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Sample records for dynamic speciation analysis

  1. The speciation of behavior analysis

    PubMed Central

    Rider, David P.

    1991-01-01

    The relationship between the Experimental Analysis of Behavior (EAB) and Applied Behavior Analysis (ABA) has been the subject of several editorials and commentaries in recent years. Various authors have argued that researchers in these two fields (a) have become isolated from each other, (b) face different requirements for survival in their respective fields, and (c) possess different skills to meet those requirements. The present paper provides an allegory for the relationship between EAB and ABA in terms of biological speciation. The conditions that have changed the relationship between EAB and ABA are parallel to those responsible for biological speciation: (a) isolation of some members of a species from the rest of the population, (b) different contingencies of survival for members of the two separate groups, and (c) divergence in the adaptive characteristics displayed by the two groups. When members of two different groups, descendants of common ancestors, no longer are capable of producing viable offspring by interbreeding, the different groups then represent different species. To the extent that members of the EAB group and members of the ABA group interact with each other only trivially, they each represent allegorically different species. Changes in the relationship between EAB and ABA are part of a natural process that takes place in many other sciences, and the course of that process can hardly be reversed by us. PMID:22478096

  2. Biosensor for metal analysis and speciation

    DOEpatents

    Aiken, Abigail M.; Peyton, Brent M.; Apel, William A.; Petersen, James N.

    2007-01-30

    A biosensor for metal analysis and speciation is disclosed. The biosensor comprises an electron carrier immobilized to a surface of an electrode and a layer of an immobilized enzyme adjacent to the electrode. The immobilized enzyme comprises an enzyme having biological activity inhibited by a metal to be detected by the biosensor.

  3. ARSENIC SPECIATION ANALYSIS IN HUMAN SALIVA

    EPA Science Inventory

    Background: Determination of arsenic species in human saliva is potentially useful for biomonitoring of human exposure to arsenic and for studying arsenic metabolism. However, there is no report on the speciation analysis of arsenic in saliva. Methods: Arsenic species in saliva ...

  4. Mercury speciation analysis in terrestrial animal tissues.

    PubMed

    Berzas Nevado, J J; Rodríguez Martín-Doimeadios, R C; Guzmán Bernardo, F J; Rodríguez Fariñas, N; Patiño Ropero, M J

    2012-09-15

    No previous analytical procedures are available and validated for mercury speciation analysis in terrestrial animal tissues. This analysis is a difficult task both because the expected concentrations are low, since important accumulation process are not likely to occur, and also because there are not commercially available certified reference material. Thus, an analytical methodology has been developed and validated for mercury speciation for the specific case of terrestrial animal tissues. The proposed method is based on the quantitative extraction of the species by closed-vessel microwave assisted heating with an alkaline reagent, followed by ethylation. The ethylated derivatives were then submitted to head-space solid phase microextraction with a 100 μm polidimethylsiloxane-coated fiber, and desorbed onto a gas chromatograph coupled to atomic fluorescence detection via pyrolysis unit (HS-SPME-GC-pyro-AFS). Procedural detection limits were 31.8 ng g(-1) and 52.5 ng g(-1) for CH(3)Hg(+) and Hg(2+), respectively, for liver and 35.3 ng g(-1) and 58.1 ng g(-1) for CH(3)Hg(+) and Hg(2+), respectively, for kidney. These limits of detection are 5.5 and 6 times better than the obtained without solid phase microextraction for CH(3)Hg(+) and Hg(2+), respectively. The methodology was found linear up to 120 μg L(-1) and reproducible from one day to the following. It was validated with certified reference materials NCS ZC 71001 (beef liver) and BCR No 186 (pig kidney) for total mercury, calculated as the sum of species, and with spiked red deer liver and kidney for speciation. Finally, it was applied to the analysis of samples of red deer liver, red deer kidney and wild boar kidney coming from the Almadén's mercury mining area (Ciudad Real, Spain), the longest and largest producer of mercury in the world until its closure in 2002. PMID:22967634

  5. Metal speciation dynamics in monodisperse soft colloidal ligand suspensions.

    PubMed

    Duval, Jérôme F L; Pinheiro, José P; van Leeuwen, Herman P

    2008-08-01

    A comprehensive theory is presented for the dynamics of metal speciation in monodisperse suspensions of soft spherical particles characterized by a hard core and an ion-permeable shell layer where ligands L are localized. The heterogeneity in the binding site distribution leads to complex formation/dissociation rate constants (denoted as k a (*) and k d (*), respectively) that may substantially differ from their homogeneous solution counterparts (k a and k d). The peculiarities of metal speciation dynamics in soft colloidal ligand dispersions result from the coupling between diffusive transport of free-metal ions M within and around the soft surface layer and the kinetics of ML complex formation/dissociation within the shell component of the particle. The relationship between k a,d (*) and k a,d is derived from the numerical evaluation of the spatial, time-dependent distributions of free and bound metal. For that purpose, the corresponding diffusion equations corrected by the appropriate chemical source term are solved in spherical geometry using a Kuwabara-cell-type representation where the intercellular distance is determined by the volume fraction of soft particles. The numerical study is supported by analytical approaches valid in the short time domain. For dilute dispersions of soft ligand particles, it is shown that the balance between free-metal diffusion within and outside of the shell and the kinetic conversion of M into ML within the particular soft surface layer rapidly establishes a quasi-steady-state regime. For sufficiently long time, chemical equilibrium between the free and bound metal is reached within the reactive particle layer, which corresponds to the true steady-state regime for the system investigated. The analysis reported covers the limiting cases of rigid particles where binding sites are located at the very surface of the particle core (e.g., functionalized latex colloids) and polymeric particles that are devoid of a hard core (e

  6. Speciation dynamics and biogeography of Neotropical spiral gingers (Costaceae).

    PubMed

    André, Thiago; Salzman, Shayla; Wendt, Tânia; Specht, Chelsea D

    2016-10-01

    Species can arise via the divisive effects of allopatry as well as due to ecological and/or reproductive character displacement within sympatric populations. Two separate lineages of Costaceae are native to the Neotropics; an early-diverging clade endemic to South America (consisting of ca. 16 species in the genera Monocostus, Dimerocostus and Chamaecostus); and the Neotropical Costus clade (ca. 50 species), a diverse assemblage of understory herbs comprising nearly half of total familial species richness. We use a robust dated molecular phylogeny containing most of currently known species to inform macroevolutionary reconstructions, enabling us to examine the context of speciation in Neotropical lineages. Analyses of speciation rate revealed a significant variation among clades, with a rate shift at the most recent common ancestor of the Neotropical Costus clade. There is an overall predominance of allopatric speciation in the South American clade, as most species display little range overlap. In contrast, sympatry is much higher within the Neotropical Costus clade, independent of node age. Our results show that speciation dynamics during the history of Costaceae is strongly heterogeneous, and we suggest that the Costus radiation in the Neotropics arose at varied geographic contexts. PMID:27400627

  7. Density-dependent speciation alters the structure and dynamics of neutral communities.

    PubMed

    Wang, Shaopeng; Chen, Anping; Pacala, Stephen W; Fang, Jingyun

    2015-05-01

    The neutral theory of biodiversity (NTB) provides an individual-based modeling framework to study eco-evolutionary dynamics. Previous NTB models usually assumed the same per capita rate of speciation across lineages. However, population dynamics may induce macroevolutionary feedbacks that can result in variable per capita speciation rates across lineages. In this paper, with analytical and simulation approaches, we explore how different scenarios of density-dependent speciation may impact the diversity and phylogenetic patterns of neutral communities, and compare the results to predictions of the original NTB model with an invariant speciation rate. Our results show that positive per capita speciation rate-abundance relationships could result in higher species richness and evenness, enhanced stability (evidenced by higher post-disturbance recovery rates and lower temporal variability in species diversity), and higher imbalance in phylogenetic trees. The opposite patterns are predicted when per capita speciation rates decrease with abundance. Particularly, strong negative speciation rate-abundance relationships can generate a positive correlation between phylogenetic age and abundance, which has been observed in Panamanian tree species. Our findings demonstrate the importance of eco-evolutionary feedbacks for understanding long-term diversity and phylogenetic patterns in ecological communities. PMID:25701450

  8. Speciation reversal and biodiversity dynamics with hybridization in changing environments.

    PubMed

    Seehausen, Ole; Takimoto, Gaku; Roy, Denis; Jokela, Jukka

    2008-01-01

    A considerable fraction of the world's biodiversity is of recent evolutionary origin and has evolved as a by-product of, and is maintained by, divergent adaptation in heterogeneous environments. Conservationists have paid attention to genetic homogenization caused by human-induced translocations (e.g. biological invasions and stocking), and to the importance of environmental heterogeneity for the ecological coexistence of species. However, far less attention has been paid to the consequences of loss of environmental heterogeneity to the genetic coexistence of sympatric species. Our review of empirical observations and our theoretical considerations on the causes and consequences of interspecific hybridization suggest that a loss of environmental heterogeneity causes a loss of biodiversity through increased genetic admixture, effectively reversing speciation. Loss of heterogeneity relaxes divergent selection and removes ecological barriers to gene flow between divergently adapted species, promoting interspecific introgressive hybridization. Since heterogeneity of natural environments is rapidly deteriorating in most biomes, the evolutionary ecology of speciation reversal ought to be fully integrated into conservation biology. PMID:18034800

  9. Comparison of gas chromatographic hyphenated techniques for mercury speciation analysis.

    PubMed

    Nevado, J J Berzas; Martín-Doimeadios, R C Rodríguez; Krupp, E M; Bernardo, F J Guzmán; Fariñas, N Rodríguez; Moreno, M Jiménez; Wallace, D; Ropero, M J Patiño

    2011-07-15

    In this study, we evaluate advantages and disadvantages of three hyphenated techniques for mercury speciation analysis in different sample matrices using gas chromatography (GC) with mass spectrometry (GC-MS), inductively coupled plasma mass spectrometry (GC-ICP-MS) and pyrolysis atomic fluorescence (GC-pyro-AFS) detection. Aqueous ethylation with NaBEt(4) was required in all cases. All systems were validated with respect to precision, with repeatability and reproducibility <5% RSD, confirmed by the Snedecor F-test. All methods proved to be robust according to a Plackett-Burnham design for 7 factors and 15 experiments, and calculations were carried out using the procedures described by Youden and Steiner. In order to evaluate accuracy, certified reference materials (DORM-2 and DOLT-3) were analyzed after closed-vessel microwave extraction with tetramethylammonium hydroxide (TMAH). No statistically significant differences were found to the certified values (p=0.05). The suitability for water samples analysis with different organic matter and chloride contents was evaluated by recovery experiments in synthetic spiked waters. Absolute detection and quantification limits were in the range of 2-6 pg for GC-pyro-AFS, 1-4 pg for GC-MS, with 0.05-0.21 pg for GC-ICP-MS showing the best limits of detection for the three systems employed. However, all systems are sufficiently sensitive for mercury speciation in environmental samples, with GC-MS and GC-ICP-MS offering isotope analysis capabilities for the use of species-specific isotope dilution analysis, and GC-pyro-AFS being the most cost effective alternative. PMID:21641604

  10. Hybrid flow system for automatic dynamic fractionation and speciation of inorganic arsenic in environmental solids.

    PubMed

    Zhang, Yanlin; Miró, Manuel; Kolev, Spas D

    2015-03-01

    An integrated flow analysis system and protocol are proposed for the first time for automatic dynamic flow-through fractionation of inorganic arsenic (arsenite and arsenate) in environmental solids in combination with its real-time speciation. Four extractants (i.e., (1) 0.05 M ammonium sulfate, (2) 0.05 M ammonium dihydrogen phosphate, (3) 0.2 M ammonium oxalate, and (4) a mixture of 0.2 M ammonium oxalate and 0.1 M ascorbic acid at 96 °C) are applied sequentially to the sample to measure bioaccessible inorganic arsenic associated with (1) nonspecifically sorbed phases, (2) specifically sorbed phases, (3) amorphous plus poorly crystalline hydrous oxides of iron and aluminum, and (4) well-crystallized hydrous oxides of Fe and Al, respectively. The kinetic extraction profiles of arsenite and total inorganic arsenic are obtained for each extractant by automatic collection of a given number of its aliquots (subfractions) exposed to the solid sample. Arsenite and total inorganic arsenic in each subfraction are converted to arsine sequentially by hydride generation at pH 4.50 and in 1.14 M hydrochloric acid, respectively. Arsine is absorbed into a potassium permanganate solution, the discoloration of which is related to the concentration of the corresponding arsenic species. The proposed method is successfully validated by analyzing a soil reference material (NIST 2710a) and a sediment sample. PMID:25649028

  11. Liquid phase microextraction for the analysis of trace elements and their speciation

    NASA Astrophysics Data System (ADS)

    Hu, Bin; He, Man; Chen, Beibei; Xia, Linbo

    2013-08-01

    Trace/ultra-trace elements and their speciation analysis in complex matrices usually require sample preparation procedures to achieve sample clean-up and analyte preconcentration. Sample preparation is often the bottleneck in trace elements and their speciation analysis which has a direct impact on accuracy, precision and limits of detection and is often the rate-determining step of the analytical process. Recent trends in sample preparation include miniaturization, automation, high-throughput performance and reduction in solvent/sample consumption and operation time. Liquid-phase microextraction (LPME) technique as a novel and promising alternative in sample preparation can meet these requirements and has become a very efficient sample preparation technique. This review updates the state of art of LPME for trace elements and their speciation analysis and discusses its promising prospects. The major thrust of the article highlights the applications of LPME including single-drop microextraction (SDME), hollow fiber-liquid phase microextraction (HF-LPME), dispersive liquid liquid microextraction (DLLME) and solidified floating organic drop microextraction (SFODME) to the fields of elemental and their speciation analysis by atomic spectrometry-based methods, especially inductively coupled plasma mass spectrometry. General and specific concepts, different extraction formats and characteristics of LPME are described and compared, along with examples of recent innovations and applications presented to demonstrate its potential for trace elements and their speciation analysis in biological and environmental fields. Moreover, the application potential and an outlook on the combination of LPME and atomic spectrometry-based techniques for inorganic analysis are commentated.

  12. An equilibrium analysis to determine the speciation of metals in an incinerator

    SciTech Connect

    Wu, C.Y.; Biswas, P. )

    1993-04-01

    An equilibrium analysis is carried out to determine the speciation of metals among their various forms in an incinerator. The Gibbs free energy of the system is minimized by the method of element chemical potentials combined with atom population constraints using a thermodynamic equilibrium computer code. Ninety-one compounds of six metallic species-arsenic, cadmium, chromium, lead, mercury, and tin-are analyzed in this study. The effect of temperature and chlorine content on the speciation is established. The effect of combustion of hydrocarbon fuels on the equilibrium calculation is also evaluated.

  13. [The progress in speciation analysis of trace elements by atomic spectrometry].

    PubMed

    Wang, Zeng-Huan; Wang, Xu-Nuo; Ke, Chang-Liang; Lin, Qin

    2013-12-01

    The main purpose of the present work is to review the different non-chromatographic methods for the speciation analysis of trace elements in geological, environmental, biological and medical areas. In this paper, the sample processing methods in speciation analysis were summarized, and the main strategies for non-chromatographic technique were evaluated. The basic principles of the liquid extractions proposed in the published literatures recently and their advantages and disadvantages were discussed, such as conventional solvent extraction, cloud point extraction, single droplet microextraction, and dispersive liquid-liquid microextraction. Solid phase extraction, as a non-chromatographic technique for speciation analysis, can be used in batch or in flow detection, and especially suitable for the online connection to atomic spectrometric detector. The developments and applications of sorbent materials filled in the columns of solid phase extraction were reviewed. The sorbents include chelating resins, nanometer materials, molecular and ion imprinted materials, and bio-sorbents. Other techniques, e. g. hydride generation technique and coprecipitation, were also reviewed together with their main applications. PMID:24611406

  14. Evaluating Best Practices in Raman Spectral Analysis for Uranium Speciation and Relative Abundance in Aqueous Solutions.

