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Sample records for developed three-dimensional software

  1. Potentials for Spatial Geometry Curriculum Development with Three-Dimensional Dynamic Geometry Software in Lower Secondary Mathematics

    ERIC Educational Resources Information Center

    Miyazaki, Mikio; Kimiho, Chino; Katoh, Ryuhei; Arai, Hitoshi; Ogihara, Fumihiro; Oguchi, Yuichi; Morozumi, Tatsuo; Kon, Mayuko; Komatsu, Kotaro

    2012-01-01

    Three-dimensional dynamic geometry software has the power to enhance students' learning of spatial geometry. The purpose of this research is to clarify what potential using three-dimensional dynamic geometry software can offer us in terms of how to develop the spatial geometry curriculum in lower secondary schools. By focusing on the impacts the…

  2. Comparison of two three-dimensional cephalometric analysis computer software

    PubMed Central

    Sawchuk, Dena; Alhadlaq, Adel; Alkhadra, Thamer; Carlyle, Terry D; Kusnoto, Budi; El-Bialy, Tarek

    2014-01-01

    Background: Three-dimensional cephalometric analyses are getting more attraction in orthodontics. The aim of this study was to compare two softwares to evaluate three-dimensional cephalometric analyses of orthodontic treatment outcomes. Materials and Methods: Twenty cone beam computed tomography images were obtained using i-CAT® imaging system from patient's records as part of their regular orthodontic records. The images were analyzed using InVivoDental5.0 (Anatomage Inc.) and 3DCeph™ (University of Illinois at Chicago, Chicago, IL, USA) software. Before and after orthodontic treatments data were analyzed using t-test. Results: Reliability test using interclass correlation coefficient was stronger for InVivoDental5.0 (0.83-0.98) compared with 3DCeph™ (0.51-0.90). Paired t-test comparison of the two softwares shows no statistical significant difference in the measurements made in the two softwares. Conclusions: InVivoDental5.0 measurements are more reproducible and user friendly when compared to 3DCeph™. No statistical difference between the two softwares in linear or angular measurements. 3DCeph™ is more time-consuming in performing three-dimensional analysis compared with InVivoDental5.0. PMID:25426454

  3. Software Development for a Three-Dimensional Gravity Inversion and Application to Study of the Border Ranges Fault System, South-Central Alaska

    NASA Astrophysics Data System (ADS)

    Cardenas, R.; Doser, D. I.; Baker, M. R.

    2011-12-01

    the BRFS, its role in the formation and petroleum generation processes of the upper Cook Inlet and Susitna Basins is poorly understood. Model Generation The gravitational contributions are computed using a geophysics formulation, namely the vertical line element. g = πR2Gρ(x2+y2+z2)-1/2 Each line element is semi-infinite and extends from the top to the bottom of each structural layer. The user may define a three-dimensional body at a location on the surface. Each vertex of the body will be represented as separate nodes in the grid. The contribution of the body to the gravity value will be computed as a volume integral and added to the overall gravity contributions of other nodes on the surface. The user will also be able to modify the elevation and density of the defined body in real time. The most noted effectiveness of the software is in the user-defined a priori information facilitating real time interpretations and the computational efficiency of the model solution by using vertical line elements to address structural bodies with complex geometry.

  4. An application of three-dimensional modeling in the cutting machine of intersecting line software

    NASA Astrophysics Data System (ADS)

    Lu, Jixiang

    2011-11-01

    This paper developed a software platform of intersecting line cutting machine. The software platform consists of three parts. The first is the interface of parameter input and modify, the second is the three-dimensional display of main tube and branch tube, and the last is the cutting simulation and G code output. We can obtain intersection data by intersection algorithm, and we also make three-dimensional model and dynamic simulation on the data of intersecting line cutting. By changing the parameters and the assembly sequence of main tube and branch tube, you can see the modified two-dimensional and three-dimensional graphics and corresponding G-code output file. This method has been applied to practical cutting machine of intersecting line software.

  5. Three-dimensional perspective software for representation of digital imagery data. [Olympic National Park, Washington

    NASA Technical Reports Server (NTRS)

    Junkin, B. G.

    1980-01-01

    A generalized three dimensional perspective software capability was developed within the framework of a low cost computer oriented geographically based information system using the Earth Resources Laboratory Applications Software (ELAS) operating subsystem. This perspective software capability, developed primarily to support data display requirements at the NASA/NSTL Earth Resources Laboratory, provides a means of displaying three dimensional feature space object data in two dimensional picture plane coordinates and makes it possible to overlay different types of information on perspective drawings to better understand the relationship of physical features. An example topographic data base is constructed and is used as the basic input to the plotting module. Examples are shown which illustrate oblique viewing angles that convey spatial concepts and relationships represented by the topographic data planes.

  6. Three-dimensional Printing in Developing Countries.

    PubMed

    Ibrahim, Ahmed M S; Jose, Rod R; Rabie, Amr N; Gerstle, Theodore L; Lee, Bernard T; Lin, Samuel J

    2015-07-01

    The advent of 3-dimensional (3D) printing technology has facilitated the creation of customized objects. The lack of regulation in developing countries renders conventional means of addressing various healthcare issues challenging. 3D printing may provide a venue for addressing many of these concerns in an inexpensive and easily accessible fashion. These may potentially include the production of basic medical supplies, vaccination beads, laboratory equipment, and prosthetic limbs. As this technology continues to improve and prices are reduced, 3D printing has the potential ability to promote initiatives across the entire developing world, resulting in improved surgical care and providing a higher quality of healthcare to its residents. PMID:26301132

  7. Three-dimensional Printing in Developing Countries

    PubMed Central

    Ibrahim, Ahmed M. S.; Jose, Rod R.; Rabie, Amr N.; Gerstle, Theodore L.; Lee, Bernard T.

    2015-01-01

    Summary: The advent of 3-dimensional (3D) printing technology has facilitated the creation of customized objects. The lack of regulation in developing countries renders conventional means of addressing various healthcare issues challenging. 3D printing may provide a venue for addressing many of these concerns in an inexpensive and easily accessible fashion. These may potentially include the production of basic medical supplies, vaccination beads, laboratory equipment, and prosthetic limbs. As this technology continues to improve and prices are reduced, 3D printing has the potential ability to promote initiatives across the entire developing world, resulting in improved surgical care and providing a higher quality of healthcare to its residents. PMID:26301132

  8. The Development of Three-Dimensional Gravity Inversion Software Applied to the Location and Geometry of the Border Ranges Fault System, South-Central Alaska

    NASA Astrophysics Data System (ADS)

    Cardenas, R.; Doser, D. I.; Mankhemthong, N.; Baker, M. R.

    2012-12-01

    Summary The Border Ranges Fault (BRFS) system bounds the Cook Inlet and Susitna Basins, an important petroleum province within south-central Alaska. The inversion utilizes gravity data constrained with geophysical, borehole, and surface geological information. The gravity inversion software was developed and tested by comparing and verifying several plausible structural models using several layers of geologic structure along the BRFS. The novel inversion approach involves directly modeling known geology, initially free-air corrected data, and revising a priori uncertainties on the geologic model to allow comparisons to alternative interpretations. Previous modeling of the BRFS using geophysical data has been limited due to the complexity of local geology and structure, both of shallow crustal features and the deeper subduction zone. Since this inversion is based on a sequence of gridded surfaces, it is feasible to develop software to help build these gridded geologic models. The gravity surveys are used in conjunction with known topology to create gridded surfaces. The software uses a Generalized, Nonlinear Least-Squares criterion to calculate the density solution of each gridded surface based on forward computations involving semi-infinite vertical line elements. The user has the capacity to observe the gravity misfit and make adjustments to the "a priori" information upon careful examination of each computed structural model. By varying several input parameters, the user can yield a range of plausible density models for making comparisons to several interpretations. Forward Model Computations The gravitational contributions are computed using a geophysics formulation, namely the vertical line element. g = πR2Gρ( x2 + y2 + z2)-1/2 Each line element is semi-infinite and extends from the top to the bottom of each structural layer. The contribution of the body to the gravity measurement will be computed as a volume integral and added to the overall contributions of

  9. Is Three-Dimensional Soft Tissue Prediction by Software Accurate?

    PubMed

    Nam, Ki-Uk; Hong, Jongrak

    2015-11-01

    The authors assessed whether virtual surgery, performed with a soft tissue prediction program, could correctly simulate the actual surgical outcome, focusing on soft tissue movement. Preoperative and postoperative computed tomography (CT) data for 29 patients, who had undergone orthognathic surgery, were obtained and analyzed using the Simplant Pro software. The program made a predicted soft tissue image (A) based on presurgical CT data. After the operation, we obtained actual postoperative CT data and an actual soft tissue image (B) was generated. Finally, the 2 images (A and B) were superimposed and analyzed differences between the A and B. Results were grouped in 2 classes: absolute values and vector values. In the absolute values, the left mouth corner was the most significant error point (2.36 mm). The right mouth corner (2.28 mm), labrale inferius (2.08 mm), and the pogonion (2.03 mm) also had significant errors. In vector values, prediction of the right-left side had a left-sided tendency, the superior-inferior had a superior tendency, and the anterior-posterior showed an anterior tendency. As a result, with this program, the position of points tended to be located more left, anterior, and superior than the "real" situation. There is a need to improve the prediction accuracy for soft tissue images. Such software is particularly valuable in predicting craniofacial soft tissues landmarks, such as the pronasale. With this software, landmark positions were most inaccurate in terms of anterior-posterior predictions. PMID:26594988

  10. Development of an interactive anatomical three-dimensional eye model.

    PubMed

    Allen, Lauren K; Bhattacharyya, Siddhartha; Wilson, Timothy D

    2015-01-01

    The discrete anatomy of the eye's intricate oculomotor system is conceptually difficult for novice students to grasp. This is problematic given that this group of muscles represents one of the most common sites of clinical intervention in the treatment of ocular motility disorders and other eye disorders. This project was designed to develop a digital, interactive, three-dimensional (3D) model of the muscles and cranial nerves of the oculomotor system. Development of the 3D model utilized data from the Visible Human Project (VHP) dataset that was refined using multiple forms of 3D software. The model was then paired with a virtual user interface in order to create a novel 3D learning tool for the human oculomotor system. Development of the virtual eye model was done while attempting to adhere to the principles of cognitive load theory (CLT) and the reduction of extraneous load in particular. The detailed approach, digital tools employed, and the CLT guidelines are described herein. PMID:25228501

  11. Development of Three-Dimensional Completion of Complex Objects

    ERIC Educational Resources Information Center

    Soska, Kasey C.; Johnson, Scott P.

    2013-01-01

    Three-dimensional (3D) object completion, the ability to perceive the backs of objects seen from a single viewpoint, emerges at around 6 months of age. Yet, only relatively simple 3D objects have been used in assessing its development. This study examined infants' 3D object completion when presented with more complex stimuli. Infants…

  12. Three-dimensional cell to tissue development process

    NASA Technical Reports Server (NTRS)

    Goodwin, Thomas J. (Inventor); Parker, Clayton R. (Inventor)

    2008-01-01

    An improved three-dimensional cell to tissue development process using a specific time varying electromagnetic force, pulsed, square wave, with minimum fluid shear stress, freedom for 3-dimensional spatial orientation of the suspended particles and localization of particles with differing or similar sedimentation properties in a similar spatial region.

  13. [Study on the methods for establishing virtual three-dimensional models of cerebral arteries with the three-dimensional moulding software].

    PubMed

    Wei, Xin; Xie, Xiaodong; Wang, Chaohua

    2007-12-01

    This study was conducted to establish the methods of virtual three-dimensional cerebral arteries models by use of three-dimensional moulding software. The virtual models of the cerebral arteries were established using the three-dimensional moulding software of 3D Studio MAX R3 with 46 cases of normal cerebral DSA image as the original. The results showed there was similarity in appearance between the virtual cerebral arteries and DSA image. This is of benefit to understanding the vascular three-dimensional spatial relation in visual sense. Several models of different variant anatomy could be easily established on the copy files of the virtual cerebral arteries model. The virtual model could help learners to create and increase the three-dimensional space concept of arteries and aneurysms in clinical teaching. The results indicated that the virtual three-dimensional cerebral arteries models could display the three-dimensional spatial relation of the cerebral arterial system distinctly, and could serve as a morphologic foundation in the researches on vascular disease. PMID:18232470

  14. Sonocubic fine: new three-dimensional ultrasound software to the screening of congenital heart diseases.

    PubMed

    Araujo Júnior, Edward; Rocha, Luciane Alves da; Nardozza, Luciano Marcondes Machado

    2014-01-01

    Congenital heart disease is the most common fetal congenital malformations; however, the prenatal rate detection still is low. The two-dimensional echocardiography is the "gold standard" exam to screening and diagnosis of congenital heart disease during the prenatal; however, this exam is operator-depending and it is realized only in high risk pregnancies. Spatio-temporal image correlation is a three-dimensional ultrasound software that analyses the fetal heart and your connections in the multiplanar and rendering modes; however, spatio-temporal image correlation too is operator-depending and time-consuming. We presenting a new three-dimensional software named Sonocubic fine to the screening of congenital heart disease. This software applies intelligent navigation technology to spatio-temporal image correlation volume datasets to automatically generate nine fetal echocardiography standard views. Thus, this new software tends to be less operator-depending and time-consuming. PMID:25372918

  15. Three-Dimensional Path Planning Software-Assisted Transjugular Intrahepatic Portosystemic Shunt: A Technical Modification

    SciTech Connect

    Tsauo, Jiaywei Luo, Xuefeng; Ye, Linchao; Li, Xiao

    2015-06-15

    PurposeThis study was designed to report our results with a modified technique of three-dimensional (3D) path planning software assisted transjugular intrahepatic portosystemic shunt (TIPS).Methods3D path planning software was recently developed to facilitate TIPS creation by using two carbon dioxide portograms acquired at least 20° apart to generate a 3D path for overlay needle guidance. However, one shortcoming is that puncturing along the overlay would be technically impossible if the angle of the liver access set and the angle of the 3D path are not the same. To solve this problem, a prototype 3D path planning software was fitted with a utility to calculate the angle of the 3D path. Using this, we modified the angle of the liver access set accordingly during the procedure in ten patients.ResultsFailure for technical reasons occurred in three patients (unsuccessful wedged hepatic venography in two cases, software technical failure in one case). The procedure was successful in the remaining seven patients, and only one needle pass was required to obtain portal vein access in each case. The course of puncture was comparable to the 3D path in all patients. No procedure-related complication occurred following the procedures.ConclusionsAdjusting the angle of the liver access set to match the angle of the 3D path determined by the software appears to be a favorable modification to the technique of 3D path planning software assisted TIPS.

  16. Development of Three-Dimensional DRAGON Grid Technology

    NASA Technical Reports Server (NTRS)

    Zheng, Yao; Kiou, Meng-Sing; Civinskas, Kestutis C.

    1999-01-01

    For a typical three dimensional flow in a practical engineering device, the time spent in grid generation can take 70 percent of the total analysis effort, resulting in a serious bottleneck in the design/analysis cycle. The present research attempts to develop a procedure that can considerably reduce the grid generation effort. The DRAGON grid, as a hybrid grid, is created by means of a Direct Replacement of Arbitrary Grid Overlapping by Nonstructured grid. The DRAGON grid scheme is an adaptation to the Chimera thinking. The Chimera grid is a composite structured grid, composing a set of overlapped structured grids, which are independently generated and body-fitted. The grid is of high quality and amenable for efficient solution schemes. However, the interpolation used in the overlapped region between grids introduces error, especially when a sharp-gradient region is encountered. The DRAGON grid scheme is capable of completely eliminating the interpolation and preserving the conservation property. It maximizes the advantages of the Chimera scheme and adapts the strengths of the unstructured and while at the same time keeping its weaknesses minimal. In the present paper, we describe the progress towards extending the DRAGON grid technology into three dimensions. Essential and programming aspects of the extension, and new challenges for the three-dimensional cases, are addressed.

  17. Development of a three-dimensional turbulent duct flow analysis

    NASA Technical Reports Server (NTRS)

    Eiseman, P. R.; Levy, R.; Mcdonald, H.; Briley, W. R.

    1978-01-01

    A method for computing three-dimensional turbulent subsonic flow in curved ducts is described. An approximate set of governing equations is given for viscous flows which have a primary flow direction. The derivation is coordinate invariant, and the resulting equations are expressed in terms of tensors. General tube-like coordinates were developed for a general class of geometries applicable to many internal flow problems. The coordinates are then particularized to pipes having superelliptic cross sections whose shape can vary continuously between a circle and a near rectangle. The analysis is applied to a series of relevant aerodynamic problems including transition from nearly square to round pipes and flow through a pipe with an S-shaped bend.

  18. Three-Dimensional Root Phenotyping with a Novel Imaging and Software Platform1[C][W][OA

    PubMed Central

    Clark, Randy T.; MacCurdy, Robert B.; Jung, Janelle K.; Shaff, Jon E.; McCouch, Susan R.; Aneshansley, Daniel J.; Kochian, Leon V.

    2011-01-01

    A novel imaging and software platform was developed for the high-throughput phenotyping of three-dimensional root traits during seedling development. To demonstrate the platform’s capacity, plants of two rice (Oryza sativa) genotypes, Azucena and IR64, were grown in a transparent gellan gum system and imaged daily for 10 d. Rotational image sequences consisting of 40 two-dimensional images were captured using an optically corrected digital imaging system. Three-dimensional root reconstructions were generated and analyzed using a custom-designed software, RootReader3D. Using the automated and interactive capabilities of RootReader3D, five rice root types were classified and 27 phenotypic root traits were measured to characterize these two genotypes. Where possible, measurements from the three-dimensional platform were validated and were highly correlated with conventional two-dimensional measurements. When comparing gellan gum-grown plants with those grown under hydroponic and sand culture, significant differences were detected in morphological root traits (P < 0.05). This highly flexible platform provides the capacity to measure root traits with a high degree of spatial and temporal resolution and will facilitate novel investigations into the development of entire root systems or selected components of root systems. In combination with the extensive genetic resources that are now available, this platform will be a powerful resource to further explore the molecular and genetic determinants of root system architecture. PMID:21454799

  19. Advanced three-dimensional Eulerian hydrodynamic algorithm development

    SciTech Connect

    Rider, W.J.; Kothe, D.B.; Mosso, S.

    1998-11-01

    This is the final report of a three-year, Laboratory Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL). The purpose of this project is to investigate, implement, and evaluate algorithms that have high potential for improving the robustness, fidelity and accuracy of three-dimensional Eulerian hydrodynamic simulations. Eulerian computations are necessary to simulate a number of important physical phenomena ranging from the molding process for metal parts to nuclear weapons safety issues to astrophysical phenomena such as that associated with a Type 2 supernovae. A number of algorithmic issues were explored in the course of this research including interface/volume tracking, surface physics integration, high resolution integration techniques, multilevel iterative methods, multimaterial hydrodynamics and coupling radiation with hydrodynamics. This project combines core strengths of several Laboratory divisions. The project has high institutional benefit given the renewed emphasis on numerical simulations in Science-Based Stockpile Stewardship and the Accelerated Strategic Computing Initiative and LANL`s tactical goals related to high performance computing and simulation.

  20. Software system for three-dimensional volumetric reconstruction of histological sections: a case study for the snake chondrocranium.

    PubMed

    Hofstadler-Deiques, Clarice; Walter, Marcelo; Mierlo, Fábio; Ruduit, Rodrigo

    2005-10-01

    Volumetric digital computer-assisted reconstruction of histological sections is an attractive possibility for developmental studies. Commercial solutions are very expensive for many educational institutions. Therefore, we developed a software system for three-dimensional reconstruction of anatomical virtual models. The input data for the system are the digitized images from the histological samples of the chondrocranium of two crotalines, Bothrops jararaca and Crotalus durissus terrificus, and one colubrid, Philodryas olfersii, using a stereomicroscope connected to a digital camera. These images are then manually registered and segmented. We use computer graphics visualization algorithms such as marching cubes and ray casting to generate three-dimensional visualizations of the volumes. The results show that the digital reconstruction is as good as the manual reconstruction with the advantages of speed of reconstruction, accuracy, and flexibility to handle and study the volume. Compared with commercial options, our system has approximately the same features, and it is available free for the scientific community. PMID:16114067

  1. Three-dimensional rotation electron diffraction: software RED for automated data collection and data processing.

    PubMed

    Wan, Wei; Sun, Junliang; Su, Jie; Hovmöller, Sven; Zou, Xiaodong

    2013-12-01

    Implementation of a computer program package for automated collection and processing of rotation electron diffraction (RED) data is described. The software package contains two computer programs: RED data collection and RED data processing. The RED data collection program controls the transmission electron microscope and the camera. Electron beam tilts at a fine step (0.05-0.20°) are combined with goniometer tilts at a coarse step (2.0-3.0°) around a common tilt axis, which allows a fine relative tilt to be achieved between the electron beam and the crystal in a large tilt range. An electron diffraction (ED) frame is collected at each combination of beam tilt and goniometer tilt. The RED data processing program processes three-dimensional ED data generated by the RED data collection program or by other approaches. It includes shift correction of the ED frames, peak hunting for diffraction spots in individual ED frames and identification of these diffraction spots as reflections in three dimensions. Unit-cell parameters are determined from the positions of reflections in three-dimensional reciprocal space. All reflections are indexed, and finally a list with hkl indices and intensities is output. The data processing program also includes a visualizer to view and analyse three-dimensional reciprocal lattices reconstructed from the ED frames. Details of the implementation are described. Data collection and data processing with the software RED are demonstrated using a calcined zeolite sample, silicalite-1. The structure of the calcined silicalite-1, with 72 unique atoms, could be solved from the RED data by routine direct methods. PMID:24282334

  2. THREE-DIMENSIONAL RADIO AND X-RAY MODELING AND DATA ANALYSIS SOFTWARE: REVEALING FLARE COMPLEXITY

    SciTech Connect

    Nita, Gelu M.; Fleishman, Gregory D.; Gary, Dale E.; Kuznetsov, Alexey A.; Kontar, Eduard P.

    2015-02-01

    Many problems in solar physics require analysis of imaging data obtained in multiple wavelength domains with differing spatial resolution in a framework supplied by advanced three-dimensional (3D) physical models. To facilitate this goal, we have undertaken a major enhancement of our IDL-based simulation tools developed earlier for modeling microwave and X-ray emission. The enhanced software architecture allows the user to (1) import photospheric magnetic field maps and perform magnetic field extrapolations to generate 3D magnetic field models; (2) investigate the magnetic topology by interactively creating field lines and associated flux tubes; (3) populate the flux tubes with user-defined nonuniform thermal plasma and anisotropic, nonuniform, nonthermal electron distributions; (4) investigate the spatial and spectral properties of radio and X-ray emission calculated from the model; and (5) compare the model-derived images and spectra with observational data. The package integrates shared-object libraries containing fast gyrosynchrotron emission codes, IDL-based soft and hard X-ray codes, and potential and linear force-free field extrapolation routines. The package accepts user-defined radiation and magnetic field extrapolation plug-ins. We use this tool to analyze a relatively simple single-loop flare and use the model to constrain the magnetic 3D structure and spatial distribution of the fast electrons inside this loop. We iteratively compute multi-frequency microwave and multi-energy X-ray images from realistic magnetic flux tubes obtained from pre-flare extrapolations, and compare them with imaging data obtained by SDO, NoRH, and RHESSI. We use this event to illustrate the tool's use for the general interpretation of solar flares to address disparate problems in solar physics.

  3. Three-dimensional Radio and X-Ray Modeling and Data Analysis Software: Revealing Flare Complexity

    NASA Astrophysics Data System (ADS)

    Nita, Gelu M.; Fleishman, Gregory D.; Kuznetsov, Alexey A.; Kontar, Eduard P.; Gary, Dale E.

    2015-02-01

    Many problems in solar physics require analysis of imaging data obtained in multiple wavelength domains with differing spatial resolution in a framework supplied by advanced three-dimensional (3D) physical models. To facilitate this goal, we have undertaken a major enhancement of our IDL-based simulation tools developed earlier for modeling microwave and X-ray emission. The enhanced software architecture allows the user to (1) import photospheric magnetic field maps and perform magnetic field extrapolations to generate 3D magnetic field models; (2) investigate the magnetic topology by interactively creating field lines and associated flux tubes; (3) populate the flux tubes with user-defined nonuniform thermal plasma and anisotropic, nonuniform, nonthermal electron distributions; (4) investigate the spatial and spectral properties of radio and X-ray emission calculated from the model; and (5) compare the model-derived images and spectra with observational data. The package integrates shared-object libraries containing fast gyrosynchrotron emission codes, IDL-based soft and hard X-ray codes, and potential and linear force-free field extrapolation routines. The package accepts user-defined radiation and magnetic field extrapolation plug-ins. We use this tool to analyze a relatively simple single-loop flare and use the model to constrain the magnetic 3D structure and spatial distribution of the fast electrons inside this loop. We iteratively compute multi-frequency microwave and multi-energy X-ray images from realistic magnetic flux tubes obtained from pre-flare extrapolations, and compare them with imaging data obtained by SDO, NoRH, and RHESSI. We use this event to illustrate the tool's use for the general interpretation of solar flares to address disparate problems in solar physics.

  4. Development of a Three-Dimensional Hand Model Using Three-Dimensional Stereophotogrammetry: Assessment of Image Reproducibility

    PubMed Central

    Hoevenaren, Inge A.; Meulstee, J.; Krikken, E.; Bergé, S. J.; Ulrich, D. J. O.; Maal, Thomas J. J.

    2015-01-01

    Purpose Using three-dimensional (3D) stereophotogrammetry precise images and reconstructions of the human body can be produced. Over the last few years, this technique is mainly being developed in the field of maxillofacial reconstructive surgery, creating fusion images with computed tomography (CT) data for precise planning and prediction of treatment outcome. Though, in hand surgery 3D stereophotogrammetry is not yet being used in clinical settings. Methods A total of 34 three-dimensional hand photographs were analyzed to investigate the reproducibility. For every individual, 3D photographs were captured at two different time points (baseline T0 and one week later T1). Using two different registration methods, the reproducibility of the methods was analyzed. Furthermore, the differences between 3D photos of men and women were compared in a distance map as a first clinical pilot testing our registration method. Results The absolute mean registration error for the complete hand was 1.46 mm. This reduced to an error of 0.56 mm isolating the region to the palm of the hand. When comparing hands of both sexes, it was seen that the male hand was larger (broader base and longer fingers) than the female hand. Conclusions This study shows that 3D stereophotogrammetry can produce reproducible images of the hand without harmful side effects for the patient, so proving to be a reliable method for soft tissue analysis. Its potential use in everyday practice of hand surgery needs to be further explored. PMID:26366860

  5. Development of a three-dimensional supersonic inlet flow analysis

    NASA Technical Reports Server (NTRS)

    Buggeln, R. C.; Mcdonald, H.; Levy, R.; Kreskovsky, J. P.

    1980-01-01

    A method for computing three dimensional flow in supersonic inlets is described. An approximate set of governing equations is given for viscous flows which have a primary flow direction. The governing equations are written in general orthogonal coordinates. These equations are modified in the subsonic region of the flow to prevent the phenomenon of branching. Results are presented for the two sample cases: a Mach number equals 2.5 flow in a square duct, and a Mach number equals 3.0 flow in a research jet engine inlet. In the latter case the computed results are compared with the experimental data. A users' manual is included.

  6. Development of a Three-Dimensional PSE Code for Compressible Flows: Stability of Three-Dimensional Compressible Boundary Layers

    NASA Technical Reports Server (NTRS)

    Balakumar, P.; Jeyasingham, Samarasingham

    1999-01-01

    A program is developed to investigate the linear stability of three-dimensional compressible boundary layer flows over bodies of revolutions. The problem is formulated as a two dimensional (2D) eigenvalue problem incorporating the meanflow variations in the normal and azimuthal directions. Normal mode solutions are sought in the whole plane rather than in a line normal to the wall as is done in the classical one dimensional (1D) stability theory. The stability characteristics of a supersonic boundary layer over a sharp cone with 50 half-angle at 2 degrees angle of attack is investigated. The 1D eigenvalue computations showed that the most amplified disturbances occur around x(sub 2) = 90 degrees and the azimuthal mode number for the most amplified disturbances range between m = -30 to -40. The frequencies of the most amplified waves are smaller in the middle region where the crossflow dominates the instability than the most amplified frequencies near the windward and leeward planes. The 2D eigenvalue computations showed that due to the variations in the azimuthal direction, the eigenmodes are clustered into isolated confined regions. For some eigenvalues, the eigenfunctions are clustered in two regions. Due to the nonparallel effect in the azimuthal direction, the eigenmodes are clustered into isolated confined regions. For some eigenvalues, the eigenfunctions are clustered in two regions. Due to the nonparallel effect in the azimuthal direction, the most amplified disturbances are shifted to 120 degrees compared to 90 degrees for the parallel theory. It is also observed that the nonparallel amplification rates are smaller than that is obtained from the parallel theory.

  7. Accuracy of open-source software segmentation and paper-based printed three-dimensional models.

    PubMed

    Szymor, Piotr; Kozakiewicz, Marcin; Olszewski, Raphael

    2016-02-01

    In this study, we aimed to verify the accuracy of models created with the help of open-source Slicer 3.6.3 software (Surgical Planning Lab, Harvard Medical School, Harvard University, Boston, MA, USA) and the Mcor Matrix 300 paper-based 3D printer. Our study focused on the accuracy of recreating the walls of the right orbit of a cadaveric skull. Cone beam computed tomography (CBCT) of the skull was performed (0.25-mm pixel size, 0.5-mm slice thickness). Acquired DICOM data were imported into Slicer 3.6.3 software, where segmentation was performed. A virtual model was created and saved as an .STL file and imported into Netfabb Studio professional 4.9.5 software. Three different virtual models were created by cutting the original file along three different planes (coronal, sagittal, and axial). All models were printed with a Selective Deposition Lamination Technology Matrix 300 3D printer using 80 gsm A4 paper. The models were printed so that their cutting plane was parallel to the paper sheets creating the model. Each model (coronal, sagittal, and axial) consisted of three separate parts (∼200 sheets of paper each) that were glued together to form a final model. The skull and created models were scanned with a three-dimensional (3D) optical scanner (Breuckmann smart SCAN) and were saved as .STL files. Comparisons of the orbital walls of the skull, the virtual model, and each of the three paper models were carried out with GOM Inspect 7.5SR1 software. Deviations measured between the models analysed were presented in the form of a colour-labelled map and covered with an evenly distributed network of points automatically generated by the software. An average of 804.43 ± 19.39 points for each measurement was created. Differences measured in each point were exported as a .csv file. The results were statistically analysed using Statistica 10, with statistical significance set at p < 0.05. The average number of points created on models for each measurement was 804

  8. The development of a three-dimensional partially elliptic flow computer program for combustor research

    NASA Technical Reports Server (NTRS)

    Pan, Y. S.

    1978-01-01

    A three dimensional, partially elliptic, computer program was developed. Without requiring three dimensional computer storage locations for all flow variables, the partially elliptic program is capable of predicting three dimensional combustor flow fields with large downstream effects. The program requires only slight increase of computer storage over the parabolic flow program from which it was developed. A finite difference formulation for a three dimensional, fully elliptic, turbulent, reacting, flow field was derived. Because of the negligible diffusion effects in the main flow direction in a supersonic combustor, the set of finite-difference equations can be reduced to a partially elliptic form. Only the pressure field was governed by an elliptic equation and requires three dimensional storage; all other dependent variables are governed by parabolic equations. A numerical procedure which combines a marching integration scheme with an iterative scheme for solving the elliptic pressure was adopted.

  9. Three-Dimensional Electron Microscopy Simulation with the CASINO Monte Carlo Software

    PubMed Central

    Demers, Hendrix; Poirier-Demers, Nicolas; Couture, Alexandre Réal; Joly, Dany; Guilmain, Marc; de Jonge, Niels; Drouin, Dominique

    2011-01-01

    Monte Carlo softwares are widely used to understand the capabilities of electron microscopes. To study more realistic applications with complex samples, 3D Monte Carlo softwares are needed. In this paper, the development of the 3D version of CASINO is presented. The software feature a graphical user interface, an efficient (in relation to simulation time and memory use) 3D simulation model, accurate physic models for electron microscopy applications, and it is available freely to the scientific community at this website: www.gel.usherbrooke.ca/casino/index.html. It can be used to model backscattered, secondary, and transmitted electron signals as well as absorbed energy. The software features like scan points and shot noise allow the simulation and study of realistic experimental conditions. This software has an improved energy range for scanning electron microscopy and scanning transmission electron microscopy applications. PMID:21769885

  10. Developments and trends in three-dimensional mesh generation

    NASA Technical Reports Server (NTRS)

    Baker, Timothy J.

    1989-01-01

    An intense research effort over the last few years has produced several competing and apparently diverse methods for generating meshes. Recent progress is reviewed and the central themes are emphasized which form a solid foundation for future developments in mesh generation.

  11. Development of an Interactive Anatomical Three-Dimensional Eye Model

    ERIC Educational Resources Information Center

    Allen, Lauren K.; Bhattacharyya, Siddhartha; Wilson, Timothy D.

    2015-01-01

    The discrete anatomy of the eye's intricate oculomotor system is conceptually difficult for novice students to grasp. This is problematic given that this group of muscles represents one of the most common sites of clinical intervention in the treatment of ocular motility disorders and other eye disorders. This project was designed to develop a…

  12. Development of three-dimensional radiotherapy techniques in breast cancer

    NASA Astrophysics Data System (ADS)

    Coles, Charlotte E.

    Radiotherapy following conservation surgery decreases local relapse and death from breast cancer. Currently, the challenge is to minimise the morbidity caused by this treatment without losing efficacy. Despite many advances in radiation techniques in other sites of the body, the majority of breast cancer patients are still planned and treated using 2-dimensional simple radiotherapy techniques. In addition, breast irradiation currently consumes 30% of the UK's radiotherapy workload. Therefore, any change to more complex treatment should be of proven benefit. The primary objective of this research is to develop and evaluate novel radiotherapy techniques to decrease irradiation of normal structures and improve localisation of the tumour bed. I have developed a forward-planned intensity modulated (IMRT) breast radiotherapy technique, which has shown improved dosimetry results compared to standard breast radiotherapy. Subsequently, I have developed and implemented a phase III randomised controlled breast IMRT trial. This National Cancer Research Network adopted trial will answer an important question regarding the clinical benefit of breast IMRT. It will provide DNA samples linked with high quality clinical outcome data, for a national translational radiogenomics study investigating variation in normal tissue toxicity. Thus, patients with significant late normal tissue side effects despite good dose homogeneity will provide the best model for finding differences due to underlying genetics. I evaluated a novel technique using high definition free-hand 3-dimensional (3D) ultrasound in a phantom study, and the results suggested that this is an accurate and reproducible method for tumour bed localisation. I then compared recognised methods of tumour bed localisation with the 3D ultrasound method in a clinical study. The 3D ultrasound technique appeared to accurately represent the shape and spatial position of the tumour cavity. This tumour bed localisation research

  13. Three-dimensional developing flow model for photocatalytic monolith reactors

    SciTech Connect

    Hossain, Md.M.; Raupp, G.B.; Hay, S.O.; Obee, T.N.

    1999-06-01

    A first-principles mathematical model describes performance of a titania-coated honeycomb monolith photocatalytic oxidation (PCO) reactor for air purification. The single-channel, 3-D convection-diffusion-reaction model assumes steady-state operation, negligible axial dispersion, and negligible homogeneous reaction. The reactor model accounts rigorously for entrance effects arising from the developing fluid-flow field and uses a previously developed first-principles radiation-field submodel for the UV flux profile down the monolith length. The model requires specification of an intrinsic photocatalytic reaction rate dependent on local UV light intensity and local reactant concentration, and uses reaction-rate expressions and kinetic parameters determined independently using a flat-plate reactor. Model predictions matched experimental pilot-scale formaldehyde conversion measurements for a range of inlet formaldehyde concentrations, air humidity levels, monolith lengths, and for various monolith/lamp-bank configurations. This agreement was realized without benefit of any adjustable photocatalytic reactor model parameters, radiation-field submodel parameters, or kinetic submodel parameters. The model tends to systematically overpredict toluene conversion data by about 33%, which falls within the accepted limits of experimental kinetic parameter accuracy. With further validation, the model could be used in PCO reactor design and to develop quantitative energy utilization metrics.

