Science.gov

Sample records for differential base stacking

  1. Manifold gasket accommodating differential movement of fuel cell stack

    SciTech Connect

    Kelley, Dana A.; Farooque, Mohammad

    2007-11-13

    A gasket for use in a fuel cell system having at least one externally manifolded fuel cell stack, for sealing the manifold edge and the stack face. In accordance with the present invention, the gasket accommodates differential movement between the stack and manifold by promoting slippage at interfaces between the gasket and the dielectric and between the gasket and the stack face.

  2. Unraveling Base Stacking Driving Forces in DNA.

    PubMed

    Mak, Chi H

    2016-07-01

    Base stacking is a key determinant of nucleic acid structures, but the precise origin of the thermodynamic driving force behind the stacking of nucleobases remains open. The rather mild stacking free energy measured experimentally, roughly a kcal/mol depending on the identity of the bases, is physiologically significant because while base stacking confers stability to the genome in its double helix form, the duplex also has to be unwound in order to be replicated or transcribed. A stacking free energy that is either too high or too low will over- or understabilize the genome, impacting the storage of genetic information and also its retrieval. While the molecular origin of stacking driving force has been attributed to many different sources including dispersion, electrostatics, and solvent hydrogen bonding, here we show via a systematic decomposition of the stacking free energy using large-scale computer simulations that the dominant driving force stabilizing base stacking is nonhydrophobic solvent entropy. Counteracting this is the conformational entropic penalty on the sugar-phosphate backbone against stacking, while solvent hydrogen-bonding, charge-charge interactions, and dispersive forces produce only secondary perturbations. Solvent entropic forces and DNA backbone conformational strains therefore work against each other, leading to a very mild composite stacking free energy in agreement with experiments. PMID:27045853

  3. Guanine base stacking in G-quadruplex nucleic acids.

    PubMed

    Lech, Christopher Jacques; Heddi, Brahim; Phan, Anh Tuân

    2013-02-01

    G-quadruplexes constitute a class of nucleic acid structures defined by stacked guanine tetrads (or G-tetrads) with guanine bases from neighboring tetrads stacking with one another within the G-tetrad core. Individual G-quadruplexes can also stack with one another at their G-tetrad interface leading to higher-order structures as observed in telomeric repeat-containing DNA and RNA. In this study, we investigate how guanine base stacking influences the stability of G-quadruplexes and their stacked higher-order structures. A structural survey of the Protein Data Bank is conducted to characterize experimentally observed guanine base stacking geometries within the core of G-quadruplexes and at the interface between stacked G-quadruplex structures. We couple this survey with a systematic computational examination of stacked G-tetrad energy landscapes using quantum mechanical computations. Energy calculations of stacked G-tetrads reveal large energy differences of up to 12 kcal/mol between experimentally observed geometries at the interface of stacked G-quadruplexes. Energy landscapes are also computed using an AMBER molecular mechanics description of stacking energy and are shown to agree quite well with quantum mechanical calculated landscapes. Molecular dynamics simulations provide a structural explanation for the experimentally observed preference of parallel G-quadruplexes to stack in a 5'-5' manner based on different accessible tetrad stacking modes at the stacking interfaces of 5'-5' and 3'-3' stacked G-quadruplexes. PMID:23268444

  4. Image inpainting based on stacked autoencoders

    NASA Astrophysics Data System (ADS)

    Shcherbakov, O.; Batishcheva, V.

    2014-09-01

    Recently we have proposed the algorithm for the problem of image inpaiting (filling in occluded or damaged parts of images). This algorithm was based on the criterion spectrum entropy and showed promising results despite of using hand-crafted representation of images. In this paper, we present a method for solving image inpaiting task based on learning some image representation. Some results are shown to illustrate quality of image reconstruction.

  5. Investigation of Ruthenium Dissolution in Advanced Membrane Electrode Assemblies for Direct Methanol Based Fuel Cells Stacks

    NASA Technical Reports Server (NTRS)

    Valdez, T. I.; Firdosy, S.; Koel, B. E.; Narayanan, S. R.

    2005-01-01

    This viewgraph presentation gives a detailed review of the Direct Methanol Based Fuel Cell (DMFC) stack and investigates the Ruthenium that was found at the exit of the stack. The topics include: 1) Motivation; 2) Pathways for Cell Degradation; 3) Cell Duration Testing; 4) Duration Testing, MEA Analysis; and 5) Stack Degradation Analysis.

  6. Barrier inhomogeneities at vertically stacked graphene-based heterostructures

    NASA Astrophysics Data System (ADS)

    Lin, Yen-Fu; Li, Wenwu; Li, Song-Lin; Xu, Yong; Aparecido-Ferreira, Alex; Komatsu, Katsuyoshi; Sun, Huabin; Nakaharai, Shu; Tsukagoshi, Kazuhito

    2013-12-01

    The integration of graphene and other atomically flat, two-dimensional materials has attracted much interest and been materialized very recently. An in-depth understanding of transport mechanisms in such heterostructures is essential. In this study, vertically stacked graphene-based heterostructure transistors were manufactured to elucidate the mechanism of electron injection at the interface. The temperature dependence of the electrical characteristics was investigated from 300 to 90 K. In a careful analysis of current-voltage characteristics, an unusual decrease in the effective Schottky barrier height and increase in the ideality factor were observed with decreasing temperature. A model of thermionic emission with a Gaussian distribution of barriers was able to precisely interpret the conduction mechanism. Furthermore, mapping of the effective Schottky barrier height is unmasked as a function of temperature and gate voltage. The results offer significant insight for the development of future layer-integration technology based on graphene-based heterostructures.The integration of graphene and other atomically flat, two-dimensional materials has attracted much interest and been materialized very recently. An in-depth understanding of transport mechanisms in such heterostructures is essential. In this study, vertically stacked graphene-based heterostructure transistors were manufactured to elucidate the mechanism of electron injection at the interface. The temperature dependence of the electrical characteristics was investigated from 300 to 90 K. In a careful analysis of current-voltage characteristics, an unusual decrease in the effective Schottky barrier height and increase in the ideality factor were observed with decreasing temperature. A model of thermionic emission with a Gaussian distribution of barriers was able to precisely interpret the conduction mechanism. Furthermore, mapping of the effective Schottky barrier height is unmasked as a function of

  7. Dynamic fuel cell stack model for real-time simulation based on system identification

    NASA Astrophysics Data System (ADS)

    Meiler, M.; Schmid, O.; Schudy, M.; Hofer, E. P.

    The authors have been developing an empirical mathematical model to predict the dynamic behaviour of a polymer electrolyte membrane fuel cell (PEMFC) stack. Today there is a great number of models, describing steady-state behaviour of fuel cells by estimating the equilibrium voltage for a certain set of operating parameters, but models capable of predicting the transient process between two steady-state points are rare. However, in automotive applications round about 80% of operating situations are dynamic. To improve the reliability of fuel cell systems by model-based control for real-time simulation dynamic fuel cell stack model is needed. Physical motivated models, described by differential equations, usually are complex and need a lot of computing time. To meet the real-time capability the focus is set on empirical models. Fuel cells are highly nonlinear systems, so often used auto-regressive (AR), output-error (OE) or Box-Jenkins (BJ) models do not accomplish satisfying accuracy. Best results are achieved by splitting the behaviour into a nonlinear static and a linear dynamic subsystem, a so-called Uryson-Model. For system identification and model validation load steps with different amplitudes are applied to the fuel cell stack at various operation points and the voltage response is recorded. The presented model is implemented in MATLAB environment and has a computing time of less than 1 ms per step on a standard desktop computer with a 2.8 MHz CPU and 504 MB RAM. Lab tests are carried out at DaimlerChrysler R&D Centre with DaimlerChrysler PEMFC hardware and a good agreement is found between model simulations and lab tests.

  8. Diffraction based overlay metrology: accuracy and performance on front end stack

    NASA Astrophysics Data System (ADS)

    Leray, Philippe; Cheng, Shaunee; Kandel, Daniel; Adel, Michael; Marchelli, Anat; Vakshtein, Irina; Vasconi, Mauro; Salski, Bartlomiej

    2008-03-01

    The overlay metrology budget is typically 1/10 of the overlay control budget resulting in overlay metrology total measurement uncertainty requirements of 0.57 nm for the most challenging use cases of the 32nm technology generation. Theoretical considerations show that overlay technology based on differential signal scatterometry (SCOL TM) has inherent advantages, which will allow it to achieve the 32nm technology generation requirements and go beyond it. In this work we present results of an experimental and theoretical study of SCOL. We present experimental results, comparing this technology with the standard imaging overlay metrology. In particular, we present performance results, such as precision and tool induced shift, for different target designs. The response to a large range of induced misalignment is also shown. SCOL performance on these targets for a real stack is reported. We also show results of simulations of the expected accuracy and performance associated with a variety of scatterometry overlay target designs. The simulations were carried out on several stacks including FEOL and BEOL materials. The inherent limitations and possible improvements of the SCOL technology are discussed. We show that with the appropriate target design and algorithms, scatterometry overlay achieves the accuracy required for future technology generations.

  9. Free energy analysis and mechanism of base pair stacking in nicked DNA.

    PubMed

    Häse, Florian; Zacharias, Martin

    2016-09-01

    The equilibrium of stacked and unstacked base pairs is of central importance for all nucleic acid structure formation processes. The stacking equilibrium is influenced by intramolecular interactions between nucleosides but also by interactions with the solvent. Realistic simulations on nucleic acid structure formation and flexibility require an accurate description of the stacking geometry and stability and its sequence dependence. Free energy simulations have been conducted on a series of double stranded DNA molecules with a central strand break (nick) in one strand. The change in free energy upon unstacking was calculated for all ten possible base pair steps using umbrella sampling along a center-of-mass separation coordinate and including a comparison of different water models. Comparison to experimental studies indicates qualitative agreement of the stability order but a general overestimation of base pair stacking interactions in the simulations. A significant dependence of calculated nucleobase stacking free energies on the employed water model was observed with the tendency of stacking free energies being more accurately reproduced by more complex water models. The simulation studies also suggest a mechanism of stacking/unstacking that involves significant motions perpendicular to the reaction coordinate and indicate that the equilibrium nicked base pair step may slightly differ from regular B-DNA geometry in a sequence-dependent manner. PMID:27407106

  10. Free energy analysis and mechanism of base pair stacking in nicked DNA

    PubMed Central

    Häse, Florian; Zacharias, Martin

    2016-01-01

    The equilibrium of stacked and unstacked base pairs is of central importance for all nucleic acid structure formation processes. The stacking equilibrium is influenced by intramolecular interactions between nucleosides but also by interactions with the solvent. Realistic simulations on nucleic acid structure formation and flexibility require an accurate description of the stacking geometry and stability and its sequence dependence. Free energy simulations have been conducted on a series of double stranded DNA molecules with a central strand break (nick) in one strand. The change in free energy upon unstacking was calculated for all ten possible base pair steps using umbrella sampling along a center-of-mass separation coordinate and including a comparison of different water models. Comparison to experimental studies indicates qualitative agreement of the stability order but a general overestimation of base pair stacking interactions in the simulations. A significant dependence of calculated nucleobase stacking free energies on the employed water model was observed with the tendency of stacking free energies being more accurately reproduced by more complex water models. The simulation studies also suggest a mechanism of stacking/unstacking that involves significant motions perpendicular to the reaction coordinate and indicate that the equilibrium nicked base pair step may slightly differ from regular B-DNA geometry in a sequence-dependent manner. PMID:27407106

  11. Sequence-Dependent Elasticity and Electrostatics of Single-Stranded DNA: Signatures of Base-Stacking

    PubMed Central

    McIntosh, Dustin B.; Duggan, Gina; Gouil, Quentin; Saleh, Omar A.

    2014-01-01

    Base-stacking is a key factor in the energetics that determines nucleic acid structure. We measure the tensile response of single-stranded DNA as a function of sequence and monovalent salt concentration to examine the effects of base-stacking on the mechanical and thermodynamic properties of single-stranded DNA. By comparing the elastic response of highly stacked poly(dA) and that of a polypyrimidine sequence with minimal stacking, we find that base-stacking in poly(dA) significantly enhances the polymer’s rigidity. The unstacking transition of poly(dA) at high force reveals that the intrinsic electrostatic tension on the molecule varies significantly more weakly on salt concentration than mean-field predictions. Further, we provide a model-independent estimate of the free energy difference between stacked poly(dA) and unstacked polypyrimidine, finding it to be ∼−0.25 kBT/base and nearly constant over three orders of magnitude in salt concentration. PMID:24507606

  12. Pre-stack-texture-based reservoir characteristics and seismic facies analysis

    NASA Astrophysics Data System (ADS)

    Song, Cheng-Yun; Liu, Zhi-Ning; Cai, Han-Peng; Qian, Feng; Hu, Guang-Min

    2016-03-01

    Seismic texture attributes are closely related to seismic facies and reservoir characteristics and are thus widely used in seismic data interpretation. However, information is mislaid in the stacking process when traditional texture attributes are extracted from post-stack data, which is detrimental to complex reservoir description. In this study, pre-stack texture attributes are introduced, these attributes can not only capable of precisely depicting the lateral continuity of waveforms between different reflection points but also reflect amplitude versus offset, anisotropy, and heterogeneity in the medium. Due to its strong ability to represent stratigraphics, a pre-stack-data-based seismic facies analysis method is proposed using the self-organizing map algorithm. This method is tested on wide azimuth seismic data from China, and the advantages of pre-stack texture attributes in the description of stratum lateral changes are verified, in addition to the method's ability to reveal anisotropy and heterogeneity characteristics. The pre-stack texture classification results effectively distinguish different seismic reflection patterns, thereby providing reliable evidence for use in seismic facies analysis.

  13. Determination of Base Binding Strength and Base Stacking Interaction of DNA Duplex Using Atomic Force Microscope

    PubMed Central

    Zhang, Tian-biao; Zhang, Chang-lin; Dong, Zai-li; Guan, Yi-fu

    2015-01-01

    As one of the most crucial properties of DNA, the structural stability and the mechanical strength are attracting a great attention. Here, we take advantage of high force resolution and high special resolution of Atom Force Microscope and investigate the mechanical force of DNA duplexes. To evaluate the base pair hydrogen bond strength and base stacking force in DNA strands, we designed two modes (unzipping and stretching) for the measurement rupture forces. Employing k-means clustering algorithm, the ruptured force are clustered and the mean values are estimated. We assessed the influence of experimental parameters and performed the force evaluation for DNA duplexes of pure dG/dC and dA/dT base pairs. The base binding strength of single dG/dC and single dA/dT were estimated to be 20.0 ± 0.2 pN and 14.0 ± 0.3 pN, respectively, and the base stacking interaction was estimated to be 2.0 ± 0.1 pN. Our results provide valuable information about the quantitative evaluation of the mechanical properties of the DNA duplexes. PMID:25772017

  14. A stacked sequential learning method for investigator name recognition from web-based medical articles

    NASA Astrophysics Data System (ADS)

    Zhang, Xiaoli; Zou, Jie; Le, Daniel X.; Thoma, George

    2010-01-01

    "Investigator Names" is a newly required field in MEDLINE citations. It consists of personal names listed as members of corporate organizations in an article. Extracting investigator names automatically is necessary because of the increasing volume of articles reporting collaborative biomedical research in which a large number of investigators participate. In this paper, we present an SVM-based stacked sequential learning method in a novel application - recognizing named entities such as the first and last names of investigators from online medical journal articles. Stacked sequential learning is a meta-learning algorithm which can boost any base learner. It exploits contextual information by adding the predicted labels of the surrounding tokens as features. We apply this method to tag words in text paragraphs containing investigator names, and demonstrate that stacked sequential learning improves the performance of a nonsequential base learner such as an SVM classifier.

  15. Nature and magnitude of aromatic base stacking in DNA and RNA: Quantum chemistry, molecular mechanics, and experiment.

    PubMed

    Sponer, Jiří; Sponer, Judit E; Mládek, Arnošt; Jurečka, Petr; Banáš, Pavel; Otyepka, Michal

    2013-12-01

    Base stacking is a major interaction shaping up and stabilizing nucleic acids. During the last decades, base stacking has been extensively studied by experimental and theoretical methods. Advanced quantum-chemical calculations clarified that base stacking is a common interaction, which in the first approximation can be described as combination of the three most basic contributions to molecular interactions, namely, electrostatic interaction, London dispersion attraction and short-range repulsion. There is not any specific π-π energy term associated with the delocalized π electrons of the aromatic rings that cannot be described by the mentioned contributions. The base stacking can be rather reasonably approximated by simple molecular simulation methods based on well-calibrated common force fields although the force fields do not include nonadditivity of stacking, anisotropy of dispersion interactions, and some other effects. However, description of stacking association in condensed phase and understanding of the stacking role in biomolecules remain a difficult problem, as the net base stacking forces always act in a complex and context-specific environment. Moreover, the stacking forces are balanced with many other energy contributions. Differences in definition of stacking in experimental and theoretical studies are explained. PMID:23784745

  16. Electron attachment to the cytosine-centered DNA single strands: does base stacking matter?

    PubMed

    Gu, Jiande; Wang, Jing; Leszczynski, Jerzy

    2012-02-01

    Electron attachment to the trimer of nucleotide, dGpdCpdG, has been investigated by a quantum mechanical approach at a reliable level of theory. The study of the electron attached dGpdCpdG species demonstrates that cytosine contained DNA single strands have a strong tendency to capture low-energy electrons and to form electronically stable cytosine-centered radical anions. The comparative study of the model molecules pdCpdG and dGpdCp reveals that base stacking has little contribution to the adiabatic electron affinity (AEA) of cytosine in DNA single strands. Additionally, the base-base stacking does not affect the vertical detachment energy (VDE) of the cytosine-centered radicals. Intrastrand H-bonding is found to be critical in increasing the values of the AEA and VDE. However, base-base stacking is revealed to be important in enlarging the vertical electron affinity (VEA) of cytosine. The electron attachment to the cytosine moiety intensifies the intrastrand H-bonding between the neighboring G and C bases. This process disrupts the base-base stacking interaction in the radical anion of dGpdCpdG. PMID:22225006

  17. Stacked Deck: An Effective, School-Based Program for the Prevention of Problem Gambling

    ERIC Educational Resources Information Center

    Williams, Robert J.; Wood, Robert T.; Currie, Shawn R.

    2010-01-01

    School-based prevention programs are an important component of problem gambling prevention, but empirically effective programs are lacking. Stacked Deck is a set of 5-6 interactive lessons that teach about the history of gambling; the true odds and "house edge"; gambling fallacies; signs, risk factors, and causes of problem gambling; and skills…

  18. Prognostics of Proton Exchange Membrane Fuel Cells stack using an ensemble of constraints based connectionist networks

    NASA Astrophysics Data System (ADS)

    Javed, Kamran; Gouriveau, Rafael; Zerhouni, Noureddine; Hissel, Daniel

    2016-08-01

    Proton Exchange Membrane Fuel Cell (PEMFC) is considered the most versatile among available fuel cell technologies, which qualify for diverse applications. However, the large-scale industrial deployment of PEMFCs is limited due to their short life span and high exploitation costs. Therefore, ensuring fuel cell service for a long duration is of vital importance, which has led to Prognostics and Health Management of fuel cells. More precisely, prognostics of PEMFC is major area of focus nowadays, which aims at identifying degradation of PEMFC stack at early stages and estimating its Remaining Useful Life (RUL) for life cycle management. This paper presents a data-driven approach for prognostics of PEMFC stack using an ensemble of constraint based Summation Wavelet- Extreme Learning Machine (SW-ELM) models. This development aim at improving the robustness and applicability of prognostics of PEMFC for an online application, with limited learning data. The proposed approach is applied to real data from two different PEMFC stacks and compared with ensembles of well known connectionist algorithms. The results comparison on long-term prognostics of both PEMFC stacks validates our proposition.

  19. CSTACK: A Web-Based Stacking Analysis Tool for Deep/Wide Chandra Surveys

    NASA Astrophysics Data System (ADS)

    Miyaji, Takamitsu; Griffiths, R. E.; C-COSMOS Team

    2008-03-01

    Stacking analysis is a strong tool to probe the average X-ray properties of X-ray faint objects as a class, each of which are fainter than the detection limit as an individual source. This is especially the case for deep/wide surveys with Chandra, with its superb spatial resolution and the existence of survey data on the fields with extensive multiwavelength coverages. We present an easy-to use web-based tool (http://saturn.phys.cmu.edu/cstack), which enables users to perform a stacking analysis on a number of Chandra survey fields.Currently supported are C-COSMOS, Extended Chandra Deep Field South (proprietary access, password protected), Chandra Deep Fields South, and North (Guest access user=password=guest). For an input list of positions (e.g. galaxies selected from an optical catalog), the WWW tool returns stacked Chandra images in soft and hard bands and statistical analysis results including bootstrap histograms. We present running examples on the C-COSMOS data. The next version will also include the use of off-axis dependent aperture size, automatic exclusions of resolved sources, and histograms of stacks on random positions.

  20. The influence of arene-ring size on stacking interaction with canonical base pairs

    NASA Astrophysics Data System (ADS)

    Formánek, Martin; Burda, Jaroslav V.

    2014-04-01

    Stacking interactions between aromatic molecules (benzene, p-cymene, biphenyl, and di- and tetra-hydrogen anthracene) and G.C and A.T canonical Watson-Crick (WC) base pairs are explored. Two functionals with dispersion corrections: ω-B97XD and B3LYP-D3 are used. For a comparison also the MP2 and B3LYP-D3/PCM methods were used for the most stable p-cymene…WC geometries. It was found that the stacking interaction increases with the size of π-conjugation system. Its extent is in agreement with experimental finding on anticancer activity of Ru(II) piano-stool complexes where intercalation of these aromatic molecules should play an important role. The explored structures are considered as ternary system so that decomposition of the interaction energy to pairwise and non-additivity contributions is also examined.

  1. Development of an automatic subsea blowout preventer stack control system using PLC based SCADA.

    PubMed

    Cai, Baoping; Liu, Yonghong; Liu, Zengkai; Wang, Fei; Tian, Xiaojie; Zhang, Yanzhen

    2012-01-01

    An extremely reliable remote control system for subsea blowout preventer stack is developed based on the off-the-shelf triple modular redundancy system. To meet a high reliability requirement, various redundancy techniques such as controller redundancy, bus redundancy and network redundancy are used to design the system hardware architecture. The control logic, human-machine interface graphical design and redundant databases are developed by using the off-the-shelf software. A series of experiments were performed in laboratory to test the subsea blowout preventer stack control system. The results showed that the tested subsea blowout preventer functions could be executed successfully. For the faults of programmable logic controllers, discrete input groups and analog input groups, the control system could give correct alarms in the human-machine interface. PMID:21889767

  2. Complete optical stack modeling for CMOS-based medical x-ray detectors

    NASA Astrophysics Data System (ADS)

    Zyazin, Alexander S.; Peters, Inge M.

    2015-03-01

    We have developed a simulation tool for modeling the performance of CMOS-based medical x-ray detectors, based on the Monte Carlo toolkit GEANT4. Following the Fujita-Lubberts-Swank approach recently reported by Star-Lack et al., we calculate modulation transfer function MTF(f), noise power spectrum NPS(f) and detective quantum efficiency DQE(f) curves. The complete optical stack is modeled, including scintillator, fiber optic plate (FOP), optical adhesive and CMOS image sensor. For critical parts of the stack, detailed models have been developed, taking into account their respective microstructure. This includes two different scintillator types: Gd2O2S:Tb (GOS) and CsI:Tl. The granular structure of the former is modeled using anisotropic Mie scattering. The columnar structure of the latter is introduced into calculations directly, using the parameterization capabilities of GEANT4. The underlying homogeneous CsI layer is also incorporated into the model as well as the optional reflective layer on top of the scintillator screen or the protective polymer top coat. The FOP is modeled as an array of hexagonal bundles of fibers. The simulated CMOS stack consists of layers of Si3N4 and SiO2 on top of a silicon pixel array. The model is validated against measurements of various test detector structures, using different x-ray spectra (RQA5 and RQA-M2), showing good match between calculated and measured MTF(f) and DQE(f) curves.

  3. Differential Geometry Based Multiscale Models

    PubMed Central

    Wei, Guo-Wei

    2010-01-01

    Large chemical and biological systems such as fuel cells, ion channels, molecular motors, and viruses are of great importance to the scientific community and public health. Typically, these complex systems in conjunction with their aquatic environment pose a fabulous challenge to theoretical description, simulation, and prediction. In this work, we propose a differential geometry based multiscale paradigm to model complex macromolecular systems, and to put macroscopic and microscopic descriptions on an equal footing. In our approach, the differential geometry theory of surfaces and geometric measure theory are employed as a natural means to couple the macroscopic continuum mechanical description of the aquatic environment with the microscopic discrete atom-istic description of the macromolecule. Multiscale free energy functionals, or multiscale action functionals are constructed as a unified framework to derive the governing equations for the dynamics of different scales and different descriptions. Two types of aqueous macromolecular complexes, ones that are near equilibrium and others that are far from equilibrium, are considered in our formulations. We show that generalized Navier–Stokes equations for the fluid dynamics, generalized Poisson equations or generalized Poisson–Boltzmann equations for electrostatic interactions, and Newton's equation for the molecular dynamics can be derived by the least action principle. These equations are coupled through the continuum-discrete interface whose dynamics is governed by potential driven geometric flows. Comparison is given to classical descriptions of the fluid and electrostatic interactions without geometric flow based micro-macro interfaces. The detailed balance of forces is emphasized in the present work. We further extend the proposed multiscale paradigm to micro-macro analysis of electrohydrodynamics, electrophoresis, fuel cells, and ion channels. We derive generalized Poisson–Nernst–Planck equations that

  4. Detecting Theft of Java Applications via a Static Birthmark Based on Weighted Stack Patterns

    NASA Astrophysics Data System (ADS)

    Lim, Hyun-Il; Park, Heewan; Choi, Seokwoo; Han, Taisook

    A software birthmark means the inherent characteristics of a program that can be used to identify the program. A comparison of such birthmarks facilitates the detection of software theft. In this paper, we propose a static Java birthmark based on a set of stack patterns, which reflect the characteristic of Java applications. A stack pattern denotes a sequence of bytecodes that share their operands through the operand stack. A weight scheme is used to balance the influence of each bytecode in a comparison of the birthmarks. We evaluate the proposed birthmark with respect to two properties required for a birthmark: credibility and resilience. The empirical results show that the proposed birthmark is highly credible and resilient to program transformation. We also compare the proposed birthmark with existing birthmarks, such as that of Tamada et al. and the k-gram birthmark. The experimental results show that the proposed birthmark is more stable than the birthmarks in terms of resilience to program transformation. Thus, the proposed birthmark can provide more reliable evidence of software theft when the software is modified by someone other than author.

  5. A high efficiency label-free photonic biosensor based on vertically stacked ring resonators

    NASA Astrophysics Data System (ADS)

    Campanella, C. E.; Campanella, C. M.; De Leonardis, F.; Passaro, V. M. N.

    2014-09-01

    In this paper we propose an optical biosensor based on two vertically stacked Silicon on Insulator (SOI) micro-ring resonators interacting with a microfluidic ring channel. This device behaves as a resonant optical coupler and it is very sensitive to the variation of the coupling coefficient between the two vertically stacked ring resonators. A ring microfluidic channel is proposed in the coupling region between the two vertically stacked ring resonators. The inner walls of the channel are funzionalized in order to the trap a specific biological species. Assuming a biotin-streptavidin system, the straptividin trapping gives rise to a change of the biological thickness of about 3 nm. This thickness increase of the deposited layer leads to a consequent change in the coupling strength between the two rings. These theoretical predictions have been validated by using both 3D Finite-Difference Time-Domain (FDTD) and 3D full-vectorial Finite Element Method (FEM) approaches. Moreover, by appropriately choosing the design parameters of the micro-resonant structure, we evaluate a sensitivity of the spectral response to the streptavidin adlayer variation of about 20% nm-1 for TE polarization and 34% nm-1 for TM polarization, which represents an important achievement to obtain selective SOI bio-sensors with ultra-high resolution.

  6. Excitation migration along oligophenylenevinylene-based chiral stacks: delocalization effects on transport dynamics.

    PubMed

    Beljonne, D; Hennebicq, E; Daniel, C; Herz, L M; Silva, C; Scholes, G D; Hoeben, F J M; Jonkheijm, P; Schenning, A P H J; Meskers, S C J; Phillips, R T; Friend, R H; Meijer, E W

    2005-06-01

    Atomistic models based on quantum-chemical calculations are combined with time-resolved spectroscopic investigations to explore the migration of electronic excitations along oligophenylenevinylene-based chiral stacks. It is found that the usual Pauli master equation (PME) approach relying on uncoherent transport between individual chromophores underestimates the excitation diffusion dynamics, monitored here by the time decay of the transient polarization anisotropy. A better agreement to experiment is achieved when accounting for excitation delocalization among acceptor molecules, as implemented in a modified version of the PME model. The same models are applied to study light harvesting and trapping in guest-host systems built from oligomers of different lengths. PMID:16852286

  7. Q estimation using modified S transform based on pre-stack gathers and its applications on carbonate reservoir

    NASA Astrophysics Data System (ADS)

    Zandong Sun, Sam; Sun, Xuekai; Wang, Yonggang; Xie, Huiwen

    2015-10-01

    Pre-stack seismic data is acknowledged to be more favorable in estimating Q values since it carries much more valuable information in traveltime and amplitude than post-stack data. However, the spectrum of reflectors can be strongly altered by nearby reflector or side lobes of the wavelet, which thereby degrades the accuracy of Q estimation based on the pre-stack spectral ratio method. To solve this problem, we propose a method based on the modified S-transform (MST) for estimating Q values from pre-stack gathers, in which Q values can be obtained with regression analysis based on the relationship between spectral ratio slope and the square of offset. Through tests on a numerical model, we first prove advantages of this pre-stack spectral ratio method compared to the traditional post-stack method. Besides, it is also shown that application of MST would lead to a much more focused intercept, which is the kernel for the pre-stack method. Therefore, the accuracy of Q estimation using MST is further improved when compared with that of conventional S-transform (ST). Based on this Q estimation method, we apply relevant processing methods (e.g. inverse Q filtering and dynamic Q migration) in practice, in order to improve imaging resolution and gathering quality with better amplitude and phase relationships. Applications on a carbonate reservoir witness remarkable enhancements of the imaging result, in which features of faults and deep strata are more clearly revealed. Moreover, pre-stack common-reflection-point (CRP) gathers obtained by dynamic Q migration well compensate the amplitude loss and correct the phase. Its ultimate pre-stack elastic inversion result better characterizes the geologic rules of complex carbonate reservoir predominated by secondary-storage-space.

  8. Efficiency Enhancement of InGaN-Based Solar Cells via Stacking Layers of Light-Harvesting Nanospheres

    NASA Astrophysics Data System (ADS)

    Al-Amri, Amal M.; Fu, Po-Han; Lai, Kun-Yu; Wang, Hsin-Ping; Li, Lain-Jong; He-Hau, Jr.

    2016-06-01

    An effective light-harvesting scheme for InGaN-based multiple quantum well solar cells is demonstrated using stacking layers of polystyrene nanospheres. Light-harvesting efficiencies on the solar cells covered with varied stacks of nanospheres are evaluated through numerical and experimental methods. The numerical simulation reveals that nanospheres with 3 stacking layers exhibit the most improved optical absorption and haze ratio as compared to those obtained by monolayer nanospheres. The experimental demonstration, agreeing with the theoretical analyses, shows that the application of 3-layer nanospheres improves the conversion efficiency of the solar cell by ~31%.