    PubMed

    Lu, Grace; Forbes, Tori Z; Haes, Amanda J

    2016-01-01

    Raman spectroscopy is emerging as a powerful tool for identifying hexavalent uranium speciation in situ; however, there is no straightforward protocol for identifying uranyl species in solution. Herein, uranyl samples are evaluated using Raman spectroscopy, and speciation is monitored at various solution pH values and anion compositions. Spectral quality is evaluated using two Raman excitation wavelengths (532 and 785 nm) as these are critical for maximizing signal-to-noise and minimizing background from fluorescent uranyl species. The Raman vibrational frequency of uranyl shifts according to the identity of the coordinating ions within the equatorial plane and/or solution pH; therefore, spectral barcode analysis and rigorous peak fitting methods are developed that allow accurate and routine uranium species identification. All in all, this user's guide is expected to provide a user-friendly, straightforward approach for uranium species identification using Raman spectroscopy. PMID:26607279

  15. Flow injection analysis spectrophotometric speciation of iron in rain, fog, dust and soil samples

    NASA Astrophysics Data System (ADS)

    Aggarwal, S. G.

    2003-05-01

    A new attempt for the flow injection analysis (FIA) spectrophotometric speciation of iron in various enviromnental samples is described. The method is based on conventional iron-thiocyanate colour reaction. In this work, oxidation of Fe(II) into Fe(III) is carried out with HNO3 solution in the flowing stream and total iron present in the sample is measured. Whereas, Fe(III) is measured with a mixed solution of HCl+H2SO4. The presence of cationic (CPC) and non-ionic (TX-100) surfactants remarkably enhances the sensitivity (≈3 fold) of the automated conventional method and make the method applicable for the speciation of iron in real samples (rain, fog) containing the metal in lower ppb levels.

  16. Non-chromatographic atomic spectrometric methods in speciation analysis: A review

    NASA Astrophysics Data System (ADS)

    Vieira, Mariana A.; Grinberg, Patricia; Bobeda, Cláudio R. R.; Reyes, Mariela N. M.; Campos, Reinaldo C.

    2009-06-01

    In recent years, knowledge of the different chemical forms of the elements has gained increasing importance. There has been significant progress in methods that hyphenate chromatographic separations with atomic spectrometry. These hyphenated methods can provide the most complete information on the species distribution and even structure. However, they can be lengthy, relatively costly and difficult to bring to the routine. On the other hand, it is important to remember that chromatographic techniques represent only a minor part of the separation procedures available and, in certain cases, the application of basic chemistry to sample treatments can give quantitative information about specific chemical forms. In this sense, non-chromatographic procedures can provide methods that offer sufficient information on the elemental speciation for a series of situations. Moreover, these non-chromatographic strategies can be less time consuming, more cost effective and available, and present competitive limits of detection. Thus, non-chromatographic speciation analysis continues to be a promising research area and has been applied to the development of several methodologies that facilitate this type of analytical approach. In view of their importance, the present work overviews and discusses different non-chromatographic methods as alternatives for the speciation analysis of clinical, environmental and food samples using atomic spectrometry for detection.

  17. Stability of Tl(III) in the context of speciation analysis of thallium in plants.

    PubMed

    Sadowska, Monika; Biaduń, Ewa; Krasnodębska-Ostręga, Beata

    2016-02-01

    The paper presents both "good" and "bad" results obtained during speciation analysis of thallium in plant tissues of a hyperaccumulator of this metal. The object was white mustard - Sinapis alba L. In this plant there were found traces of trivalent thallium. The crucial point of this study (especially in the case of so unstable thallium form as Tl(III)) was to prove that the presence of Tl(III) was not caused by the procedure of sample preparation itself, and that the whole analytical method provides reliable results. Choice of the method for conservation of the initial speciation, extraction with the highest efficiency and proving the correctness of the obtained data were the most difficult parts of the presented study. It was found that: both freezing and drying cause significant changes in the speciation of thallium; quantitative analysis could be performed only with fresh tissues of mustard plants; only short-term storage of an extract from fresh plant tissues is possible; the methodology is not the source of thallium (III); only the presence of DTPA can greatly limit the reduction of TI(III) to TI(I) (up to 1-3%); the UV irradiation results in disintegration of TI(III)DTPA in the presence of plant matrix (reduction up to 90%). PMID:26465967

  18. Application of Hyphenated Techniques in Speciation Analysis of Arsenic, Antimony, and Thallium

    PubMed Central

    Michalski, Rajmund; Szopa, Sebastian; Jabłońska, Magdalena; Łyko, Aleksandra

    2012-01-01

    Due to the fact that metals and metalloids have a strong impact on the environment, the methods of their determination and speciation have received special attention in recent years. Arsenic, antimony, and thallium are important examples of such toxic elements. Their speciation is especially important in the environmental and biomedical fields because of their toxicity, bioavailability, and reactivity. Recently, speciation analytics has been playing a unique role in the studies of biogeochemical cycles of chemical compounds, determination of toxicity and ecotoxicity of selected elements, quality control of food products, control of medicines and pharmaceutical products, technological process control, research on the impact of technological installation on the environment, examination of occupational exposure, and clinical analysis. Conventional methods are usually labor intensive, time consuming, and susceptible to interferences. The hyphenated techniques, in which separation method is coupled with multidimensional detectors, have become useful alternatives. The main advantages of those techniques consist in extremely low detection and quantification limits, insignificant interference, influence as well as high precision and repeatability of the determinations. In view of their importance, the present work overviews and discusses different hyphenated techniques used for arsenic, antimony, and thallium species analysis, in different clinical, environmental and food matrices. PMID:22654649

  19. Multilocus analysis of nucleotide variation and speciation in three closely related Populus (Salicaceae) species.

    PubMed

    Du, Shuhui; Wang, Zhaoshan; Ingvarsson, Pär K; Wang, Dongsheng; Wang, Junhui; Wu, Zhiqiang; Tembrock, Luke R; Zhang, Jianguo

    2015-10-01

    Historical tectonism and climate oscillations can isolate and contract the geographical distributions of many plant species, and they are even known to trigger species divergence and ultimately speciation. Here, we estimated the nucleotide variation and speciation in three closely related Populus species, Populus tremuloides, P. tremula and P. davidiana, distributed in North America and Eurasia. We analysed the sequence variation in six single-copy nuclear loci and three chloroplast (cpDNA) fragments in 497 individuals sampled from 33 populations of these three species across their geographic distributions. These three Populus species harboured relatively high levels of nucleotide diversity and showed high levels of nucleotide differentiation. Phylogenetic analysis revealed that P. tremuloides diverged earlier than the other two species. The cpDNA haplotype network result clearly illustrated the dispersal route from North America to eastern Asia and then into Europe. Molecular dating results confirmed that the divergence of these three species coincided with the sundering of the Bering land bridge in the late Miocene and a rapid uplift of the Qinghai-Tibetan Plateau around the Miocene/Pliocene boundary. Vicariance-driven successful allopatric speciation resulting from historical tectonism and climate oscillations most likely played roles in the formation of the disjunct distributions and divergence of these three Populus species. PMID:26334549

  20. Gas and liquid chromatography with inductively coupled plasma mass spectrometry detection for environmental speciation analysis — advances and limitations

    NASA Astrophysics Data System (ADS)

    Szpunar, Joanna; McSheehy, Shona; Połeć, Kasia; Vacchina, Véronique; Mounicou, Sandra; Rodriguez, Isaac; Łobiński, Ryszard

    2000-07-01

    Recent advances in the coupling of gas chromatography (GC) and high performance liquid chromatography (HPLC) with inductively coupled plasma mass spectrometry (ICP MS) and their role in trace element speciation analysis of environmental materials are presented. The discussion is illustrated with three research examples concerning the following topics: (i) development and coupling of multicapillary microcolumn GC with ICP MS for speciation of organotin in sediment and biological tissue samples; (ii) speciation of arsenic in marine algae by size-exclusion-anion-exchange HPLC-ICP MS; and (iii) speciation of cadmium in plant cell cultures by size-exclusion HPLC-ICP MS. Particular attention is paid to the problem of signal identification in ICP MS chromatograms; the potential of electrospray MS/MS for this purpose is highlighted.

  1. Capillary microextraction (CME) and its application to trace elements analysis and their speciation.

    PubMed

    Hu, Bin; Zheng, Fei; He, Man; Zhang, Nan

    2009-09-14

    As a solvent-free miniaturized sample preparation technique, capillary microextraction (CME) has been hyphenated with different analytical instruments for trace elements analysis of environmental, biological, food and pharmaceutical samples. This review discusses the fundamentals and recent development of CME, including the theoretical basis, extraction modes (packed, open-tubular and monolithic CME) and capillary materials for CME. The emphasis is placed on the application of CME to trace/ultra-trace elements analysis and their speciation. Existing coating/monolithic materials used for CME are summarized together with a detailed overview of their preparation methods. PMID:19720168

  2. Diagnosis of nephrogenic systemic fibrosis by means of elemental bioimaging and speciation analysis.

    PubMed

    Birka, Marvin; Wentker, Kristina S; Lusmöller, Elke; Arheilger, Brigit; Wehe, Christoph A; Sperling, Michael; Stadler, Rudolf; Karst, Uwe

    2015-03-17

    The combined use of elemental bioimaging and speciation analysis is presented as a novel means for the diagnosis of nephrogenic systemic fibrosis (NSF), a rare disease occurring after administration of gadolinium-based contrast agents (GBCA) for magnetic resonance imaging (MRI), in skin samples of patients suffering from renal insufficiency. As the pathogenesis of NSF is still largely unknown particularly with regard to the distribution and potential retention of gadolinium in the human organism, a skin biopsy sample from a suspected NSF patient was investigated. The combination of inductively coupled plasma mass spectrometry (ICP-MS), laser ablation (LA) ICP-MS for quantitative elemental bioimaging, and hydrophilic interaction liquid chromatography (HILIC) ICP-MS for speciation analysis allowed one to unambiguously diagnose the patient as a case of NSF. By means of ICP-MS, a total gadolinium concentration from 3.02 to 4.58 mg/kg was determined in the biopsy sample, indicating a considerable deposition of gadolinium in the patient's skin. LA-ICP-MS revealed a distinctly inhomogeneous distribution of gadolinium as well as concentrations of up to 400 mg/kg in individual sections of the skin biopsy. Furthermore, the correlation between the distributions of phosphorus and gadolinium suggests the presence of GdPO4 deposits in the tissue section. Speciation analysis by means of HILIC-ICP-MS showed the presence of the intact GBCA Gd-HP-DO3A eight years after the administration to the patient. The concentration of the contrast agent in the aqueous extract of the skin biopsy was found to be 1.76 nmol/L. Moreover, evidence for the presence of further highly polar gadolinium species in low concentrations was found. PMID:25708271

  3. Inter-locus antagonistic coevolution as an engine of speciation: Assessment with hemiclonal analysis

    PubMed Central

    Rice, William R.; Linder, Jodell E.; Friberg, Urban; Lew, Timothy A.; Morrow, Edward H.; Stewart, Andrew D.

    2005-01-01

    One of Ernst Mayr's legacies is the consensus that the allopatry model is the predominant mode of speciation in most sexually reproducing lineages. In this model, reproductive isolation develops as a pleiotropic byproduct of the genetic divergence that develops among physically isolated populations. Presently, there is no consensus concerning which, if any, evolutionary process is primarily responsible for driving the specific genetic divergence that leads to reproductive isolation. Here, we focus on the hypothesis that inter-locus antagonistic coevolution drives rapid genetic divergence among allopatric populations and thereby acts as an important “engine” of speciation. We assert that only data from studies of experimental evolution, rather than descriptive patterns of molecular evolution, can provide definitive evidence for this hypothesis. We describe and use an experimental approach, called hemiclonal analysis, that can be used in the Drosophila melanogaster laboratory model system to simultaneously screen nearly the entire genome for both standing genetic variation within a population and the net-selection gradient acting on the variation. Hemiclonal analysis has four stages: (i) creation of a laboratory “island population”; (ii) cytogenetic cloning of nearly genome-wide haplotypes to construct hemiclones; (iii) measurement of additive genetic variation among hemiclones; and (iv) measurement of the selection gradient acting on phenotypic variation among hemiclones. We apply hemiclonal analysis to test the hypothesis that there is ongoing antagonistic coevolution between the sexes in the D. melanogaster laboratory model system and then discuss the relevance of this analysis to natural systems. PMID:15851669

  4. XANES spectroscopic analysis of phosphorus speciation in alum-amended poultry litter.

    PubMed

    Seiter, Jennifer M; Staats-Borda, Kristin E; Ginder-Vogel, Matthew; Sparks, Donald L

    2008-01-01

    Aluminum sulfate (alum; Al(2)(SO(4))(3).14H(2)O) is used as a chemical treatment of poultry litter to reduce the solubility and release of phosphate, thereby minimizing the impacts on adjacent aquatic ecosystems when poultry litter is land applied as a crop fertilizer. The objective of this study was to determine, through the use of X-ray absorption near edge structure (XANES) spectroscopy and sequential extraction, how alum amendments alter P distribution and solid-state speciation within the poultry litter system. Our results indicate that traditional sequential fractionation procedures may not account for variability in P speciation in heterogeneous animal manures. Analysis shows that NaOH-extracted P in alum amended litters is predominantly organic ( approximately 80%), whereas in the control samples, >60% of NaOH-extracted P was inorganic P. Linear least squares fitting (LLSF) analysis of spectra collected of sequentially extracted litters showed that the P is present in inorganic (P sorbed on Al oxides, calcium phosphates) and organic forms (phytic acid, polyphosphates, and monoesters) in alum- and non-alum-amended poultry litter. When determining land application rates of poultry litter, all of these compounds must be considered, especially organic P. Results of the sequential extractions in conjunction with LLSF suggest that no P species is completely removed by a single extractant. Rather, there is a continuum of removal as extractant strength increases. Overall, alum-amended litters exhibited higher proportions of Al-bound P species and phytic acid, whereas untreated samples contained Ca-P minerals and organic P compounds. This study provides in situ information about P speciation in the poultry litter solid and about P availability in alum- and non-alum-treated poultry litter that will dictate P losses to ground and surface water systems. PMID:18268311

  5. XANES Spectroscopic Analysis of Phosphorus Speciation in Alum-Amended Poultry Litter

    SciTech Connect

    Seiter,J.; Staats-Borda, K.; Ginder-Vogel, M.; Sparks, D.

    2008-01-01

    Aluminum sulfate (alum; Al2(SO4)3{center_dot}14H2O) is used as a chemical treatment of poultry litter to reduce the solubility and release of phosphate, thereby minimizing the impacts on adjacent aquatic ecosystems when poultry litter is land applied as a crop fertilizer. The objective of this study was to determine, through the use of X-ray absorption near edge structure (XANES) spectroscopy and sequential extraction, how alum amendments alter P distribution and solid-state speciation within the poultry litter system. Our results indicate that traditional sequential fractionation procedures may not account for variability in P speciation in heterogeneous animal manures. Analysis shows that NaOH-extracted P in alum amended litters is predominantly organic ({approx}80%), whereas in the control samples, >60% of NaOH-extracted P was inorganic P. Linear least squares fitting (LLSF) analysis of spectra collected of sequentially extracted litters showed that the P is present in inorganic (P sorbed on Al oxides, calcium phosphates) and organic forms (phytic acid, polyphosphates, and monoesters) in alum- and non-alum-amended poultry litter. When determining land application rates of poultry litter, all of these compounds must be considered, especially organic P. Results of the sequential extractions in conjunction with LLSF suggest that no P species is completely removed by a single extractant. Rather, there is a continuum of removal as extractant strength increases. Overall, alum-amended litters exhibited higher proportions of Al-bound P species and phytic acid, whereas untreated samples contained Ca-P minerals and organic P compounds. This study provides in situ information about P speciation in the poultry litter solid and about P availability in alum- and non-alum-treated poultry litter that will dictate P losses to ground and surface water systems.