  14. IBSIMU: a three-dimensional simulation software for charged particle optics.

    PubMed

    Kalvas, T; Tarvainen, O; Ropponen, T; Steczkiewicz, O; Arje, J; Clark, H

    2010-02-01

    A general-purpose three-dimensional (3D) simulation code IBSIMU for charged particle optics with space charge is under development at JYFL. The code was originally developed for designing a slit-beam plasma extraction and nanosecond scale chopping for pulsed neutron generator, but has been developed further and has been used for many applications. The code features a nonlinear FDM Poisson's equation solver based on fast stabilized biconjugate gradient method with ILU0 preconditioner for solving electrostatic fields. A generally accepted nonlinear plasma model is used for plasma extraction. Magnetic fields can be imported to the simulations from other programs. The particle trajectories are solved using adaptive Runge-Kutta method. Steady-state and time-dependent problems can be modeled in cylindrical coordinates, two-dimensional (slit) geometry, or full 3D. The code is used via C++ programming language for versatility but it features an interactive easy-to-use postprocessing tool for diagnosing fields and particle trajectories. The open source distribution and public documentation make the code well suited for scientific use. IBSIMU has been used for modeling the 14 GHz ECR ion source extraction and for designing a four-electrode extraction for a 2.45 GHz microwave ion source at Jyväskylä. A grid extraction has also been designed for producing large uniform beam for creating conditions similar to solar wind. The code has also been used to design a H(-) extraction with electron dumping for the Cyclotron Institute of Texas A&M University. PMID:20192443

  15. Hekate: Software Suite for the Mass Spectrometric Analysis and Three-Dimensional Visualization of Cross-Linked Protein Samples

    PubMed Central

    2013-01-01

    Chemical cross-linking of proteins combined with mass spectrometry provides an attractive and novel method for the analysis of native protein structures and protein complexes. Analysis of the data however is complex. Only a small number of cross-linked peptides are produced during sample preparation and must be identified against a background of more abundant native peptides. To facilitate the search and identification of cross-linked peptides, we have developed a novel software suite, named Hekate. Hekate is a suite of tools that address the challenges involved in analyzing protein cross-linking experiments when combined with mass spectrometry. The software is an integrated pipeline for the automation of the data analysis workflow and provides a novel scoring system based on principles of linear peptide analysis. In addition, it provides a tool for the visualization of identified cross-links using three-dimensional models, which is particularly useful when combining chemical cross-linking with other structural techniques. Hekate was validated by the comparative analysis of cytochrome c (bovine heart) against previously reported data.1 Further validation was carried out on known structural elements of DNA polymerase III, the catalytic α-subunit of the Escherichia coli DNA replisome along with new insight into the previously uncharacterized C-terminal domain of the protein. PMID:24010795

  16. Development of a three dimensional scanning touch probe with high precision and low contact force

    NASA Astrophysics Data System (ADS)

    Chu, Chih-Liang; Ke, Jhih-Sian; Chen, Hung-Chi

    2013-01-01

    This study aims to develop a three dimensional scanning touch probe with high precision and low contact force. The overall design has two parts, mechanism design and optical path design. The mechanism design contains three parts, Zaxis system, XY-axis system, and probe mechanism. The Z-axis system applies the characteristic of the thin sheet spring to move vertically. In the design of XY-axis system, a micro-beam is employed, through which length, width, thickness of the micro-beam and corresponding dimensions of the leaf spring are designed according to the selected contact force. The freedom degree is limited to three. And the center of the mechanism is equipped with a stylus to inhibit displacement of the Z-axis. The contact between the probe and the workpiece only leads to change in the angles of Xand Y-axes, achieving the feature of 2-degree freedom. To enable rapid change for the probes, this study designs a probe mechanism, reliability of which is analyzed and validated with ANSYS software, so that the design of 3-degree freedom mechanism is completed. The sensor has a laser diode to coordinate with Position Sensor Detector (PSD) which works with the optical path designed to measure placement of Z-axis and angle placement of XY-axis. By validation through an experiment, the three dimensional scanning touch probe developed by this study has a measuring range of +/-1mm×+/-1mm×1mm, and unidirectional repeatability of 0.6um.

  17. Three-dimensional/two-dimensional multiplanar stereotactic planning system: hardware and software configuration

    NASA Astrophysics Data System (ADS)

    Zamorano, Lucia J.; Dujovny, Manuel; Ausman, James I.

    1990-01-01

    "Real time" surgical treatment planning utilizing multimodality imaging (CT, MRI, DA) has been developed to provide the neurosurgeon with 2D multiplanar and 3D views of a patient's lesion for stereotactic planning. Both diagnostic and therapeutic stereotactic procedures have been implemented utilizing workstation (SUN 1/10) and specially developed software and hardware (developed in collaboration with TOMO Medical Imaging Technology, Southfield, MI). This provides complete 3D and 2D free-tilt views as part of the system instrumentation. The 2D Multiplanar includes reformatted sagittal, coronal, paraaxial and free tilt oblique vectors at any arbitrary plane of the patient's lesion. The 3D includes features for extracting a view of the target volume localized by a process including steps of automatic segmentation, thresholding, and/or boundary detection with 3D display of the volumes of interest. The system also includes the capability of interactive playback of reconstructed 3D movies, which can be viewed at any hospital network having compatible software on strategical locations or at remote sites through data transmission and record documentation by image printers. Both 2D and 3D menus include real time stereotactic coordinate measurements and trajectory definition capabilities as well as statistical functions for computing distances, angles, areas, and volumes. A combined interactive 3D-2D multiplanar menu allows simultaneous display of selected trajectory, final optimization, and multiformat 2D display of free-tilt reformatted images perpendicular to selected trajectory of the entire target volume.

  18. Photogrammetry of the three-dimensional shape and texture of a nanoscale particle using scanning electron microscopy and free software.

    PubMed

    Gontard, Lionel C; Schierholz, Roland; Yu, Shicheng; Cintas, Jesús; Dunin-Borkowski, Rafal E

    2016-10-01

    We apply photogrammetry in a scanning electron microscope (SEM) to study the three-dimensional shape and surface texture of a nanoscale LiTi2(PO4)3 particle. We highlight the fact that the technique can be applied non-invasively in any SEM using free software (freeware) and does not require special sample preparation. Three-dimensional information is obtained in the form of a surface mesh, with the texture of the sample stored as a separate two-dimensional image (referred to as a UV Map). The mesh can be used to measure parameters such as surface area, volume, moment of inertia and center of mass, while the UV map can be used to study the surface texture using conventional image processing techniques. We also illustrate the use of 3D printing to visualize the reconstructed model. PMID:27449277

  19. Three-dimensional graphics simulator for testing mine machine computer-controlled algorithms -- phase 1 development

    SciTech Connect

    Ambrose, D.H. )

    1993-01-01

    Using three-dimensional (3-D) graphics computing to evaluate new technologies for computer-assisted mining systems illustrates how these visual techniques can redefine the way researchers look at raw scientific data. The US Bureau of Mines is using 3-D graphics computing to obtain cheaply, easily, and quickly information about the operation and design of current and proposed mechanical coal and metal-nonmetal mining systems. Bureau engineers developed a graphics simulator for a continuous miner that enables a realistic test for experimental software that controls the functions of a machine. Some of the specific simulated functions of the continuous miner are machine motion, appendage motion, machine position, and machine sensors. The simulator uses data files generated in the laboratory or mine using a computer-assisted mining machine. The data file contains information from a laser-based guidance system and a data acquisition system that records all control commands given to a computer-assisted mining machine. This report documents the first phase in developing the simulator and discusses simulator requirements, features of the initial simulator, and several examples of its application. During this endeavor, Bureau engineers discovered and appreciated the simulator's potential to assist their investigations of machine controls and navigation systems.

  20. Artistic expression in the development of new technology for three dimensional imaging

    NASA Astrophysics Data System (ADS)

    Oliveira, Sandra; Richardson, Martin; Azevedo, Isabel

    2011-02-01

    The medium of holography offers many new creative possibilities for the development of kinetic art. In the search of new forms of image display we examine new methods of capturing Three Dimensional animated images. Expression in new forms of visualisation leads to new methods for exploration auto-stereoscopic displays, three-dimensional imaging and holography. Artists have long combined cameras together to explore the human body as form and space and this paper sets out the potential of some of these techniques and in particular the technical potential of the use of multicamera capture techniques. Artists such as Tim Macmillan1 (2010) and Dayton Taylor2 (1997) use multi-lens cameras to create the illusion of capturing space and time for different effects, such as frozen moment, live action and slow motion (often seen as a cinemagraphic effect). However, their results are two-dimensional images made with a two-dimensional image capture system. Previous research on the interaction between art and technology has been based on twodimensional video art. This paper outlines a method of three-dimensional video capture to explore three-dimensional space and the human body. The stereoscopic specialist Ray Zone3 has written about the evolution of 3-D technology and 3-D film. Zone examines the development of these 3-D techniques and demonstrates the connection between two fields. This research extends our knowledge of Three Dimensional moving image as an art form. In the new art world, Holography has become a method increasingly used to develop kinetic art. In the search of new forms of display and image capture, we examine new techniques such as 3-D, including auto-stereoscopic display, three-dimensional imaging and holography.

  1. Development of a three-dimensional time-dependent flow field model

    NASA Technical Reports Server (NTRS)

    Farmer, R. C.; Waldrop, W. R.; Pitts, F. H.; Shah, K. R.

    1975-01-01

    A three-dimensional, time-dependent mathematical model to represent Mobile Bay was developed. Computer programs were developed which numerically solve the appropriate conservation equations for predicting bay and estuary flow fields. The model is useful for analyzing the dispersion of sea water into fresh water and the transport of sediment, and for relating field and physical model data.

  2. Development Report on the Idaho National Laboratory Sitewide Three-Dimensional Aquifer Model

    SciTech Connect

    Thomas R. Wood; Catherine M. Helm-Clark; Hai Huang; Swen Magnuson; Travis McLing; Brennon Orr; Michael J. Rohe; Mitchell A. Plummer; Robert Podgorney; Erik Whitmore; Michael S. Roddy

    2007-09-01

    A sub-regional scale, three-dimensional flow model of the Snake River Plain Aquifer was developed to support remediation decisions for Waste Area Group 10, Operable Unit 10 08 at the Idaho National Laboratory (INL) Site. This model has been calibrated primarily to water levels and secondarily to groundwater velocities interpreted from stable isotope disequilibrium studies and the movement of anthropogenic contaminants in the aquifer from facilities at the INL. The three-dimensional flow model described in this report is one step in the process of constructing a fully three-dimensional groundwater flow and contaminant transport model as prescribed in the Idaho National Engineering and Environmental Laboratory Operable Unit 10-08 Sitewide Groundwater Model Work Plan. An updated three-dimensional hydrogeologic conceptual model is presented along with the geologic basis for the conceptual model. Sediment-dominated three-dimensional volumes were used to represent the geology and constrain groundwater flow as part of the conceptual model. Hydrological, geochemical, and geological data were summarized and evaluated to infer aquifer behavior. A primary observation from development and evaluation of the conceptual model was that relative to flow on a regional scale, the aquifer can be treated with steady-state conditions. Boundary conditions developed for the three-dimensional flow model are presented along with inverse simulations that estimate parameterization of hydraulic conductivity. Inverse simulations were performed using the pilot-point method to estimate permeability distributions. Thermal modeling at the regional aquifer scale and at the sub-regional scale using the inverted permeabilities is presented to corroborate the results of the flow model. The results from the flow model show good agreement with simulated and observed water levels almost always within 1 meter. Simulated velocities show generally good agreement with some discrepancies in an interpreted low

  3. Development of a three-dimensional surface imaging system for melanocytic skin lesion evaluation

    NASA Astrophysics Data System (ADS)

    Tosca, Androniki; Kokolakis, Athanasios; Lasithiotakis, Konstantinos; Zacharopoulos, Athanasios; Zabulis, Xenophon; Marnelakis, Ioannis; Ripoll, Jorge; Stephanidis, Constantine

    2013-01-01

    Even though surface morphology is always taken into account when assessing clinically pigmented skin lesions, it is not captured by most modern imaging systems using digital imaging. Our aim is to develop a novel three-dimensional (3D) imaging technique to record detailed information of the surface anatomy of melanocytic lesions that will enable improved classification through digital imaging. The apparatus consists of three high-resolution cameras, a light source, and accompanying software. Volume measurements of specific phantoms using volumetric tubes render slightly lower values than those obtained by our 3D imaging system (mean%±SD, 3.8%±0.98, P<0.05). To examine the reproducibility of the method, sequential imaging of melanocytic lesions is carried out. The mean%±SD differences of area, major axis length, volume, and maximum height are 2.1%±1.1, 0.9%±0.8, 3.8%±2.9, and 2.5%±3.5, respectively. Thirty melanocytic lesions are assessed, including common and dysplastic nevi and melanomas. There is a significant difference between nevi and melanomas in terms of variance in height and boundary asymmetry (P<0.001). Moreover, dysplastic nevi have significantly higher variances in pigment density values than common nevi (P<0.001). Preliminary data suggest that our instrument has great potential in the evaluation of the melanocytic lesions. However, these findings should be confirmed in larger-scale studies.

  4. Students' Development of Three-Dimensional Visualization in the Geometer's Sketchpad Environment.

    ERIC Educational Resources Information Center

    McClintock, Edwin; Jiang, Zhonghong; July, Raquel

    This paper reports on a series of four studies carried out over a period of four years. These related studies were clinical and qualitative as they investigated middle and high school students' development of geometric thought, particularly as it related to three- dimensional visualization. The studies were carried out in the constructivist…

  5. Development of a percentile based three-dimensional model of the buttocks in computer system

    NASA Astrophysics Data System (ADS)

    Wang, Lijing; He, Xueli; Li, Hongpeng

    2016-04-01

    There are diverse products related to human buttocks, which need to be designed, manufactured and evaluated with 3D buttock model. The 3D buttock model used in present research field is just simple approximate model similar to human buttocks. The 3D buttock percentile model is highly desired in the ergonomics design and evaluation for these products. So far, there is no research on the percentile sizing system of human 3D buttock model. So the purpose of this paper is to develop a new method for building three-dimensional buttock percentile model in computer system. After scanning the 3D shape of buttocks, the cloud data of 3D points is imported into the reverse engineering software (Geomagic) for the reconstructing of the buttock surface model. Five characteristic dimensions of the buttock are measured through mark-points after models being imported into engineering software CATIA. A series of space points are obtained by the intersecting of the cutting slices and 3D buttock surface model, and then are ordered based on the sequence number of the horizontal and vertical slices. The 1st, 5th, 50th, 95th, 99th percentile values of the five dimensions and the spatial coordinate values of the space points are obtained, and used to reconstruct percentile buttock models. This research proposes a establishing method of percentile sizing system of buttock 3D model based on the percentile values of the ischial tuberosities diameter, the distances from margin to ischial tuberosity and the space coordinates value of coordinate points, for establishing the Nth percentile 3D buttock model and every special buttock types model. The proposed method also serves as a useful guidance for the other 3D percentile models establishment for other part in human body with characteristic points.

  6. Development of a percentile based three-dimensional model of the buttocks in computer system

    NASA Astrophysics Data System (ADS)

    Wang, Lijing; He, Xueli; Li, Hongpeng

    2016-05-01

    There are diverse products related to human buttocks, which need to be designed, manufactured and evaluated with 3D buttock model. The 3D buttock model used in present research field is just simple approximate model similar to human buttocks. The 3D buttock percentile model is highly desired in the ergonomics design and evaluation for these products. So far, there is no research on the percentile sizing system of human 3D buttock model. So the purpose of this paper is to develop a new method for building three-dimensional buttock percentile model in computer system. After scanning the 3D shape of buttocks, the cloud data of 3D points is imported into the reverse engineering software (Geomagic) for the reconstructing of the buttock surface model. Five characteristic dimensions of the buttock are measured through mark-points after models being imported into engineering software CATIA. A series of space points are obtained by the intersecting of the cutting slices and 3D buttock surface model, and then are ordered based on the sequence number of the horizontal and vertical slices. The 1st, 5th, 50th, 95th, 99th percentile values of the five dimensions and the spatial coordinate values of the space points are obtained, and used to reconstruct percentile buttock models. This research proposes a establishing method of percentile sizing system of buttock 3D model based on the percentile values of the ischial tuberosities diameter, the distances from margin to ischial tuberosity and the space coordinates value of coordinate points, for establishing the Nth percentile 3D buttock model and every special buttock types model. The proposed method also serves as a useful guidance for the other 3D percentile models establishment for other part in human body with characteristic points.

  7. Real Stereopsis Test Using a Three-Dimensional Display with Tridef Software

    PubMed Central

    Han, Jinu; Han, So Young; Lee, Seung Koo; Lee, Jong Bok

    2014-01-01

    Purpose To investigate horizontal image disparity in three-dimensional (3-D) perception using 3-D animations in normal control patients and patients with intermittent exotropia, anisometropic amblyopia, and partially accommodative esotropia. Materials and Methods A total of 133 subjects were included. Stereopsis was measured using the Titmus Stereo test (Stereo Optical Inc., Chicago, IL, USA) and a 3-D stereopsis test with a 15 inch 3-D display laptop, adjusting 3-D parameters of 0 mm horizontal disparity to 15 mm horizontal disparity. Results When compared with normal controls, the average threshold of the 3-D stereopsis test was significantly reduced for esotropia patients (p<0.001) and for anisometric amblyopia patients (p<0.001), compared to normal controls. No significant difference was observed between normal controls and intermittent exotropia patients (p=0.082). The 3-D stereopsis test was correlated with the Titmus Stereo test (Spearman's rho=0.690, p<0.001). Mean difference in stereoacuity was 1.323 log seconds of arc (95% limits of agreement: 0.486 to 2.112), and 125 (92.5%) patients were within the limits of agreement. Conclusion This study demonstrated that a 3-D stereopsis test with animation is highly correlated with the Titmus Stereo test; nevertheless, 3-D stereopsis with animations generates more image disparities than the conventional Titmus Stereo test. The 3-D stereopsis test is highly predictive for estimating real stereopsis in a 3-D movie theater. PMID:25323907

  8. Development of ultrasonic data recording system for three dimensionally curved components

    SciTech Connect

    Uchida, K.

    1995-08-01

    Semi-automatic man-machine system for ultrasonic inspection of three dimensionally curved components such as water pump impeller blade made of steel casting was investigated. In respect to the curved components inspection, results of the detected flaw data are very complicated because of surface configuration varies very much during the probe scanning. Therefore, much more reliable ultrasonic inspection technique and equipments have been required which are available for random probe scanning on a three dimensional curved surface in the field. The developed ultrasonic system is constructed of portable and handy manual scanning mechanism and ultrasonic data acquisition and processor. One of the feature of this system is that the precise defect location and defect sizing are conducted considering the three dimensional configuration of the components. In this paper, a measuring method of ultrasonic beam direction on curved surface was proposed, which is calculated by the collected search unit position data, and the effect of this method was verified. The position of reflectors were exactly decided according to the beam path length of detected echo signal, the probe refraction angle and the search unit position data. And as a results, the calculated reflector positions were automatically processed and analyzed for defect location and sizing, and defects image were three dimensionally displayed on CRT.

  9. Development and analysis of a photon-counting three-dimensional imaging laser detection and ranging (LADAR) system.

    PubMed

    Oh, Min Seok; Kong, Hong Jin; Kim, Tae Hoon; Jo, Sung Eun; Kim, Byung Wook; Park, Dong Jo

    2011-05-01

    In this paper, a photon-counting three-dimensional imaging laser detection and ranging (LADAR) system that uses a Geiger-mode avalanche photodiode (GAPD) of relatively short dead time (45 ns) is described. A passively Q-switched microchip laser is used as a laser source and a compact peripheral component interconnect system, which includes a time-to-digital converter (TDC), is set up for fast signal processing. The combination of a GAPD with short dead time and a TDC with a multistop function enables the system to operate in a single-hit or a multihit mode during the acquisition of time-of-flight data. The software for the three-dimensional visualization and an algorithm for the removal of noise are developed. For the photon-counting LADAR system, we establish a theoretical model of target-detection and false-alarm probabilities in both the single-hit and multihit modes with a Poisson statistic; this model provides the prediction of the performance of the system and a technique for the acquisition of a noise image with a GAPD. Both the noise image and the three-dimensional image of a scene acquired by the photon-counting LADAR system during the day are presented. PMID:21532685

  10. Three-dimensional desirability spaces for quality-by-design-based HPLC development.

    PubMed

    Mokhtar, Hatem I; Abdel-Salam, Randa A; Hadad, Ghada M

    2015-04-01

    In this study, three-dimensional desirability spaces were introduced as a graphical representation method of design space. This was illustrated in the context of application of quality-by-design concepts on development of a stability indicating gradient reversed-phase high-performance liquid chromatography method for the determination of vinpocetine and α-tocopheryl acetate in a capsule dosage form. A mechanistic retention model to optimize gradient time, initial organic solvent concentration and ternary solvent ratio was constructed for each compound from six experimental runs. Then, desirability function of each optimized criterion and subsequently the global desirability function were calculated throughout the knowledge space. The three-dimensional desirability spaces were plotted as zones exceeding a threshold value of desirability index in space defined by the three optimized method parameters. Probabilistic mapping of desirability index aided selection of design space within the potential desirability subspaces. Three-dimensional desirability spaces offered better visualization and potential design spaces for the method as a function of three method parameters with ability to assign priorities to this critical quality as compared with the corresponding resolution spaces. PMID:25002683

  11. BAGC.m: Three dimensional gravity modeling software with an application in Southern Death Valley, CA

    NASA Astrophysics Data System (ADS)

    Eslick, Brian Eugene

    Basin Anomaly Gravity Calculator (BAGC.m) is a 3D interactive gravity modeling package designed to create, edit, and calculate the gravitational attraction of basin models entirely within the MATLAB(TM) environment. Gravity anomalies are calculated using the Rectangular Prism Method (Bott, 1960; Kane, 1962; and Plouff, 1966) which subdivides earth models into regularly spaced rectangular prisms. This approach requires large 3D matrices to store most realistic earth models. The process of model editing is simplified by storing basins as 2D gridded files which define the depth to the boundary between basement rock and sedimentary fill for each model cell. In order to minimize computation time, BAGC.m calculates and stores the gravitational attraction of each cell so that when the model is edited only those cells that change need to be recalculated. The performance of BAGC.m was tested by comparing the gravity anomaly produced by a modeled sphere of radius 4.5 km at a depth of 4.5 km with its analytical solution. The tests indicate that BAGC.m reproduces the analytical solution with an error of 0.6% for a sample spacing of 60 m which corresponds to 7.07x10-6% of the volume of the sphere. BAGC.m was used to calculate the gravitational attraction of a regional basin depth model of Death Valley developed by Blakely and Ponce (2001). Results were compared to a new high precision gravity data set and indicate that the structures within the Southern Death Valley Fault Zone (SDVFZ) are more complex than predicted by the regional basin depth model. However, the program did calculate the contributions of the basin fill to the regional gravity field based on that depth model.

  12. Reynolds shear stress development in pressure-driven three-dimensional turbulent boundary-layers

    NASA Technical Reports Server (NTRS)

    Anderson, S. D.; Eaton, J. K.

    1987-01-01

    The development of the Reynolds stresses has been examined experimentally in an initially two-dimensional boundary layer which is driven to three dimensionality by a spanwise pressure gradient. The pressure field was imposed by an upstream-facing wedge. Two different wedge angles were used in order to vary the level of boundary layer skewing. Bradshaw's Al parameter was found to decrease with the rate of decrease being dependent on the level of skewing between the freestream and the wall flow. It was also concluded that the ratio of the cross-stream to streamwise shear stress components was governed by the rate of freestream turning.

  13. Note: Design and development of an integrated three-dimensional scanner for atomic force microscopy

    NASA Astrophysics Data System (ADS)

    Rashmi, T.; Dharsana, G.; Sriramshankar, R.; Sri Muthu Mrinalini, R.; Jayanth, G. R.

    2013-11-01

    A compact scanning head for the Atomic Force Microscope (AFM) greatly enhances the portability of AFM and facilitates easy integration with other tools. This paper reports the design and development of a three-dimensional (3D) scanner integrated into an AFM micro-probe. The scanner is realized by means of a novel design for the AFM probe along with a magnetic actuation system. The integrated scanner, the actuation system, and their associated mechanical mounts are fabricated and evaluated. The experimentally calibrated actuation ranges are shown to be over 1 μm along all the three axes.

  14. Recent Developments in Three Dimensional Radiation Transport Using the Green's Function Technique

    NASA Technical Reports Server (NTRS)

    Rockell, Candice; Tweed, John; Blattnig, Steve R.; Mertens, Christopher J.

    2010-01-01

    In the future, astronauts will be sent into space for longer durations of time compared to previous missions. The increased risk of exposure to dangerous radiation, such as Galactic Cosmic Rays and Solar Particle Events, is of great concern. Consequently, steps must be taken to ensure astronaut safety by providing adequate shielding. In order to better determine and verify shielding requirements, an accurate and efficient radiation transport code based on a fully three dimensional radiation transport model using the Green's function technique is being developed

  15. Note: Design and development of an integrated three-dimensional scanner for atomic force microscopy

    SciTech Connect

    Rashmi, T.; Dharsana, G.; Sriramshankar, R.; Sri Muthu Mrinalini, R.; Jayanth, G. R.

    2013-11-15

    A compact scanning head for the Atomic Force Microscope (AFM) greatly enhances the portability of AFM and facilitates easy integration with other tools. This paper reports the design and development of a three-dimensional (3D) scanner integrated into an AFM micro-probe. The scanner is realized by means of a novel design for the AFM probe along with a magnetic actuation system. The integrated scanner, the actuation system, and their associated mechanical mounts are fabricated and evaluated. The experimentally calibrated actuation ranges are shown to be over 1 μm along all the three axes.

  16. Development of Holistic Three-Dimensional Models for Cold Spray Supersonic Jet

    NASA Astrophysics Data System (ADS)

    Zahiri, S. H.; Phan, T. D.; Masood, S. H.; Jahedi, M.

    2014-08-01

    A three-dimensional, computational fluid dynamics (CFD) model is developed to estimate cold spray gas conditions. This model is calibrated and validated with respect to thermal history of a substrate exposed to the cold spray supersonic jet. The proposed holistic model is important to track state of gas and particles from injection point to the substrate surface with significant benefits for optimization of very rapid "nanoseconds" cold spray deposition. The three-dimensional model is developed with careful attention with respect to computation time to benefit broader cold spray industry with limited access to supercomputers. The k-ɛ-type CFD model is evaluated using measured temperature for a titanium substrate exposed to cold spray nitrogen at 800 °C and 3 MPa. The model important parameters are detailed including domain meshing method with turbulence, and dissipation coefficients during spraying. Heat transfer and radiation are considered for the de Laval nozzle used in experiments. The calibrated holistic model successfully estimated state of the gas for chosen high temperature and high pressure cold spray parameters used in this study. Further to this, the holistic model predictions with respect to the substrate maximum temperature had a good agreement with earlier findings in the literature.

  17. Development and validation of a three-dimensional morphodynamic modelling system for non-cohesive sediments

    NASA Astrophysics Data System (ADS)

    Pinto, L.; Fortunato, A. B.; Zhang, Y.; Oliveira, A.; Sancho, F. E. P.

    2012-11-01

    The morphology of estuaries and rivers changes constantly due to the dynamic imbalance between the forcing actions (e.g. river flow, tides, surface waves and wind) and the sedimentary reactions. Understanding and predicting these changes are very important for an scientific-based, sustained management of these systems. Morphodynamic process-based numerical models can be used for this purpose. The development and validation of a new three-dimensional unstructured grid morphodynamic modelling system, MORSELFE, aiming at simulating short-term morphological evolutions of estuaries and sandy rivers (temporal scale of days to month), are presented. MORSELFE couples a three-dimensional hydrodynamic model, with an advection-diffusion transport model for the suspended sediments, an empirical formula for the bed load, and a bed updating module. The model considers the simulation of non-cohesive sediment and does not account for wave effects. A new approach is proposed to compute the erosive fluxes, which adapts them to the vertical grid resolution. The use of unstructured grids and the implementation in parallel mode make MORSELFE particularly adapted to engineering applications. The model was assessed and validated against analytical and experimental test cases, also allowing the inference on the optimum choice of the model parameters and variables.

  18. Development of a three-dimensional Navier-Stokes code on CDC star-100 computer

    NASA Technical Reports Server (NTRS)

    Vatsa, V. N.; Goglia, G. L.

    1978-01-01

    A three-dimensional code in body-fitted coordinates was developed using MacCormack's algorithm. The code is structured to be compatible with any general configuration, provided that the metric coefficients for the transformation are available. The governing equations are developed in primitive variables in order to facilitate the incorporation of physical boundary conditions and turbulence-closure models. MacCormack's two-step, unsplit, time-marching algorithm is used to solve the unsteady Navier-Stokes equations until steady-state solution is achieved. Cases discussed include (1) flat plate in supersonic free stream; (2) supersonic flow along an axial corner; (3) subsonic flow in an axial corner at M infinity = 0.95; and (4) supersonic flow in an axial corner at M infinity 1.5.

  19. Early lens development in the zebrafish: a three-dimensional time-lapse analysis.

    PubMed

    Greiling, Teri M S; Clark, John I

    2009-09-01

    In vivo, high-resolution, time-lapse imaging characterized lens development in the zebrafish from 16 to 96 hr postfertilization (hpf). In zebrafish, the lens placode appeared in the head ectoderm, similar to mammals. Delamination of the surface ectoderm resulted in the formation of the lens mass, which progressed to a solid sphere of cells separating from the developing cornea at approximately 24 hpf. A lens vesicle was not observed and apoptosis was not a major factor in separation of the lens from the future cornea. Differentiation of primary fibers began in the lens mass followed by formation of the anterior epithelium after delamination was complete. Secondary fibers differentiated from elongating epithelial cells near the posterior pole. Quantification characterized three stages of lens growth. The study confirmed the advantages of live-cell imaging for three-dimensional quantitative structural characterization of the mechanism(s) responsible for cell differentiation in formation of a transparent, symmetric, and refractile lens. PMID:19504455

  20. Three-Dimensional Electron Optics Model Developed for Traveling-Wave Tubes

    NASA Technical Reports Server (NTRS)

    Kory, Carol L.

    2000-01-01

    A three-dimensional traveling-wave tube (TWT) electron beam optics model including periodic permanent magnet (PPM) focusing has been developed at the NASA Glenn Research Center at Lewis Field. This accurate model allows a TWT designer to develop a focusing structure while reducing the expensive and time-consuming task of building the TWT and hot-testing it (with the electron beam). In addition, the model allows, for the first time, an investigation of the effect on TWT operation of the important azimuthally asymmetric features of the focusing stack. The TWT is a vacuum device that amplifies signals by transferring energy from an electron beam to a radiofrequency (RF) signal. A critically important component is the focusing structure, which keeps the electron beam from diverging and intercepting the RF slow wave circuit. Such an interception can result in excessive circuit heating and decreased efficiency, whereas excessive growth in the beam diameter can lead to backward wave oscillations and premature saturation, indicating a serious reduction in tube performance. The most commonly used focusing structure is the PPM stack, which consists of a sequence of cylindrical iron pole pieces and opposite-polarity magnets. Typically, two-dimensional electron optics codes are used in the design of magnetic focusing devices. In general, these codes track the beam from the gun downstream by solving equations of motion for the electron beam in static-electric and magnetic fields in an azimuthally symmetric structure. Because these two-dimensional codes cannot adequately simulate a number of important effects, the simulation code MAFIA (solution of Maxwell's equations by the Finite-Integration-Algorithm) was used at Glenn to develop a three-dimensional electron optics model. First, a PPM stack was modeled in three dimensions. Then, the fields obtained using the magnetostatic solver were loaded into a particle-in-cell solver where the fully three-dimensional behavior of the beam

  1. Development of three-dimensional spherical discontinuous deformation analysis for granular materials

    NASA Astrophysics Data System (ADS)

    Zhao, Shilong

    This dissertation presents a new numerical method---three-dimensional spherical discontinuous deformation analysis model (DDA). This three-dimensional model maintains the characteristics of the original two-dimensional DDA and uses spherical elements to simulate the mechanical properties of granular materials under different loading conditions. A computer program was developed to handle a combination of continuous and discontinuous large displacement problems, as well as large deformation and failure analysis, under external loads and boundary conditions. Particulate materials are ubiquitous in nature and are encountered in all spheres of engineering. The mechanical behavior of these materials is, therefore, of utmost import to a number of engineering problems, for example, deformation and damage of soils and concrete, storage of grains and food-stuffs, flow processes in handling of particulate materials, ice floes, and materials processing. Past several decades have witnessed sustained efforts aimed at understanding the behavior of particulate materials. These efforts have resulted in the development of a variety of theoretical approaches and complementary computational and experimental techniques. The theoretical approaches for particulate materials have ranged from micro mechanical methods, with the consideration of particle interactions, to conventional continuum mechanics methods. Similarly, computer simulation and experimental methods have been developed to study phenomena ranging from particle-level to bulk behavior. A brief review of DDA's concepts is presented and differences between DDA and other numerical methods are discussed. The detailed analysis of 3D spherical DDA formulations is presented. The analytical solutions for the simple physical cases are used to verify the ability and accuracy of 3D spherical DDA model. The results are satisfactory. Numerical simulations are performed to show the capabilities of this model to handle discontinuous contact

  2. DRAGON Grid: A Three-Dimensional Hybrid Grid Generation Code Developed

    NASA Technical Reports Server (NTRS)

    Liou, Meng-Sing

    2000-01-01

    Because grid generation can consume 70 percent of the total analysis time for a typical three-dimensional viscous flow simulation for a practical engineering device, payoffs from research and development could reduce costs and increase throughputs considerably. In this study, researchers at the NASA Glenn Research Center at Lewis Field developed a new hybrid grid approach with the advantages of flexibility, high-quality grids suitable for an accurate resolution of viscous regions, and a low memory requirement. These advantages will, in turn, reduce analysis time and increase accuracy. They result from an innovative combination of structured and unstructured grids to represent the geometry and the computation domain. The present approach makes use of the respective strengths of both the structured and unstructured grid methods, while minimizing their weaknesses. First, the Chimera grid generates high-quality, mostly orthogonal meshes around individual components. This process is flexible and can be done easily. Normally, these individual grids are required overlap each other so that the solution on one grid can communicate with another. However, when this communication is carried out via a nonconservative interpolation procedure, a spurious solution can result. Current research is aimed at entirely eliminating this undesired interpolation by directly replacing arbitrary grid overlapping with a nonstructured grid called a DRAGON grid, which uses the same set of conservation laws over the entire region, thus ensuring conservation everywhere. The DRAGON grid is shown for a typical film-cooled turbine vane with 33 holes and 3 plenum compartments. There are structured grids around each geometrical entity and unstructured grids connecting them. In fiscal year 1999, Glenn researchers developed and tested the three-dimensional DRAGON grid-generation tools. A flow solver suitable for the DRAGON grid has been developed, and a series of validation tests are underway.

  3. Development of a three dimensional numerical water quality model for continental shelf applications

    NASA Technical Reports Server (NTRS)

    Spaulding, M.; Hunter, D.

    1975-01-01

    A model to predict the distribution of water quality parameters in three dimensions was developed. The mass transport equation was solved using a non-dimensional vertical axis and an alternating-direction-implicit finite difference technique. The reaction kinetics of the constituents were incorporated into a matrix method which permits computation of the interactions of multiple constituents. Methods for the computation of dispersion coefficients and coliform bacteria decay rates were determined. Numerical investigations of dispersive and dissipative effects showed that the three-dimensional model performs as predicted by analysis of simpler cases. The model was then applied to a two dimensional vertically averaged tidal dynamics model for the Providence River. It was also extended to a steady state application by replacing the time step with an iteration sequence. This modification was verified by comparison to analytical solutions and applied to a river confluence situation.

  4. On the Development of a Deterministic Three-Dimensional Radiation Transport Code

    NASA Technical Reports Server (NTRS)

    Rockell, Candice; Tweed, John

    2011-01-01

    Since astronauts on future deep space missions will be exposed to dangerous radiations, there is a need to accurately model the transport of radiation through shielding materials and to estimate the received radiation dose. In response to this need a three dimensional deterministic code for space radiation transport is now under development. The new code GRNTRN is based on a Green's function solution of the Boltzmann transport equation that is constructed in the form of a Neumann series. Analytical approximations will be obtained for the first three terms of the Neumann series and the remainder will be estimated by a non-perturbative technique . This work discusses progress made to date and exhibits some computations based on the first two Neumann series terms.