  9. Efficiency Enhancement of InGaN-Based Solar Cells via Stacking Layers of Light-Harvesting Nanospheres

    PubMed Central

    Al-Amri, Amal M.; Fu, Po-Han; Lai, Kun-Yu; Wang, Hsin-Ping; Li, Lain-Jong; He, Jr-Hau

    2016-01-01

    An effective light-harvesting scheme for InGaN-based multiple quantum well solar cells is demonstrated using stacking layers of polystyrene nanospheres. Light-harvesting efficiencies on the solar cells covered with varied stacks of nanospheres are evaluated through numerical and experimental methods. The numerical simulation reveals that nanospheres with 3 stacking layers exhibit the most improved optical absorption and haze ratio as compared to those obtained by monolayer nanospheres. The experimental demonstration, agreeing with the theoretical analyses, shows that the application of 3-layer nanospheres improves the conversion efficiency of the solar cell by ~31%. PMID:27339612

  10. Efficiency Enhancement of InGaN-Based Solar Cells via Stacking Layers of Light-Harvesting Nanospheres.

    PubMed

    Al-Amri, Amal M; Fu, Po-Han; Lai, Kun-Yu; Wang, Hsin-Ping; Li, Lain-Jong; He, Jr-Hau

    2016-01-01

    An effective light-harvesting scheme for InGaN-based multiple quantum well solar cells is demonstrated using stacking layers of polystyrene nanospheres. Light-harvesting efficiencies on the solar cells covered with varied stacks of nanospheres are evaluated through numerical and experimental methods. The numerical simulation reveals that nanospheres with 3 stacking layers exhibit the most improved optical absorption and haze ratio as compared to those obtained by monolayer nanospheres. The experimental demonstration, agreeing with the theoretical analyses, shows that the application of 3-layer nanospheres improves the conversion efficiency of the solar cell by ~31%. PMID:27339612

  11. Extracting Drug-Drug Interaction from the Biomedical Literature Using a Stacked Generalization-Based Approach

    PubMed Central

    He, Linna; Yang, Zhihao; Zhao, Zhehuan; Lin, Hongfei; Li, Yanpeng

    2013-01-01

    Drug-drug interaction (DDI) detection is particularly important for patient safety. However, the amount of biomedical literature regarding drug interactions is increasing rapidly. Therefore, there is a need to develop an effective approach for the automatic extraction of DDI information from the biomedical literature. In this paper, we present a Stacked Generalization-based approach for automatic DDI extraction. The approach combines the feature-based, graph and tree kernels and, therefore, reduces the risk of missing important features. In addition, it introduces some domain knowledge based features (the keyword, semantic type, and DrugBank features) into the feature-based kernel, which contribute to the performance improvement. More specifically, the approach applies Stacked generalization to automatically learn the weights from the training data and assign them to three individual kernels to achieve a much better performance than each individual kernel. The experimental results show that our approach can achieve a better performance of 69.24% in F-score compared with other systems in the DDI Extraction 2011 challenge task. PMID:23785452

  12. Creep Mechanisms of a Ni-Co-Based-Wrought Superalloy with Low Stacking Fault Energy

    NASA Astrophysics Data System (ADS)

    Tian, Chenggang; Xu, Ling; Cui, Chuanyong; Sun, Xiaofeng

    2015-10-01

    In order to study the influences of stress and temperature on the creep deformation mechanisms of a newly developed Ni-Co-based superalloy with low stacking fault energy, creep experiments were carried out under a stress range of 345 to 840 MPa and a temperature range of 923 K to 1088 K (650 °C to 815 °C). The mechanisms operated under the various creep conditions were identified and the reasons for their transformation were well discussed. A deformation mechanism map under different creep conditions was summarized, which provides a qualitative representation of the operative creep mechanisms as a function of stress and temperature.

  13. Analytical modeling and optimization of DEAP-based multilayer stack-transducers

    NASA Astrophysics Data System (ADS)

    Hoffstadt, Thorben; Maas, Jürgen

    2015-09-01

    Transducers based on dielectric electroactive polymers (DEAP) use electrostatic pressure to convert electrical into mechanical energy or vice versa. To scale up the actuation or the energy gain, multilayer transducers like DEAP stack transducers are appropriate. Within this contribution, a model of such a stack transducer is derived and experimentally validated. The model is based on a multi-domain approach to describe the mechanical dynamics and the electrical behavior of the DEAP. Since these two domains influence each other they are coupled afterwards by a novel approach using interchanging power flows. To parametrize this model, tensile and compression tests for different polymer materials were performed under static and transient considerations. The results of these experiments show that the parameters obtained from the tensile test sufficiently describe the compression mode and can therefore be used for the model. Based on this transducer model the overall energy and the different parts of the multi-domain are analytically determined for arbitrary operating points. These expressions for the energies are finally used to optimize well-defined coupling coefficients, by which a maximum part of the electrical input energy is converted to mechanical energy, especially mechanical work.

  14. Influence of the π–π interaction on the hydrogen bonding capacity of stacked DNA/RNA bases

    PubMed Central

    Mignon, Pierre; Loverix, Stefan; Steyaert, Jan; Geerlings, Paul

    2005-01-01

    The interplay between aromatic stacking and hydrogen bonding in nucleobases has been investigated via high-level quantum chemical calculations. The experimentally observed stacking arrangement between consecutive bases in DNA and RNA/DNA double helices is shown to enhance their hydrogen bonding ability as opposed to gas phase optimized complexes. This phenomenon results from more repulsive electrostatic interactions as is demonstrated in a model system of cytosine stacked offset-parallel with substituted benzenes. Therefore, the H-bonding capacity of the N3 and O2 atoms of cytosine increases linearly with the electrostatic repulsion between the stacked rings. The local hardness, a density functional theory-based reactivity descriptor, appears to be a key index associated with the molecular electrostatic potential (MEP) minima around H-bond accepting atoms, and is inversely proportional to the electrostatic interaction between stacked molecules. Finally, the MEP minima on surfaces around the bases in experimental structures of DNA and RNA–DNA double helices show that their hydrogen bonding capacity increases when taking more neighboring (intra-strand) stacking partners into account. PMID:15788750

  15. The effect of water environment on the hopping conductivity of an aperiodic nucleotide base stack

    NASA Astrophysics Data System (ADS)

    Ye, Y.-J.; Chen, R. S.; Chen, F.; Sun, J.; Ladik, J.

    2001-07-01

    We have used the matrix block negative factor counting method to calculate the density of states of an aperiodic single stack of DNA (a part of a human oncogene), consisting of 100 nucleotide bases in the DNA B conformation. The nearest water molecules were taken into account in the calculation. The work refers to the valence bands region of the stacks. Consequently the inverse iteration method was used to determine the Anderson localization of the physically interesting wave functions. The hopping frequencies between the units were determined from these. They have been used as input in a random walk theory. According to the results obtained, the real part and the absolute value of the complex hopping conductivity gets saturated at the frequency of 10 12 s -1. Its value lies at ˜10 -4 Ω -1 cm -1, which is by two orders of magnitude larger than the one obtained previously in the absence of water (˜10 -6 Ω -1 cm -1). Different reasons for this rather large effect of water are discussed (e.g. basis set improvement by bases set superposition, the effect of the water dipoles).

  16. Vibrotactile display for mobile applications based on dielectric elastomer stack actuators

    NASA Astrophysics Data System (ADS)

    Matysek, Marc; Lotz, Peter; Flittner, Klaus; Schlaak, Helmut F.

    2010-04-01

    Dielectric elastomer stack actuators (DESA) offer the possibility to build actuator arrays at very high density. The driving voltage can be defined by the film thickness, ranging from 80 μm down to 5 μm and driving field strength of 30 V/μm. In this paper we present the development of a vibrotactile display based on multilayer technology. The display is used to present several operating conditions of a machine in form of haptic information to a human finger. As an example the design of a mp3-player interface is introduced. To build up an intuitive and user friendly interface several aspects of human haptic perception have to be considered. Using the results of preliminary user tests the interface is designed and an appropriate actuator layout is derived. Controlling these actuators is important because there are many possibilities to present different information, e.g. by varying the driving parameters. A built demonstrator is used to verify the concept: a high recognition rate of more than 90% validates the concept. A characterization of mechanical and electrical parameters proofs the suitability of dielectric elastomer stack actuators for the use in mobile applications.

  17. STAR3D: a stack-based RNA 3D structural alignment tool

    PubMed Central

    Ge, Ping; Zhang, Shaojie

    2015-01-01

    The various roles of versatile non-coding RNAs typically require the attainment of complex high-order structures. Therefore, comparing the 3D structures of RNA molecules can yield in-depth understanding of their functional conservation and evolutionary history. Recently, many powerful tools have been developed to align RNA 3D structures. Although some methods rely on both backbone conformations and base pairing interactions, none of them consider the entire hierarchical formation of the RNA secondary structure. One of the major issues is that directly applying the algorithms of matching 2D structures to the 3D coordinates is particularly time-consuming. In this article, we propose a novel RNA 3D structural alignment tool, STAR3D, to take into full account the 2D relations between stacks without the complicated comparison of secondary structures. First, the 3D conserved stacks in the inputs are identified and then combined into a tree-like consensus. Afterward, the loop regions are compared one-to-one in accordance with their relative positions in the consensus tree. The experimental results show that the prediction of STAR3D is more accurate for both non-homologous and homologous RNAs than other state-of-the-art tools with shorter running time. PMID:26184875

  18. STAR3D: a stack-based RNA 3D structural alignment tool.

    PubMed

    Ge, Ping; Zhang, Shaojie

    2015-11-16

    The various roles of versatile non-coding RNAs typically require the attainment of complex high-order structures. Therefore, comparing the 3D structures of RNA molecules can yield in-depth understanding of their functional conservation and evolutionary history. Recently, many powerful tools have been developed to align RNA 3D structures. Although some methods rely on both backbone conformations and base pairing interactions, none of them consider the entire hierarchical formation of the RNA secondary structure. One of the major issues is that directly applying the algorithms of matching 2D structures to the 3D coordinates is particularly time-consuming. In this article, we propose a novel RNA 3D structural alignment tool, STAR3D, to take into full account the 2D relations between stacks without the complicated comparison of secondary structures. First, the 3D conserved stacks in the inputs are identified and then combined into a tree-like consensus. Afterward, the loop regions are compared one-to-one in accordance with their relative positions in the consensus tree. The experimental results show that the prediction of STAR3D is more accurate for both non-homologous and homologous RNAs than other state-of-the-art tools with shorter running time. PMID:26184875

  19. Hybrid simulation approach incorporating microscopic interaction along with rigid body degrees of freedom for stacking between base pairs.

    PubMed

    Mondal, Manas; Halder, Sukanya; Chakrabarti, Jaydeb; Bhattacharyya, Dhananjay

    2016-04-01

    Stacking interaction between the aromatic heterocyclic bases plays an important role in the double helical structures of nucleic acids. Considering the base as rigid body, there are total of 18 degrees of freedom of a dinucleotide step. Some of these parameters show sequence preferences, indicating that the detailed atomic interactions are important in the stacking. Large variants of non-canonical base pairs have been seen in the crystallographic structures of RNA. However, their stacking preferences are not thoroughly deciphered yet from experimental results. The current theoretical approaches use either the rigid body degrees of freedom where the atomic information are lost or computationally expensive all atom simulations. We have used a hybrid simulation approach incorporating Monte-Carlo Metropolis sampling in the hyperspace of 18 stacking parameters where the interaction energies using AMBER-parm99bsc0 and CHARMM-36 force-fields were calculated from atomic positions. We have also performed stacking energy calculations for structures from Monte-Carlo ensemble by Dispersion corrected density functional theory. The available experimental data with Watson-Crick base pairs are compared to establish the validity of the method. Stacking interaction involving A:U and G:C base pairs with non-canonical G:U base pairs also were calculated and showed that these structures were also sequence dependent. This approach could be useful to generate multiscale modeling of nucleic acids in terms of coarse-grained parameters where the atomic interactions are preserved. This method would also be useful to predict structure and dynamics of different base pair steps containing non Watson-Crick base pairs, as found often in the non-coding RNA structures. © 2015 Wiley Periodicals, Inc. Biopolymers 105: 212-226, 2016. PMID:26600167

  20. Plasmon-induced absorption in stacked metamaterials based on phase retardation

    NASA Astrophysics Data System (ADS)

    Wan, Ming-Li; Yuan, Shu-Qing; Dai, Ke-Jie; Song, Yue-Li; Zhou, Feng-Qun; He, Jin-Na

    2014-10-01

    In this paper, based on the constructive interference of plasmonic dipolar and quadrupolar modes, a classical analogue of electromagnetically induced absorption (EIA) is demonstrated theoretically in a stacked metamaterial consisting of a short metal strip (which acts as a bright resonator) and a long metal strip (acting as a dark resonator), which has been reported to support the electromagnetically induced transparency (EIT) effect. The transition from EIA to EIT can be clearly observed in the absorbance spectra via varying the vertical spacing between two resonant oscillators. With the help of the coupled two-oscillator model, the phase shift between the bright and dark resonance modes is calculated by fitting the simulated absorbance spectra, which reveals the physical mechanisms behind constructive and destructive interference effects in EIT/EIA metamaterials.

  1. Applications of a travelling wave-based radio-frequency-only stacked ring ion guide.

    PubMed

    Giles, Kevin; Pringle, Steven D; Worthington, Kenneth R; Little, David; Wildgoose, Jason L; Bateman, Robert H

    2004-01-01

    The use of radio-frequency (RF)-only ion guides for efficient transport of ions through regions of a mass spectrometer where the background gas pressure is relatively high is widespread in present instrumentation. Whilst multiple collisions between ions and the background gas can be beneficial, for example in inducing fragmentation and/or decreasing the spread in ion energies, the resultant reduction of ion axial velocity can be detrimental in modes of operation where a rapidly changing influx of ions to the gas-filled ion guide needs to be reproduced at the exit. In general, the RF-only ion guides presently in use are based on multipole rod sets. Here we report investigations into a new mode of ion propulsion within an RF ion guide based on a stack of ring electrodes. Ion propulsion is produced by superimposing a voltage pulse on the confining RF of an electrode and then moving the pulse to an adjacent electrode and so on along the guide to provide a travelling voltage wave on which the ions can surf. Through appropriate choice of the travelling wave pulse height, velocity and gas pressure it will be shown that the stacked ring ion guide with the travelling wave is effective as a collision cell in a tandem mass spectrometer where fast mass scanning or switching is required, as an ion mobility separator at pressures around 0.2 mbar, as an ion delivery device for enhancement of duty cycle on an orthogonal acceleration time-of-flight (oa-TOF) mass analyser, and as an ion fragmentation device at higher wave velocities. PMID:15386629

  2. Calibration of a radioactive ink-based stack phantom and its applications in nuclear medicine.

    PubMed

    El-Ali, H; Ljungberg, M; Strand, S-E; Palmer, J; Malmgren, L; Nilsson, J

    2003-04-01

    This paper describes a stack phantom useful for imaging complex activity distributions. It is based on images printed with radioactive ink using a commercial ink-jet printer. The application for the phantom is in the evaluation of planar and SPECT scintillation camera images and for validation of Monte Carlo simulated images. The accuracy in generating the activity distributions on paper sheets is especially important. Here we describe the calibration procedure for the ink-jet printer. The goal of the printer calibration is to find the relationship between the digital image count (voxel grey level) and its corresponding activity on the paper sheets (radioactivity). The relationship between the voxel grey level and the radioactivity on the paper sheets (measured by scanning technique and well counter) was found to be logarithmic, and a 3rd degree polynomial was found to fit the relationship. The distribution of radioactivity in the ink cartridge was investigated by pinhole SPECT. The distribution of (99m)Tc solution was found to be homogeneous in the ink solution. Experimental studies were done directly on Monte Carlo simulated heart images from the NCAT phantom. The result showed that the simulated images are similar to the images measured using the ink-jet technique. This stack phantom could be a promising solution with an advantage that the exact geometry generated in Monte Carlo could be imitated in the phantom. The phantom is a very flexible device and clearly much more versatile than conventional phantoms which have a fixed geometry and spatial limitation. PMID:12804045

  3. Ray-parameter based stacking and enhanced pre-conditioning for stable inversion of receiver function data

    NASA Astrophysics Data System (ADS)

    Chen, Youlin; Niu, Fenglin

    2013-09-01

    While inversion of seismic velocity from receiver function data could be instable due to its intrinsic non-linearity and non-uniqueness, improper stacking of receiver function could also introduce significant biases to the resulting velocity structure. In a distance section of receiver functions, the Moho Ps conversion and the two reverberations possess a positive and negative moveout, respectively. Stacking receiver functions without moveout correction could significantly reduce and distort the amplitude and waveform of these phases. Inversion with these incorrectly stacked receiver functions will thus inevitably introduce artefacts to the resulting velocity structure. In this study, we have improved the inversion procedure in two ways. First, we introduce a ray-parameter based (RPB) stacking method to correctly construct receiver function data for inversion. Specifically we develop a `four-pin' method that accounts for the moveout effect of the converted and reverberated phases in stacking individual receiver functions recorded at various distances. Secondly, we divide the receiver function trace into conversion and reverberation windows and assign different weights between the two windows in the inversion. More weight is given to the Ps conversion window in resolving the shallow structure, which can be nearly fixed in the successive inversion of deeper structure. We also employ other pre-conditioning proposed by previous studies, such as balancing the receiver function data being filtered with different Gaussian filters, smoothing the velocity model and further regulating the model based on existing information. We compute synthetic receiver functions at distances between 30° and 90° from a target model and then use the RPB stacking method to generate the input data for various inversions (iterative linear) with different initial models. Our inversions with enhanced pre-conditioning and RPB stacked data demonstrate a good capability in recovering the target

  4. Degradation behavior of Mg-based biomaterials containing different long-period stacking ordered phases

    PubMed Central

    Peng, Qiuming; Guo, Jianxin; Fu, Hui; Cai, Xuecheng; Wang, Yanan; Liu, Baozhong; Xu, Zhigang

    2014-01-01

    Long-period stacking ordered (LPSO) phases play an essential role in the development of magnesium alloys because they have a direct effect on mechanical and corrosion properties of the alloys. The LPSO structures are mostly divided to 18R and 14H. However, to date there are no consistent opinions about their degradation properties although both of them can improve mechanical properties. Herein we have successfully obtained two LPSO phases separately in the same Mg-Dy-Zn system and comparatively investigated the effect of different LPSO phases on degradation behavior in 0.9 wt.% NaCl solution. Our results demonstrate that a fine metastable 14H-LPSO phase in grain interior is more effective to improve corrosion resistance due to the presence of a homogeneous oxidation film and rapid film remediation ability. The outstanding corrosion resistant Mg-Dy-Zn based alloys with a metastable 14H-LPSO phase, coupled with low toxicity of alloying elements, are highly desirable in the design of novel Mg-based biomaterials, opening up a new avenue in the area of bio-Mg. PMID:24401851

  5. Thin Co/Ni-based bottom pinned spin-transfer torque magnetic random access memory stacks with high annealing tolerance

    NASA Astrophysics Data System (ADS)

    Tomczak, Y.; Swerts, J.; Mertens, S.; Lin, T.; Couet, S.; Liu, E.; Sankaran, K.; Pourtois, G.; Kim, W.; Souriau, L.; Van Elshocht, S.; Kar, G.; Furnemont, A.

    2016-01-01

    Spin-transfer torque magnetic random access memory (STT-MRAM) is considered as a replacement for next generation embedded and stand-alone memory applications. One of the main challenges in the STT-MRAM stack development is the compatibility of the stack with CMOS process flows in which thermal budgets up to 400 °C are applied. In this letter, we report on a perpendicularly magnetized MgO-based tunnel junction (p-MTJ) on a thin Co/Ni perpendicular synthetic antiferromagnetic layer with high annealing tolerance. Tunnel magneto resistance (TMR) loss after annealing occurs when the reference layer loses its perpendicular magnetic anisotropy due to reduction of the CoFeB/MgO interfacial anisotropy. A stable Co/Ni based p-MTJ stack with TMR values of 130% at resistance-area products of 9 Ω μm2 after 400 °C anneal is achieved via moment control of the Co/Ta/CoFeB reference layer. Thinning of the CoFeB polarizing layer down to 0.8 nm is the key enabler to achieve 400 °C compatibility with limited TMR loss. Thinning the Co below 0.6 nm leads to a loss of the antiferromagnetic interlayer exchange coupling strength through Ru. Insight into the thickness and moment engineering of the reference layer is displayed to obtain the best magnetic properties and high thermal stability for thin Co/Ni SAF-based STT-MRAM stacks.

  6. Investigation of Ruthenium Dissolution in Advanced Membrane Electrode Assemblies for Direct Methanol Based Fuel Cell Stacks

    NASA Technical Reports Server (NTRS)

    Valdez, Thomas I.; Firdosy, S.; Koel, B. E.; Narayanan, S. R.

    2005-01-01

    Dissolution of ruthenium was observed in the 80-cell stack. Duration testing was performed in single cell MEAs to determine the pathway of cell degradation. EDAX analysis on each of the single cell MEAs has shown that the Johnson Matthey commercial catalyst is stable in DMFC operation for 250 hours, no ruthenium dissolution was observed. Changes in the hydrophobicity of the cathode backing papers was minimum. Electrode polarization analysis revealed that the MEA performance loss is attributed to changes in the cathode catalyst layer. Ruthenium migration does not seem to occur during cell operation but can occur when methanol is absent from the anode compartment, the cathode compartment has access to air, and the cells in the stack are electrically connected to a load (Shunt Currents). The open-to-air cathode stack design allowed for: a) The MEAs to have continual access to oxygen; and b) The stack to sustain shunt currents. Ruthenium dissolution in a DMFC stack can be prevented by: a) Developing an internally manifolded stacks that seal reactant compartments when not in operation; b) Bringing the cell voltages to zero quickly when not in operation; and c) Limiting the total number of cells to 25 in an effort to limit shunt currents.

  7. DNA base-stacking assay utilizing catalytic hairpin assembly-induced gold nanoparticle aggregation for colorimetric protein sensing.

    PubMed

    Chang, Chia-Chen; Chen, Chie-Pein; Chen, Chen-Yu; Lin, Chii-Wann

    2016-03-18

    A label-free and enzyme-free colorimetric sensing platform for the amplified detection of fibronectin was developed based on an ingenious combination of catalytic hairpin assembly and a base stacking hybridization-based gold nanoparticle aggregation strategy. The detection limit of 2.3 pM is at least one order of magnitude lower than that of established fibronectin biosensors. PMID:26906691

  8. Modular fuel-cell stack assembly

    DOEpatents

    Patel, Pinakin; Urko, Willam

    2008-01-29

    A modular multi-stack fuel-cell assembly in which the fuel-cell stacks are situated within a containment structure and in which a gas distributor is provided in the structure and distributes received fuel and oxidant gases to the stacks and receives exhausted fuel and oxidant gas from the stacks so as to realize a desired gas flow distribution and gas pressure differential through the stacks. The gas distributor is centrally and symmetrically arranged relative to the stacks so that it itself promotes realization of the desired gas flow distribution and pressure differential.

  9. A hybrid microbial fuel cell stack based on single and double chamber microbial fuel cells for self-sustaining pH control

    NASA Astrophysics Data System (ADS)

    Yang, Wei; Li, Jun; Ye, Dingding; Zhang, Liang; Zhu, Xun; Liao, Qiang

    2016-02-01

    Proton accumulation in the anode chamber is the major problem that affects the operational stability and electricity generation performance of double chamber microbial fuel cells (MFCs). In this study, a hybrid microbial fuel cell stack (DS-DS stack) based on single (SCMFCs) and double chamber MFCs (DCMFCs) is proposed for self-sustaining pH control in the MFC stack. It is found that the aerobic microbial oxidation of acetate by the biofilm that is attached to the air cathode of SCMFCs is responsible for the self-sustaining removal of accumulated H+ in the effluent of DCMFCs. Compared with the stack that solely consists of SCMFCs (SS-SS stack) or DCMFCs (DD-DD stack), the hybrid stack exhibits the highest electricity output performance and the most effective conversion of acetate into electricity at high power levels. Furthermore, the hybrid stack demonstrates the operation time of 15.7 ± 1.1 h when the operating voltage is above 0.8 V. This value is much higher than that of the DD-DD (8.5 ± 2.4 h) and SS-SS (8.1 ± 1.4 h) stacks, which suggests that the hybrid stack had a good operational stability.

  10. Stack filters

    NASA Astrophysics Data System (ADS)

    Wendt, P. D.; Coyle, E. J.; Gallagher, N. C., Jr.

    1986-08-01

    A large class of easily implemented nonlinear filters called stack filters are discussed which includes the rank order operators in addition to the compositions of morphological operators. Techniques similar to those used to determine the root signal behavior of median filters are employed to study the convergence properties of the filters, and necessary conditions for a stack filter to preserve monotone regions or edges in signals, and the output distribution of the filters, are obtained. Among the stack filters of window width three are found asymmetric median filters in which one removes only positive going edges, the other removes only negative going edges, while the median filter removes impulses of both signs.

  11. A stacking-fault based microscopic model for platelets in diamond

    NASA Astrophysics Data System (ADS)

    Antonelli, Alex; Nunes, Ricardo

    2005-03-01

    We propose a new microscopic model for the 001 planar defects in diamond commonly called platelets. This model is based on the formation of a metastable stacking fault, which can occur because of the ability of carbon to stabilize in different bonding configurations. In our model the core of the planar defect is basically a double layer of three-fold coordinated sp^2 carbon atoms embedded in the common sp^3 diamond structure. The properties of the model were determined using ab initio total energy calculations. All significant experimental signatures attributed to the platelets, namely, the lattice displacement along the [001] direction, the asymmetry between the [110] and the [11 0] directions, the infrared absorption peak B^' , and broad luminescence lines that indicate the introduction of levels in the band gap, are naturally accounted for in our model. The model is also very appealing from the point of view of kinetics, since naturally occurring shearing processes will lead to the formation of the metastable fault.Authors acknowledge financial support from the Brazilian agencies FAPESP, CNPq, FAEP-UNICAMP, FAPEMIG, and Instituto do Milênio em Nanociências-MCT

  12. An overview of the DII-HEP OpenStack based CMS data analysis

    NASA Astrophysics Data System (ADS)

    Osmani, L.; Tarkoma, S.; Eerola, P.; Komu, M.; Kortelainen, M. J.; Kraemer, O.; Lindén, T.; Toor, S.; White, J.

    2015-05-01

    An OpenStack based private cloud with the Cluster File System has been built and used with both CMS analysis and Monte Carlo simulation jobs in the Datacenter Indirection Infrastructure for Secure High Energy Physics (DII-HEP) project. On the cloud we run the ARC middleware that allows running CMS applications without changes on the job submission side. Our test results indicate that the adopted approach provides a scalable and resilient solution for managing resources without compromising on performance and high availability. To manage the virtual machines (VM) dynamically in an elastic fasion, we are testing the EMI authorization service (Argus) and the Execution Environment Service (Argus-EES). An OpenStackplugin has been developed for Argus-EES. The Host Identity Protocol (HIP) has been designed for mobile networks and it provides a secure method for IP multihoming. HIP separates the end-point identifier and locator role for IP address which increases the network availability for the applications. Our solution leverages HIP for traffic management. This presentation gives an update on the status of the work and our lessons learned in creating an OpenStackbased cloud for HEP.

  13. A Three-Stage Inverter-Based Stacked Power Amplifier in 65 nm Complementary Metal Oxide Semiconductor Process

    NASA Astrophysics Data System (ADS)

    Kiumarsi, Hamid; Mizuochi, Yutaka; Ito, Hiroyuki; Ishihara, Noboru; Masu, Kazuya

    2012-02-01

    A three-stage inverter-based stacked power amplifier (PA) in complementary metal oxide semiconductor (CMOS) process is proposed to overcome low breakdown voltage problem of scaled CMOS technologies. Unlike previous reported stacked PAs which radio frequency choke (RFC) was inevitable, we proposed stacked nMOS and pMOS transistors which effectively eliminates use of RFC. By properly setting self-biased circuits' and transistors' parameters, output impedance could reach up to 50 Ω which together with not employing the RFC makes this topology very appealing for the scalable PA realization. As a proof of concept, a three-stage PA using 65 nm CMOS technology is implemented. With a 6 V power supply for the third stage, the fabricated PA shows a small-signal gain of 36 dB, a saturated output power of 16 dBm and a maximum power added efficiency of 10% at 1 GHz. Using a 7.5 V of power supply, saturated output power reaches 18 dBm. To the best of our knowledge, this is the first reported inverter-based stacked PA.

  14. Using residual stacking to mitigate site-specific errors in order to improve the quality of GNSS-based coordinate time series of CORS

    NASA Astrophysics Data System (ADS)

    Knöpfler, Andreas; Mayer, Michael; Heck, Bernhard

    2014-05-01

    Within the last decades, positioning using GNSS (Global Navigation Satellite Systems; e.g., GPS) has become a standard tool in many (geo-) sciences. The positioning methods Precise Point Positioning and differential point positioning based on carrier phase observations have been developed for a broad variety of applications with different demands for example on accuracy. In high precision applications, a lot of effort was invested to mitigate different error sources: the products for satellite orbits and satellite clocks were improved; the misbehaviour of satellite and receiver antennas compared to an ideal antenna is modelled by calibration values on absolute level, the modelling of the ionosphere and the troposphere is updated year by year. Therefore, within processing of data of CORS (continuously operating reference sites), equipped with geodetic hardware using a sophisticated strategy, the latest products and models nowadays enable positioning accuracies at low mm level. Despite the considerable improvements that have been achieved within GNSS data processing, a generally valid multipath model is still lacking. Therefore, site specific multipath still represents a major error source in precise GNSS positioning. Furthermore, the calibration information of receiving GNSS antennas, which is for instance derived by a robot or chamber calibration, is valid strictly speaking only for the location of the calibration. The calibrated antenna can show a slightly different behaviour at the CORS due to near field multipath effects. One very promising strategy to mitigate multipath effects as well as imperfectly calibrated receiver antennas is to stack observation residuals of several days, thereby, multipath-loaded observation residuals are analysed for example with respect to signal direction, to find and reduce systematic constituents. This presentation will give a short overview about existing stacking approaches. In addition, first results of the stacking approach

  15. Application of pre-stack reverse time migration based on FWI velocity estimation to ground penetrating radar data

    NASA Astrophysics Data System (ADS)

    Liu, Sixin; Lei, Linlin; Fu, Lei; Wu, Junjun

    2014-08-01

    Reverse-time migration (RTM) is used for subsurface imaging to handle complex velocity models including steeply dipping interfaces and dramatic lateral variations and promises better imaging results compared to traditional migration method such as Kirchhoff migration algorithm. RTM has been increasingly used in seismic surveys for hydrocarbon resource explorations. Based on the similarity of kinematics and dynamics between electromagnetic wave and elastic wave, we develop pre-stack RTM method and apply it to process ground penetrating radar (GPR) data. Finite-difference time domain (FDTD) numerical method is used to simulate the electromagnetic wave propagation including forward and backward extrapolations, the cross-correlation imaging condition is used to obtain the final image. In order to provide a velocity model with relatively higher accuracy as the initial velocity model for RTM, we apply a full waveform inversion (FWI) in time domain to estimate the subsurface velocity structure based on reflection radar data. For testing the effectiveness of the algorithm, we have constructed a complex geological model, common-offset radar data and common-shot profile (CSP) radar reflection data are synthesized. All data are migrated with traditional Kirchhoff migration method and pre-stack RTM method separately, the migration results from pre-stack RTM show better coincidence with the true model. Furthermore, we have performed a physical experiment in a sandbox where a polyvinyl chloride (PVC) box is buried in the sand, the obtained common-offset radar data and common-shot radar data are migrated by using Kirchhoff migration method and pre-stack RTM algorithm separately, the pre-stack RTM result shows that RTM algorithm could get better imaging results.

  16. Omnidirectional mirror based on Bragg stacks with a periodic gain-loss modulation

    SciTech Connect

    Manzanares-Martinez, Jesus; Ham-Rodriguez, Carlos Ivan; Moctezuma-Enriquez, Damian; Manzanares-Martinez, Betsabe

    2014-01-15

    In this work we demonstrate that a Bragg Stack with a periodic gain-loss modulation can function as an Omnidirectional Mirror (OM) with complete reflection at any angle of incidence irrespective of the light polarization. The Bragg Stack is composed by the periodic variation of two layers with the same value of the real part of the refractive index (n{sub r}) and a periodic modulation in the imaginary part (n{sub i}). The origin of the band gaps is due to the interference of complex waves with propagating and evanescent fields in each layer. It is found that the band gaps are wider as the contrast n{sub i}/n{sub r} increases. We have found the ambient conditions to obtain an OM considering an auxiliary medium n{sup ′} external to the Bragg Stack.

  17. Analysis of radionuclide concentration in air released through the stack of a radiopharmaceutical production facility based on a medical cyclotron

    NASA Astrophysics Data System (ADS)

    Giardina, M.; Tomarchio, E.; Greco, D.

    2015-11-01

    Positron emitting radionuclides are increasingly used in medical diagnostics and the number of radiopharmaceutical production facilities have been estimated to be growing worldwide. During the process of production and/or patient administration of radiopharmaceuticals, an amount of these radionuclides might become airborne and escape into the environment. Therefore, the analysis of radionuclide concentration in the air released to the stack is a very important issue to evaluate the dose to the population living around the plant. To this end, sampling and measurement of radionuclide concentration in air released through the stack of a Nuclear Medicine Center (NMC), provided with a cyclotron for radiopharmaceuticals production, must be routinely carried out with an automatic measurement system. In this work is presented the air monitoring system realized at "San Gaetano" NMC at Bagheria (Italy) besides the analysis of the recorded stack relesead air concentration data. Sampling of air was carried out continuously and gamma-ray spectrometric measurement are made on-line and for a short time by using a shielded Marinelli beaker filled with sampled air and a gamma detector. The use of this system allows to have 1440 values of air concentration per day from 2002, year of the start of operation with the cyclotron. Therefore, the concentration values are very many and an analysis software is needed to determine the dose to the population. A comparison with the results of a simulation code based on a Gaussian Plume air dispersion modelling allow us to confirm the no-radiological significance of the stack effluent releases in terms of dose to population and to evaluate possible improvements in the plant devices to reduce the air concentration at stack.