  6. Equilibrium speciation dynamics in a model adaptive radiation of island lizards

    PubMed Central

    Rabosky, Daniel L.; Glor, Richard E.

    2010-01-01

    The relative importance of equilibrium and nonequilibrium processes in shaping patterns of species richness is one of the most fundamental questions in biodiversity studies. If equilibrium processes predominate, then ecological interactions presumably limit species diversity, potentially through diversity dependence of immigration, speciation, and extinction rates. Alternatively, species richness may be limited by the rate at which diversity arises or by the amount of time available for diversification. These latter explanations constitute nonequilibrium processes and can apply only to biotas that are unsaturated or far from diversity equilibria. Recent studies have challenged whether equilibrium models apply to biotas assembled through in situ speciation, as this process may be too slow to achieve steady-state diversities. Here we demonstrate that speciation rates in replicate Caribbean lizard radiations have undergone parallel declines to equilibrium conditions on three of four major islands. Our results suggest that feedback between total island diversity and per-capita speciation rates scales inversely with island area, with proportionately greater declines occurring on smaller islands. These results are consistent with strong ecological controls on species richness and suggest that the iconic adaptive radiation of Caribbean anoles may have reached an endpoint. PMID:21135239

  7. Speciation analysis of Arsenic from Contaminated Soils and Plants from an abandoned mine in Korea

    NASA Astrophysics Data System (ADS)

    Yoon, H.; Yoon, C.

    2008-12-01

    The analytical technique for true separation of different chemical species such as arsenic has been challenging in contaminated environmental samples because of their importance in environmental toxicity. Arsenic species can be transformed rapidly by slight changes in redox condition during experimental manipulation. It has been documented frequently by researchers including USEPA to standardize the analytical technique for arsenic from many environmental samples. The toxicity of elements depends not only on their total concentrations but also on their chemical forms. In real environment where arsenic was considered as contaminant, we often experience difficulty in measuring mobility of them from constituent soils. Compare to the previously documented techniques, measurement of total concentration, analytical techniques often called hyphenated or hybrid for analyzing different chemical species are being suggested and is regarded as essential method to resolve toxicities of different species. The reference materials with different mineral composition were selected and used. One is composed of mostly with Al-silicate minerals and another is mostly composed with calcite and ferrosilite. This study focuses on analytical method in order to set a research system for environmental assessment and restoration for general use. Various hyphenated analytical techniques for the speciation of toxic elements of interest must be preceded which is now expert in KBSI for collaborative researches. Speciation analysis results show that metals toxicity in different chemical species such as arsenic can be resolved.

  8. Speciation Dynamics of Phosphorus during (Hydro)Thermal Treatments of Sewage Sludge.

    PubMed

    Huang, Rixiang; Tang, Yuanzhi

    2015-12-15

    (Hydro)thermal treatments of sewage sludge from wastewater treatment process can significantly reduce waste volume and transform sludge into valuable products such as pyrochar and hydrochar. Given the global concern with phosphorus (P) resource depletion, P recycling/reclamation from or direct soil application of the derived chars can be potential P recycling practices. In order to evaluate P recyclability as well as the selection and optimization of treatment techniques, it is critical to understand the effects of different treatment techniques and conditions on P speciation and distribution. In the present study, we systematically characterized P speciation in chars derived from thermal (i.e., pyrolysis) and hydrothermal treatments of municipal sewage sludge using complementary chemical extraction and nuclear magnetic resonance (NMR) spectroscopy methods. P species in the raw activated sludge was dominated by orthophosphate and long-chain polyphosphates, whereas increased amounts of pyrophosphate and short-chain polyphosphates formed after pyrolysis at 250-600 °C. In contrast, hydrothermal treatments resulted in the production of only inorganic orthophosphate in the hydrochar. In addition to the change of molecular speciation, thermal treatments also altered the physical state and extractability of different P species in the pyrochars from pyrolysis, with both total P and polyphosphate being less extractable with increasing pyrolysis temperature. Results from this study suggest that P speciation and availability in sludge-derived chars are tunable by varying treatment techniques and conditions, and provide fundamental knowledge basis for the design and selection of waste management strategies for better nutrient (re)cycling and reclamation. PMID:26633236

  9. Analysis of 1995 speciated volatile organic compound data in the south central U.S.

    SciTech Connect

    Sather, M.E.; Kemp, M.G.; Yarbrough, J.W.; Kinsella, C.; Vanichchagorn, M.; Hazlett, J.

    1997-12-31

    An analysis of 1995 speciated volatile organic compound (VOC) data from three areas in the south central US has been performed for Baton Rouge, Louisiana, Houston, Texas, and El Paso, Texas. All three areas are required by the Clean Air Act Amendments of 1990 to collect ambient monitoring data for over 50 VOC species, including ten Clean Air Act Title III toxic compounds, as per the Photochemical Assessment Monitoring Stations (PAMS) requirements. The PAMS program was initiated to provide more detailed VOC data for scientists, modelers, and managers working toward eliminating violations of the ozone National Ambient Air Quality Standards (NAAQS). This paper presents useful information from a preliminary analysis of the 1995 speciated VOC and related data from Baton Rouge, Houston, and El Paso. All data analyzed were extracted from the US Environmental Protection Agency (EPA) Aerometric Information Retrieval System (AIRS) data base after collection and validation by the states of Louisiana and Texas. Key observations from the analyses include: (1) the presence of propane peaks coincident with ozone peaks during all three ozone episode days at the El Paso site; (2) the dominance of mobile source VOC emissions in the El Paso emission inventory, in contrast to the Baton Rouge and Houston VOC emission inventories, after noting strong correlations between carbon monoxide and major exhaust VOC species of gasoline; and (3) the 1995 ozone episodes at the Houston site were influenced by both morning build-up of ambient VOC concentrations and afternoon puffs of VOC emissions, while the 1995 ozone episodes at the Baton Rouge site were influenced by high early and mid-morning VOC ambient concentrations.

  10. Speciational view of macroevolution: Are micro and macroevolution decoupled?

    NASA Astrophysics Data System (ADS)

    Schwämmle, V.; Brigatti, E.

    2006-07-01

    We introduce a simple computational model that, with microscopic dynamics driven by natural selection and mutation alone, allows the description of true speciation events. A statistical analysis of the evolutionary tree so generated captures realistic features showing power laws for frequency distributions in time and size. Finally, some possible interpretations of the absence of punctuated dynamics with mass extinctions are worked out.

  11. Contact zone dynamics during early stages of speciation in a chorus frog (Pseudacris crucifer).

    PubMed

    Stewart, K A; Austin, J D; Zamudio, K R; Lougheed, S C

    2016-02-01

    Characterizing the genetic and behavioural consequences of contact between previously geographically isolated lineages provides insights into the mechanisms underlying diversification and ultimately speciation. The spring peeper (Pseudacris crucifer) is a widespread Nearctic chorus frog with six divergent mitochondrial DNA (mtDNA) lineages, many of which came into secondary contact during the Holocene. We examined genetics, morphology, advertisement calls and female preference for two lineages that began diverging in allopatry in the Pliocene and now overlap in southwestern Ontario, Canada. We found non-coincident clines in mtDNA and nuclear DNA, mirroring directionality of premating isolation barriers. We also found divergence in a range of traits between these two lineages, displacement in male call attributes and female preference for calls of their natal lineage in sympatry. Hybrids were morphologically distinct from both parental lineages, but hybrid male calls were acoustically intermediate. Female hybrids showed asymmetrical preference for Eastern male calls. These results considered together provide evidence of either unidirectional hybridization or selection against hybrids, potentially implying reproductive character displacement. Our work demonstrates the utility of integrated, multi-character approaches to understanding the processes of divergence and the nature of speciation. PMID:26626576

  12. Room Temperature Cation Exchange Reaction in Nanocrystals for Ultrasensitive Speciation Analysis of Silver Ions and Silver Nanoparticles.

    PubMed

    Huang, Ke; Xu, Kailai; Tang, Jie; Yang, Lu; Zhou, Jingrong; Hou, Xiandeng; Zheng, Chengbin

    2015-07-01

    To evaluate the toxicity of silver nanoparticles (AgNPs) and Ag(+) and gain deep insight into the transformation of AgNPs in the environment or organisms, ultrasensitive analytical methods are needed for their speciation analysis. About 40-fold of Cd(2+) in CdTe ionic nanocrystals can be "bombarded-and-exploded" (exchanged) in less than 1 min simply by mixing the nanocrystals with Ag(+) solution at room temperature, while this cation exchange reaction did not occur when only silver nanoparticles were present. On the basis of this striking difference, an ultrasensitive method was developed for speciation analysis of Ag(+) and AgNPs in complex matrices. The released Cd(2+) was reduced to its volatile species by sodium tetrahydroborate, which was separated and swept to an inductively coupled plasma mass spectrometer (ICPMS) or an atomic fluorescence spectrometer (AFS) for the indirect but ultrasensitive detection of Ag(+). Owing to the remarkable signal amplification via the cation exchange reaction and the advantages of chemical vapor generation for sampling, the limit of detection was 0.0003 μg L(-1) for Ag(+) by ICPMS, which was improved by 100-fold compared to the conventional method. Relative standard deviations are better than 2.5% at a concentration of 0.5 μg L(-1) Ag(+) or AgNPs regardless of the detector. The proposed method retains several unique advantages, including ultrahigh sensitivity, speciation analysis, simplicity and being organic reagent-free, and has been successfully utilized for speciation analysis of Ag(+) and AgNPs in environmental water samples and paramecium cells. PMID:26017198

  13. Molecular Dynamics Studies on the Effects of Water Speciation on Interfacial Structure and Dynamics in Silica-Filled PDMS Composites

    SciTech Connect

    Gee, R H; Maxwell, R S; Dinh, L N; Balazs, B

    2001-11-21

    Significant changes in materials properties of siloxane based polymers can be obtained by the addition of inorganic fillers. In silica-filled polydimethylsiloxane (PDMS) based composites the mechanism of this reinforcing behavior is presumably hydrogen bonding between surface hydroxyls and backbone siloxane species. We have chosen to investigate in detail the effect of chemisorbed and physisorbed water on the interfacial structure and dynamics in silica-filled PDMS based composites. Toward this end, we have combined molecular dynamics simulations and experimental studies employing DMA and Nh4R analysis. Our results suggest that the polymer-silica contact distance and the mobility of interfacial polymer chains significantly decreased as the hydration level at the interface was reduced. The reduced mobility of the PDMS chains in the interfacial domain reduced the overall, bulk, motional properties of the polymer, thus causing an effective ''stiffening'' of the polymer matrix. The role of the long-ranged Coulombic interactions on the structural features and chain dynamics of the polymer were also examined. Both are found to be strongly influenced by the electrostatic interactions as identified by the bond orientation time correlation function and local density distribution functions. These results have important implications for the design of nanocomposite silica-siloxane materials.

  14. Ancient and recent patterns of geographic speciation in the oyster mushroom Pleurotus revealed by phylogenetic analysis of ribosomal DNA sequences.

    PubMed Central

    Vilgalys, R; Sun, B L

    1994-01-01

    Evidence from molecular systematic studies suggests that many mushroom species may be quite ancient. Gene phylogenies were developed to examine the relationship between reproductive isolation, genetic divergence, and biogeography in oyster mushrooms (Pleurotus). Sequence data were obtained for two regions of DNA from populations belonging to eight intersterility groups (biological species). Phylogenetic analysis of sequences from the 5' portion of the nuclear encoded large subunit rDNA demonstrates an ancient origin for four intersterility groups of broad geographic distribution (world-wide), with a more recent radiation of several intersterility groups that are restricted to the Northern Hemisphere. An expanded analysis using sequence data from the more variable rDNA internal transcribed spacer region also reveals a phylogenetically based pattern of genetic divergence associated with allopatric speciation among populations from different continents in the Northern Hemisphere. The ability of rDNA sequences to resolve phylogenetic relationships among geographically isolated populations within intersterility groups illustrates the importance of biogeography for understanding speciation in Pleurotus. Patterns of geographic distribution among intersterility groups suggest that several species lineages evolved quite early, with recently evolved groups restricted to the Northern Hemisphere and older lineages occurring throughout the world. Based on phylogenetic evidence, analysis of historical biogeography using area cladograms shows that multiple dispersal and vicariance events are responsible for patterns of speciation observed. Images PMID:8183955

  15. Recent Advances in On-Line Methods Based on Extraction for Speciation Analysis of Chromium in Environmental Matrices.

    PubMed

    Trzonkowska, Laura; Leśniewska, Barbara; Godlewska-Żyłkiewicz, Beata

    2016-07-01

    The biological activity of Cr(III) and Cr(VI) species, their chemical behavior, and toxic effects are dissimilar. The speciation analysis of Cr(III) and Cr(VI) in environmental matrices is then of great importance and much research has been devoted to this area. This review presents recent developments in on-line speciation analysis of chromium in such samples. Flow systems have proved to be excellent tools for automation of sample pretreatment, separation/preconcentration of chromium species, and their detection by various instrumental techniques. Analytical strategies used in chromium speciation analysis discussed in this review are divided into categories based on selective extraction/separation of chromium species on solid sorbents and liquid-liquid extraction of chromium species. The most popular strategy is that based on solid-phase extraction. Therefore, this review shows the potential of novel materials designed and used for selective binding of chromium species. The progress in miniaturization of measurement systems is also presented. PMID:26186521

  16. Observation and analysis of speciated atmospheric mercury in Shangri-La, Tibetan Plateau, China

    NASA Astrophysics Data System (ADS)

    Zhang, H.; Fu, X. W.; Lin, C.-J.; Wang, X.; Feng, X. B.

    2015-01-01

    This study reports the concentrations and potential sources of speciated atmospheric mercury at the Shangri-La Atmosphere Watch Regional Station (SAWRS), a pristine high-altitude site (3580 m a.s.l.) in Tibetan Plateau, China. Total gaseous mercury (TGM, defined as the sum of gaseous elemental mercury, GEM, and gaseous oxidized mercury, GOM), GOM and particulate-bound mercury (PBM) were monitored from November 2009 to November 2010 to investigate the characteristics and potential influence of the Indian summer monsoon (ISM) and the Westerlies on atmospheric transport of mercury. The mean concentrations (± standard deviation) of TGM, PBM and GOM were 2.55 ± 0.73 ng m-3, 38.82 ± 31.26 pg m-3 and 8.22 ± 7.90 pg m-3, respectively. A notable seasonal pattern of TGM concentrations was observed with higher concentrations at the beginning and the end of the ISM season. High TGM concentrations (> 2.5 ng m-3) were associated with the transport of dry air that carried regional anthropogenic emissions from both Chinese domestic and foreign (e.g., Myanmar, Bay of Bengal, and northern India) sources based on analysis of HYSPLIT4 back trajectories. Somewhat lower PBM and GOM levels during the ISM period were attributed to the enhanced wet scavenging. The high GOM and PBM were likely caused by local photo-chemical transformation under low RH and the domestic biofuel burning in cold seasons.

  17. Observation and analysis of speciated atmospheric mercury in Shangri-la, Tibetan Plateau, China

    NASA Astrophysics Data System (ADS)

    Zhang, H.; Fu, X. W.; Lin, C.-J.; Wang, X.; Feng, X. B.

    2014-05-01

    This study reports the speciated concentration and the potential sources of atmospheric mercury measured at the Shangri-La Atmosphere Watch Regional Station (SAWRS), a pristine high-altitude site (3580 m a.s.l.) in Tibetan Plateau, China. The total gaseous mercury (TGM, defined as the sum of Gaseous Elemental Mercury, GEM, and gaseous oxidized mercury, GOM), GOM and particulate-bound mercury (PBM) were monitored from November 2009 to November 2010 to investigate the characteristics and atmospheric transport of mercury influenced by the Indian summer monsoon (ISM) and westerlies. The mean concentrations of TGM, PBM and GOM were 2.55 ± 0.73 ng m-3, 37.78 ± 31.35 pg m-3 and 7.90 ± 7.89 ng m-3. A notable seasonal pattern was observed with higher TGM concentrations in the beginning and end of the ISM. High TGM concentrations were associated with the transport of dry air that carried regional anthropogenic emissions from both domestic and foreign sources. The low PBM and GOM level was attributed to the deposition and wet scavenging during the ISM period. Backward trajectory analysis of air masses associated with TGM levels suggested that both the ISM and westerlies can carry Hg emitted in Burma, Bengal bay and north India to the SAWRS.