  5. A three-dimensional culture system using alginate hydrogel prolongs hatched cattle embryo development in vitro.

    PubMed

    Zhao, Shuan; Liu, Zhen-Xing; Gao, Hui; Wu, Yi; Fang, Yuan; Wu, Shuai-Shuai; Li, Ming-Jie; Bai, Jia-Hua; Liu, Yan; Evans, Alexander; Zeng, Shen-Ming

    2015-07-15

    No successful method exists to maintain the three-dimensional architecture of hatched embryos in vitro. Alginate, a linear polysaccharide derived from brown algae, has characteristics that make it an ideal material as a three-dimensional (3D) extracellular matrix for in vitro cell, tissue, or embryo culture. In this study, alginate hydrogel was used for IVC of posthatched bovine embryos to observe their development under the 3D system. In vitro-fertilized and parthenogenetically activated posthatched bovine blastocysts were cultured in an alginate encapsulation culture system (AECS), an alginate overlay culture system (AOCS), or control culture system. After 18 days of culture, the survival rate of embryos cultured in AECS was higher than that in the control group (P < 0.05), and the embryos were expanded and elongated in AECS with the maximal length of 1.125 mm. When the AECS shrinking embryos were taken out of the alginate beads on Day 18 and cultured in the normal culture system, 9.09% of them attached to the bottoms of the plastic wells and grew rapidly, with the largest area of an attached embryo being 66.00 mm(2) on Day 32. The embryos cultured in AOCS developed monovesicular or multivesicular morphologies. Total cell number of the embryos cultured in AECS on Day 19 was significantly higher than that of embryos on Day 8. Additionally, AECS and AOCS supported differentiation of the embryonic cells. Binuclear cells were visible in Day-26 adherent embryos, and the messenger RNA expression patterns of Cdx2 and Oct4 in AOCS-cultured embryos were similar to those in vivo embryos, whereas IFNT and ISG15 messenger RNA were still expressed in Day-26 and Day-32 prolong-cultured embryos. In conclusion, AECS and AOCS did support cell proliferation, elongation, and differentiation of hatched bovine embryos during prolonged IVC. The culture system will be useful to further investigate the molecular mechanisms controlling ruminant embryo elongation and implantation. PMID

  6. On the development of elastic three dimensional full waveform inversion in exploration geophysics

    NASA Astrophysics Data System (ADS)

    Birger Raknes, Espen; Arntsen, Børge

    2016-04-01

    Full waveform inversion (FWI) is a classical inverse method that tries to estimate subsurface models of parameters that affects wave propagation. The key requirement for the method is the numerical solution of the wave equation that is used to iteratively update the subsurface model through a optimization procedure of the dissimilarities between the synthetic and measured seismic data. Due to the computational cost to use FWI in practice, the standard procedure for applications of FWI in exploration geophysics has been to assume that the subsurface is a two-dimensional acoustic medium. One of the goals for FWI is to estimate the subsurface parameters using a three-dimensional elastic description of the medium. By incorporating more real world physics into the FWI method, the inversion results are more likely to be close to the true solution. The challenges towards this goal from a computational point of view is the extreme cost related to the numerical solution of the elastic wave equation, in addition to the required storage needs for performing one iteration of the optimization method. From a theoretical point of view, multi-parameter inversion (i.e. inversion of the density, P- and S-wave velocities) using surface seismic data is challenging because the inverse problem is ill-posed (in the Hadamard sense) and non-linear. In addition, the sensitivity in the data with respect to the elastic parameters is dependent on how the data are acquired. Hence, three-dimensional elastic FWI is challenging from both a theoretical and a computational point of view. In the recent years we have developed a three dimensional elastic FWI method where we are able to invert for the density, P-wave and S-wave velocities. To reduce the required storage needs for computing the model gradients through the adjoint state method, we have developed an efficient wave field reconstruction method that uses values on the domain boundaries to reconstruct the wave field inside the domain. To

  7. The development of microbatteries based on three-dimensional architectures for autonomous micro devices

    NASA Astrophysics Data System (ADS)

    Min, Hong-Seok

    2007-12-01

    The goal of fabricating three-dimensional (3D) microbatteries is to improve upon the performance of 2D microbatteries or thin-film batteries by reconfiguring existing materials in a more advanced architecture. 3D battery architectures offer a new approach for miniaturized power sources. These batteries are designed to have a small areal foot print and yet provide sufficient power and energy density to operate autonomous MEMS devices. The more convenient approaches for fabricating such batteries are based on micromachining techniques such as electrodeposition of high aspect ratio metal rods in an array configuration. Three types of three-dimensional microbatteries were fabricated and characterized: Ni-Zn, zinc-air, and Ag-Zn. These different types of microbatteries use different chemistries but all have the common feature of an out-of-plane array of micro-post electrodes. A 3D Ni-Zn microbattery was fabricated and demonstrated proper charge-discharge behavior for the first few cycles. The development of 3D zinc-air microbattery showed high discharge capability under various discharge conditions. Furthermore, performance of 3D zinc-air microbattery was demonstrated by successfully powering an electronic device. During discharge, the 3D zinc-air microbattery exhibited an electrode reaction which formed hollow ZnO electrodes by the Kirkendall effect. This electrode reaction strongly supports the functionality of the 3D microbattery. The fabrication of the Ag-Zn microbattery was accomplished by Ag electrode formation, separator coating, and Zn sedimentation. Due to imperfections in the separator coating, the 3D Ag-Zn microbattery had electrical shorts.

  8. Development of a three-dimensional, regional, coupled wave, current, and sediment-transport model

    USGS Publications Warehouse

    Warner, J.C.; Sherwood, C.R.; Signell, R.P.; Harris, C.K.; Arango, H.G.

    2008-01-01

    We are developing a three-dimensional numerical model that implements algorithms for sediment transport and evolution of bottom morphology in the coastal-circulation model Regional Ocean Modeling System (ROMS v3.0), and provides a two-way link between ROMS and the wave model Simulating Waves in the Nearshore (SWAN) via the Model-Coupling Toolkit. The coupled model is applicable for fluvial, estuarine, shelf, and nearshore (surfzone) environments. Three-dimensional radiation-stress terms have been included in the momentum equations, along with effects of a surface wave roller model. The sediment-transport algorithms are implemented for an unlimited number of user-defined non-cohesive sediment classes. Each class has attributes of grain diameter, density, settling velocity, critical stress threshold for erosion, and erodibility constant. Suspended-sediment transport in the water column is computed with the same advection-diffusion algorithm used for all passive tracers and an additional algorithm for vertical settling that is not limited by the CFL criterion. Erosion and deposition are based on flux formulations. A multi-level bed framework tracks the distribution of every size class in each layer and stores bulk properties including layer thickness, porosity, and mass, allowing computation of bed morphology and stratigraphy. Also tracked are bed-surface properties including active-layer thickness, ripple geometry, and bed roughness. Bedload transport is calculated for mobile sediment classes in the top layer. Bottom-boundary layer submodels parameterize wave-current interactions that enhance bottom stresses and thereby facilitate sediment transport and increase bottom drag, creating a feedback to the circulation. The model is demonstrated in a series of simple test cases and a realistic application in Massachusetts Bay. ?? 2008 Elsevier Ltd. All rights reserved.

  9. Development Of A Three-Dimensional Circuit Integration Technology And Computer Architecture

    NASA Astrophysics Data System (ADS)

    Etchells, R. D.; Grinberg, J.; Nudd, G. R.

    1981-12-01

    This paper is the first of a series 1,2,3 describing a range of efforts at Hughes Research Laboratories, which are collectively referred to as "Three-Dimensional Microelectronics." The technology being developed is a combination of a unique circuit fabrication/packaging technology and a novel processing architecture. The packaging technology greatly reduces the parasitic impedances associated with signal-routing in complex VLSI structures, while simultaneously allowing circuit densities orders of magnitude higher than the current state-of-the-art. When combined with the 3-D processor architecture, the resulting machine exhibits a one- to two-order of magnitude simultaneous improvement over current state-of-the-art machines in the three areas of processing speed, power consumption, and physical volume. The 3-D architecture is essentially that commonly referred to as a "cellular array", with the ultimate implementation having as many as 512 x 512 processors working in parallel. The three-dimensional nature of the assembled machine arises from the fact that the chips containing the active circuitry of the processor are stacked on top of each other. In this structure, electrical signals are passed vertically through the chips via thermomigrated aluminum feedthroughs. Signals are passed between adjacent chips by micro-interconnects. This discussion presents a broad view of the total effort, as well as a more detailed treatment of the fabrication and packaging technologies themselves. The results of performance simulations of the completed 3-D processor executing a variety of algorithms are also presented. Of particular pertinence to the interests of the focal-plane array community is the simulation of the UNICORNS nonuniformity correction algorithms as executed by the 3-D architecture.

  10. Dose calculation software for helical tomotherapy, utilizing patient CT data to calculate an independent three-dimensional dose cube

    SciTech Connect

    Thomas, Simon J.; Eyre, Katie R.; Tudor, G. Samuel J.; Fairfoul, Jamie

    2012-01-15

    Purpose: Treatment plans for the TomoTherapy unit are produced with a planning system that is integral to the unit. The authors have produced an independent dose calculation system, to enable plans to be recalculated in three dimensions, using the patient's CT data. Methods: Software has been written using MATLAB. The DICOM-RT plan object is used to determine the treatment parameters used, including the treatment sinogram. Each projection of the sinogram is segmented and used to calculate dose at multiple calculation points in a three-dimensional grid using tables of measured beam data. A fast ray-trace algorithm is used to determine effective depth for each projection angle at each calculation point. Calculations were performed on a standard desktop personal computer, with a 2.6 GHz Pentium, running Windows XP. Results: The time to perform a calculation, for 3375 points averaged 1 min 23 s for prostate plans and 3 min 40 s for head and neck plans. The mean dose within the 50% isodose was calculated and compared with the predictions of the TomoTherapy planning system. When the modified CT (which includes the TomoTherapy couch) was used, the mean difference for ten prostate patients, was -0.4% (range -0.9% to +0.3%). With the original CT (which included the CT couch), the mean difference was -1.0% (range -1.7% to 0.0%). The number of points agreeing with a gamma 3%/3 mm averaged 99.2% with the modified CT, 96.3% with the original CT. For ten head and neck patients, for the modified and original CT, respectively, the mean difference was +1.1% (range -0.4% to +3.1%) and 1.1% (range -0.4% to +3.0%) with 94.4% and 95.4% passing a gamma 4%/4 mm. The ability of the program to detect a variety of simulated errors has been tested. Conclusions: By using the patient's CT data, the independent dose calculation performs checks that are not performed by a measurement in a cylindrical phantom. This enables it to be used either as an additional check or to replace phantom

  11. Three-dimensional analysis of the early development of the dentition

    PubMed Central

    Peterkova, R; Hovorakova, M; Peterka, M; Lesot, H

    2014-01-01

    Tooth development has attracted the attention of researchers since the 19th century. It became obvious even then that morphogenesis could not fully be appreciated from two-dimensional histological sections. Therefore, methods of three-dimensional (3D) reconstructions were employed to visualize the surface morphology of developing structures and to help appreciate the complexity of early tooth morphogenesis. The present review surveys the data provided by computer-aided 3D analyses to update classical knowledge of early odontogenesis in the laboratory mouse and in humans. 3D reconstructions have demonstrated that odontogenesis in the early stages is a complex process which also includes the development of rudimentary odontogenic structures with different fates. Their developmental, evolutionary, and pathological aspects are discussed. The combination of in situ hybridization and 3D reconstruction have demonstrated the temporo-spatial dynamics of the signalling centres that reflect transient existence of rudimentary tooth primordia at loci where teeth were present in ancestors. The rudiments can rescue their suppressed development and revitalize, and then their subsequent autonomous development can give rise to oral pathologies. This shows that tooth-forming potential in mammals can be greater than that observed from their functional dentitions. From this perspective, the mouse rudimentary tooth primordia represent a natural model to test possibilities of tooth regeneration. PMID:24495023

  12. Three-dimensional imaging of the developing mouse female reproductive organs with optical coherence tomography

    NASA Astrophysics Data System (ADS)

    Burton, Jason C.; Wang, Shang; Behringer, Richard R.; Larina, Irina V.

    2016-03-01

    Infertility is a known major health concern and is estimated to impact ~15% of couples in the U.S. The majority of failed pregnancies occur before or during implantation of the fertilized embryo into the uterus. Understanding the mechanisms regulating development by studying mouse reproductive organs could significantly contribute to an improved understanding of normal development of reproductive organs and developmental causes of infertility in humans. Towards this goal, we report a three-dimensional (3D) imaging study of the developing mouse reproductive organs (ovary, oviduct, and uterus) using optical coherence tomography (OCT). In our study, OCT was used for 3D imaging of reproductive organs without exogenous contrast agents and provides micro-scale spatial resolution. Experiments were conducted in vitro on mouse reproductive organs ranging from the embryonic day 14.5 to adult stages. Structural features of the ovary, oviduct, and uterus are presented. Additionally, a comparison with traditional histological analysis is illustrated. These results provide a basis for a wide range of infertility studies in mouse models. Through integration with traditional genetic and molecular biology approaches, this imaging method can improve understanding of ovary, oviduct, and uterus development and function, serving to further contribute to our understanding of fertility and infertility.

  13. Development of particulate matter transfer coefficients using a three-dimensional air quality model

    SciTech Connect

    Seigneur, C.; Tonne, C.; Vijayaraghavan, K.; Pai, P.; Levin, L.

    1999-07-01

    Air quality model simulations constitute an effective approach to develop source-receptor relationships (so-called transfer coefficients in the risk analysis framework) because a significant fraction of particulate matter (particularly PM{sub 2.5}) is secondary and, therefore, depends on the atmospheric chemistry of the airshed. These source-receptor relationships can be made specific to source regions and major pollutants. In this study, the authors have used a comprehensive three-dimensional air quality model for PM (SAQM-AERO) to generate episodic transfer coefficients for several source regions in the Los Angeles basin (i.e., surface coastal region, elevated coastal region, central basin, and downwind region). Transfer coefficients were developed by conducting PM air quality simulations with reduced emissions of one of the four precursors (i.e., primary PM, SO{sub 2}, NO{sub x}, and VOC) from each source region. The authors have also compared the transfer coefficients generated from explicit modeling with those based on expert judgment, which were obtained by integrating information from the development of the baseline simulation and across-the-board emission reduction simulations.

  14. Three-dimensional structures and turbulence closure of the wake developing in a wall shear layer

    NASA Technical Reports Server (NTRS)

    Hah, C.

    1981-01-01

    The turbulent wake interacting with the rotating wall shear layer is investigated analytically and numerically. The turbulent wakes of the rotating blades in a compressor which are interacting with the rotating hub-wall boundary layer are analyzed. A modified version of the closure model of the pressure-strain correlation term in the Reynolds stress transport equation is developed to predict the effect of rotation, which is appreciable for the present flow because the thick hub-wall boundary layer is interacting with the rotor wake. It is noted that the Poisson type equation for the pressure-strain correlation has an extra rotation term when the entire flow field is rotating. This extra rotation term is modeled to accommodate the effect of rotation. In addition, the standard correction for the wall effect is incorporated for the utilized Reynolds stress closure model. The rotation-modified Reynolds stress closure model is used to predict the present flow, and the predictions are compared with the experimental data. The experimental data reveal that the characteristics of the three-dimensional turbulent wake interacting with the wall shear layer are considerably altered by the effects of the wall and the rotation. These features are predicted with good accuracy by the turbulence closure model developed.

  15. Current Challenges in Development of a Database of Three-Dimensional Chemical Structures

    PubMed Central

    Maeda, Miki H.

    2015-01-01

    We are developing a database named 3DMET, a three-dimensional structure database of natural metabolites. There are two major impediments to the creation of 3D chemical structures from a set of planar structure drawings: the limited accuracy of computer programs and insufficient human resources for manual curation. We have tested some 2D–3D converters to convert 2D structure files from external databases. These automatic conversion processes yielded an excessive number of improper conversions. To ascertain the quality of the conversions, we compared IUPAC Chemical Identifier and canonical SMILES notations before and after conversion. Structures whose notations correspond to each other were regarded as a correct conversion in our present work. We found that chiral inversion is the most serious factor during the improper conversion. In the current stage of our database construction, published books or articles have been resources for additions to our database. Chemicals are usually drawn as pictures on the paper. To save human resources, an optical structure reader was introduced. The program was quite useful but some particular errors were observed during our operation. We hope our trials for producing correct 3D structures will help other developers of chemical programs and curators of chemical databases. PMID:26075200

  16. A three-dimensional culture system recapitulates placental syncytiotrophoblast development and microbial resistance

    PubMed Central

    McConkey, Cameron A.; Delorme-Axford, Elizabeth; Nickerson, Cheryl A.; Kim, Kwang Sik; Sadovsky, Yoel; Boyle, Jon P.; Coyne, Carolyn B.

    2016-01-01

    In eutherians, the placenta acts as a barrier and conduit at the maternal-fetal interface. Syncytiotrophoblasts, the multinucleated cells that cover the placental villous tree surfaces of the human placenta, are directly bathed in maternal blood and are formed by the fusion of progenitor cytotrophoblasts that underlie them. Despite their crucial role in fetal protection, many of the events that govern trophoblast fusion and protection from microbial infection are unknown. We describe a three-dimensional (3D)–based culture model using human JEG-3 trophoblast cells that develop syncytiotrophoblast phenotypes when cocultured with human microvascular endothelial cells. JEG-3 cells cultured in this system exhibit enhanced fusogenic activity and morphological and secretory activities strikingly similar to those of primary human syncytiotrophoblasts. RNASeq analyses extend the observed functional similarities to the transcriptome, where we observed significant overlap between syncytiotrophoblast-specific genes and 3D JEG-3 cultures. Furthermore, JEG-3 cells cultured in 3D are resistant to infection by viruses and Toxoplasma gondii, which mimics the high resistance of syncytiotrophoblasts to microbial infections in vivo. Given that this system is genetically manipulatable, it provides a new platform to dissect the mechanisms involved in syncytiotrophoblast development and microbial resistance. PMID:26973875

  17. Current Challenges in Development of a Database of Three-Dimensional Chemical Structures.

    PubMed

    Maeda, Miki H

    2015-01-01

    We are developing a database named 3DMET, a three-dimensional structure database of natural metabolites. There are two major impediments to the creation of 3D chemical structures from a set of planar structure drawings: the limited accuracy of computer programs and insufficient human resources for manual curation. We have tested some 2D-3D converters to convert 2D structure files from external databases. These automatic conversion processes yielded an excessive number of improper conversions. To ascertain the quality of the conversions, we compared IUPAC Chemical Identifier and canonical SMILES notations before and after conversion. Structures whose notations correspond to each other were regarded as a correct conversion in our present work. We found that chiral inversion is the most serious factor during the improper conversion. In the current stage of our database construction, published books or articles have been resources for additions to our database. Chemicals are usually drawn as pictures on the paper. To save human resources, an optical structure reader was introduced. The program was quite useful but some particular errors were observed during our operation. We hope our trials for producing correct 3D structures will help other developers of chemical programs and curators of chemical databases. PMID:26075200

  18. Development of three-dimensional code for the analysis of jet mixing problem. Part 1: Laminar solution

    NASA Technical Reports Server (NTRS)

    Abdol-Hamid, Khaled S.

    1988-01-01

    Future aircraft will eventually feature nonaxisymmetric or rectangular nozzles. Developing a three-dimensional code to stimulate the characteristics of the jet exhaust plume, issuing from nonaxisymmetric nozzles, in general, at different flight conditions, is very important. Two three-dimensional codes were developed to simulate the shock-cell structure of circular nozzles. These codes were developed to solve the parabolized and simplified Navier-Stokes equations respectively. Both codes are based on a method previously developed by Newsome et al. These codes are fully vectorized on the VPS 32 at NASA Langley Research Center. The axisymmetric underexpanded supersonic jet flow problem, exhausting into still air, was used as a test case for developing an efficient three-dimensional problems and preserving crossplane symmetry of the flow downstream of the jet exit.

  19. Development of Superconducting-Tunnel-Junction Array Detectors with Three-Dimensional Structure Beyond 1000-Pixels

    NASA Astrophysics Data System (ADS)

    Fujii, Go; Ukibe, Masahiro; Shiki, Shigetomo; Ohkubo, Masataka

    2016-07-01

    Superconducting-tunnel-junction (STJ) array X-ray detectors have exhibited excellent characteristics for fluorescence-yield X-ray absorption fine structure (XAFS) in a soft X-ray range. For high-throughput XAFS analyses, we developed a new close-packed STJ arrangement with a space of 10 \\upmu m (use the correct space) between adjacent STJ pixels by using three-dimensional multilayer structure (3D-STJ) with the wiring layer underneath the STJ pixel layer. In this work, in order to solve a double-peak response originating from absorption events in the top and bottom electrodes, we have fabricated the 3D-STJ with an asymmetric layer structure. Single-peak response for the soft X-rays below 0.7 keV was obtained. The closed-packed 3D-STJ array detector with 100 pixels has an operation yield of 93 % and a mean energy resolution of 12.5 ± 0.7 eV in full-width at half-maximum for the C-Kα X-ray.

  20. Three-Dimensional Magnetotelluric Inversion: An Introductory Guide for Developers and Users

    NASA Astrophysics Data System (ADS)

    Siripunvaraporn, Weerachai

    2012-01-01

    In the last few decades, the demand for three-dimensional (3-D) inversions for magnetotelluric data has significantly driven the progress of 3-D codes. There are currently a lot of new 3-D inversion and forward modeling codes. Some, such as the WSINV3DMT code of the author, are available to the academic community. The goal of this paper is to summarize all the important issues involving 3-D inversions. It aims to show how inversion works and how to use it properly. In this paper, I start by describing several good reasons for doing 3-D inversion instead of 2-D inversion. The main algorithms for 3-D inversion are reviewed along with some comparisons of their advantages and disadvantages. These algorithms are the classical Occam's inversion, the data space Occam's inversion, the Gauss-Newton method, the Gauss-Newton with the conjugate gradient method, the non-linear conjugate gradient method, and the quasi-Newton method. Other variants are based on these main algorithms. Forward modeling, sensitivity calculations, model covariance and its parallel implementation are all necessary components of inversions and are reviewed here. Rules of thumb for performing 3-D inversion are proposed for the benefit of the 3-D inversion novice. Problems regarding 3-D inversions are discussed along with suggested topics for future research for the developers of the next decades.

  1. Development of a Three-Dimensional Urban Energy Model for Predicting and Understanding Surface Temperature Distribution

    NASA Astrophysics Data System (ADS)

    Yang, Xinyan; Li, Yuguo

    2013-11-01

    The Model for Urban Surface Temperature, a three-dimensional approach, is developed for a realistically complex city with considerations of the energy exchange processes at the urban surface. The discrete transfer method and Gebhart absorption factor method are used for the shape factor estimation and multiple reflection calculation, respectively. The surface energy balance model is evaluated against existing field measurements that pertain to idealized urban geometry. It performs well in terms of predicting surface temperature and heat fluxes by allowing for detailed urban surface properties and meteorological conditions. The compressed row storage scheme is applied to calculate the transfer of surface thermal radiation, which dramatically reduces the computational requirements. This strategy permits the rigorous consideration of multiple reflections in a realistic urban area with hundreds of buildings. The result illustrates that considering only the first reflection is a good approach when the urban area is comprised of typical urban materials, e.g. materials with high emissivity and low albedo, because relatively accurate computational results can be obtained rapidly by avoiding the multiple reflection calculation.

  2. Reynolds stress development in pressure-driven three-dimensional turbulent boundary layers

    NASA Technical Reports Server (NTRS)

    Anderson, Shawn D.; Eaton, John K.

    1989-01-01

    The development of the Reynolds stress field was studied for flows in which an initially two-dimensional boundary layer was skewed sideways by a spanwise pressure gradient ahead of an upstream-facing wedge. Two different wedges were used, providing a variation in the boundary-layer skewing. Measurements of all components of the Reynolds stress tensor and all ten triple products were measured using a rotatable cross-wire anemometer. The results show the expected lag of the shear stress vector behind the strain rate. Comparison of the two present experiments with previous data suggests that the lag can be estimated if the radius of curvature of the free-stream streamline is known. The magnitude of the shear stress vector in the plane of the wall is seen to decrease rapidly as the boundary-layer skewing increases. The amount of decrease is apparently related to the skewing angle between the wall and the free stream. The triple products evolve rapidly and profiles in the three-dimensional boundary layer are considerably different than two-dimensional profiles, leaving little hope for gradient transport models for the Reynolds stresses. The simplified model presented by Rotta (1979) performs reasonably well providing that an appropriate value of the T-parameter is chosen.

  3. Three-Dimensional Magnetic Analysis Technique Developed for Evaluating Stirling Convertor Linear Alternators

    NASA Technical Reports Server (NTRS)

    Geng, Steven M.

    2003-01-01

    The Department of Energy, the Stirling Technology Company (STC), and the NASA Glenn Research Center are developing Stirling convertors for Stirling radioisotope generators to provide electrical power for future NASA deep space missions. STC is developing the 55-We technology demonstration convertor (TDC) under contract to the Department of Energy. The Department of Energy recently named Lockheed Martin as the system integration contractor for the Stirling radioisotope generator development project. Lockheed Martin will develop the Stirling radioisotope generator engineering unit and has contract options to develop the qualification unit and the first flight unit. Glenn s role includes an in-house project to provide convertor, component, and materials testing and evaluation in support of the overall power system development. As a part of this work, Glenn has established an in-house Stirling research laboratory for testing, analyzing, and evaluating Stirling machines. STC has built four 55-We convertors for NASA, and these are being tested at Glenn. A cross-sectional view of the 55-We TDC is shown in the figure. Of critical importance to the successful development of the Stirling convertor for space power applications is the development of a lightweight and highly efficient linear alternator. In support, Glenn has been developing finite element analysis and finite element method tools for performing various linear alternator thermal and electromagnetic analyses and evaluating design configurations. A three-dimensional magnetostatic finite element model of STC's 55-We TDC linear alternator was developed to evaluate the demagnetization fields affecting the alternator magnets. Since the actual linear alternator hardware is symmetric to the quarter section about the axis of motion, only a quarter section of the alternator was modeled. The components modeled included the mover laminations, the neodymium-iron-boron magnets, the stator laminations, and the copper coils. The

  4. Three-Dimensional Visualization of Developing Neurovascular Architecture in the Craniofacial Region of Embryonic Mice.

    PubMed

    Sugimoto, Toshiaki; Taya, Yuji; Shimazu, Yoshihito; Soeno, Yuuichi; Sato, Kaori; Aoba, Takaaki

    2015-11-01

    Recent studies have highlighted the mechanism of vascular and axonal guidance to ensure proper morphogenesis and organogenesis. We aimed to perform global mapping of developing neurovascular networks during craniofacial development of embryonic mice. To this end, we developed histology-based three-dimensional (3D) reconstructions using paraffin-embedded serial sections obtained from mouse embryos. All serial sections were dual-immunolabeled with Pecam1 and Pgp9.5/Gap43 cocktail antibodies. All immunolabeled serial sections were digitized with virtual microscopy to acquire high spatial resolution images. The 3D reconstructs warranted superior positional accuracy to trace the long-range connectivity of blood vessels and individual cranial nerve axons. It was feasible to depict simultaneously the details of angiogenic sprouting and axon terminal arborization and to assess quantitatively the locoregional proximity between blood vessels and cranial nerve axons. Notably, 3D views of the craniofacial region revealed the following: Branchial arch arteries and blood capillary plexi were formed without accompanying nerves at embryonic day (E) 9.5. Cranial nerve axons began to grow into the branchial arches, developing a labyrinth of small blood vessels at E10.5. Vascular remodeling occurred, and axon terminals of the maxillary, mandibular, chorda tympani, and hypoglossal nerve axons had arborized around the lateral lingual swellings at E11.5. The diverged patterning of trigeminal nerves and the arterial branches from the carotid artery became congruent at E11.5. The overall results support the advantage of dual-immunolabeling and 3D reconstruction technology to document the architecture and wiring of the developing neurovascular networks in mouse embryos. PMID:26054056

  5. Numerical investigation of the three-dimensional development in boundary layer transition

    NASA Astrophysics Data System (ADS)

    Fasel, H. F.; Rist, U.; Konzelmann, U.

    1987-06-01

    A numerical method for solving the complete Navier-Stokes equations for incompressible flows is introduced that is applicable for investigating three-dimensional transition phenomena in a spatially-growing boundary layer. Results are discussed for a test case with small three-dimensional disturbances for which detailed comparison to linear stability theory is possible. The validity of this numerical model for investigating nonlinear transition phenomena is demonstrated by realistic spatial simulations of the experiments by Kachanov and Levchenko (1984) for a subharmonic resonance breakdown and of the experiments of Klebanoff et al. (1962) for a fundamental resonance breakdown.

  6. Three-dimensional hydrodynamic and water quality model for TMDL development of Lake Fuxian, China.

    PubMed

    Zhao, Lei; Zhang, Xiaoling; Liu, Yong; He, Bin; Zhu, Xiang; Zou, Rui; Zhu, Yuanguan

    2012-01-01

    Lake Fuxian is the largest deep freshwater lake in China. Although its average water quality meets Class I of the China National Water Quality Standard (CNWQS), i.e., GB3838-2002, monitoring data indicate that the water quality approaches the Class II threshold in some areas. Thus it is urgent to reduce the watershed load through the total maximum daily load (TMDL) program. A three-dimensional hydrodynamic and water quality model was developed for Lake Fuxian, simulating flow circulation and pollutant fate and transport. The model development process consists of several steps, including grid generation, initial and boundary condition configurations, and model calibration processes. The model accurately reproduced the observed water surface elevation, spatiotemporal variations in temperature, and total nitrogen (TN), total phosphorus (TP), and chemical oxygen demand (COD) concentrations, suggesting a reasonable numerical representation of the prototype system for further TMDL analyses. The TMDL was calculated using two interpretations of the water quality standards for Class I of the CNWQS based on the maximum instantaneous surface and annual average surface water concentrations. Analysis of the first scenario indicated that the TN, TP and COD loads should be reduced by 66%, 68% and 57%, respectively. Water quality was the highest priority; however, local economic development and cost feasibility for load reduction can pose significant issues. In the second interpretation, the model results showed that, under the existing conditions, the average water quality meets the Class I standard and therefore load reduction is unnecessary. Future studies are needed to conduct risk and cost assessments for realistic decision-making. PMID:23513675

  7. Development of Holographic Particle Velocimetry Techniques for Three-Dimensional Vortical Flows

    NASA Astrophysics Data System (ADS)

    Meng, Hui

    The lack of techniques to measure instantaneous velocity vector fields in three-dimensional (3D) space is the primary obstacle to further understanding of vortex dynamics and turbulence phenomena. Holographic Particle Velocimetry (HPV), which can record a 3D flow field laden with tracer particles on holograms using pulsed laser beams and measure the particle displacements, appears to be highly promising to this end. An HPV technique based on in-line holography has been implemented, which is characterized by geometric simplicity and minimal laser requirements. To overcome limitations (such as intrinsic speckle noise and large depth-of-focus) of in-line HPV, an analytical model has been developed which elucidates the nature of the speckle noise, quantifies the signal-to-noise-ratio of particle images as a function of particle field parameters, and suggests ways for further improvements in HPV concepts. Based upon these results, an off-axis HPV system has been developed in which speckle noise is suppressed and depth-of-focus is reduced, but the system complexity increases as well. Improving upon off-axis HPV, two innovative techniques--viz. multibeam, and in-line recording/off-axis viewing (IROV)--have been proposed. Proof-of-concept has been established for the multibeam HPV which utilizes the laser energy efficiently. The IROV technique, which enjoys the geometric simplicity of in-line HPV as well as the low speckle noise and small depth-of-focus of off-axis HPV has been developed and applied to measure an unstable vortex ring (Re = 1360) in water. The instantaneous velocity vector field in a 3D space (21 mm x 40 mm x 11 mm) is obtained at a spatial resolution of 1 mm. The vorticity distribution and circulation as a function of radius from the core center are calculated.

  8. Development of a Three-Dimensional Finite Element Chest Model for the 5(th) Percentile Female.

    PubMed

    Kimpara, Hideyuki; Lee, Jong B; Yang, King H; King, Albert I; Iwamoto, Masami; Watanabe, Isao; Miki, Kazuo

    2005-11-01

    Several three-dimensional (3D) finite element (FE) models of the human body have been developed to elucidate injury mechanisms due to automotive crashes. However, these models are mainly focused on 50(th) percentile male. As a first step towards a better understanding of injury biomechanics in the small female, a 3D FE model of a 5(th) percentile female human chest (FEM-5F) has been developed and validated against experimental data obtained from two sets of frontal impact, one set of lateral impact, two sets of oblique impact and a series of ballistic impacts. Two previous FE models, a small female Total HUman Model for Safety (THUMS-AF05) occupant version 1.0Beta (Kimpara et al. 2002) and the Wayne State University Human Thoracic Model (WSUHTM, Wang 1995 and Shah et al. 2001) were integrated and modified for this model development. The model incorporated not only geometrical gender differences, such as location of the internal organs and structure of the bony skeleton, but also the biomechanical differences of the ribs due to gender. It includes a detailed description of the sternum, ribs, costal cartilage, thoracic spine, skin, superficial muscles, intercostal muscles, heart, lung, diaphragm, major blood vessels and simplified abdominal internal organs and has been validated against a series of six cadaveric experiments on the small female reported by Nahum et al. (1970), Kroell et al. (1974), Viano (1989), Talantikite et al. (1998) and Wilhelm (2003). Results predicted by the model were well-matched to these experimental data for a range of impact speeds and impactor masses. More research is needed in order to increase the accuracy of predicting rib fractures so that the mechanisms responsible for small female injury can be more clearly defined. PMID:17096277

  9. Development and validation of a three-dimensional, wave-current coupled model on unstructured meshes

    NASA Astrophysics Data System (ADS)

    Wang, JinHua; Shen, YongMing

    2011-01-01

    Using unstructured meshes provides great flexibility for modeling the flow in complex geomorphology of tidal creeks, barriers and islands, with refined grid resolution in regions of interest and not elsewhere. In this paper, an unstructured three-dimensional fully coupled wave-current model is developed. Firstly, a parallel, unstructured wave module is developed. Variations in wave properties are governed by a wave energy equation that includes wave-current interactions and dissipation representative of wave breaking. Then, the existing Finite-Volume Coastal Ocean Model (FVCOM) is modified to couple with the wave module. The couple procedure includes depth dependent wave radiation stress terms, Stokes drift, vertical transfer of wave-generated pressure transfer to the mean momentum equation, wave dissipation as a source term in the turbulence kinetic energy equation, and mean current advection and refraction of wave energy. Several applications are presented to evaluate the developed model. In particular the wind and wave-induced storm surge generated by Hurricane Katrina is investigated. The obtained results have been compared to the in situ measurements with respect to the wave heights and water level elevations revealing good accuracy of the model in reproduction of the investigated events. In a comparison to water level measurements at Dauphin Island, inclusion of the wave induced water level setup reduced the normalized root mean square error from 0.301 to 0.257 m and increased the correlation coefficient from 0.860 to 0.929. Several runs were carried out to analyze the effects of waves. The experiments show that among the processes that represent wave effects, radiation stress and wave-induced surface stress are more important than wave-induced bottom stress in affecting the water level. The Hurricane Katrina simulations showed the importance of the inclusion of the wave effects for the hindcast of the water levels during the storm surge.

  10. Development of Three-Dimensional Multicellular Tissue-Like Constructs for Mutational Analysis Using Macroporous Microcarriers

    NASA Technical Reports Server (NTRS)

    Jordan, Jacqueline A.; Fraga, Denise N.; Gonda, Steve R.

    2002-01-01

    A three-dimensional (3-D), tissue-like model was developed for the genotoxic assessment of space environment. In previous experiments, we found that culturing mammalian cells in a NASA-designed bioreactor, using Cytodex-3 beads as a scaffold, generated 3-D multicellular spheroids. In an effort to generate scaffold-free spheroids, we developed a new 3-D tissue-like model by coculturing fibroblast and epithelial cell in a NASA bioreactor using macroporous Cultispher-S(TradeMark) microcarriers. Big Blue(Registered Trademark) Rat 2(Lambda) fibroblasts, genetically engineered to contain multiple copies (>60 copies/cell) of the Lac I target gene, were cocultured with radio-sensitive human epithelial cells, H184F5. Over an 8-day period, samples were periodically examined by microscopy and histology to confirm cell attachment, growth, and viability. Immunohistochemistry and western analysis were used to evaluate the expression of specific cytoskeletal and adhesion proteins. Key cell culture parameters (glucose, pH, and lactate concentrations) were monitored daily. Controls were two-dimensional mono layers of fibroblast or epithelial cells cultured in T-flasks. Analysis of 3-D spheroids from the bioreactor suggests fibroblast cells attached to and completely covered the bead surface and inner channels by day 3 in the bioreactor. Treatment of the 3-day spheroids with dispase II dissolved the Cultisphers(TradeMark) and produced multicellular, bead-less constructs. Immunohistochemistry confirmed the presence of vi.mentin, cytokeratin and E-cadherin in treated spheroids. Examination of the dispase II treated spheroids with transmission electron microscopy (TEM) also showed the presence of desmosomes. These results suggest that the controlled enzymatic degradation of an artificial matrix in the low shear environment of the NASA-designed bioreactor can produce 3-D tissue-like spheroids. 2

  11. Development of lead iodide perovskite solar cells using three-dimensional titanium dioxide nanowire architectures.

    PubMed

    Yu, Yanhao; Li, Jianye; Geng, Dalong; Wang, Jialiang; Zhang, Lushuai; Andrew, Trisha L; Arnold, Michael S; Wang, Xudong

    2015-01-27

    Three-dimensional (3D) nanowire (NW) architectures are considered as superior electrode design for photovoltaic devices compared to NWs or nanoparticle systems in terms of improved large surface area and charge transport properties. In this paper, we report development of lead iodide perovskite solar cells based on a novel 3D TiO2 NW architectures. The 3D TiO2 nanostructure was synthesized via surface-reaction-limited pulsed chemical vapor deposition (SPCVD) technique that also implemented the Kirkendall effect for complete ZnO NW template conversion. It was found that the film thickness of 3D TiO2 can significantly influence the photovoltaic performance. Short-circuit current increased with the TiO2 length, while open-circuit voltage and fill factor decreased with the length. The highest power conversion efficiency (PCE) of 9.0% was achieved with ∼ 600 nm long 3D TiO2 NW structures. Compared to other 1D nanostructure arrays (TiO2 nanotubes, TiO2-coated ZnO NWs and ZnO NWs), 3D TiO2 NW architecture was able to achieve larger amounts of perovskite loading, enhanced light harvesting efficiency, and increased electron-transport property. Therefore, its PCE is 1.5, 2.3, and 2.8 times higher than those of TiO2 nanotubes, TiO2-coated ZnO NWs, and ZnO NWs, respectively. The unique morphological advantages, together with the largely suppressed hysteresis effect, make 3D hierarchical TiO2 a promising electrode selection in designing high-performance perovskite solar cells. PMID:25549153

  12. Development of novel three-dimensional printed scaffolds for osteochondral regeneration.

    PubMed

    Holmes, Benjamin; Zhu, Wei; Li, Jiaoyan; Lee, James D; Zhang, Lijie Grace

    2015-01-01

    As modern medicine advances, various methodologies are being explored and developed in order to treat severe osteochondral defects in joints. However, it is still very challenging to cure the osteochondral defects due to their poor inherent regenerative capacity, complex stratified architecture, and disparate biomechanical properties. The objective of this study is to create novel three-dimensional (3D) printed osteochondral scaffolds with both excellent interfacial mechanical properties and biocompatibility for facilitating human bone marrow mesenchymal stem cell (MSC) growth and chondrogenic differentiation. For this purpose, we designed and 3D printed a series of innovative bi-phasic 3D models that mimic the osteochondral region of articulate joints. Our mechanical testing results showed that our bi-phasic scaffolds with key structures have enhanced mechanical characteristics in compression (a maximum Young's modulus of 31 MPa) and shear (a maximum fracture strength of 5768 N/mm(2)) when compared with homogenous designs. These results are also correlated with numerical simulation. In order to improve their biocompatibility, the scaffolds' surfaces were further modified with acetylated collagen (one of the main components in osteochondral extracellular matrix). MSC proliferation results demonstrated that incorporation of a collagen, along with biomimetically designed micro-features, can greatly enhance MSC growth after 5 days in vitro. Two weeks' chondrogenic differentiation results showed that our novel scaffolds (dubbed "key" scaffolds), both with and without surface collagen modification, displayed enhanced chondrogenesis (e.g., 130%, 114%, and 236% increases in glycosaminoglycan, type II collagen deposition, and total protein content on collagen-modified key scaffolds when compared with homogeneous controls). PMID:25088966

  13. Development of Novel Three-Dimensional Printed Scaffolds for Osteochondral Regeneration

    PubMed Central

    Holmes, Benjamin; Zhu, Wei; Li, Jiaoyan; Lee, James D.