  18. UV excitation of single DNA and RNA strands produces high yields of exciplex states between two stacked bases

    PubMed Central

    Takaya, Tomohisa; Su, Charlene; de La Harpe, Kimberly; Crespo-Hernández, Carlos E.; Kohler, Bern

    2008-01-01

    Excited electronic states created by UV excitation of the diribonucleoside monophosphates ApA, ApG, ApC, ApU, and CpG were studied by the femtosecond transient-absorption technique. Bleach recovery signals recorded at 252 nm show that long-lived excited states are formed in all five dinucleosides. The lifetimes of these states exceed those measured in equimolar mixtures of the constituent mononucleotides by one to two orders of magnitude, indicating that electronic coupling between proximal nucleobases dramatically slows the relaxation of excess electronic energy. The decay rates of the long-lived states decrease with increasing energy of the charge-transfer state produced by transferring an electron from one base to another. The charge-transfer character of the long-lived states revealed by this analysis supports their assignment to excimer or exciplex states. Identical bleach recovery signals were seen for ApA, (A)4, and poly(A) at delay times >10 ps after photoexcitation. This indicates that excited states localized on a stack of just two bases are the common trap states independent of the number of stacked nucleotides. The fraction of initial excitations that decay to long-lived exciplex states is approximately equal to the fraction of stacked bases determined by NMR measurements. This supports a model in which excitations associated with two stacked bases decay to exciplex states, whereas excitations in unstacked bases decay via ultrafast internal conversion. These results establish the importance of charge transfer-quenching pathways for UV-irradiated RNA and DNA in room-temperature solution. PMID:18647840

  19. UV excitation of single DNA and RNA strands produces high yields of exciplex states between two stacked bases.

    PubMed

    Takaya, Tomohisa; Su, Charlene; de La Harpe, Kimberly; Crespo-Hernández, Carlos E; Kohler, Bern

    2008-07-29

    Excited electronic states created by UV excitation of the diribonucleoside monophosphates ApA, ApG, ApC, ApU, and CpG were studied by the femtosecond transient-absorption technique. Bleach recovery signals recorded at 252 nm show that long-lived excited states are formed in all five dinucleosides. The lifetimes of these states exceed those measured in equimolar mixtures of the constituent mononucleotides by one to two orders of magnitude, indicating that electronic coupling between proximal nucleobases dramatically slows the relaxation of excess electronic energy. The decay rates of the long-lived states decrease with increasing energy of the charge-transfer state produced by transferring an electron from one base to another. The charge-transfer character of the long-lived states revealed by this analysis supports their assignment to excimer or exciplex states. Identical bleach recovery signals were seen for ApA, (A)(4), and poly(A) at delay times >10 ps after photoexcitation. This indicates that excited states localized on a stack of just two bases are the common trap states independent of the number of stacked nucleotides. The fraction of initial excitations that decay to long-lived exciplex states is approximately equal to the fraction of stacked bases determined by NMR measurements. This supports a model in which excitations associated with two stacked bases decay to exciplex states, whereas excitations in unstacked bases decay via ultrafast internal conversion. These results establish the importance of charge transfer-quenching pathways for UV-irradiated RNA and DNA in room-temperature solution. PMID:18647840

  20. Cotton gin total particulate matter emissions based on EPA stack sampling methodologies

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A project to characterize cotton gin emissions in terms of stack sampling was conducted during the 2008 through 2011 ginning seasons. The impetus behind the project was the urgent need to collect additional cotton gin emissions data to address current regulatory issues. EPA AP-42 emission factors ar...

  1. The physical origin of dispersion in accumulation in InGaAs based metal oxide semiconductor gate stacks

    NASA Astrophysics Data System (ADS)

    Krylov, Igor; Ritter, Dan; Eizenberg, Moshe

    2015-05-01

    Dispersion in accumulation is a widely observed phenomenon in technologically important InGaAs gate stacks. Two principal different interface defects were proposed as the physical origin of this phenomenon—disorder induced gap states and border traps. While the gap states are located at the semiconductor side of the interface, the border traps are related to the dielectric side. The study of Al2O3, HfO2, and an intermediate composition of HfxAlyO deposited on InGaAs enabled us to find a correlation between the dispersion and the dielectric/InGaAs band offset. At the same time, no change in the dispersion was observed after applying an effective pre-deposition treatment which results in significant reduction of the interface states. Both observations prove that border traps are the physical origin of the dispersion in accumulation in InGaAs based metal-oxide-semiconductor gate stacks.

  2. Stacking of the mutagenic base analogue 5-bromouracil: energy landscapes of pyrimidine dimers in gas phase and water.

    PubMed

    Holroyd, Leo F; van Mourik, Tanja

    2015-11-11

    The potential energy surfaces of stacked base pairs consisting of cytosine (C), thymine (T), uracil (U) and the mutagenic thymine analogue 5-bromouracil (BrU) have been searched to obtain all possible minima. Minima and transition states were optimised at the counterpoise-corrected M06-2X/6-31+G(d) level, both in the gas phase and in water, modelled by the polarizable continuum model. The stacked dimers studied are BrU/BrU, C/BrU, C/C, C/T, C/U, T/BrU and T/U. Both face-to-back and face-to-face structures were considered. Free energies were calculated at 298.15 K. Together with U/U, T/T and BrU/U results from previous work, these results complete the family consisting of every stacked dimer combination consisting of C, T, U and BrU. The results were used to assess the hypothesis suggested in the literature that BrU stacks stronger than T, which could stabilise the mispair formed by BrU and guanine. In the gas phase, structures of C/BrU, T/BrU and U/BrU with greater zero-point-corrected binding energies than C/T, T/T and U/T, respectively, were found, with differences in favour of BrU of 3.1 kcal mol(-1), 1.7 kcal mol(-1) and 0.5 kcal mol(-1), respectively. However, the structure of these dimers differed considerably from anything encountered in DNA. When only the dimers with the most "DNA-like" twist (±36°) were considered, C/BrU and T/BrU were still more strongly bound than C/T and T/T, by 0.5 kcal mol(-1) and 1.7 kcal mol(-1), respectively. However, when enthalpic and/or solvent contributions were taken into account, the stacking advantage of BrU was reversed in the gas phase and mostly nullified in water. Enhanced stacking therefore does not seem a plausible mechanism for the considerably greater ability of BrU-G mispairs over T-G mispairs to escape enzymatic repair. PMID:26507806

  3. Stacking Up

    ERIC Educational Resources Information Center

    Naylor, Jim

    2005-01-01

    Chimneys and stacks appear to be strong and indestructible, but chimneys begin to deteriorate from the moment they are built. Early on, no signs are apparent; but deterioration accelerates in subsequent years, and major repairs are soon needed instead of minor maintenance. With proper attention, most structures can be repaired and continue to…

  4. Differential equation-based seismic data filtering

    SciTech Connect

    Li, Jianchao; Larner, K.

    1992-05-01

    Suppressing noise and enhancing useful seismic signal by filtering is one of the important tasks of seismic data processing. conventional filtering methods are implemented through either the convolution operation or various mathematical transforms. In this paper, we describe a methodology for studying and implementing filters, which, unlike those conventional filtering methods, is based on solving differential equations in the time and space domain. We call this kind of filtering differential equation-based filtering (DEBF). DEBF does not require that seismic data be stationary, so filtering parameters can vary with every time and space point. Also, in 2-D and 3-D, DEBF has higher computational efficiency than do conventional multiple-trace filtering methods. Examples with synthetic and field seismic data show the DEBF methods presented here to be efficient and effective.

  5. Pressurized electrolysis stack with thermal expansion capability

    DOEpatents

    Bourgeois, Richard Scott

    2015-07-14

    The present techniques provide systems and methods for mounting an electrolyzer stack in an outer shell so as to allow for differential thermal expansion of the electrolyzer stack and shell. Generally, an electrolyzer stack may be formed from a material with a high coefficient of thermal expansion, while the shell may be formed from a material having a lower coefficient of thermal expansion. The differences between the coefficients of thermal expansion may lead to damage to the electrolyzer stack as the shell may restrain the thermal expansion of the electrolyzer stack. To allow for the differences in thermal expansion, the electrolyzer stack may be mounted within the shell leaving a space between the electrolyzer stack and shell. The space between the electrolyzer stack and the shell may be filled with a non-conductive fluid to further equalize pressure inside and outside of the electrolyzer stack.

  6. Q-band ferromagnetic resonance for CoPt-based stacked perpendicular recording media with interlayer exchange coupling

    NASA Astrophysics Data System (ADS)

    Hinata, Shintaro; Saito, Shin; Hasegawa, Daiji; Takahashi, Migaku

    2011-04-01

    The ferromagnetic interlayer exchange coupling Jinter for stacked perpendicular recording media with a granular layer (GL)/interlayer (IL)/alloy capping layer (CL) structure was quantitatively evaluated by Q-band ferromagnetic resonance (FMR). Two resonances with acoustic and optical precession modes were observed in the FMR signals from the stacked media. Fitting using the Landau-Lifshitz-Gilbert (LLG) equation indicated that Jinter increased from 0.55 to 1.83 erg/cm2 when the Pt IL thickness was reduced from 2.0 to 1.0 nm for media based on Co82Cr10Pt8-CL (4 nm) and Co74Pt16Cr10-8 mol (SiO2)-GL (16 nm). The optimum Pt IL thickness at which the switching field distribution was minimized due to a large reduction in the saturation field of the stacked media was found to correspond to the boundary condition between antiparallel and parallel precession of the magnetic moments of the GL and CL in FMR.

  7. Increased Multilayer Fabrication and RF Characterization of a High-Density Stacked MIM Capacitor Based on Selective Etching

    SciTech Connect

    Tseng, VFG; Xie, HK

    2014-07-01

    This paper presents the fabrication and characterization of a high-density multilayer stacked metal-insulator-metal (MIM) capacitor based on a novel process of depositing the MIM multilayer on pillars followed by polishing and selective etching steps to form a stacked capacitor with merely three photolithography steps. In this paper, the pillars were made of glass to prevent substrate loss, whereas an oxide-nitride-oxide dielectric was employed for lower leakage, better voltage/frequency linearity, and better stress compensation. MIM capacitors with six dielectric layers were successfully fabricated, yielding capacitance density of 3.8 fF/mu m(2), maximum capacitance of 2.47 nF, and linear and quadratic voltage coefficients of capacitance below 21.2 ppm/V and 2.31 ppm/V-2. The impedance was measured from 40 Hz to 3 GHz, and characterized by an analytically derived equivalent circuit model to verify the radio frequency applicability. The multilayer stacking-induced plate resistance mismatch and its effect on the equivalent series resistance (ESR) and effective capacitance was also investigated, which can be counteracted by a corrected metal thickness design. A low ESR of 800 m Omega was achieved, whereas the self-resonance frequency was >760 MHz, successfully demonstrating the feasibility of this method to scale up capacitance densities for high-quality-factor, high-frequency, and large-value MIM capacitors.

  8. Fast concurrent array-based stacks, queues and deques using fetch-and-increment-bounded, fetch-and-decrement-bounded and store-on-twin synchronization primitives

    SciTech Connect

    Chen, Dong; Gara, Alana; Heidelberger, Philip; Kumar, Sameer; Ohmacht, Martin; Steinmacher-Burow, Burkhard; Wisniewski, Robert

    2014-09-16

    Implementation primitives for concurrent array-based stacks, queues, double-ended queues (deques) and wrapped deques are provided. In one aspect, each element of the stack, queue, deque or wrapped deque data structure has its own ticket lock, allowing multiple threads to concurrently use multiple elements of the data structure and thus achieving high performance. In another aspect, new synchronization primitives FetchAndIncrementBounded (Counter, Bound) and FetchAndDecrementBounded (Counter, Bound) are implemented. These primitives can be implemented in hardware and thus promise a very fast throughput for queues, stacks and double-ended queues.

  9. Multi-kW high-brightness fiber coupled diode laser based on two dimensional stacked tailored diode bars

    NASA Astrophysics Data System (ADS)

    Bayer, Andreas; Unger, Andreas; Köhler, Bernd; Küster, Matthias; Dürsch, Sascha; Kissel, Heiko; Irwin, David A.; Bodem, Christian; Plappert, Nora; Kersten, Maik; Biesenbach, Jens

    2016-03-01

    The demand for high brightness fiber coupled diode laser devices in the multi kW power region is mainly driven by industrial applications for materials processing, like brazing, cladding and metal welding, which require a beam quality better than 30 mm x mrad and power levels above 3kW. Reliability, modularity, and cost effectiveness are key factors for success in the market. We have developed a scalable and modular diode laser architecture that fulfills these requirements through use of a simple beam shaping concept based on two dimensional stacking of tailored diode bars mounted on specially designed, tap water cooled heat sinks. The base element of the concept is a tailored diode laser bar with an epitaxial and lateral structure designed such that the desired beam quality in slow-axis direction can be realized without using sophisticated beam shaping optics. The optical design concept is based on fast-axis collimator (FAC) and slow-axis collimator (SAC) lenses followed by only one additional focusing optic for efficient coupling into a 400 μm fiber with a numerical aperture (NA) of 0.12. To fulfill the requirements of scalability and modularity, four tailored bars are populated on a reduced size, tap water cooled heat sink. The diodes on these building blocks are collimated simply via FAC and SAC. The building blocks can be stacked vertically resulting in a two-dimensional diode stack, which enables a compact design of the laser source with minimum beam path length. For a single wavelength, up to eight of these building blocks, implying a total of 32 tailored bars, can be stacked into a submodule, polarization multiplexed, and coupled into a 400 μm, 0.12NA fiber. Scalability into the multi kW region is realized by wavelength combining of replaceable submodules in the spectral range from 900 - 1100 nm. We present results of a laser source based on this architecture with an output power of more than 4 kW and a beam quality of 25 mm x mrad.

  10. A scalable infrastructure for CMS data analysis based on OpenStack Cloud and Gluster file system

    NASA Astrophysics Data System (ADS)

    Toor, S.; Osmani, L.; Eerola, P.; Kraemer, O.; Lindén, T.; Tarkoma, S.; White, J.

    2014-06-01

    The challenge of providing a resilient and scalable computational and data management solution for massive scale research environments requires continuous exploration of new technologies and techniques. In this project the aim has been to design a scalable and resilient infrastructure for CERN HEP data analysis. The infrastructure is based on OpenStack components for structuring a private Cloud with the Gluster File System. We integrate the state-of-the-art Cloud technologies with the traditional Grid middleware infrastructure. Our test results show that the adopted approach provides a scalable and resilient solution for managing resources without compromising on performance and high availability.

  11. Differential Search Algorithm Based Edge Detection

    NASA Astrophysics Data System (ADS)

    Gunen, M. A.; Civicioglu, P.; Beşdok, E.

    2016-06-01

    In this paper, a new method has been presented for the extraction of edge information by using Differential Search Optimization Algorithm. The proposed method is based on using a new heuristic image thresholding method for edge detection. The success of the proposed method has been examined on fusion of two remote sensed images. The applicability of the proposed method on edge detection and image fusion problems have been analysed in detail and the empirical results exposed that the proposed method is useful for solving the mentioned problems.

  12. Algorithmic Differentiation for Calculus-based Optimization

    NASA Astrophysics Data System (ADS)

    Walther, Andrea

    2010-10-01

    For numerous applications, the computation and provision of exact derivative information plays an important role for optimizing the considered system but quite often also for its simulation. This presentation introduces the technique of Algorithmic Differentiation (AD), a method to compute derivatives of arbitrary order within working precision. Quite often an additional structure exploitation is indispensable for a successful coupling of these derivatives with state-of-the-art optimization algorithms. The talk will discuss two important situations where the problem-inherent structure allows a calculus-based optimization. Examples from aerodynamics and nano optics illustrate these advanced optimization approaches.

  13. Average Gait Differential Image Based Human Recognition

    PubMed Central

    Chen, Jinyan; Liu, Jiansheng

    2014-01-01

    The difference between adjacent frames of human walking contains useful information for human gait identification. Based on the previous idea a silhouettes difference based human gait recognition method named as average gait differential image (AGDI) is proposed in this paper. The AGDI is generated by the accumulation of the silhouettes difference between adjacent frames. The advantage of this method lies in that as a feature image it can preserve both the kinetic and static information of walking. Comparing to gait energy image (GEI), AGDI is more fit to representation the variation of silhouettes during walking. Two-dimensional principal component analysis (2DPCA) is used to extract features from the AGDI. Experiments on CASIA dataset show that AGDI has better identification and verification performance than GEI. Comparing to PCA, 2DPCA is a more efficient and less memory storage consumption feature extraction method in gait based recognition. PMID:24895648

  14. Effects of alloying element and temperature on the stacking fault energies of dilute Ni-base superalloys

    NASA Astrophysics Data System (ADS)

    Shang, S. L.; Zacherl, C. L.; Fang, H. Z.; Wang, Y.; Du, Y.; Liu, Z. K.

    2012-12-01

    A systematic study of stacking fault energy (γSF) resulting from induced alias shear deformation has been performed by means of first-principles calculations for dilute Ni-base superalloys (Ni23X and Ni71X) for various alloying elements (X) as a function of temperature. Twenty-six alloying elements are considered, i.e., Al, Co, Cr, Cu, Fe, Hf, Ir, Mn, Mo, Nb, Os, Pd, Pt, Re, Rh, Ru, Sc, Si, Ta, Tc, Ti, V, W, Y, Zn, and Zr. The temperature dependence of γSF is computed using the proposed quasistatic approach based on a predicted γSF-volume-temperature relationship. Besides γSF, equilibrium volume and the normalized stacking fault energy (ΓSF = γSF/Gb, with G the shear modulus and b the Burgers vector) are also studied as a function of temperature for the 26 alloying elements. The following conclusions are obtained: all alloying elements X studied herein decrease the γSF of fcc Ni, approximately the further the alloying element X is from Ni on the periodic table, the larger the decrease of γSF for the dilute Ni-X alloy, and roughly the γSF of Ni-X decreases with increasing equilibrium volume. In addition, the values of γSF for all Ni-X systems decrease with increasing temperature (except for Ni-Cr at higher Cr content), and the largest decrease is observed for pure Ni. Similar to the case of the shear modulus, the variation of γSF for Ni-X systems due to various alloying elements is traceable from the distribution of (magnetization) charge density: the spherical distribution of charge density around a Ni atom, especially a smaller sphere, results in a lower value of γSF due to the facility of redistribution of charges. Computed stacking fault energies and the related properties are in favorable accord with available experimental and theoretical data.

  15. STACK GAS REHEAT EVALUATION

    EPA Science Inventory

    The report gives results of technical and economic evaluations of stack gas reheat (SGR) following wet flue gas desulfurization (FGD) for coal-fired power plants. The evaluations were based on information from literature and a survey of FGD users, vendors, and architect/engineer ...

  16. Oxygen migration in TiO{sub 2}-based higher-k gate stacks

    SciTech Connect

    Kim, Sang Bum; Brown, Stephen L.; Rossnagel, Stephen M.; Bruley, John; Copel, Matthew; Hopstaken, Marco J. P.; Narayanan, Vijay; Frank, Martin M.

    2010-03-15

    We report on the stability of high-permittivity (high-k) TiO{sub 2} films incorporated in metal-oxide-silicon capacitor structures with a TiN metal gate electrode, focusing on oxygen migration. Titanium oxide films are deposited by either Ti sputtering [physical vapor deposition (PVD)] followed by radical shower oxidation or by plasma-enhanced atomic layer deposition (PEALD) from titanium isopropoxide (Ti{l_brace}OCH(CH{sub 3}){sub 2{r_brace}4}) and O{sub 2} plasma. Both PVD and PEALD films result in near-stoichiometric TiO{sub 2} prior to high-temperature annealing. We find that dopant activation anneals of TiO{sub 2}-containing gate stacks at 1000 deg. C cause 5 A or more of additional SiO{sub 2} to be formed at the gate-dielectric/Si-channel interface. Furthermore, we demonstrate for the first time that oxygen released from TiO{sub 2} diffuses through the TiN gate electrode and oxidizes the poly-Si contact. The thickness of this upper SiO{sub 2} layer continues to increase with increasing TiO{sub 2} thickness, while the thickness of the regrown SiO{sub 2} at the gate-dielectric/Si interface saturates. The upper SiO{sub 2} layer degrades gate stack capacitance, and simultaneously the oxygen-deficient TiO{sub x} becomes a poor insulator. In an attempt to mitigate O loss from the TiO{sub 2}, top and bottom Al{sub 2}O{sub 3} layers are added to the TiO{sub 2} gate dielectric as oxygen barriers. However, they are found to be ineffective, due to Al{sub 2}O{sub 3}-TiO{sub 2} interdiffusion during activation annealing. Bottom HfO{sub 2}/Si{sub 3}N{sub 4} interlayers are found to serve as more effective oxygen barriers, reducing, though not preventing, oxygen downdiffusion.

  17. Differential privacy based on importance weighting

    PubMed Central

    Ji, Zhanglong

    2014-01-01

    This paper analyzes a novel method for publishing data while still protecting privacy. The method is based on computing weights that make an existing dataset, for which there are no confidentiality issues, analogous to the dataset that must be kept private. The existing dataset may be genuine but public already, or it may be synthetic. The weights are importance sampling weights, but to protect privacy, they are regularized and have noise added. The weights allow statistical queries to be answered approximately while provably guaranteeing differential privacy. We derive an expression for the asymptotic variance of the approximate answers. Experiments show that the new mechanism performs well even when the privacy budget is small, and when the public and private datasets are drawn from different populations. PMID:24482559

  18. Charge-plasma based dual-material and gate-stacked architecture of junctionless transistor for enhanced analog performance

    NASA Astrophysics Data System (ADS)

    Amin, S. Intekhab; Sarin, R. K.

    2015-12-01

    Charge plasma based doping-less dual material double gate (DL-DMDG) junctionless transistor (JLT) is proposed. This paper also demonstrate the potential impact of gate stacking (GS) (high-k + Sio2) on DL-DMDG (DL-GSDMDG) JLT device. The efficient charge plasma is created in an intrinsic silicon film to form n + source/drain (S/D) by selecting proper work function of S/D electrode which helps to minimize threshold voltage fluctuation that occurs in a heavily doped JLT device. The analog performance parameters are analyzed for both the device structures. Results are also compared with conventional dual material double gate (DMDG) and gate stacked dual material double gate (GSDMDG) JLT devices. A DL-DMDG JLT device shows improved early voltage (VEA), intrinsic gain (AV = gm/gDS) and reduced output conductance (gDS) as compared to conventional DMDG and GSDMDG JLT devices. These values are further improved for DL-GSDMDG JLT. The effect of control gate length (L1) for a fixed gate length (L = L1+L2) are also analyzed.

  19. Interface engineering through atomic dopants in HfO2-based gate stacks

    NASA Astrophysics Data System (ADS)

    Zhu, H.; Ramanath, Ganpati; Ramprasad, R.

    2013-09-01

    Controlling the effective work function (ϕeff) of metal electrodes is critical and challenging in metal-oxide-semiconductor field effect transistors. The introduction of atomic dopants (also referred to as "capping" layers) is an emerging approach to controllably modify ϕeff. Here, we investigate the energetic preference of the location of La, Y, Sc, Al, Ce, Ti, and Zr as atomic dopants within a model Pt/HfO2/Si stack and the resulting variation of ϕeff using density functional theory calculations. Our results indicate that all the considered atomic dopants prefer to be situated at the interfaces. The dopant-induced variation of ϕeff is found to be strongly correlated to the dopant electronegativity and location. Dopants at the metal/HfO2 interface decrease ϕeff with increasing dopant electronegativity, while a contrary trend is seen for dopants at the Si/HfO2 interface. These results are consistent with available experimental data for La, Al, and Ti doping. Our findings, especially the identified correlations, have important implications for the further optimization and "scaling down" of transistors.

  20. Limited-memory BFGS based least-squares pre-stack Kirchhoff depth migration

    NASA Astrophysics Data System (ADS)

    Wu, Shaojiang; Wang, Yibo; Zheng, Yikang; Chang, Xu

    2015-08-01

    Least-squares migration (LSM) is a linearized inversion technique for subsurface reflectivity estimation. Compared to conventional migration algorithms, it can improve spatial resolution significantly with a few iterative calculations. There are three key steps in LSM, (1) calculate data residuals between observed data and demigrated data using the inverted reflectivity model; (2) migrate data residuals to form reflectivity gradient and (3) update reflectivity model using optimization methods. In order to obtain an accurate and high-resolution inversion result, the good estimation of inverse Hessian matrix plays a crucial role. However, due to the large size of Hessian matrix, the inverse matrix calculation is always a tough task. The limited-memory BFGS (L-BFGS) method can evaluate the Hessian matrix indirectly using a limited amount of computer memory which only maintains a history of the past m gradients (often m < 10). We combine the L-BFGS method with least-squares pre-stack Kirchhoff depth migration. Then, we validate the introduced approach by the 2-D Marmousi synthetic data set and a 2-D marine data set. The results show that the introduced method can effectively obtain reflectivity model and has a faster convergence rate with two comparison gradient methods. It might be significant for general complex subsurface imaging.

  1. Scaleable multi-format QCW pump stacks based on 200W laser diode bars and mini bars at 808nm and 940nm

    NASA Astrophysics Data System (ADS)

    Berk, Yuri; Karni, Yoram; Klumel, Genady; Openhaim, Yaakov; Cohen, Shalom; Yanson, Dan

    2011-03-01

    Advanced solid state laser architectures place increasingly demanding requirements on high-brightness, low-cost QCW laser diode pump sources, with custom apertures both for side and end rod pumping configurations. To meet this need, a new series of scaleable pump sources at 808nm and 940nm was developed. The stacks, available in multiple output formats, allow for custom aperture filling by varying both the length and quantity of stacked laser bars. For these products, we developed next-generation laser bars based on improved epitaxial wafer designs delivering power densities of 20W/mm of emission aperture. With >200W of peak QCW power available from a full-length 1cm bar, we have demonstrated power scaling to over 2kW in 10-bar stacks with 55% wall plug efficiency. We also present the design and performance of several stack configurations using full-length and reduced-length (mini) bars that demonstrate the versatility of both the bar and packaging designs. We illustrate how the ROBUST HEAD packaging technology developed at SCD is capable of accommodating variable bar length, pitch and quantity for custom rod pumping geometries. The excellent all-around performance of the stacks is supported by reliability data in line with the previously reported 20 Gshot space-grade qualification of SCD's stacks.

  2. Chip-to-chip interconnects based on 3D stacking of optoelectrical dies on Si

    NASA Astrophysics Data System (ADS)

    Duan, P.; Raz, O.; Smalbrugge, B. E.; Duis, J.; Dorren, H. J. S.

    2012-01-01

    We demonstrate a new approach to increase the optical interconnection bandwidth density by stacking the opto-electrical dies directly on the CMOS driver. The suggested implementation is aiming to provide a wafer scale process which will make the use of wire bonding redundant and will allow for impedance matched metallic wiring between the electronic driving circuit and its opto-electronic counter part. We suggest the use of a thick photoresist ramp between CMOS driver and opto-electrical dies surface as the bridge for supporting co-plannar waveguides (CPW) electrically plated with lithographic accuracy. In this way all three dimensions of the interconnecting metal layer, width, length and thickness can be completely controlled. In this 1st demonstration all processing is done on commercially available devices and products, and is compatible with CMOS processing technology. To test the applicability of CPW instead of wire bonds for interconnecting the CMOS circuit and opto-electronic chips, we have made test samples and tested their performance at speeds up to 10 Gbps. In this demonstration, a silicon substrate was used on which we evaporated gold co-planar waveguides (CPW) to mimic a wire on the driver. An optical link consisting of a VCSEL chip and a photodiode chip has been assembled and fully characterized using optical coupling into and out of a multimode fiber (MMF). A 10 Gb/s 27-1 NRZ PRBS signal transmitted from one chip to another chip was detected error free. A 4 dB receiver sensitivity penalty is measured for the integrated device compared to a commercial link.

  3. Effects of alloying element and temperature on the stacking fault energies of dilute Ni-base superalloys.

    PubMed

    Shang, S L; Zacherl, C L; Fang, H Z; Wang, Y; Du, Y; Liu, Z K

    2012-12-19

    A systematic study of stacking fault energy (γ(SF)) resulting from induced alias shear deformation has been performed by means of first-principles calculations for dilute Ni-base superalloys (Ni(23)X and Ni(71)X) for various alloying elements (X) as a function of temperature. Twenty-six alloying elements are considered, i.e., Al, Co, Cr, Cu, Fe, Hf, Ir, Mn, Mo, Nb, Os, Pd, Pt, Re, Rh, Ru, Sc, Si, Ta, Tc, Ti, V, W, Y, Zn, and Zr. The temperature dependence of γ(SF) is computed using the proposed quasistatic approach based on a predicted γ(SF)-volume-temperature relationship. Besides γ(SF), equilibrium volume and the normalized stacking fault energy (Γ(SF) = γ(SF)/Gb, with G the shear modulus and b the Burgers vector) are also studied as a function of temperature for the 26 alloying elements. The following conclusions are obtained: all alloying elements X studied herein decrease the γ(SF) of fcc Ni, approximately the further the alloying element X is from Ni on the periodic table, the larger the decrease of γ(SF) for the dilute Ni-X alloy, and roughly the γ(SF) of Ni-X decreases with increasing equilibrium volume. In addition, the values of γ(SF) for all Ni-X systems decrease with increasing temperature (except for Ni-Cr at higher Cr content), and the largest decrease is observed for pure Ni. Similar to the case of the shear modulus, the variation of γ(SF) for Ni-X systems due to various alloying elements is traceable from the distribution of (magnetization) charge density: the spherical distribution of charge density around a Ni atom, especially a smaller sphere, results in a lower value of γ(SF) due to the facility of redistribution of charges. Computed stacking fault energies and the related properties are in favorable accord with available experimental and theoretical data. PMID:23172684

  4. Note: A short-pulse high-intensity molecular beam valve based on a piezoelectric stack actuator

    SciTech Connect

    Abeysekera, Chamara; Joalland, Baptiste; Shi, Yuanyuan; Kamasah, Alexander; Oldham, James M.; Suits, Arthur G.

    2014-11-15

    Solenoid and piezoelectric disk valves, which are widely used to generate molecular beam pulses, still suffer from significant restrictions, such as pulse durations typically >50 μs, low repetition rates, and limited gas flows and operational times. Much of this arises owing to the limited forces these actuators can achieve. To overcome these limitations, we have developed a new pulsed valve based on a high-force piezoelectric stack actuator. We show here that operation with pulse durations as low as 20 μs and repetition rates up to 100 Hz can be easily achieved by operating the valve in conjunction with a commercial fast high-voltage switch. We outline our design and demonstrate its performance with molecular beam characterization via velocity map ion imaging.

  5. End-to-end stacking and liquid crystal condensation of 6- to 20-base pair DNA duplexes.

    SciTech Connect

    Nakata, M.; Zanchetta, G.; Chapman, B.D.; Christopher, D.; Jones, D.; Cross, J.O.; Pindak, R.; Bellini, T.; Noel, N.; X-Ray Science Division; Univ. of Colorado; Univ. di Milano; BNL

    2007-11-23

    Short complementary B-form DNA oligomers, 6 to 20 base pairs in length, are found to exhibit nematic and columnar liquid crystal phases, even though such duplexes lack the shape anisotropy required for liquid crystal ordering. Structural study shows that these phases are produced by the end-to-end adhesion and consequent stacking of the duplex oligomers into polydisperse anisotropic rod-shaped aggregates, which can order into liquid crystals. Upon cooling mixed solutions of short DNA oligomers, in which only a small fraction of the DNA present is complementary, the duplex-forming oligomers phase-separate into liquid crystal droplets, leaving the unpaired single strands in isotropic solution. In a chemical environment where oligomer ligation is possible, such ordering and condensation would provide an autocatalytic link whereby complementarity promotes the extended polymerization of complementary oligomers.

  6. A comparative study of AlN and Al2O3 based gate stacks grown by atomic layer deposition on InGaAs

    NASA Astrophysics Data System (ADS)

    Krylov, Igor; Pokroy, Boaz; Ritter, Dan; Eizenberg, Moshe

    2016-02-01

    Thermal activated atomic layer deposited (t) (ALD) and plasma enhanced (p) ALD (PEALD) AlN films were investigated for gate applications of InGaAs based metal-insulator-semiconductor devices and compared to the well-known Al2O3 based system. The roles of post-metallization annealing (PMA) and the pre-deposition treatment (PDT) by either trimethylaluminium (TMA) or NH3 were studied. In contrast to the case of Al2O3, in the case of AlN, the annealing temperature reduced interface states density. In addition, improvement of the AlN film stoichiometry and a related border traps density reduction were observed following PMA. The lowest interface states density (among the investigated gate stacks) was found for PEALD AlN/InGaAs stacks after TMA PDT. At the same time, higher values of the dispersion in accumulation were observed for AlN/InGaAs gate stacks compared to those with Al2O3 dielectric. No indium out-diffusion and the related leakage current degradation due to annealing were observed at the AlN/InGaAs stack. In light of these findings, we conclude that AlN is a promising material for InGaAs based gate stack applications.

  7. Macromolecular differentiation of Golgi stacks in root tips of Arabidopsis and Nicotiana seedlings as visualized in high pressure frozen and freeze-substituted samples

    NASA Technical Reports Server (NTRS)

    Staehelin, L. A.; Giddings, T. H. Jr; Kiss, J. Z.; Sack, F. D.

