether or to what extent Fe(II) oxidation coupled to nitrate reduction is an enzymatically catalyzed and energy-yielding autotrophic process or whether Fe(II) is abiotically oxidized by nitrite from heterotrophic nitrate reduction. The aim of the present study was to find evidence for the existence of autotrophic nitrate-reducing Fe(II) oxidizers in coastal marine sediments. Microcosm incubations showed that with increasing incubation times, the stoichiometric ratio of reduced nitrate/oxidized Fe(II) [NO3−reduced/Fe(II)oxidized] decreased, indicating a decreasing contribution of heterotrophic denitrification and/or an increasing contribution of autotrophic nitrate-reducing Fe(II) oxidation over time. After incubations of sediment slurries for >10 weeks, nitrate-reducing activity ceased, although nitrate was still present. This suggests that heterotrophic nitrate reduction had ceased due to the depletion of readily available organic carbon. However, after the addition of Fe(II) to these batch incubation mixtures, the nitrate-reducing activity resumed, and Fe(II) was oxidized, indicating the activity of autotrophic nitrate-reducing Fe(II) oxidizers. The concurrent reduction of 14C-labeled bicarbonate concentrations unambiguously proved that autotrophic C fixation occurred during Fe(II) oxidation and nitrate reduction. Our results clearly demonstrated that autotrophic nitrate-reducing Fe(II)-oxidizing bacteria were present in the investigated coastal marine sediments. IMPORTANCE Twenty years after the

Radioecologycal study of {sup 239/240}Pu in Bangka Island and Muria Peninsula: Determination of {sup 239/240}Pu in marine sediment and seawater as part of baseline data collecting for sitting of candidates of first Indonesia NPP

DOE Office of Scientific and Technical Information (OSTI.GOV)

Suseno, Heny, E-mail: henis@batan.go.id; Wisnubroto, Djarot S.

Radioisotope Pu-239/240 are alpha emitting nuclides important indicators of radioactive contamination of the marine environment. Global fallout is the main source of plutonium in the marine environment. There are very limited study on {sup 239/240}Pu in Indonesia coastal environments. The data of this radioisotopes is needed for baseline data of nuclear power plant (NPP) site candidates both in Bangka Island and Muria Peninsula. Bottom sediments play an important role in radioecological studies of the marine environment because a large proportion of radioactive substances entering the sea is adsorbed over time onto suspended particulate matter and deposited in sediments. Plutonium ismore » particle reactive and deposited in marine sediment. Radioisotope {sup 239/240}Pu was determinated by alpha spectrometry after radiochemical procedure that was performed in both water and marine sediment from Bangka Island and Muria Peninsula. The sediment baseline of concentration {sup 239/240}Pu in Bangka Island and Muria Peninsula were range from 0.013 to 0.021 Bq.kg{sup −1} and 0.018 to 0.024 Bq.kg{sup −1} respectively. The water baseline concentration this isotope were range from 2.73 to 4.05 mBq.m{sup −3} and 2.98 to 4.50 mBq.m{sup −3}.« less

Effects of mineral amendments on trace elements leaching from pre-treated marine sediment after simulated rainfall events.

PubMed

Hurel, C; Taneez, M; Volpi Ghirardini, A; Libralato, G

2017-01-01

Bauxite extraction by-products (red mud) were used to evaluate their potential ability to stabilize trace elements from dredged and aerated/humidified marine sediment. The investigated by-products were: bauxaline ® (BX) that is a press-filtered red mud; bauxsol™(BS) that is a press-filtered red mud previously washed with excess of seawater, and gypsum neutralized bauxaline ® (GBX). These materials were separately mixed to dredged composted sediment sample considering 5% and 20% sediment: stabilizer ratios. For pilot experiments, rainfall events were regularly simulated for 3 months. Concentrations of As, Mo, Cd, Cr, Zn, Cu, and Ni were analyzed in collected leachates as well as toxicity. Results showed that Cd, Mo, Zn, and Cu were efficiently stabilized in the solid matrix when 20% of BX, BS, and GBX was applied. Consequently, toxicity of leachates was lower than for the untreated sediment, meaning that contaminants mobility was reduced. A 5% GBX was also efficient for Mo, Zn and Cu stabilization. In all scenarios, As stabilization was not improved. Compared to all other monitored elements, Mo mobility seemed to depend upon temperature-humidity conditions during pilot experiments suggesting the need of further investigations. Copyright © 2016 Elsevier Ltd. All rights reserved.

EVALUATION OF THE EFFECTS OF COAL FLY ASH AMENDMENTS ON THE TOXICITY OF A CONTAMINATED MARINE SEDIMENT

PubMed Central

Burgess, Robert M.; Perron, Monique M.; Friedman, Carey L.; Suuberg, Eric M.; Pennell, Kelly G.; Cantwell, Mark G.; Pelletier, Marguerite C.; Ho, Kay T.; Serbst, Jonathan R.; Ryba, Stephan A.