    2015-01-01

    As modern medicine advances, various methodologies are being explored and developed in order to treat severe osteochondral defects in joints. However, it is still very challenging to cure the osteochondral defects due to their poor inherent regenerative capacity, complex stratified architecture, and disparate biomechanical properties. The objective of this study is to create novel three-dimensional (3D) printed osteochondral scaffolds with both excellent interfacial mechanical properties and biocompatibility for facilitating human bone marrow mesenchymal stem cell (MSC) growth and chondrogenic differentiation. For this purpose, we designed and 3D printed a series of innovative bi-phasic 3D models that mimic the osteochondral region of articulate joints. Our mechanical testing results showed that our bi-phasic scaffolds with key structures have enhanced mechanical characteristics in compression (a maximum Young's modulus of 31 MPa) and shear (a maximum fracture strength of 5768 N/mm2) when compared with homogenous designs. These results are also correlated with numerical simulation. In order to improve their biocompatibility, the scaffolds' surfaces were further modified with acetylated collagen (one of the main components in osteochondral extracellular matrix). MSC proliferation results demonstrated that incorporation of a collagen, along with biomimetically designed micro-features, can greatly enhance MSC growth after 5 days in vitro. Two weeks' chondrogenic differentiation results showed that our novel scaffolds (dubbed “key” scaffolds), both with and without surface collagen modification, displayed enhanced chondrogenesis (e.g., 130%, 114%, and 236% increases in glycosaminoglycan, type II collagen deposition, and total protein content on collagen-modified key scaffolds when compared with homogeneous controls). PMID:25088966

  14. Development and proof-of-concept of three-dimensional lung histology volumes

    NASA Astrophysics Data System (ADS)

    Mathew, Lindsay; Alabousi, Mostafa; Wheatley, Andrew; Aladl, Usaf; Slipetz, Deborah; Hogg, James C.; Fenster, Aaron; Parraga, Grace

    2012-03-01

    Most medical imaging is inherently three-dimensional (3D) but for validation of pathological findings, histopathology is commonly used and typically histopathology images are acquired as twodimensional slices with quantitative analysis performed in a single dimension. Histopathology is invasive, labour-intensive, and the analysis cannot be performed in real time, yet it remains the gold standard for the pathological diagnosis and validation of clinical or radiological diagnoses of disease. A major goal worldwide is to improve medical imaging resolution, sensitivity and specificity to better guide therapy and biopsy and to one day delay or replace biopsy. A key limitation however is the lack of tools to directly compare 3D macroscopic imaging acquired in patients with histopathology findings, typically provided in a single dimension (1D) or in two dimensions (2D). To directly address this, we developed methods for 2D histology slice visualization/registration to generate 3D volumes and quantified tissue components in the 3D volume for direct comparison to volumetric micro-CT and clinical CT. We used the elastase-instilled mouse emphysema lung model to evaluate our methods with murine lungs sectioned (5 μm thickness/10 μm gap) and digitized with 2μm in-plane resolution. 3D volumes were generated for wildtype and elastase mouse lung sections after semi-automated registration of all tissue slices. The 1D mean linear intercept (Lm) for wildtype (WT) (47.1 μm +/- 9.8 μm) and elastase mouse lung (64.5 μm +/- 14.0 μm) was significantly different (p<.001). We also generated 3D measurements based on tissue and airspace morphometry from the 3D volumes and all of these were significantly different (p<.0001) when comparing elastase and WT mouse lung. The ratio of the airspace-to-lung volume for the entire lung volume was also significantly and strongly correlated with Lm.

  15. [Development of three-dimensional breast cancer cell culture drug resistance model].

    PubMed

    Xu, Hong; Liu, Wei; Zhang, Xiu-Zhen; Hou, Liang; Lu, Ying-Jin; Chen, Pei-Pei; Zhang, Can; Feng, Di; Kong, Li; Wang, Xiu-Li

    2016-04-25

    The aim of the present study was to develop three-dimensional (3D) culture model, a more pathologically relevant model, of human breast cancer for drug resistance study. MCF-7 cells were embedded within collagen gel to establish 3D culture model. Cellular morphology was observed using Carmine and HE staining. Cell proliferation was evaluated by CCK-8 assay, and cell activity was detected by Live/Dead staining kit. Drug sensitivities of the 3D culture to doxorubicin, carboplatin, 5-fluorouracil were assayed and compared with those of monolayer (2D) culture. In addition, the levels of drug resistance-related genes P-glycoprotein (P-gp), mrp2 mRNA expressions were detected by real time RT-PCR. Expression level of P-gp protein was detected by Western blot. The results showed that MCF-7 cells in 3D culture formed a number of cell aggregates, and most of them displayed good cell viability. The IC50 values of doxorubicin, carboplatin, 5-fluorouracil were all increased significantly in 3D culture compared with those in 2D culture. Moreover, compared with MCF-7 cells in 2D culture, the cells in 3D culture showed increased mRNA levels of P-gp and mrp2, as well as up-regulated protein expression of P-gp. These results suggest that in vitro collagen-embedded culture system of human breast cancer cells represents an improved pathologically relevant 3D microenvironment for breast cancer cells, providing a robust tool to explore the mechanism of drug resistance of cancer cells. PMID:27108905

  16. Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos.

    PubMed

    Stegmaier, Johannes; Amat, Fernando; Lemon, William C; McDole, Katie; Wan, Yinan; Teodoro, George; Mikut, Ralf; Keller, Philipp J

    2016-01-25

    We present the Real-time Accurate Cell-shape Extractor (RACE), a high-throughput image analysis framework for automated three-dimensional cell segmentation in large-scale images. RACE is 55-330 times faster and 2-5 times more accurate than state-of-the-art methods. We demonstrate the generality of RACE by extracting cell-shape information from entire Drosophila, zebrafish, and mouse embryos imaged with confocal and light-sheet microscopes. Using RACE, we automatically reconstructed cellular-resolution tissue anisotropy maps across developing Drosophila embryos and quantified differences in cell-shape dynamics in wild-type and mutant embryos. We furthermore integrated RACE with our framework for automated cell lineaging and performed joint segmentation and cell tracking in entire Drosophila embryos. RACE processed these terabyte-sized datasets on a single computer within 1.4 days. RACE is easy to use, as it requires adjustment of only three parameters, takes full advantage of state-of-the-art multi-core processors and graphics cards, and is available as open-source software for Windows, Linux, and Mac OS. PMID:26812020

  17. Characterization of follicle and CL development in beef heifers using high resolution three-dimensional ultrasonography.

    PubMed

    Scully, Stephanie; Evans, Alex C O; Duffy, Patrick; Crowe, Mark A

    2014-02-01

    The aim was to characterize dominant follicle (DF) and CL development through the estrous cycle of cattle using three-dimensional (3D) ultrasonography while making a comparison with conventional two-dimensional (2D) B-mode ultrasound (US) and to relate the measures taken to systemic concentrations of steroid hormones and gonadotropins. After synchronization of estrus, the ovaries of crossbred beef heifers (N = 5) were assessed using daily US with a GE Voluson i US scanner until the end of the first follicle wave, then every other day until emergence of the final (ovulatory) wave, when daily US resumed until ovulation. Follicle and CL growth were recorded and mapped. Measures of diameter (2D) and volume (3D) of the DF from the first and ovulatory waves of the cycles; and CL development were captured and stored for further analysis. Blood flow to the DF and CL were assessed using 3D power Doppler US measuring vascularization index (VI; %), vascularization flow index (0/100) and flow index (0/100). Jugular blood samples were collected every 24 hours for progesterone from the first estrus until the second ovulation. Concentrations of estradiol (E2) and follicle stimulating hormone (FSH) were measured every 8 hours from estrus to second follicle wave emergence; then, E2 only was measured from final follicle wave emergence until ovulation. Data were analyzed using PROC MIXED and PROC REG in SAS. Dominant follicle blood flow tended to decrease during follicle wave emergence and DF VI increased (P < 0.05) 24 hours before ovulation after peak E2. Measures of the DF and CL volume (3D) were highly predictive of 2D diameter measures throughout the cycle (P < 0.0001). Predictive values (r(2)) for day of wave emergence and day from ovulation were similar for 2D and 3D measures; however, 2D measures had higher repeatability when compared with 3D measures. There was no relationship between CL VI and progesterone early in the cycle (r(2) = 0.12; P = 0.1); however, there was a

  18. Development and application of a three-dimensional finite element vapor intrusion model.

    PubMed

    Pennell, Kelly G; Bozkurt, Ozgur; Suuberg, Eric M

    2009-04-01

    Details of a three-dimensional finite element model of soil vapor intrusion, including the overall modeling process and the stepwise approach, are provided. The model is a quantitative modeling tool that can help guide vapor intrusion characterization efforts. It solves the soil gas continuity equation coupled with the chemical transport equation, allowing for both advective and diffusive transport. Three-dimensional pressure, velocity, and chemical concentration fields are produced from the model. Results from simulations involving common site features, such as impervious surfaces, porous foundation sub-base material, and adjacent structures are summarized herein. The results suggest that site-specific features are important to consider when characterizing vapor intrusion risks. More importantly, the results suggest that soil gas or subslab gas samples taken without proper regard for particular site features may not be suitable for evaluating vapor intrusion risks; rather, careful attention needs to be given to the many factors that affect chemical transport into and around buildings. PMID:19418819

  19. Development and Application of a Three-Dimensional Finite Element Vapor Intrusion Model

    PubMed Central

    Pennell, Kelly G.; Bozkurt, Ozgur; Suuberg, Eric M.

    2010-01-01

    Details of a three-dimensional finite element model of soil vapor intrusion, including the overall modeling process and the stepwise approach, are provided. The model is a quantitative modeling tool that can help guide vapor intrusion characterization efforts. It solves the soil gas continuity equation coupled with the chemical transport equation, allowing for both advective and diffusive transport. Three-dimensional pressure, velocity, and chemical concentration fields are produced from the model. Results from simulations involving common site features, such as impervious surfaces, porous foundation sub-base material, and adjacent structures are summarized herein. The results suggest that site-specific features are important to consider when characterizing vapor intrusion risks. More importantly, the results suggest that soil gas or subslab gas samples taken without proper regard for particular site features may not be suitable for evaluating vapor intrusion risks; rather, careful attention needs to be given to the many factors that affect chemical transport into and around buildings. PMID:19418819

  20. Three-Dimensional Upper Limb Movement Characteristics in Children with Hemiplegic Cerebral Palsy and Typically Developing Children

    ERIC Educational Resources Information Center

    Jaspers, Ellen; Desloovere, Kaat; Bruyninckx, Herman; Klingels, Katrijn; Molenaers, Guy; Aertbelien, Erwin; Van Gestel, Leen; Feys, Hilde

    2011-01-01

    The aim of this study was to measure which three-dimensional spatiotemporal and kinematic parameters differentiate upper limb movement characteristics in children with hemiplegic cerebral palsy (HCP) from those in typically developing children (TDC), during various clinically relevant tasks. We used a standardized protocol containing three reach…

  1. A New Three-Dimensional Educational Model Kit for Building DNA and RNA Molecules: Development and Evaluation

    ERIC Educational Resources Information Center

    Beltramini, Leila Maria; Araujo, Ana Paula Ulian; de Oliveira, Tales Henrique Goncalves; dos Santos Abel, Luciano Douglas; da Silva, Aparecido Rodrigues; dos Santos, Neusa Fernandes

    2006-01-01

    International specialized literature focused on research in biology education is sadly scarce, especially regarding biochemical and molecular aspects. In this light, researchers from this Centre for Structural Molecular Biotechnology developed and evaluated a three-dimensional educational model named "Building Life Molecules DNA and RNA." The…

  2. Development and application of color schlieren technique for investigation of three-dimensional concentration field

    NASA Astrophysics Data System (ADS)

    Srivastava, Atul

    2013-11-01

    The present work describes the development and application of rainbow schlieren deflectometry technique for the investigation of the three-dimensional concentration field around a crystal growing from its aqueous solution. The imaging technique employs a diverging beam of light to record the projection data of the concentration field. In contrast to the conventional schlieren methods, the present system makes use of a microscopic objective lens to act as the de-collimating lens for focusing the light beam onto the color filter to get the desired schlieren effect. In order to record the projection data of the concentration field from different view angles for tomographic reconstruction, the experiments are conducted in an octagonal growth cell. Detailed quantitative analysis of the schlieren images has then been carried out for each view angle to determine the path-integrated concentration distribution. Principles of tomography have been employed for the reconstruction of concentration field at select horizontal planes above the growing crystal. Results have been presented in the form of rainbow schlieren images of the convective field, path-averaged solute concentration distribution around the growing for each view angle and local concentration distribution at select horizontal planes above the crystal top surface. Recorded color schlieren images have been compared with those of the conventional monochrome schlieren and interferometric techniques for the same experimental conditions. The extent of color re-distribution as seen from the recorded rainbow schlieren images correlate well with the bright intensity regions of monochrome schlieren images and the extent of fringe deformation in the interferometric images. The comparison has been performed for a small as well as a comparatively larger-sized crystal. For small sized-crystal, the observed color redistribution is seen to be weak and restricted to the crystal vicinity only whereas the color changes are more

  3. Non-Fickian three-dimensional moisture absorption in polymeric composites: Development and validation of hindered diffusion model

    NASA Astrophysics Data System (ADS)

    Grace, Landon

    The importance of environmental damage consideration in the design of polymeric composite structures is discussed, with emphasis on the relationship between absorbed moisture content and material property degradation. A brief overview of existing predictive models of moisture diffusion and their limitations is presented. The three-dimensional anisotropic Fickian diffusion model is expanded to include the effects of the interaction of diffusing molecules with the chemical and physical structure of polymeric composites. The numerical solution of this novel hindered diffusion model is obtained for a three-dimensional, anisotropic domain by using a forward-time centered-space finite difference technique. The numerical solution method is verified by comparing the results to known analytical solutions of a one-dimensional, "Langmuir-type" diffusion model and for the limiting case of the three-dimensional Fickian model. The proposed three-dimensional anisotropic hindered diffusion model (3D HDM) and its one-dimensional isotropic version are successfully applied to three experimental moisture absorption data sets reconstructed from existing literature. An analytical solution based on a judicious approximation to the 3D HDM is developed in an effort to increase the utility of the model in the recovery of polymeric composite diffusion properties from experimental data. The effectiveness of the recovery of absorption properties is assessed using artificially generated "synthetic" experimental data. The anisotropic diffusivities, equilibrium moisture content (Minfinity), and molecular binding (gamma) and unbinding (beta) probabilities that govern three-dimensional hindered diffusion are recovered using least-squares regression. Using both Fickian and non-Fickian synthetic moisture absorption data, diffusivities and equilibrium moisture content are recovered with less than 1% error. Values of gamma and beta are recovered with less than 3% error in the non-Fickian diffusion case

  4. Development and analysis of three-dimensionally reinforced cellular matrix composites

    NASA Astrophysics Data System (ADS)

    Xu, Wei

    2000-10-01

    The objective of this research was to develop a new class of lightweight three-dimensional textile reinforced cellular matrix composite (3-D CMC) materials using a high-pressure foaming method. The scope of the research includes fabrication, experimental evaluation and mathematical modeling of the new composite materials. Principles of thermodynamics and transport phenomena involved in the cell nucleation and bubble growth in plastics using gas blowing agents were reviewed. The determinative factors for the foaming process were the foaming pressure, surface tension, viscous and inertial resistance forces. Foaming of epoxy resins by pressure quenching were carried out using a high-pressure vessel with a digital temperature controller and nitrogen gas as the blowing agent, at 100°C and 28--110.5 bar. The cure time was 2--2.5 hr., well before the time of gel point, 293 min., determined by means of dynamic mechanical spectroscopy. It was found that the foam density decreased monotonously and the average bubble radius slightly decreased, while the cell density increased, with the increasing foaming pressure. Cure time of 2 and 2.5 hours have no influence on the foam density, but have opposite influences on the bubble radius and cell density. Samples of 3-D woven carbon CMC materials were fabricated using the high-pressure foaming apparatus at a foaming pressure of 60 bar as the epoxy resin cured for 1.5--2 hr. at 100°C. Photomicrographs of cross-sections of the samples revealed that the epoxy resins in the epoxy pockets of the 3-D CMC samples were removed during foaming. Average density was found 1.009 g/cm 3 for TM samples and 1.076 g/cm3 for TS samples, corresponding to weight reduction of 36.92% and 28.37%, respectively, as compared with the 3-D RMC material, where TM and TS samples used 3-D woven carbon preforms of different weaving parameters. Tensile test, 3-point bending and high velocity projectile impact test were conducted to evaluate the mechanical

  5. Three-Dimensional Cell Culture Models for Infectious Disease and Drug Development

    NASA Technical Reports Server (NTRS)

    Nickerson, Cheryl A.; Honer zu Bentrup, Kerstin; Ott, C. Mark

    2005-01-01

    Three-dimensional (3-D) cell cultures hold enormous potential to advance our understanding of infectious disease and to effectively translate basic cellular research into clinical applications. Using novel NASA bioreactor technology, the rotating wall vessel (RWV), we have engineered physiologically relevant 3-D human tissue culture models for infectious disease studies. The design of the RWV is based on the understanding that organs and tissues function in a 3-D environment, and that this 3-D architecture is critical for the differentiated form and function of tissues in vivo. The RWV provides large numbers of cells which are amenable to a wide variety of experimental manipulations and provides an easy, reproducible, and cost-effective approach to enhance differentiated features of cell culture models.

  6. The Development of a Full Field Three-Dimensional Microscale Flow Measurement Technique for Application to Near Contact Line Flows

    NASA Technical Reports Server (NTRS)

    He, Qun; Hallinan, Kevin

    1996-01-01

    The goal of this paper is to present details of the development of a new three-dimensional velocity field measurement technique which can be used to provide more insight into the dynamics of thin evaporating liquid films (not limited to just low heat inputs for the heat transfer) and which also could prove useful for the study of spreading and wetting phenomena and other microscale flows.

  7. Three-dimensional sonoembryology.

    PubMed

    Benoit, Bernard; Hafner, Tomislav; Kurjak, Asim; Kupesić, Sanja; Bekavac, Ivanka; Bozek, Tomislav

    2002-01-01

    Three-dimensional (3D) ultrasound plays an important role in obstetrics, predominantly for assessing fetal anatomy. Presenting volume data in a standard anatomic orientation valuably assists both ultrasonographers and pregnant patients to recognize the anatomy more readily. Three-dimensional ultrasound is advantageous in studying normal embryonic and/or fetal development, as well as providing information for families at risk for specific congenital anomalies by confirming normality. This method offers advantages in assessing the embryo in the first trimester due to its ability to obtain multiplanar images through endovaginal volume acquisition. Rotation allows the systematic review of anatomic structures and early detection of fetal anomalies. Three-dimensional ultrasound imaging in vivo compliments pathologic and histologic evaluation of the developing embryo, giving rise to a new term: 3D sonoembryology. Rapid technological development will allow real-time 3D ultrasound to provide improved and expanded patient care on the one side, and increased knowledge of developmental anatomy on the other. PMID:11933658

  8. Introductory Molecular Orbital Theory: An Honors General Chemistry Computational Lab as Implemented Using Three-Dimensional Modeling Software

    ERIC Educational Resources Information Center

    Ruddick, Kristie R.; Parrill, Abby L.; Petersen, Richard L.

    2012-01-01

    In this study, a computational molecular orbital theory experiment was implemented in a first-semester honors general chemistry course. Students used the GAMESS (General Atomic and Molecular Electronic Structure System) quantum mechanical software (as implemented in ChemBio3D) to optimize the geometry for various small molecules. Extended Huckel…

  9. Development of three-dimensional integrated microchannel-electrode system to understand the particles' movement with electrokinetics.

    PubMed

    Yao, J; Obara, H; Sapkota, A; Takei, M

    2016-03-01

    An optical transparent 3-D Integrated Microchannel-Electrode System (3-DIMES) has been developed to understand the particles' movement with electrokinetics in the microchannel. In this system, 40 multilayered electrodes are embedded at the 2 opposite sides along the 5 square cross-sections of the microchannel by using Micro Electro-Mechanical Systems technology in order to achieve the optical transparency at the other 2 opposite sides. The concept of the 3-DIMES is that the particles are driven by electrokinetic forces which are dielectrophoretic force, thermal buoyancy, electrothermal force, and electroosmotic force in a three-dimensional scope by selecting the excitation multilayered electrodes. As a first step to understand the particles' movement driven by electrokinetic forces in high conductive fluid (phosphate buffer saline (PBS)) with the 3-DIMES, the velocities of particles' movement with one pair of the electrodes are measured three dimensionally by Particle Image Velocimetry technique in PBS; meanwhile, low conductive fluid (deionized water) is used as a reference. Then, the particles' movement driven by the electrokinetic forces is discussed theoretically to estimate dominant forces exerting on the particles. Finally, from the theoretical estimation, the particles' movement mainly results from the dominant forces which are thermal buoyancy and electrothermal force, while the velocity vortex formed at the 2 edges of the electrodes is because of the electroosmotic force. The conclusions suggest that the 3-DIMES with PBS as high conductive fluid helps to understand the three-dimensional advantageous flow structures for cell manipulation in biomedical applications. PMID:27042247

  10. Three-dimensional analysis of a developing sinkhole using GPR and dynamic cone penetrometer (DCP) testing

    NASA Astrophysics Data System (ADS)

    Brook, Martin; Gaines, Andrew; Nobes, David

    2016-04-01

    Ground penetrating radar (GPR) imaging is one of the most promising non-destructive and non-invasive methods that have offered new opportunities for mapping shallow subsurface disturbances in urbanized and industrialized zones. However, difficulties often arise in choosing the optimum antenna frequency to image subsurface features. While high frequency antennas may provide lots of detail, lower frequency antennas may provide information on larger-scale features that provide more site context. In this study, we performed GPR surveys to investigate a zone of subtle surface subsidence and pavement cracking on reclaimed land at a quayside. A 3-stage approach was used, and included: (1) a 250 MHz antenna survey to delineate the spatial extent of the area of interest; (2) a 500 MHz antenna survey to yield greater detail; and (3) direct verification of some of the key features using dynamic cone penetrometer (DCP) testing to "ground-truth" anomalies. This staged approach proved successful in imaging the sub-grade, and minor voids within approximately 2 m depth. Moreover, the quality of the data can be further improved by using GPR-Slice software in conjunction with DCP data to develop a 3D ground model. Through this approach, a combination of GPR survey and direct testing, we demonstrate the efficiency and quality of this method in mapping shallow subsidence features. An interpretation of the process-origin of the collapse feature is also proposed.

  11. Development and validation of a three-dimensional finite element model of the face.

    PubMed

    Barbarino, G G; Jabareen, M; Trzewik, J; Nkengne, A; Stamatas, G; Mazza, E

    2009-04-01

    A detailed three-dimensional finite element model of the face is presented in this paper. Bones, muscles, skin, fat, and superficial muscoloaponeurotic system were reconstructed from magnetic resonance images and modeled according to anatomical, plastic, and reconstructive surgery literature. The finite element mesh, composed of hexahedron elements, was generated through a semi-automatic procedure with an effective compromise between the detailed representation of anatomical parts and the limitation of the computational time. Nonlinear constitutive equations are implemented in the finite element model. The corresponding model parameters were selected according to previous work with mechanical measurements on soft facial tissue, or based on reasonable assumptions. Model assumptions concerning tissue geometry, interactions, mechanical properties, and the boundary conditions were validated through comparison with experiments. The calculated response of facial tissues to gravity loads, to the application of a pressure inside the oral cavity and to the application of an imposed displacement was shown to be in good agreement with the data from corresponding magnetic resonance images and holographic measurements. As a first application, gravimetric soft tissue descent was calculated from the long time action of gravity on the face in the erect position, with tissue aging leading to a loss of stiffness. Aging predictions are compared with the observations from an "aging database" with frontal photos of volunteers at different age ranges (i.e., 20-40 years and 50-70 years). PMID:19275435

  12. Development and validation of a three-dimensional ring-based structural tyre model

    NASA Astrophysics Data System (ADS)

    Kindt, P.; Sas, P.; Desmet, W.

    2009-10-01

    This paper presents a structural model for an unloaded tyre, based on a three-dimensional flexible ring on an elastic foundation. The ring represents the belt and the elastic foundation represents the tyre sidewall. The model is valid up to 300 Hz and includes a submodel of the wheel and the air cavity. This makes the model potentially suitable for the prediction of structure-borne interior noise. Unlike most ring models, which only consider in-plane modes, the presented model also predicts the modes that involve torsion of the belt in circumferential direction. The parameterization of the model, which does not require detailed knowledge of the tyre construction, is based on the main geometrical properties of the tyre and a limited modal test. Comparison between measured and calculated responses shows that the tyre-wheel model describes the dynamic behaviour with acceptable accuracy. Since the model is physical, it can be applied to describe other operational conditions such as loading and rotation.

  13. Development of AN Innovative Three-Dimensional Complete Body Screening Device - 3D-CBS

    NASA Astrophysics Data System (ADS)

    Crosetto, D. B.

    2004-07-01

    This article describes an innovative technological approach that increases the efficiency with which a large number of particles (photons) can be detected and analyzed. The three-dimensional complete body screening (3D-CBS) combines the functional imaging capability of the Positron Emission Tomography (PET) with those of the anatomical imaging capability of Computed Tomography (CT). The novel techniques provide better images in a shorter time with less radiation to the patient. A primary means of accomplishing this is the use of a larger solid angle, but this requires a new electronic technique capable of handling the increased data rate. This technique, combined with an improved and simplified detector assembly, enables executing complex real-time algorithms and allows more efficiently use of economical crystals. These are the principal features of this invention. A good synergy of advanced techniques in particle detection, together with technological progress in industry (latest FPGA technology) and simple, but cost-effective ideas provide a revolutionary invention. This technology enables over 400 times PET efficiency improvement at once compared to two to three times improvements achieved every five years during the past decades. Details of the electronics are provided, including an IBM PC board with a parallel-processing architecture implemented in FPGA, enabling the execution of a programmable complex real-time algorithm for best detection of photons.

  14. Development of a piezoelectric actuator using a three-dimensional bridge-type hinge mechanism

    NASA Astrophysics Data System (ADS)

    Kim, Jun Hyung; Kim, Soo Hyun; Kwak, Yoon Keun

    2003-05-01

    Piezostacks are capable of producing very large forces, but they provide only limited displacements. Thus, the displacement amplification mechanism is necessary to make those actuators more efficient and useful. For this purpose, a two-bridge-type flexure hinge mechanisms in series in a three-dimensional structure is proposed in this study. To show the validity of the proposed mechanism, the kinematic analysis is carried out by a matrix method and by a finite element method, and then the amplification ratio derived from both methods were compared with the simple geometric ratio, which is an order of magnitude too high. Along with this analysis, displacement and frequency experiments are also performed to verify the analysis results. The displacement errors between the matrix analysis results and experimental ones are within 10%. This indicates that the deformation of the flexure hinge in the parasitic direction should be considered for more exact estimation of amplification ratio of the bridge-type hinge mechanism. At last, the performance of this actuator is analyzed using the matrix model with respect to design parameters. The results show that the performance of a piezoactuator can be improved with the optimization of hinge parameters for each application requirement.

  15. The development and evaluation of a three-dimensional ultrasound-guided breast biopsy apparatus.

    PubMed

    Surry, K J M; Smith, W L; Campbell, L J; Mills, G R; Downey, D B; Fenster, A

    2002-09-01

    We have designed a prototype three-dimensional ultrasound guidance (3D USB) apparatus to improve the breast biopsy procedure. Features from stereotactic mammography and free-hand US-guided biopsy have been combined with 3D US imaging. This breast biopsy apparatus accurately guides a needle into position for the sampling of target tissue. We have evaluated this apparatus in three stages. First, by testing the placement accuracy of a needle in a tissue mimicking phantom. Second, with tissue mimicking phantoms that had embedded lesions for biopsy. Finally, by comparison to free-hand US-guided biopsy, using chicken breast phantoms. The first two stages of evaluation quantified the mechanical biases in the 3D USB apparatus. Compensating for these, a 96% success rate in targeting 3.2 mm "lesions" in chicken breast phantoms was achieved when using the 3D USB apparatus. The expert radiologists performing biopsies with free-hand US guidance achieved a 94.5% success rate. This has proven an equivalence between our apparatus, operated by non-experts, and free-hand biopsy performed by expert radiologists, for 3.2 mm lesions in vitro, with a 95% confidence. PMID:12270234

  16. Development of techniques required for the application of a laser to three dimensional visual sensing

    NASA Technical Reports Server (NTRS)

    Ryan, Arthur M.; Gerhardt, Lester A.

    1991-01-01

    The ongoing vision research at the Center for Intelligent Robotic Systems for Space Exploration (CIRSSE) is directed toward identifying and addressing the relevant issues involved in applying visual sensing to space assembly tasks. A considerable amount of effort has been devoted to passive sensing techniques such as using multiple cameras to identify objects in a scene. To compliment the capabilities of the passive visual system in the CIRSSE robotics testbed, research is being conducted in active sensing techniques. This report is description of the research associated with the testbed's laser scanner and its application as an active sensing device. The report is comprised of five major topics. First is a brief description of the CIRSSE visual system and a summary of the active sensing research that has been conducted up to this point. Second, some of the methods currently used to calibrate CIRSSE's laser scanner are described as well as an appraisal of the effectiveness of these methods. Third, is a discussion of how the laser scanner can be employed in concert with a camera to provide a three dimensional point estimation capability. Fourth, there is a description of methods that can be used to detect the presence of the laser beam in a cluttered camera image. Finally, there is a summary of the current state of this research and a description of research planned for the future.

  17. Three-dimensional analysis of inner ear development in human embryos.

    PubMed

    Yasuda, Megumi; Yamada, Shigehito; Uwabe, Chigako; Shiota, Kohei; Yasuda, Yoshiko

    2007-09-01

    The development of the inner ear is difficult to understand morphologically, because it proceeds in a complicated manner. Chronological 3-D reconstructed models of the inner ear primordium in human embryos (Carnegie stage 16-22) were created from the histological serial sections in the Kyoto Collection of Human Embryos using 3-D-reconstruction software on a personal computer. The endolymphatic duct begins to extend at stage 18 and continues to extend. The formation of the anterior and posterior semicircular ducts begins at stage 17. The upper lateral region of the otic pouch starts to sink inward at stage 17 and then the epithelia of both sides face and fuse with each other. The fusion disappears and the mesenchyme appears in the primordium, which looks like a hole in the otic pouch at stage 18. The mesenchyme begins to enlarge in the otic pouch at late stage 18, and continues to enlarge until the formation of the loop of semicircular ducts at stage 19. The lateral semicircular duct is formed similarly at stages 18 and 19. In the mesenchyme of the lateral semicircular duct, we found apoptotic death near the epithelium of the otic pouch at late stage 19. The cochlear duct already begins to extend at stage 16. First it extends to the opposite direction of the future cochlear rotation at stage 16 and 17, and then turns to the future rotating direction at stage 18. The cochlear duct initiates rotation at late stage 19. The cochlear duct continues to rotate and forms approximately one winding at stage 22. PMID:17867342

  18. Development of a cost effective three-dimensional posture analysis tool: validity and reliability

    PubMed Central

    2013-01-01

    Background The lack of clear understanding of the association between sitting posture and adolescent musculoskeletal pain, might reflect invalid and/or unreliable posture measurement instruments. The psychometric properties of any new measurement instrument should be demonstrated prior to use for research or clinical purposes. This paper describes psychometric testing of a new three-dimensional (3D), portable, non-invasive posture analysis tool (3D-PAT), from sequential studies using a mannequin and high school students. Methods The first study compared the 3D-(X-, Y- and Z-) coordinates of reflective markers placed on a mannequin using the 3D-PAT, and the Vicon motion analysis system. This study also tested the reliability of taking repeated measures of the 3D-coordinates of the reflective markers. The second study determined the concurrent validity and test-retest reliability of the 3D-PAT measurements of nine sitting postural angles of high school students undertaking a standard computing task. In both studies, concordance correlation coefficients and Intraclass correlation coefficients described test-retest reliability, whilst Pearson product moment correlation coefficients and Bland-Altman plots demonstrated concurrent validity. Results The 3D-PAT provides reliable and valid 3D measurements of five of the nine postural angles i.e. head flexion, neck flexion, cranio-cervical angle, trunk flexion and head lateral bending in adolescents undertaking a standard task. Conclusions The 3D-PAT is appropriate for research and clinical settings to measure five upper quadrant postural angles in three dimensions. As a measurement instrument it can provide further understanding of the relationship between sitting posture, changes to sitting posture and adolescent musculoskeletal pain. PMID:24289665

  19. 4DCapture/4DPlayer: evolving software packages for capturing, analyzing and displaying two- and three-dimensional motion data

    NASA Astrophysics Data System (ADS)

    Walton, James S.; Hodgson, Peter N.; Hallamasek, Karen G.

    2007-01-01

    In September 2002, during the 25 th Congress on High Speed Photography and Photonics, 4DVideo described a general purpose software application for the PC platform. This software (4DCapture TM) is designed to capture, analyze and display multiple video sequences. The application extracts trajectories and other kinematic information from (highspeed) video streams. Since 4DCapture TM was originally described, it has matured, and a second application (4DPlayer TM) has been introduced to support the distribution and viewing of video streams and kinematic data acquired by 4DCapture TM. 4DPlayer TM is "freeware". It may be redistributed to third parties, but it may not be modified. 4DCapture TM provides a structured environment for experimental data. Cameras are treated as transducers-that is, a source of technical data. The application provides an interface to the cameras for previewing the object-space, calibrating the images, and testing. This application can automatically track multiple landmarks seen from two or more views in two or three dimensions. Trajectories can be processed within the main application or they can be exported to a spreadsheet where they can be processed or passed along to a more sophisticated, data analysis application. 4DCapture TM also incorporates a simple animation capability and a friendly (FlowStack TM) user interface that assists the end-user to capture and treat image sequences in a natural progression. 4DCapture TM employs the AVI 2.0 standard and DirectX technology. 4DPlayer TM can be used to view multiple video sequences simultaneously and perform simple measurements of displacements and angles that vary over time. This application can detect and display the coordinates of landmarks previously identified by 4DCapture TM that have been embedded in the video streams.

  20. Three-Dimensional Environment Sustains Morphological Heterogeneity and Promotes Phenotypic Progression During Astrocyte Development.