    1990-01-01

    The plant root tip represents a fascinating model system for studying changes in Golgi stack architecture associated with the developmental progression of meristematic cells to gravity sensing columella cells, and finally to "young" and "old", polysaccharide-slime secreting peripheral cells. To this end we have used high pressure freezing in conjunction with freeze-substitution techniques to follow developmental changes in the macromolecular organization of Golgi stacks in root tips of Arabidopsis and Nicotiana. Due to the much improved structural preservation of all cells under investigation, our electron micrographs reveal both several novel structural features common to all Golgi stacks, as well as characteristic differences in morphology between Golgi stacks of different cell types. Common to all Golgi stacks are clear and discrete differences in staining patterns and width of cis, medial and trans cisternae. Cis cisternae have the widest lumina (approximately 30 nm) and are the least stained. Medial cisternae are narrower (approximately 20 nm) and filled with more darkly staining products. Most trans cisternae possess a completely collapsed lumen in their central domain, giving rise to a 4-6 nm wide dark line in cross-sectional views. Numerous vesicles associated with the cisternal margins carry a non-clathrin type of coat. A trans Golgi network with clathrin coated vesicles is associated with all Golgi stacks except those of old peripheral cells. It is easily distinguished from trans cisternae by its blebbing morphology and staining pattern. The zone of ribosome exclusion includes both the Golgi stack and the trans Golgi network. Intercisternal elements are located exclusively between trans cisternae of columella and peripheral cells, but not meristematic cells. In older peripheral cells only trans cisternae exhibit slime-related staining. Golgi stacks possessing intercisternal elements also contain parallel rows of freeze-fracture particles in their trans

  8. Effect of Base Stacking on the Acid-Base Properties of the Adenine Cation Radical [A•+] in Solution: ESR and DFT Studies

    PubMed Central

    Adhikary, Amitava; Kumar, Anil; Khanduri, Deepti

    2015-01-01

    In this study, the acid–base properties of the adenine cation radical are investigated by means of experiment and theory. Adenine cation radical (A•+) is produced by one-electron oxidation of dAdo and of the stacked DNA-oligomer (dA)6 by Cl2•− in aqueous glass (7.5 M LiCl in H2O and in D2O) and investigated by ESR spectroscopy. Theoretical calculations and deuterium substitution at C8–H and N6–H in dAdo aid in our assignments of structure. We find the pKa value of A•+ in this system to be ca. 8 at 150 K in seeming contradiction to the accepted value of ≤ 1 at ambient temperature. However, upon thermal annealing to ≥160 K, complete deprotonation of A•+ occurs in dAdo in these glassy systems even at pH ca. 3. A•+ found in (dA)6 at 150 K also deprotonates on thermal annealing. The stability of A•+ at 150 K in these systems is attributed to charge delocalization between stacked bases. Theoretical calculations at various levels (DFT B3LYP/6-31G*, MPWB95, and HF-MP2) predict binding energies for the adenine stacked dimer cation radical of 12 to 16 kcal/mol. Further DFT B3LYP/6-31G* calculations predict that, in aqueous solution, monomeric A•+ should deprotonate spontaneously (a predicted pKa of ca. −0.3 for A•+). However, the charge resonance stabilized dimer AA•+ is predicted to result in a significant barrier to deprotonation and a calculated pKa of ca. 7 for the AA•+ dimer which is 7 pH units higher than the monomer. These theoretical and experimental results suggest that A•+ isolated in solution and A•+ in adenine stacks have highly differing acid–base properties resulting from the stabilization induced by hole delocalization within adenine stacks. PMID:18611019

  9. Reversible phospholipid nanogels for deoxyribonucleic acid fragment size determinations up to 1500 base pairs and integrated sample stacking.

    PubMed

    Durney, Brandon C; Bachert, Beth A; Sloane, Hillary S; Lukomski, Slawomir; Landers, James P; Holland, Lisa A

    2015-06-23

    Phospholipid additives are a cost-effective medium to separate deoxyribonucleic acid (DNA) fragments and possess a thermally-responsive viscosity. This provides a mechanism to easily create and replace a highly viscous nanogel in a narrow bore capillary with only a 10°C change in temperature. Preparations composed of dimyristoyl-sn-glycero-3-phosphocholine (DMPC) and 1,2-dihexanoyl-sn-glycero-3-phosphocholine (DHPC) self-assemble, forming structures such as nanodisks and wormlike micelles. Factors that influence the morphology of a particular DMPC-DHPC preparation include the concentration of lipid in solution, the temperature, and the ratio of DMPC and DHPC. It has previously been established that an aqueous solution containing 10% phospholipid with a ratio of [DMPC]/[DHPC]=2.5 separates DNA fragments with nearly single base resolution for DNA fragments up to 500 base pairs in length, but beyond this size the resolution decreases dramatically. A new DMPC-DHPC medium is developed to effectively separate and size DNA fragments up to 1500 base pairs by decreasing the total lipid concentration to 2.5%. A 2.5% phospholipid nanogel generates a resolution of 1% of the DNA fragment size up to 1500 base pairs. This increase in the upper size limit is accomplished using commercially available phospholipids at an even lower material cost than is achieved with the 10% preparation. The separation additive is used to evaluate size markers ranging between 200 and 1500 base pairs in order to distinguish invasive strains of Streptococcus pyogenes and Aspergillus species by harnessing differences in gene sequences of collagen-like proteins in these organisms. For the first time, a reversible stacking gel is integrated in a capillary sieving separation by utilizing the thermally-responsive viscosity of these self-assembled phospholipid preparations. A discontinuous matrix is created that is composed of a cartridge of highly viscous phospholipid assimilated into a separation matrix

  10. Model based examination on influence of stack series connection and pipe diameters on efficiency of vanadium redox flow batteries under consideration of shunt currents

    NASA Astrophysics Data System (ADS)

    König, S.; Suriyah, M. R.; Leibfried, T.

    2015-05-01

    Model based design and optimization of large scale vanadium redox flow batteries can help to decrease system costs and to increase system efficiency. System complexity, e.g. the combination of hydraulic and electric circuits requires a multi-physic modeling approach to cover all dependencies between subsystems. A Matlab/Simulink model is introduced, which covers a variable number of stacks and their hydraulic circuit, as well as the impact of shunt currents. Using analytic approaches that are afterward crosschecked with the developed model, a six-stack, 54 kW/216 kWh system is designed. With the simulation results it is demonstrated how combining stacks to strings and varying pipe diameters affects system efficiency. As cell voltage is comparatively low, connecting stacks in series to strings seems reasonable to facilitate grid connection. It is shown that this significantly lowers system efficiency. Hydraulic circuit design is varied to lower efficiency drop. In total, four different electric designs are equipped with 21 hydraulic design variations to quantify dependencies between electric and hydraulic subsystems. Furthermore, it is examined whether additional shunt current losses through stack series connection can be compensated by more efficient energy conversion systems.

  11. Nonspecific base recognition mediated by water bridges and hydrophobic stacking in ribonuclease I from Escherichia coli

    PubMed Central

    Rodriguez, Sergio Martinez; Panjikar, Santosh; Van Belle, Karolien; Wyns, Lode; Messens, Joris; Loris, Remy

    2008-01-01

    The crystal structure of Escherichia coli ribonuclease I (EcRNase I) reveals an RNase T2-type fold consisting of a conserved core of six β-strands and three α-helices. The overall architecture of the catalytic residues is very similar to the plant and fungal RNase T2 family members, but the perimeter surrounding the active site is characterized by structural elements specific for E. coli. In the structure of EcRNase I in complex with a substrate-mimicking decadeoxynucleotide d(CGCGATCGCG), we observe a cytosine bound in the B2 base binding site and mixed binding of thymine and guanine in the B1 base binding site. The active site residues His55, His133, and Glu129 interact with the phosphodiester linkage only through a set of water molecules. Residues forming the B2 base recognition site are well conserved among bacterial homologs and may generate limited base specificity. On the other hand, the B1 binding cleft acquires true base aspecificity by combining hydrophobic van der Waals contacts at its sides with a water-mediated hydrogen-bonding network at the bottom. This B1 base recognition site is highly variable among bacterial sequences and the observed interactions are unique to EcRNaseI and a few close relatives. PMID:18305191

  12. To Differentiate or Not to Differentiate? Using Internet-Based Technology in the Classroom

    ERIC Educational Resources Information Center

    Cobb, Aries

    2010-01-01

    In the targeted school in the Cleveland Metropolitan School District, teachers focus on differentiating instruction with technology-based software. Differentiated instruction is the chosen teaching strategy over direct instruction because students and teachers alike prefer to work in cooperative groups while using technology in the classroom.…

  13. 1.5 to 1.6 μm pulsed laser diode bars based on epitaxially stacked AlGaInAs/InP heterostructures

    SciTech Connect

    Gorlachuk, P V; Ryaboshtan, Yu L; Ladugin, M A; Padalitsa, A A; Marmalyuk, A A; Kurnosov, V D; Kurnosov, K V; Zhuravleva, O V; Romantsevich, V I; Chernov, R V; Ivanov, A V; Simakov, V A

    2013-09-30

    This paper describes 1.55-μm pulsed laser diode bars based on epitaxially stacked double AlGaInAs/InP heterostructures. The output power of such bars is 1.8 times that of singleheterostructure laser diode bars. We present the key characteristics of the laser sources. (lasers)

  14. Electrochemical cell stack assembly

    DOEpatents

    Jacobson, Craig P.; Visco, Steven J.; De Jonghe, Lutgard C.

    2010-06-22

    Multiple stacks of tubular electrochemical cells having a dense electrolyte disposed between an anode and a cathode preferably deposited as thin films arranged in parallel on stamped conductive interconnect sheets or ferrules. The stack allows one or more electrochemical cell to malfunction without disabling the entire stack. Stack efficiency is enhanced through simplified gas manifolding, gas recycling, reduced operating temperature and improved heat distribution.

  15. New horizon for high performance Mg-based biomaterial with uniform degradation behavior: Formation of stacking faults.

    PubMed

    Zhang, Jinghuai; Xu, Chi; Jing, Yongbin; Lv, Shuhui; Liu, Shujuan; Fang, Daqing; Zhuang, Jinpeng; Zhang, Milin; Wu, Ruizhi

    2015-01-01

    Designing the new microstructure is an effective way to accelerate the biomedical application of magnesium (Mg) alloys. In this study, a novel Mg-8Er-1Zn alloy with profuse nano-spaced basal plane stacking faults (SFs) was prepared by combined processes of direct-chill semi-continuous casting, heat-treatment and hot-extrusion. The formation of SFs made the alloy possess outstanding comprehensive performance as the biodegradable implant material. The ultimate tensile strength (UTS: 318 MPa), tensile yield strength (TYS: 207 MPa) and elongation (21%) of the alloy with SFs were superior to those of most reported degradable Mg-based alloys. This new alloy showed acceptable biotoxicity and degradation rate (0.34 mm/year), and the latter could be further slowed down through optimizing the microstructure. Most amazing of all, the uniquely uniform in vitro/vivo corrosion behavior was obtained due to the formation of SFs. Accordingly we proposed an original corrosion mechanism for the novel Mg alloy with SFs. The present study opens a new horizon for developing new Mg-based biomaterials with highly desirable performances. PMID:26349676

  16. New horizon for high performance Mg-based biomaterial with uniform degradation behavior: Formation of stacking faults

    NASA Astrophysics Data System (ADS)

    Zhang, Jinghuai; Xu, Chi; Jing, Yongbin; Lv, Shuhui; Liu, Shujuan; Fang, Daqing; Zhuang, Jinpeng; Zhang, Milin; Wu, Ruizhi

    2015-09-01

    Designing the new microstructure is an effective way to accelerate the biomedical application of magnesium (Mg) alloys. In this study, a novel Mg-8Er-1Zn alloy with profuse nano-spaced basal plane stacking faults (SFs) was prepared by combined processes of direct-chill semi-continuous casting, heat-treatment and hot-extrusion. The formation of SFs made the alloy possess outstanding comprehensive performance as the biodegradable implant material. The ultimate tensile strength (UTS: 318 MPa), tensile yield strength (TYS: 207 MPa) and elongation (21%) of the alloy with SFs were superior to those of most reported degradable Mg-based alloys. This new alloy showed acceptable biotoxicity and degradation rate (0.34 mm/year), and the latter could be further slowed down through optimizing the microstructure. Most amazing of all, the uniquely uniform in vitro/vivo corrosion behavior was obtained due to the formation of SFs. Accordingly we proposed an original corrosion mechanism for the novel Mg alloy with SFs. The present study opens a new horizon for developing new Mg-based biomaterials with highly desirable performances.

  17. Light-emitting self-assembled peptide nucleic acids exhibit both stacking interactions and Watson-Crick base pairing

    NASA Astrophysics Data System (ADS)

    Berger, Or; Adler-Abramovich, Lihi; Levy-Sakin, Michal; Grunwald, Assaf; Liebes-Peer, Yael; Bachar, Mor; Buzhansky, Ludmila; Mossou, Estelle; Forsyth, V. Trevor; Schwartz, Tal; Ebenstein, Yuval; Frolow, Felix; Shimon, Linda J. W.; Patolsky, Fernando; Gazit, Ehud

    2015-05-01

    The two main branches of bionanotechnology involve the self-assembly of either peptides or DNA. Peptide scaffolds offer chemical versatility, architectural flexibility and structural complexity, but they lack the precise base pairing and molecular recognition available with nucleic acid assemblies. Here, inspired by the ability of aromatic dipeptides to form ordered nanostructures with unique physical properties, we explore the assembly of peptide nucleic acids (PNAs), which are short DNA mimics that have an amide backbone. All 16 combinations of the very short di-PNA building blocks were synthesized and assayed for their ability to self-associate. Only three guanine-containing di-PNAs—CG, GC and GG—could form ordered assemblies, as observed by electron microscopy, and these di-PNAs efficiently assembled into discrete architectures within a few minutes. The X-ray crystal structure of the GC di-PNA showed the occurrence of both stacking interactions and Watson-Crick base pairing. The assemblies were also found to exhibit optical properties including voltage-dependent electroluminescence and wide-range excitation-dependent fluorescence in the visible region.

  18. New horizon for high performance Mg-based biomaterial with uniform degradation behavior: Formation of stacking faults

    PubMed Central

    Zhang, Jinghuai; Xu, Chi; Jing, Yongbin; Lv, Shuhui; Liu, Shujuan; Fang, Daqing; Zhuang, Jinpeng; Zhang, Milin; Wu, Ruizhi

    2015-01-01

    Designing the new microstructure is an effective way to accelerate the biomedical application of magnesium (Mg) alloys. In this study, a novel Mg–8Er–1Zn alloy with profuse nano-spaced basal plane stacking faults (SFs) was prepared by combined processes of direct-chill semi-continuous casting, heat-treatment and hot-extrusion. The formation of SFs made the alloy possess outstanding comprehensive performance as the biodegradable implant material. The ultimate tensile strength (UTS: 318 MPa), tensile yield strength (TYS: 207 MPa) and elongation (21%) of the alloy with SFs were superior to those of most reported degradable Mg-based alloys. This new alloy showed acceptable biotoxicity and degradation rate (0.34 mm/year), and the latter could be further slowed down through optimizing the microstructure. Most amazing of all, the uniquely uniform in vitro/vivo corrosion behavior was obtained due to the formation of SFs. Accordingly we proposed an original corrosion mechanism for the novel Mg alloy with SFs. The present study opens a new horizon for developing new Mg-based biomaterials with highly desirable performances. PMID:26349676

  19. Prediction of temperature profile in MCFC stack

    SciTech Connect

    Lee, Kab Soo; Kim, Hwayong; Hong, Seong-An; Lim, Hee Chun

    1996-12-31

    A simple three dimensional model was developed to simulate the temperature distribution and the performance of various flow types of the MCFC stack. The objective of this study was to understand the complicated phenomena occurring in the MCFC stack and to supply the basic data for optimizing the operating condition of the MCFC stack. Assuming that the stack consists of a number of differential elements which have uniform temperature and gas composition, the model was solved by finite difference method. The performance of this model was demonstrated by comparing the calculated value with experimental data of the 1.5kW class co-flow type MCFC stack operated in KIST. This model can be utilized as a simple diagnostic tool in case of the operational abnormality such as the hot spot which often occurs inside the stack.

  20. Two-dimensional pre-stack reverse time imaging based on tunnel space

    NASA Astrophysics Data System (ADS)

    Cheng, Fei; Liu, Jiangping; Qu, Niannian; Mao, Mao; Zhou, Liming

    2014-05-01

    In order to increase the safety and efficiency in tunnel constructions, there is a need to carry out an effective and precise tunnel prediction method to detect unexpected lithological and structural heterogeneities ahead of tunnel face. Seismic prediction is considered as one correct and efficient method. The assumption, which differs from the reality, taken in most of the current tunnel seismic imaging methods is that the tunnel space is a homogeneous medium with surrounded layers with the same elastic characters. In this paper, taking into account the actual situation of tunnel space, we propose some new tunnel geological models that are closer to the reality using the first-order coupled elastic equations of particle velocity and stress, and high order staggered grid finite-difference algorithm to fulfill numerical simulation of seismic full-wave fields in tunnel space. Then for these synthetic simulated records, we utilize reverse time migration operator based on non-conversion wave equation with decoupled P- and S-waves, and excitation time imaging condition to achieve reliable two dimensional (2D) reverse time migration imaging (RTM) based on tunnel space effectively. Results demonstrate that (1) it is able to achieve synthetic simulation and reverse time migration imaging correctly by using a staggered grid finite-difference (FD) algorithm with second-order accuracy in time and fourth-order accuracy in space, and reverse time operator based on non-conversion wave equation with decoupled P- and S-waves; (2) tunnel-based reverse time migration imaging can effectively suppress mirror artifact occurring in conventional imaging approaches; and (3) as the dip angle of lithological interface decreases, the energy of P wave imaging increases while the energy of S wave imaging decreases when shooting and receiving at the same side of interface, while when the dip angle of interface is 90°, common-source gather with shots near the tunnel face is beneficial to the

  1. Silicon-Based Thermoelectrics: Harvesting Low Quality Heat Using Economically Printed Flexible Nanostructured Stacked Thermoelectric Junctions

    SciTech Connect

    2010-03-01

    Broad Funding Opportunity Announcement Project: UIUC is experimenting with silicon-based materials to develop flexible thermoelectric devices—which convert heat into energy—that can be mass-produced at low cost. A thermoelectric device, which resembles a computer chip, creates electricity when a different temperature is applied to each of its sides. Existing commercial thermoelectric devices contain the element tellurium, which limits production levels because tellurium has become increasingly rare. UIUC is replacing this material with microscopic silicon wires that are considerably cheaper and could be equally effective. Improvements in thermoelectric device production could return enough wasted heat to add up to 23% to our current annual electricity production.

  2. Finding diversity for building one-day ahead Hydrological Ensemble Prediction System based on artificial neural network stacks

    NASA Astrophysics Data System (ADS)

    Brochero, Darwin; Anctil, Francois; Gagné, Christian; López, Karol

    2013-04-01

    In this study, we addressed the application of Artificial Neural Networks (ANN) in the context of Hydrological Ensemble Prediction Systems (HEPS). Such systems have become popular in the past years as a tool to include the forecast uncertainty in the decision making process. HEPS considers fundamentally the uncertainty cascade model [4] for uncertainty representation. Analogously, the machine learning community has proposed models of multiple classifier systems that take into account the variability in datasets, input space, model structures, and parametric configuration [3]. This approach is based primarily on the well-known "no free lunch theorem" [1]. Consequently, we propose a framework based on two separate but complementary topics: data stratification and input variable selection (IVS). Thus, we promote an ANN prediction stack in which each predictor is trained based on input spaces defined by the IVS application on different stratified sub-samples. All this, added to the inherent variability of classical ANN optimization, leads us to our ultimate goal: diversity in the prediction, defined as the complementarity of the individual predictors. The stratification application on the 12 basins used in this study, which originate from the second and third workshop of the MOPEX project [2], shows that the informativeness of the data is far more important than the quantity used for ANN training. Additionally, the input space variability leads to ANN stacks that outperform an ANN stack model trained with 100% of the available information but with a random selection of dataset used in the early stopping method (scenario R100P). The results show that from a deterministic view, the main advantage focuses on the efficient selection of the training information, which is an equally important concept for the calibration of conceptual hydrological models. On the other hand, the diversity achieved is reflected in a substantial improvement in the scores that define the

  3. SiliPET: Design of an ultra-high resolution small animal PET scanner based on stacks of semi-conductor detectors

    NASA Astrophysics Data System (ADS)

    Cesca, N.; Auricchio, N.; Di Domenico, G.; Zavattini, G.; Malaguti, R.; Andritschke, R.; Kanbach, G.; Schopper, F.

    2007-03-01

    We studied with Monte Carlo simulations, using the EGSnrc code, a new scanner for small animal positron emission tomography (PET), based on stacks of double-sided semiconductor detectors. Each stack is composed of planar detectors with dimension 70×60×1 mm 3 and orthogonal strips on both sides with 500 μm pitch to read the two interaction coordinates, the third being the detector number in the stack. Multiple interactions in a stack are discarded. In this way, we achieve a precise determination of the first interaction point of the two 511 keV photons. The reduced dimensions of the scanner also improve the solid angle coverage resulting in a high sensitivity. Preliminary results of scanners based on Si planar detectors are presented and the initial tomographic reconstructions demonstrate very good spatial resolution limited only by the positron range. This suggests that, this is a promising new approach for small animal PET imaging. We are testing some double-sided silicon detectors, equipped with 128 orthogonal p and n strips on opposite sides using VATAGP3 ASIC by IDEAS.

  4. Thermoacoustic Refrigerator's Stack Optimization

    NASA Astrophysics Data System (ADS)

    El-Fawal, Mawahib Hassan; Mohd-Ghazali, Normah; Yaacob, Mohd. Shafik; Darus, Amer Nordin

    2010-06-01

    The standing wave thermoacoustic refrigerator, which uses sound generation to transfer heat, was developed rapidly during the past four decades. It was regarded as a new, promising and environmentally benign alternative to conventional compression vapor refrigerators, although it was not competitive regarding the coefficient of performance (COP) yet. Thus the aim of this paper is to enhance thermoacoustic refrigerator's stack performance through optimization. A computational optimization procedure of thermoacoustic stack design was fully developed. The procedure was designed to achieve optimal coefficient of performance based on most of the design and operating parameters. Cooling load and acoustic power governing equations were set assuming the linear thermoacoustic theory. Lagrange multipliers method was used as an optimization technique tool to solve the governing equations. Numerical analyses results of the developed design procedure are presented. The results showed that the stack design parameters are the most significant parameters for the optimal overall performance. The coefficient of performance obtained increases by about 48.8% from the published experimental optimization methods. The results are in good agreement with past established studies.

  5. On the spline-based wavelet differentiation matrix

    NASA Technical Reports Server (NTRS)

    Jameson, Leland

    1993-01-01

    The differentiation matrix for a spline-based wavelet basis is constructed. Given an n-th order spline basis it is proved that the differentiation matrix is accurate of order 2n + 2 when periodic boundary conditions are assumed. This high accuracy, or superconvergence, is lost when the boundary conditions are no longer periodic. Furthermore, it is shown that spline-based bases generate a class of compact finite difference schemes.

  6. Digital differential confocal microscopy based on spatial shift transformation.

    PubMed

    Liu, J; Wang, Y; Liu, C; Wilson, T; Wang, H; Tan, J

    2014-11-01

    Differential confocal microscopy is a particularly powerful surface profilometry technique in industrial metrology due to its high axial sensitivity and insensitivity to noise. However, the practical implementation of the technique requires the accurate positioning of point detectors in three-dimensions. We describe a simple alternative based on spatial transformation of a through-focus series of images obtained from a homemade beam scanning confocal microscope. This digital differential confocal microscopy approach is described and compared with the traditional Differential confocal microscopy approach. The ease of use of the digital differential confocal microscopy system is illustrated by performing measurements on a 3D standard specimen. PMID:25303106

  7. A low-temperature fabricated gate-stack structure for Ge-based MOSFET with ferromagnetic epitaxial Heusler-alloy/Ge electrodes

    NASA Astrophysics Data System (ADS)

    Fujita, Yuichi; Yamada, Michihiro; Nagatomi, Yuta; Yamamoto, Keisuke; Yamada, Shinya; Sawano, Kentarou; Kanashima, Takeshi; Nakashima, Hiroshi; Hamaya, Kohei

    2016-06-01

    A possible low-temperature fabrication process of a gate-stack for Ge-based spin metal–oxide–semiconductor field-effect transistor (MOSFET) is investigated. First, since we use epitaxial ferromagnetic Heusler alloys on top of the phosphorous doped Ge epilayer as spin injector and detector, we need a dry etching process to form Heusler-alloy/n+-Ge Schottky-tunnel contacts. Next, to remove the Ge epilayers damaged by the dry etching process, the fabricated structures are dipped in a 0.03% diluted H2O2 solution. Finally, Al/SiO2/GeO2/Ge gate-stack structures are fabricated at 300 °C as a top gate-stack structure. As a result, the currents in the Ge-MOSFET fabricated here can be modulated by applying gate voltages even by using the low-temperature formed gate-stack structures. This low-temperature fabrication process can be utilized for operating Ge spin MOSFETs with a top gate electrode.

  8. Nonlinear acoustic impedance of thermoacoustic stack

    NASA Astrophysics Data System (ADS)

    Ge, Huan; Fan, Li; Xiao, Shu-yu; Tao, Sha; Qiu, Mei-chen; Zhang, Shu-yi; Zhang, Hui

    2012-09-01

    In order to optimize the performances of the thermoacoustic refrigerator working with the high sound pressure level, the nonlinear acoustic characteristics of the thermoacoustic stack in the resonant pipe are studied. The acoustic fluid impedance of the stack made of copper mesh and set up in a resonant pipe is measured in the acoustic fields with different intensities. It is found that when the sound pressure level in the pipe increases to a critical value, the resistance of the stack increases nonlinearly with the sound pressure, while the reactance of the stack keeps constant. Based on the experimental results, a theory model is set up to describe the acoustic characteristics of the stack, according to the rigid frame theory and Forchheimmer equation. Furthermore, the influences of the sound pressure level, operating frequency, volume porosity, and length of the stack on the nonlinear impedance of the stack are evaluated.

  9. Stacking interactions and DNA intercalation

    SciTech Connect

    Li, Dr. Shen; Cooper, Valentino R; Thonhauser, Prof. Timo; Lundqvist, Prof. Bengt I.; Langreth, David C.

    2009-01-01

    The relationship between stacking interactions and the intercalation of proflavine and ellipticine within DNA is investigated using a nonempirical van der Waals density functional for the correlation energy. Our results, employing a binary stack model, highlight fundamental, qualitative differences between base-pair base-pair interactions and that of the stacked intercalator base pair system. Most notable result is the paucity of torque which so distinctively defines the Twist of DNA. Surprisingly, this model, when combined with a constraint on the twist of the surrounding base-pair steps to match the observed unwinding of the sugar-phosphate backbone, was sufficient for explaining the experimentally observed proflavine intercalator configuration. Our extensive mapping of the potential energy surface of base-pair intercalator interactions can provide valuable information for future nonempirical studies of DNA intercalation dynamics.

  10. Characterization of cotton gin PM10 emissions based on EPA stack sampling methodologies and particle size distributions

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A project to characterize cotton gin emissions in terms of stack sampling was conducted during the 2008 through 2011 ginning seasons. The impetus behind the project was the urgent need to collect additional cotton gin emissions data to address current regulatory issues. EPA AP-42 emission factors ar...

  11. Preserving Differential Privacy in Degree-Correlation based Graph Generation

    PubMed Central

    Wang, Yue; Wu, Xintao

    2014-01-01

    Enabling accurate analysis of social network data while preserving differential privacy has been challenging since graph features such as cluster coefficient often have high sensitivity, which is different from traditional aggregate functions (e.g., count and sum) on tabular data. In this paper, we study the problem of enforcing edge differential privacy in graph generation. The idea is to enforce differential privacy on graph model parameters learned from the original network and then generate the graphs for releasing using the graph model with the private parameters. In particular, we develop a differential privacy preserving graph generator based on the dK-graph generation model. We first derive from the original graph various parameters (i.e., degree correlations) used in the dK-graph model, then enforce edge differential privacy on the learned parameters, and finally use the dK-graph model with the perturbed parameters to generate graphs. For the 2K-graph model, we enforce the edge differential privacy by calibrating noise based on the smooth sensitivity, rather than the global sensitivity. By doing this, we achieve the strict differential privacy guarantee with smaller magnitude noise. We conduct experiments on four real networks and compare the performance of our private dK-graph models with the stochastic Kronecker graph generation model in terms of utility and privacy tradeoff. Empirical evaluations show the developed private dK-graph generation models significantly outperform the approach based on the stochastic Kronecker generation model. PMID:24723987

  12. Differential Regulatory Analysis Based on Coexpression Network in Cancer Research.

    PubMed

    Li, Junyi; Li, Yi-Xue; Li, Yuan-Yuan

    2016-01-01

    With rapid development of high-throughput techniques and accumulation of big transcriptomic data, plenty of computational methods and algorithms such as differential analysis and network analysis have been proposed to explore genome-wide gene expression characteristics. These efforts are aiming to transform underlying genomic information into valuable knowledges in biological and medical research fields. Recently, tremendous integrative research methods are dedicated to interpret the development and progress of neoplastic diseases, whereas differential regulatory analysis (DRA) based on gene coexpression network (GCN) increasingly plays a robust complement to regular differential expression analysis in revealing regulatory functions of cancer related genes such as evading growth suppressors and resisting cell death. Differential regulatory analysis based on GCN is prospective and shows its essential role in discovering the system properties of carcinogenesis features. Here we briefly review the paradigm of differential regulatory analysis based on GCN. We also focus on the applications of differential regulatory analysis based on GCN in cancer research and point out that DRA is necessary and extraordinary to reveal underlying molecular mechanism in large-scale carcinogenesis studies. PMID:27597964

  13. Differential Regulatory Analysis Based on Coexpression Network in Cancer Research

    PubMed Central

    2016-01-01

    With rapid development of high-throughput techniques and accumulation of big transcriptomic data, plenty of computational methods and algorithms such as differential analysis and network analysis have been proposed to explore genome-wide gene expression characteristics. These efforts are aiming to transform underlying genomic information into valuable knowledges in biological and medical research fields. Recently, tremendous integrative research methods are dedicated to interpret the development and progress of neoplastic diseases, whereas differential regulatory analysis (DRA) based on gene coexpression network (GCN) increasingly plays a robust complement to regular differential expression analysis in revealing regulatory functions of cancer related genes such as evading growth suppressors and resisting cell death. Differential regulatory analysis based on GCN is prospective and shows its essential role in discovering the system properties of carcinogenesis features. Here we briefly review the paradigm of differential regulatory analysis based on GCN. We also focus on the applications of differential regulatory analysis based on GCN in cancer research and point out that DRA is necessary and extraordinary to reveal underlying molecular mechanism in large-scale carcinogenesis studies. PMID:27597964

  14. Fifty years of stacking

    NASA Astrophysics Data System (ADS)

    Rashed, Mohamed

    2014-06-01

    Common-Mid-Point (CMP) stacking is a major process to enhance signal-to-noise ratio in seismic data. Since its appearance fifty years ago, CMP stacking has gone through different phases of prosperity and negligence within the geophysical community. During those times, CMP stacking developed from a simple process of averaging into a sophisticated process that involves complicated mathematics and state-of-the-art computation. This article summarizes the basic principles, assumptions, and violations related to the CMP stacking technique, presents a historical overview on the development stages of CMP stacking, and discusses its future potentiality.

  15. New Improved Fractional Order Differentiator Models Based on Optimized Digital Differentiators

    PubMed Central

    Gupta, Maneesha

    2014-01-01

    Different evolutionary algorithms (EAs), namely, particle swarm optimization (PSO), genetic algorithm (GA), and PSO-GA hybrid optimization, have been used to optimize digital differential operators so that these can be better fitted to exemplify their new improved fractional order differentiator counterparts. First, the paper aims to provide efficient 2nd and 3rd order operators in connection with process of minimization of error fitness function by registering mean, median, and standard deviation values in different random iterations to ascertain the best results among them, using all the abovementioned EAs. Later, these optimized operators are discretized for half differentiator models for utilizing their restored qualities inhibited from their optimization. Simulation results present the comparisons of the proposed half differentiators with the existing and amongst different models based on 2nd and 3rd order optimized operators. Proposed half differentiators have been observed to approximate the ideal half differentiator and also outperform the existing ones reasonably well in complete range of Nyquist frequency. PMID:24688426

  16. Tri-mean-based statistical differential gene expression detection.

    PubMed

    Ji, Zhaohua; Wu, Chunguo; Wang, Yao; Guan, Renchu; Tu, Huawei; Wu, Xiaozhou; Liang, Yanchun

    2012-01-01

    Based on the assumption that only a subset of disease group has differential gene expression, traditional detection of differentially expressed genes is under the constraint that cancer genes are up- or down-regulated in all disease samples compared with normal samples. However, in 2005, Tomlins assumed and discussed the situation that only a subset of disease samples would be activated, which are often referred to as outliers. PMID:23155761

  17. Parallel transport on principal bundles over stacks

    NASA Astrophysics Data System (ADS)

    Collier, Brian; Lerman, Eugene; Wolbert, Seth

    2016-09-01

    In this paper we introduce a notion of parallel transport for principal bundles with connections over differentiable stacks. We show that principal bundles with connections over stacks can be recovered from their parallel transport thereby extending the results of Barrett, Caetano and Picken, and Schreiber and Waldorf from manifolds to stacks. In the process of proving our main result we simplify Schreiber and Waldorf's original definition of a transport functor for principal bundles with connections over manifolds and provide a more direct proof of the correspondence between principal bundles with connections and transport functors.