  18. Consequences of vapor enhancement on selenium speciation analysis by HPLC/ICPMS.

    PubMed

    Juresa, Dijana; Kuehnelt, Doris; Francesconi, Kevin A

    2006-12-15

    Recent work has shown the presence of volatile selenium metabolites in human urine and suggested that these compounds could compromise quantitative selenium analyses by ICPMS. We show that with a commonly used sample introduction system (pneumatic nebulizer and spray chamber), two volatile selenium species recently identified in urine, namely, dimethyl selenide and dimethyl diselenide, gave greatly increased ICPMS responses (up to 58-fold) relative to selenite, an effect related to their volatilization in the spray chamber resulting in enhanced transport to the plasma. The quantitative consequences of this effect were demonstrated by measurement of total selenium and selenium species in certified reference material, NIES CRM 18 human urine. Direct flow injection analysis of the urine gave a total selenium concentration more than 2-fold higher than the certified value. These data suggested that NIES CRM 18 may contain part of its selenium as volatile species, and subsequent reversed-phase HPLC/ICPMS showed the presence of dimethyl selenide in addition to selenosugars and trimethylselenonium ion. Although the practice of quantifying unidentified chromatographic peaks against those of known compounds is common in speciation analysis, this approach when applied to NIES CRM 18 gave a value for the sum of selenium species which was twice the certified total selenium concentration. This work shows that the presence of volatile selenium species in urine precludes the use of flow injection analysis for total selenium measurements and imposes severe restrictions on the quantification of urinary selenium metabolites. In addition, it raises broader issues of the validity of the "dilute and shoot" approach to the determination of metals in clinical analysis of biological fluids. PMID:17165855

  19. The Dynamics of Mercury Speciation and Transport at a Central California Coastal Lagoon

    NASA Astrophysics Data System (ADS)

    Ganguli, P. M.; Swarzenski, P. W.; Dimova, N. T.; Merckling, J.; Kehrlein, N. C.; Hohn, R. A.; Richardson, C. M.; Johnson, C. D.; Fisher, A. T.; Lamborg, C. H.; Flegal, A. R., Jr.

    2014-12-01

    We evaluated spatial and temporal trends in total mercury and monomethylmercury (MMHg) in groundwater, lagoon water, and nearshore seawater to assess the drivers of MMHg production in a coastal lagoon system. Many West Coast streams transition from estuarine to lagoon conditions in the dry season when a sand berm develops at the stream mouth, restricting surface water exchange with the ocean. Because lagoons accumulate nutrients from their upstream watershed they are susceptible to eutrophication, which can promote the growth of anaerobic bacteria. In nearshore settings, these bacteria are primarily responsible for producing MMHg, a bioaccumulative neurotoxin. We found that MMHg concentrations in lagoon water (1 - 5 pM) were higher than in groundwater (0.2 - 1 pM) and coastal seawater (0.1 - 0.6 pM). Groundwater depth profiles combined with subsurface resistivity images suggest MMHg in lagoon water was transported through the sand berm to adjacent seawater. MMHg in seawater and groundwater followed similar trends, providing additional evidence of groundwater-surface water interaction. MMHg in groundwater directly below the lagoon was consistently higher where dissolved oxygen and NO3- decreased, implying MMHg production by anaerobic bacteria. Over a ~7-hour period we observed a 0.6 pM decrease in groundwater MMHg (1 to 0.4 pM) that coincided with a decrease in water temperature (16.5 to 13 °C). We hypothesize that microbial activity, and consequently MMHg production, were enhanced in warmer water. Because coastal lagoons support intricate food webs and serve as nurseries for a variety of organisms, processes that influence mercury speciation and transport in these ecosystems may have a disproportionate impact on nearshore mercury biogeochemical cycling.

  20. Flight Dynamics Analysis Branch

    NASA Technical Reports Server (NTRS)

    Stengle, Tom; Flores-Amaya, Felipe

    2000-01-01

    This report summarizes the major activities and accomplishments carried out by the Flight Dynamics Analysis Branch (FDAB), Code 572, in support of flight projects and technology development initiatives in fiscal year 2000. The report is intended to serve as a summary of the type of support carried out by the FDAB, as well as a concise reference of key accomplishments and mission experience derived from the various mission support roles. The primary focus of the FDAB is to provide expertise in the disciplines of flight dynamics, spacecraft trajectory, attitude analysis, and attitude determination and control. The FDAB currently provides support for missions and technology development projects involving NASA, government, university, and private industry.

  1. Achieving 100% Efficient Postcolumn Hydride Generation for As Speciation Analysis by Atomic Fluorescence Spectrometry.

    PubMed

    Marschner, Karel; Musil, Stanislav; Dědina, Jiří

    2016-04-01

    An experimental setup consisting of a flow injection hydride generator coupled to an atomic fluorescence spectrometer was optimized in order to generate arsanes from tri- and pentavalent inorganic arsenic species (iAs(III), iAs(V)), monomethylarsonic acid (MAs(V)), and dimethylarsinic acid (DMAs(V)) with 100% efficiency with the use of only HCl and NaBH4 as the reagents. The optimal concentration of HCl was 2 mol L(-1); the optimal concentration of NaBH4 was 2.5% (m/v), and the volume of the reaction coil was 8.9 mL. To prevent excessive signal noise due to fluctuations of hydride supply to an atomizer, a new design of a gas-liquid separator was implemented. The optimized experimental setup was subsequently interfaced to HPLC and employed for speciation analysis of arsenic. Two chromatography columns were tested: (i) ion-pair chromatography and (ii) ion exchange chromatography. The latter offered much better results for human urine samples without a need for sample dilution. Due to the equal hydride generation efficiency (and thus the sensitivities) of all As species, a single species standardization by DMAs(V) standard was feasible. The limits of detection for iAs(III), iAs(V), MAs(V), and DMAs(V) were 40, 97, 57, and 55 pg mL(-1), respectively. Accuracy of the method was tested by the analysis of the standard reference material (human urine NIST 2669), and the method was also verified by the comparative analyses of human urine samples collected from five individuals with an independent reference method. PMID:26938848

  2. Cesium Speciation in Dust from Municipal Solid Waste and Sewage Sludge Incineration by Synchrotron Radiation Micro-X-ray Analysis.

    PubMed

    Shiota, Kenji; Takaoka, Masaki; Fujimori, Takashi; Oshita, Kazuyuki; Terada, Yasuko

    2015-11-17

    The chemical behavior of Cs in waste incineration processes is important to consider when disposing of radionuclide-contaminated waste from the Fukushima Daiichi nuclear power plant accident in Japan. To determine the speciation of Cs, we attempted the direct speciation of trace amounts of stable Cs in the dust from municipal solid waste incineration (MSWI) and sewage sludge incineration (SSI) by micro-X-ray fluorescence (μ-XRF) and micro-X-ray absorption fine structure (μ-XAFS) at the SPring-8 facility. The μ-XRF results revealed that locally produced Cs was present in MSWI and SSI dust within the cluster size range of 2-10 μm. The μ-XAFS analysis confirmed that the speciation of Cs in MSWI dust was similar to that of CsCl, while in SSI dusts it was similar to pollucite. The solubility of Cs was considered to be influenced by the exact Cs species present in incineration residue. PMID:26477930

  3. SPATIAL TEMPORAL ANALYSIS OF HEALTH EFFECTS ASSOCIATED WITH SOURCES AND SPECIATION OF FINE PM

    EPA Science Inventory

    The key scientific benefits of this work include:

    1. development of a new flexible spatiotemporal modeling framework for predicting fine PM mass and speciation that makes the best use of available information, combining monitoring data with air quality numer...

    2. Special Speciation

      ERIC Educational Resources Information Center

      Countryman, Lyn L.; Maroo, Jill D.

      2015-01-01

      Considerable anecdotal evidence indicates that some of the most difficult concepts that both high school and undergraduate elementary-education students struggle with are those surrounding evolutionary principles, especially speciation. It's no wonder that entry-level biology students are confused, when biologists have multiple definitions of…

    3. Direct speciation analysis of arsenic in sub-cellular compartments using micro-X-ray absorption spectroscopy

      SciTech Connect

      Bacquart, Thomas; Deves, Guillaume; Ortega, Richard

      2010-07-15

      Identification of arsenic chemical species at a sub-cellular level is a key to understanding the mechanisms involved in arsenic toxicology and antitumor pharmacology. When performed with a microbeam, X-ray absorption near-edge structure ({mu}-XANES) enables the direct speciation analysis of arsenic in sub-cellular compartments avoiding cell fractionation and other preparation steps that might modify the chemical species. This methodology couples tracking of cellular organelles in a single cell by confocal or epifluorescence microscopy with local analysis of chemical species by {mu}-XANES. Here we report the results obtained with a {mu}-XANES experimental setup based on Kirkpatrick-Baez X-ray focusing optics that maintains high flux of incoming radiation (>10{sup 11} ph/s) at micrometric spatial resolution (1.5x4.0 {mu}m{sup 2}). This original experimental setup enabled the direct speciation analysis of arsenic in sub-cellular organelles with a 10{sup -15} g detection limit. {mu}-XANES shows that inorganic arsenite, As(OH){sub 3}, is the main form of arsenic in the cytosol, nucleus, and mitochondrial network of cultured cancer cells exposed to As{sub 2}O{sub 3}. On the other hand, a predominance of As(III) species is observed in HepG2 cells exposed to As(OH){sub 3} with, in some cases, oxidation to a pentavalent form in nuclear structures of HepG2 cells. The observation of intra-nuclear mixed redox states suggests an inter-individual variability in a cell population that can only be evidenced with direct sub-cellular speciation analysis.

    4. Drop Dynamics and Speciation in Isolation of Metals from Liquid Wastes by Reactive Scavenging

      SciTech Connect

      Arne J. Pearlstein; Alexander Scheeline

      2002-08-30

      Computational and experimental studies of the motion and dynamics of liquid drops in gas flows were conducted with relevance to reactive scavenging of metals from atomized liquid waste. Navier-Stoke's computations of deformable drops revealed a range of conditions from which prolate drops are expected, and showed how frajectiones of deformable drops undergoing deceleration can be computed. Experimental work focused on development of emission fluorescence, and scattering diagnostics. The instrument developed was used to image drop shapes, soot, and nonaxisymmetric departures from steady flow in a 22kw combustor

    5. Motorcycle dynamics by multibody dynamics analysis

      SciTech Connect

      Imaizumi, Hirohide; Fujioka, Takehiko

      1995-12-31

      The purpose of this paper is to construct simulation models of a motorcycle with a rider by use of multibody dynamics analysis (MDA). Three types of MDA models are developed for evaluation of the effectiveness of MDA for motorcycle dynamics. Impulse responses with parameter study and lane change maneuvers are calculated. The results of simulations agree with that of experiments well and effectiveness of MDA to the motorcycle dynamics field is shown.

    6. Evolutionary dynamics at high latitudes: speciation and extinction in polar marine faunas

      PubMed Central

      Clarke, Andrew; Crame, J. Alistair

      2010-01-01

      Ecologists have long been fascinated by the flora and fauna of extreme environments. Physiological studies have revealed the extent to which lifestyle is constrained by low temperature but there is as yet no consensus on why the diversity of polar assemblages is so much lower than many tropical assemblages. The evolution of marine faunas at high latitudes has been influenced strongly by oceanic cooling during the Cenozoic and the associated onset of continental glaciations. Glaciation eradicated many shallow-water habitats, especially in the Southern Hemisphere, and the cooling has led to widespread extinction in some groups. While environmental conditions at glacial maxima would have been very different from those existing today, fossil evidence indicates that some lineages extend back well into the Cenozoic. Oscillations of the ice-sheet on Milankovitch frequencies will have periodically eradicated and exposed continental shelf habitat, and a full understanding of evolutionary dynamics at high latitude requires better knowledge of the links between the faunas of the shelf, slope and deep-sea. Molecular techniques to produce phylogenies, coupled with further palaeontological work to root these phylogenies in time, will be essential to further progress. PMID:20980314

    7. Confinement Vessel Dynamic Analysis

      SciTech Connect

      R. Robert Stevens; Stephen P. Rojas

      1999-08-01

      A series of hydrodynamic and structural analyses of a spherical confinement vessel has been performed. The analyses used a hydrodynamic code to estimate the dynamic blast pressures at the vessel's internal surfaces caused by the detonation of a mass of high explosive, then used those blast pressures as applied loads in an explicit finite element model to simulate the vessel's structural response. Numerous load cases were considered. Particular attention was paid to the bolted port connections and the O-ring pressure seals. The analysis methods and results are discussed, and comparisons to experimental results are made.

    8. Root-induced changes in pH and dissolved organic matter binding capacity affect copper dynamic speciation in the rhizosphere

      NASA Astrophysics Data System (ADS)

      Bravin, Matthieu N.; Garnier, Cédric; Lenoble, Véronique; Gérard, Frédéric; Dudal, Yves; Hinsinger, Philippe

      2012-05-01

      Due to only few experimental evidences, the importance of root-induced alteration of metal dynamic speciation in the rhizosphere in the determination of metal bioavailability to plants is still a matter for debate. The present study thus investigated how root-induced changes in pH and dissolved organic matters (DOM) altered copper (Cu) dynamic speciation in the rhizosphere of durum wheat (Triticum turgidum durum L.). Plants were exposed to a Cu-contaminated soil previously alkalised by liming to cover soil pH values ranging from 4.8 to 7.5. A range of analytical techniques was deployed on soil exposed (i.e. in the rhizosphere) or not (i.e. in the bulk soil) to plant roots, including the measurement and the modelling (using the Humic Ion-Binding Model VI) of Cu2+ activity, the measurement of labile Cu concentration and Cu lability by Differential Pulse Anodic Stripping Voltammetry (DPASV) and Diffusive Gradients in Thin films (DGT). Due to root-induced alkalisation, pH reached about 7.3 in the rhizosphere whatever the initial bulk soil pH. Compared to the most acidic bulk soil (pH ≈ 4.8), Cu2+ activity decreased by three orders of magnitude in the rhizosphere while DPASV-Cu concentration decreased by 6-fold. DOM became the key driver of Cu dynamic speciation in the rhizosphere, where roots induced up to an order of magnitude increase in DOM concentration compared to bulk soils. This resulted in an increase in labile-Cu (both DPASV and DGT) concentrations, in spite of a decrease in Cu2+ activity. Model VI calculations supported a decrease in DOM binding capacity towards Cu in the rhizosphere. DPASV measurements unequivocally demonstrated that the increase in Cu lability in the rhizosphere solution can be attributed to a greater lability of organically-bound Cu. Collectively, our data introduce a consistent picture of root-induced changes of Cu dynamic speciation in the rhizosphere that were notably related to substantial alterations of DOM binding capacity.

    9. Atmospheric mercury speciation dynamics at the high-altitude Pic du Midi Observatory, southern France

      NASA Astrophysics Data System (ADS)

      Fu, Xuewu; Marusczak, Nicolas; Heimbürger, Lars-Eric; Sauvage, Bastien; Gheusi, François; Prestbo, Eric M.; Sonke, Jeroen E.