    PubMed

    Balasubramanian, Swarnalatha; Packard, John A; Leach, Jennie B; Powell, Elizabeth M

    2016-06-01

    Astrocytes are critical for coordinating normal brain function by regulating brain metabolic homeostasis, synaptogenesis and neurotransmission, and blood-brain barrier permeability and maintenance. Dysregulation of normal astrocyte ontogeny contributes to neurodevelopmental and neurodegenerative disorders, epilepsies, and adverse responses to injury. To achieve these multiple essential roles, astrocyte phenotypes are regionally, morphologically, and functionally heterogeneous. Therefore, the best regenerative medicine strategies may require selective production of distinct astrocyte subpopulations at defined maturation levels. However, little is known about the mechanisms that direct astrocyte diversity or whether heterogeneity is represented in biomaterials. In vitro studies report lack of normal morphologies and overrepresentation of the glial scar type of reactive astrocyte morphology and expression of markers, questioning how well the in vitro astrocytes represent glia in vivo and whether in vitro tissue engineering methods are suitable for regenerative medicine applications. Our previous work with neurons suggests that the three-dimensional (3D) environment, when compared with standard two-dimensional (2D) substrate, yields cellular and molecular behaviors that more closely approximately normal ontogeny. To specifically study the effects of dimensionality, we used purified glial fibrillary acidic protein (GFAP)-expressing primary cerebral cortical astrocyte cultures from single pups and characterized the cellular maturation profiles in 2D and 3D milieu. We identified four morphological groups in vitro: round, bipolar, stellate, and putative perivascular. In the 3D hydrogel culture environment, postnatal astrocytes transitioned from a population of nearly all round cells and very few bipolar cells toward a population with significant fractions of round, stellate, and putative perivascular cells within a few days, following the in vivo ontogeny. In 2D, however

  1. Two- and Three-Dimensional Depiction of Subsurface Geology Using Commercial Software for Support of Groundwater Contaminant Fate and Transport Analysis - 13345

    SciTech Connect

    Ivarson, Kristine A.; Miller, Charles W.; Arola, Craig C.

    2013-07-01

    Groundwater contamination by hexavalent chromium and other nuclear reactor operation-related contaminants has resulted in the need for groundwater remedial actions within the Hanford Site reactor areas (the Hanford Site 100 Area). The large geographic extent of the resultant contaminant plumes requires an extensive level of understanding of the aquifer structure, characteristics, and configuration to support assessment and design of remedial alternatives within the former 100-D, 100-H, and 100-K reactor areas. The authors have prepared two- and three-dimensional depictions of the key subsurface geologic structures at two Hanford Site reactor operable units (100-K and 100-D/H). These depictions, prepared using commercial-off-the-shelf (COTS) visualization software, provide a basis for expanding the understanding of groundwater contaminant migration pathways, including identification of geologically-defined preferential groundwater flow pathways. These identified preferential flow pathways support the conceptual site model and help explain both historical and current contaminant distribution and transport. (authors)

  2. Development of a multi-grid FDTD code for three-dimensional simulation of large microwave sintering experiments

    SciTech Connect

    White, M.J.; Iskander, M.F.; Kimrey, H.D.

    1996-12-31

    The Finite-Difference Time-Domain (FDTD) code available at the University of Utah has been used to simulate sintering of ceramics in single and multimode cavities, and many useful results have been reported in literature. More detailed and accurate results, specifically around and including the ceramic sample, are often desired to help evaluate the adequacy of the heating procedure. In electrically large multimode cavities, however, computer memory requirements limit the number of the mathematical cells, and the desired resolution is impractical to achieve due to limited computer resources. Therefore, an FDTD algorithm which incorporates multiple-grid regions with variable-grid sizes is required to adequately perform the desired simulations. In this paper the authors describe the development of a three-dimensional multi-grid FDTD code to help focus a large number of cells around the desired region. Test geometries were solved using a uniform-grid and the developed multi-grid code to help validate the results from the developed code. Results from these comparisons, as well as the results of comparisons between the developed FDTD code and other available variable-grid codes are presented. In addition, results from the simulation of realistic microwave sintering experiments showed improved resolution in critical sites inside the three-dimensional sintering cavity. With the validation of the FDTD code, simulations were performed for electrically large, multimode, microwave sintering cavities to fully demonstrate the advantages of the developed multi-grid FDTD code.

  3. Non-destructive and three-dimensional measurement of local strain development during tensile deformation in an aluminium alloy

    NASA Astrophysics Data System (ADS)

    Kobayashi, M.; Miura, H.; Toda, H.

    2015-08-01

    Anisotropy of mechanical responses depending on crystallographic orientation causes inhomogeneous deformation on the mesoscopic scale (grain size scale). Investigation of the local plastic strain development is important for discussing recrystallization mechanisms, because the sites with higher local plastic strain may act as potential nucleation sites for recrystallization. Recently, high-resolution X-ray tomography, which is non-destructive inspection method, has been utilized for observation of the materials structure. In synchrotron radiation X-ray tomography, more than 10,000 microstructural features, like precipitates, dispersions, compounds and hydrogen pores, can be observed in aluminium alloys. We have proposed employing these microstructural features as marker gauges to measure local strains, and then have developed a method to calculate the three-dimensional strain distribution by tracking the microstructural features. In this study, we report the development of local plastic strain as a function of the grain microstructure in an aluminium alloy by means of this three-dimensional strain measurement technique. Strongly heterogeneous strain development was observed during tensile loading to 30%. In other words, some parts of the sample deform little whereas another deforms a lot. However, strain in the whole specimen was keeping harmony. Comparing the microstructure with the strain concentration that is obtained by this method has a potential to reveal potential nucleation sites of recrystallization.

  4. Use of the surface-based registration function of computer-aided design/computer-aided manufacturing software in medical simulation software for three-dimensional simulation of orthognathic surgery

    PubMed Central

    Lee, Jae-Won; Kim, Moon-Key

    2013-01-01

    Three-dimensional (3D) computed tomography image models are helpful in reproducing the maxillofacial area; however, they do not necessarily provide an accurate representation of dental occlusion and the state of the teeth. Recent efforts have focused on improvement of dental imaging by replacement of computed tomography with other detailed digital images. Unfortunately, despite the advantages of medical simulation software in dentofacial analysis, diagnosis, and surgical simulation, it lacks adequate registration tools. Following up on our previous report on orthognathic simulation surgery using computer-aided design/computer-aided manufacturing (CAD/CAM) software, we recently used the registration functions of a CAD/CAM platform in conjunction with surgical simulation software. Therefore, we would like to introduce a new technique, which involves use of the registration functions of CAD/CAM software followed by transfer of the images into medical simulation software. This technique may be applicable when using various registration function tools from different software platforms. PMID:24471043

  5. Use of the surface-based registration function of computer-aided design/computer-aided manufacturing software in medical simulation software for three-dimensional simulation of orthognathic surgery.

    PubMed

    Kang, Sang-Hoon; Lee, Jae-Won; Kim, Moon-Key

    2013-08-01

    Three-dimensional (3D) computed tomography image models are helpful in reproducing the maxillofacial area; however, they do not necessarily provide an accurate representation of dental occlusion and the state of the teeth. Recent efforts have focused on improvement of dental imaging by replacement of computed tomography with other detailed digital images. Unfortunately, despite the advantages of medical simulation software in dentofacial analysis, diagnosis, and surgical simulation, it lacks adequate registration tools. Following up on our previous report on orthognathic simulation surgery using computer-aided design/computer-aided manufacturing (CAD/CAM) software, we recently used the registration functions of a CAD/CAM platform in conjunction with surgical simulation software. Therefore, we would like to introduce a new technique, which involves use of the registration functions of CAD/CAM software followed by transfer of the images into medical simulation software. This technique may be applicable when using various registration function tools from different software platforms. PMID:24471043

  6. Status report on the development of a three-dimensional conceptual model for the Hanford Site unconfined aquifer system

    SciTech Connect

    Thorne, P.D.; Chamness, M.A.

    1992-11-01

    This report presents the status of development of a three-dimensional conceptual model for the unconfined aquifer system at Hanford. A conceptual model is needed to support development of a realistic three-dimensional numerical model for predicting ground-water flow and the transport of contaminants. The report focuses on developing a hydrogeologic framework, assessing available hydraulic property data, describing flow-system boundaries, and evaluating areal recharge and leakage. Geologic descriptions of samples obtained during well drilling were used to prepare cross sections that correlate relatively continuous layers. The layers were defined based on textural differences that are expected to reflect differences in hydraulic properties. Assigning hydraulic properties to the layers is a critical part of the conceptual model. Available hydraulic property data for the study area were compiled and were correlated with the geologic layers where possible. Flow-system boundaries are present within the study area at basalt outcrops and at the Columbia River. Boundary conditions have been evaluated for these areas. Available estimates of areal recharge from precipitation were compiled.

  7. Three-Dimensional Imaging of the Developing Vasculature within Stem Cell-Seeded Scaffolds Cultured in ovo

    PubMed Central

    Woloszyk, Anna; Liccardo, Davide; Mitsiadis, Thimios A.

    2016-01-01

    Successful tissue engineering requires functional vascularization of the three-dimensional constructs with the aim to serve as implants for tissue replacement and regeneration. The survival of the implant is only possible if the supply of oxygen and nutrients by developing capillaries from the host is established. The chorioallantoic membrane (CAM) assay is a valuable tool to study the ingrowth and distribution of vessels into scaffolds composed by appropriate biomaterials and stem cell populations that are used in cell-based regenerative approaches. The developing vasculature of chicken embryos within cell-seeded scaffolds can be visualized with microcomputed tomography after intravenous injection of MicroFil®, which is a radiopaque contrast agent. Here, we provide a step-by-step protocol for the seeding of stem cells into silk fibroin scaffolds, the CAM culture conditions, the procedure of MicroFil® perfusion, and finally the microcomputed tomography scanning. Three-dimensional imaging of the vascularized tissue engineered constructs provides an important analytical tool for studying the potential of cell seeded scaffolds to attract vessels and form vascular networks, as well as for analyzing the number, density, length, branching, and diameter of vessels. This in ovo method can greatly help to screen implants that will be used for tissue regeneration purposes before their in vivo testing, thereby reducing the amount of animals needed for pre-clinical studies. PMID:27148081

  8. Three Dimensional Dirac Semimetals

    NASA Astrophysics Data System (ADS)

    Zaheer, Saad

    2014-03-01

    Dirac points on the Fermi surface of two dimensional graphene are responsible for its unique electronic behavior. One can ask whether any three dimensional materials support similar pseudorelativistic physics in their bulk electronic spectra. This possibility has been investigated theoretically and is now supported by two successful experimental demonstrations reported during the last year. In this talk, I will summarize the various ways in which Dirac semimetals can be realized in three dimensions with primary focus on a specific theory developed on the basis of representations of crystal spacegroups. A three dimensional Dirac (Weyl) semimetal can appear in the presence (absence) of inversion symmetry by tuning parameters to the phase boundary separating a bulk insulating and a topological insulating phase. More generally, we find that specific rules governing crystal symmetry representations of electrons with spin lead to robust Dirac points at high symmetry points in the Brillouin zone. Combining these rules with microscopic considerations identifies six candidate Dirac semimetals. Another method towards engineering Dirac semimetals involves combining crystal symmetry and band inversion. Several candidate materials have been proposed utilizing this mechanism and one of the candidates has been successfully demonstrated as a Dirac semimetal in two independent experiments. Work carried out in collaboration with: Julia A. Steinberg, Steve M. Young, J.C.Y. Teo, C.L. Kane, E.J. Mele and Andrew M. Rappe.

  9. Development of an unstructured solution adaptive method for the quasi-three-dimensional Euler and Navier-Stokes equations

    NASA Technical Reports Server (NTRS)

    Jiang, Yi-Tsann; Usab, William J., Jr.

    1993-01-01

    A general solution adaptive scheme based on a remeshing technique is developed for solving the two-dimensional and quasi-three-dimensional Euler and Favre-averaged Navier-Stokes equations. The numerical scheme is formulated on an unstructured triangular mesh utilizing an edge-based pointer system which defines the edge connectivity of the mesh structure. Jameson's four-stage hybrid Runge-Kutta scheme is used to march the solution in time. The convergence rate is enhanced through the use of local time stepping and implicit residual averaging. As the solution evolves, the mesh is regenerated adaptively using flow field information. Mesh adaptation parameters are evaluated such that an estimated local numerical error is equally distributed over the whole domain. For inviscid flows, the present approach generates a complete unstructured triangular mesh using the advancing front method. For turbulent flows, the approach combines a local highly stretched structured triangular mesh in the boundary layer region with an unstructured mesh in the remaining regions to efficiently resolve the important flow features. One-equation and two-equation turbulence models are incorporated into the present unstructured approach. Results are presented for a wide range of flow problems including two-dimensional multi-element airfoils, two-dimensional cascades, and quasi-three-dimensional cascades. This approach is shown to gain flow resolution in the refined regions while achieving a great reduction in the computational effort and storage requirements since solution points are not wasted in regions where they are not required.

  10. Development of an unstructured solution adaptive method for the quasi-three-dimensional Euler and Navier-Stokes equations

    NASA Technical Reports Server (NTRS)

    Jiang, Yi-Tsann

    1993-01-01

    A general solution adaptive scheme-based on a remeshing technique is developed for solving the two-dimensional and quasi-three-dimensional Euler and Favre-averaged Navier-Stokes equations. The numerical scheme is formulated on an unstructured triangular mesh utilizing an edge-based pointer system which defines the edge connectivity of the mesh structure. Jameson's four-stage hybrid Runge-Kutta scheme is used to march the solution in time. The convergence rate is enhanced through the use of local time stepping and implicit residual averaging. As the solution evolves, the mesh is regenerated adaptively using flow field information. Mesh adaptation parameters are evaluated such that an estimated local numerical error is equally distributed over the whole domain. For inviscid flows, the present approach generates a complete unstructured triangular mesh using the advancing front method. For turbulent flows, the approach combines a local highly stretched structured triangular mesh in the boundary layer region with an unstructured mesh in the remaining regions to efficiently resolve the important flow features. One-equation and two-equation turbulence models are incorporated into the present unstructured approach. Results are presented for a wide range of flow problems including two-dimensional multi-element airfoils, two-dimensional cascades, and quasi-three-dimensional cascades. This approach is shown to gain flow resolution in the refined regions while achieving a great reduction in the computational effort and storage requirements since solution points are not wasted in regions where they are not required.

  11. Development of three-dimensional printing system for magnetic elastomer with control of magnetic anisotropy in the structure

    NASA Astrophysics Data System (ADS)

    Tsumori, Fujio; Kawanishi, Hidenori; Kudo, Kentaro; Osada, Toshiko; Miura, Hideshi

    2016-06-01

    In this paper, we report on a new system of three-dimensional (3D) printing for a magnetic elastomer that contains magnetic particles. Not only can we fabricate a three-dimensional structure, but we can also control the magnetically anisotropic property of each position in the structure using the present technique. Our new system employed photocurable poly(dimethylsiloxane) (PDMS) as the base material so that a method similar to a conventional 3D printing process with photolithography can be used. A magnetic powder was mixed with photocurable PDMS, and particle chain clusters were obtained by applying a magnetic field during the curing process. These chain clusters provide an anisotropic property in each part of the printed structure. We show some results of preliminary experiments and 3D printed samples in this paper. If the fabricated structure was placed under an applied magnetic field, each chain cluster will cause the rotational moment to be along the magnetic flux line, which can deform a soft matrix body. This deformation can be used as a magnetic actuator for the structure. Variable deformable structures could be developed using the present method.

  12. The HYDRUS Software Package for Simulating Two- and Three-Dimensional Movement of Water, Heat, and Multiple Solutes in Variably-Saturated Media, User Manual, Version 1.0

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This report documents version 1.0 of the Graphical User Interface of HYDRUS, a software package for simulating water, heat, and solute movement in two- and three- dimensional variably saturated media. The software package consists of a computational computer program, and an interactive graphics-base...

  13. The HYDRUS Software Package for Simulating the Two- and Three-Dimensional Movement of Water, Heat, and Multiple Solutes in Variably-Saturated Media; Technical Manual, Version 1.0

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This report documents version 1.0 of HYDRUS, a general software package for simulating water, heat, and solute movement in two- and three-dimensional variably saturated media. The software package consists of a computation computer program, and an interactive graphics-based user interface. The HYDRU...

  14. Progress on the development of a three-dimensional capability for simulating large-scale complex geologic processes

    SciTech Connect

    Argueello, J.G.; Stone, C.M.; Fossum, A.F.

    1998-02-01

    Significant progress has been made in developing a three-dimensional capability for predicting the mechanical response of rock over spatial and time scales of geologic interest to the Oil and Gas industry. An Advanced Computational Technology Initiative (ACTI) initiated three years ago to achieve such a computational technology breakthrough has made significant progress towards its goal by adapting and improving the unique advanced quasistatic finite element technology developed by Sandia National Laboratories to the mechanics applications important to exploration and production (E and P). This capability now gives the industry a powerful tool to help reduce risk on prospects, improve pre-project initial reserve estimates, and lower operating costs. Progress to date on this program is reported herein by presenting and discussing the enhancements and adaptations that have been made to the technology, with specific examples to illustrate their use on large E and P geomechanics problems.

  15. Developments in three-dimensional cell culture technology aimed at improving the accuracy of in vitro analyses.

    PubMed

    Maltman, Daniel J; Przyborski, Stefan A

    2010-08-01

    Drug discovery programmes require accurate in vitro systems for drug screening and testing. Traditional cell culture makes use of 2D (two-dimensional) surfaces for ex vivo cell growth. In such environments, cells are forced to adopt unnatural characteristics, including aberrant flattened morphologies. Therefore there is a strong demand for new cell culture platforms which allow cells to grow and respond to their environment in a more realistic manner. The development of 3D (three-dimensional) alternative substrates for in vitro cell growth has received much attention, and it is widely acknowledged that 3D cell growth is likely to more accurately reflect the in vivo tissue environments from which cultured cells are derived. 3D cell growth techniques promise numerous advantages over 2D culture, including enhanced proliferation and differentiation of stem cells. The present review focuses on the development of scaffold technologies for 3D cell culture. PMID:20659006

  16. Algorithm and code development for unsteady three-dimensional Navier-Stokes equations

    NASA Technical Reports Server (NTRS)

    Obayashi, Shigeru

    1993-01-01

    In the last two decades, there have been extensive developments in computational aerodynamics, which constitutes a major part of the general area of computational fluid dynamics. Such developments are essential to advance the understanding of the physics of complex flows, to complement expensive wind-tunnel tests, and to reduce the overall design cost of an aircraft, particularly in the area of aeroelasticity. Aeroelasticity plays an important role in the design and development of aircraft, particularly modern aircraft, which tend to be more flexible. Several phenomena that can be dangerous and limit the performance of an aircraft occur because of the interaction of the flow with flexible components. For example, an aircraft with highly swept wings may experience vortex-induced aeroelastic oscillations. Also, undesirable aeroelastic phenomena due to the presence and movement of shock waves occur in the transonic range. Aeroelastically critical phenomena, such as a low transonic flutter speed, have been known to occur through limited wind-tunnel tests and flight tests. Aeroelastic tests require extensive cost and risk. An aeroelastic wind-tunnel experiment is an order of magnitude more expensive than a parallel experiment involving only aerodynamics. By complementing the wind-tunnel experiments with numerical simulations the overall cost of the development of aircraft can be considerably reduced. In order to accurately compute aeroelastic phenomenon it is necessary to solve the unsteady Euler/Navier-Stokes equations simultaneously with the structural equations of motion. These equations accurately describe the flow phenomena for aeroelastic applications. At Ames a code, ENSAERO, is being developed for computing the unsteady aerodynamics and aeroelasticity of aircraft and it solves the Euler/Navier-Stokes equations. The purpose of this contract is to continue the algorithm enhancements of ENSAERO and to apply the code to complicated geometries. During the last year

  17. Development of three-dimensional state-space wake theory and application in dynamic ground effect

    NASA Astrophysics Data System (ADS)

    Yu, Ke

    In topics of rotorcraft wake analysis, state-space wake theory has a recognized reputation for advantages in real-time simulation, preliminary design and eigenvalue analysis. Developments in the past decades greatly improved range of validity and accuracy of the state-space modeling approach. This work focuses on further improvement of the state-space wake theory and applications in representing dynamic ground effect. Extended state-space model is developed to represent non-zero mass flux on rotor disk. Its instant practical application, representing ground effect with a mass source ground rotor, is evaluated in both steady and dynamic aspects. Investigations of partial ground effect simulation by state-space model are carried out in different rotor configurations. Additional work is done in improving simulation efficiency of practical application of state-space modeling.

  18. Development of a Three Dimensional Wireless Sensor Network for Terrain-Climate Research in Remote Mountainous Environments

    NASA Astrophysics Data System (ADS)

    Kavanagh, K.; Davis, A.; Gessler, P.; Hess, H.; Holden, Z.; Link, T. E.; Newingham, B. A.; Smith, A. M.; Robinson, P.

    2011-12-01

    Developing sensor networks that are robust enough to perform in the world's remote regions is critical since these regions serve as important benchmarks compared to human-dominated areas. Paradoxically, the factors that make these remote, natural sites challenging for sensor networking are often what make them indispensable for climate change research. We aim to overcome these challenges by developing a three-dimensional sensor network arrayed across a topoclimatic gradient (1100-1800 meters) in a wilderness area in central Idaho. Development of this sensor array builds upon advances in sensing, networking, and power supply technologies coupled with experiences of the multidisciplinary investigators in conducting research in remote mountainous locations. The proposed gradient monitoring network will provide near real-time data from a three-dimensional (3-D) array of sensors measuring biophysical parameters used in ecosystem process models. The network will monitor atmospheric carbon dioxide concentration, humidity, air and soil temperature, soil water content, precipitation, incoming and outgoing shortwave and longwave radiation, snow depth, wind speed and direction, tree stem growth and leaf wetness at time intervals ranging from seconds to days. The long-term goal of this project is to realize a transformative integration of smart sensor networks adaptively communicating data in real-time to ultimately achieve a 3-D visualization of ecosystem processes within remote mountainous regions. Process models will be the interface between the visualization platforms and the sensor network. This will allow us to better predict how non-human dominated terrestrial and aquatic ecosystems function and respond to climate dynamics. Access to the data will be ensured as part of the Northwest Knowledge Network being developed at the University of Idaho, through ongoing Idaho NSF-funded cyber infrastructure initiatives, and existing data management systems funded by NSF, such as

  19. Mean flow development of a longitudinal vortex embedded in an attached, three-dimensional, turbulent boundary layer

    SciTech Connect

    Shizawa, T.; Eaton, J.K.

    1990-12-31

    The interaction of a longitudinal vortex with a pressure-driven, three dimensional turbulent boundary layer was investigated experimentally. The vortex was attenuated much more rapidly in the three dimensional layer than in a two-dimensional boundary layer. The persistence for the vortex-induced perturbation was strongly dependent on the sign of the vortex.

  20. Three-dimensional seismic survey applied to field development in Williston basin

    SciTech Connect

    Robinson, G.C.; Baixas, F.; Hooyman, P.J.

    1983-03-01

    The Medicine Lake field of Sheridan County, Montana, was discovered in March 1979. In October 1981, a mini-3-D seismic survey covering 2.5 mi/sup 2/ (6.2 km/sup 2/) was acquired over this field in order to facilitate development drilling by delineating the field's reservoirs and obtaining a more accurate image of the subsurface structure. A multiline system, consisting of 240 geophone groups distributed on 8 lines, was used. The energy source was shothole dynamite using 5 lbs (2.3 kg) charges at 250 ft (46 m). The shotpoints were arranged in a cross pattern with extra shotpoints included to provide necessary control on the weathered zone. The average subsurface coverage was 600%, with CDP bins 165 ft (50 m) square. Prior to the actual shooting, a computer simulation of the resulting fold was performed to verify the field geometry. The entire survey was recorded in one day with no movement of the geophones, thus minimizing costs. The objective of the stratigraphic interpretation was to outline zones of possible porosity, particularly in the Madison and Red River intervals. The horizontal and vertical inverted sections were particularly useful for ascertaining the location and lateral extent of those anomalous zones. The results correlate well with known production, and should aid in the location of future development wells.

  1. Developing High-Frequency Quantitative Ultrasound Techniques to Characterize Three-Dimensional Engineered Tissues

    NASA Astrophysics Data System (ADS)

    Mercado, Karla Patricia E.

    Tissue engineering holds great promise for the repair or replacement of native tissues and organs. Further advancements in the fabrication of functional engineered tissues are partly dependent on developing new and improved technologies to monitor the properties of engineered tissues volumetrically, quantitatively, noninvasively, and nondestructively over time. Currently, engineered tissues are evaluated during fabrication using histology, biochemical assays, and direct mechanical tests. However, these techniques destroy tissue samples and, therefore, lack the capability for real-time, longitudinal monitoring. The research reported in this thesis developed nondestructive, noninvasive approaches to characterize the structural, biological, and mechanical properties of 3-D engineered tissues using high-frequency quantitative ultrasound and elastography technologies. A quantitative ultrasound technique, using a system-independent parameter known as the integrated backscatter coefficient (IBC), was employed to visualize and quantify structural properties of engineered tissues. Specifically, the IBC was demonstrated to estimate cell concentration and quantitatively detect differences in the microstructure of 3-D collagen hydrogels. Additionally, the feasibility of an ultrasound elastography technique called Single Tracking Location Acoustic Radiation Force Impulse (STL-ARFI) imaging was demonstrated for estimating the shear moduli of 3-D engineered tissues. High-frequency ultrasound techniques can be easily integrated into sterile environments necessary for tissue engineering. Furthermore, these high-frequency quantitative ultrasound techniques can enable noninvasive, volumetric characterization of the structural, biological, and mechanical properties of engineered tissues during fabrication and post-implantation.

  2. Development of a compression molding process for three-dimensional tailored free-form glass optics

    NASA Astrophysics Data System (ADS)

    Yi, Allen Y.; Huang, Chunning; Klocke, Fritz; Brecher, Christian; Pongs, Guido; Winterschladen, Markus; Demmer, Axel; Lange, Sven; Bergs, Thomas; Merz, Michael; Niehaus, Frank

    2006-09-01

    Because of the limitation of manufacturing capability, free-form glass optics cannot be produced in a large volume using traditional processes such as grinding, lapping, and polishing. Very recently compression molding of glass optics became a viable manufacturing process for the high-volume production of precision glass optical components. An ultraprecision diamond-turning machine retrofitted with a fast tool servo was used to fabricate a free-form optical mold on a nickel-plated surface. A nonuniform rational B-spline trajectory generator was developed to calculate the computer numerical control machine tool path. A specially formulated glass with low transition temperature (Tg) was used, since the nickel alloy mold cannot withstand the high temperatures required for regular optical glasses. We describe the details of this process, from optical surface geometry, mold making, molding experiment, to lens measurement.

  3. Development of a compression molding process for three-dimensional tailored free-form glass optics.

    PubMed

    Yi, Allen Y; Huang, Chunning; Klocke, Fritz; Brecher, Christian; Pongs, Guido; Winterschladen, Markus; Demmer, Axel; Lange, Sven; Bergs, Thomas; Merz, Michael; Niehaus, Frank

    2006-09-01

    Because of the limitation of manufacturing capability, free-form glass optics cannot be produced in a large volume using traditional processes such as grinding, lapping, and polishing. Very recently compression molding of glass optics became a viable manufacturing process for the high-volume production of precision glass optical components. An ultraprecision diamond-turning machine retrofitted with a fast tool servo was used to fabricate a free-form optical mold on a nickel-plated surface. A nonuniform rational B-spline trajectory generator was developed to calculate the computer numerical control machine tool path. A specially formulated glass with low transition temperature (Tg) was used, since the nickel alloy mold cannot withstand the high temperatures required for regular optical glasses. We describe the details of this process, from optical surface geometry, mold making, molding experiment, to lens measurement. PMID:16912790

  4. Systems in development: motor skill acquisition facilitates three-dimensional object completion.

    PubMed

    Soska, Kasey C; Adolph, Karen E; Johnson, Scott P

    2010-01-01

    How do infants learn to perceive the backs of objects that they see only from a limited viewpoint? Infants' 3-dimensional object completion abilities emerge in conjunction with developing motor skills--independent sitting and visual-manual exploration. Infants at 4.5 to 7.5 months of age (n = 28) were habituated to a limited-view object and tested with volumetrically complete and incomplete (hollow) versions of the same object. Parents reported infants' sitting experience, and infants' visual-manual exploration of objects was observed in a structured play session. Infants' self-sitting experience and visual-manual exploratory skills predicted looking at the novel, incomplete object on the habituation task. Further analyses revealed that self-sitting facilitated infants' visual inspection of objects while they manipulated them. The results are framed within a developmental systems approach, wherein infants' sitting skill, multimodal object exploration, and object knowledge are linked in developmental time. PMID:20053012

  5. Three-dimensional seismic survey applied to field development in Williston basin

    SciTech Connect

    Robinson, G.C.; Baixas, F.; Hooyman, P.J.

    1983-08-01

    The Medicine Lake field of Sheridan County, Montana, was discovered in March 1979 by the drilling of a seismic anomaly. Production is obtained from Paleozoic carbonate reservoirs ranging in age from Ordovician to Mississippian. Cumulative production from the field, as of March 1982, is 1.2 million bbl. A mini-3D seismic survey was acquired in October 1981 to facilitate development drilling. The survey covered 2.4 mi/sup 2/ (6.2 km/sup 2/), encompassing the field's seven producing wells and two dry holes. The purpose of this survey was to provide an accurate image of the subsurface structure and delineate the extent of the producing formations. The areal coverage and improved subsurface imaging of the 3D survey provided a detailed view of the Medicine Lake anomaly. The seismic data reveals that the structure results from a local basement (Precambrian) high. Mapping of the Ordovician Winnipeg Formation revealed a domal structure covering approximately 0.6 mi/sup 2/ (1.5 km/sup 2/) with closure in excess of 180 ft (55 m). Although all producing wells are located on the Medicine Lake structure, stratigraphic variations within the reservoirs may localized production within structural closure. Porosity in several producing formations is diagenetic; prediction of reservoir trends from well data alone is difficult. Inversion and interactive modeling were used to study these stratigraphic variations. A correlation between relative acoustic impedance and porosity was established for several formations. Vertical and horizontal relative acoustic impedance sections were then employed to locate zones of possible porosity. This information, combined with the improved structural data, should aid in further development of the Medicine lake field.

  6. The development and investigation of a prototype three-dimensional compensator for whole brain radiation therapy

    NASA Astrophysics Data System (ADS)

    Keall, Paul; Arief, Isti; Shamas, Sofia; Weiss, Elisabeth; Castle, Steven

    2008-05-01

    Whole brain radiation therapy (WBRT) is the standard treatment for patients with brain metastases, and is often used in conjunction with stereotactic radiotherapy for patients with a limited number of brain metastases, as well as prophylactic cranial irradiation. The use of open fields (conventionally used for WBRT) leads to higher doses to the brain periphery if dose is prescribed to the brain center at the largest lateral radius. These dose variations potentially compromise treatment efficacy and translate to increased side effects. The goal of this research was to design and construct a 3D 'brain wedge' to compensate dose heterogeneities in WBRT. Radiation transport theory was invoked to calculate the desired shape of a wedge to achieve a uniform dose distribution at the sagittal plane for an ellipsoid irradiated medium. The calculations yielded a smooth 3D wedge design to account for the missing tissue at the peripheral areas of the brain. A wedge was machined based on the calculation results. Three ellipsoid phantoms, spanning the mean and ± two standard deviations from the mean cranial dimensions were constructed, representing 95% of the adult population. Film was placed at the sagittal plane for each of the three phantoms and irradiated with 6 MV photons, with the wedge in place. Sagittal plane isodose plots for the three phantoms demonstrated the feasibility of this wedge to create a homogeneous distribution with similar results observed for the three phantom sizes, indicating that a single wedge may be sufficient to cover 95% of the adult population. The sagittal dose is a reasonable estimate of the off-axis dose for whole brain radiation therapy. Comparing the dose with and without the wedge the average minimum dose was higher (90% versus 86%), the maximum dose was lower (107% versus 113%) and the dose variation was lower (one standard deviation 2.7% versus 4.6%). In summary, a simple and effective 3D wedge for whole brain radiotherapy has been developed

  7. Development of three-dimensional tissue engineered bone-oral mucosal composite models.

    PubMed

    Almela, Thafar; Brook, Ian M; Moharamzadeh, Keyvan

    2016-04-01

    Tissue engineering of bone and oral mucosa have been extensively studied independently. The aim of this study was to develop and investigate a novel combination of bone and oral mucosa in a single 3D in vitro composite tissue mimicking the natural structure of alveolar bone with an overlying oral mucosa. Rat osteosarcoma (ROS) cells were seeded into a hydroxyapatite/tri-calcium phosphate scaffold and bone constructs were cultured in a spinner bioreactor for 3 months. An engineered oral mucosa was fabricated by air/liquid interface culture of immortalized OKF6/TERET-2 oral keratinocytes on collagen gel-embedded fibroblasts. EOM was incorporated into the engineered bone using a tissue adhesive and further cultured prior to qualitative and quantitative assessments. Presto Blue assay revealed that ROS cells remained vital throughout the experiment. The histological and scanning electron microscope examinations showed that the cells proliferated and densely populated the scaffold construct. Micro computed tomography (micro-CT) scanning revealed an increase in closed porosity and a decrease in open and total porosity at the end of the culture period. Histological examination of bone-oral mucosa model showed a relatively differentiated parakeratinized epithelium, evenly distributed fibroblasts in the connective tissue layer and widely spread ROS cells within the bone scaffold. The feasibility of fabricating a novel bone-oral mucosa model using cell lines is demonstrated. Generating human 'normal' cell-based models with further characterization is required to optimize the model for in vitro and in vivo applications. PMID:26883949

  8. Three-dimensional evaluation of the mandibular third molars’ development in unilateral crossbite patients: A cone beam computed tomography study

    PubMed Central

    Halicioglu, Koray; Celikoglu, Mevlut; Buyuk, Suleyman Kutalmis; Sekerci, Ahmet Ercan; Ucar, Faruk Izzet; Yavuz, Ibrahim

    2014-01-01

    Objectives: The aim was to investigate mandibular third molar (3M)'s maturation in the crossbite and normal sides by two- and three-dimensional analyses using cone beam computed tomography (CBCT). Materials and Methods: A retrospective study was performed using CBCT of 25 patients (16 females and 9 males; mean age: 16.8 ± 2.9 years) with unilateral posterior crossbite. The formation stages and the volume of the mandibular 3Ms were evaluated by means of CBCT data of the patients without knowing the crossbite side of the patients. Results: Statistically no significant differences were found in the development of the 3Ms between the crossbite and the control sides, whereas the volume of 3M was found to be less in the crossbite side than in the normal side (P = 0.021). Conclusions: A volume of 3M was found to be less in the crossbite side than in the normal side. PMID:25202221

  9. Numerical Simulation of Three-Dimensional Dendritic Growth of Alloy: Part I—Model Development and Test

    NASA Astrophysics Data System (ADS)

    Wang, Weiling; Luo, Sen; Zhu, Miaoyong

    2016-03-01

    To improve the computational efficiency of the three-dimensional (3D) cellular-automaton-finite-volume-method (CA-FVM) model for describing the dendritic growth of alloy, the block-correction technique (BCT) and the parallel computation approach are introduced. Accordingly, a serial of investigations on the efficiency of the optimized codes in dealing with the designed cases for the melt flow and the heat transfer problems is carried out. Moreover, the accuracy of the present codes is evaluated by the comparisons between the solution to the melt flow and the heat transfer problems and the results from analytical equations and the commercial software. Additionally, the capability of the present CA model is evaluated by comparing the steady growth parameters of the equiaxed dendritic tip and the morphology and the secondary dendrite arm spacing (SDAS) of columnar dendrites with the LGK analytical model and the experimental results of the unidirectional solidification of high-carbon steels. The results show that with the introduction of the 3D BCT, the iteration process of the serial tri-diagonal matrix algorithm (TDMA) code changes from the fluctuation type to the smooth one, and thus, the computational cost is reduced significantly. Moreover, the parallel Jacobi code with one two-dimensional (2D) iteration in 3D BCT is proved to be the most efficient one among the codes compiled in the present work, and therefore, accordingly it is employed to simulate the 3D dendritic growth of alloys. The calculated velocity distribution and temperature variation agree well with the results from the analytical equations and the commercial software. The predicted steady tip velocities agree with the LGK analytical model as the undercooling is 6 K to 7 K. Moreover, the predicted columnar dendritic morphology and SDAS of high-carbon Fe-C alloys during the unidirectional solidification agree with the experimental results.

  10. Three-Dimensional Audio Client Library

    NASA Technical Reports Server (NTRS)

    Rizzi, Stephen A.

    2005-01-01

    The Three-Dimensional Audio Client Library (3DAudio library) is a group of software routines written to facilitate development of both stand-alone (audio only) and immersive virtual-reality application programs that utilize three-dimensional audio displays. The library is intended to enable the development of three-dimensional audio client application programs by use of a code base common to multiple audio server computers. The 3DAudio library calls vendor-specific audio client libraries and currently supports the AuSIM Gold-Server and Lake Huron audio servers. 3DAudio library routines contain common functions for (1) initiation and termination of a client/audio server session, (2) configuration-file input, (3) positioning functions, (4) coordinate transformations, (5) audio transport functions, (6) rendering functions, (7) debugging functions, and (8) event-list-sequencing functions. The 3DAudio software is written in the C++ programming language and currently operates under the Linux, IRIX, and Windows operating systems.