  18. Stacking with stochastic cooling

    NASA Astrophysics Data System (ADS)

    Caspers, Fritz; Möhl, Dieter

    2004-10-01

    Accumulation of large stacks of antiprotons or ions with the aid of stochastic cooling is more delicate than cooling a constant intensity beam. Basically the difficulty stems from the fact that the optimized gain and the cooling rate are inversely proportional to the number of particles 'seen' by the cooling system. Therefore, to maintain fast stacking, the newly injected batch has to be strongly 'protected' from the Schottky noise of the stack. Vice versa the stack has to be efficiently 'shielded' against the high gain cooling system for the injected beam. In the antiproton accumulators with stacking ratios up to 105 the problem is solved by radial separation of the injection and the stack orbits in a region of large dispersion. An array of several tapered cooling systems with a matched gain profile provides a continuous particle flux towards the high-density stack core. Shielding of the different systems from each other is obtained both through the spatial separation and via the revolution frequencies (filters). In the 'old AA', where the antiproton collection and stacking was done in one single ring, the injected beam was further shielded during cooling by means of a movable shutter. The complexity of these systems is very high. For more modest stacking ratios, one might use azimuthal rather than radial separation of stack and injected beam. Schematically half of the circumference would be used to accept and cool new beam and the remainder to house the stack. Fast gating is then required between the high gain cooling of the injected beam and the low gain stack cooling. RF-gymnastics are used to merge the pre-cooled batch with the stack, to re-create free space for the next injection, and to capture the new batch. This scheme is less demanding for the storage ring lattice, but at the expense of some reduction in stacking rate. The talk reviews the 'radial' separation schemes and also gives some considerations to the 'azimuthal' schemes.

  19. Asymmetric Flexible Supercapacitor Stack

    PubMed Central

    2008-01-01

    Electrical double layer supercapacitor is very significant in the field of electrical energy storage which can be the solution for the current revolution in the electronic devices like mobile phones, camera flashes which needs flexible and miniaturized energy storage device with all non-aqueous components. The multiwalled carbon nanotubes (MWNTs) have been synthesized by catalytic chemical vapor deposition technique over hydrogen decrepitated Mischmetal (Mm) based AB3alloy hydride. The polymer dispersed MWNTs have been obtained by insitu polymerization and the metal oxide/MWNTs were synthesized by sol-gel method. Morphological characterizations of polymer dispersed MWNTs have been carried out using scanning electron microscopy (SEM), transmission electron microscopy (TEM and HRTEM). An assymetric double supercapacitor stack has been fabricated using polymer/MWNTs and metal oxide/MWNTs coated over flexible carbon fabric as electrodes and nafion®membrane as a solid electrolyte. Electrochemical performance of the supercapacitor stack has been investigated using cyclic voltammetry, galvanostatic charge-discharge, and electrochemical impedance spectroscopy.

  20. Ultra-dark graphene stack metamaterials

    NASA Astrophysics Data System (ADS)

    Chugh, Sunny; Man, Mengren; Chen, Zhihong; Webb, Kevin J.

    2015-02-01

    We present a fabrication method to achieve a graphene stack metamaterial, a periodic array of unit cells composed of graphene and a thin insulating spacer, that allows accumulation of the strong absorption from individual graphene sheets and low reflectivity from the stack. The complex sheet conductivity of graphene from experimental data models the measured power transmitted as a function of wavelength and number of periods in the stack. Simulated results based on the extracted graphene complex sheet conductivity for thicker stacks suggest that the graphene stack reflectivity and the per-unit-length absorption can be controlled to exceed the performance of competing light absorbers. Furthermore, the electrical properties of graphene coupled with the stack absorption characteristics provide for applications in optoelectronic devices.

  1. Photogrammetric Technique for Timber Stack Volume Contol

    NASA Astrophysics Data System (ADS)

    Knyaz, V. A.; Maksimov, A. A.

    2014-08-01

    The problem of accurate log volume measurement is a very important, especially in case of seaport volume control where logs are put in a huge stack of hundred meters length and a time for volume control is strongly restricted. Current technology of volume control use manual means such as measuring tape, so the process of measurement is rather inaccurate and time consuming. To estimate the volume of timber stack its frontal area is measured and some control parts of a stack are used for stacking coefficient (wood density in a stack) determination. Non-contact vision based technique is proposed for manual measurements substituting. The developed methods are implemented in portable photogrammetric system for stack parameters measuring and documenting.

  2. Covariance analysis of differential drag-based satellite cluster flight

    NASA Astrophysics Data System (ADS)

    Ben-Yaacov, Ohad; Ivantsov, Anatoly; Gurfil, Pini

    2016-06-01

    One possibility for satellite cluster flight is to control relative distances using differential drag. The idea is to increase or decrease the drag acceleration on each satellite by changing its attitude, and use the resulting small differential acceleration as a controller. The most significant advantage of the differential drag concept is that it enables cluster flight without consuming fuel. However, any drag-based control algorithm must cope with significant aerodynamical and mechanical uncertainties. The goal of the current paper is to develop a method for examination of the differential drag-based cluster flight performance in the presence of noise and uncertainties. In particular, the differential drag control law is examined under measurement noise, drag uncertainties, and initial condition-related uncertainties. The method used for uncertainty quantification is the Linear Covariance Analysis, which enables us to propagate the augmented state and filter covariance without propagating the state itself. Validation using a Monte-Carlo simulation is provided. The results show that all uncertainties have relatively small effect on the inter-satellite distance, even in the long term, which validates the robustness of the used differential drag controller.

  3. A differential augmentation method based on aerostat reference stations

    NASA Astrophysics Data System (ADS)

    Shi, Zhengfa; Gong, Yingkui; Chen, Xiao

    2016-01-01

    Ground based regional augmentation systems is unable to cover regions such as the oceans, mountains and deserts. And its signal is vulnerable of building block. Besides, its positioning precision for high airspace object is limited. To settle such problems, a Differential augmentation method based on troposphere error corrections using aerostat reference stations is proposed. This method utilizes altitudes of mobile station and aerostat station to estimate troposphere delay errors, resulting in troposphere delay difference value between mobile stations and aerostat reference stations. With the aid of satellite navigation information of mobile stations and aerostat station and both troposphere delay difference values, mobile stations' positioning precision is enhanced by eliminating measurement errors (Satellite clock error, Ephemeris error, Ionospheric delay error, Tropospheric delay error) after differential. It is showed by simulation test that aerostat reference station Differential augmentation method based on tropospheric error corrections improves 3D positioning precision of mobile station to within 2m.

  4. Nonlinear dynamics of a stack/cable system subjected to vortex-induced vibration

    SciTech Connect

    Cai, Y.; Chen, S.S.

    1995-12-31

    A model of a stack/wire system, wind-induced vibration of the stack based on an unsteady-flow theory, and nonlinear dynamics of the stack`s heavy elastic suspended cables was developed in this study. The response characteristics of the stack and cables are presented for different conditions. The dominant excitation mechanisms are lock-in resonance of the stack by vortex shedding and parametric resonance of suspended cables by stack motion at their support ends.

  5. Nonlinear dynamics of a stack/cable system subjected to vortex-induced vibration

    SciTech Connect

    Cai, Y.; Chen, S.S.

    1997-08-01

    A model of a stack/wire system, wind-induced vibration of the stack based on an unsteady-flow theory, and nonlinear dynamics of the stack`s heavy elastic suspended cables was developed in this study. The response characteristics of the stack and cables are presented for different conditions. The dominant excitation mechanisms are lock-in resonance of the stack by vortex shedding and parametric resonance of suspended cables by stack motion at their support ends.

  6. On the Daubechies-based wavelet differentiation matrix

    NASA Technical Reports Server (NTRS)

    Jameson, Leland

    1993-01-01

    The differentiation matrix for a Daubechies-based wavelet basis is constructed and superconvergence is proven. That is, it will be proven that under the assumption of periodic boundary conditions that the differentiation matrix is accurate of order 2M, even though the approximation subspace can represent exactly only polynomials up to degree M-1, where M is the number of vanishing moments of the associated wavelet. It is illustrated that Daubechies-based wavelet methods are equivalent to finite difference methods with grid refinement in regions of the domain where small-scale structure is present.

  7. Stacking Global Seismograms Revisited

    NASA Astrophysics Data System (ADS)

    Shearer, P. M.; Buehler, J. S.; Denolle, M.; Fan, W.; Ma, Z.; Mancinelli, N. J.; Matoza, R. S.; Wang, W.; Wang, Y.; Zhan, Z.

    2014-12-01

    Over 20 years ago, stacks of global seismograms produced direct images of the global seismic wavefield highlighting the visibility, frequency content, and polarity of known seismic phases, and also identified a host of new phases associated with reflections and phase conversions from upper-mantle discontinuities. Two different stacking methods proved particularly useful: (1) STA/LTA-filtered stacks that describe the local signal-to-noise characteristics of the major seismic phases. These serve to image the entire wavefield in a uniform way for educational purposes and to show which phases are observed most clearly as a guide to future research. These stacks also resolve SH versus SV timing differences consistent with radial anisotropy. (2) Reference-phase stacks that preserve the polarity, amplitude, and timing of traces with respect to a specified target phase. These show a large number of top-side and bottom-side reflections and phase conversions from the 410- and 660-km discontinuities that create weak phases with a characteristic "railroad track" appearance both preceding and following many of the main seismic phases. Reference-phase stacking can also be used to produce coherent surface-wave stacks at very long periods, which directly show the dispersive character of the surface waves. Here we revisit and update these stacks by exploiting the vastly increased data now available from the IRIS DMC to produce greatly improved wavefield images. We present several examples of the different stacking approaches and point out their various features, including promising targets for future research.

  8. Segregation at stacking faults within the γ′ phase of two Ni-base superalloys following intermediate temperature creep

    SciTech Connect

    Viswanathan, G. B.; Shi, R.; Genc, A.; Vorontsov, V. A.; Kovarik, L.; Rae, C. M. F.; Mills, M. J.

    2015-01-01

    Using state-of-the-art energy dispersive spectroscopy, it has been established for the first time that there exists significant compositional variation (enrichment of Co and Cr and deficiency of Ni and Al) associated with superlattice intrinsic stacking faults created in the ordered γ' precipitates following intermediate temperature deformation of two commercial superalloys. The results indicate that long range diffusion of these elements is intimately involved in the precipitate shearing process and is therefore closely linked to the time-dependent deformation of the alloys.

  9. The role of the substrate on the dispersion in accumulation in III-V compound semiconductor based metal-oxide-semiconductor gate stacks

    SciTech Connect

    Krylov, Igor; Ritter, Dan; Eizenberg, Moshe

    2015-09-07

    Dispersion in accumulation is a widely observed phenomenon in metal-oxide-semiconductor gate stacks based on III-V compound semiconductors. The physical origin of this phenomenon is attributed to border traps located in the dielectric material adjacent to the semiconductor. Here, we study the role of the semiconductor substrate on the electrical quality of the first layers at atomic layer deposited (ALD) dielectrics. For this purpose, either Al{sub 2}O{sub 3} or HfO{sub 2} dielectrics with variable thicknesses were deposited simultaneously on two technology important semiconductors—InGaAs and InP. Significantly larger dispersion was observed in InP based gate stacks compared to those based on InGaAs. The observed difference is attributed to a higher border trap density in dielectrics deposited on InP compared to those deposited on InGaAs. We therefore conclude that the substrate plays an important role in the determination of the electrical quality of the first dielectric monolayers deposited by ALD. An additional observation is that larger dispersion was obtained in HfO{sub 2} based capacitors compared to Al{sub 2}O{sub 3} based capacitors, deposited on the same semiconductor. This phenomenon is attributed to the lower conduction band offset rather than to a higher border trap density.

  10. The role of the substrate on the dispersion in accumulation in III-V compound semiconductor based metal-oxide-semiconductor gate stacks

    NASA Astrophysics Data System (ADS)

    Krylov, Igor; Ritter, Dan; Eizenberg, Moshe

    2015-09-01

    Dispersion in accumulation is a widely observed phenomenon in metal-oxide-semiconductor gate stacks based on III-V compound semiconductors. The physical origin of this phenomenon is attributed to border traps located in the dielectric material adjacent to the semiconductor. Here, we study the role of the semiconductor substrate on the electrical quality of the first layers at atomic layer deposited (ALD) dielectrics. For this purpose, either Al2O3 or HfO2 dielectrics with variable thicknesses were deposited simultaneously on two technology important semiconductors—InGaAs and InP. Significantly larger dispersion was observed in InP based gate stacks compared to those based on InGaAs. The observed difference is attributed to a higher border trap density in dielectrics deposited on InP compared to those deposited on InGaAs. We therefore conclude that the substrate plays an important role in the determination of the electrical quality of the first dielectric monolayers deposited by ALD. An additional observation is that larger dispersion was obtained in HfO2 based capacitors compared to Al2O3 based capacitors, deposited on the same semiconductor. This phenomenon is attributed to the lower conduction band offset rather than to a higher border trap density.

  11. Stack Trace Analysis Tool

    SciTech Connect

    2013-02-19

    STAT is a light weight debugging tool that gathers and merges stack traces from all of the processes in a parallell application. STAT uses the MRNet tree based overlay network to broadcast commands from the tool front-end to the STAT daemons and for the front-end to gather the traces from the STAT daemons. As the traces propagate through the MRNet network tree, they are merged across all tasks to from a single call prefix tree. The call prefix tree can be examined to identify tasks with similar function call patterns and to delineate a small set of equivalence slasses. A representative task from each of these classes can then be fed into a full feature debugger like TotalView for root cause analysis.

  12. Stack Trace Analysis Tool

    SciTech Connect

    2008-01-16

    STAT is a light weight debugging tool that gathers and merges stack traces from all of the processes in a parallel application. STAT uses the MRNet free based overlay network to broadcast commands from the tool front-end to the STAT daemons and for the front-end to gather the traces from the STAT daemons. As the traces propagate through the MRNet network tree, they are merged across all tasks to form a single call prefix tree. The call prefix tree can be examined to identify tasks with similar function call patterns and to delineate a small set of equivalence classes. A representative task from each of these classes can then be fed into a full feature debugger like TotalView for root cause analysis.

  13. The LSST Software Stack

    NASA Astrophysics Data System (ADS)

    Jenness, Timothy; LSST Data Management Team

    2016-01-01

    The Large Synoptic Survey Telescope (LSST) is an 8-m optical ground-based telescope being constructed on Cerro Pachon in Chile. LSST will survey half the sky every few nights in six optical bands. The data will be transferred to the data center in North America and within 60 seconds it will be reduced using difference imaging and an alert list be generated for the community. Additionally, annual data releases will be constructed from all the data during the 10-year mission, producing catalogs and deep co-added images with unprecedented time resolution for such a large region of sky. In the paper we present the current status of the LSST stack including the data processing components, Qserv database and data visualization software, describe how to obtain it, and provide a summary of the development road map.

  14. Stack Trace Analysis Tool

    Energy Science and Technology Software Center (ESTSC)

    2008-01-16

    STAT is a light weight debugging tool that gathers and merges stack traces from all of the processes in a parallel application. STAT uses the MRNet free based overlay network to broadcast commands from the tool front-end to the STAT daemons and for the front-end to gather the traces from the STAT daemons. As the traces propagate through the MRNet network tree, they are merged across all tasks to form a single call prefix tree.more » The call prefix tree can be examined to identify tasks with similar function call patterns and to delineate a small set of equivalence classes. A representative task from each of these classes can then be fed into a full feature debugger like TotalView for root cause analysis.« less

  15. Stack Trace Analysis Tool

    Energy Science and Technology Software Center (ESTSC)

    2013-02-19

    STAT is a light weight debugging tool that gathers and merges stack traces from all of the processes in a parallell application. STAT uses the MRNet tree based overlay network to broadcast commands from the tool front-end to the STAT daemons and for the front-end to gather the traces from the STAT daemons. As the traces propagate through the MRNet network tree, they are merged across all tasks to from a single call prefix tree.more » The call prefix tree can be examined to identify tasks with similar function call patterns and to delineate a small set of equivalence slasses. A representative task from each of these classes can then be fed into a full feature debugger like TotalView for root cause analysis.« less

  16. Solving SAT Problem Based on Hybrid Differential Evolution Algorithm

    NASA Astrophysics Data System (ADS)

    Liu, Kunqi; Zhang, Jingmin; Liu, Gang; Kang, Lishan

    Satisfiability (SAT) problem is an NP-complete problem. Based on the analysis about it, SAT problem is translated equally into an optimization problem on the minimum of objective function. A hybrid differential evolution algorithm is proposed to solve the Satisfiability problem. It makes full use of strong local search capacity of hill-climbing algorithm and strong global search capability of differential evolution algorithm, which makes up their disadvantages, improves the efficiency of algorithm and avoids the stagnation phenomenon. The experiment results show that the hybrid algorithm is efficient in solving SAT problem.

  17. Wind induced vibration of a stack

    SciTech Connect

    Chen, S.S.; Cai, Y.

    1992-12-01

    A stack supported by guy wires at four levels is subjected to large-amplitude oscillations when the wind speed is over 15 m/s. The excitation mechanisms are identified based on scoping calculations, analytical prediction using a finite element code, and observation of the stack/wire response. The stack is determined to be excited by vortex shedding. Once lock-in resonance occurs, the guy wires are excited by the transverse motion of the stack. Large-amplitude oscillations of the guy wires are due to parametric resonance. Several methods are recommended to alleviate vibrational problem for short-term and long-term solutions. A new stack which is modified based on the results of this study is not subjected to any unacceptable oscillations.

  18. Wind induced vibration of a stack

    SciTech Connect

    Chen, S.S.; Cai, Y.

    1992-01-01

    A stack supported by guy wires at four levels is subjected to large-amplitude oscillations when the wind speed is over 15 m/s. The excitation mechanisms are identified based on scoping calculations, analytical prediction using a finite element code, and observation of the stack/wire response. The stack is determined to be excited by vortex shedding. Once lock-in resonance occurs, the guy wires are excited by the transverse motion of the stack. Large-amplitude oscillations of the guy wires are due to parametric resonance. Several methods are recommended to alleviate vibrational problem for short-term and long-term solutions. A new stack which is modified based on the results of this study is not subjected to any unacceptable oscillations.

  19. Stack gas treatment

    DOEpatents

    Reeves, Adam A.

    1977-04-12

    Hot stack gases transfer contained heat to a gravity flow of pebbles treated with a catalyst, cooled stacked gases and a sulfuric acid mist is withdrawn from the unit, and heat picked up by the pebbles is transferred to air for combustion or other process. The sulfuric acid (or sulfur, depending on the catalyst) is withdrawn in a recovery unit.

  20. Self-mixing differential vibrometer based on electronic channel subtraction.

    PubMed

    Donati, Silvano; Norgia, Michele; Giuliani, Guido

    2006-10-01

    An instrument for noncontact measurement of differential vibrations is developed, based on the self-mixing interferometer. As no reference arm is available in the self-mixing configuration, the differential mode is obtained by electronic subtraction of signals from two (nominally equal) vibrometer channels, taking advantage that channels are servo stabilized and thus insensitive to speckle and other sources of amplitude fluctuation. We show that electronic subtraction is nearly as effective as field superposition. Common-mode suppression is 25-30 dB, the dynamic range (amplitude) is in excess of 100 microm, and the minimum measurable (differential) amplitude is 20 nm on a B = 10 kHz bandwidth. The instrument has been used to measure vibrations of two metal samples kept in contact, revealing the hysteresis cycle in the microslip and gross-slip regimes, which are of interest in the study of friction induced vibration damping of gas turbine blades for aircraft applications. PMID:16983412

  1. Silicon Micropore based Electromechanical Transducer to Differentiate Tumor Cells

    NASA Astrophysics Data System (ADS)

    Ali, Waqas; Raza, Muhammad U.; Khanzada, Raja R.; Kim, Young-Tae; Iqbal, Samir M.

    2015-03-01

    Solid-state micropores have been used before to differentiate cancer cells from normal cells using size-based filtering. Tumor cells differ from normal ones not only in size but also in physical properties like elasticity, shape, motility etc. Tumor cells show different physical attributes depending on the stage and type of cancer. We report a micropore based electromechanical transducer that differentiated cancer cells based on their mechanophysical properties. The device was interfaced with a high-speed patch-clamp measurement system that biased the ionic solution across the silicon-based membrane. The bias resulted in the flow of ionic current. Electrical pulses were generated when cells passed through. Different cells depicted characteristic pulses. Translocation profiles of cells that were either small or were more elastic and flexible caused electrical pulses shorter in widths and amplitudes whereas cells with larger size or lesser elasticity/flexibility showed deeper and wider pulses. Three non-small cell lung cancer (NSCLC) cell lines NCI-H1155, A549 and NCI-H460 were successfully differentiated. NCI-H1155, due to their comparatively smaller size, were found quickest in translocating through. The solid-sate micropore based electromechanical transducer could process the whole blood sample of cancer patient without any pre-processing requirements and is ideal for point-of-care applications. Support Acknowledged from NSF through ECCS-1201878.

  2. Flexible, Stretchable, and Rechargeable Fiber-Shaped Zinc-Air Battery Based on Cross-Stacked Carbon Nanotube Sheets.

    PubMed

    Xu, Yifan; Zhang, Ye; Guo, Ziyang; Ren, Jing; Wang, Yonggang; Peng, Huisheng

    2015-12-14

    The fabrication of flexible, stretchable and rechargeable devices with a high energy density is critical for next-generation electronics. Herein, fiber-shaped Zn-air batteries, are realized for the first time by designing aligned, cross-stacked and porous carbon nanotube sheets simultaneously that behave as a gas diffusion layer, a catalyst layer, and a current collector. The combined remarkable electronic and mechanical properties of the aligned carbon nanotube sheets endow good electrochemical properties. They display excellent discharge and charge performances at a high current density of 2 A g(-1) . They are also flexible and stretchable, which is particularly promising to power portable and wearable electronic devices. PMID:26514937

  3. Differentiation, Outcomes, Transparency, and Value-based Insurance Design.

    PubMed

    Fine, Stuart H

    2015-07-01

    Practitioners in the surgical and procedural specialties must prepare to differentiate themselves and the performance of their care delivery teams through the use of substantive, objective metrics along with the provision of service guarantees. As purchasers of surgical and procedural services move toward outcomes-focused value-based insurance design (VBID) and purchasing, practitioners must move well beyond branding and process measure-focused "Value Based Purchasing" initiatives and be prepared to compete with transparency- not just regionally, but nationally-based upon objectively established outcomes metrics. PMID:26079839

  4. The electronic structure of the four nucleotide bases in DNA, of their stacks, and of their homopolynucleotides in the absence and presence of water

    NASA Astrophysics Data System (ADS)

    Ladik, János; Bende, Attila; Bogár, Ferenc

    2008-03-01

    Using the ab initio Hartree-Fock crystal orbital method in its linear combination of atomic orbital form, the energy band structure of the four homo-DNA-base stacks and those of poly(adenilic acid), polythymidine, and polycytidine were calculated both in the absence and presence of their surrounding water molecules. For these computations Clementi's double ζ basis set was applied. To facilitate the interpretation of the results, the calculations were supplemented by the calculations of the six narrow bands above the conduction band of poly(guanilic acid) with water. Further, the sugar-phosphate chain as well as the water structures around poly(adenilic acid) and polythymidine, respectively, were computed. Three important features have emerged from these calculations. (1) The nonbase-type or water-type bands in the fundamental gap are all close to the corresponding conduction bands. (2) The very broad conduction band (1.70eV) of the guanine stack is split off to seven narrow bands in the case of poly(guanilic acid) (both without and with water) showing that in the energy range of the originally guanine-stack-type conduction band, states belonging to the sugar, to PO4-, to Na+, and to water mix with the guanine-type states. (3) It is apparent that at the homopolynucleotides with water in three cases the valence bands are very similar (polycytidine, because it has a very narrow valence band, does not fall into this category). We have supplemented these calculations by the computation of correlation effects on the band structures of the base stacks by solving the inverse Dyson equation in its diagonal approximation taken for the self-energy the MP2 many body perturbation theory expression. In all cases the too large fundamental gap decreased by 2-3eV. In most cases the widths of the valence and conduction bands, respectively, decreased (but not in all cases). This unusual behavior is most probably due to the rather large complexity of the systems. From all this

  5. Pressure-Induced Phase Transitions in Ammonium Squarate: A Supramolecular Structure Based on Hydrogen-Bonding and [pi]-Stacking Interactions

    SciTech Connect

    Li, Shourui; Wang, Kai; Zhou, Mi; Li, Qian; Liu, Bingbing; Zou, Guangtian; Zou, Bo

    2012-02-06

    We report the results of high-pressure Raman and X-ray diffraction measurements performed on ammonium squarate ((NH{sub 4}){sub 2}C{sub 4}O{sub 4}, AS), a representative supramolecular architecture based on hydrogen bonding and {pi}-stacking interactions, at various pressures up to 19 GPa. Two phase transitions at 2.7 GPa and in the pressure range of 11.1-13.6 GPa were observed. Both Raman and XRD results provide convincing evidence for these two phase transitions. The first phase transition is attributed to the rearrangements of hydrogen-bonding networks, resulting in the symmetry transformation from P2{sub 1}/c to P1. The second one, which is identified as an order-disorder phase transition, arises from significant modifications of squarate rings and random orientations of NH{sub 4}{sup +} cations. The cooperative effects between hydrogen-bonding and {pi}-stacking interactions, as well as mechanisms for the phase transitions, are discussed by virtue of the local structure of AS.

  6. PAM stack test utility

    Energy Science and Technology Software Center (ESTSC)

    2007-08-22

    The pamtest utility calls the normal PAM hooks using a service and username supplied on the command line. This allows an administratory to test any one of many configured PAM stacks as any existing user on the machine.

  7. D0 Vent Stacks

    SciTech Connect

    Fuerst, J.D.; /Fermilab

    1988-01-22

    There are two nitrogen/argon exhaust headers in the D0 cryogenic piping system, one for the liquid argon dewar and another for the three argon calorimeters. These headers serve two functions, venting both nitrogen exhaust from the cooling loops and cold argon gas should any argon vessel blow a relief. These headers are vacuum jacketed until they exit the building. At that point, uninsulated exhaust stacks direct the flow into the atmosphere. This note deals with the these stacks.

  8. An ordinary differential equation based solution path algorithm.

    PubMed

    Wu, Yichao

    2011-01-01

    Efron, Hastie, Johnstone and Tibshirani (2004) proposed Least Angle Regression (LAR), a solution path algorithm for the least squares regression. They pointed out that a slight modification of the LAR gives the LASSO (Tibshirani, 1996) solution path. However it is largely unknown how to extend this solution path algorithm to models beyond the least squares regression. In this work, we propose an extension of the LAR for generalized linear models and the quasi-likelihood model by showing that the corresponding solution path is piecewise given by solutions of ordinary differential equation systems. Our contribution is twofold. First, we provide a theoretical understanding on how the corresponding solution path propagates. Second, we propose an ordinary differential equation based algorithm to obtain the whole solution path. PMID:21532936

  9. Differential equation based method for accurate approximations in optimization

    NASA Technical Reports Server (NTRS)

    Pritchard, Jocelyn I.; Adelman, Howard M.

    1990-01-01

    A method to efficiently and accurately approximate the effect of design changes on structural response is described. The key to this method is to interpret sensitivity equations as differential equations that may be solved explicitly for closed form approximations, hence, the method is denoted the Differential Equation Based (DEB) method. Approximations were developed for vibration frequencies, mode shapes and static displacements. The DEB approximation method was applied to a cantilever beam and results compared with the commonly-used linear Taylor series approximations and exact solutions. The test calculations involved perturbing the height, width, cross-sectional area, tip mass, and bending inertia of the beam. The DEB method proved to be very accurate, and in most cases, was more accurate than the linear Taylor series approximation. The method is applicable to simultaneous perturbation of several design variables. Also, the approximations may be used to calculate other system response quantities. For example, the approximations for displacements are used to approximate bending stresses.

  10. PRECISION COSMOGRAPHY WITH STACKED VOIDS

    SciTech Connect

    Lavaux, Guilhem; Wandelt, Benjamin D.

    2012-08-01

    We present a purely geometrical method for probing the expansion history of the universe from the observation of the shape of stacked voids in spectroscopic redshift surveys. Our method is an Alcock-Paczynski (AP) test based on the average sphericity of voids posited on the local isotropy of the universe. It works by comparing the temporal extent of cosmic voids along the line of sight with their angular, spatial extent. We describe the algorithm that we use to detect and stack voids in redshift shells on the light cone and test it on mock light cones produced from N-body simulations. We establish a robust statistical model for estimating the average stretching of voids in redshift space and quantify the contamination by peculiar velocities. Finally, assuming that the void statistics that we derive from N-body simulations is preserved when considering galaxy surveys, we assess the capability of this approach to constrain dark energy parameters. We report this assessment in terms of the figure of merit (FoM) of the dark energy task force and in particular of the proposed Euclid mission which is particularly suited for this technique since it is a spectroscopic survey. The FoM due to stacked voids from the Euclid wide survey may double that of all other dark energy probes derived from Euclid data alone (combined with Planck priors). In particular, voids seem to outperform baryon acoustic oscillations by an order of magnitude. This result is consistent with simple estimates based on mode counting. The AP test based on stacked voids may be a significant addition to the portfolio of major dark energy probes and its potentialities must be studied in detail.

  11. Late Holocene (<3000 years) paleoearthquakes of the southern Alpine Fault and Fiordland subduction zone, New Zealand, based on stacked turbidites

    NASA Astrophysics Data System (ADS)

    Neil, H.; Barnes, P. M.; Bostock, H. C.; Strachan, L.; Gosling, M.

    2012-12-01

    Turbidite records obtained from seafloor sediment cores in zones of seismically active plate boundary deformation can be used to infer the precise ages and return time of strong ground-shaking earthquakes, and in some cases the rupture extents of particular faults that have experienced earthquakes. We present results of a study of paleo-earthquakes beneath the offshore Fiordland margin, New Zealand, where strong ground shaking is associated largely with strike-slip earthquakes on the southern Alpine Fault and thrust earthquakes on the Fiordland subduction zone. We document late Holocene (<3 ka) earthquake-triggered turbidites over a 65 km length of the margin, focussing on three cores from near-shore strike-slip basins along the Alpine Fault. Analysis including physical property logging, x-radiography, grainsize, carbonate, mineralogy, and foraminifera composition, demonstrate that the cores comprise a succession of 8-15, variably-graded sand to silt turbidites, that are stacked with essentially no intervening hemipelagite. Whilst radiocarbon dating of foraminifera and analysis of 210Pb radionuclide activity constrain sediment source ages, and not direct event ages, the favourable situation in which the submarine source regions of the deposits have been largely evacuated during earthquakes and subsequently re-nourished between events, has facilitated age modelling via an unconventional application of the OxCal Sequence code. The data indicate a mean earthquake recurrence ranging from about 370 years at the northern site off George Sound, to about 140-150 years at the two sites further south. The northern data are in reasonable agreement with recently published recurrence data from the onshore section of the Alpine Fault in south Westland, suggesting that this site may represent largely an Alpine Fault record. In contrast, the significantly shorter recurrence interval at the two southern sites is interpreted to reflect a mixed Alpine Fault and subduction earthquake

  12. Differential geometry based solvation model I: Eulerian formulation.

    PubMed

    Chen, Zhan; Baker, Nathan A; Wei, G W

    2010-11-01

    This paper presents a differential geometry based model for the analysis and computation of the equilibrium property of solvation. Differential geometry theory of surfaces is utilized to define and construct smooth interfaces with good stability and differentiability for use in characterizing the solvent-solute boundaries and in generating continuous dielectric functions across the computational domain. A total free energy functional is constructed to couple polar and nonpolar contributions to the salvation process. Geometric measure theory is employed to rigorously convert a Lagrangian formulation of the surface energy into an Eulerian formulation so as to bring all energy terms into an equal footing. By minimizing the total free energy functional, we derive coupled generalized Poisson-Boltzmann equation (GPBE) and generalized geometric flow equation (GGFE) for the electrostatic potential and the construction of realistic solvent-solute boundaries, respectively. By solving the coupled GPBE and GGFE, we obtain the electrostatic potential, the solvent-solute boundary profile, and the smooth dielectric function, and thereby improve the accuracy and stability of implicit solvation calculations. We also design efficient second order numerical schemes for the solution of the GPBE and GGFE. Matrix resulted from the discretization of the GPBE is accelerated with appropriate preconditioners. An alternative direct implicit (ADI) scheme is designed to improve the stability of solving the GGFE. Two iterative approaches are designed to solve the coupled system of nonlinear partial differential equations. Extensive numerical experiments are designed to validate the present theoretical model, test computational methods, and optimize numerical algorithms. Example solvation analysis of both small compounds and proteins are carried out to further demonstrate the accuracy, stability, efficiency and robustness of the present new model and numerical approaches. Comparison is given to

  13. Differentiating between rights-based and relational ethical approaches.

    PubMed

    Trobec, Irena; Herbst, Majda; Zvanut, Bostjan

    2009-05-01

    When forced treatment in mental health care is under consideration, two approaches guide clinicians in their actions: the dominant rights-based approach and the relational ethical approach. We hypothesized that nurses with bachelor's degrees differentiate better between the two approaches than nurses without a degree. To test this hypothesis a survey was performed in major Slovenian health institutions. We found that nurses emphasize the importance of ethics and personal values, but 55.4% of all the nurse participants confused the two approaches. The results confirmed our hypothesis and indicate the importance of nurses' formal education, especially when caring for patients with mental illness. PMID:19372123

  14. Modification of species-based differential evolution for multimodal optimization

    NASA Astrophysics Data System (ADS)

    Idrus, Said Iskandar Al; Syahputra, Hermawan; Firdaus, Muliawan

    2015-12-01

    At this time optimization has an important role in various fields as well as between other operational research, industry, finance and management. Optimization problem is the problem of maximizing or minimizing a function of one variable or many variables, which include unimodal and multimodal functions. Differential Evolution (DE), is a random search technique using vectors as an alternative solution in the search for the optimum. To localize all local maximum and minimum on multimodal function, this function can be divided into several domain of fitness using niching method. Species-based niching method is one of method that build sub-populations or species in the domain functions. This paper describes the modification of species-based previously to reduce the computational complexity and run more efficiently. The results of the test functions show species-based modifications able to locate all the local optima in once run the program.