      2016-05-01

      Continuous measurements of atmospheric gaseous elemental mercury (GEM), particulate bound mercury (PBM) and gaseous oxidized mercury (GOM) at the high-altitude Pic du Midi Observatory (PDM Observatory, 2877 m a.s.l.) in southern France were made from November 2011 to November 2012. The mean GEM, PBM and GOM concentrations were 1.86 ng m-3, 14 pg m-3 and 27 pg m-3, respectively and we observed 44 high PBM (peak PBM values of 33-98 pg m-3) and 61 high GOM (peak GOM values of 91-295 pg m-3) events. The high PBM events occurred mainly in cold seasons (winter and spring) whereas high GOM events were mainly observed in the warm seasons (summer and autumn). In cold seasons the maximum air mass residence times (ARTs) associated with high PBM events were observed in the upper troposphere over North America. The ratios of high PBM ARTs to total ARTs over North America, Europe, the Arctic region and Atlantic Ocean were all elevated in the cold season compared to the warm season, indicating that the middle and upper free troposphere of the Northern Hemisphere may be more enriched in PBM in cold seasons. PBM concentrations and PBM / GOM ratios during the high PBM events were significantly anti-correlated with atmospheric aerosol concentrations, air temperature and solar radiation, suggesting in situ formation of PBM in the middle and upper troposphere. We identified two distinct types of high GOM events with the GOM concentrations positively and negatively correlated with atmospheric ozone concentrations, respectively. High GOM events positively correlated with ozone were mainly related to air masses from the upper troposphere over the Arctic region and middle troposphere over the temperate North Atlantic Ocean, whereas high GOM events anti-correlated with ozone were mainly related to air masses from the lower free troposphere over the subtropical North Atlantic Ocean. The ARTs analysis demonstrates that the lower and middle free troposphere over the North Atlantic Ocean was

    10. Preconcentration and Speciation of Trace Elements and Trace-Element Analogues of Radionuclides by Neutron Activation Analysis

      SciTech Connect

      Chatt, A.

      1999-11-14

      We have developed a number of preconcentration neutron activation analysis (PNAA) methods in our laboratory for the determination of trace elements in a variety of complex sample matrices. We developed a number of cocrystallization and coprecipitation methods for the determination of trace elements in water samples. We developed several methods for the determination of I in foods and diets. We have developed a number of PNAA methods in our laboratory We determined As and Sb in geological materials and natural waters by coprecipitation with Se and Au in silicate rocks and ores by coprecipitation with Te followed by NAA. We developed an indirect NAA method for the determination of B in leachates of borosilicate glass. We have been interested in studying the speciation of Am, Tc, and Np in simulated vitrified groundwater leachates of high-level wastes under oxid and anoxic conditions using a number of techniques. We then used PNAA methods to study speciation of trace-element analogues of radionuclides. We have been able to apply biochemical techniques and NAA for the separation, preconcentration, and characterization of metalloprotein and protein-bound trace-element species in subcellular fractions of bovine kidneys. Lately, we have concentrated our efforts to develop chemical and biochemical methods in conjunction with NAA, NMR, and MS for the separation and identification of extractable organohalogens (EOX) in tissues of beluga whales, cod, and northern pink shrimp

    11. Analysis of the Mo speciation in the JEB tailings management facility at McClean Lake, Saskatchewan.

      PubMed

      Hayes, John R; Grosvenor, Andrew P; Rowson, John; Hughes, Kebbi; Frey, Ryan A; Reid, Joel

      2014-04-15

      The JEB Tailings Management Facility (TMF) is central to reducing the environmental impact of the uranium ore processing operation located at the McClean Lake facility and operated by AREVA Resources Canada (AREVA). The geochemical controls of this facility are largely designed around the idea that elements of concern, such as Mo, will be controlled in the very long term through equilibrium with supporting minerals. However, these systems are far from equilibrium when the tailings are first placed in the TMF, and it can take years, decades, or centuries to reach equilibrium. Therefore, it is necessary to understand how these reactions evolve toward an equilibrium state to understand the very long-term behavior of the TMF and to ensure that the elements of concern will be adequately contained. To this end, the Mo speciation in a series of samples taken from the JEB TMF during the 2008 sampling campaign has been analyzed. This analysis was performed using powder X-ray diffraction (XRD), X-ray fluorescence mapping (μ-XRF), and X-ray absorption near-edge spectroscopy (XANES). These results show that only XANES was effective in speciating Mo in the tailings samples, because it was both element-specific and sensitive enough to detect the low concentrations of Mo present. These results show that the predominant Mo-bearing phases present in the TMF are powellite, ferrimolybdite, and molybdate adsorbed on ferrihydrite. PMID:24708531

    12. Using FTIR-photoacoustic spectroscopy for phosphorus speciation analysis of biochars.

      PubMed

      Bekiaris, Georgios; Peltre, Clément; Jensen, Lars S; Bruun, Sander

      2016-11-01

      In the last decade, numerous studies have evaluated the benefits of biochar for improving soil quality. The purposes of the current study were to use Fourier transform infrared-photoacoustic spectroscopy (FTIR-PAS) to analyse P species in biochar and to determine the effect of pyrolysis temperature on P speciation. The photoacoustic detector has a range of advantages for the very dark biochar samples in comparison to more traditional reflectance or transmission FTIR detectors. The spectra turned out to be more informative in the regions with P vibrations for biochar produced at temperatures above 400°C, where most of the remaining organic compounds were aromatic and therefore not overlapping with the P vibrations. For biochars produced from the solid fraction of digestate from biogas production, an increase in the pyrolysis temperature led to the formation of a large variety of P species. Hydroxylapatite and tricalcium phosphate were the most dominant P species in the mid to high temperature range (600-900°C), while at 1050°C apatite, iron phosphates, variscite and calcium phosphates were identified. However, the changes in P speciation in biochars produced from bone meal at different temperatures were smaller than in the biochars from digestate. Hydroxylapatite and calcium phosphates were identified in biochar produced at all temperatures, while there was some indication of struvite formation. PMID:27267281

    13. Field and laboratory arsenic speciation methods and their application to natural-water analysis.

      PubMed

      Bednar, A J; Garbarino, J R; Burkhardt, M R; Ranville, J F; Wildeman, T R

      2004-01-01

      The toxic and carcinogenic properties of inorganic and organic arsenic species make their determination in natural water vitally important. Determination of individual inorganic and organic arsenic species is critical because the toxicology, mobility, and adsorptivity vary substantially. Several methods for the speciation of arsenic in groundwater, surface-water, and acid mine drainage sample matrices using field and laboratory techniques are presented. The methods provide quantitative determination of arsenite [As(III)], arsenate [As(V)], monomethylarsonate (MMA), dimethylarsinate (DMA), and roxarsone in 2-8 min at detection limits of less than 1 microg arsenic per liter (microg As L(-1)). All the methods use anion exchange chromatography to separate the arsenic species and inductively coupled plasma-mass spectrometry as an arsenic-specific detector. Different methods were needed because some sample matrices did not have all arsenic species present or were incompatible with particular high-performance liquid chromatography (HPLC) mobile phases. The bias and variability of the methods were evaluated using total arsenic, As(III), As(V), DMA, and MMA results from more than 100 surface-water, groundwater, and acid mine drainage samples, and reference materials. Concentrations in test samples were as much as 13,000 microg As L(-1) for As(III) and 3700 microg As L(-1) for As(V). Methylated arsenic species were less than 100 microg As L(-1) and were found only in certain surface-water samples, and roxarsone was not detected in any of the water samples tested. The distribution of inorganic arsenic species in the test samples ranged from 0% to 90% As(III). Laboratory-speciation method variability for As(III), As(V), MMA, and DMA in reagent water at 0.5 microg As L(-1) was 8-13% (n=7). Field-speciation method variability for As(III) and As(V) at 1 microg As L(-1) in reagent water was 3-4% (n=3). PMID:14675647

    14. Miniaturized preconcentration methods based on liquid-liquid extraction and their application in inorganic ultratrace analysis and speciation: A review

      NASA Astrophysics Data System (ADS)

      Pena-Pereira, Francisco; Lavilla, Isela; Bendicho, Carlos

      2009-01-01

      Liquid-liquid extraction (LLE) is widely used as a pre-treatment technique for separation and preconcentration of both organic and inorganic analytes from aqueous samples. Nevertheless, it has several drawbacks, such as emulsion formation or the use of large volumes of solvents, which makes LLE expensive and labour intensive. Therefore, miniaturization of conventional liquid-liquid extraction is needed. The search for alternatives to the conventional LLE using negligible volumes of extractant and the minimum number of steps has driven the development of three new miniaturized methodologies, i.e. single-drop microextraction (SDME), hollow fibre liquid-phase microextraction (HF-LPME) and dispersive liquid-liquid microextraction (DLLME). The aim of this paper is to provide an overview of these novel preconcentration approaches and their potential use in analytical labs involved in inorganic (ultra)trace analysis and speciation. Relevant applications to the determination of metal ions, metalloids, organometals and non-metals are included.

    15. Speciation and thermodynamic properties of zinc in sulfur-rich hydrothermal fluids: Insights from ab initio molecular dynamics simulations and X-ray absorption spectroscopy

      NASA Astrophysics Data System (ADS)

      Mei, Yuan; Etschmann, Barbara; Liu, Weihua; Sherman, David M.; Testemale, Denis; Brugger, Joël

      2016-04-01

      Chlorine and sulfur are the main elements involved in the complexing of metals in ore-forming fluids. The nature and thermodynamic properties of the Zn(II)-Cl complexes have been investigated by previous experimental and theoretical studies and are now well established up to high temperatures (600 °C). In contrast, the role of bisulfide complexes for zinc speciation in sulfur-bearing fluids remains poorly known, and a better understanding of Zn(II)-HS complexation is required for modeling zinc transport in magmatic and metamorphic fluids and for optimizing the hydrometallurgical processing of sulfide ores. We have conducted ab initio molecular dynamics (MD) simulations to calculate the speciation of Zn(II)-HS complexes from ambient to hydrothermal-magmatic conditions (25-600 °C, up to 2000 bar). These theoretical calculations were complemented by X-ray absorption spectroscopy (XAS) measurements of Zn(II) in HS--rich solutions at 200-500 °C and 600-1000 bar. The speciation and geometrical properties predicted by the ab initio MD simulations and the in situ XAS data are in excellent agreement. Upon heating from room temperature to 250 °C, Zn(II) speciation in HS--rich solutions shows a transition from the sixfold octahedral hexaaquo complex [Zn(H2O)6]2+ to fourfold tetrahedral [Zn(HS)n(H2O)4-n]2-n complexes (n = 1-4). Ab initio MD simulations also show that at temperatures > 250 °C, the threefold trigonal-planar [Zn(HS)3]- complex becomes increasingly stable, and predominates in S-rich solutions; in contrast, chloro-complexes display a tetrahedral geometry at 25-500 °C, while trigonal planar ZnCl3- predominates at temperatures > 500 °C. The stability constants of Zn(II)-HS complexes were calculated by thermodynamic integration of constrained ab initio MD simulations at 200, 350 and 600 °C. The stability constants generated from this study predict that zinc can be transported by HS- at high temperature in reduced, neutral to alkaline solutions, while Zn

    16. A PERSONAL PARTICLE SPECIATION SAMPLER

      EPA Science Inventory

      Dr. Susanne Hering of Aerosol Dynamics Inc and her colleagues expect to design and validate a personal monitoring sampler for particles smaller than 2.5 µm (PM2.5) that is suitable for subsequent chemical speciation work. The investigators believe the result will be a...

    17. On-line speciation analysis of inorganic arsenic in complex environmental aqueous samples by pervaporation sequential injection analysis.

      PubMed

      Boonjob, Warunya; Miró, Manuel; Kolev, Spas D

      2013-12-15

      A proof of concept of a novel pervaporation sequential injection (PSI) analysis method for automatic non-chromatographic speciation analysis of inorganic arsenic in complex aqueous samples is presented. The method is based on hydride generation of arsine followed by its on-line pervaporation-based membrane separation and CCD spectrophotometric detection. The concentrations of arsenite (As(III)) and arsenate (As(V)) are determined sequentially in a single sample zone. The leading section of the sample zone merges with a citric acid/citrate buffer solution (pH 4.5) for the selective reduction of As(III) to arsine while the trailing section of the sample zone merges with hydrochloric acid solution to allow the reduction of both As(III) and As(V) to arsine at pH lower than 1. Virtually identical analytical sensitivity is obtained for both As(III) and As(V) at this high acidity. The flow analyzer also accommodates in-line pH detector for monitoring of the acidity throughout the sample zone prior to hydride generation. Under optimal conditions the proposed PSI method is characterized by a limit of detection, linear calibration range and repeatability for As(III) of 22 μg L(-1) (3sblank level criterion), 50-1000 μg L(-1) and 3.0% at the 500 μg L(-1) level and for As(V) of 51 μg L(-1), 100-2000 μg L(-1) and 2.6% at the 500 μg L(-1) level, respectively. The method was validated with mixed As(III)/As(V) standard aqueous solutions and successfully applied to the determination of As(III) and As(V) in river water samples with elevated content of dissolved organic carbon and suspended particulate matter with no prior sample pretreatment. Excellent relative recoveries ranging from 98% to 104% were obtained for both As(III) and As(V). PMID:24209302

    18. Operational Dynamic Configuration Analysis

      NASA Technical Reports Server (NTRS)

      Lai, Chok Fung; Zelinski, Shannon

      2010-01-01

      Sectors may combine or split within areas of specialization in response to changing traffic patterns. This method of managing capacity and controller workload could be made more flexible by dynamically modifying sector boundaries. Much work has been done on methods for dynamically creating new sector boundaries [1-5]. Many assessments of dynamic configuration methods assume the current day baseline configuration remains fixed [6-7]. A challenging question is how to select a dynamic configuration baseline to assess potential benefits of proposed dynamic configuration concepts. Bloem used operational sector reconfigurations as a baseline [8]. The main difficulty is that operational reconfiguration data is noisy. Reconfigurations often occur frequently to accommodate staff training or breaks, or to complete a more complicated reconfiguration through a rapid sequence of simpler reconfigurations. Gupta quantified a few aspects of airspace boundary changes from this data [9]. Most of these metrics are unique to sector combining operations and not applicable to more flexible dynamic configuration concepts. To better understand what sort of reconfigurations are acceptable or beneficial, more configuration change metrics should be developed and their distribution in current practice should be computed. This paper proposes a method to select a simple sequence of configurations among operational configurations to serve as a dynamic configuration baseline for future dynamic configuration concept assessments. New configuration change metrics are applied to the operational data to establish current day thresholds for these metrics. These thresholds are then corroborated, refined, or dismissed based on airspace practitioner feedback. The dynamic configuration baseline selection method uses a k-means clustering algorithm to select the sequence of configurations and trigger times from a given day of operational sector combination data. The clustering algorithm selects a simplified

  1. Multigene analysis suggests ecological speciation in the fungal pathogen Claviceps purpurea

    PubMed Central

    DOUHAN, G. W.; SMITH, M. E.; HUYRN, K. L.; WESTBROOK, A.; Beerli, P.; FISHER, A. J.