  11. Hyoid Bone Development: An Assessment Of Optimal CT Scanner Parameters and Three-Dimensional Volume Rendering Techniques.

    PubMed

    Cotter, Meghan M; Whyms, Brian J; Kelly, Michael P; Doherty, Benjamin M; Gentry, Lindell R; Bersu, Edward T; Vorperian, Houri K

    2015-08-01

    The hyoid bone anchors and supports the vocal tract. Its complex shape is best studied in three dimensions, but it is difficult to capture on computed tomography (CT) images and three-dimensional volume renderings. The goal of this study was to determine the optimal CT scanning and rendering parameters to accurately measure the growth and developmental anatomy of the hyoid and to determine whether it is feasible and necessary to use these parameters in the measurement of hyoids from in vivo CT scans. Direct linear and volumetric measurements of skeletonized hyoid bone specimens were compared with corresponding CT images to determine the most accurate scanning parameters and three-dimensional rendering techniques. A pilot study was undertaken using in vivo scans from a retrospective CT database to determine feasibility of quantifying hyoid growth. Scanning parameters and rendering technique affected accuracy of measurements. Most linear CT measurements were within 10% of direct measurements; however, volume was overestimated when CT scans were acquired with a slice thickness greater than 1.25 mm. Slice-by-slice thresholding of hyoid images decreased volume overestimation. The pilot study revealed that the linear measurements tested correlate with age. A fine-tuned rendering approach applied to small slice thickness CT scans produces the most accurate measurements of hyoid bones. However, linear measurements can be accurately assessed from in vivo CT scans at a larger slice thickness. Such findings imply that investigation into the growth and development of the hyoid bone, and the vocal tract as a whole, can now be performed using these techniques. PMID:25810349

  12. Agile Software Development

    ERIC Educational Resources Information Center

    Biju, Soly Mathew

    2008-01-01

    Many software development firms are now adopting the agile software development method. This method involves the customer at every level of software development, thus reducing the impact of change in the requirement at a later stage. In this article, the principles of the agile method for software development are explored and there is a focus on…

  13. On the development of a three-dimensional finite-element groundwater flow model of the saturated zone, Yucca Mountain, Nevada

    SciTech Connect

    Czarnecki, J.B.; Faunt, C.C.; Gable, C.W.; Zyvoloski, G.A.

    1996-12-31

    Development of a preliminary three-dimensional model of the saturated zone at Yucca Mountain, the potential location for a high-level nuclear waste repository, is presented. The development of the model advances the technology of interfacing: (1)complex three-dimensional hydrogeologic framework modeling; (2) fully three-dimensional, unstructured, finite-element mesh generation; and (3) groundwater flow, heat, and transport simulation. The three-dimensional hydrogeologic framework model is developed using maps, cross sections, and well data. The framework model data are used to feed an automated mesh generator, designed to discretize irregular three-dimensional solids,a nd to assign materials properties from the hydrogeologic framework model to the tetrahedral elements. The mesh generator facilitated the addition of nodes to the finite-element mesh which correspond to the exact three-dimensional position of the potentiometric surface based on water-levels from wells. A ground water flow and heat simulator is run with the resulting finite- element mesh, within a parameter-estimation program. The application of the parameter-estimation program is designed to provide optimal values of permeability and specified fluxes over the model domain to minimize the residual between observed and simulated water levels.

  14. Development of Periodic and Three-Dimensional Structures in Acrylic-Monomer Photopolymer Materials by Holographic Methods

    NASA Astrophysics Data System (ADS)

    Vorzobova, N. D.; Bulgakova, V. G.; Moskalenko, A. I.; Pavlovets, I. M.; Denisyuk, I. Yu.; Burunkova, Yu. É.

    2015-01-01

    We show the possibility and advantages of using photopolymer materials based on acrylic monomers and nanocomposites in holography. Holographic characteristics of these materials and conditions for forming periodic structures and three-dimensional elements in them are determined.

  15. Development of finite element analysis method for three-dimensional hot bending and direct quench (3DQ) process

    NASA Astrophysics Data System (ADS)

    Kubota, Hiroaki; Tomizawa, Atsushi; Yamamoto, Kenji; Okada, Nobuhiro

    2013-05-01

    The automotive industry has been focusing on developing lighter vehicles to improve fuel economy and crash safety. In order to meet these requirements, Three Dimensional Hot Bending and Direct Quench (3DQ) Technology has been developed, which enables a manufacturer to form hollow tubular automotive parts with a tensile strength of 1,470 MPa or over. 3DQ is a type of consecutive forming that allows bending and quenching at the same time, with a tube feeding device, an induction heater, a cooling device, and a bending device. In this research, a coupled thermomechanical-metallurgical finite element analysis (FEA) method has been developed to investigate the deformation behavior and to predict the forming capability of 3DQ. In the developed FEA procedure, the temperature distribution was calculated with electro magnetic and heat transfer analysis, and the flow stress was defined by transformation models and linear mixture rule. An experimental formula was used to track the ferrite-austenite transformation, and a Koistinen-Marburger relationship was employed to describe austenite-martensite change. The simulated results were compared with the experimental measurements, and the effectiveness of the developed FEA method was confirmed. Furthermore, the deformation characteristics of 3DQ, such as the wrinkling limit and the thickness change, were investigated, and simple equations to describe them were proposed.

  16. Three-dimensional echocardiography in a dynamic heart phantom: comparison of five different methods to measure chamber volume using a commercially available software.

    PubMed

    Wood, Peter W; Gibson, Patrick H; Becher, Harald

    2014-12-01

    Several methods of analysis are available for quantification of left ventricular volumes and ejection fraction using three-dimensional (3D) echocardiography. This study compared the accuracy and reproducibility of five methods of analysis in a novel, irregularly shaped dynamic heart phantom with excellent image quality. Five 3D datasets were acquired on a Philips IE33 platform using an X5-1 3D transducer. Each dataset was analysed by five different methods using the Philips QLab v8.1 software: Methods A1, A2 and A3, semi-automated contour detection with varying degrees of user correction; Method B, Simpson's biplane method using optimally aligned four- and two-chamber views and Method C, method of discs, manually delineated in reconstructed short-axis views. Time-volume curves were generated for each method and compared with the true volumes measured throughout systole in the phantom heart. A second observer repeated measurements by each method in a single 3D dataset. Method A1 (uncorrected semi-automated contouring) produced the most consistent time-volume curves, although end-diastolic and end-systolic volumes varied between datasets. Any manual correction of contours (Methods A2, A3 and B) resulted in significant variation in the time-volume curves, with less consistent endocardial tracking. Method C was not only the most accurate and reproducible method, but also the most time-consuming one. Different methods of 3D volume quantification vary significantly in accuracy and reproducibility using an irregular phantom heart model. Although contouring may appear optimal in long-axis views, this may not be replicated circumferentially, and the resulting measures appeared to be less robust following the manual correction of semi-automated contours. PMID:26693301

  17. Development and Initial Porcine and Cadaver Experience with Three-Dimensional Printing of Endoscopic and Laparoscopic Equipment

    PubMed Central

    del Junco, Michael; Okhunov, Zhamshid; Yoon, Renai; Khanipour, Ramtin; Juncal, Samuel; Abedi, Garen; Lusch, Achim

    2015-01-01

    Abstract Introduction: Recent advances in three-dimensional (3D) printing technology have made it possible to print surgical devices. We report our initial experience with the printing and deployment of endoscopic and laparoscopic equipment. Materials and Methods: We created computer-aided designs for ureteral stents and laparoscopic trocars using SolidWorks. We developed three generations of stents, which were printed with an Objet500 Connex printer, and a fourth generation was printed with an EOSINT P395 printer. The trocars were printed with an Objet30 Pro printer. We deployed the printed stents and trocars in a female cadaver and in vivo porcine model. We compared the printed trocars to two standard trocars for defect area and length using a digital caliper. Paired T-tests and ANOVA were used to test for statistical difference. Results: The first two generations of stents (7F and 9F) were functional failures as their diminutive inner lumen failed to allow the passage of a 0.035 guidewire. The third generation 12F stent allowed passage of a 0.035 guidewire. The 12F diameter limited its deployment, but it was introduced in a cadaver through a ureteral access sheath. The fourth-generation 9F stents were printed and deployed in a porcine model using the standard Seldinger technique. The printed trocars were functional for the maintenance of the pneumoperitoneum and instrument passage. The printed trocars had larger superficial defect areas (p<0.001) and lengths (p=0.001) compared to Karl Storz and Ethicon trocars (29.41, 18.06, and 17.22 mm2, respectively, and 14.29, 11.39, and 12.15 mm, respectively). Conclusions: In this pilot study, 3D printing of ureteral stents and trocars is feasible, and these devices can be deployed in the porcine and cadaver models. Three-dimensional printing is rapidly advancing and may be clinically viable in the future. PMID:24983138

  18. Three-dimensional silicon micromachining

    NASA Astrophysics Data System (ADS)

    Azimi, S.; Song, J.; Dang, Z. Y.; Liang, H. D.; Breese, M. B. H.

    2012-11-01

    A process for fabricating arbitrary-shaped, two- and three-dimensional silicon and porous silicon components has been developed, based on high-energy ion irradiation, such as 250 keV to 1 MeV protons and helium. Irradiation alters the hole current flow during subsequent electrochemical anodization, allowing the anodization rate to be slowed or stopped for low/high fluences. For moderate fluences the anodization rate is selectively stopped only at depths corresponding to the high defect density at the end of ion range, allowing true three-dimensional silicon machining. The use of this process in fields including optics, photonics, holography and nanoscale depth machining is reviewed.

  19. Development of a Three-Dimensional Bone-Like Construct in a Soft Self-Assembling Peptide Matrix

    PubMed Central

    Marí-Buyé, Núria; Luque, Tomás; Navajas, Daniel

    2013-01-01

    This work describes the development of a three-dimensional (3D) model of osteogenesis using mouse preosteoblastic MC3T3-E1 cells and a soft synthetic matrix made out of self-assembling peptide nanofibers. By adjusting the matrix stiffness to very low values (around 120 Pa), cells were found to migrate within the matrix, interact forming a cell–cell network, and create a contracted and stiffer structure. Interestingly, during this process, cells spontaneously upregulate the expression of bone-related proteins such as collagen type I, bone sialoprotein, and osteocalcin, indicating that the 3D environment enhances their osteogenic potential. However, unlike MC3T3-E1 cultures in 2D, the addition of dexamethasone is required to acquire a final mature phenotype characterized by features such as matrix mineralization. Moreover, a slight increase in the hydrogel stiffness (threefold) or the addition of a cell contractility inhibitor (Rho kinase inhibitor) abrogates cell elongation, migration, and 3D culture contraction. However, this mechanical inhibition does not seem to noticeably affect the osteogenic process, at least at early culture times. This 3D bone model intends to emphasize cell–cell interactions, which have a critical role during tissue formation, by using a compliant unrestricted synthetic matrix. PMID:23157379

  20. Development of a three-dimensional guidance system for long-range maneuvering of a miniature autonomous underwater vehicle

    NASA Astrophysics Data System (ADS)

    Ataei, Mansour; Yousefi-Koma, Aghil

    2014-12-01

    The present paper introduces a three-dimensional guidance system developed for a miniature Autonomous Underwater Vehicle (AUV). The guidance system determines the best trajectory for the vehicle based on target behavior and vehicle capabilities. The dynamic model of this novel AUV is derived based on its special characteristics such as the horizontal posture and the independent diving mechanism. To design the guidance strategy, the main idea is to select the desired depth, presumed proportional to the horizontal distance of the AUV and the target. By connecting the two with a straight line, this strategy helps the AUV move in a trajectory sufficiently close to this line. The adjacency of the trajectory to the line leads to reasonably short travelling distances and avoids unsafe areas. Autopilots are designed using sliding mode controller. Two different engagement geometries are considered to evaluate the strategy's performance: stationary target and moving target. The simulation results show that the strategy can provide sufficiently fast and smooth trajectories in both target situations.

  1. Mathematical algorithm development and parametric studies with the GEOFRAC three-dimensional stochastic model of natural rock fracture systems

    NASA Astrophysics Data System (ADS)

    Ivanova, Violeta M.; Sousa, Rita; Murrihy, Brian; Einstein, Herbert H.

    2014-06-01

    This paper presents results from research conducted at MIT during 2010-2012 on modeling of natural rock fracture systems with the GEOFRAC three-dimensional stochastic model. Following a background summary of discrete fracture network models and a brief introduction of GEOFRAC, the paper provides a thorough description of the newly developed mathematical and computer algorithms for fracture intensity, aperture, and intersection representation, which have been implemented in MATLAB. The new methods optimize, in particular, the representation of fracture intensity in terms of cumulative fracture area per unit volume, P32, via the Poisson-Voronoi Tessellation of planes into polygonal fracture shapes. In addition, fracture apertures now can be represented probabilistically or deterministically whereas the newly implemented intersection algorithms allow for computing discrete pathways of interconnected fractures. In conclusion, results from a statistical parametric study, which was conducted with the enhanced GEOFRAC model and the new MATLAB-based Monte Carlo simulation program FRACSIM, demonstrate how fracture intensity, size, and orientations influence fracture connectivity.

  2. Development of a three-dimensional angle errors detection and compensation system for two-dimensional stage

    NASA Astrophysics Data System (ADS)

    Huang, Qiang-Xian; Bian, Ya-Kui; Chen, Chen; Li, Rui-Jun

    2016-01-01

    In order to compensate three-dimensional (3D) angle errors of two-dimensional (2D) stage in motion, a 3D angle errors detection and compensation system using a modified DVD pick-up head has been developed in this paper. The modified DVD pick-up head, which consists of a commercial DVD pick-up head without objective lens and voice coil motor, is used as an angle sensor. The mechanism of the angle sensor is based on optical auto-collimation, and each sensor can detect two deflection angles of the stage simultaneously. Utilizing the angle error information obtained by two angle sensors which are set along X and Y moving direction respectively, the controlling system adjusts the nano-positioning stage by controlling the piezoelectric ceramic actuators' movement to compensate the angle errors of the stage. This system can achieve the measurement and compensation of yaw angle error, pitch angle error and roll angle error of the stage. Experimental results show that the angle detection range of this system is +/-110", the resolution is about 0.2", and the repeatability error is about 2″. After compensating, the 3D angle errors of 2D stage can be controlled within 3″. This system has the advantages of compact structure, low cost, etc.

  3. Three-Dimensional Culture of Cells and Matrix Biomolecules for Engineered Tissue Development and Biokinetics Model Validation

    PubMed Central

    Mason, Shelley S.; Kohles, Sean S.; Zelick, Randy D.; Winn, Shelley R.; Saha, Asit K.

    2011-01-01

    There has been considerable progress in cellular and molecular engineering due to recent advances in multiscale technology. Such technologies allow controlled manipulation of physiochemical interactions among cells in tissue culture. In particular, a novel chemomechanical bioreactor has recently been designed for the study of bone and cartilage tissue development, with particular focus on extracellular matrix formation. The bioreactor is equally significant as a tool for validation of mathematical models that explore biokinetic regulatory thresholds (Saha, A. K., and Kohles, S. S., 2010, “A Distinct Catabolic to Anabolic Threshold Due to Single-Cell Nanomechanical Stimulation in a Cartilage Biokinetics Model,” J. Nanotechnol. Eng. Med., 1(3), p. 031005; 2010, “Periodic Nanomechanical Stimulation in a Biokinetics Model Identifying Anabolic and Catabolic Pathways Associated With Cartilage Matrix Homeostasis,” J. Nanotechnol. Eng. Med., 1(4), p. 041001). In the current study, three-dimensional culture protocols are described for maintaining the cellular and biomolecular constituents within defined parameters. Preliminary validation of the bioreactor’s form and function, expected bioassays of the resulting matrix components, and application to biokinetic models are described. This approach provides a framework for future detailed explorations combining multiscale experimental and mathematical analyses, at nanoscale sensitivity, to describe cell and biomolecule dynamics in different environmental regimes. PMID:21709743

  4. Two-dimensional and three-dimensional ultrasonography for pregnancy diagnosis and antenatal fetal development in Beetal goats

    PubMed Central

    Kumar, Kailash; Chandolia, Ramesh Kumar; Kumar, Sarvan; Pal, Madan; Sandeep, Kumar

    2015-01-01

    Aim: The objective of this study was to compare two-dimensional (2D) and three-dimensional (3D) study of the pregnant uterus and antenatal development of the fetus. Materials and Methods: 2D and 3D ultrasound were performed from day 20 to 120 of gestation, twice in week from day 20 to 60 and once in week from day 60 to 120 of gestation on six goats. The ultrasonographic images were obtained using Toshiba, Nemio-XG (Japan) 3D ultrasound machine. Results: On the 20th day of gestation, earliest diagnosis of pregnancy was done. First 3D ultrasonographic image of the conceptus, through transabdominal approach, was obtained on day 24. On 39th day, clear pictures of conceptus, amniotic membrane, and umbilicus were seen. On 76th day of gestation, internal organs of fetus viz heart, kidney, liver, urinary bladder, and stomach were seen both in 2D and 3D images. 3D imaging showed better details of uterine structures and internal organs of the fetus. Conclusions: Comparing 3D images with 2D images, it is concluded that 2D was better in visualizing fluid while 3D images were better to view details of attachment of fetus with endometrium. PMID:27047162

  5. Basal cell carcinoma develops in contact with the epidermal basal cell layer - a three-dimensional morphological study.

    PubMed

    Pirici, Ionica; Ciurea, Marius Eugen; Mîndrilă, Ion; Avrămoiu, Ioan; Pirici, Alexandru; Nicola, Monica Georgiana; Rogoveanu, Otilia Constantina

    2016-01-01

    Basal cell carcinoma is the most common malignant tumor of the skin, and it develops most frequently on the areas of the body that make its treatment and care extremely difficult, especially in cases of neglecting or aggressive growth and invasion. Both typical mild cases as well as locally aggressive tumor types do not tend to metastasize, and it has been postulated that they should share some common biological and morphological features that might explain this behavior. In this study, we have utilized a high-resolution three-dimensional reconstruction technique on pathological samples from 15 cases of common aggressive (fibrosing and adenoid types) and mild (superficial type) basal cell carcinomas, and showed that all these types shared contact points and bridges with the underlying basal cell layer of the epidermis or with the outmost layer of the hair follicle. The connections found had in fact the highest number for fibrosing type (100%), compared to the superficial (85.71%) and adenoid (55%) types. The morphology of the connection bridges was also different, adjacent moderate to abundant inflammatory infiltrate seeming to lead to a loss of basaloid features in these areas. For the adenoid type, tumor islands seemed to be connected also to each other more strongly, forming a common "tumor lace", and while it has been showed that superficial and fibrosing types have higher recurrence risks, all together these data might iterate a connection between the number of bridging points and the biological and clinical manifestation of this skin tumor. PMID:27151694

  6. Preliminary development of the LBL/USGS three-dimensional site-scale model of Yucca Mountain, Nevada

    SciTech Connect

    Wittwer, C.; Chen, G.; Bodvarsson, G.S.; Chornack, M.; Flint, A.; Flint, L.; Kwicklis, E.; Spengler, R.

    1995-06-01

    A 3-D model of moisture flow within the unsaturated zone at Yucca Mountain is being developed at LBL in cooperation with USGS. This site-scale model covers an area of about 34 km{sup 2} and is bounded by major faults to the north, east, and west. The relatively coarse-grid model includes about 300 horizontal grid-blocks and 17 layers. Contour maps and isopach maps are presented defining different types of infiltration zones, and the spatial distribution of Tiva Canyon, Paintbrush, and Topopah Spring hydrogeological units. Matrix flow is approximated using the van Genuchten model, and the equivalent continuum approximation is used to account for fracture flow in the welded units. One-, two-, and three-dimensional simulations are conducted using the TOUGH2 computer program. Steady-state simulations are performed with various uniform and nonuniform infiltration rates; results are interpreted in terms of effect of fault characteristics on moisture flow distribution, and on the location and formation of preferential pathways.

  7. Three-dimensional development of tensile pre-strained annulus fibrosus cells for tissue regeneration: An in-vitro study

    SciTech Connect

    Chuah, Yon Jin; Lee, Wu Chean; Wong, Hee Kit; Kang, Yuejun; Hee, Hwan Tak

    2015-02-01

    Prior research has investigated the immediate response after application of tensile strain on annulus fibrosus (AF) cells for the past decade. Although mechanical strain can produce either catabolic or anabolic consequences to the cell monolayer, little is known on how to translate these findings into further tissue engineering applications. Till to date, the application and effect of tensile pre-strained cells to construct a three-dimensional (3D) AF tissue remains unknown. This study aims to investigate the effect of tensile pre-strained exposure of 1 to 24 h on the development of AF pellet culture for 3 weeks. Equibiaxial cyclic tensile strain was applied on AF monolayer cells over a period of 24 h, which was subsequently developed into a cell pellet. Investigation on cellular proliferation, phenotypic gene expression, and histological changes revealed that tensile pre-strain for 24 h had significant and lasting effect on the AF tissue development, with enhanced cell proliferation, and up-regulation of collagen type I, II, and aggrecan expression. Our results demonstrated the regenerative ability of AF cell pellets subjected to 24 h tensile pre-straining. Knowledge on the effects of tensile pre-strain exposure is necessary to optimize AF development for tissue reconstruction. Moreover, the tensile pre-strained cells may further be utilized in either cell therapy to treat mild disc degeneration disease, or the development of a disc construct for total disc replacement. - Highlights: • Establishment of tensile pre-strained cell line population for annulus development. • Tensile strain limits collagen gene expression declination in monolayer culture. • Tensile pre-strained cells up-regulate their matrix protein in 3D pellet culture.

  8. Development of a three-dimensional ground-water model of the Hanford Site unconfined aquifer system: FY 1995 status report

    SciTech Connect

    Wurstner, S.K.; Thorne, P.D.; Chamness, M.A.; Freshley, M.D.; Williams, M.D.

    1995-12-01

    A three-dimensional numerical model of ground-water flow was developed for the uppermost unconfined aquifer at the Hanford Site in south-central Washington. Development of the model is supported by the Hanford Site Ground-Water Surveillance Project, managed by the Pacific Northwest National Laboratory, which is responsible for monitoring the sitewide movement of contaminants in ground water beneath the Hanford Site. Two objectives of the Ground-Water Surveillance Project are to (1) identify and quantify existing, emerging, or potential ground-water quality problems, and (2) assess the potential for contaminants to migrate from the Hanford Site through the ground-water pathway. Numerical models of the ground-water flow system are important tools for estimating future aquifer conditions and predicting the movement of contaminants through ground water. The Ground-Water Surveillance Project has supported development and maintenance of a two-dimensional model of the unconfined aquifer. This report describes upgrade of the two-dimensional model to a three-dimensional model. The numerical model is based on a three-dimensional conceptual model that will be continually refined and updated as additional information becomes available. This report presents a description of the three-dimensional conceptual model of ground-water flow in the unconfined aquifer system and then discusses the cur-rent state of the three-dimensional numerical model.

  9. Three-dimensional stellarator codes

    PubMed Central

    Garabedian, P. R.

    2002-01-01

    Three-dimensional computer codes have been used to develop quasisymmetric stellarators with modular coils that are promising candidates for a magnetic fusion reactor. The mathematics of plasma confinement raises serious questions about the numerical calculations. Convergence studies have been performed to assess the best configurations. Comparisons with recent data from large stellarator experiments serve to validate the theory. PMID:12140367

  10. Development of a Multicellular Three-dimensional Organotypic Model of the Human Intestinal Mucosa Grown Under Microgravity.

    PubMed

    Salerno-Goncalves, Rosangela; Fasano, Alessio; Sztein, Marcelo B

    2016-01-01

    Because cells growing in a three-dimensional (3-D) environment have the potential to bridge many gaps of cell cultivation in 2-D environments (e.g., flasks or dishes). In fact, it is widely recognized that cells grown in flasks or dishes tend to de-differentiate and lose specialized features of the tissues from which they were derived. Currently, there are mainly two types of 3-D culture systems where the cells are seeded into scaffolds mimicking the native extracellular matrix (ECM): (a) static models and (b) models using bioreactors. The first breakthrough was the static 3-D models. 3-D models using bioreactors such as the rotating-wall-vessel (RWV) bioreactors are a more recent development. The original concept of the RWV bioreactors was developed at NASA's Johnson Space Center in the early 1990s and is believed to overcome the limitations of static models such as the development of hypoxic, necrotic cores. The RWV bioreactors might circumvent this problem by providing fluid dynamics that allow the efficient diffusion of nutrients and oxygen. These bioreactors consist of a rotator base that serves to support and rotate two different formats of culture vessels that differ by their aeration source type: (1) Slow Turning Lateral Vessels (STLVs) with a co-axial oxygenator in the center, or (2) High Aspect Ratio Vessels (HARVs) with oxygenation via a flat, silicone rubber gas transfer membrane. These vessels allow efficient gas transfer while avoiding bubble formation and consequent turbulence. These conditions result in laminar flow and minimal shear force that models reduced gravity (microgravity) inside the culture vessel. Here we describe the development of a multicellular 3-D organotypic model of the human intestinal mucosa composed of an intestinal epithelial cell line and primary human lymphocytes, endothelial cells and fibroblasts cultured under microgravity provided by the RWV bioreactor. PMID:27500889

  11. On Possible Similarity Solutions for Three-Dimensional Incompressible Laminar Boundary-Layer Flows Over Developable Surfaces and with Proportional Mainstream Velocity Components

    NASA Technical Reports Server (NTRS)

    Hansen, Arthur G.

    1958-01-01

    Analysis is presented on the possible similarity solutions of the three-dimensional, laminar, incompressible, boundary-layer equations referred to orthogonal, curvilinear coordinate systems. Requirements of the existence of similarity solutions are obtained for the following: flow over developable surface and flow over non-developable surfaces with proportional mainstream velocity components.

  12. The human brain in 1700 pieces: design and development of a three-dimensional, interactive and reference atlas.

    PubMed

    Nowinski, W L; Chua, B C; Qian, G Y; Nowinska, N G

    2012-02-15

    As the human brain is the most complex living organ, constructing its detailed model with exploration capabilities in a form of an atlas is a challenge. Our overall goal is to construct an advanced, detailed, parcellated, labeled, accurate, interactive, three-dimensional (3D), and scalable whole human brain atlas of structure, vasculature, tracts and systems. The objectives of this work are three-fold; to present: (1) method of atlas design and development including design principles, accuracy requirements, atlas content, architecture, functionality, user interface, and customized tools; (2) creation of an atlas of structure and systems including its modeling method and validation; and (3) integration of this atlas with the cerebrovasculature and tracts created earlier. The atlas is created from multiple in vivo 3/7 T scans. Its design based on "pyramidal principle" enables scalability while preserving design principles and exploits interaction paradigm "from blocks to brain". The atlas contains (1) navigator with modules for system/object/object state management, interaction, user interfacing, and rendering; and (2) brain model with cerebrum, cerebellum, brainstem, spinal cord, white matter, deep structures, systems, ventricles, arteries, veins, sinuses, and tracts. The brain model is parcellated, labeled, consistent, realistic, of high resolution, polygonal/volumetric, dissectible, extendable, and deformable. It has over 1700 3D components. The atlas has sub-voxel accuracy of 0.1mm and the smallest vessels of 80 μm. Brain exploration includes dynamic scene composition, manipulation-independent 3D labeling, interaction combined with animation, meta-labeling, and quantification. This atlas is useful in education, research, and clinical applications. It can potentially be foundation for a multi-level molecular-cellular-anatomical-physiological-behavioral platform. PMID:22062451

  13. Teaching Three-Dimensional Structural Chemistry Using Crystal Structure Databases. 3. The Cambridge Structural Database System: Information Content and Access Software in Educational Applications

    ERIC Educational Resources Information Center

    Battle, Gary M.; Allen, Frank H.; Ferrence, Gregory M.

    2011-01-01

    Parts 1 and 2 of this series described the educational value of experimental three-dimensional (3D) chemical structures determined by X-ray crystallography and retrieved from the crystallographic databases. In part 1, we described the information content of the Cambridge Structural Database (CSD) and discussed a representative teaching subset of…

  14. In vitro development of preimplantation porcine embryos using alginate hydrogels as a three-dimensional extracellular matrix.

    PubMed

    Sargus-Patino, Catherine N; Wright, Elane C; Plautz, Sarah A; Miles, Jeremy R; Vallet, Jeff L; Pannier, Angela K

    2014-08-01

    Between Days 10 and 12 of gestation, porcine embryos undergo a dramatic morphological change, known as elongation, with a corresponding increase in oestrogen production that triggers maternal recognition of pregnancy. Elongation deficiencies contribute to embryonic loss, but exact mechanisms of elongation are poorly understood due to the lack of an effective in vitro culture system. Our objective was to use alginate hydrogels as three-dimensional scaffolds that can mechanically support the in vitro development of preimplantation porcine embryos. White cross-bred gilts were bred at oestrus (Day 0) to Duroc boars and embryos were recovered on Days 9, 10 or 11 of gestation. Spherical embryos were randomly assigned to be encapsulated within double-layered 0.7% alginate beads or remain as non-encapsulated controls (ENC and CONT treatment groups, respectively) and were cultured for 96h. Every 24h, half the medium was replaced with fresh medium and an image of each embryo was recorded. At the termination of culture, embryo images were used to assess morphological changes and cell survival. 17β-Oestradiol levels were measured in the removed media by radioimmunoassay. Real-time polymerase chain reaction was used to analyse steroidogenic transcript expression at 96h in ENC and CONT embryos, as well as in vivo-developed control embryos (i.e. spherical, ovoid and tubular). Although no differences in cell survival were observed, 32% (P<0.001) of the surviving ENC embryos underwent morphological changes characterised by tubal formation with subsequent flattening, whereas none of the CONT embryos exhibited morphological changes. Expression of steroidogenic transcripts STAR, CYP11A1 and CYP19A1 was greater (P<0.07) in ENC embryos with morphological changes (ENC+) compared with CONT embryos and ENC embryos with no morphological changes (ENC-), and was more similar to expression of later-stage in vivo-developed controls. Furthermore, a time-dependent increase (P<0.001) in 17

  15. Development of Numerical Method for Two-phase Flows on Three-dimensional Arbitrarily-shaped Polyhedral Meshes

    NASA Astrophysics Data System (ADS)

    Suzuki, Kohei; Omori, Takesi; Kajishima, Takeo

    2014-11-01

    Although the advantage of using arbitrarily-shaped polyhedral meshes for the industrial flow applications is clear, their employment to two-phase flows is rather limited due to the poor prediction accuracy of the existing numerical methods on such meshes. We present a numerical method based on VOF (Volume of Fluid) method which works on arbitrarily-shaped three-dimensional polyhedral meshes with little volume/shape error for the interface advection and with little curvature estimation error. To make the implementation in three-dimensional geometry feasible, we extend THINC (Tangent of Hyperbola Interface Capturing) method for polyhedral meshes which does not require laborious geometric arithmetics. In the oral presentation we will also show that the combination of RDF (Reconstructed Distance Function) algorithm and the carefully selected discretization procedure gives good performance in the interface curvature estimation.

  16. Gammasphere software development

    SciTech Connect

    Piercey, R.B.

    1993-01-01

    Activities of the nuclear physics group are described. Progress was made in organizing the Gammasphere Software Working Group, establishing a nuclear computing facility, participating in software development at Lawrence Berkeley, developing a common data file format, and adapting the ORNL UPAK software to run at Gammasphere. A universal histogram object was developed that defines a file format and provides for an objective-oriented programming model. An automated liquid nitrogen fill system was developed for Gammasphere (110 Ge detectors comprise the sphere).

  17. Development and characterization of a three-dimensional radiochromic film stack dosimeter for megavoltage photon beam dosimetry

    SciTech Connect

    McCaw, Travis J. Micka, John A.; DeWerd, Larry A.

    2014-05-15

    Purpose: Three-dimensional (3D) dosimeters are particularly useful for verifying the commissioning of treatment planning and delivery systems, especially with the ever-increasing implementation of complex and conformal radiotherapy techniques such as volumetric modulated arc therapy. However, currently available 3D dosimeters require extensive experience to prepare and analyze, and are subject to large measurement uncertainties. This work aims to provide a more readily implementable 3D dosimeter with the development and characterization of a radiochromic film stack dosimeter for megavoltage photon beam dosimetry. Methods: A film stack dosimeter was developed using Gafchromic{sup ®} EBT2 films. The dosimeter consists of 22 films separated by 1 mm-thick spacers. A Virtual Water™ phantom was created that maintains the radial film alignment within a maximum uncertainty of 0.3 mm. The film stack dosimeter was characterized using simulations and measurements of 6 MV fields. The absorbed-dose energy dependence and orientation dependence of the film stack dosimeter were investigated using Monte Carlo simulations. The water equivalence of the dosimeter was determined by comparing percentage-depth-dose (PDD) profiles measured with the film stack dosimeter and simulated using Monte Carlo methods. Film stack dosimeter measurements were verified with thermoluminescent dosimeter (TLD) microcube measurements. The film stack dosimeter was also used to verify the delivery of an intensity-modulated radiation therapy (IMRT) procedure. Results: The absorbed-dose energy response of EBT2 film differs less than 1.5% between the calibration and film stack dosimeter geometries for a 6 MV spectrum. Over a series of beam angles ranging from normal incidence to parallel incidence, the overall variation in the response of the film stack dosimeter is within a range of 2.5%. Relative to the response to a normally incident beam, the film stack dosimeter exhibits a 1% under-response when the

  18. Three-Dimensional Lung Tumor Microenvironment Modulates Therapeutic Compound Responsiveness In Vitro – Implication for Drug Development

    PubMed Central

    Ekert, Jason E.; Johnson, Kjell; Strake, Brandy; Pardinas, Jose; Jarantow, Stephen; Perkinson, Robert; Colter, David C.

    2014-01-01

    Three-dimensional (3D) cell culture is gaining acceptance in response to the need for cellular models that better mimic physiologic tissues. Spheroids are one such 3D model where clusters of cells will undergo self-assembly to form viable, 3D tumor-like structures. However, to date little is known about how spheroid biology compares to that of the more traditional and widely utilized 2D monolayer cultures. Therefore, the goal of this study was to characterize the phenotypic and functional differences between lung tumor cells grown as 2D monolayer cultures, versus cells grown as 3D spheroids. Eight lung tumor cell lines, displaying varying levels of epidermal growth factor receptor (EGFR) and cMET protein expression, were used to develop a 3D spheroid cell culture model using low attachment U-bottom plates. The 3D spheroids were compared with cells grown in monolayer for 1) EGFR and cMET receptor expression, as determined by flow cytometry, 2) EGFR and cMET phosphorylation by MSD assay, and 3) cell proliferation in response to epidermal growth factor (EGF) and hepatocyte growth factor (HGF). In addition, drug responsiveness to EGFR and cMET inhibitors (Erlotinib, Crizotinib, Cetuximab [Erbitux] and Onartuzumab [MetMab]) was evaluated by measuring the extent of cell proliferation and migration. Data showed that EGFR and cMET expression is reduced at day four of untreated spheroid culture compared to monolayer. Basal phosphorylation of EGFR and cMET was higher in spheroids compared to monolayer cultures. Spheroids showed reduced EGFR and cMET phosphorylation when stimulated with ligand compared to 2D cultures. Spheroids showed an altered cell proliferation response to HGF, as well as to EGFR and cMET inhibitors, compared to monolayer cultures. Finally, spheroid cultures showed exceptional utility in a cell migration assay. Overall, the 3D spheroid culture changed the cellular response to drugs and growth factors and may more accurately mimic the natural tumor

  19. Development and application of one-way elastic wave propagators in generally-anisotropic, heterogeneous, three-dimensional media

    NASA Astrophysics Data System (ADS)

    Angus, Douglas A.

    A finite-difference narrow-angle one-way wave equation is implemented and is applied to various wave propagation problems to verify the method as well as to study frequency-dependent three-component waveform effects. The narrow-angle wave equation is the most approximate, yet most computationally practical, of the one-way wave equations derived by Thomson (1999). Although the vector narrow-angle wave equation is limited to a certain propagation distance, it is still a viable and powerful modelling approach to wave propagation in three-dimensional elastic media. A FORTRAN finite-difference code is developed that is second-order accurate in the lateral and forward propagation direction and requires only three extrapolation planes to be stored during each propagation step. Numerical analysis of the finite-difference algorithm indicates that the scheme is stable for appropriate initial conditions and, for the propagation path-lengths of interest, angular range of forward propagation and source-pulse spectral content, numerical grid-anisotropy is minimal. The narrow-angle propagator is sufficiently accurate for angles up to +/-15° to the preferred direction of propagation and is stable within singular regions of slowness space. For reasonable velocity gradients, the travel-times and amplitudes of transmitted and converted body-waves are in good agreement with an exact reference solution. The conical-point singularity is the main focus of the homogeneous, anisotropic wave propagation examples, because it represents the most extreme anisotropic singularity and poses the greatest difficulty for ray-based methods. The results of wave propagation along the acoustic axis display characteristic and potentially diagnostic waveform effects, such as wavefront folding and tearing, merging and splitting pulses, growth of anomalous components and bipolar waveforms. The results of wave propagation in isotropic heterogeneous media are consistent with various published results. Some

  20. Three-dimensional lung tumor microenvironment modulates therapeutic compound responsiveness in vitro--implication for drug development.