2013-01-01

Approaches for cleaning-up contaminated sediments range from dredging to in situ treatment. In the present report, we discuss the effects of amending reference and contaminated sediments with coal fly ash to reduce the bioavailability and toxicity of a field sediment contaminated with polycyclic aromatic hydrocarbons (PAHs). Six fly ashes and a coconut charcoal were evaluated in 7 d whole sediment toxicity tests with a marine amphipod (Ampelisca abdita) and mysid (Americamysis bahia). Fly ashes with high carbon content and the coconut charcoal showed proficiency at reducing toxicity. Some of the fly ashes demonstrated toxicity in the reference treatments. It is suspected that some of this toxicity is related to the presence of ammonia associated with fly ashes as a result of post-oxidation treatment to reduce nitrous oxides emissions. Relatively simple methods exist to remove ammonia from fly ash prior to use and fly ashes with low ammonia content are available. Fly ashes were also shown to effectively reduce overlying water concentrations of several PAHs. There was no evidence of the release of the metals cadmium, copper, nickel or lead from the fly ashes. A preliminary 28 d polychaete bioaccumulation study with one of the high carbon fly ashes and a reference sediment was also performed. Although preliminary, there was no evidence of adverse effects to worm growth or lipid content, or the accumulation of PAHs or mercury from exposure to the fly ash. These data show fly ashes with high carbon contents may represent viable remedial materials for reducing the bioavailability of organic contaminants in sediments. PMID:18717615

Influence of acid volatile sulfide and metal concentrations on metal bioavailability to marine invertebrates in contaminated sediments

USGS Publications Warehouse

Lee, B.-G.; Lee, J.-S.; Luoma, S.N.; Choi, H.J.; Koh, C.-H.

2000-01-01

An 18-day microcosm study was conducted to evaluate the influence of acid volatile sulfides (AVS) and metal additions on bioaccumulation from sediments of Cd, Ni, and Zn in two clams (Macoma balthica and Potamocorbula amurensis) and three marine polychaetes (Neanthes arenaceodentata, Heteromastus filiformis, and Spiophanes missionensis). Manipulation of AVS by oxidation of naturally anoxic sediments allowed use of metal concentrations typical of nature and evaluation of processes important to chronic metal exposure. A vertical sediment column similar to that often found in nature was used to facilitate realistic biological behavior. Results showed that AVS or porewater (PW) metals controlled bioaccumulation in only 2 of 15 metal-animal combinations. Bioaccumulation of all three metals by the bivalves was related significantly to metal concentrations extracted from sediments (SEM) but not to [SEM - AVS] or PW metals. SEM predominantly influenced bioaccumulation of Ni and Zn in N. arenaceodentata, but Cd bioaccumulation followed PW Cd concentrations. SEM controlled tissue concentrations of all three metals in H. filiformis and S. missionensis, with minor influences from metal-sulfide chemistry. Significant bioaccumulation occurred when SEM was only a small fraction of AVS in several treatments. Three factors appeared to contribute to the differences between these bioaccumulation results and the results from toxicity tests reported previously: differences in experimental design, dietary uptake, and biological attributes of the species, including mode and depth of feeding.An 18-day microcosm study was conducted to evaluate the influence of acid volatile sulfides (AVS) and metal additions on bioaccumulation from sediments of Cd, Ni, and Zn in two clams (Macoma balthica and Potamocorbula amurensis) and three marine polychaetes (Neanthes arenaceodentata, Heteromastus filiformis, and Spiophanes missionensis). Manipulation of AVS by oxidation of naturally anoxic sediments

Spatial distributions and deposition chronology of short chain chlorinated paraffins in marine sediments across the Chinese Bohai and Yellow Seas.

PubMed

Zeng, Lixi; Chen, Ru; Zhao, Zongshan; Wang, Thanh; Gao, Yan; Li, An; Wang, Yawei; Jiang, Guibin; Sun, Liguang

2013-10-15

As the most complex halogenated contaminants, short chain chlorinated paraffins (SCCPs) are scarcely reported in marine environments. In this work, a total of 117 surficial sediment (0-3 cm) samples and two sediment cores were collected from the Chinese Bohai and Yellow Seas to systematically study the spatial and temporal trends of SCCPs at a large scale in the Chinese marine environment. Total SCCP concentrations in the surficial sediments were in the range of 14.5-85.2 ng g(-1) (dry weight, d.w.) with an average level of 38.4 ng g(-1) d.w. Spatial distribution showed a decreasing trend with the distance from the coast to the open waters. Compositional pattern analysis suggested that C10 was the most predominant homologue group, followed by C11, C12, and C13 homologue groups. The concentrations of total SCCPs in sediment cores ranged from 11.6 to 94.7 ng g(-1) d.w. for YS1 and from 14.7 to 195.6 ng g(-1) d.w. for YS2, with sharp rise from the early 1950s to present based on (210)Pb dating technique. The historical records in cores correspond well to the production and usage changes of CPs in China. Multivariate regression statistics indicate TOC, latitude and longitude are the major factors influencing surficial SCCP levels in the Chinese East Seas by combining analysis with the data from the East China Sea (R(2) = 0.332, p < 0.01). These findings indicated that the sources of SCCPs were mainly from river outflows via ocean current and partly from atmospheric depositions by East Asian monsoon in the sampling areas.