    2008-01-01

    Claviceps purpurea is an important pathogen of grasses and source of novel chemical compounds. Three groups within this species (G1, G2, and G3) have been recognized based on habitat association, sclerotia and conidia morphology, and alkaloid production. These groups have further been supported by RAPD and AFLP markers, suggesting this species may be more accurately described as a species complex. However, all divergent ecotypes can coexist in sympatric populations with no obvious physical barriers to prevent gene flow. In this study, we used both phylogenetic and population genetic analyses to test for speciation within C. purpurea using DNA sequences from ITS, a RAS-like locus, and a portion of beta-tubulin. The G1 types are significantly divergent from the G2/G3 types based on each of the three loci and the combined dataset, whereas the G2/G3 types are more integrated with one another. Although the G2 and G3 lineages have not diverged as much as the G1 lineage based on DNA sequence data, the use of three DNA loci does reliably separate the G2 and G3 lineages. However, the population genetic analyses strongly suggest little to no gene flow occurring between the different ecotypes and we argue that this process is driven by adaptations to ecological habitats; G1 isolates are associated with terrestrial grasses, G2 isolates are found in wet and shady environments, and G3 isolates are found in salt marsh habitats. PMID:18373531

  2. Pneumatic flow injection analysis-tandem spectrometer system for iron speciation.

    PubMed

    Noroozifar, Meissam; Khorasani-Motlagh, Mozhgan; Akbari, Reza

    2006-01-01

    A pneumatic flow injection-tandem spectrometer system, without a delivery pump was used for the speciation of iron. In this system, the suction force of a pneumatic nebulizer of a flame absorption spectrometer was used for solution delivery through the manifold. The Fe(III) and total Fe concentrations were determined using thiocyanate ion in a UV-Vis spectrometer and a FAAS, respectively. The Fe(II) was determined by the difference. The calibration curves were linear up to 18 microg mL(-1) and 25 microg mL(-1) with detection limits of 0.09 microg mL(-1) and 0.07 microg mL(-1) for Fe(III) and Fe(II), respectively. The mid-range precision and accuracy were <2.5% and +/-3% for the two species, respectively, at a sampling rate of 120 h(-1). This system was applied for the determination of Fe(III) and Fe(II) in industrial water, natural water and spiked samples. PMID:16429790

  3. Real-time analysis of total, elemental, and total speciated mercury

    SciTech Connect

    Schlager, R.J.; Wilson, K.G.; Sappey, A.D.

    1995-11-01

    ADA Technologies, Inc., is developing a continuous emissions monitoring system that measures the concentrations of mercury in flue gas. Mercury is emitted as an air pollutant from a number of industrial processes. The largest contributors of these emissions are coal and oil combustion, municipal waste combustion, medical waste combustion, and the thermal treatment of hazardous materials. It is difficult, time consuming, and expensive to measure mercury emissions using current testing methods. Part of the difficulty lies in the fact that mercury is emitted from sources in several different forms, such as elemental mercury and mercuric chloride. The ADA analyzer measures these emissions in real time, thus providing a number of advantages over existing test methods: (1) it will provide a real-time measure of emission rates, (2) it will assure facility operators, regulators, and the public that emissions control systems are working at peak efficiency, and (3) it will provide information as to the nature of the emitted mercury (elemental mercury or speciated compounds). This update presents an overview of the CEM and describes features of key components of the monitoring system--the mercury detector, a mercury species converter, and the analyzer calibration system.

  4. Capillary electrophoretic analysis of sulfur and cyanicides speciation during cyanidation of gold complex sulfidic ores.

    PubMed

    Petre, Catalin Florin; Azizi, Abdelaaziz; Olsen, Caroline; Baçaoui, Abdelaziz; Larachi, Faïçal

    2008-12-01

    A capillary electrophoretic protocol for the separation and quantification of the most important species potentially liberated during the cyanidation of gold sulfide-rich ores was accomplished in this study. The separation of 11 ions: S2O3(2-), Cu(CN)3(2-), Fe(CN)6(4-), Fe(CN)6(3-), SCN(-), Au(CN)2(-), Ag(CN)2(-), SO4(2-), OCN(-), SO3(2-), and HS(-) was achieved using an indirect UV detection method. The robustness of the analytical protocol was tested by analyzing ions speciation during the cyanidation of two gold sulfide-rich ores. The 1-h cyanidation of the two ores released up to six complexes into solution: S2O3(2-), Cu(CN)3(2-), SCN(-), Fe(CN)6(4-), OCN(-), and SO4(2-). The mineralogy of the ore was found to influence directly the nature and the amount of the dissolved species. Conserving the cyanidation solution for 72 h after sampling resulted in 96% total sulfur recovery. These results allow us to conclude that the analytical protocol developed in this study can become very useful for the optimization of precious-metals cyanidation plants. PMID:19009541

  5. A sensitive flow-based procedure for spectrophotometric speciation analysis of inorganic bromine in waters.

    PubMed

    Rocha, Diogo L; Machado, Marcos C; Melchert, Wanessa R

    2014-11-01

    A flow-based system with solenoid micro-pumps and long path-length spectrophotometry for bromate and bromide determination in drinking water is proposed. The method is based on the formation of an unstable dye from the reaction between bromate, 2-(5-dibromo-2-pyridylazo)-5-(diethylamino)phenol (5-Br-PADAP) and thiocyanate ions. A multivariate optimization was carried out. A linear response was observed between 5.0 and 100 µg L(-1) BrO3(-) and the detection limit was estimated as 2.0 µg L(-1) (99.7% confidence level). The coefficient of variation (n=20) and sampling rate were estimated as 1.0% and 40 determinations per hour, respectively. Reagent consumption was estimated as 0.17 µg of 5-Br-PADAP and 230 μg of NaSCN per measurement, generating 6.0 mL of waste. Bromide determination was carried out after UV-assisted conversion with K2S2O8 using 300 µL of sample within the range 20-400 µg L(-1) Br(-). The generated bromate was then determined by the proposed flow system. The results for tap and commercial mineral water samples agreed with those obtained with the reference procedure at the 95% confidence level. The proposed procedure is therefore a sensitive, environmentally friendly and reliable alternative for inorganic bromine speciation. PMID:25127569

  6. Speciation analysis of inorganic antimony in sediment samples from São Paulo Estuary, Bahia State, Brazil.

    PubMed

    Silva, Mario Marques; Leao, Danilo Junqueira; Moreira, Ícaro Thiago Andrade; de Oliveira, Olívia Maria Cordeiro; de Souza Queiroz, Antônio Fernando; Ferreira, Sergio Luis Costa

    2015-06-01

    This paper proposes an extraction procedure for the speciation analysis of inorganic antimony in sediment samples using slurry sampling and hydride generation atomic absorption spectrometry. The optimization step of extraction of the species was performed employing a full two-level factorial design (2(3)) and a Box-Behnken matrix where the studied factors in both experiments were: extraction temperature, ultrasonic radiation time, and hydrochloric acid concentration. Using the optimized conditions, antimony species can be extracted in closed system using a 6.0 M hydrochloric acid solution at temperature of 70 °C and an ultrasonic radiation time of 20 min. The determination of antimony is performed in presence of 2.0 M hydrochloric acid solution using HG AAS by external calibration technique with limits of detection and quantification of 5.6 and 19.0 ng L(-1) and a precision expressed as relative standard deviation of 5.6 % for an antimony solution with concentration of 6.0 μg L(-1). The accuracy of the method was confirmed by analysis of two certified reference materials of sediments. For a sample mass of sediment of 0.20 g, the limits of detection and quantification obtained were 0.70 and 2.34 ng g(-1), respectively. During speciation analysis, antimony(III) is determined in presence of citrate, while total antimony is quantified after reduction of antimony(V) to antimony(III) using potassium iodide and ascorbic acid. The method was applied for analysis of six sediment samples collected in São Paulo Estuary (Bahia State, Brazil). The antimony contents obtained varied from 45.3 to 89.1 ng g(-1) for total antimony and of 17.7 to 31.4 ng g(-1) for antimony(III). These values are agreeing with other data reported by the literature for this element in uncontaminated sediment samples. PMID:25537284

  7. Elemental bioimaging and speciation analysis for the investigation of Wilson's disease using μXRF and XANES.

    PubMed

    Hachmöller, Oliver; Buzanich, Ana Guilherme; Aichler, Michaela; Radtke, Martin; Dietrich, Dörthe; Schwamborn, Kristina; Lutz, Lisa; Werner, Martin; Sperling, Michael; Walch, Axel; Karst, Uwe

    2016-07-13

    A liver biopsy specimen from a Wilson's disease (WD) patient was analyzed by means of micro-X-ray fluorescence (μXRF) spectroscopy to determine the elemental distribution. First, bench-top μXRF was utilized for a coarse scan of the sample under laboratory conditions. The resulting distribution maps of copper and iron enabled the determination of a region of interest (ROI) for further analysis. In order to obtain more detailed elemental information, this ROI was analyzed by synchrotron radiation (SR)-based μXRF with a beam size of 4 μm offering a resolution at the cellular level. Distribution maps of additional elements to copper and iron like zinc and manganese were obtained due to a higher sensitivity of SR-μXRF. In addition to this, X-ray absorption near edge structure spectroscopy (XANES) was performed to identify the oxidation states of copper in WD. This speciation analysis indicated a mixture of copper(i) and copper(ii) within the WD liver tissue. PMID:26999628

  8. Mercury speciation analysis in human hair by species-specific isotope-dilution using GC-ICP-MS.

    PubMed

    Laffont, Laure; Maurice, Laurence; Amouroux, David; Navarro, Patricia; Monperrus, Mathilde; Sonke, Jeroen E; Behra, Philippe

    2013-03-01

    We optimized a mercury (Hg) speciation extraction method for human hair in combination with species-specific isotope-dilution analysis by gas chromatography-inductively coupled plasma-mass spectrometry (GC-ICP-MS). The method was validated on human hair reference material RM (IAEA-086), which is recommended for analysis of monomethylmercury (MMHg) and inorganic mercury (IHg). Three reagents, hydrochloric acid (HCl), nitric acid (HNO3), and tetramethylammonium hydroxide (TMAH), and three extraction procedures, at ambient temperature for 12 h, microwave-assisted at 75 °C for 6 min, and oven heated at 80 °C for 2 h were tested. Extraction efficiency, recovery, and potential species transformations were evaluated for each method. The most efficient procedures, with recovery of ~90 % for each species with limited demethylation (<5 %) and methylation (0 %), were HNO3 digestion, irrespective of temperature, and microwave-assisted TMAH extraction. Acidic extraction with HCl induces significant demethylation, with production of artifacts. To correct for potential demethylation artifacts we recommend spiking with isotopically enriched standards before the extraction step. PMID:22669307

  9. Iron Speciation in Urban Dust

    SciTech Connect

    E Elzinga; Y Gao; J Fitts; R Tappero

    2011-12-31

    An improved understanding of anthropogenic impacts on ocean fertility requires knowledge of anthropogenic dust mineralogy and associated Fe speciation as a critical step toward developing Fe solubility models constrained by mineralogical composition. This study explored the utility of micro-focused X-ray absorption spectroscopy ({mu}-XAS) in characterizing the speciation of Fe in urban dust samples. A micro-focused beam of 10 x 7 {micro}m made possible the measurement of the Fe K edge XAS spectra of individual dust particles in the PM5.6 size fraction collected in Newark, New Jersey, USA. Spectral analysis indicated the presence of mixtures of Fe-containing minerals within individual dust particles; we observed significant magnetite content along with other Fe(III)-(hydr)oxide minerals which could not be conclusively identified. Our data indicate that detailed quantitative determination of Fe speciation requires extended energy scans to constrain the types and relative abundance of Fe species present. We observe heterogeneity in Fe speciation at the dust particle level, which underscores the importance of analyzing a statistically adequate number of particles within each dust sample. Where possible, {mu}-XAS measurements should be complemented with additional characterization techniques such as {mu}-XRD and bulk XAS to obtain a comprehensive picture of the Fe speciation in dust materials. X-ray microprobes should be used to complement bulk methods used to determine particle composition, methods that fail to record particle heterogeneity.

  10. SPECIATE - EPA'S DATABASE OF SPECIATED EMISSION PROFILES

    EPA Science Inventory

    SPECIATE is the U.S. Environmental Protection Agency's (EPA) repository of total organic compound (TOC) and particulate matter (PM) speciation profiles for emissions from air pollution sources. The data base has recently been updated and an associated report has recently been re...

  11. Dynamic analysis of process reactors

    SciTech Connect

    Shadle, L.J.; Lawson, L.O.; Noel, S.D.

    1995-06-01

    The approach and methodology of conducting a dynamic analysis is presented in this poster session in order to describe how this type of analysis can be used to evaluate the operation and control of process reactors. Dynamic analysis of the PyGas{trademark} gasification process is used to illustrate the utility of this approach. PyGas{trademark} is the gasifier being developed for the Gasification Product Improvement Facility (GPIF) by Jacobs-Siffine Engineering and Riley Stoker. In the first step of the analysis, process models are used to calculate the steady-state conditions and associated sensitivities for the process. For the PyGas{trademark} gasifier, the process models are non-linear mechanistic models of the jetting fluidized-bed pyrolyzer and the fixed-bed gasifier. These process sensitivities are key input, in the form of gain parameters or transfer functions, to the dynamic engineering models.

  12. Ultrasensitive Speciation Analysis of Mercury in Rice by Headspace Solid Phase Microextraction Using Porous Carbons and Gas Chromatography-Dielectric Barrier Discharge Optical Emission Spectrometry.

    PubMed

    Lin, Yao; Yang, Yuan; Li, Yuxuan; Yang, Lu; Hou, Xiandeng; Feng, Xinbin; Zheng, Chengbin

    2016-03-01

    Rice consumption is a primary pathway for human methylmercury (MeHg) exposure in inland mercury mining areas of Asia. In addition, the use of iodomethane, a common fumigant that significantly accelerates the methylation of mercury in soil under sunlight, could increase the MeHg exposure from rice. Conventional hyphenated techniques used for mercury speciation analysis are usually too costly for most developing countries. Consequently, there is an increased interest in the development of sensitive and inexpensive methods for the speciation of mercury in rice. In this work, gas chromatography (GC) coupled to dielectric barrier discharge optical emission spectrometry (DBD-OES) was developed for the speciation analysis of mercury in rice. Prior to GC-DBD-OES analysis, mercury species were derivatized to their volatile species with NaBPh4 and preconcentrated by headspace solid phase microextraction using porous carbons. Limits of detection of 0.5 μg kg(-1) (0.16 ng), 0.75 μg kg(-1) (0.24 ng), and 1.0 μg kg(-1) (0.34 ng) were obtained for Hg(2+), CH3Hg(+), and CH3CH2Hg(+), respectively, with relative standard deviations (RSDs) better than 5.2% and 6.8% for one fiber or fiber-to-fiber mode, respectively. Recoveries of 90-105% were obtained for the rice samples, demonstrating the applicability of the proposed technique. Owing to the small size, low power, and low gas consumption of DBD-OES as well as efficient extraction of mercury species by porous carbons headspace solid phase micro-extraction, the proposed technique provides several advantages including compactness, cost-effectiveness, and potential to couple with miniature GC to accomplish the field speciation of mercury in rice compared to conventional hyphenated techniques. PMID:26828416

  13. Tracing gadolinium-based contrast agents from surface water to drinking water by means of speciation analysis.

    PubMed

    Birka, Marvin; Wehe, Christoph A; Hachmöller, Oliver; Sperling, Michael; Karst, Uwe

    2016-04-01

    In recent decades, a significant amount of anthropogenic gadolinium has been released into the environment as a result of the broad application of contrast agents for magnetic resonance imaging (MRI). Since this anthropogenic gadolinium anomaly has also been detected in drinking water, it has become necessary to investigate the possible effect of drinking water purification on these highly polar microcontaminats. Therefore, a novel highly sensitive method for speciation analysis of gadolinium is presented. For that purpose, the hyphenation of hydrophilic interaction liquid chromatography (HILIC) and inductively coupled plasma-mass spectrometry (ICP-MS) was employed. In order to enhance the detection power, sample introduction was carried out by ultrasonic nebulization. In combination with a novel HILIC method using a diol-based stationary phase, it was possible to achieve superior limits of detection for frequently applied gadolinium-based contrast agents below 20pmol/L. With this method, the contrast agents Gd-DTPA, Gd-DOTA and Gd-BT-DO3A were determined in concentrations up to 159pmol/L in samples from several waterworks in a densely populated region of Germany alongside the river Ruhr as well as from a waterworks near a catchment lake. Thereby, the direct impact of anthropogenic gadolinium species being present in the surface water on the amount of anthropogenic gadolinium in drinking water was shown. There was no evidence for the degradation of contrast agents, the release of Gd(3+) or the presence of further Gd species. PMID:26931429

  14. Measurement, time series analysis and source apportionment of inorganic and organic speciated PM(2.5) air pollution in Denver

    NASA Astrophysics Data System (ADS)

    Dutton, Steven James

    Particulate air pollution has demonstrated significant health effects ranging from worsening of asthma to increased rates of respiratory and cardiopulmonary mortality. These results have prompted the US-EPA to include particulate matter (PM) as one of the six criteria air pollutants regulated under the Clean Air Act. The diverse chemical make-up and physical characteristics of PM make it a challenging pollutant to characterize and regulate. Particulate matter less than 2.5 microns in diameter (PM2.5) has the ability to travel deep into the lungs and therefore has been linked with some of the more significant health effects. The toxicity of any given particle is likely dependent on its chemical composition. The goal of this project has been to chemically characterize a long time series of PM 2.5 measurements collected at a receptor site in Denver to a level of detail that has not been done before on this size data set. This has involved characterization of inorganic ions using ion chromatography, total elemental and organic carbon using thermal optical transmission, and organic molecular marker species using gas chromatography-mass spectrometry. Methods have been developed to allow for daily measurement and speciation for these compounds over a six year period. Measurement methods, novel approaches to uncertainty estimation, time series analysis, spectral and pattern analyses and source apportionment using two multivariate factor analysis models are presented. Analysis results reveal several natural and anthropogenic sources contributing to PM2.5 in Denver. The most distinguishable sources are motor vehicles and biomass combustion. This information will be used in a health effect analysis as part of a larger study called the Denver Aerosol Sources and Health (DASH) study. Such results will inform regulatory decisions and may help create a better understanding of the underlying mechanisms for the observed adverse health effects associated with PM2.5.