  15. Hard X-ray photoemission experiments on novel Ge-based metal gate/high-k stacks

    NASA Astrophysics Data System (ADS)

    Rubio-Zuazo, J.; Martinez, E.; Batude, P.; Clavelier, L.; Soria, F.; Chabli, A.; Castro, G. R.

    2007-09-01

    The scaling of CMOS devices makes mandatory the study of new materials to overcome the physical limitations of the Si technology. Germanium is a good candidate to replace silicon for the channel to improve the carrier mobility. High-K dielectrics such as HfO2 are investigated to replace the gate oxide (SiO2) to decrease both leakage currents and EOT. For the gate electrode, it is also crucial to move from poly-silicon to a metal gate like TiN to adjust work function and to suppress poly-depletion in order to decrease EOT. However, to reach optimal device performances, both the Ge/high-K and high-K/TiN interfaces need to be optimized. In order to passive and prevent Ge oxidation we have deposited a very thin Si interlayer prior to the high-k growth. A thin Si layer (Si capping) is epitaxially grown on Ge and then partially oxidized before high-k deposition. The exact control of the Si capping layer is of major importance. It must be enough thick to prevent germanium oxidation when the partial oxidation of Si is realized and as low as possible in order to keep the benefit of the better transport properties in germanium. In this contribution, we present non-destructive chemical and concentration profile of both critical buried interfaces by mean of Hard X-ray Photoelectron Spectroscopy (HAXPES) of a Ge/Si/SiO2/HfO2/TiN stack, with thickness of 2500, 0.9, 0.5, 4 and 4 nm, respectively. Experiments are performed at the SpLine HAXPES station of the ESRF equipped with a novel photoemission set-up in combination with surface X-ray diffraction (SXRD). The profiles obtained clearly show that the Si interlayer prevents the Ge oxidation and the presence of a new Hf state which is related to an interface chemical shift. Our results demonstrate the excellent capability of HAXPES to study buried interfaces.

  16. Cosmic ray test of INO RPC stack

    NASA Astrophysics Data System (ADS)

    Bhuyan, M.; Datar, V. M.; Kalmani, S. D.; Lahamge, S. M.; Mondal, N. K.; Nagaraj, P.; Pal, S.; Reddy, L. V.; Redij, A.; Samuel, D.; Saraf, M. N.; Satyanarayana, B.; Shinde, R. R.; Verma, P.

    2012-01-01

    The India-based Neutrino Observatory (INO) collaboration is planning to build a 50 kt magnetised iron calorimeter (ICAL) detector using glass Resistive Plate Chambers (RPCs) as active detector elements. A stack of 12 such glass RPCs of 1 m ×1 m in area is tracking cosmic ray muons for over three years. In this paper, we will review the constructional aspects of the stack and discuss the performance of the RPCs using this cosmic ray data.

  17. Barrier RF stacking

    SciTech Connect

    Chou, W.; Wildman, D.; Zheng, H.; Takagi, A.; /KEK, Tsukuba

    2004-12-01

    A novel wideband RF system, nicknamed the barrier RF, has been designed, fabricated and installed in the Fermilab Main Injector. The cavity is made of seven Finemet cores, and the modulator made of two bipolar high-voltage fast solid-state switches. The system can deliver {+-}7 kV square pulses at 90 kHz. The main application is to stack two proton batches injected from the Booster and squeeze them into the size of one so that the bunch intensity can be doubled. High intensity beams have been successfully stacked and accelerated to 120 GeV with small losses. The problem of large longitudinal emittance growth is the focus of the present study. An upgraded system with two barrier RF cavities for continuous stacking is under construction. This work is part of the US-Japan collaborative agreement.

  18. Barrier RF Stacking

    SciTech Connect

    Chou, W.; Wildman, D.; Zheng, H.; Takagi, A.

    2005-06-08

    A novel wideband RF system, nicknamed the barrier RF, has been designed, fabricated and installed in the Fermilab Main Injector. The cavity is made of seven Finemet cores, and the modulator made of two bipolar high-voltage fast solid-state switches. The system can deliver {+-}7 kV square pulses at 90 kHz. The main application is to stack two proton batches injected from the Booster and squeeze them into the size of one so that the bunch intensity can be doubled. High intensity beams have been successfully stacked and accelerated to 120 GeV with small losses. The problem of large longitudinal emittance growth is the focus of the present study. An upgraded system with two barrier RF cavities for continuous stacking is under construction. This work is part of the US-Japan collaborative agreement.

  19. Barrier RF Stacking

    NASA Astrophysics Data System (ADS)

    Chou, W.; Wildman, D.; Zheng, H.; Takagi, A.

    2005-06-01

    A novel wideband RF system, nicknamed the barrier RF, has been designed, fabricated and installed in the Fermilab Main Injector. The cavity is made of seven Finemet cores, and the modulator made of two bipolar high-voltage fast solid-state switches. The system can deliver ±7 kV square pulses at 90 kHz. The main application is to stack two proton batches injected from the Booster and squeeze them into the size of one so that the bunch intensity can be doubled. High intensity beams have been successfully stacked and accelerated to 120 GeV with small losses. The problem of large longitudinal emittance growth is the focus of the present study. An upgraded system with two barrier RF cavities for continuous stacking is under construction. This work is part of the US-Japan collaborative agreement.

  20. Stack filter classifiers

    SciTech Connect

    Porter, Reid B; Hush, Don

    2009-01-01

    Just as linear models generalize the sample mean and weighted average, weighted order statistic models generalize the sample median and weighted median. This analogy can be continued informally to generalized additive modeels in the case of the mean, and Stack Filters in the case of the median. Both of these model classes have been extensively studied for signal and image processing but it is surprising to find that for pattern classification, their treatment has been significantly one sided. Generalized additive models are now a major tool in pattern classification and many different learning algorithms have been developed to fit model parameters to finite data. However Stack Filters remain largely confined to signal and image processing and learning algorithms for classification are yet to be seen. This paper is a step towards Stack Filter Classifiers and it shows that the approach is interesting from both a theoretical and a practical perspective.

  1. Parameter optimization in differential geometry based solvation models.

    PubMed

    Wang, Bao; Wei, G W

    2015-10-01

    Differential geometry (DG) based solvation models are a new class of variational implicit solvent approaches that are able to avoid unphysical solvent-solute boundary definitions and associated geometric singularities, and dynamically couple polar and non-polar interactions in a self-consistent framework. Our earlier study indicates that DG based non-polar solvation model outperforms other methods in non-polar solvation energy predictions. However, the DG based full solvation model has not shown its superiority in solvation analysis, due to its difficulty in parametrization, which must ensure the stability of the solution of strongly coupled nonlinear Laplace-Beltrami and Poisson-Boltzmann equations. In this work, we introduce new parameter learning algorithms based on perturbation and convex optimization theories to stabilize the numerical solution and thus achieve an optimal parametrization of the DG based solvation models. An interesting feature of the present DG based solvation model is that it provides accurate solvation free energy predictions for both polar and non-polar molecules in a unified formulation. Extensive numerical experiment demonstrates that the present DG based solvation model delivers some of the most accurate predictions of the solvation free energies for a large number of molecules. PMID:26450304

  2. Nonlinear dynamics of a stack/cable system

    SciTech Connect

    Cai, Y.; Chen, S.S.

    1995-07-01

    In this study, we developed a coupled model of wind-induced vibration of a stack, based on an unsteady-flow theory and nonlinear dynamics of the stack`s heavy elastic suspended cables. Numerical analysis was performed to identify excitation mechanisms. The stack was found to be excited by vortex shedding. Once lock-in resonance occurred, the cables were excited by the transverse motion of the stack. Large-amplitude oscillations of the cables were due to parametric resonance. Appropriate techniques have been proposed to alleviate the vibration problem.

  3. Differential alkylation-based redox proteomics – Lessons learnt

    PubMed Central

    Wojdyla, Katarzyna; Rogowska-Wrzesinska, Adelina

    2015-01-01

    Cysteine is one of the most reactive amino acids. This is due to the electronegativity of sulphur atom in the side chain of thiolate group. It results in cysteine being present in several distinct redox forms inside the cell. Amongst these, reversible oxidations, S-nitrosylation and S-sulfenylation are crucial mediators of intracellular redox signalling, with known associations to health and disease. Study of their functionalities has intensified thanks to the development of various analytical strategies, with particular contribution from differential alkylation-based proteomics methods. Presented here is a critical evaluation of differential alkylation-based strategies for the analysis of S-nitrosylation and S-sulfenylation. The aim is to assess the current status and to provide insights for future directions in the dynamically evolving field of redox proteomics. To achieve that we collected 35 original research articles published since 2010 and analysed them considering the following parameters, (i) resolution of modification site, (ii) quantitative information, including correction of modification levels by protein abundance changes and determination of modification site occupancy, (iii) throughput, including the amount of starting material required for analysis. The results of this meta-analysis are the core of this review, complemented by issues related to biological models and sample preparation in redox proteomics, including conditions for free thiol blocking and labelling of target cysteine oxoforms. PMID:26282677

  4. Gender Differentiated Preferences for a Community-Based Conservation Initiative

    PubMed Central

    Keane, Aidan; Gurd, Heather; Kaelo, Dickson; Said, Mohammed Y.; de Leeuw, Jan; Rowcliffe, J. Marcus; Homewood, Katherine

    2016-01-01

    Community-based conservation (CBC) aims to benefit local people as well as to achieve conservation goals, but has been criticised for taking a simplistic view of “community” and failing to recognise differences in the preferences and motivations of community members. We explore this heterogeneity in the context of Kenya’s conservancies, focussing on the livelihood preferences of men and women living adjacent to the Maasai Mara National Reserve. Using a discrete choice experiment we quantify the preferences of local community members for key components of their livelihoods and conservancy design, differentiating between men and women and existing conservancy members and non-members. While Maasai preference for pastoralism remains strong, non-livestock-based livelihood activities are also highly valued and there was substantial differentiation in preferences between individuals. Involvement with conservancies was generally perceived to be positive, but only if households were able to retain some land for other purposes. Women placed greater value on conservancy membership, but substantially less value on wage income, while existing conservancy members valued both conservancy membership and livestock more highly than did non-members. Our findings suggest that conservancies can make a positive contribution to livelihoods, but care must be taken to ensure that they do not unintentionally disadvantage any groups. We argue that conservation should pay greater attention to individual-level differences in preferences when designing interventions in order to achieve fairer and more sustainable outcomes for members of local communities. PMID:27022918

  5. Differential alkylation-based redox proteomics--Lessons learnt.

    PubMed

    Wojdyla, Katarzyna; Rogowska-Wrzesinska, Adelina

    2015-12-01

    Cysteine is one of the most reactive amino acids. This is due to the electronegativity of sulphur atom in the side chain of thiolate group. It results in cysteine being present in several distinct redox forms inside the cell. Amongst these, reversible oxidations, S-nitrosylation and S-sulfenylation are crucial mediators of intracellular redox signalling, with known associations to health and disease. Study of their functionalities has intensified thanks to the development of various analytical strategies, with particular contribution from differential alkylation-based proteomics methods. Presented here is a critical evaluation of differential alkylation-based strategies for the analysis of S-nitrosylation and S-sulfenylation. The aim is to assess the current status and to provide insights for future directions in the dynamically evolving field of redox proteomics. To achieve that we collected 35 original research articles published since 2010 and analysed them considering the following parameters, (i) resolution of modification site, (ii) quantitative information, including correction of modification levels by protein abundance changes and determination of modification site occupancy, (iii) throughput, including the amount of starting material required for analysis. The results of this meta-analysis are the core of this review, complemented by issues related to biological models and sample preparation in redox proteomics, including conditions for free thiol blocking and labelling of target cysteine oxoforms. PMID:26282677

  6. Gender Differentiated Preferences for a Community-Based Conservation Initiative.

    PubMed

    Keane, Aidan; Gurd, Heather; Kaelo, Dickson; Said, Mohammed Y; de Leeuw, Jan; Rowcliffe, J Marcus; Homewood, Katherine

    2016-01-01

    Community-based conservation (CBC) aims to benefit local people as well as to achieve conservation goals, but has been criticised for taking a simplistic view of "community" and failing to recognise differences in the preferences and motivations of community members. We explore this heterogeneity in the context of Kenya's conservancies, focussing on the livelihood preferences of men and women living adjacent to the Maasai Mara National Reserve. Using a discrete choice experiment we quantify the preferences of local community members for key components of their livelihoods and conservancy design, differentiating between men and women and existing conservancy members and non-members. While Maasai preference for pastoralism remains strong, non-livestock-based livelihood activities are also highly valued and there was substantial differentiation in preferences between individuals. Involvement with conservancies was generally perceived to be positive, but only if households were able to retain some land for other purposes. Women placed greater value on conservancy membership, but substantially less value on wage income, while existing conservancy members valued both conservancy membership and livestock more highly than did non-members. Our findings suggest that conservancies can make a positive contribution to livelihoods, but care must be taken to ensure that they do not unintentionally disadvantage any groups. We argue that conservation should pay greater attention to individual-level differences in preferences when designing interventions in order to achieve fairer and more sustainable outcomes for members of local communities. PMID:27022918

  7. An Enhanced Differential Evolution Algorithm Based on Multiple Mutation Strategies

    PubMed Central

    Xiang, Wan-li; Meng, Xue-lei; An, Mei-qing; Li, Yin-zhen; Gao, Ming-xia

    2015-01-01

    Differential evolution algorithm is a simple yet efficient metaheuristic for global optimization over continuous spaces. However, there is a shortcoming of premature convergence in standard DE, especially in DE/best/1/bin. In order to take advantage of direction guidance information of the best individual of DE/best/1/bin and avoid getting into local trap, based on multiple mutation strategies, an enhanced differential evolution algorithm, named EDE, is proposed in this paper. In the EDE algorithm, an initialization technique, opposition-based learning initialization for improving the initial solution quality, and a new combined mutation strategy composed of DE/current/1/bin together with DE/pbest/bin/1 for the sake of accelerating standard DE and preventing DE from clustering around the global best individual, as well as a perturbation scheme for further avoiding premature convergence, are integrated. In addition, we also introduce two linear time-varying functions, which are used to decide which solution search equation is chosen at the phases of mutation and perturbation, respectively. Experimental results tested on twenty-five benchmark functions show that EDE is far better than the standard DE. In further comparisons, EDE is compared with other five state-of-the-art approaches and related results show that EDE is still superior to or at least equal to these methods on most of benchmark functions. PMID:26609304

  8. Laser pulse stacking method

    DOEpatents

    Moses, Edward I.

    1992-01-01

    A laser pulse stacking method is disclosed. A problem with the prior art has been the generation of a series of laser beam pulses where the outer and inner regions of the beams are generated so as to form radially non-synchronous pulses. Such pulses thus have a non-uniform cross-sectional area with respect to the outer and inner edges of the pulses. The present invention provides a solution by combining the temporally non-uniform pulses in a stacking effect to thus provide a more uniform temporal synchronism over the beam diameter.

  9. Laser pulse stacking method

    DOEpatents

    Moses, E.I.

    1992-12-01

    A laser pulse stacking method is disclosed. A problem with the prior art has been the generation of a series of laser beam pulses where the outer and inner regions of the beams are generated so as to form radially non-synchronous pulses. Such pulses thus have a non-uniform cross-sectional area with respect to the outer and inner edges of the pulses. The present invention provides a solution by combining the temporally non-uniform pulses in a stacking effect to thus provide a more uniform temporal synchronism over the beam diameter. 2 figs.

  10. Transcriptome-Based Differentiation of Closely-Related Miscanthus Lines

    SciTech Connect

    Chouvarine, Philippe; Cooksey, Amanda M.; McCarthy, Fiona M.; Ray, David A.; Baldwin, Brian S.; Burgess, Shane C.; Peterson, Daniel G.

    2012-01-10

    Distinguishing between individuals is critical to those conducting animal/plant breeding, food safety/quality research, diagnostic and clinical testing, and evolutionary biology studies. Classical genetic identification studies are based on marker polymorphisms, but polymorphism-based techniques are time and labor intensive and often cannot distinguish between closely related individuals. Illumina sequencing technologies provide the detailed sequence data required for rapid and efficient differentiation of related species, lines/cultivars, and individuals in a cost-effective manner. Here we describe the use of Illumina high-throughput exome sequencing, coupled with SNP mapping, as a rapid means of distinguishing between related cultivars of the lignocellulosic bioenergy crop giant miscanthus (Miscanthus6giganteus). We provide the first exome sequence database for Miscanthus species complete with Gene Ontology (GO) functional annotations."

  11. Transcriptome-Based Differentiation of Closely-Related Miscanthus Lines

    DOE PAGESBeta

    Chouvarine, Philippe; Cooksey, Amanda M.; McCarthy, Fiona M.; Ray, David A.; Baldwin, Brian S.; Burgess, Shane C.; Peterson, Daniel G.

    2012-01-10

    Distinguishing between individuals is critical to those conducting animal/plant breeding, food safety/quality research, diagnostic and clinical testing, and evolutionary biology studies. Classical genetic identification studies are based on marker polymorphisms, but polymorphism-based techniques are time and labor intensive and often cannot distinguish between closely related individuals. Illumina sequencing technologies provide the detailed sequence data required for rapid and efficient differentiation of related species, lines/cultivars, and individuals in a cost-effective manner. Here we describe the use of Illumina high-throughput exome sequencing, coupled with SNP mapping, as a rapid means of distinguishing between related cultivars of the lignocellulosic bioenergy crop giant miscanthusmore » (Miscanthus6giganteus). We provide the first exome sequence database for Miscanthus species complete with Gene Ontology (GO) functional annotations."« less

  12. Identification of differentially expressed subnetworks based on multivariate ANOVA

    PubMed Central

    Hwang, Taeyoung; Park, Taesung

    2009-01-01

    Background Since high-throughput protein-protein interaction (PPI) data has recently become available for humans, there has been a growing interest in combining PPI data with other genome-wide data. In particular, the identification of phenotype-related PPI subnetworks using gene expression data has been of great concern. Successful integration for the identification of significant subnetworks requires the use of a search algorithm with a proper scoring method. Here we propose a multivariate analysis of variance (MANOVA)-based scoring method with a greedy search for identifying differentially expressed PPI subnetworks. Results Given the MANOVA-based scoring method, we performed a greedy search to identify the subnetworks with the maximum scores in the PPI network. Our approach was successfully applied to human microarray datasets. Each identified subnetwork was annotated with the Gene Ontology (GO) term, resulting in the phenotype-related functional pathway or complex. We also compared these results with those of other scoring methods such as t statistic- and mutual information-based scoring methods. The MANOVA-based method produced subnetworks with a larger number of proteins than the other methods. Furthermore, the subnetworks identified by the MANOVA-based method tended to consist of highly correlated proteins. Conclusion This article proposes a MANOVA-based scoring method to combine PPI data with expression data using a greedy search. This method is recommended for the highly sensitive detection of large subnetworks. PMID:19405941

  13. Discrimination of reservoir dolostone within tight limestone using rock physics modeling and pre-stack parameters

    NASA Astrophysics Data System (ADS)

    Park, G.; Lee, B.; Lee, G.

    2013-12-01

    Dolostones may be differentiated from limestones based on various pre-stack seismic parameters as they are denser and faster. However, because the seismic properties of a rock are affected strongly by porosity, porous dolostones may not be significantly denser and faster than limestones. We computed various pre-stack parameters (P-impedance, S-impedance, Vp/Vs, Poisson's ratio, Lamé constants) for tight limestones using the Vp and density logs from a well that penetrated Jurassic carbonate and the Vs log, constructed from the empirical relationships of Vp and Vs. The pre-stack parameters of dolostones with 1% - 40% porosity were estimated based on the bulk and shear moduli and bulk densities computed from the formulas proposed by various workers, including Gassmann equations. Crossplots of the pre-stack parameters show that the Lamé constants (λ, μ) are most effective in differentiating dolostones from limestones. In particular, the λρ -μρ vs. μρ crossplot shows a clear-cut separation of the porous dolostones and tight limestones; the porous dolostones plot exclusively to the left of the λρ -μρ of about 25 GPa.

  14. Wearable solar cells by stacking textile electrodes.

    PubMed

    Pan, Shaowu; Yang, Zhibin; Chen, Peining; Deng, Jue; Li, Houpu; Peng, Huisheng

    2014-06-10

    A new and general method to produce flexible, wearable dye-sensitized solar cell (DSC) textiles by the stacking of two textile electrodes has been developed. A metal-textile electrode that was made from micrometer-sized metal wires was used as a working electrode, while the textile counter electrode was woven from highly aligned carbon nanotube fibers with high mechanical strengths and electrical conductivities. The resulting DSC textile exhibited a high energy conversion efficiency that was well maintained under bending. Compared with the woven DSC textiles that are based on wire-shaped devices, this stacked DSC textile unexpectedly exhibited a unique deformation from a rectangle to a parallelogram, which is highly desired in portable electronics. This lightweight and wearable stacked DSC textile is superior to conventional planar DSCs because the energy conversion efficiency of the stacked DSC textile was independent of the angle of incident light. PMID:24789065

  15. Differential geometry based solvation model. III. Quantum formulation

    PubMed Central

    Chen, Zhan; Wei, Guo-Wei

    2011-01-01

    Solvation is of fundamental importance to biomolecular systems. Implicit solvent models, particularly those based on the Poisson-Boltzmann equation for electrostatic analysis, are established approaches for solvation analysis. However, ad hoc solvent-solute interfaces are commonly used in the implicit solvent theory. Recently, we have introduced differential geometry based solvation models which allow the solvent-solute interface to be determined by the variation of a total free energy functional. Atomic fixed partial charges (point charges) are used in our earlier models, which depends on existing molecular mechanical force field software packages for partial charge assignments. As most force field models are parameterized for a certain class of molecules or materials, the use of partial charges limits the accuracy and applicability of our earlier models. Moreover, fixed partial charges do not account for the charge rearrangement during the solvation process. The present work proposes a differential geometry based multiscale solvation model which makes use of the electron density computed directly from the quantum mechanical principle. To this end, we construct a new multiscale total energy functional which consists of not only polar and nonpolar solvation contributions, but also the electronic kinetic and potential energies. By using the Euler-Lagrange variation, we derive a system of three coupled governing equations, i.e., the generalized Poisson-Boltzmann equation for the electrostatic potential, the generalized Laplace-Beltrami equation for the solvent-solute boundary, and the Kohn-Sham equations for the electronic structure. We develop an iterative procedure to solve three coupled equations and to minimize the solvation free energy. The present multiscale model is numerically validated for its stability, consistency and accuracy, and is applied to a few sets of molecules, including a case which is difficult for existing solvation models. Comparison is made

  16. Stacking of Interferometric Data: New Tools for Stacking of ALMA Data

    NASA Astrophysics Data System (ADS)

    Knudsen, K. K.; Lindroos, L.; Vlemmings, W.; Conway, J.; Martí-Vidal, I.

    2015-12-01

    Radio and mm observations play an important role in determining the star formation properties of high-redshift galaxies. With the unprecedented sensitivity, ALMA now enable studies of faint , distant star-forming galaxies. However, most galaxies with low star formation rates at high redshift are too faint to be detected individually at these wavelengths. A way to study such galaxies is to use stacking. By averaging the emission of a large number of galaxies detected in optical or near-infrared surveys, we can achieve statistical detection. We investigate methods for stacking data from interferometric surveys. Interferometry poses unique challenges in stacking due to the nature of this data. We have compared stacking of uv-data with stacking of imaged data, the latter being the commonly used approach. Using simulated data, we find that uv-stacking may provide up to 50% less noise and that image based stacking systematically loses around 10% of the flux. More importantly, we find that the uv-stacking yield more robust results, especially in the case of (marginally) resolved sources and mosaicked data.

  17. Stacking interactions in PUF-RNA complexes

    SciTech Connect

    Yiling Koh, Yvonne; Wang, Yeming; Qiu, Chen; Opperman, Laura; Gross, Leah; Tanaka Hall, Traci M; Wickens, Marvin

    2012-07-02

    Stacking interactions between amino acids and bases are common in RNA-protein interactions. Many proteins that regulate mRNAs interact with single-stranded RNA elements in the 3' UTR (3'-untranslated region) of their targets. PUF proteins are exemplary. Here we focus on complexes formed between a Caenorhabditis elegans PUF protein, FBF, and its cognate RNAs. Stacking interactions are particularly prominent and involve every RNA base in the recognition element. To assess the contribution of stacking interactions to formation of the RNA-protein complex, we combine in vivo selection experiments with site-directed mutagenesis, biochemistry, and structural analysis. Our results reveal that the identities of stacking amino acids in FBF affect both the affinity and specificity of the RNA-protein interaction. Substitutions in amino acid side chains can restrict or broaden RNA specificity. We conclude that the identities of stacking residues are important in achieving the natural specificities of PUF proteins. Similarly, in PUF proteins engineered to bind new RNA sequences, the identity of stacking residues may contribute to 'target' versus 'off-target' interactions, and thus be an important consideration in the design of proteins with new specificities.

  18. Gene stacking by recombinases

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Efficient methods of stacking genes into plant genomes are needed to expedite transfer of multigenic traits into diverse crops grown in a variety of environments. Over two decades of research has identified several site-specific recombinases that carry out efficient cis and trans recombination betw...

  19. Stacking with No Planarity?

    PubMed

    Gunaydin, Hakan; Bartberger, Michael D

    2016-04-14

    This viewpoint describes the results obtained from matched molecular pair analyses and quantum mechanics calculations that show unsaturated rings found in drug-like molecules may be replaced with their saturated counterparts without losing potency even if they are engaged in stacking interactions with the side chains of aromatic residues. PMID:27096037

  20. Differential equation based method for accurate approximations in optimization

    NASA Technical Reports Server (NTRS)

    Pritchard, Jocelyn I.; Adelman, Howard M.

    1990-01-01

    This paper describes a method to efficiently and accurately approximate the effect of design changes on structural response. The key to this new method is to interpret sensitivity equations as differential equations that may be solved explicitly for closed form approximations, hence, the method is denoted the Differential Equation Based (DEB) method. Approximations were developed for vibration frequencies, mode shapes and static displacements. The DEB approximation method was applied to a cantilever beam and results compared with the commonly-used linear Taylor series approximations and exact solutions. The test calculations involved perturbing the height, width, cross-sectional area, tip mass, and bending inertia of the beam. The DEB method proved to be very accurate, and in msot cases, was more accurate than the linear Taylor series approximation. The method is applicable to simultaneous perturbation of several design variables. Also, the approximations may be used to calculate other system response quantities. For example, the approximations for displacement are used to approximate bending stresses.

  1. 23. Brick coke quencher, brick stack, metal stack to right, ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    23. Brick coke quencher, brick stack, metal stack to right, coke gas pipe to left; in background, BOF building, limestone piles, Levy's Slag Dump. Looking north/northwest - Rouge Steel Company, 3001 Miller Road, Dearborn, MI

  2. Differential membrane-based nanocalorimeter for high-resolution measurements of low-temperature specific heat.

    PubMed

    Tagliati, S; Krasnov, V M; Rydh, A

    2012-05-01

    A differential, membrane-based nanocalorimeter for general specific heat studies of very small samples, ranging from 0.5 mg to sub-μg in mass, is described. The calorimeter operates over the temperature range from above room temperature down to 0.5 K. It consists of a pair of cells, each of which is a stack of heaters and thermometer in the center of a silicon nitride membrane, in total giving a background heat capacity less than 100 nJ/K at 300 K, decreasing to 10 pJ/K at 1 K. The device has several distinctive features: (i) The resistive thermometer, made of a Ge(1 - x)Au(x) alloy, displays a high dimensionless sensitivity ∣dlnR∕dlnT∣ ≳ 1 over the entire temperature range. (ii) The sample is placed in direct contact with the thermometer, which is allowed to self-heat. The thermometer can thus be operated at high dc current to increase the resolution. (iii) Data are acquired with a set of eight synchronized lock-in amplifiers measuring dc, 1st and 2nd harmonic signals of heaters and thermometer. This gives high resolution and allows continuous output adjustments without additional noise. (iv) Absolute accuracy is achieved via a variable-frequency-fixed-phase technique in which the measurement frequency is automatically adjusted during the measurements to account for the temperature variation of the sample heat capacity and the device thermal conductance. The performance of the calorimeter is illustrated by studying the heat capacity of a small Au sample and the specific heat of a 2.6 μg piece of superconducting Pb in various magnetic fields. PMID:22667657

  3. Differential geometry based solvation model II: Lagrangian formulation.

    PubMed

    Chen, Zhan; Baker, Nathan A; Wei, G W

    2011-12-01

    Solvation is an elementary process in nature and is of paramount importance to more sophisticated chemical, biological and biomolecular processes. The understanding of solvation is an essential prerequisite for the quantitative description and analysis of biomolecular systems. This work presents a Lagrangian formulation of our differential geometry based solvation models. The Lagrangian representation of biomolecular surfaces has a few utilities/advantages. First, it provides an essential basis for biomolecular visualization, surface electrostatic potential map and visual perception of biomolecules. Additionally, it is consistent with the conventional setting of implicit solvent theories and thus, many existing theoretical algorithms and computational software packages can be directly employed. Finally, the Lagrangian representation does not need to resort to artificially enlarged van der Waals radii as often required by the Eulerian representation in solvation analysis. The main goal of the present work is to analyze the connection, similarity and difference between the Eulerian and Lagrangian formalisms of the solvation model. Such analysis is important to the understanding of the differential geometry based solvation model. The present model extends the scaled particle theory of nonpolar solvation model with a solvent-solute interaction potential. The nonpolar solvation model is completed with a Poisson-Boltzmann (PB) theory based polar solvation model. The differential geometry theory of surfaces is employed to provide a natural description of solvent-solute interfaces. The optimization of the total free energy functional, which encompasses the polar and nonpolar contributions, leads to coupled potential driven geometric flow and PB equations. Due to the development of singularities and nonsmooth manifolds in the Lagrangian representation, the resulting potential-driven geometric flow equation is embedded into the Eulerian representation for the purpose of

  4. Differential geometry based solvation model II: Lagrangian formulation

    PubMed Central

    Chen, Zhan; Baker, Nathan A.; Wei, G. W.

    2010-01-01

    Solvation is an elementary process in nature and is of paramount importance to more sophisticated chemical, biological and biomolecular processes. The understanding of solvation is an essential prerequisite for the quantitative description and analysis of biomolecular systems. This work presents a Lagrangian formulation of our differential geometry based solvation model. The Lagrangian representation of biomolecular surfaces has a few utilities/advantages. First, it provides an essential basis for biomolecular visualization, surface electrostatic potential map and visual perception of biomolecules. Additionally, it is consistent with the conventional setting of implicit solvent theories and thus, many existing theoretical algorithms and computational software packages can be directly employed. Finally, the Lagrangian representation does not need to resort to artificially enlarged van der Waals radii as often required by the Eulerian representation in solvation analysis. The main goal of the present work is to analyze the connection, similarity and difference between the Eulerian and Lagrangian formalisms of the solvation model. Such analysis is important to the understanding of the differential geometry based solvation model. The present model extends the scaled particle theory (SPT) of nonpolar solvation model with a solvent-solute interaction potential. The nonpolar solvation model is completed with a Poisson-Boltzmann (PB) theory based polar solvation model. The differential geometry theory of surfaces is employed to provide a natural description of solvent-solute interfaces. The minimization of the total free energy functional, which encompasses the polar and nonpolar contributions, leads to coupled potential driven geometric flow and Poisson-Boltzmann equations. Due to the development of singularities and nonsmooth manifolds in the Lagrangian representation, the resulting potential-driven geometric flow equation is embedded into the Eulerian representation for

  5. Electronic coupling between photo-excited stacked bases in DNA and RNA strands with emphasis on the bright states initially populated.