    PubMed

    Ekert, Jason E; Johnson, Kjell; Strake, Brandy; Pardinas, Jose; Jarantow, Stephen; Perkinson, Robert; Colter, David C

    2014-01-01

    Three-dimensional (3D) cell culture is gaining acceptance in response to the need for cellular models that better mimic physiologic tissues. Spheroids are one such 3D model where clusters of cells will undergo self-assembly to form viable, 3D tumor-like structures. However, to date little is known about how spheroid biology compares to that of the more traditional and widely utilized 2D monolayer cultures. Therefore, the goal of this study was to characterize the phenotypic and functional differences between lung tumor cells grown as 2D monolayer cultures, versus cells grown as 3D spheroids. Eight lung tumor cell lines, displaying varying levels of epidermal growth factor receptor (EGFR) and cMET protein expression, were used to develop a 3D spheroid cell culture model using low attachment U-bottom plates. The 3D spheroids were compared with cells grown in monolayer for 1) EGFR and cMET receptor expression, as determined by flow cytometry, 2) EGFR and cMET phosphorylation by MSD assay, and 3) cell proliferation in response to epidermal growth factor (EGF) and hepatocyte growth factor (HGF). In addition, drug responsiveness to EGFR and cMET inhibitors (Erlotinib, Crizotinib, Cetuximab [Erbitux] and Onartuzumab [MetMab]) was evaluated by measuring the extent of cell proliferation and migration. Data showed that EGFR and cMET expression is reduced at day four of untreated spheroid culture compared to monolayer. Basal phosphorylation of EGFR and cMET was higher in spheroids compared to monolayer cultures. Spheroids showed reduced EGFR and cMET phosphorylation when stimulated with ligand compared to 2D cultures. Spheroids showed an altered cell proliferation response to HGF, as well as to EGFR and cMET inhibitors, compared to monolayer cultures. Finally, spheroid cultures showed exceptional utility in a cell migration assay. Overall, the 3D spheroid culture changed the cellular response to drugs and growth factors and may more accurately mimic the natural tumor

  1. Software Model Of Software-Development Process

    NASA Technical Reports Server (NTRS)

    Lin, Chi Y.; Synott, Debra J.; Levary, Reuven R.

    1990-01-01

    Collection of computer programs constitutes software tool for simulation of medium- to large-scale software-development projects. Necessary to include easily identifiable and more-readily quantifiable characteristics like costs, times, and numbers of errors. Mathematical model incorporating these and other factors of dynamics of software-development process implemented in the Software Life Cycle Simulator (SLICS) computer program. Simulates dynamics of software-development process. In combination with input and output expert software systems and knowledge-based management software system, develops information for use in managing large software-development project. Intended to aid managers in planning, managing, and controlling software-development processes by reducing uncertainties in budgets, required personnel, and schedules.

  2. Three-dimensional metamaterials

    DOEpatents

    Burckel, David Bruce

    2012-06-12

    A fabrication method is capable of creating canonical metamaterial structures arrayed in a three-dimensional geometry. The method uses a membrane suspended over a cavity with predefined pattern as a directional evaporation mask. Metallic and/or dielectric material can be evaporated at high vacuum through the patterned membrane to deposit resonator structures on the interior walls of the cavity, thereby providing a unit cell of micron-scale dimension. The method can produce volumetric metamaterial structures comprising layers of such unit cells of resonator structures.

  3. The development of three-dimensional adjoint method for flow control with blowing in convergent-divergent nozzle flows

    NASA Astrophysics Data System (ADS)

    Sikarwar, Nidhi

    multiple experiments or numerical simulations. Alternatively an inverse design method can be used. An adjoint optimization method can be used to achieve the optimum blowing rate. It is shown that the method works for both geometry optimization and active control of the flow in order to deflect the flow in desirable ways. An adjoint optimization method is described. It is used to determine the blowing distribution in the diverging section of a convergent-divergent nozzle that gives a desired pressure distribution in the nozzle. Both the direct and adjoint problems and their associated boundary conditions are developed. The adjoint method is used to determine the blowing distribution required to minimize the shock strength in the nozzle to achieve a known target pressure and to achieve close to an ideally expanded flow pressure. A multi-block structured solver is developed to calculate the flow solution and associated adjoint variables. Two and three-dimensional calculations are performed for internal and external of the nozzle domains. A two step MacCormack scheme based on predictor- corrector technique is was used for some calculations. The four and five stage Runge-Kutta schemes are also used to artificially march in time. A modified Runge-Kutta scheme is used to accelerate the convergence to a steady state. Second order artificial dissipation has been added to stabilize the calculations. The steepest decent method has been used for the optimization of the blowing velocity after the gradients of the cost function with respect to the blowing velocity are calculated using adjoint method. Several examples are given of the optimization of blowing using the adjoint method.

  4. Cleanroom software development

    NASA Technical Reports Server (NTRS)

    Dyer, M.; Mills, H. D.

    1981-01-01

    The 'cleanroom' software development process is a technical and organizational approach to developing software with certifiable reliability. Key ideas behind the process are well structured software specifications, randomized testing methods and the introduction of statistical controls; but the main point is to deny entry for defects during the development of software. This latter point suggests the use of the term 'cleanroom' in analogy to the defect prevention controls used in the manufacturing of high technology hardware. In the 'cleanroom', the entire software development process is embedded within a formal statistical design, in contrast to executing selected tests and appealing to the randomness of operational settings for drawing statistical inferences. Instead, random testing is introduced as a part of the statistical design itself so that when development and testing are completed, statistical inferences are made about the operation of the system.

  5. Three dimensional interactive display

    NASA Technical Reports Server (NTRS)

    Vranish, John M. (Inventor)

    2005-01-01

    A three-dimensional (3-D) interactive display and method of forming the same, includes a transparent capaciflector (TC) camera formed on a transparent shield layer on the screen surface. A first dielectric layer is formed on the shield layer. A first wire layer is formed on the first dielectric layer. A second dielectric layer is formed on the first wire layer. A second wire layer is formed on the second dielectric layer. Wires on the first wire layer and second wire layer are grouped into groups of parallel wires with a turnaround at one end of each group and a sensor pad at the opposite end. An operational amplifier is connected to each of the sensor pads and the shield pad biases the pads and receives a signal from connected sensor pads in response to intrusion of a probe. The signal is proportional to probe location with respect to the monitor screen.

  6. UWB Tracking Software Development

    NASA Technical Reports Server (NTRS)

    Gross, Julia; Arndt, Dickey; Ngo, Phong; Phan, Chau; Dusl, John; Ni, Jianjun; Rafford, Melinda

    2006-01-01

    An Ultra-Wideband (UWB) two-cluster Angle of Arrival (AOA) tracking prototype system is currently being developed and tested at NASA Johnson Space Center for space exploration applications. This talk discusses the software development efforts for this UWB two-cluster AOA tracking system. The role the software plays in this system is to take waveform data from two UWB radio receivers as an input, feed this input into an AOA tracking algorithm, and generate the target position as an output. The architecture of the software (Input/Output Interface and Algorithm Core) will be introduced in this talk. The development of this software has three phases. In Phase I, the software is mostly Matlab driven and calls C++ socket functions to provide the communication links to the radios. This is beneficial in the early stage when it is necessary to frequently test changes in the algorithm. Phase II of the development is to have the software mostly C++ driven and call a Matlab function for the AOA tracking algorithm. This is beneficial in order to send the tracking results to other systems and also to improve the tracking update rate of the system. The third phase is part of future work and is to have the software completely C++ driven with a graphics user interface. This software design enables the fine resolution tracking of the UWB two-cluster AOA tracking system.

  7. Development of three-dimensional site-site Smoluchowski-Vlasov equation and application to electrolyte solutions

    NASA Astrophysics Data System (ADS)

    Kasahara, Kento; Sato, Hirofumi

    2014-06-01

    Site-site Smoluchowski-Vlasov (SSSV) equation enables us to directly calculate van Hove time correlation function, which describes diffusion process in molecular liquids. Recently, the theory had been extended to treat solute-solvent system by Iida and Sato [J. Chem. Phys. 137, 034506 (2012)]. Because the original framework of SSSV equation is based on conventional pair correlation function, time evolution of system is expressed in terms of one-dimensional solvation structure. Here, we propose a new SSSV equation to calculate time evolution of solvation structure in three-dimensional space. The proposed theory was applied to analyze diffusion processes in 1M NaCl aqueous solution and in lithium ion battery electrolyte solution. The results demonstrate that these processes are properly described with the theory, and the computed van Hove functions are in good agreement with those in previous works.

  8. Development of three-dimensional site-site Smoluchowski-Vlasov equation and application to electrolyte solutions

    SciTech Connect

    Kasahara, Kento; Sato, Hirofumi

    2014-06-28

    Site-site Smoluchowski-Vlasov (SSSV) equation enables us to directly calculate van Hove time correlation function, which describes diffusion process in molecular liquids. Recently, the theory had been extended to treat solute-solvent system by Iida and Sato [J. Chem. Phys. 137, 034506 (2012)]. Because the original framework of SSSV equation is based on conventional pair correlation function, time evolution of system is expressed in terms of one-dimensional solvation structure. Here, we propose a new SSSV equation to calculate time evolution of solvation structure in three-dimensional space. The proposed theory was applied to analyze diffusion processes in 1M NaCl aqueous solution and in lithium ion battery electrolyte solution. The results demonstrate that these processes are properly described with the theory, and the computed van Hove functions are in good agreement with those in previous works.

  9. Three-dimensional turbulent particle dispersion submodel development. Final report, 15 April 1991--15 April 1993

    SciTech Connect

    Smith, P.J.

    1993-12-31

    Many practical combustion processes which use solid particles, liquid droplets, or slurries as fuels introduce these fuels into turbulent environments. Examples include spray combustion, pulverized coal and coal slurry combustion, fluidized beds, sorbent injection, and hazardous waste incineration. The interactions of the condensed phases with turbulent environments in such applications have not been well described. Such a description is complicated by the difficulty of describing turbulence in general, even in the absence of particles or droplets. But the complications in describing the dispersion and reaction of the condensed phases in turbulent environments do not stem entirely, or even primarily, from the uncertainties in the description of the turbulence. Even when the turbulence characteristics are known, computational methods for coupling the dynamics of the particulate phase with the continuous phase have not been well established. Several new theoretical descriptions of the turbulent dispersion of particles and droplets have been proposed over the past few years. It has been the purpose of this project to explore the potential of these theories for coupling with the other aspects of three-dimensional, reacting, turbulent, particle-laden systems, to provide computational simulations that could be useful for addressing industrial problems. Two different approaches were explored in this project. The major thrust of this project was on identifying a suitable dispersion submodel for dilute dispersed flows, implementing it in a comprehensive three-dimensional CFD code framework for combustion simulation and evaluating its performance rigorously. In another effort the potential of a dispersion submodel for densely loaded systems was analyzed. This report discusses the main issues that were resolved as part of this project.

  10. Speakeasy software development

    NASA Astrophysics Data System (ADS)

    Baskinger, Patricia J.; Ozarow, Larry; Chruscicki, Mary C.

    1993-08-01

    The Speakeasy Software Development Project had three primary objectives. The first objective was to perform Independent Verification and Validation (IV & V) of the software and documentation associated with the signal processor being developed by Hazeltine and TRW under the Speakeasy program. The IV & V task also included an analysis and assessment of the ability of the signal processor software to provide LPI communications functions. The second objective was to assist in the enhancement and modification of an existing Rome Lab signal processor workstation. Finally, TASC developed project management support tools and provided program management support to the Speakeasy Program Office.

  11. Three-dimensional printing physiology laboratory technology.

    PubMed

    Sulkin, Matthew S; Widder, Emily; Shao, Connie; Holzem, Katherine M; Gloschat, Christopher; Gutbrod, Sarah R; Efimov, Igor R

    2013-12-01

    Since its inception in 19th-century Germany, the physiology laboratory has been a complex and expensive research enterprise involving experts in various fields of science and engineering. Physiology research has been critically dependent on cutting-edge technological support of mechanical, electrical, optical, and more recently computer engineers. Evolution of modern experimental equipment is constrained by lack of direct communication between the physiological community and industry producing this equipment. Fortunately, recent advances in open source technologies, including three-dimensional printing, open source hardware and software, present an exciting opportunity to bring the design and development of research instrumentation to the end user, i.e., life scientists. Here we provide an overview on how to develop customized, cost-effective experimental equipment for physiology laboratories. PMID:24043254

  12. Space Flight Software Development Software for Intelligent System Health Management

    NASA Technical Reports Server (NTRS)

    Trevino, Luis C.; Crumbley, Tim

    2004-01-01

    The slide presentation examines the Marshall Space Flight Center Flight Software Branch, including software development projects, mission critical space flight software development, software technical insight, advanced software development technologies, and continuous improvement in the software development processes and methods.

  13. Development and application of a three dimensional numerical model for predicting pollutant and sediment transport using an Eulerian-Lagrangian marker particle technique

    NASA Technical Reports Server (NTRS)

    Pavish, D. L.; Spaulding, M. L.

    1977-01-01

    A computer coded Lagrangian marker particle in Eulerian finite difference cell solution to the three dimensional incompressible mass transport equation, Water Advective Particle in Cell Technique, WAPIC, was developed, verified against analytic solutions, and subsequently applied in the prediction of long term transport of a suspended sediment cloud resulting from an instantaneous dredge spoil release. Numerical results from WAPIC were verified against analytic solutions to the three dimensional incompressible mass transport equation for turbulent diffusion and advection of Gaussian dye releases in unbounded uniform and uniformly sheared uni-directional flow, and for steady-uniform plug channel flow. WAPIC was utilized to simulate an analytic solution for non-equilibrium sediment dropout from an initially vertically uniform particle distribution in one dimensional turbulent channel flow.

  14. Three-dimensional image signals: processing methods

    NASA Astrophysics Data System (ADS)

    Schiopu, Paul; Manea, Adrian; Craciun, Anca-Ileana; Craciun, Alexandru

    2010-11-01

    Over the years extensive studies have been carried out to apply coherent optics methods in real-time processing, communications and transmission image. This is especially true when a large amount of information needs to be processed, e.g., in high-resolution imaging. The recent progress in data-processing networks and communication systems has considerably increased the capacity of information exchange. We describe the results of literature investigation research of processing methods for the signals of the three-dimensional images. All commercially available 3D technologies today are based on stereoscopic viewing. 3D technology was once the exclusive domain of skilled computer-graphics developers with high-end machines and software. The images capture from the advanced 3D digital camera can be displayed onto screen of the 3D digital viewer with/ without special glasses. For this is needed considerable processing power and memory to create and render the complex mix of colors, textures, and virtual lighting and perspective necessary to make figures appear three-dimensional. Also, using a standard digital camera and a technique called phase-shift interferometry we can capture "digital holograms." These are holograms that can be stored on computer and transmitted over conventional networks. We present some research methods to process "digital holograms" for the Internet transmission and results.

  15. 4DCAPTURE: a general purpose software package for capturing and analyzing two- and three-dimensional motion data acquired from video sequences

    NASA Astrophysics Data System (ADS)

    Walton, James S.; Hodgson, Peter; Hallamasek, Karen; Palmer, Jake

    2003-07-01

    4DVideo is creating a general purpose capability for capturing and analyzing kinematic data from video sequences in near real-time. The core element of this capability is a software package designed for the PC platform. The software ("4DCapture") is designed to capture and manipulate customized AVI files that can contain a variety of synchronized data streams -- including audio, video, centroid locations -- and signals acquired from more traditional sources (such as accelerometers and strain gauges.) The code includes simultaneous capture or playback of multiple video streams, and linear editing of the images (together with the ancilliary data embedded in the files). Corresponding landmarks seen from two or more views are matched automatically, and photogrammetric algorithms permit multiple landmarks to be tracked in two- and three-dimensions -- with or without lens calibrations. Trajectory data can be processed within the main application or they can be exported to a spreadsheet where they can be processed or passed along to a more sophisticated, stand-alone, data analysis application. Previous attempts to develop such applications for high-speed imaging have been limited in their scope, or by the complexity of the application itself. 4DVideo has devised a friendly ("FlowStack") user interface that assists the end-user to capture and treat image sequences in a natural progression. 4DCapture employs the AVI 2.0 standard and DirectX technology which effectively eliminates the file size limitations found in older applications. In early tests, 4DVideo has streamed three RS-170 video sources to disk for more than an hour without loss of data. At this time, the software can acquire video sequences in three ways: (1) directly, from up to three hard-wired cameras supplying RS-170 (monochrome) signals; (2) directly, from a single camera or video recorder supplying an NTSC (color) signal; and (3) by importing existing video streams in the AVI 1.0 or AVI 2.0 formats. The

  16. VOUS Software Facilitates Development Of Other Software

    NASA Technical Reports Server (NTRS)

    Oliger, Joseph; Pichumani, Ramini; Ponceleon, Dulce

    1992-01-01

    Visual Object Oriented Unification System (VOUS) computer program provides facility for development of other, high-level software. Does not replace, but rather extends, preexisting software tools for development of other software. Provides comprehensive, graphical, interactive medium for all phases in development of computer code from early exploration of concepts, through detailed coding-and-error-checking process, to final reporting of finished code and compilation of instruction manual for its use. Simplifies and partly automates programmer's task.

  17. Three-dimensional surface reconstruction for industrial computed tomography

    NASA Technical Reports Server (NTRS)

    Vannier, M. W.; Knapp, R. H.; Gayou, D. E.; Sammon, N. P.; Butterfield, R. L.; Larson, J. W.

    1985-01-01

    Modern high resolution medical computed tomography (CT) scanners can produce geometrically accurate sectional images of many types of industrial objects. Computer software has been developed to convert serial CT scans into a three-dimensional surface form, suitable for display on the scanner itself. This software, originally developed for imaging the skull, has been adapted for application to industrial CT scanning, where serial CT scans thrrough an object of interest may be reconstructed to demonstrate spatial relationships in three dimensions that cannot be easily understood using the original slices. The methods of three-dimensional reconstruction and solid modeling are reviewed, and reconstruction in three dimensions from CT scans through familiar objects is demonstrated.

  18. Development of an optical three-dimensional laser tracker using dual modulated laser diodes and a signal detector

    SciTech Connect

    Lee, Hau-Wei; Chen, Chieh-Li; Liu, Chien-Hung

    2011-03-15

    Laser trackers are widely used in industry for tasks such as the assembly of airplanes and automobiles, contour measurement, and robot calibration. However, laser trackers are expensive, and the corresponding solution procedure is very complex. The influence of measurement uncertainties is also significant. This study proposes a three-dimensional space position measurement system which consists of two tracking modules, a zero tracking angle return subsystem, and a target quadrant photodiode (QPD). The target QPD is placed on the object being tracked. The origin locking method is used to keep the rays on the origin of the target QPD. The position of the target QPD is determined using triangulation since the two laser rays are projected onto one QPD. Modulation and demodulation are utilized to separate the coupled positional values. The experiment results show that measurement errors in the X, Y, and Z directions are less than {+-}0.05% when the measured object was moved by 300, 300, and 200 mm in the X, Y, and Z axes, respectively. The theoretical measurement error estimated from the measurement model is between {+-}0.02% and {+-}0.07% within the defined measurable range. The proposed system can be applied to the measurements of machine tools and robot arms.

  19. Development of a novel starch with a three-dimensional ordered macroporous structure for improving the dissolution rate of felodipine.

    PubMed

    Hao, Yanna; Wu, Chao; Zhao, Zongzhe; Zhao, Ying; Xu, Jie; Qiu, Yang; Jiang, Jie; Yu, Tong; Ma, Chunyu; Zhou, Buyun

    2016-01-01

    In this study, silica nanospheres with different particle sizes were used as hard template for synthesis of a starch with a novel three-dimensional ordered macroporous structure (3DOMTS). As a pharmaceutical adjuvant, 3DOMTS was used to improve the dissolution rate and oral relative bioavailability of water-insoluble drugs. Felodipine (FDP) was chosen as a model drug and was loaded into the 3DOMTS by solvent evaporation. FDP loading into 3DOMTS with different pore sizes was characterized by scanning electron microscopy (SEM), transmission electron microscopy (TEM), differential scanning calorimeter (DSC), powder X-ray diffractometer (PXRD) and Fourier-Transform Infrared (FTIR). The results obtained showed that FDP was present in the pores in an amorphic or microcrystalline state. The in vitro dissolution results showed that 3DOMTS could effectively improve the dissolution rate of FDP in comparison with commercial common tablets. Pharmacokinetic results indicated that the oral relative bioavailability of self-made FDP-3DOMTS tablets were 184%, showing that 3DOMTS produced a significantly increased oral absorption of FDP. In conclusion, 3DOMTS exhibits the dual potential of improving the dissolution rate of poorly water soluble drugs and the novel filler produced by direct compression technology confirming that 3DOMTS will be useful for many applications in the field of pharmaceutics. PMID:26478413

  20. Development of a three-dimensional cell culture system based on microfluidics for nuclear magnetic resonance and optical monitoring

    PubMed Central

    Esteve, Vicent; Monge, Rosa; Celda, Bernardo

    2014-01-01

    A new microfluidic cell culture device compatible with real-time nuclear magnetic resonance (NMR) is presented here. The intended application is the long-term monitoring of 3D cell cultures by several techniques. The system has been designed to fit inside commercially available NMR equipment to obtain maximum readout resolution when working with small samples. Moreover, the microfluidic device integrates a fibre-optic-based sensor to monitor parameters such as oxygen, pH, or temperature during NMR monitoring, and it also allows the use of optical microscopy techniques such as confocal fluorescence microscopy. This manuscript reports the initial trials culturing neurospheres inside the microchamber of this device and the preliminary images and spatially localised spectra obtained by NMR. The images show the presence of a necrotic area in the interior of the neurospheres, as is frequently observed in histological preparations; this phenomenon appears whenever the distance between the cells and fresh nutrients impairs the diffusion of oxygen. Moreover, the spectra acquired in a volume of 8 nl inside the neurosphere show an accumulation of lactate and lipids, which are indicative of anoxic conditions. Additionally, a basis for general temperature control and monitoring and a graphical control software have been developed and are also described. The complete platform will allow biomedical assays of therapeutic agents to be performed in the early phases of therapeutic development. Thus, small quantities of drugs or advanced nanodevices may be studied long-term under simulated living conditions that mimic the flow and distribution of nutrients. PMID:25553182

  1. Three dimensional optic tissue culture and process

    NASA Technical Reports Server (NTRS)

    Spaulding, Glenn F. (Inventor); Prewett, Tacey L. (Inventor); Goodwin, Thomas J. (Inventor); Francis, Karen M. (Inventor); Cardwell, Delmar R. (Inventor); Oconnor, Kim (Inventor); Fitzgerald, Wendy S. (Inventor); Aten, Laurie A. (Inventor)

    1994-01-01

    A process for artificially producing three-dimensional optic tissue has been developed. The optic cells are cultured in a bioreactor at low shear conditions. The tissue forms normal, functional tissue organization and extracellular matrix.

  2. Three Dimensional Optic Tissue Culture and Process

    NASA Technical Reports Server (NTRS)

    OConnor, Kim C. (Inventor); Spaulding, Glenn F. (Inventor); Goodwin, Thomas J. (Inventor); Aten, Laurie A. (Inventor); Francis, Karen M. (Inventor); Caldwell, Delmar R. (Inventor); Prewett, Tacey L. (Inventor); Fitzgerald, Wendy S. (Inventor)

    1999-01-01

    A process for artificially producing three-dimensional optic tissue has been developed. The optic cells are cultured in a bioireactor at low shear conditions. The tissue forms as normal, functional tissue grows with tissue organization and extracellular matrix formation.

  3. Easy-DHPSF open-source software for three-dimensional localization of single molecules with precision beyond the optical diffraction limit.

    PubMed

    Lew, Matthew D; von Diezmann, Alexander R S; Moerner, W E

    2013-02-25

    Automated processing of double-helix (DH) microscope images of single molecules (SMs) streamlines the protocol required to obtain super-resolved three-dimensional (3D) reconstructions of ultrastructures in biological samples by single-molecule active control microscopy. Here, we present a suite of MATLAB subroutines, bundled with an easy-to-use graphical user interface (GUI), that facilitates 3D localization of single emitters (e.g. SMs, fluorescent beads, or quantum dots) with precisions of tens of nanometers in multi-frame movies acquired using a wide-field DH epifluorescence microscope. The algorithmic approach is based upon template matching for SM recognition and least-squares fitting for 3D position measurement, both of which are computationally expedient and precise. Overlapping images of SMs are ignored, and the precision of least-squares fitting is not as high as maximum likelihood-based methods. However, once calibrated, the algorithm can fit 15-30 molecules per second on a 3 GHz Intel Core 2 Duo workstation, thereby producing a 3D super-resolution reconstruction of 100,000 molecules over a 20×20×2 μm field of view (processing 128×128 pixels × 20000 frames) in 75 min. PMID:25279136

  4. Three-dimensional visual stimulator

    NASA Astrophysics Data System (ADS)

    Takeda, Tsunehiro; Fukui, Yukio; Hashimoto, Keizo; Hiruma, Nobuyuki

    1995-02-01

    We describe a newly developed three-dimensional visual stimulator (TVS) that can change independently the directions, distances, sizes, luminance, and varieties of two sets of targets for both eyes. It consists of liquid crystal projectors (LCP's) that generate the flexible images of targets, Badal otometers that change target distances without changing the visual angles, and relay-lens systems that change target directions. A special control program is developed for real-time control of six motors and two LCP's in the TVS together with a three-dimensional optometer III that simultaneously measures eye movement, accommodation, pupil diameter, and head movement. distance, 0 to -20 D; direction, 16 horizontally and 15 vertically; size, 0-2 deg visual angle; and luminance, 10-2-10 2 cd/m2. The target images are refreshed at 60 Hz and speeds with which the target makes a smooth change (ramp stimuli) are size, 10 deg/s. A simple application demonstrates the performance.

  5. Three-dimensional representations of complex carbohydrates and polysaccharides--SweetUnityMol: a video game-based computer graphic software.

    PubMed

    Pérez, Serge; Tubiana, Thibault; Imberty, Anne; Baaden, Marc

    2015-05-01

    A molecular visualization program tailored to deal with the range of 3D structures of complex carbohydrates and polysaccharides, either alone or in their interactions with other biomacromolecules, has been developed using advanced technologies elaborated by the video games industry. All the specific structural features displayed by the simplest to the most complex carbohydrate molecules have been considered and can be depicted. This concerns the monosaccharide identification and classification, conformations, location in single or multiple branched chains, depiction of secondary structural elements and the essential constituting elements in very complex structures. Particular attention was given to cope with the accepted nomenclature and pictorial representation used in glycoscience. This achievement provides a continuum between the most popular ways to depict the primary structures of complex carbohydrates to visualizing their 3D structures while giving the users many options to select the most appropriate modes of representations including new features such as those provided by the use of textures to depict some molecular properties. These developments are incorporated in a stand-alone viewer capable of displaying molecular structures, biomacromolecule surfaces and complex interactions of biomacromolecules, with powerful, artistic and illustrative rendering methods. They result in an open source software compatible with multiple platforms, i.e., Windows, MacOS and Linux operating systems, web pages, and producing publication-quality figures. The algorithms and visualization enhancements are demonstrated using a variety of carbohydrate molecules, from glycan determinants to glycoproteins and complex protein-carbohydrate interactions, as well as very complex mega-oligosaccharides and bacterial polysaccharides and multi-stranded polysaccharide architectures. PMID:25475093

  6. Three dimensional Dirac semimetals

    NASA Astrophysics Data System (ADS)

    Zaheer, Saad

    We extend the physics of graphene to three dimensional systems by showing that Dirac points can exist on the Fermi surface of realistic materials in three dimensions. Many of the exotic electronic properties of graphene can be ascribed to the pseudorelativistic behavior of its charge carriers due to two dimensional Dirac points on the Fermi surface. We show that certain nonsymmorphic spacegroups exhibit Dirac points among the irreducible representations of the appropriate little group at high symmetry points on the surface of the Brillouin zone. We provide a list of all Brillouin zone momenta in the 230 spacegroups that can host Dirac points. We describe microscopic considerations necessary to design materials in one of the candidate spacegroups such that the Dirac point appears at the Fermi energy without any additional non-Dirac-like Fermi pockets. We use density functional theory based methods to propose six new Dirac semimetals: BiO 2 and SbO2 in the beta-cristobalite lattice (spacegroup 227), and BiCaSiO4, BiMgSiO4, BiAlInO 4, and BiZnSiO4 in the distorted spinels lattice (spacegroup 74). Additionally we derive effective Dirac Hamiltonians given group representative operators as well as tight binding models incorporating spin-orbit coupling. Finally we study the Fermi surface of zincblende (spacegroup 216) HgTe which is effectively point-like at Gamma in the Brillouin zone and exhibits accidental degeneracies along a threefold rotation axis. Whereas compressive strain gaps the band structure into a topological insulator, tensile strain shifts the accidental degeneracies away from Gamma and enlarges the Fermi surface. States on the Fermi surface exhibit nontrivial spin texture marked by winding of spins around the threefold rotation axis and by spin vortices indicating a change in the winding number. This is confirmed by microscopic calculations performed in tensile strained HgTe and Hg0.5Zn 0.5 Te as well as k.p theory. We conclude with a summary of recent

  7. Automated software development workstation

    NASA Technical Reports Server (NTRS)

    1986-01-01

    Engineering software development was automated using an expert system (rule-based) approach. The use of this technology offers benefits not available from current software development and maintenance methodologies. A workstation was built with a library or program data base with methods for browsing the designs stored; a system for graphical specification of designs including a capability for hierarchical refinement and definition in a graphical design system; and an automated code generation capability in FORTRAN. The workstation was then used in a demonstration with examples from an attitude control subsystem design for the space station. Documentation and recommendations are presented.

  8. Astronomers as Software Developers

    NASA Astrophysics Data System (ADS)

    Pildis, Rachel A.

    2016-01-01

    Astronomers know that their research requires writing, adapting, and documenting computer software. Furthermore, they often have to learn new computer languages and figure out how existing programs work without much documentation or guidance and with extreme time pressure. These are all skills that can lead to a software development job, but recruiters and employers probably won't know that. I will discuss all the highly useful experience that astronomers may not know that they already have, and how to explain that knowledge to others when looking for non-academic software positions. I will also talk about some of the pitfalls I have run into while interviewing for jobs and working as a developer, and encourage you to embrace the curiosity employers might have about your non-standard background.

  9. Software For Simulation Of Development Of Software

    NASA Technical Reports Server (NTRS)

    Tausworthe, Robert C.

    1991-01-01

    SOFTREL is prototype software package simulating creation, detection, and repair of defects and faults during software-development project. Personnel, resources, errors, and other realistic factors represented in simulation. Available in executable form only for IBM PC. SOFTREL is copyrighted work with all copyright vested in NASA.

  10. Payload software technology: Software technology development plan

    NASA Technical Reports Server (NTRS)

    1977-01-01

    Programmatic requirements for the advancement of software technology are identified for meeting the space flight requirements in the 1980 to 1990 time period. The development items are described, and software technology item derivation worksheets are presented along with the cost/time/priority assessments.

  11. A study of the application of singular perturbation theory. [development of a real time algorithm for optimal three dimensional aircraft maneuvers

    NASA Technical Reports Server (NTRS)

    Mehra, R. K.; Washburn, R. B.; Sajan, S.; Carroll, J. V.

    1979-01-01

    A hierarchical real time algorithm for optimal three dimensional control of aircraft is described. Systematic methods are developed for real time computation of nonlinear feedback controls by means of singular perturbation theory. The results are applied to a six state, three control variable, point mass model of an F-4 aircraft. Nonlinear feedback laws are presented for computing the optimal control of throttle, bank angle, and angle of attack. Real Time capability is assessed on a TI 9900 microcomputer. The breakdown of the singular perturbation approximation near the terminal point is examined Continuation methods are examined to obtain exact optimal trajectories starting from the singular perturbation solutions.

  12. Coastal flooding and storm protection program; field verification program. Mathematical modeling of three-dimensional coastal currents and sediment dispersion: model development and application. Final report

    SciTech Connect

    Sheng, Y.P.

    1983-09-01

    A comprehensive model of Coastal currents and sediment dispersion has been formulated and applied to the Mississippi Sound and adjacent continental shelf waters. The study combines mathematical modeling of various hydrodynamic and sedimentary processes with laboratory and field experiments. Of primary importance is the development of an efficient and comprehensive three-dimensional, finite-difference model of coastal, estuarine, and lake currents (CELC3D). The model resolves currents driven by tide, wind, and density gradient. It has been applied to the Mississippi Sound, and results agree well with measured surface displacements and currents during two episodes. Rates of entrainment and deposition of the Mississippi Sound sediments have been studied in a laboratory flume. Effects of (1) bottom shear stress, (2) bed properties, (3) salinity of water, and (4) sediment type on the erodability of sediments have been examined. Results of the laboratory study have been incorporated into the bottom boundary conditions for a three-dimensional sediment dispersion model. Gravitational settling and particle size distribution of the Mississippi Sound sediments were also studied in laboratories. Bottom boundary layer dynamics and wave effect on sediment dispersion have been studied by means of a turbulent transport model and a wave model. Model simulations of sediment dispersion in the Mississippi Sound agree well available data from ship surveys.

  13. Three-Dimensional Distribution of UBF and Nopp140 in Relationship to Ribosomal DNA Transcription During Mouse Preimplantation Development.

    PubMed

    Koné, Maïmouna Coura; Fleurot, Renaud; Chebrout, Martine; Debey, Pascale; Beaujean, Nathalie; Bonnet-Garnier, Amélie

    2016-04-01

    The nucleolus is a dynamic nuclear compartment that is mostly involved in ribosome subunit biogenesis; however, it may also play a role in many other biological processes, such as stress response and the cell cycle. Mainly using electron microscopy, several studies have tried to decipher how active nucleoli are set up during early development in mice. In this study, we analyzed nucleologenesis during mouse early embryonic development using 3D-immunofluorescent detection of UBF and Nopp140, two proteins associated with different nucleolar compartments. UBF is a transcription factor that helps maintain the euchromatic state of ribosomal genes; Nopp140 is a phosphoprotein that has been implicated in pre-rRNA processing. First, using detailed image analyses and the in situ proximity ligation assay technique, we demonstrate that UBF and Nopp140 dynamic redistribution between the two-cell and blastocyst stages (time of implantation) is correlated with morphological and structural modifications that occur in embryonic nucleolar compartments. Our results also support the hypothesis that nucleoli develop at the periphery of nucleolar precursor bodies. Finally, we show that the RNA polymerase I inhibitor CX-5461: 1) disrupts transcriptional activity, 2) alters preimplantation development, and 3) leads to a complete reorganization of UBF and Nopp140 distribution. Altogether, our results underscore that highly dynamic changes are occurring in the nucleoli of embryos and confirm a close link between ribosomal gene transcription and nucleologenesis during the early stages of development. PMID:26984997

  14. Analysis of Three-Dimensional, Nonlinear Development of Wave-Like Structure in a Compressible Round Jet

    NASA Technical Reports Server (NTRS)

    Dahl, Milo D.; Mankbadi, Reda R.

    2002-01-01

    An analysis of the nonlinear development of the large-scale structures or instability waves in compressible round jets was conducted using the integral energy method. The equations of motion were decomposed into two sets of equations; one set governing the mean flow motion and the other set governing the large-scale structure motion. The equations in each set were then combined to derive kinetic energy equations that were integrated in the radial direction across the jet after the boundary-layer approximations were applied. Following the application of further assumptions regarding the radial shape of the mean flow and the large structures, equations were derived that govern the nonlinear, streamwise development of the large structures. Using numerically generated mean flows, calculations show the energy exchanges and the effects of the initial amplitude on the coherent structure development in the jet.

  15. A three-dimensional digital atlas of the zebrafish brain.

    PubMed

    Ullmann, Jeremy F P; Cowin, Gary; Kurniawan, Nyoman D; Collin, Shaun P

    2010-05-15

    In the past three decades, the zebrafish has become a vital animal model in a range of biological sciences. To augment current neurobiological research, we have developed the first three-dimensional digital atlas of the zebrafish brain from T2-weighted magnetic resonance histology (MRH) images acquired on a 16.4-T superconducting magnet. We achieved an isotropic resolution of 10 microm, which is the highest resolution achieved in a vertebrate brain and, for the first time, is comparable in slice thickness to conventional histology. By using manual segmentation, 53 anatomical structures, including fiber tracts as small as 40 microm, were delineated. Using Amira software, structures were also individually segmented and reconstructed to create three-dimensional animations. Additional quantitative information including, volume, surface areas, and mean gray scale intensities were also determined. Finally, we established a stereotaxic coordinate system as a framework in which maps created from other modalities can be incorporated into the atlas. PMID:20139016

  16. Paleo-tribology: development of wear measurement techniques and a three-dimensional model revealing how grinding dentitions self-wear to enable functionality

    NASA Astrophysics Data System (ADS)

    Erickson, Gregory M.; Sidebottom, Mark A.; Curry, John F.; Kay, David Ian; Kuhn-Hendricks, Stephen; Norell, Mark A.; Sawyer, W. Gregory; Krick, Brandon A.