  15. Flexible rotor dynamics analysis

    NASA Technical Reports Server (NTRS)

    Shen, F. A.

    1973-01-01

    A digital computer program was developed to analyze the general nonaxisymmetric and nonsynchronous transient and steady-state rotor dynamic performance of a bending- and shear-wise flexible rotor-bearing system under various operating conditions. The effects of rotor material mechanical hysteresis, rotor torsion flexibility, transverse effects of rotor axial and torsional loading and the anisotropic, in-phase and out-of-phase bearing stiffness and damping force and moment coefficients were included in the program to broaden its capability. An optimum solution method was found and incorporated in the computer program. Computer simulation of experimental data was made and qualitative agreements observed. The mathematical formulations, computer program verification, test data simulation, and user instruction was presented and discussed.

  16. Speciation genetics: current status and evolving approaches

    PubMed Central

    Wolf, Jochen B. W.; Lindell, Johan; Backström, Niclas

    2010-01-01

    The view of species as entities subjected to natural selection and amenable to change put forth by Charles Darwin and Alfred Wallace laid the conceptual foundation for understanding speciation. Initially marred by a rudimental understanding of hereditary principles, evolutionists gained appreciation of the mechanistic underpinnings of speciation following the merger of Mendelian genetic principles with Darwinian evolution. Only recently have we entered an era where deciphering the molecular basis of speciation is within reach. Much focus has been devoted to the genetic basis of intrinsic postzygotic isolation in model organisms and several hybrid incompatibility genes have been successfully identified. However, concomitant with the recent technological advancements in genome analysis and a newfound interest in the role of ecology in the differentiation process, speciation genetic research is becoming increasingly open to non-model organisms. This development will expand speciation research beyond the traditional boundaries and unveil the genetic basis of speciation from manifold perspectives and at various stages of the splitting process. This review aims at providing an extensive overview of speciation genetics. Starting from key historical developments and core concepts of speciation genetics, we focus much of our attention on evolving approaches and introduce promising methodological approaches for future research venues. PMID:20439277

  17. Simultaneous speciation of arsenic, selenium, and chromium: Species stability, sample preservation, and analysis of ash and soil leachates

    USGS Publications Warehouse

    Wolf, R.E.; Morman, S.A.; Hageman, P.L.; Hoefen, T.M.; Plumlee, G.S.

    2011-01-01

    An analytical method using high-performance liquid chromatography separation with inductively coupled plasma mass spectrometry (ICP-MS) detection previously developed for the determination of Cr(III) and Cr(VI) has been adapted to allow the determination of As(III), As(V), Se(IV), Se(VI), Cr(III), and Cr(VI) under the same chromatographic conditions. Using this method, all six inorganic species can be determined in less than 3 min. A dynamic reaction cell (DRC)-ICP-MS system was used to detect the species eluted from the chromatographic column in order to reduce interferences. A variety of reaction cell gases and conditions may be utilized with the DRC-ICP-MS, and final selection of conditions is determined by data quality objectives. Results indicated all starting standards, reagents, and sample vials should be thoroughly tested for contamination. Tests on species stability indicated that refrigeration at 10 ??C was preferential to freezing for most species, particularly when all species were present, and that sample solutions and extracts should be analyzed as soon as possible to eliminate species instability and interconversion effects. A variety of environmental and geological samples, including waters and deionized water [leachates] and simulated biological leachates from soils and wildfire ashes have been analyzed using this method. Analytical spikes performed on each sample were used to evaluate data quality. Speciation analyses were conducted on deionized water leachates and simulated lung fluid leachates of ash and soils impacted by wildfires. These results show that, for leachates containing high levels of total Cr, the majority of the chromium was present in the hexavalent Cr(VI) form. In general, total and hexavalent chromium levels for samples taken from burned residential areas were higher than those obtained from non-residential forested areas. Arsenic, when found, was generally in the more oxidized As(V) form. Selenium (IV) and (VI) were present

  18. Simultaneous speciation of arsenic, selenium, and chromium: species, stability, sample preservation, and analysis of ash and soil leachates

    USGS Publications Warehouse

    Wolf, Ruth E.; Morman, Suzette A.; Hageman, Philip L.; Hoefen, Todd M.; Plumlee, Geoffrey S.

    2011-01-01

    An analytical method using high-performance liquid chromatography separation with inductively coupled plasma mass spectrometry (ICP-MS) detection previously developed for the determination of Cr(III) and Cr(VI) has been adapted to allow the determination of As(III), As(V), Se(IV), Se(VI), Cr(III), and Cr(VI) under the same chromatographic conditions. Using this method, all six inorganic species can be determined in less than 3 min. A dynamic reaction cell (DRC)-ICP-MS system was used to detect the species eluted from the chromatographic column in order to reduce interferences. A variety of reaction cell gases and conditions may be utilized with the DRC-ICP-MS, and final selection of conditions is determined by data quality objectives. Results indicated all starting standards, reagents, and sample vials should be thoroughly tested for contamination. Tests on species stability indicated that refrigeration at 10° C was preferential to freezing for most species, particularly when all species were present, and that sample solutions and extracts should be analyzed as soon as possible to eliminate species instability and interconversion effects. A variety of environmental and geological samples, including waters and deionized water [leachates] and simulated biological leachates from soils and wildfire ashes have been analyzed using this method. Analytical spikes performed on each sample were used to evaluate data quality. Speciation analyses were conducted on deionized water leachates and simulated lung fluid leachates of ash and soils impacted by wildfires. These results show that, for leachates containing high levels of total Cr, the majority of the chromium was present in the hexavalent Cr(VI) form. In general, total and hexavalent chromium levels for samples taken from burned residential areas were higher than those obtained from non-residential forested areas. Arsenic, when found, was generally in the more oxidized As(V) form. Selenium (IV) and (VI) were present

  19. Cytogenetic and symbiont analysis of five members of the B. dorsalis complex (Diptera, Tephritidae): no evidence of chromosomal or symbiont-based speciation events.

    PubMed

    Augustinos, Antonios A; Drosopoulou, Elena; Gariou-Papalexiou, Aggeliki; Asimakis, Elias D; Cáceres, Carlos; Tsiamis, George; Bourtzis, Kostas; Penelope Mavragani-Tsipidou; Zacharopoulou, Antigone

    2015-01-01

    The Bactrocera dorsalis species complex, currently comprising about 90 entities has received much attention. During the last decades, considerable effort has been devoted to delimiting the species of the complex. This information is of great importance for agriculture and world trade, since the complex harbours several pest species of major economic importance and other species that could evolve into global threats. Speciation in Diptera is usually accompanied by chromosomal rearrangements, particularly inversions that are assumed to reduce/eliminate gene flow. Other candidates currently receiving much attention regarding their possible involvement in speciation are reproductive symbionts, such as Wolbachia, Spiroplasma, Arsenophonus, Rickettsia and Cardinium. Such symbionts tend to spread quickly through natural populations and can cause a variety of phenotypes that promote pre-mating and/or post-mating isolation and, in addition, can affect the biology, physiology, ecology and evolution of their insect hosts in various ways. Considering all these aspects, we present: (a) a summary of the recently gained knowledge on the cytogenetics of five members of the Bactrocera dorsalis complex, namely Bactrocera dorsalis s.s., Bactrocera invadens, Bactrocera philippinensis, Bactrocera papayae and Bactrocera carambolae, supplemented by additional data from a Bactrocera dorsalis s.s. colony from China, as well as by a cytogenetic comparison between the dorsalis complex and the genetically close species, Bactrocera tryoni, and, (b) a reproductive symbiont screening of 18 different colonized populations of these five taxa. Our analysis did not reveal any chromosomal rearrangements that could differentiate among them. Moreover, screening for reproductive symbionts was negative for all colonies derived from different geographic origins and/or hosts. There are many different factors that can lead to speciation, and our data do not support chromosomal and/or symbiotic

  20. Cytogenetic and symbiont analysis of five members of the B. dorsalis complex (Diptera, Tephritidae): no evidence of chromosomal or symbiont-based speciation events

    PubMed Central

    Augustinos, Antonios A.; Drosopoulou, Elena; Gariou-Papalexiou, Aggeliki; Asimakis, Elias D.; Cáceres, Carlos; Tsiamis, George; Bourtzis, Kostas; Penelope Mavragani-Tsipidou; Zacharopoulou, Antigone

    2015-01-01

    Abstract The Bactrocera dorsalis species complex, currently comprising about 90 entities has received much attention. During the last decades, considerable effort has been devoted to delimiting the species of the complex. This information is of great importance for agriculture and world trade, since the complex harbours several pest species of major economic importance and other species that could evolve into global threats. Speciation in Diptera is usually accompanied by chromosomal rearrangements, particularly inversions that are assumed to reduce/eliminate gene flow. Other candidates currently receiving much attention regarding their possible involvement in speciation are reproductive symbionts, such as Wolbachia, Spiroplasma, Arsenophonus, Rickettsia and Cardinium. Such symbionts tend to spread quickly through natural populations and can cause a variety of phenotypes that promote pre-mating and/or post-mating isolation and, in addition, can affect the biology, physiology, ecology and evolution of their insect hosts in various ways. Considering all these aspects, we present: (a) a summary of the recently gained knowledge on the cytogenetics of five members of the Bactrocera dorsalis complex, namely Bactrocera dorsalis s.s., Bactrocera invadens, Bactrocera philippinensis, Bactrocera papayae and Bactrocera carambolae, supplemented by additional data from a Bactrocera dorsalis s.s. colony from China, as well as by a cytogenetic comparison between the dorsalis complex and the genetically close species, Bactrocera tryoni, and, (b) a reproductive symbiont screening of 18 different colonized populations of these five taxa. Our analysis did not reveal any chromosomal rearrangements that could differentiate among them. Moreover, screening for reproductive symbionts was negative for all colonies derived from different geographic origins and/or hosts. There are many different factors that can lead to speciation, and our data do not support chromosomal and/or symbiotic

  1. Speciation analysis of mercury in water samples using dispersive liquid-liquid microextraction combined with high-performance liquid chromatography.

    PubMed

    Gao, Zhongben; Ma, Xiaoguo

    2011-09-19

    A novel approach for preconcentration and speciation analysis of trace amount of mercury from water samples was proposed by dispersive liquid-liquid microextraction (DLLME) coupled to high performance liquid chromatography with diode array detection (HPLC-DAD). Mercury species (Hg(2+), methylmercury (MeHg(+)) and phenylmercury (PhHg(+))) were complexed with dithizone (DZ) to form hydrophobic chelates and then extracted into the fine drops of extraction solvent dispersed in the aqueous sample by dispersive solvent. After extraction, the sedimented phase was analyzed by HPLC-DAD. Some important parameters affecting the DLLME such as extraction solvent and dispersive solvent type and volume, concentration of dithizone solution, sample pH, extraction time and salt effect were investigated. Ionic liquid 1-hexyl-3-methylimidazolium hexafluorophosphate ([HMIM][PF(6)]) was found to be a suitable extractant for the chelates. Under the optimized conditions (extraction solvent: 70 μL of ionic liquid 1-hexyl-3-methylimidazolium hexafluorophosphate ([HMIM][PF(6)]); dispersive solvent: 0.75 mL of methanol containing dithizone (0.02%, m/v); pH: 4; extraction time: 5 min; and without salt addition), the limits of detection for Hg(2+), MeHg(+) and PhHg(+) were 0.32, 0.96 and 1.91 μg L(-1) (SN(-1)=3) respectively, and the relative standard deviation (RSD) was between 4.1 and 7.3% (n=5). Three real water samples (tap water, river water and lake water) spiked with mercury species were detected by the developed method, and the relative recoveries obtained for Hg(2+), MeHg(+) and PhHg(+) were 89.6-101.3%, 85.6-102.0% and 81.3-97.6%, respectively. PMID:21819859

  2. Catalysis in a Cage: Condition-Dependent Speciation and Dynamics of Exchanged Cu Cations in SSZ-13 Zeolites.

    PubMed

    Paolucci, Christopher; Parekh, Atish A; Khurana, Ishant; Di Iorio, John R; Li, Hui; Albarracin Caballero, Jonatan D; Shih, Arthur J; Anggara, Trunojoyo; Delgass, W Nicholas; Miller, Jeffrey T; Ribeiro, Fabio H; Gounder, Rajamani; Schneider, William F

    2016-05-11

    The relationships among the macroscopic compositional parameters of a Cu-exchanged SSZ-13 zeolite catalyst, the types and numbers of Cu active sites, and activity for the selective catalytic reduction (SCR) of NOx with NH3 are established through experimental interrogation and computational analysis of materials across the catalyst composition space. Density functional theory, stochastic models, and experimental characterizations demonstrate that within the synthesis protocols applied here and across Si:Al ratios, the volumetric density of six-membered-rings (6MR) containing two Al (2Al sites) is consistent with a random Al siting in the SSZ-13 lattice subject to Löwenstein's rule. Further, exchanged Cu(II) ions first populate these 2Al sites before populating remaining unpaired, or 1Al, sites as Cu(II)OH. These sites are distinguished and enumerated ex situ through vibrational and X-ray absorption spectroscopies (XAS) and chemical titrations. In situ and operando XAS follow Cu oxidation state and coordination environment as a function of environmental conditions including low-temperature (473 K) SCR catalysis and are rationalized through first-principles thermodynamics and ab initio molecular dynamics. Experiment and theory together reveal that the Cu sites respond sensitively to exposure conditions, and in particular that Cu species are solvated and mobilized by NH3 under SCR conditions. While Cu sites are spectroscopically and chemically distinct away from these conditions, they exhibit similar turnover rates, apparent activation energies and apparent reaction orders at the SCR conditions, even on zeolite frameworks other than SSZ13. PMID:27070199

  3. Selenium speciation analysis of Misgurnus anguillicaudatus selenoprotein by HPLC-ICP-MS and HPLC-ESI-MS/MS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Analytical methods for selenium (Se) speciation were developed using high performance liquid chromatography (HPLC) coupled to either inductively coupled plasma mass spectrometry (ICP-MS) or electrospray ionization tandem mass spectrometry (ESI-MS/MS). Separations of selenomethionine (Se-Met) and sel...

  4. Arsenic speciation and fucoxanthin analysis from seaweed dietary supplements using LC-MS

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Inorganic species are considered more toxic to humans than organic arsenic and total arsenic. Analysis of total arsenic in metallic form, organic and inorganic arsenic species from seaweeds and dietary supplements using LC-ICP-MS was developed. Solvent extraction with sonication and microwave extr...