    PubMed

    Nielsen, Lisbeth Munksgaard; Hoffmann, Søren Vrønning; Nielsen, Steen Brøndsted

    2013-08-01

    In biology the interplay between multiple light-absorbers gives rise to complex quantum effects such as superposition states that are of extreme importance for life, both for harvesting solar energy and likely protecting nucleic acids from radiation damage. Still the characteristics of these states and their quantum dynamics are a much debated issue. While the electronic properties of single bases are fairly well understood, the situation for strands is complicated by the fact that stacked bases electronically couple when photoexcited. These newly arising states are denoted as exciton states and are simply linear combinations of localised wavefunctions that involve N - 1 ground-state bases and one base in its excited state (cf. the Frenkel exciton model). There is disagreement over the number of bases, N, that coherently couple, i.e., the spatial extent of the exciton, and how electronic deexcitation back to the ground state occurs. The importance of dark charge-transfer states has been inferred both from time-resolved fluorescence and transient absorption experiments. These states were suggested to be responsible for long deexcitation times but it is unclear whether 'long' is tens of picoseconds or nanoseconds. In this review paper, we focus on the bright states initially populated and discuss their nature based on information obtained from systematic absorption and circular dichroism experiments on single strands of different lengths. Our results from the last five years are compared with those from other groups, and are discussed in the context of successive deexcitation schemes. Pieces to the puzzle have come from different experiments and theory but a complete description has yet to emerge. As such the story about DNA/RNA photophysical decay mechanisms resembles the tale about the blind men and the elephant where all see the beast in different, correct but incomplete ways. PMID:23545881

  6. Differential evolution enhanced with multiobjective sorting-based mutation operators.

    PubMed

    Wang, Jiahai; Liao, Jianjun; Zhou, Ying; Cai, Yiqiao

    2014-12-01

    Differential evolution (DE) is a simple and powerful population-based evolutionary algorithm. The salient feature of DE lies in its mutation mechanism. Generally, the parents in the mutation operator of DE are randomly selected from the population. Hence, all vectors are equally likely to be selected as parents without selective pressure at all. Additionally, the diversity information is always ignored. In order to fully exploit the fitness and diversity information of the population, this paper presents a DE framework with multiobjective sorting-based mutation operator. In the proposed mutation operator, individuals in the current population are firstly sorted according to their fitness and diversity contribution by nondominated sorting. Then parents in the mutation operators are proportionally selected according to their rankings based on fitness and diversity, thus, the promising individuals with better fitness and diversity have more opportunity to be selected as parents. Since fitness and diversity information is simultaneously considered for parent selection, a good balance between exploration and exploitation can be achieved. The proposed operator is applied to original DE algorithms, as well as several advanced DE variants. Experimental results on 48 benchmark functions and 12 real-world application problems show that the proposed operator is an effective approach to enhance the performance of most DE algorithms studied. PMID:24802378

  7. Energy Expenditure of Sport Stacking

    ERIC Educational Resources Information Center

    Murray, Steven R.; Udermann, Brian E.; Reineke, David M.; Battista, Rebecca A.

    2009-01-01

    Sport stacking is an activity taught in many physical education programs. The activity, although very popular, has been studied minimally, and the energy expenditure for sport stacking is unknown. Therefore, the purposes of this study were to determine the energy expenditure of sport stacking in elementary school children and to compare that value…

  8. Iridium Interfacial Stack (IRIS)

    NASA Technical Reports Server (NTRS)

    Spry, David James (Inventor)

    2015-01-01

    An iridium interfacial stack ("IrIS") and a method for producing the same are provided. The IrIS may include ordered layers of TaSi.sub.2, platinum, iridium, and platinum, and may be placed on top of a titanium layer and a silicon carbide layer. The IrIS may prevent, reduce, or mitigate against diffusion of elements such as oxygen, platinum, and gold through at least some of its layers.

  9. Structural color-tunable mesoporous bragg stack layers based on graft copolymer self-assembly for high-efficiency solid-state dye-sensitized solar cells

    NASA Astrophysics Data System (ADS)

    Lee, Chang Soo; Park, Jung Tae; Kim, Jong Hak

    2016-08-01

    We present a facile fabrication route for structural color-tunable mesoporous Bragg stack (BS) layers based on the self-assembly of a cost-effective graft copolymer. The mesoporous BS layers are prepared through the alternating deposition of organized mesoporous-TiO2 (OM-TiO2) and -SiO2 (OM-SiO2) films on the non-conducting side of the counter electrode in dye-sensitized solar cells (DSSCs). The OM layers with controlled porosity, pore size, and refractive index are templated with amphiphilic graft copolymers consisting of poly(vinyl chloride) backbones and poly(oxyethylene methacrylate) side chains, i.e., PVC-g-POEM. The morphology and properties of the structural color-tunable mesoporous BS-functionalized electrodes are characterized using energy filtered transmission electron microscopy (EF-TEM), field emission-scanning electron microscopy (FE-SEM), spectroscopic ellipsometry, and reflectance spectroscopy. The solid-state DSSCs (ssDSSCs) based on a structural color-tunable mesoporous BS counter electrode with a single-component solid electrolyte show an energy conversion efficiency (η) of 7.1%, which is much greater than that of conventional nanocrystalline TiO2-based cells and one of the highest values for N719 dye-based ssDSSCs. The enhancement of η is due to the enhancement of current density (Jsc), attributed to the improved light harvesting properties without considerable decrease in fill factor (FF) or open-circuit voltage (Voc), as confirmed by incident photon-to-electron conversion efficiency (IPCE) and electrochemical impedance spectroscopy (EIS).

  10. Three-Dimensional Flexible Complementary Metal-Oxide-Semiconductor Logic Circuits Based On Two-Layer Stacks of Single-Walled Carbon Nanotube Networks.

    PubMed

    Zhao, Yudan; Li, Qunqing; Xiao, Xiaoyang; Li, Guanhong; Jin, Yuanhao; Jiang, Kaili; Wang, Jiaping; Fan, Shoushan

    2016-02-23

    We have proposed and fabricated stable and repeatable, flexible, single-walled carbon nanotube (SWCNT) thin film transistor (TFT) complementary metal-oxide-semiconductor (CMOS) integrated circuits based on a three-dimensional (3D) structure. Two layers of SWCNT-TFT devices were stacked, where one layer served as n-type devices and the other one served as p-type devices. On the basis of this method, it is able to save at least half of the area required to construct an inverter and make large-scale and high-density integrated CMOS circuits easier to design and manufacture. The 3D flexible CMOS inverter gain can be as high as 40, and the total noise margin is more than 95%. Moreover, the input and output voltage of the inverter are exactly matched for cascading. 3D flexible CMOS NOR, NAND logic gates, and 15-stage ring oscillators were fabricated on PI substrates with high performance as well. Stable electrical properties of these circuits can be obtained with bending radii as small as 3.16 mm, which shows that such a 3D structure is a reliable architecture and suitable for carbon nanotube electrical applications in complex flexible and wearable electronic devices. PMID:26768020

  11. A comprehensive theoretical model for on-chip microring-based photonic fractional differentiators

    PubMed Central

    Jin, Boyuan; Yuan, Jinhui; Wang, Kuiru; Sang, Xinzhu; Yan, Binbin; Wu, Qiang; Li, Feng; Zhou, Xian; Zhou, Guiyao; Yu, Chongxiu; Lu, Chao; Yaw Tam, Hwa; Wai, P. K. A.

    2015-01-01

    Microring-based photonic fractional differentiators play an important role in the on-chip all-optical signal processing. Unfortunately, the previous works do not consider the time-reversal and the time delay characteristics of the microring-based fractional differentiator. They also do not include the effect of input pulse width on the output. In particular, it cannot explain why the microring-based differentiator with the differentiation order n > 1 has larger output deviation than that with n < 1, and why the microring-based differentiator cannot reproduce the three-peak output waveform of an ideal differentiator with n > 1. In this paper, a comprehensive theoretical model is proposed. The critically-coupled microring resonator is modeled as an ideal first-order differentiator, while the under-coupled and over-coupled resonators are modeled as the time-reversed ideal fractional differentiators. Traditionally, the over-coupled microring resonators are used to form the differentiators with 1 < n < 2. However, we demonstrate that smaller fitting error can be obtained if the over-coupled microring resonator is fitted by an ideal differentiator with n < 1. The time delay of the differentiator is also considered. Finally, the influences of some key factors on the output waveform and deviation are discussed. The proposed theoretical model is beneficial for the design and application of the microring-based fractional differentiators. PMID:26381934

  12. LC–MS Based Detection of Differential Protein Expression

    PubMed Central

    Tuli, Leepika; Ressom, Habtom W.

    2010-01-01

    While several techniques are available in proteomics, LC-MS based analysis of complex protein/peptide mixtures has turned out to be a mainstream analytical technique for quantitative proteomics. Significant technical advances at both sample preparation/separation and mass spectrometry levels have revolutionized comprehensive proteome analysis. Moreover, automation and robotics for sample handling process permit multiple sampling with high throughput. For LC-MS based quantitative proteomics, sample preparation turns out to be critical step, as it can significantly influence sensitivity of downstream analysis. Several sample preparation strategies exist, including depletion of high abundant proteins or enrichment steps that facilitate protein quantification but with a compromise of focusing on a smaller subset of a proteome. While several experimental strategies have emerged, certain limitations such as physiochemical properties of a peptide/protein, protein turnover in a sample, analytical platform used for sample analysis and data processing, still imply challenges to quantitative proteomics. Other aspects that make analysis of a proteome a challenging task include dynamic nature of a proteome, need for efficient and fast analysis of protein due to its constant modifications inside a cell, concentration range of proteins that exceed dynamic range of a single analytical method, and absence of appropriate bioinformatics tools for analysis of large volume and high dimensional data. This paper gives an overview of various LC-MS methods currently used in quantitative proteomics and their potential for detecting differential protein expression. Fundamental steps such as sample preparation, LC separation, mass spectrometry, quantitative assessment and protein identification are discussed. For quantitative assessment of protein expression, both label and label free approaches are evaluated for their set of merits and demerits. While most of these methods edge on providing

  13. A novel method for identifying a graph-based representation of 3-D microvascular networks from fluorescence microscopy image stacks

    PubMed Central

    Xu, Xiaoyin; Ben-Zvi, Ayal; Lacoste, Baptiste; Gu, Chenghua; Miller, Eric L.

    2016-01-01

    A novel approach to determine the global topological structure of a microvasculature network from noisy and low-resolution fluorescence microscopy data that does not require the detailed segmentation of the vessel structure is proposed here. The method is most appropriate for problems where the tortuosity of the network is relatively low and proceeds by directly computing a piecewise linear approximation to the vasculature skeleton through the construction of a graph in three dimensions whose edges represent the skeletal approximation and vertices are located at Critical Points (CPs) on the microvasculature. The CPs are defined as vessel junctions or locations of relatively large curvature along the centerline of a vessel. Our method consists of two phases. First, we provide a CP detection technique that, for junctions in particular, does not require any a priori geometric information such as direction or degree. Second, connectivity between detected nodes is determined via the solution of a Binary Integer Program (BIP) whose variables determine whether a potential edge between nodes is or is not included in the final graph. The utility function in this problem reflects both intensity-based and structural information along the path connecting the two nodes. Qualitative and quantitative results confirm the usefulness and accuracy of this method. This approach provides a mean of correctly capturing the connectivity patterns in vessels that are missed by more traditional segmentation and binarization schemes because of imperfections in the images which manifest as dim or broken vessels. PMID:25515433

  14. A novel method for identifying a graph-based representation of 3-D microvascular networks from fluorescence microscopy image stacks.

    PubMed

    Almasi, Sepideh; Xu, Xiaoyin; Ben-Zvi, Ayal; Lacoste, Baptiste; Gu, Chenghua; Miller, Eric L

    2015-02-01

    A novel approach to determine the global topological structure of a microvasculature network from noisy and low-resolution fluorescence microscopy data that does not require the detailed segmentation of the vessel structure is proposed here. The method is most appropriate for problems where the tortuosity of the network is relatively low and proceeds by directly computing a piecewise linear approximation to the vasculature skeleton through the construction of a graph in three dimensions whose edges represent the skeletal approximation and vertices are located at Critical Points (CPs) on the microvasculature. The CPs are defined as vessel junctions or locations of relatively large curvature along the centerline of a vessel. Our method consists of two phases. First, we provide a CP detection technique that, for junctions in particular, does not require any a priori geometric information such as direction or degree. Second, connectivity between detected nodes is determined via the solution of a Binary Integer Program (BIP) whose variables determine whether a potential edge between nodes is or is not included in the final graph. The utility function in this problem reflects both intensity-based and structural information along the path connecting the two nodes. Qualitative and quantitative results confirm the usefulness and accuracy of this method. This approach provides a mean of correctly capturing the connectivity patterns in vessels that are missed by more traditional segmentation and binarization schemes because of imperfections in the images which manifest as dim or broken vessels. PMID:25515433

  15. A stack-based flex-compressive piezoelectric energy harvesting cell for large quasi-static loads

    NASA Astrophysics Data System (ADS)

    Wang, Xianfeng; Shi, Zhifei; Wang, Jianjun; Xiang, Hongjun

    2016-05-01

    In this paper, a flex-compressive piezoelectric energy harvesting cell (F-C PEHC) is proposed. This cell has a large load capacity and adjustable force transmission coefficient assembled from replaceable individual components. A statically indeterminate mechanical model for the cell is established and the theoretical force transmission coefficient is derived based on structural mechanics. An inverse correlation between the force transmission coefficient and the relative stiffness of Element 1’s limbs is found. An experimental study is also conducted to verify the theoretical results. Both weakened and enhanced modes are achieved for this experiment. The maximum power output approaches 4.5 mW at 120 kΩ resistive load under a 4 Hz harmonic excitation with 600 N amplitude for the weakened mode, whereas the maximum power output approaches 17.8 mW at 120 kΩ under corresponding load for the enhanced mode. The experimental measurements of output voltages are compared with the theoretical ones in both weakened and enhanced modes. The experimental measurements of open-circuit voltages are slightly smaller for harmonic excitations with amplitudes that vary from 400 N to 800 N and the errors are within 14%. During the experiment, the maximum load approaches 2.8 kN which is quite large but not the ultimate bearing capacity of the present device. The mechanical model and theoretical transmission coefficient can be used in other flex-compressive mode energy transducers.

  16. Stacking attributes from local slopes

    NASA Astrophysics Data System (ADS)

    Ghosh, S.; Gajewski, D.; Dell, S.; Nath, S. K.; Wave Inversion Technology (Wit) Consortium

    2010-12-01

    CMP stacking is controlled by the stacking velocity which is determined by a one-dimendional optimization procedure using semblance as a coherence criterion. New multi-parameter stacking formulas like the Common Reflection Surface (CRS) operator consider neighboring CMP locations in the stack. These methods stack considerably more traces than conventional CMP processing leading to stacked sections with an improved signal-to-nose ratio and better image quality. The corresponding stacking trajectories are controlled by three stacking attributes for the 2-D case and eight for the 3-D case. The determination of these attributes requires a multi-dimensional optimization procedure which is time consuming. If we know good starting values, we can limit the search intervals considerably and speed up the process. It was shown that the stacking attributes are linked to local slopes in seismic zero offset and constant offset sections. Therefore, the determination of local slopes can guide the choice of the search intervals in the optimization procedure. We use structural tensors for the determination of local slopes. Structural tensors represent a versatile tool to investigate coherent features in the data superior to other slop determination tools like slant stacking or plane wave destructors. The window size is adjustable and allows to optimize smoothing and smearing in the slope determination process where the smoothing can be performed along structural events (directional smoothing). This smart feature helps to consider complex geologies and acknowledges faults and conflicting dips without any significant change in computation time. Different variants of the algorithm are used to determine slopes in CMP gathers, stacked and time or depth migrated sections. The results of the local slope determinations are used to compute stacking attributes for the CRS method. We compare these to stacking attributes obtained from optimization. The attributes determined from local slopes

  17. Differential thiol-based switches jumpstart Vibrio cholerae pathogenesis

    PubMed Central

    Liu, Zhi; Wang, Hui; Zhou, Zhigang; Naseer, Nawar; Xiang, Fu; Kan, Biao; Goulian, Mark; Zhu, Jun

    2015-01-01

    Bacterial pathogens utilize gene expression versatility to adapt to environmental changes. Vibrio cholerae, the causative agent of cholera, encounters redox potential changes when it transitions from oxygen-rich aquatic reservoirs to the oxygen-limiting human gastrointestinal tract. We previously showed that the virulence regulator AphB uses thiol-based switches to sense the anoxic host environment and transcriptionally activate the key virulence activator tcpP. Here, by performing a high-throughput transposon sequencing screen in vivo, we identified OhrR as another regulator that enables V. cholerae rapid anoxic adaptation. Like AphB, reduced OhrR binds to and regulates the tcpP promoter. OhrR and AphB displayed differential dynamics in response to redox potential changes: OhrR is reduced more rapidly than AphB. Furthermore, OhrR thiol modification is required for rapid activation of virulence and successful colonization. This reveals a mechanism whereby bacterial pathogens employ posttranslational modifications of multiple transcription factors to sense and adapt to dynamic environmental changes. PMID:26748713

  18. GPU-based parallel clustered differential pulse code modulation

    NASA Astrophysics Data System (ADS)

    Wu, Jiaji; Li, Wenze; Kong, Wanqiu

    2015-10-01

    Hyperspectral remote sensing technology is widely used in marine remote sensing, geological exploration, atmospheric and environmental remote sensing. Owing to the rapid development of hyperspectral remote sensing technology, resolution of hyperspectral image has got a huge boost. Thus data size of hyperspectral image is becoming larger. In order to reduce their saving and transmission cost, lossless compression for hyperspectral image has become an important research topic. In recent years, large numbers of algorithms have been proposed to reduce the redundancy between different spectra. Among of them, the most classical and expansible algorithm is the Clustered Differential Pulse Code Modulation (CDPCM) algorithm. This algorithm contains three parts: first clusters all spectral lines, then trains linear predictors for each band. Secondly, use these predictors to predict pixels, and get the residual image by subtraction between original image and predicted image. Finally, encode the residual image. However, the process of calculating predictors is timecosting. In order to improve the processing speed, we propose a parallel C-DPCM based on CUDA (Compute Unified Device Architecture) with GPU. Recently, general-purpose computing based on GPUs has been greatly developed. The capacity of GPU improves rapidly by increasing the number of processing units and storage control units. CUDA is a parallel computing platform and programming model created by NVIDIA. It gives developers direct access to the virtual instruction set and memory of the parallel computational elements in GPUs. Our core idea is to achieve the calculation of predictors in parallel. By respectively adopting global memory, shared memory and register memory, we finally get a decent speedup.

  19. Module Based Differential Coexpression Analysis Method for Type 2 Diabetes

    PubMed Central

    Yuan, Lin; Zheng, Chun-Hou; Xia, Jun-Feng; Huang, De-Shuang

    2015-01-01

    More and more studies have shown that many complex diseases are contributed jointly by alterations of numerous genes. Genes often coordinate together as a functional biological pathway or network and are highly correlated. Differential coexpression analysis, as a more comprehensive technique to the differential expression analysis, was raised to research gene regulatory networks and biological pathways of phenotypic changes through measuring gene correlation changes between disease and normal conditions. In this paper, we propose a gene differential coexpression analysis algorithm in the level of gene sets and apply the algorithm to a publicly available type 2 diabetes (T2D) expression dataset. Firstly, we calculate coexpression biweight midcorrelation coefficients between all gene pairs. Then, we select informative correlation pairs using the “differential coexpression threshold” strategy. Finally, we identify the differential coexpression gene modules using maximum clique concept and k-clique algorithm. We apply the proposed differential coexpression analysis method on simulated data and T2D data. Two differential coexpression gene modules about T2D were detected, which should be useful for exploring the biological function of the related genes. PMID:26339648

  20. Barrier RF stacking

    SciTech Connect

    Weiren Chou and Akira Takagi

    2003-02-24

    This paper introduces a new method for stacking beams in the longitudinal phase space. It uses RF barriers to confine and compress beams in an accelerator, provided that the machine momentum acceptance is a few times larger than the momentum spread of the injected beam. This is the case for the Fermilab Main Injector. A barrier RF system employing Finemet cores and high-voltage solid-state switches is under construction. The goal is to double the number of protons per cycle on the production target for Run2 and NuMI experiments.

  1. 29 CFR 1625.7 - Differentiations based on reasonable factors other than age.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... COMMISSION AGE DISCRIMINATION IN EMPLOYMENT ACT Interpretations § 1625.7 Differentiations based on reasonable... and avoid discrimination; (iii) The extent to which the employer limited supervisors' discretion...

  2. 29 CFR 1625.7 - Differentiations based on reasonable factors other than age.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... COMMISSION AGE DISCRIMINATION IN EMPLOYMENT ACT Interpretations § 1625.7 Differentiations based on reasonable... and avoid discrimination; (iii) The extent to which the employer limited supervisors' discretion...

  3. 29 CFR 1625.7 - Differentiations based on reasonable factors other than age.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... COMMISSION AGE DISCRIMINATION IN EMPLOYMENT ACT Interpretations § 1625.7 Differentiations based on reasonable... and avoid discrimination; (iii) The extent to which the employer limited supervisors' discretion...

  4. Sensing properties of periodic stack of nano-films deposited with various vapor-based techniques on optical fiber end-face

    NASA Astrophysics Data System (ADS)

    Koba, Marcin; RóŻycki-Bakon, Radosław; Firek, Piotr; Śmietana, Mateusz

    2015-07-01

    This work presents a study on sensing capabilities of stacks of nano-films deposited on a single-mode optical fiber end-faces. The stacks consist of periodically interchanging thin-film layers of materials characterized by different refractive indices (RI). The number of layers is relatively small to encourage light-analyte interactions. Two different deposition techniques are considered, i.e., radio frequency plasma enhanced chemical vapor deposition (RF PECVD) and physical vapor deposition by reactive magnetron sputtering (RMS). The former technique allows to deposit stacks consisting of silicon nitride nano-films, and the latter is well suited for aluminum and titanium oxides alternating layers. The structures are tested for external RI and temperature measurements.

  5. Chromatin-based Mechanisms of Renal Epithelial Differentiation

    PubMed Central

    2011-01-01

    Successful regenerative renal medicine depends on understanding the molecular mechanisms by which diverse phenotypes of epithelial cells differentiate from metanephric mesenchyme to populate nephrons. Whereas many genes are maintained in a poised state within the population of pluripotent progenitors, specialized epithelial functions reflect the selective expression of a subset of genes and the repression of all others. Here we highlight some common mechanisms of cell differentiation and epigenetic regulation to discuss their implications for renal epithelial development, repair, and disease. PMID:21700830

  6. A Late Pleistocene sea level stack

    NASA Astrophysics Data System (ADS)

    Spratt, Rachel M.; Lisiecki, Lorraine E.

    2016-04-01

    Late Pleistocene sea level has been reconstructed from ocean sediment core data using a wide variety of proxies and models. However, the accuracy of individual reconstructions is limited by measurement error, local variations in salinity and temperature, and assumptions particular to each technique. Here we present a sea level stack (average) which increases the signal-to-noise ratio of individual reconstructions. Specifically, we perform principal component analysis (PCA) on seven records from 0 to 430 ka and five records from 0 to 798 ka. The first principal component, which we use as the stack, describes ˜ 80 % of the variance in the data and is similar using either five or seven records. After scaling the stack based on Holocene and Last Glacial Maximum (LGM) sea level estimates, the stack agrees to within 5 m with isostatically adjusted coral sea level estimates for Marine Isotope Stages 5e and 11 (125 and 400 ka, respectively). Bootstrapping and random sampling yield mean uncertainty estimates of 9-12 m (1σ) for the scaled stack. Sea level change accounts for about 45 % of the total orbital-band variance in benthic δ18O, compared to a 65 % contribution during the LGM-to-Holocene transition. Additionally, the second and third principal components of our analyses reflect differences between proxy records associated with spatial variations in the δ18O of seawater.

  7. Metallorganic chemical vapor deposition and atomic layer deposition approaches for the growth of hafnium-based thin films from dialkylamide precursors for advanced CMOS gate stack applications

    NASA Astrophysics Data System (ADS)

    Consiglio, Steven P.

    To continue the rapid progress of the semiconductor industry as described by Moore's Law, the feasibility of new material systems for front end of the line (FEOL) process technologies needs to be investigated, since the currently employed polysilicon/SiO2-based transistor system is reaching its fundamental scaling limits. Revolutionary breakthroughs in complementary-metal-oxide-semiconductor (CMOS) technology were recently announced by Intel Corporation and International Business Machines Corporation (IBM), with both organizations revealing significant progress in the implementation of hafnium-based high-k dielectrics along with metal gates. This announcement was heralded by Gordon Moore as "...the biggest change in transistor technology since the introduction of polysilicon gate MOS transistors in the late 1960s." Accordingly, the study described herein focuses on the growth of Hf-based dielectrics and Hf-based metal gates using chemical vapor-based deposition methods, specifically metallorganic chemical vapor deposition (MOCVD) and atomic layer deposition (ALD). A family of Hf source complexes that has received much attention recently due to their desirable properties for implementation in wafer scale manufacturing is the Hf dialkylamide precursors. These precursors are room temperature liquids and possess sufficient volatility and desirable decomposition characteristics for both MOCVD and ALD processing. Another benefit of using these sources is the existence of chemically compatible Si dialkylamide sources as co-precursors for use in Hf silicate growth. The first part of this study investigates properties of MOCVD-deposited HfO2 and HfSixOy using dimethylamido Hf and Si precursor sources using a customized MOCVD reactor. The second part of this study involves a study of wet and dry surface pre-treatments for ALD growth of HfO2 using tetrakis(ethylmethylamido)hafnium in a wafer scale manufacturing environment. The third part of this study is an investigation of

  8. Stacked Extreme Learning Machines.

    PubMed

    Zhou, Hongming; Huang, Guang-Bin; Lin, Zhiping; Wang, Han; Soh, Yeng Chai

    2015-09-01

    Extreme learning machine (ELM) has recently attracted many researchers' interest due to its very fast learning speed, good generalization ability, and ease of implementation. It provides a unified solution that can be used directly to solve regression, binary, and multiclass classification problems. In this paper, we propose a stacked ELMs (S-ELMs) that is specially designed for solving large and complex data problems. The S-ELMs divides a single large ELM network into multiple stacked small ELMs which are serially connected. The S-ELMs can approximate a very large ELM network with small memory requirement. To further improve the testing accuracy on big data problems, the ELM autoencoder can be implemented during each iteration of the S-ELMs algorithm. The simulation results show that the S-ELMs even with random hidden nodes can achieve similar testing accuracy to support vector machine (SVM) while having low memory requirements. With the help of ELM autoencoder, the S-ELMs can achieve much better testing accuracy than SVM and slightly better accuracy than deep belief network (DBN) with much faster training speed. PMID:25361517

  9. Stacked reverberation mapping

    NASA Astrophysics Data System (ADS)

    Fine, S.; Shanks, T.; Green, P.; Kelly, B. C.; Croom, S. M.; Webster, R. L.; Berger, E.; Chornock, R.; Burgett, W. S.; Chambers, K. C.; Kaiser, N.; Price, P. A.

    2013-07-01

    Over the past 20 years reverberation mapping has proved one of the most successful techniques for studying the local (<1 pc) environment of supermassive black holes that drive active galactic nuclei. Key successes of reverberation mapping have been direct black hole mass estimates, the radius-luminosity relation for the Hβ line and the calibration of single-epoch mass estimators commonly employed up to z ˜ 7. However, observing constraints mean that few studies have been successful at z > 0.1, or for the more-luminous quasars that make up the majority of current spectroscopic samples, or for rest-frame ultraviolet emission lines available in optical spectra of z > 0.5 objects. Previously, we described a technique for stacking cross-correlations to obtain reverberation mapping results at high z. Here, we present the first results from a campaign designed for this purpose. We construct stacked cross-correlation functions for the C IV and Mg II lines and find a clear peak in both. We find that the peak in the Mg II correlation is at longer lags than C IV consistent with previous results at low redshift. For the C IV sample, we are able to bin by luminosity and find evidence for increasing lags for more-luminous objects. This C IV radius-luminosity relation is consistent with previous studies but with a fraction of the observational cost.

  10. Neurosphere Based Differentiation of Human iPSC Improves Astrocyte Differentiation.

    PubMed

    Zhou, Shuling; Szczesna, Karolina; Ochalek, Anna; Kobolák, Julianna; Varga, Eszter; Nemes, Csilla; Chandrasekaran, Abinaya; Rasmussen, Mikkel; Cirera, Susanna; Hyttel, Poul; Dinnyés, András; Freude, Kristine K; Avci, Hasan X

    2016-01-01

    Neural progenitor cells (NPCs) derived from human induced pluripotent stem cells (iPSCs) are traditionally maintained and proliferated utilizing two-dimensional (2D) adherent monolayer culture systems. However, NPCs cultured using this system hardly reflect the intrinsic spatial development of brain tissue. In this study, we determined that culturing iPSC-derived NPCs as three-dimensional (3D) floating neurospheres resulted in increased expression of the neural progenitor cell (NPC) markers, PAX6 and NESTIN. Expansion of NPCs in 3D culture methods also resulted in a more homogenous PAX6 expression when compared to 2D culture methods. Furthermore, the 3D propagation method for NPCs resulted in a significant higher expression of the astrocyte markers  GFAP and aquaporin 4 (AQP4) in the differentiated cells. Thus, our 3D propagation method could constitute a useful tool to promote NPC homogeneity and also to increase the differentiation potential of iPSC towards astrocytes. PMID:26798357

  11. Fuel cell stack monitoring and system control

    DOEpatents

    Keskula, Donald H.; Doan, Tien M.; Clingerman, Bruce J.

    2005-01-25

    A control method for monitoring a fuel cell stack in a fuel cell system in which the actual voltage and actual current from the fuel cell stack are monitored. A preestablished relationship between voltage and current over the operating range of the fuel cell is established. A variance value between the actual measured voltage and the expected voltage magnitude for a given actual measured current is calculated and compared with a predetermined allowable variance. An output is generated if the calculated variance value exceeds the predetermined variance. The predetermined voltage-current for the fuel cell is symbolized as a polarization curve at given operating conditions of the fuel cell. Other polarization curves may be generated and used for fuel cell stack monitoring based on different operating pressures, temperatures, hydrogen quantities.

  12. Interference between Coulombic and CT-mediated couplings in molecular aggregates: H- to J-aggregate transformation in perylene-based π-stacks

    NASA Astrophysics Data System (ADS)

    Hestand, Nicholas J.; Spano, Frank C.

    2015-12-01

    The spectroscopic differences between J and H-aggregates are traditionally attributed to the spatial dependence of the Coulombic coupling, as originally proposed by Kasha. However, in tightly packed molecular aggregates wave functions on neighboring molecules overlap, leading to an additional charge transfer (CT) mediated exciton coupling with a vastly different spatial dependence. The latter is governed by the nodal patterns of the molecular LUMOs and HOMOs from which the electron (te) and hole (th) transfer integrals derive. The sign of the CT-mediated coupling depends on the sign of the product teth and is therefore highly sensitive to small (sub-Angstrom) transverse displacements or slips. Given that Coulombic and CT-mediated couplings exist simultaneously in tightly packed molecular systems, the interference between the two must be considered when defining J and H-aggregates. Generally, such π-stacked aggregates do not abide by the traditional classification scheme of Kasha: for example, even when the Coulomb coupling is strong the presence of a similarly strong but destructively interfering CT-mediated coupling results in "null-aggregates" which spectroscopically resemble uncoupled molecules. Based on a Frenkel/CT Holstein Hamiltonian that takes into account both sources of electronic coupling as well as intramolecular vibrations, vibronic spectral signatures are developed for integrated Frenkel/CT systems in both the perturbative and resonance regimes. In the perturbative regime, the sign of the lowest exciton band curvature, which rigorously defines J and H-aggregation, is directly tracked by the ratio of the first two vibronic peak intensities. Even in the resonance regime, the vibronic ratio remains a useful tool to evaluate the J or H nature of the system. The theory developed is applied to the reversible H to J-aggregate transformations recently observed in several perylene bisimide systems.

  13. Interference between Coulombic and CT-mediated couplings in molecular aggregates: H- to J-aggregate transformation in perylene-based π-stacks

    SciTech Connect

    Hestand, Nicholas J.; Spano, Frank C.

    2015-12-28

    The spectroscopic differences between J and H-aggregates are traditionally attributed to the spatial dependence of the Coulombic coupling, as originally proposed by Kasha. However, in tightly packed molecular aggregates wave functions on neighboring molecules overlap, leading to an additional charge transfer (CT) mediated exciton coupling with a vastly different spatial dependence. The latter is governed by the nodal patterns of the molecular LUMOs and HOMOs from which the electron (t{sub e}) and hole (t{sub h}) transfer integrals derive. The sign of the CT-mediated coupling depends on the sign of the product t{sub e}t{sub h} and is therefore highly sensitive to small (sub-Angstrom) transverse displacements or slips. Given that Coulombic and CT-mediated couplings exist simultaneously in tightly packed molecular systems, the interference between the two must be considered when defining J and H-aggregates. Generally, such π-stacked aggregates do not abide by the traditional classification scheme of Kasha: for example, even when the Coulomb coupling is strong the presence of a similarly strong but destructively interfering CT-mediated coupling results in “null-aggregates” which spectroscopically resemble uncoupled molecules. Based on a Frenkel/CT Holstein Hamiltonian that takes into account both sources of electronic coupling as well as intramolecular vibrations, vibronic spectral signatures are developed for integrated Frenkel/CT systems in both the perturbative and resonance regimes. In the perturbative regime, the sign of the lowest exciton band curvature, which rigorously defines J and H-aggregation, is directly tracked by the ratio of the first two vibronic peak intensities. Even in the resonance regime, the vibronic ratio remains a useful tool to evaluate the J or H nature of the system. The theory developed is applied to the reversible H to J-aggregate transformations recently observed in several perylene bisimide systems.