    2016-06-01

    In most mammals and a rare few reptilian lineages the evolution of precise dental occlusion led to the capacity to form functional chewing surfaces due to pressures generated while feeding. The complex dental architectures of such teeth and the biomechanics of their self-wearing nature are poorly understood. Our research team composed of paleontologists, evolutionary biologists, and engineers have developed a protocol to: (1) determine the histological make-up of grinding dentitions in extant and fossil taxa; (2) ascertain wear-relevant material properties of the tissues; (3) determine how those properties relate to inter-tissue-biomechanics leading the dental functionality using a three-dimensional Archard’s wear model developed specifically for dental applications; (4) analyze those data in phylogenetic contexts to infer evolutionary patterns as they relate to feeding. Finally we discuss industrial applications that are emerging from our paleontologically-inspired research.

  17. A three-dimensional simulation of transition and early turbulence in a time-developing mixing layer

    NASA Technical Reports Server (NTRS)

    Cain, A. B.; Reynolds, W. C.; Ferziger, J. H.

    1981-01-01

    The physics of the transition and early turbulence regimes in the time developing mixing layer was investigated. The sensitivity of the mixing layer to the disturbance field of the initial condition is considered. The growth of the momentum thickness, the mean velocity profile, the turbulence kinetic energy, the Reynolds stresses, the anisotropy tensor, and particle track pictures of computations are all examined in an effort to better understand the physics of these regimes. The amplitude, spectrum shape, and random phases of the initial disturbance field were varied. A scheme of generating discrete orthogonal function expansions on some nonuniform grids was developed. All cases address the early or near field of the mixing layer. The most significant result shows that the secondary instability of the mixing layer is produced by spanwise variations in the straining field of the primary vortex structures.

  18. Finite-element procedure for calculating the three-dimensional inelastic bowing of fuel rods (AWBA development program)

    SciTech Connect

    Martin, S E

    1982-05-01

    An incremental finite element procedure is developed for calculating the in-pile lateral bowing of nuclear fuel rods. The fuel rod is modeled as a viscoelastic beam whose material properties are derived as perturbations of the results of an axisymmetric stress analysis of the fuel rod. The effects which are taken into account in calculating the rod's lateral bowing include: (a) lateral, axial, and rotational motions and forces at the rod supports, (b) transverse gradients of temperature, fast-neutron flux, and fissioning rate, and (c) cladding circumferential wall thickness variation. The procedure developed in this report could be used to form the basis for a computer program to calculate the time-dependent bowing as a function of the fuel rod's operational and environmental history.

  19. Flapping before Flight: High Resolution, Three-Dimensional Skeletal Kinematics of Wings and Legs during Avian Development

    PubMed Central

    Heers, Ashley M.; Baier, David B.; Jackson, Brandon E.; Dial, Kenneth P.

    2016-01-01

    Some of the greatest transformations in vertebrate history involve developmental and evolutionary origins of avian flight. Flight is the most power-demanding mode of locomotion, and volant adult birds have many anatomical features that presumably help meet these demands. However, juvenile birds, like the first winged dinosaurs, lack many hallmarks of advanced flight capacity. Instead of large wings they have small “protowings”, and instead of robust, interlocking forelimb skeletons their limbs are more gracile and their joints less constrained. Such traits are often thought to preclude extinct theropods from powered flight, yet young birds with similarly rudimentary anatomies flap-run up slopes and even briefly fly, thereby challenging longstanding ideas on skeletal and feather function in the theropod-avian lineage. Though skeletons and feathers are the common link between extinct and extant theropods and figure prominently in discussions on flight performance (extant birds) and flight origins (extinct theropods), skeletal inter-workings are hidden from view and their functional relationship with aerodynamically active wings is not known. For the first time, we use X-ray Reconstruction of Moving Morphology to visualize skeletal movement in developing birds, and explore how development of the avian flight apparatus corresponds with ontogenetic trajectories in skeletal kinematics, aerodynamic performance, and the locomotor transition from pre-flight flapping behaviors to full flight capacity. Our findings reveal that developing chukars (Alectoris chukar) with rudimentary flight apparatuses acquire an “avian” flight stroke early in ontogeny, initially by using their wings and legs cooperatively and, as they acquire flight capacity, counteracting ontogenetic increases in aerodynamic output with greater skeletal channelization. In conjunction with previous work, juvenile birds thereby demonstrate that the initial function of developing wings is to enhance leg

  20. Flapping before Flight: High Resolution, Three-Dimensional Skeletal Kinematics of Wings and Legs during Avian Development.

    PubMed

    Heers, Ashley M; Baier, David B; Jackson, Brandon E; Dial, Kenneth P

    2016-01-01

    Some of the greatest transformations in vertebrate history involve developmental and evolutionary origins of avian flight. Flight is the most power-demanding mode of locomotion, and volant adult birds have many anatomical features that presumably help meet these demands. However, juvenile birds, like the first winged dinosaurs, lack many hallmarks of advanced flight capacity. Instead of large wings they have small "protowings", and instead of robust, interlocking forelimb skeletons their limbs are more gracile and their joints less constrained. Such traits are often thought to preclude extinct theropods from powered flight, yet young birds with similarly rudimentary anatomies flap-run up slopes and even briefly fly, thereby challenging longstanding ideas on skeletal and feather function in the theropod-avian lineage. Though skeletons and feathers are the common link between extinct and extant theropods and figure prominently in discussions on flight performance (extant birds) and flight origins (extinct theropods), skeletal inter-workings are hidden from view and their functional relationship with aerodynamically active wings is not known. For the first time, we use X-ray Reconstruction of Moving Morphology to visualize skeletal movement in developing birds, and explore how development of the avian flight apparatus corresponds with ontogenetic trajectories in skeletal kinematics, aerodynamic performance, and the locomotor transition from pre-flight flapping behaviors to full flight capacity. Our findings reveal that developing chukars (Alectoris chukar) with rudimentary flight apparatuses acquire an "avian" flight stroke early in ontogeny, initially by using their wings and legs cooperatively and, as they acquire flight capacity, counteracting ontogenetic increases in aerodynamic output with greater skeletal channelization. In conjunction with previous work, juvenile birds thereby demonstrate that the initial function of developing wings is to enhance leg

  1. Three-dimensional mapping of mechanical activation patterns, contractile dyssynchrony and dyscoordination by two-dimensional strain echocardiography: Rationale and design of a novel software toolbox

    PubMed Central

    De Boeck, Bart WL; Kirn, Borut; Teske, Arco J; Hummeling, Ralph W; Doevendans, Pieter A; Cramer, Maarten J; Prinzen, Frits W

    2008-01-01

    echocardiographic deformation data into a 3-D model by dedicated software allows a comprehensive analysis of spatio-temporal distribution patterns of myocardial dyssynchrony, of the global left ventricular deformation and of newer indices that may better reflect myocardial dyscoordination and/or impaired ventricular contractile efficiency. The potential value of such an analysis is highlighted in two dyssynchronous pathologies that impose particular challenges to deformation imaging. PMID:18513412

  2. Development of a fast ultrasonic three-dimensional imaging system for diagnosing blood vessels of artificial-kidney-dialyzed patients

    NASA Astrophysics Data System (ADS)

    Akahane, Mutsuhiro; Mochizuki, Takashi; Yamashita, Yuko; Kasai, Chihiro; Kobayashi, Masayuki; Kishino, Osamu; Ogawa, Tomoya

    2001-05-01

    It is very important to observe the vessels of the patient who are dialyzed artificially. An X-ray examination using contrast medium injected to the patient has been used for this purpose up to the present, but sometimes the examination has a risk of radiation damage. Therefore, we developed a safe and easy-to-use system in which 3D images of the vessels in the patients are reconstructed very quick from ultrasonic echoes. In this system, a view point for 3D rendering is set on the above position of the ultrasonic transducer, and a ray for the rendering is coincided with an ultrasonic beam. These features enable 3D images to be gradually reconstructed in real time while the echoes are being received. A magnetic position sensor system and a special 3D scanner which was developed were adopted for acquiring 3D echo data. In signal processing, intensity inversion technology is carried out before the 3D rendering process in order to detect and emphasize the vessels. With this system, we have acquired echo signals from the vessels in the arm of kidney dialyzed patients and made similar 3D images of X-ray angiography with the echoes in a short time such as 4 to 8 seconds.

  3. LDAR, A Three-Dimensional Lightning Warning System: Its Development and Use by the Government, and Transition to Public Availability

    NASA Technical Reports Server (NTRS)

    Starr, Stan; Sharp, David; Merceret, Francis; Madura, John; Murphy, Martin

    1998-01-01

    NASA, at the John F. Kennedy Space Center (KSC), developed and operates a unique high precision lightning location system to provide lightning related weather warnings. These warnings are used to stop lightning-sensitive operations such as space vehicle launches and ground operations where equipment and personnel are at risk. The data is provided to the Range Weather Operations [45th Weather Squadron, U. S. Air Force (USAF)] where it is used with other meteorological data to issue weather advisories and warnings for Cape Canaveral Air Station (CCAS) and KSC operations. This system, called Lightning Detection and Ranging (LDAR), provides users with a graphical display in three dimensions of 66 MHz radio frequency events generated by lightning processes. The locations of these events provide a sound basis for the prediction of lightning hazards. NASA and Global Atmospherics, Inc. are developing a new system that will replace the unique LDAR components with commercially available and maintainable components having improved capabilities. These components will be phased in to ensure full continuity and access to this important warning technology. These LDAR systems are expected to eventually be available for installation and use by the public at specialized facilities, such as airports, and for general weather warnings via the National Weather Service (NWS) or television broadcast. The NWS in Melbourne has had access to real-time LDAR data since 1993 on an experimental basis. This use of LDAR has shown promise for the improvement of aviation forecasts and severe weather warnings. More so, it has opened the door to investigate the feasibility of issuing lightning-related public advisories. The success of its early use suggests that this technology may improve safety and potentially save lives, therefore constituting a significant benefit to the public. This paper describes the LDR system, the plans and progress of these upgrades, and the potential benefits of its use.

  4. Development of a practical fuel management system for PSBR based on advanced three-dimensional Monte Carlo coupled depletion methodology

    NASA Astrophysics Data System (ADS)

    Tippayakul, Chanatip

    The main objective of this research is to develop a practical fuel management system for the Pennsylvania State University Breazeale research reactor (PSBR) based on several advanced Monte Carlo coupled depletion methodologies. Primarily, this research involved two major activities: model and method developments and analyses and validations of the developed models and methods. The starting point of this research was the utilization of the earlier developed fuel management tool, TRIGSIM, to create the Monte Carlo model of core loading 51 (end of the core loading). It was found when comparing the normalized power results of the Monte Carlo model to those of the current fuel management system (using HELIOS/ADMARC-H) that they agreed reasonably well (within 2%--3% differences on average). Moreover, the reactivity of some fuel elements was calculated by the Monte Carlo model and it was compared with measured data. It was also found that the fuel element reactivity results of the Monte Carlo model were in good agreement with the measured data. However, the subsequent task of analyzing the conversion from the core loading 51 to the core loading 52 using TRIGSIM showed quite significant difference of each control rod worth between the Monte Carlo model and the current methodology model. The differences were mainly caused by inconsistent absorber atomic number densities between the two models. Hence, the model of the first operating core (core loading 2) was revised in light of new information about the absorber atomic densities to validate the Monte Carlo model with the measured data. With the revised Monte Carlo model, the results agreed better to the measured data. Although TRIGSIM showed good modeling and capabilities, the accuracy of TRIGSIM could be further improved by adopting more advanced algorithms. Therefore, TRIGSIM was planned to be upgraded. The first task of upgrading TRIGSIM involved the improvement of the temperature modeling capability. The new TRIGSIM was

  5. Software development in Ada

    NASA Technical Reports Server (NTRS)

    Basili, V. R.; Katz, E. E.

    1985-01-01

    Ada will soon become a part of systems developed for the US Department of Defense. NASA must determine whether it will become part of its environment and particularly whether it will become a part fo the space station development. However, there are several issues about Ada which should be considered before this decision is made. One means of considering these issues is the examination of other developments in Ada. Unfortunately, few full scale developments have been completed or made publicly available for observation. Therefore, it will probably be necessary to study an Ada development in a NASA environment. Another means related to the first is the development of Ada metrics which can be used to characterize and evaluate Ada developments. These metrics need not be confined to full scale developments and could be used to evaluate on going projects as well. An early development in Ada, some observations from that development, metrics which were developed for use with Ada, and future directions for research into the use of Ada in software development in general and in the NASA Goddard environment in particular are described.

  6. Three-dimensional urban GIS for Atlanta

    NASA Astrophysics Data System (ADS)

    Bhaumik, Dharmajyoti; Faust, Nickolas L.; Estrada, Diana; Linares, Jairo

    1997-07-01

    Georgia Tech has developed a prototype system for the demonstration of the concepts of a virtual 3D geographic information system (GIS) in an urban environment. The virtual GIS integrates the technologies of GIS, remote sensing, and visualization to provide an interactive tool for the exploration of spatial data. A high density urban environment with terrain elevation, imagery, GIS layers, and three dimensional natural and manmade features is a stressing test for the integration potential of such a virtual 3D GIS. In preparation for the 1996 Olympic Games, Georgia Tech developed two highly detailed 3D databases over parts of Atlanta. A 2.5 meter database was used to depict the downtown Atlanta area with much higher resolution imagery being used for photo- texture of individual Atlanta buildings. Less than 1 meter imagery data was used to show a very accurate map of Georgia Tech, the 1996 Olympic Village. Georgia Tech developed visualization software was integrated via message passing with a traditional GIS package so that all commonly used GIS query and analysis functions could be applied within the 3D environment. This project demonstrates the versatility and productivity that can be accomplished by operating GIS functions within a virtual GIS and multi-media framework.

  7. Development and characterization of a three-dimensional co-culture model of tumor T cell infiltration.

    PubMed

    Alonso-Nocelo, M; Abuín, C; López-López, R; de la Fuente, M

    2016-01-01

    Tumor growth and metastasis entangle the alteration and recruitment of non-malignant cells to the primary tumor, among them immune cells, constituting the tumor microenvironment (TME). Communication between tumor cells and their stroma has been shown as a fundamental driving force of the tumoral process. A great deal of effort has been focused on depicting their specific interactions and crosstalk. However, most research has been carried out in 2D conventional cultures that alter cell morphology and intracellular signaling processes. Considering these premises, we have developed a 3D cell co-culture model to mimic T cell infiltration into the tumor mass and explore tumor-immune cells interactions in the TME. Expression of specific cell markers and assessment of cell proliferation were carried out to characterize the proposed 3D co-culture model. Additionally, the study and profiling of the secretome revealed a subset of particular cancer-related inflammation proteins prompted upon 3D cultivation of tumor cells in presence of lymphocytes, pointing out an intercellular communication. Altogether, these results suggest that our 3D cell co-culture model can be a useful tool to identify and study critical factors mediating the crosstalk between tumor and immune cells in the TME. Finally, the potential of this model as a drug-screening platform has been explored using docetaxel as a model antitumoral compound. PMID:27078888

  8. Development of a pulsed neutron three-dimensional imaging system using a highly sensitive image-intensifier at J-PARC

    NASA Astrophysics Data System (ADS)

    Segawa, M.; Ooi, M.; Kai, T.; Shinohara, T.; Kureta, M.; Sakamoto, K.; Imaki, T.

    2015-01-01

    To realize neutron energy resolved three-dimensional (3D) imaging in the resonance neutron energy region, a camera system coupled with a high sensitivity and high frame-rate gating image-intensifier was developed. The resonance absorption 3D imaging was successfully demonstrated at the pulsed neutron source of the Japan Proton Accelerator Research Complex (J-PARC). The camera system allowed us to obtain a time-of-flight (TOF) image of 2352 (W)×1726 (H) pixels resolved into a narrow energy range. 3D images with enhanced contrast at corresponding resonance energy regions for cylindrical Au, Ta, and In samples were reconstructed by convolution filtered back-projection (FBP) and maximum likelihood expectation maximization (MLEM) methods. The spatial resolution in the depth direction was evaluated experimentally to be approximately 1 mm. Our results show that the system could have applications in industrial fields.

  9. Development and application of a program to calculate transonic flow around an oscillating three-dimensional wing using finite difference procedures

    NASA Technical Reports Server (NTRS)

    Weatherill, Warren H.; Ehlers, F. Edward

    1989-01-01

    A finite difference method for solving the unsteady transonic flow about harmonically oscillating wings is investigated. The procedure is based on separating the velocity potential into steady and unsteady parts and linearizing the resulting unsteady differential equation for small disturbances. The differential equation for the unsteady potential is linear with spatially varying coefficients and with the time variable eliminated by assuming harmonic motion. Difference equations are derived for harmonic transonic flow to include a coordinate transformation for swept and tapered planforms. A pilot program is developed for three-dimensional planar lifting surface configurations (including thickness) for the CRAY-XMP at Boeing Commercial Airplanes and for the CYBER VPS-32 at the NASA Langley Research Center. An investigation is made of the effect of the location of the outer boundaries on accuracy for very small reduced frequencies. Finally, the pilot program is applied to the flutter analysis of a rectangular wing.

  10. Development and validation of a black carbon mixing state resolved three-dimensional model: Aging processes and radiative impact

    SciTech Connect

    Matsui, H.; Koike, Makoto; Kondo, Yutaka; Moteki, N.; Fast, Jerome D.; Zaveri, Rahul A.

    2013-03-16

    : A new two-dimensional aerosol bin scheme, which resolves both aerosol size and black carbon (BC) mixing state for BC aging processes (e.g., condensation and coagulation), has been developed and implemented into the WRF-chem model (MS-resolved WRF-chem). The mixing state of BC simulated by this model is compared with direct measurements over the East Asian region in spring 2009. Model simulations generally reproduce the observed features of the BC mixing state, such as the size-dependent number fractions of BC-containing and BC-free particles and the coating thickness of BC-containing particles. Sensitivity simulations show that the condensation process is dominant for the growth of thinly coated BC particles, while the coagulation process is necessary to produce thickly coated BC particles. Off-line optical and radiative calculations assuming an average mixing state for each size bin show that the domain- and period-averaged absorption coefficient and heating rate by aerosols are overestimated by 30 – 40% in the boundary layer compared with a benchmark simulation with the detailed treatment of mixing state. The absolute value of aerosol radiative forcing is also overestimated (10%, 3 W m-2) at the surface. However, these overestimations are reduced considerably when all the parameters (including mass and number concentration) are calculated with the simple treatment of mixing state. This is because the overestimation of radiative parameters due to higher absorption efficiency (compared with the benchmark simulation) is largely canceled by the underestimation of BC concentrations due to efficient wet removal processes. The overall errors in radiative forcing can be much smaller because of this cancellation but for the wrong reasons.

  11. Development and validation of a black carbon mixing state resolved three-dimensional model: Aging processes and radiative impact

    NASA Astrophysics Data System (ADS)

    Matsui, H.; Koike, M.; Kondo, Y.; Moteki, N.; Fast, J. D.; Zaveri, R. A.

    2013-03-01

    A new two-dimensional aerosol bin scheme, which resolves both aerosol size and black carbon (BC) mixing state for BC aging processes (e.g., condensation and coagulation) with 12 size × 10 mixing state bins, has been developed and implemented into the WRF-chem model (MS-resolved WRF-chem). The mixing state of BC simulated by this model is compared with direct measurements over the East Asian region in spring 2009. Model simulations generally reproduce the observed features of the BC mixing state, such as the size-dependent number fractions of BC-containing and BC-free particles and the coating thickness of BC-containing particles. This result shows that the model can simulate realistic BC mixing states in the atmosphere if condensation and coagulation processes are calculated explicitly with the detailed treatment of BC mixing state. Sensitivity simulations show that the condensation process is dominant for the growth of thinly coated BC particles, while the coagulation process is necessary to produce thickly coated BC particles. Off-line optical and radiative calculations assuming an average mixing state for each size bin show that the domain- and period-averaged absorption coefficient and heating rate by aerosols are overestimated by 30-40% in the boundary layer, compared with a benchmark simulation with the detailed treatment of mixing state. The absolute value of aerosol radiative forcing is also overestimated (10%, 3 W m-2) at the surface. However, these overestimations are reduced considerably when all the parameters (including mass and number concentration) are calculated with the simple treatment of mixing state. This is because the overestimation of radiative parameters due to higher absorption efficiency (compared with the benchmark simulation) is largely canceled by the underestimation of BC concentrations due to efficient wet removal processes. The overall errors in radiative forcing can be much smaller because of this cancellation, but for the wrong

  12. Three dimensional responsive structure of tough hydrogels

    NASA Astrophysics Data System (ADS)

    Yang, Xuxu; Ma, Chunxin; Li, Chi; Xie, Yuhan; Huang, Xiaoqiang; Jin, Yongbin; Zhu, Ziqi; Liu, Junjie; Li, Tiefeng

    2015-04-01

    Three dimensional responsive structures have high value for the application of responsive hydrogels in various fields such as micro fluid control, tissue engineering and micro robot. Whereas various hydrogels with stimuli-responsive behaviors have been developed, designing and fabricating of the three dimensional responsive structures remain challenging. We develop a temperature responsive double network hydrogel with novel fabrication methods to assemble the complex three dimensional responsive structures. The shape changing behavior of the structures can be significantly increased by building blocks with various responsiveness. Mechanical instability is built into the structure with the proper design and enhance the performance of the structure. Finite element simulation are conducted to guide the design and investigate the responsive behavior of the hydrogel structures

  13. Three-dimensional, subsurface imaging synthetic aperture radar

    SciTech Connect

    Moussally, G.J.

    1994-11-01

    The objective of this applied research and devolpment project is to develop a system known as 3-D SISAR. This sytem consists of a gound penetrating radar with software algorithms designed for detection, location, and identification of buried objects in the underground hazardous waste environments found at US DOE storage sites. Three-dimensional maps can assist the development of remdiation strategies and characterization of the digface during remediation. The system should also be useful for monitoring hydrocarbon-based contaminant migration after remediation. 5 figs.

  14. NON-NRC FUNDED RELAP5-3D VERSION 4.x.x SOFTWARE REACTOR EXCURSION AND LEAK ANALYSIS PACKAGE - THREE DIMENSIONAL

    Energy Science and Technology Software Center (ESTSC)

    2012-03-26

    The RELAP5-3D Version 3.x code has been developed for best-estimate transient simulation of nuclear reactor coolant systems during postulated accidents. The code models the coupled behavior of the reactor coolant system and the core for loss-of-coolant accidents and operational transients such as anticipated transient without scram, loss of offsite power, loss of feedwater, and loss of flow. A generic modeling approach is used that permits simulating a variety of thermal hydraulic systems including pressurized watermore » reactors, boiling water reactors, Soviet-designed reactors, heavy water reactors, gas-cooled reactors, liquid metal and molten salt cooled reactors, and even fusion reactors. Numerical models include multi-dimensional hydrodynamics, 1- and 2-D heat transfer in metal walls, 0-, 1-, 2-, and 3-D neutron kinetics, trips, and control systems. Secondary system components are included to permit modeling of plant controls, turbines, condensers, and secondary feedwater systems.« less

  15. NON-NRC FUNDED RELAP5-3D VERSION 4.x.x SOFTWARE REACTOR EXCURSION AND LEAK ANALYSIS PACKAGE - THREE DIMENSIONAL

    SciTech Connect

    2012-03-26

    The RELAP5-3D Version 3.x code has been developed for best-estimate transient simulation of nuclear reactor coolant systems during postulated accidents. The code models the coupled behavior of the reactor coolant system and the core for loss-of-coolant accidents and operational transients such as anticipated transient without scram, loss of offsite power, loss of feedwater, and loss of flow. A generic modeling approach is used that permits simulating a variety of thermal hydraulic systems including pressurized water reactors, boiling water reactors, Soviet-designed reactors, heavy water reactors, gas-cooled reactors, liquid metal and molten salt cooled reactors, and even fusion reactors. Numerical models include multi-dimensional hydrodynamics, 1- and 2-D heat transfer in metal walls, 0-, 1-, 2-, and 3-D neutron kinetics, trips, and control systems. Secondary system components are included to permit modeling of plant controls, turbines, condensers, and secondary feedwater systems.

  16. The distributed development environment for SDSS software

    SciTech Connect

    Berman, E.; Gurbani, V.; Mackinnon, B.; Newberg, H.; Nicinski, T.; Petravick, D.; Pordes, R.; Sergey, G.; Stoughton, C.; Lupton, R.

    1994-12-31

    The authors present an integrated science software development environment, code maintenance and support system for the Sloan Digital Sky Survey (SDSS) now being actively used throughout the collaboration. The SDSS is a collaborative effort between Fermi National Accelerator Laboratory, the U. of Chicago, Princeton University, the Institute for Advanced Study, The John Hopkins University, U. of Washington, the U.S. Naval Observatory and the Japan Promotion Group. Its main results will be an imaging survey of 10{sup 4}deg{sup 2} and a red shift spectroscopic survey of 10{sup 6} galaxies and 10{sup 5} quasars producing approximately 1.2 {times} 10{sup 13} bytes of data over the 5 year running period (1995-2000). This will produce a three dimensional map of the Universe.

  17. Coupled three-dimensional conduction and natural convection heat transfer

    NASA Astrophysics Data System (ADS)

    Tolpadi, Anil Kumar

    1987-09-01

    A numerical and experimental investigation of three-dimensional natural convection heat transfer coupled with conduction was performed. This general problem is of great importance because of its widespread applicability in areas such as compact natural convection heat exchangers, cooling of electronic equipment, and porous media flows. The determination of flow patterns and heat transfer coefficients in such situations is necessary because of its practical use in various industries. A vectorized finite difference code was developed for the Cray-2 supercomputer which has the capability of simulating a wide class of three-dimensional coupled conduction-convection problems. This program numerically solves the transient form of the complete laminar Navier-Stokes equations of motion using the vorticity-vector potential methods. Using this program, numerical solutions were obtained for 3-D natural convection from a horizontal isothermal heat exchanger tube with an attached circular cooling fin array. Experiments were performed to measure three-dimensional temperature fields using Mach-Zehnder interferometry. Software was developed to digitize and process fringe patterns and inversion algorithms used to compute the 3-D temperature field.

  18. Software developments for gammasphere

    SciTech Connect

    Lauritsen, T.; Ahmad, I.; Carpenter, M.P.

    1995-08-01

    This year marked the year when data acquisition development for Gammasphere evolved from planning to accomplishment, both in hardware and software. Two VME crates now contain about 10 crate-processors which are used to handle the data from VXI processors - which in turn collect the data from germanium and BGO detectors in the array. The signals from the detectors are processed and digitized in custom-built electronics boards. The processing power in the VME crates is used to digitally filter the data before they are written to tape. The goal is to have highly processed data flowing to tape, eliminating the off-line filtering and manipulation of data that was standard procedure in earlier experiments.

  19. Three-dimensional marginal separation

    NASA Technical Reports Server (NTRS)

    Duck, Peter W.

    1988-01-01

    The three dimensional marginal separation of a boundary layer along a line of symmetry is considered. The key equation governing the displacement function is derived, and found to be a nonlinear integral equation in two space variables. This is solved iteratively using a pseudo-spectral approach, based partly in double Fourier space, and partly in physical space. Qualitatively, the results are similar to previously reported two dimensional results (which are also computed to test the accuracy of the numerical scheme); however quantitatively the three dimensional results are much different.

  20. Specifications for the development of a fully three-dimensional numerical groundwater model for regional mass transport of radionuclides from a deep waste repository

    SciTech Connect

    Prickett, T.A.

    1980-04-01

    Specifications are given which are necessary to develop a three-dimensional numerical model capable of simulating regional mass transport of radionuclides from a deep waste repository. The model to be developed will include all of the significant mass transport processes including flow, chemical, and thermal advection, mechanical dispersion, molecular diffusion, ion exchange reactions, and radioactive decay. The model specifications also include that density and viscosity fluid properties be functions of pressure, temperature, and concentration and take into account fluid and geologic heterogenieties by allowing possible assignment of individual values to every block of the model. The model specifications furthermore include the repository shape, input/output information, boundary conditions, and the need for documentation and a user's manual. Model code validation can be accomplished with the included known analytical or laboratory solutions. It is recommended that an existing finite-difference model (developed by INTERCOMP and INTERA, Inc.) be used as a starting point either as an acceptable basic code for modification or as a pattern for the development of a completely different numerical scheme. A ten-step plan is given to outline the general procedure for development of the code.

  1. Three-dimensional models for studying development and disease: moving on from organisms to organs-on-a-chip and organoids.

    PubMed

    Jackson, E L; Lu, H

    2016-06-13

    Human development and disease are challenging to study because of lack of experimental accessibility to in vivo systems and the complex nature of biological processes. For these reasons researchers turn to the use of model systems, ranging in complexity and scale from single cells to model organisms. While the use of model organisms is valuable for studying physiology and pathophysiology in an in vivo context and for aiding pre-clinical development of therapeutics, animal models are costly, difficult to interrogate, and not always equivalent to human biology. For these reasons, three-dimensional (3D) cell cultures have emerged as an attractive model system that contains key aspects of in vivo tissue and organ complexity while being more experimentally tractable than model organisms. In particular, organ-on-a-chip and organoid models represent orthogonal approaches that have been able to recapitulate characteristics of physiology and disease. Here, we review advances in these two categories of 3D cultures and applications in studying development and disease. Additionally, we discuss development of key technologies that facilitate the generation of 3D cultures, including microfluidics, biomaterials, genome editing, and imaging technologies. PMID:27156572

  2. Gammasphere software development. Progress report

    SciTech Connect

    Piercey, R.B.

    1994-01-01

    This report describes the activities of the nuclear physics group at Mississippi State University which were performed during 1993. Significant progress has been made in the focus areas: chairing the Gammasphere Software Working Group (SWG); assisting with the porting and enhancement of the ORNL UPAK histogramming software package; and developing standard formats for Gammasphere data products. In addition, they have established a new public ftp archive to distribute software and software development tools and information.

  3. Three dimensional colorimetric assay assemblies

    SciTech Connect

    Charych, D.; Reichart, A.

    2000-06-27

    A direct assay is described using novel three-dimensional polymeric assemblies which change from a blue to red color when exposed to an analyte, in one case a flu virus. The assemblies are typically in the form of liposomes which can be maintained in a suspension, and show great intensity in their color changes. Their method of production is also described.

  4. Creating Three-Dimensional Scenes

    ERIC Educational Resources Information Center

    Krumpe, Norm

    2005-01-01

    Persistence of Vision Raytracer (POV-Ray), a free computer program for creating photo-realistic, three-dimensional scenes and a link for Mathematica users interested in generating POV-Ray files from within Mathematica, is discussed. POV-Ray has great potential in secondary mathematics classrooms and helps in strengthening students' visualization…

  5. Three dimensional colorimetric assay assemblies

    DOEpatents

    Charych, Deborah; Reichart, Anke

    2000-01-01

    A direct assay is described using novel three-dimensional polymeric assemblies which change from a blue to red color when exposed to an analyte, in one case a flu virus. The assemblies are typically in the form of liposomes which can be maintained in a suspension, and show great intensity in their color changes. Their method of production is also described.

  6. Three-Dimensional Lissajous Figures.

    ERIC Educational Resources Information Center

    D'Mura, John M.

    1989-01-01

    Described is a mechanically driven device for generating three-dimensional harmonic space figures with different frequencies and phase angles on the X, Y, and Z axes. Discussed are apparatus, viewing stereo pairs, equations of motion, and using space figures in classroom. (YP)

  7. The meaning and measurement of work fatigue: Development and evaluation of the Three-Dimensional Work Fatigue Inventory (3D-WFI).

    PubMed

    Frone, Michael R; Tidwell, Marie-Cecile O

    2015-07-01

    Although work fatigue represents an important construct in several substantive areas, prior conceptual definitions and measures have been inadequate in a number of ways. The goals of the present study were to develop a conceptual definition and outline the desirable characteristics of a work fatigue measure, briefly examine several prior measures of work fatigue-related constructs, and develop and evaluate a new measure of work fatigue. The Three-Dimensional Work Fatigue Inventory (3D-WFI) provides separate and commensurate assessments of physical, mental, and emotional work fatigue. Results from a pilot study (n = 207) and a broader evaluative study of U.S. wage and salary workers (n = 2,477) suggest that the 3D-WFI is psychometrically sound and evinces a meaningful pattern of relations with variables that comprise the nomological network of work fatigue. As with all new measures, additional research is required to evaluate fully the utility of the 3D-WFI in research on work fatigue. PMID:25602275

  8. In vitro development of secondary follicles from pre-pubertal and adult goats cultured in two-dimensional or three-dimensional systems.

    PubMed

    Silva, G M; Rossetto, R; Chaves, R N; Duarte, A B G; Araújo, V R; Feltrin, C; Bernuci, M P; Anselmo-Franci, J A; Xu, M; Woodruff, T K; Campello, C C; Figueiredo, J R

    2015-08-01

    The aim of this study was to evaluate the influence of two-dimensional (2D) and three-dimensional (3D) alginate culture systems on in vitro development of pre-antral caprine follicles. In addition, the influence of the reproductive age of the ovary donor on the in vitro culture success was investigated. Pre-antral follicles from pre-pubertal or adult goats were isolated and cultured directly on a plastic surface (2D) or encapsulated in an alginate-based matrix (3D). After 18 days, the oocytes underwent in vitro maturation (IVM) and in vitro fertilization (IVF) to produce embryos. The 3D system showed higher rates of follicle survival, lower rates of oocyte extrusion, and a greater number of recovered oocytes for IVM and IVF (P < 0.05). Only pre-antral follicles from adult animals produced MII oocytes and embryos. The estradiol concentrations increased from day 2 to day 12 of culture in all groups tested (P < 0.05). Conversely, progesterone concentrations were lower in 3D-cultured follicles than in 2D-cultured follicles, with differences on days 2 and 6 of culture (P < 0.05). We provide compelling evidence that a 2D or 3D alginate in vitro culture system offers a promising approach to achieving full in vitro development of caprine pre-antral follicles to produce mature oocytes that are capable of fertilization and viable embryos. PMID:24666604

  9. Development of digital image processing based methodology to study, quantify and correlate the microstructure and three dimensional fracture surface morphology of aluminum alloy 7050

    NASA Astrophysics Data System (ADS)

    Dighe, Manish Deepak

    2000-10-01

    7XXX series wrought aluminum alloys are extensively used for structural aerospace applications due to their high strength to weight ratio, excellent corrosion resistance, and high fracture resistance. 7050 is an important alloy of this group, which is widely used for the applications such as aircraft wing skin structures, aircraft landing gear parts, and fuselage frame structure. Therefore, it is of interest to investigate the fracture behavior of 7050 aluminum alloy, which is a typical alloy of 7XXX series. The aim of this research is to quantitatively characterize and model the relationships among processing, microstructure, fracture surface morphology, and fracture toughness of hot-rolled partially recrystallized precipitation hardened 7050 alloy. A new technique is developed which permits simultaneous viewing of the fracture surface and the microstructure just below and above the fracture surface. This technique is then applied to identify, validate and quantify various fracture micro-mechanisms observed on the fracture surface. To get a better insight in to the shape and anisotropy of the recrystallized grains, the three-dimensional structure of the microstructure is reconstructed using serial sectioning. The gathered information is utilized to develop a mathematical model relating the various processing parameters and microstructural attributes to the fracture toughness.

  10. Development of a three-dimensional bioprinter: construction of cell supporting structures using hydrogel and state-of-the-art inkjet technology.

    PubMed

    Nishiyama, Yuichi; Nakamura, Makoto; Henmi, Chizuka; Yamaguchi, Kumiko; Mochizuki, Shuichi; Nakagawa, Hidemoto; Takiura, Koki

    2009-03-01

    We have developed a new technology for producing three-dimensional (3D) biological structures composed of living cells and hydrogel in vitro, via the direct and accurate printing of cells with an inkjet printing system. Various hydrogel structures were constructed with our custom-made inkjet printer, which we termed 3D bioprinter. In the present study, we used an alginate hydrogel that was obtained through the reaction of a sodium alginate solution with a calcium chloride solution. For the construction of the gel structure, sodium alginate solution was ejected from the inkjet nozzle (SEA-Jet, Seiko Epson Corp., Suwa, Japan) and was mixed with a substrate composed of a calcium chloride solution. In our 3D bioprinter, the nozzle head can be moved in three dimensions. Owing to the development of the 3D bioprinter, an innovative fabrication method that enables the gentle and precise fixation of 3D gel structures was established using living cells as a material. To date, several 3D structures that include living cells have been fabricated, including lines, planes, laminated structures, and tubes, and now, experiments to construct various hydrogel structures are being carried out in our laboratory. PMID:19154078