  14. A Study of Impulsive Multiterm Fractional Differential Equations with Single and Multiple Base Points and Applications

    PubMed Central

    Liu, Yuji; Ahmad, Bashir

    2014-01-01

    We discuss the existence and uniqueness of solutions for initial value problems of nonlinear singular multiterm impulsive Caputo type fractional differential equations on the half line. Our study includes the cases for a single base point fractional differential equation as well as multiple base points fractional differential equation. The asymptotic behavior of solutions for the problems is also investigated. We demonstrate the utility of our work by applying the main results to fractional-order logistic models. PMID:24578623

  15. 49 CFR 178.606 - Stacking test.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... calculated based on the specific gravity that will be marked on the packaging. The minimum height of the... between the platens at this time must be recorded as zero deformation. The force A to then be applied must... number of containers that, when stacked, reach a height of 3 meters. s = specific gravity of lading....

  16. 49 CFR 178.606 - Stacking test.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... calculated based on the specific gravity that will be marked on the packaging. The minimum height of the... between the platens at this time must be recorded as zero deformation. The force A to then be applied must... number of containers that, when stacked, reach a height of 3 meters. s = specific gravity of lading....

  17. Thermoacoustic pin stacks. Summary report

    SciTech Connect

    Keolian, R.M.

    1994-07-06

    The construction and testing of a new stack geometry for thermoacoustic engines, called a pin stack, has been started. The stack is at the heart of a class of heat engines that use sound to deliver refrigeration, or use a temperature difference to generate sound. Calculations show that the pin stack should make useful improvements in engine efficiency. About 2000 wires will be hand sewn in a hexagonal lattice between the hot and cold heat exchangers in a sound source using low pressure neon gas between 300 K and 77 K. Thermoacoustics, Refrigeration, Acoustic source, Heat pump.

  18. Stacked insulator induction accelerator gaps

    SciTech Connect

    Houck, T.I.; Westenskow, G.A.; Kim, J.S.; Eylon, S.; Henestroza, E.; Yu, S.S.; Vanecek, D.

    1997-05-01

    Stacked insulators, with alternating layers of insulating material and conducting film, have been shown to support high surface electrical field stresses. We have investigated the application of the stacked insulator technology to the design of induction accelerator modules for the Relativistic-Klystron Two-Beam Accelerator program. The rf properties of the accelerating gaps using stacked insulators, particularly the impedance at frequencies above the beam pipe cutoff frequency, are investigated. Low impedance is critical for Relativistic-Klystron Two-Beam Accelerator applications where a high current, bunched beam is trsnsported through many accelerating gaps. An induction accelerator module designs using a stacked insulator is presented.

  19. 2. RICE THRESHING MILL WITH CHIMNEY STACK. Fire burned on ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    2. RICE THRESHING MILL WITH CHIMNEY STACK. Fire burned on top of water pipe at base of chimney stack and steam went thru pipes to boiler on south side of wall. - Mansfield Plantation, Rice Threshing Mill, U.S. Route 701 vicinity, Georgetown, Georgetown County, SC

  20. On the differentiation matrix for Daubechies-based wavelets on an interval

    NASA Technical Reports Server (NTRS)

    Jameson, Leland

    1993-01-01

    The differentiation matrix for a Daubechies-based wavlet basis defined on an interval will be constructed. It will be shown that the differentiation matrix based on the currently available boundary constructions does not maintain the superconvergence encountered under periodic boundary conditions.

  1. Stacked graphs--geometry & aesthetics.

    PubMed

    Byron, Lee; Wattenberg, Martin

    2008-01-01

    In February 2008, the New York Times published an unusual chart of box office revenues for 7500 movies over 21 years. The chart was based on a similar visualization, developed by the first author, that displayed trends in music listening. This paper describes the design decisions and algorithms behind these graphics, and discusses the reaction on the Web. We suggest that this type of complex layered graph is effective for displaying large data sets to a mass audience. We provide a mathematical analysis of how this layered graph relates to traditional stacked graphs and to techniques such as ThemeRiver, showing how each method is optimizing a different "energy function". Finally, we discuss techniques for coloring and ordering the layers of such graphs. Throughout the paper, we emphasize the interplay between considerations of aesthetics and legibility. PMID:18988970

  2. Phaser-Based Courseware for Ordinary Differential Equations.

    ERIC Educational Resources Information Center

    Zia, Lee l.

    1991-01-01

    Presented are classroom-tested examples of instructional materials (courseware) for ordinary differential equations using the software package PHASER. All of the examples include in-class demonstration techniques and commentaries for instructor use, student homework and laboratory exercises, and suggestions for in-class examination questions. (JJK)

  3. An Analysis of Differential Item Functioning Based on Calculator Type.

    ERIC Educational Resources Information Center

    Schwarz, Richard; Rich, Changhua; Arenson, Ethan; Podrabsky, Tracy; Cook, Gary

    The effect of calculator type on student performance on a mathematics examination was studied. Differential item functioning (DIF) methodology was applied to examine group differences (calculator use) on item performance while conditioning on the relevant ability. Other survey questions were developed to ask students the extent to which they used…

  4. Zigzag stacks and m-regular linear stacks.

    PubMed

    Chen, William Y C; Guo, Qiang-Hui; Sun, Lisa H; Wang, Jian

    2014-12-01

    The contact map of a protein fold is a graph that represents the patterns of contacts in the fold. It is known that the contact map can be decomposed into stacks and queues. RNA secondary structures are special stacks in which the degree of each vertex is at most one and each arc has length of at least two. Waterman and Smith derived a formula for the number of RNA secondary structures of length n with exactly k arcs. Höner zu Siederdissen et al. developed a folding algorithm for extended RNA secondary structures in which each vertex has maximum degree two. An equation for the generating function of extended RNA secondary structures was obtained by Müller and Nebel by using a context-free grammar approach, which leads to an asymptotic formula. In this article, we consider m-regular linear stacks, where each arc has length at least m and the degree of each vertex is bounded by two. Extended RNA secondary structures are exactly 2-regular linear stacks. For any m ≥ 2, we obtain an equation for the generating function of the m-regular linear stacks. For given m, we deduce a recurrence relation and an asymptotic formula for the number of m-regular linear stacks on n vertices. To establish the equation, we use the reduction operation of Chen, Deng, and Du to transform an m-regular linear stack to an m-reduced zigzag (or alternating) stack. Then we find an equation for m-reduced zigzag stacks leading to an equation for m-regular linear stacks. PMID:25455155

  5. Power consumption analysis of priority-based service differentiation scheme for LR-WPANs

    NASA Astrophysics Data System (ADS)

    Kim, Meejoung; Hwang, Eenjun

    2016-06-01

    In this paper, we investigate the effect of service differentiation on the power consumption in contention period of IEEE 802.15.4 sensor networks. Power consumption is analysed for two different service differentiation schemes under non-saturation condition. The two service differentiation schemes are the differentiation by the backoff exponent (BED) and differentiation by the contention window (CWD), which provide multilevel differentiated services in beacon-enabled mode with slotted carrier sense multiple access/collision avoidance (CSMA/CA) algorithm. The analysis is based on the stationary probabilities of a discrete-time Markov chain, which is a model of CSMA/CA describing the state of a head packet of a device. Numerical results show that CWD uses the power more efficiently and performs better in terms of throughput, while BED more differentiates the service.

  6. Role of surface-reaction layer in HBr/fluorocarbon-based plasma with nitrogen addition formed by high-aspect-ratio etching of polycrystalline silicon and SiO2 stacks

    NASA Astrophysics Data System (ADS)

    Iwase, Taku; Matsui, Miyako; Yokogawa, Kenetsu; Arase, Takao; Mori, Masahito

    2016-06-01

    The etching of polycrystalline silicon (poly-Si)/SiO2 stacks by using VHF plasma was studied for three-dimensional NAND fabrication. One critical goal is achieving both a vertical profile and high throughput for multiple-stack etching. While the conventional process consists of multiple steps for each stacked layer, in this study, HBr/fluorocarbon-based gas chemistry was investigated to achieve a single-step etching process to reduce process time. By analyzing the dependence on wafer temperature, we improved both the etching profile and rate at a low temperature. The etching mechanism is examined considering the composition of the surface reaction layer. X-ray photoelectron spectroscopy (XPS) analysis revealed that the adsorption of N–H and Br was enhanced at a low temperature, resulting in a reduced carbon-based-polymer thickness and enhanced Si etching. Finally, a vertical profile was obtained as a result of the formation of a thin and reactive surface-reaction layer at a low wafer temperature.

  7. Assessing Elementary Algebra with STACK

    ERIC Educational Resources Information Center

    Sangwin, Christopher J.

    2007-01-01

    This paper concerns computer aided assessment (CAA) of mathematics in which a computer algebra system (CAS) is used to help assess students' responses to elementary algebra questions. Using a methodology of documentary analysis, we examine what is taught in elementary algebra. The STACK CAA system, http://www.stack.bham.ac.uk/, which uses the CAS…

  8. 49 CFR 178.815 - Stacking test.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 49 Transportation 3 2013-10-01 2013-10-01 false Stacking test. 178.815 Section 178.815... Stacking test. (a) General. The stacking test must be conducted for the qualification of all IBC design types intended to be stacked. (b) Special preparation for the stacking test. (1) All IBCs...

  9. The dispersion in accumulation at InGaAs-based metal/oxide/semiconductor gate stacks with a bi-layered dielectric structure

    NASA Astrophysics Data System (ADS)

    Krylov, Igor; Ritter, Dan; Eizenberg, Moshe

    2015-08-01

    InGaAs gate stacks comprising the moderate dielectric constant (k) Al2O3 have a significantly lower dispersion in accumulation in comparison to stacks with the high-k HfO2 of the same physical thickness. As a result, a HfO2/Al2O3 bi-layer structure seems attractive in terms of both high effective dielectric constant and low dispersion in accumulation. The influence of Al2O3 thickness on the dispersion was investigated in metal/HfO2/Al2O3/InGaAs gate stacks with a fixed overall dielectric thickness. An effective suppression of the dispersion with the increase of the Al2O3 thickness was observed. However, the Al2O3 thickness required for passivation of the dispersion in accumulation was significantly higher in comparison to both the border traps related tunneling distance in Al2O3 and the minimal thickness required for the Al2O3/InGaAs band offset stabilization. The phenomenon can be explained by the lower dielectric constant of Al2O3 film (compared to the subsequently deposited HfO2 layer), where Al2O3 dielectric constant dependence on the film thickness enhances the dispersion intensity. As a result, the guidelines for the passivation layer engineering are: maximization of both majority carriers band offsets and of the dielectric constant of the passivation layer.

  10. Multistage Force Amplification of Piezoelectric Stacks

    NASA Technical Reports Server (NTRS)

    Xu, Tian-Bing (Inventor); Siochi, Emilie J. (Inventor); Zuo, Lei (Inventor); Jiang, Xiaoning (Inventor); Kang, Jin Ho (Inventor)

    2015-01-01

    Embodiments of the disclosure include an apparatus and methods for using a piezoelectric device, that includes an outer flextensional casing, a first cell and a last cell serially coupled to each other and coupled to the outer flextensional casing such that each cell having a flextensional cell structure and each cell receives an input force and provides an output force that is amplified based on the input force. The apparatus further includes a piezoelectric stack coupled to each cell such that the piezoelectric stack of each cell provides piezoelectric energy based on the output force for each cell. Further, the last cell receives an input force that is the output force from the first cell and the last cell provides an output apparatus force In addition, the piezoelectric energy harvested is based on the output apparatus force. Moreover, the apparatus provides displacement based on the output apparatus force.

  11. Stacking for machine learning redshifts applied to SDSS galaxies

    NASA Astrophysics Data System (ADS)

    Zitlau, Roman; Hoyle, Ben; Paech, Kerstin; Weller, Jochen; Rau, Markus Michael; Seitz, Stella

    2016-08-01

    We present an analysis of a general machine learning technique called 'stacking' for the estimation of photometric redshifts. Stacking techniques can feed the photometric redshift estimate, as output by a base algorithm, back into the same algorithm as an additional input feature in a subsequent learning round. We shown how all tested base algorithms benefit from at least one additional stacking round (or layer). To demonstrate the benefit of stacking, we apply the method to both unsupervised machine learning techniques based on self-organising maps (SOMs), and supervised machine learning methods based on decision trees. We explore a range of stacking architectures, such as the number of layers and the number of base learners per layer. Finally we explore the effectiveness of stacking even when using a successful algorithm such as AdaBoost. We observe a significant improvement of between 1.9% and 21% on all computed metrics when stacking is applied to weak learners (such as SOMs and decision trees). When applied to strong learning algorithms (such as AdaBoost) the ratio of improvement shrinks, but still remains positive and is between 0.4% and 2.5% for the explored metrics and comes at almost no additional computational cost.

  12. Stacking for machine learning redshifts applied to SDSS galaxies

    NASA Astrophysics Data System (ADS)

    Zitlau, Roman; Hoyle, Ben; Paech, Kerstin; Weller, Jochen; Rau, Markus Michael; Seitz, Stella

    2016-08-01

    We present an analysis of a general machine learning technique called `stacking' for the estimation of photometric redshifts. Stacking techniques can feed the photometric redshift estimate, as output by a base algorithm, back into the same algorithm as an additional input feature in a subsequent learning round. We show how all tested base algorithms benefit from at least one additional stacking round (or layer). To demonstrate the benefit of stacking, we apply the method to both unsupervised machine learning techniques based on self-organizing maps (SOMs), and supervised machine learning methods based on decision trees. We explore a range of stacking architectures, such as the number of layers and the number of base learners per layer. Finally we explore the effectiveness of stacking even when using a successful algorithm such as AdaBoost. We observe a significant improvement of between 1.9 per cent and 21 per cent on all computed metrics when stacking is applied to weak learners (such as SOMs and decision trees). When applied to strong learning algorithms (such as AdaBoost) the ratio of improvement shrinks, but still remains positive and is between 0.4 per cent and 2.5 per cent for the explored metrics and comes at almost no additional computational cost.

  13. Deposition temperature dependence of material and Si surface passivation properties of O{sub 3}-based atomic layer deposited Al{sub 2}O{sub 3}-based films and stacks

    SciTech Connect

    Bordihn, Stefan; Mertens, Verena; Müller, Jörg W.; Kessels, W. M. M.

    2014-01-15

    The material composition and the Si surface passivation of aluminum oxide (Al{sub 2}O{sub 3}) films prepared by atomic layer deposition using Al(CH{sub 3}){sub 3} and O{sub 3} as precursors were investigated for deposition temperatures (T{sub Dep}) between 200 °C and 500 °C. The growth per cycle decreased with increasing deposition temperature due to a lower Al deposition rate. In contrast the material composition was hardly affected except for the hydrogen concentration, which decreased from [H] = 3 at. % at 200 °C to [H] < 0.5 at. % at 400 °C and 500 °C. The surface passivation performance was investigated after annealing at 300 °C–450 °C and also after firing steps in the typical temperature range of 800 °C–925 °C. A similar high level of the surface passivation performance, i.e., surface recombination velocity values <10 cm/s, was obtained after annealing and firing. Investigations of Al{sub 2}O{sub 3}/SiN{sub x} stacks complemented the work and revealed similar levels of surface passivation as single-layer Al{sub 2}O{sub 3} films, both for the chemical and field-effect passivation. The fixed charge density in the Al{sub 2}O{sub 3}/SiN{sub x} stacks, reflecting the field-effect passivation, was reduced by one order of magnitude from 3·10{sup 12} cm{sup −2} to 3·10{sup 11} cm{sup −2} when T{sub Dep} was increased from 300 °C to 500 °C. The level of the chemical passivation changed as well, but the total level of the surface passivation was hardly affected by the value of T{sub Dep}. When firing films prepared at of low T{sub Dep}, blistering of the films occurred and this strongly reduced the surface passivation. These results presented in this work demonstrate that a high level of surface passivation can be achieved for Al{sub 2}O{sub 3}-based films and stacks over a wide range of conditions when the combination of deposition temperature and annealing or firing temperature is carefully chosen.

  14. An Introduction to Differentials Based on Hyperreal Numbers and Infinite Microscopes

    ERIC Educational Resources Information Center

    Henry, Valerie

    2010-01-01

    In this article, we propose to introduce the differential of a function through a non-classical way, lying on hyperreals and infinite microscopes. This approach is based on the developments of nonstandard analysis, wants to be more intuitive than the classical one and tries to emphasize the functional and geometric aspects of the differential. In…

  15. A Comparison of Function-Based Differential Reinforcement Interventions for Children Engaging in Disruptive Classroom Behavior

    ERIC Educational Resources Information Center

    LeGray, Matthew W.; Dufrene, Brad A.; Sterling-Turner, Heather; Olmi, D. Joe; Bellone, Katherine

    2010-01-01

    This study provides a direct comparison of differential reinforcement of other behavior (DRO) and differential reinforcement of alternative behavior (DRA). Participants included three children in center-based classrooms referred for functional assessments due to disruptive classroom behavior. Functional assessments included interviews and brief…

  16. When is stacking confusing? The impact of confusion on stacking in deep H I galaxy surveys

    NASA Astrophysics Data System (ADS)

    Jones, Michael G.; Haynes, Martha P.; Giovanelli, Riccardo; Papastergis, Emmanouil

    2016-01-01

    We present an analytic model to predict the H I mass contributed by confused sources to a stacked spectrum in a generic H I survey. Based on the ALFALFA (Arecibo Legacy Fast ALFA) correlation function, this model is in agreement with the estimates of confusion present in stacked Parkes telescope data, and was used to predict how confusion will limit stacking in the deepest Square Kilometre Array precursor H I surveys. Stacking with LADUMA (Looking At the Distant Universe with MeerKAT) and DINGO UDEEP (Deep Investigation of Neutral Gas Origins - Ultra Deep) data will only be mildly impacted by confusion if their target synthesized beam size of 10 arcsec can be achieved. Any beam size significantly above this will result in stacks that contain a mass in confused sources that is comparable to (or greater than) that which is detectable via stacking, at all redshifts. CHILES (COSMOS H I Large Extragalactic Survey) 5 arcsec resolution is more than adequate to prevent confusion influencing stacking of its data, throughout its bandpass range. FAST (Five hundred metre Aperture Spherical Telescope) will be the most impeded by confusion, with H I surveys likely becoming heavily confused much beyond z = 0.1. The largest uncertainties in our model are the redshift evolution of the H I density of the Universe and the H I correlation function. However, we argue that the two idealized cases we adopt should bracket the true evolution, and the qualitative conclusions are unchanged regardless of the model choice. The profile shape of the signal due to confusion (in the absence of any detection) was also modelled, revealing that it can take the form of a double Gaussian with a narrow and wide component.

  17. Stacks in canonical RNA pseudoknot structures.

    PubMed

    Han, Hillary S W; Reidys, Christian M

    2009-05-01

    In this paper we study the distribution of stacks/loops in k-non-crossing, tau-canonical RNA pseudoknot structures (k,tau-structures). Here, an RNA structure is called k-non-crossing if it has no more than k-1 mutually crossing arcs and tau-canonical if each arc is contained in a stack of length at least tau. Based on the ordinary generating function of k,tau-structures [G. Ma, C.M. Reidys, Canonical RNA pseudoknot structures, J. Comput. Biol. 15 (10) (2008) 1257] we derive the bivariate generating function T(k, tau)(x, u) = Sigma(n>or=0)Sigma(0stacks and study its singularities. We show that for a specific parametrization of the variable u, T(k, tau)(x, u) exhibits a unique, dominant singularity. The particular shift of this singularity parametrized by u implies a central limit theorem for the distribution of stack-numbers. Our results are of importance for understanding the 'language' of minimum-free energy RNA pseudoknot structures, generated by computer folding algorithms. PMID:19402214

  18. Absolute Position Sensing Based on a Robust Differential Capacitive Sensor with a Grounded Shield Window

    PubMed Central

    Bai, Yang; Lu, Yunfeng; Hu, Pengcheng; Wang, Gang; Xu, Jinxin; Zeng, Tao; Li, Zhengkun; Zhang, Zhonghua; Tan, Jiubin

    2016-01-01

    A simple differential capacitive sensor is provided in this paper to measure the absolute positions of length measuring systems. By utilizing a shield window inside the differential capacitor, the measurement range and linearity range of the sensor can reach several millimeters. What is more interesting is that this differential capacitive sensor is only sensitive to one translational degree of freedom (DOF) movement, and immune to the vibration along the other two translational DOFs. In the experiment, we used a novel circuit based on an AC capacitance bridge to directly measure the differential capacitance value. The experimental result shows that this differential capacitive sensor has a sensitivity of 2 × 10−4 pF/μm with 0.08 μm resolution. The measurement range of this differential capacitive sensor is 6 mm, and the linearity error are less than 0.01% over the whole absolute position measurement range. PMID:27187393

  19. Absolute Position Sensing Based on a Robust Differential Capacitive Sensor with a Grounded Shield Window.

    PubMed

    Bai, Yang; Lu, Yunfeng; Hu, Pengcheng; Wang, Gang; Xu, Jinxin; Zeng, Tao; Li, Zhengkun; Zhang, Zhonghua; Tan, Jiubin

    2016-01-01

    A simple differential capacitive sensor is provided in this paper to measure the absolute positions of length measuring systems. By utilizing a shield window inside the differential capacitor, the measurement range and linearity range of the sensor can reach several millimeters. What is more interesting is that this differential capacitive sensor is only sensitive to one translational degree of freedom (DOF) movement, and immune to the vibration along the other two translational DOFs. In the experiment, we used a novel circuit based on an AC capacitance bridge to directly measure the differential capacitance value. The experimental result shows that this differential capacitive sensor has a sensitivity of 2 × 10(-4) pF/μm with 0.08 μm resolution. The measurement range of this differential capacitive sensor is 6 mm, and the linearity error are less than 0.01% over the whole absolute position measurement range. PMID:27187393

  20. Ribosomes in a Stacked Array

    PubMed Central

    Yamashita, Yui; Kadokura, Yoshitomo; Sotta, Naoyuki; Fujiwara, Toru; Takigawa, Ichigaku; Satake, Akiko; Onouchi, Hitoshi; Naito, Satoshi

    2014-01-01

    Expression of CGS1, which codes for an enzyme of methionine biosynthesis, is feedback-regulated by mRNA degradation in response to S-adenosyl-l-methionine (AdoMet). In vitro studies revealed that AdoMet induces translation arrest at Ser-94, upon which several ribosomes stack behind the arrested one, and mRNA degradation occurs at multiple sites that presumably correspond to individual ribosomes in a stacked array. Despite the significant contribution of stacked ribosomes to inducing mRNA degradation, little is known about the ribosomes in the stacked array. Here, we assigned the peptidyl-tRNA species of the stacked second and third ribosomes to their respective codons and showed that they are arranged at nine-codon intervals behind the Ser-94 codon, indicating tight stacking. Puromycin reacts with peptidyl-tRNA in the P-site, releasing the nascent peptide as peptidyl-puromycin. This reaction is used to monitor the activity of the peptidyltransferase center (PTC) in arrested ribosomes. Puromycin reaction of peptidyl-tRNA on the AdoMet-arrested ribosome, which is stalled at the pre-translocation step, was slow. This limited reactivity can be attributed to the peptidyl-tRNA occupying the A-site at this step rather than to suppression of PTC activity. In contrast, puromycin reactions of peptidyl-tRNA with the stacked second and third ribosomes were slow but were not as slow as pre-translocation step ribosomes. We propose that the anticodon end of peptidyl-tRNA resides in the A-site of the stacked ribosomes and that the stacked ribosomes are stalled at an early step of translocation, possibly at the P/E hybrid state. PMID:24652291

  1. The discrete variational derivative method based on discrete differential forms

    NASA Astrophysics Data System (ADS)

    Yaguchi, Takaharu; Matsuo, Takayasu; Sugihara, Masaaki

    2012-05-01

    As is well known, for PDEs that enjoy a conservation or dissipation property, numerical schemes that inherit this property are often advantageous in that the schemes are fairly stable and give qualitatively better numerical solutions in practice. Lately, Furihata and Matsuo have developed the so-called “discrete variational derivative method” that automatically constructs energy preserving or dissipative finite difference schemes. Although this method was originally developed on uniform meshes, the use of non-uniform meshes is of importance for multi-dimensional problems. On the other hand, the theories of discrete differential forms have received much attention recently. These theories provide a discrete analogue of the vector calculus on general meshes. In this paper, we show that the discrete variational derivative method and the discrete differential forms by Bochev and Hyman can be combined. Applications to the Cahn-Hilliard equation and the Klein-Gordon equation on triangular meshes are provided as demonstrations. We also show that the schemes for these equations are H1-stable under some assumptions. In particular, one for the nonlinear Klein-Gordon equation is obtained by combination of the energy conservation property and the discrete Poincaré inequality, which are the temporal and spacial structures that are preserved by the above methods.

  2. Development of internal reforming carbonate fuel cell stack technology

    SciTech Connect

    Farooque, M.

    1990-10-01

    Activities under this contract focused on the development of a coal-fueled carbonate fuel cell system design and the stack technology consistent with the system design. The overall contract effort was divided into three phases. The first phase, completed in January 1988, provided carbonate fuel cell component scale-up from the 1ft{sup 2} size to the commercial 4ft{sup 2} size. The second phase of the program provided the coal-fueled carbonate fuel cell system (CGCFC) conceptual design and carried out initial research and development needs of the CGCFC system. The final phase of the program emphasized stack height scale-up and improvement of stack life. The results of the second and third phases are included in this report. Program activities under Phase 2 and 3 were designed to address several key development areas to prepare the carbonate fuel cell system, particularly the coal-fueled CFC power plant, for commercialization in late 1990's. The issues addressed include: Coal-Gas Related Considerations; Cell and Stack Technology Improvement; Carbonate Fuel Cell Stack Design Development; Stack Tests for Design Verification; Full-Size Stack Design; Test Facility Development; Carbonate Fuel Cell Stack Cost Assessment; and Coal-Fueled Carbonate Fuel Cell System Design. All the major program objectives in each of the topical areas were successfully achieved. This report is organized along the above-mentioned topical areas. Each topical area has been processed separately for inclusion on the data base.

  3. Pi-Stack Engineering of Semiconducting Perylene Tetracarboxylic Derivatives

    NASA Astrophysics Data System (ADS)

    Xue, Chenming

    D crystalline intra-layer order. Chapter 4, PDI pi-stacking order has been engineered in the crystalline phase. By introducing two structuring factors, a series of crystalline PDIs with finely tunable PDI pi-stacking order was obtained. The crystalline PDIs with exceptionally red-shifted lambda max were obtained. Several PDIs possess lambdamax values greater than any literature-reported ones. These materials can be excellent candidates in solar cell devices. In Chapter 5, new chiral main-chain PDI containing polymers were synthesized. These polymers can form intramolecular helical pi-stacks in diluted solutions. In Chapter 6, a novel synthetic route leading to unsymmetrical perylene tetracarboxylic derivatives has been developed. Based on this synthetic method, more perylene tetracarboxylic derivatives can be generated. In my research in this thesis, not only synthesis is an important part because it provides novel materials, but the characterization is critical as well. Infrared spectroscopy, Ultra-violet, fluorescence, differential scanning calorimetry, circular dichroism, polarized light microscopy, gel permeation chromatography, X-ray diffraction including both small angle and wide angle have been used. Additionally, molecular simulation is also very useful in design and obtaining details in molecular packing. Overall, the achievements in this research contribute a considerable advance in the field of generating semiconducting perylene tetracarboxylic derivatives which have versatile potential applications such as in solar cell devices, organic field effect transistors and light emitting diodes.

  4. A TUNABLE DIODE LASER STACK MONITOR FOR SULFURIC ACID VAPOR

    EPA Science Inventory

    A field prototype instrument for continuous in-situ monitoring of sulfuric acid vapor in industrial smoke stacks has been developed. The method of detection is dual wavelength differential absorption in the infrared. Two tunable diode lasers are locked to two specific frequencies...

  5. Low-cost bidirectional selector based on Ti/TiO2/HfO2/TiO2/Ti stack for bipolar RRAM arrays

    NASA Astrophysics Data System (ADS)

    Li, Yingtao; Li, Rongrong; Yuan, Peng; Gao, Xiaoping; Chen, Enzi

    2015-12-01

    In this paper, a low-cost Ti/TiO2/HfO2/TiO2/Ti stack structure is proposed as a selector for bipolar resistive random access memory (RRAM) cross-bar array applications. We demonstrate reproducible resistive switching characteristics with significant nonlinearity and good uniformity in the one selector and one resistor (1S1R) structure device that integrate the bidirectional selector with a bipolar Pt/Ti/HfO2/Pt RRAM device. These results provide a good point of reference for evaluating the potential low-cost applications in bipolar RRAM cross-bar array.

  6. 29 CFR 1620.20 - Pay differentials claimed to be based on extra duties.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 29 Labor 4 2012-07-01 2012-07-01 false Pay differentials claimed to be based on extra duties. 1620.20 Section 1620.20 Labor Regulations Relating to Labor (Continued) EQUAL EMPLOYMENT OPPORTUNITY COMMISSION THE EQUAL PAY ACT § 1620.20 Pay differentials claimed to be based on extra duties. Additional duties may not be a defense to the payment...

  7. Selecting key genes associated with osteosarcoma based on a differential expression network.

    PubMed

    Wang, Y B; Jia, N; Xu, C M; Zhao, L; Zhao, Y; Wang, X; Jia, T H

    2015-01-01

    Despite recent advances in osteosarcoma diagnosis and therapy, much remains unclear about the molecular mechanisms involved in the disorder, and the discovery of novel drug-targeted genes is essential. We explored the potential molecular mechanisms and target genes involved in the development and progression of osteosarcoma. First, we identified the differentially expressed genes in osteosarcoma patients and matching normal controls. We then constructed a differential expression network based on differential and non-differential interactions. Pathway-enrichment analysis was performed based on the nodes contained in the main differential expression network. Centrality analysis was used to select hub genes that may play vital roles in the progression of human osteosarcoma. Our research revealed a total of 176 differentially expressed genes including 82 upregulated and 94 downregulated genes. A differential expression network was constructed that included 992 gene pairs (1043 nodes). Pathway-enrichment analysis indicated that the nodes in the differential expression network were mainly enriched in several pathways such as those involved in cancer, cell cycle, ubiquitin-mediated proteolysis, DNA replication, ribosomes, T-cell receptor signaling, spliceosomes, neurotrophin signaling, oxidative phosphorylation, and tight junctions. Six hub genes (APP, UBC, CAND1, RPA, YWHAG, and NEDD8) were discovered; of these, two genes (UBC and RPA) were also found to be disease genes. Our study predicted that UBC and RPA had potential as target genes for the diagnosis and treatment of osteosarcoma. PMID:26782416

  8. Attachment-Based Family Therapy: "Adherence" and Differentiation

    ERIC Educational Resources Information Center

    Diamond, Gary M.; Diamond, Guy S.; Hogue, Aaron

    2007-01-01

    This study examined the fidelity of attachment-based family therapy (ABFT) for depressed adolescents. Trained observers used the therapist behavior rating scale (3rd version) to code therapist behaviors in 45 sessions of ABFT and 45 sessions each from two empirically based treatments for adolescent substance abusers: multidimensional family…

  9. Computations of Wall Distances Based on Differential Equations

    NASA Technical Reports Server (NTRS)

    Tucker, Paul G.; Rumsey, Chris L.; Spalart, Philippe R.; Bartels, Robert E.; Biedron, Robert T.

    2004-01-01

    The use of differential equations such as Eikonal, Hamilton-Jacobi and Poisson for the economical calculation of the nearest wall distance d, which is needed by some turbulence models, is explored. Modifications that could palliate some turbulence-modeling anomalies are also discussed. Economy is of especial value for deforming/adaptive grid problems. For these, ideally, d is repeatedly computed. It is shown that the Eikonal and Hamilton-Jacobi equations can be easy to implement when written in implicit (or iterated) advection and advection-diffusion equation analogous forms, respectively. These, like the Poisson Laplacian term, are commonly occurring in CFD solvers, allowing the re-use of efficient algorithms and code components. The use of the NASA CFL3D CFD program to solve the implicit Eikonal and Hamilton-Jacobi equations is explored. The re-formulated d equations are easy to implement, and are found to have robust convergence. For accurate Eikonal solutions, upwind metric differences are required. The Poisson approach is also found effective, and easiest to implement. Modified distances are not found to affect global outputs such as lift and drag significantly, at least in common situations such as airfoil flows.

  10. Barrier RF stacking at Fermilab

    SciTech Connect

    Weiren Chou et al.

    2003-06-04

    A key issue to upgrade the luminosity of the Tevatron Run2 program and to meet the neutrino requirement of the NuMI experiment at Fermilab is to increase the proton intensity on the target. This paper introduces a new scheme to double the number of protons from the Main Injector (MI) to the pbar production target (Run2) and to the pion production target (NuMI). It is based on the fact that the MI momentum acceptance is about a factor of four larger than the momentum spread of the Booster beam. Two RF barriers--one fixed, another moving--are employed to confine the proton beam. The Booster beams are injected off-momentum into the MI and are continuously reflected and compressed by the two barriers. Calculations and simulations show that this scheme could work provided that the Booster beam momentum spread can be kept under control. Compared with slip stacking, a main advantage of this new method is small beam loading effect thanks to the low peak beam current. The RF barriers can be generated by an inductive device, which uses nanocrystal magnet alloy (Finemet) cores and fast high voltage MOSFET switches. This device has been designed and fabricated by a Fermilab-KEK-Caltech team. The first bench test was successful. Beam experiments are being planned.