  5. Simultaneous speciation analysis of chromate, molybdate, tungstate and vanadate in welding fume alkaline extracts by HPLC-ICP-MS.

    PubMed

    Ščančar, Janez; Berlinger, Balázs; Thomassen, Yngvar; Milačič, Radmila

    2015-09-01

    A novel analytical procedure was developed for the simultaneous speciation analysis of chromate, molybdate, tungstate and vanadate by anion-exchange high performance liquid chromatography hyphenated to inductively coupled plasma mass spectrometry (HPLC-ICP-MS). Linear gradient elution from 100% water to 100% 0.7 M NaCl was applied for chromatographic separation of metal species. In standard aqueous solution at neutral pH molybdate, tungstate and vanadate exist in several aqueous species, while chromate is present as a single CrO4(2-) species. Consequently, only chromate can be separated from this solution in a sharp chromatographic peak. For obtaining sharp chromatographic peaks for molybdate, tungstate and vanadate, the pH of aqueous standard solutions was raised to 12. At highly alkaline conditions single CrO4(2-), MoO4(2-) and WO4(2-) are present and were eluted in sharp chromatographic peaks, while VO4(3-) species, which predominates at pH 12 was eluted in slightly broaden peak. In a mixture of aqueous standard solutions (pH 12) chromate, molybdate, tungstate and vanadate were eluted at retention times from 380 to 420 s, 320 to 370 s, 300 to 350 s and 240 to 360 s, respectively. Eluted species were simultaneously detected on-line by ICP-MS recording m/z 52, 95, 182 and 51. The developed procedure was successfully applied to the analysis of leachable concentrations of chromate, molybdate, tungstate and vanadate in alkaline extracts (2% NaOH+3% Na2CO3) of manual metal arc (MMA) welding fumes loaded on filters. Good repeatability and reproducibility of measurement (RSD±3.0%) for the investigated species were obtained in both aqueous standard solutions (pH 12) and in alkaline extracts of welding fumes. Low limits of detection (LODs) were found for chromate (0.02 ng Cr mL(-1)), molybdate (0.1 ng Mo mL(-1)), tungstate (0.1 ng W mL(-1)) and vanadate (0.2 ng V mL(-1)). The accuracy of analytical procedure for the determination of chromate was checked by analysis of

  6. Heavy metal speciation in various grain sizes of industrially contaminated street dust using multivariate statistical analysis.

    PubMed

    Yıldırım, Gülşen; Tokalıoğlu, Şerife

    2016-02-01

    A total of 36 street dust samples were collected from the streets of the Organised Industrial District in Kayseri, Turkey. This region includes a total of 818 work places in various industrial areas. The modified BCR (the European Community Bureau of Reference) sequential extraction procedure was applied to evaluate the mobility and bioavailability of trace elements (Cd, Co, Cr, Cu, Fe, Mn, Ni, Pb and Zn) in street dusts of the study area. The BCR was classified into three steps: water/acid soluble fraction, reducible and oxidisable fraction. The remaining residue was dissolved by using aqua regia. The concentrations of the metals in street dust samples were determined by flame atomic absorption spectrometry. Also the effect of the different grain sizes (<38µm, 38-53µm and 53-74µm) of the 36 street dust samples on the mobility of the metals was investigated using the modified BCR procedure. The mobility sequence based on the sum of the first three phases (for <74µm grain size) was: Cd (71.3)>Cu (48.9)>Pb (42.8)=Cr (42.1)>Ni (41.4)>Zn (40.9)>Co (36.6)=Mn (36.3)>Fe (3.1). No significant difference was observed among metal partitioning for the three particle sizes. Correlation, principal component and cluster analysis were applied to identify probable natural and anthropogenic sources in the region. The principal component analysis results showed that this industrial district was influenced by traffic, industrial activities, air-borne emissions and natural sources. The accuracy of the results was checked by analysis of both the BCR-701 certified reference material and by recovery studies in street dust samples. PMID:26595510

  7. Speciation of Eu3+ bound to humic substances by time-resolved laser fluorescence spectroscopy (TRLFS) and parallel factor analysis (PARAFAC)

    NASA Astrophysics Data System (ADS)

    Lukman, Steven; Saito, Takumi; Aoyagi, Noboru; Kimura, Takaumi; Nagasaki, Shinya

    2012-07-01

    The bioavailability and toxicity of metal ions including radionuclides in the biosphere are greatly influenced by their speciation. Humic substances (HSs) are important constituents of various soil and water systems and have significant impact on the speciation and mobility of metal ions because of their high affinity to metal ions. In this study, the speciation of europium (Eu3+), a chemical homologue of trivalent actinides, with HSs collected from various origins was investigated by time-resolved laser fluorescence spectroscopy (TRLFS). The difficulties associated with the separation of the contribution of different Eu3+ species due to overlapping spectra or similar fluorescence lifetimes were addressed and mitigated by applying a multi-mode factor analysis, parallel factor analysis (PARAFAC), which resulted in the number, spectra, decay curves and relative fluorescence intensity profiles of different Eu3+ species. Subsequently, the interpretation of the Eu3+ species, was tackled by principal component analysis (PCA) and partial linear square (PLS) regression to deduce the nature of the Eu3+ species by taking into account the physicochemical properties of the HSs. Three factors corresponding to different Eu3+ species were obtained at 70 μM Eu3+ for all HSs investigated except for one humic acid. One of the factors corresponded to free Eu3+ ion interacting with HSs via diffusion. The remaining two factors were thought to be Eu3+ bound to HSs: one bound to acidic functional groups of HSs and the other to the sites of HSs influenced by the carbon backbone structures. It was also found that the latter factor exhibited strong energy transfer from the excited Eu3+ center to HSs. At lower Eu3+ concentration (10 μM), two factors having similar fluorescent characteristics to those of the second and third factors were obtained.

  8. Arsenic speciation in natural sulfidic geothermal waters

    NASA Astrophysics Data System (ADS)

    Keller, Nicole S.; Stefánsson, Andri; Sigfússon, Bergur

    2014-10-01

    -order estimation of the dominant species, discrepancies between the model results and the field data highlight the fact that for such dynamic chemical systems the exact speciation cannot be calculated, thus on-site and preferentially in-situ analysis is of crucial importance.

  9. Analysis of complete mitochondrial genome sequences increases phylogenetic resolution of bears (Ursidae), a mammalian family that experienced rapid speciation

    PubMed Central

    Yu, Li; Li, Yi-Wei; Ryder, Oliver A; Zhang, Ya-Ping

    2007-01-01

    Background Despite the small number of ursid species, bear phylogeny has long been a focus of study due to their conservation value, as all bear genera have been classified as endangered at either the species or subspecies level. The Ursidae family represents a typical example of rapid evolutionary radiation. Previous analyses with a single mitochondrial (mt) gene or a small number of mt genes either provide weak support or a large unresolved polytomy for ursids. We revisit the contentious relationships within Ursidae by analyzing complete mt genome sequences and evaluating the performance of both entire mt genomes and constituent mtDNA genes in recovering a phylogeny of extremely recent speciation events. Results This mitochondrial genome-based phylogeny provides strong evidence that the spectacled bear diverged first, while within the genus Ursus, the sloth bear is the sister taxon of all the other five ursines. The latter group is divided into the brown bear/polar bear and the two black bears/sun bear assemblages. These findings resolve the previous conflicts between trees using partial mt genes. The ability of different categories of mt protein coding genes to recover the correct phylogeny is concordant with previous analyses for taxa with deep divergence times. This study provides a robust Ursidae phylogenetic framework for future validation by additional independent evidence, and also has significant implications for assisting in the resolution of other similarly difficult phylogenetic investigations. Conclusion Identification of base composition bias and utilization of the combined data of whole mitochondrial genome sequences has allowed recovery of a strongly supported phylogeny that is upheld when using multiple alternative outgroups for the Ursidae, a mammalian family that underwent a rapid radiation since the mid- to late Pliocene. It remains to be seen if the reliability of mt genome analysis will hold up in studies of other difficult phylogenetic

  10. Complex dynamics of text analysis

    NASA Astrophysics Data System (ADS)

    Ke, Xiaohua; Zeng, Yongqiang; Ma, Qinghua; Zhu, Lin

    2014-12-01

    This paper presents a novel method for the analysis of nonlinear text quality in Chinese language. Texts produced by university students in China were represented as scale-free networks (word adjacency model), from which typical network features such as the in/outdegree, clustering coefficient and network dynamics were obtained. The method integrates the classical concepts of network feature representation and text quality series variation. The analytical and numerical scheme leads to a parameter space representation that constitutes a valid alternative to represent the network features. The results reveal that complex network features of different text qualities can be clearly revealed and applied to potential applications in other instances of text analysis.

  11. Speciation Analysis of Arsenic by Selective Hydride Generation-Cryotrapping-Atomic Fluorescence Spectrometry with Flame-in-Gas-Shield Atomizer: Achieving Extremely Low Detection Limits with Inexpensive Instrumentation

    PubMed Central

    2015-01-01

    This work describes the method of a selective hydride generation-cryotrapping (HG-CT) coupled to an extremely sensitive but simple in-house assembled and designed atomic fluorescence spectrometry (AFS) instrument for determination of toxicologically important As species. Here, an advanced flame-in-gas-shield atomizer (FIGS) was interfaced to HG-CT and its performance was compared to a standard miniature diffusion flame (MDF) atomizer. A significant improvement both in sensitivity and baseline noise was found that was reflected in improved (4 times) limits of detection (LODs). The yielded LODs with the FIGS atomizer were 0.44, 0.74, 0.15, 0.17 and 0.67 ng L–1 for arsenite, total inorganic, mono-, dimethylated As and trimethylarsine oxide, respectively. Moreover, the sensitivities with FIGS and MDF were equal for all As species, allowing for the possibility of single species standardization with arsenate standard for accurate quantification of all other As species. The accuracy of HG-CT-AFS with FIGS was verified by speciation analysis in two samples of bottled drinking water and certified reference materials, NRC CASS-5 (nearshore seawater) and SLRS-5 (river water) that contain traces of methylated As species. As speciation was in agreement with results previously reported and sums of all quantified species corresponded with the certified total As. The feasibility of HG-CT-AFS with FIGS was also demonstrated by the speciation analysis in microsamples of exfoliated bladder epithelial cells isolated from human urine. The results for the sums of trivalent and pentavalent As species corresponded well with the reference results obtained by HG-CT-ICPMS (inductively coupled plasma mass spectrometry). PMID:25300934

  12. Speciation analysis of arsenic by selective hydride generation-cryotrapping-atomic fluorescence spectrometry with flame-in-gas-shield atomizer: achieving extremely low detection limits with inexpensive instrumentation.

    PubMed

    Musil, Stanislav; Matoušek, Tomáš; Currier, Jenna M; Stýblo, Miroslav; Dědina, Jiří

    2014-10-21

    This work describes the method of a selective hydride generation-cryotrapping (HG-CT) coupled to an extremely sensitive but simple in-house assembled and designed atomic fluorescence spectrometry (AFS) instrument for determination of toxicologically important As species. Here, an advanced flame-in-gas-shield atomizer (FIGS) was interfaced to HG-CT and its performance was compared to a standard miniature diffusion flame (MDF) atomizer. A significant improvement both in sensitivity and baseline noise was found that was reflected in improved (4 times) limits of detection (LODs). The yielded LODs with the FIGS atomizer were 0.44, 0.74, 0.15, 0.17 and 0.67 ng L(-1) for arsenite, total inorganic, mono-, dimethylated As and trimethylarsine oxide, respectively. Moreover, the sensitivities with FIGS and MDF were equal for all As species, allowing for the possibility of single species standardization with arsenate standard for accurate quantification of all other As species. The accuracy of HG-CT-AFS with FIGS was verified by speciation analysis in two samples of bottled drinking water and certified reference materials, NRC CASS-5 (nearshore seawater) and SLRS-5 (river water) that contain traces of methylated As species. As speciation was in agreement with results previously reported and sums of all quantified species corresponded with the certified total As. The feasibility of HG-CT-AFS with FIGS was also demonstrated by the speciation analysis in microsamples of exfoliated bladder epithelial cells isolated from human urine. The results for the sums of trivalent and pentavalent As species corresponded well with the reference results obtained by HG-CT-ICPMS (inductively coupled plasma mass spectrometry). PMID:25300934

  13. Minimal effects of latitude on present-day speciation rates in New World birds.

    PubMed

    Rabosky, Daniel L; Title, Pascal O; Huang, Huateng

    2015-06-22

    The tropics contain far greater numbers of species than temperate regions, suggesting that rates of species formation might differ systematically between tropical and non-tropical areas. We tested this hypothesis by reconstructing the history of speciation in New World (NW) land birds using BAMM, a Bayesian framework for modelling complex evolutionary dynamics on phylogenetic trees. We estimated marginal distributions of present-day speciation rates for each of 2571 species of birds. The present-day rate of speciation varies approximately 30-fold across NW birds, but there is no difference in the rate distributions for tropical and temperate taxa. Using macroevolutionary cohort analysis, we demonstrate that clades with high tropical membership do not produce species more rapidly than temperate clades. For nearly any value of present-day speciation rate, there are far more species in the tropics than the temperate zone. Any effects of latitude on speciation rate are marginal in comparison to the dramatic variation in rates among clades. PMID:26019156

  14. SPECIATE 4.2: speciation Database Development Documentation

    EPA Science Inventory

    SPECIATE is the U.S. Environmental Protection Agency's (EPA) repository of volatile organic gas and particulate matter (PM) speciation profiles of air pollution sources. Among the many uses of speciation data, these source profiles are used to: (1) create speciated emissions inve...

  15. Speciation and Long- and Short-term Molecular-level Dynamics of Soil Organic Sulfur Studied by X-ray Absorption Near-Edge Structure Spectroscopy

    SciTech Connect

    D Solomon; J Lehmann; K Knoth de Zarruk; J Dathe; J Kinyangi; B Liang; S Machado

    2011-12-31

    We investigated speciation, oxidative state changes, and long- and short-term molecular-level dynamics of organic S after 365 d of aerobic incubation with and without the addition of sugarcane residue using XANES spectroscopy. Soil samples were collected from the upper 15 cm of undisturbed grasslands since 1880, from undisturbed grasslands since 1931, and from cultivated fields since 1880 in the western United States. We found three distinct groups of organosulfur compounds in these grassland-derived soils: (i) strongly reduced (S{sup 0} to S{sup 1+}) organic S that encompasses thiols, monosulfides, disulfides, polysulfides, and thiophenes; (ii) organic S in intermediate oxidation (S{sup 2+} to S{sup 5+}) states, which include sulfoxides and sulfonates; and (iii) strongly oxidized (S{sup 6+}) organic S, which comprises ester-SO{sub 4}-S. The first two groups represent S directly linked to C and accounted for 80% of the total organic S detected by XANES from the undisturbed soils. Aerobic incubation without the addition of sugarcane residue led to a 21% decline in organanosulfur compounds directly linked to C and to up to an 82% increase inorganic S directly bonded to O. Among the C-bonded S compounds, low-valence thiols, sulfides, thiophenic S, and intermediate-valence sulfoxide S seem to be highly susceptible to microbial attack and may represent the most reactive components of organic S pool in these grassland soils. Sulfonate S exhibited a much lower short-term reactivity. The incorporation of sugarcane residue resulted in an increase in organosulfur compounds directly bonded to C at the early stage of incubation. However, similar to soils incubated without residue addition, the proportion of organic S directly linked to C continued to decline with increasing duration of aerobic incubation, whereas the proportion of organic S directly bonded to O showed a steady rise.

  16. Towards silicon speciation in light petroleum products using gas chromatography coupled to inductively coupled plasma mass spectrometry equipped with a dynamic reaction cell

    NASA Astrophysics Data System (ADS)

    Chainet, Fabien; Lienemann, Charles-Philippe; Ponthus, Jeremie; Pécheyran, Christophe; Castro, Joaudimir; Tessier, Emmanuel; Donard, Olivier François Xavier

    2014-07-01

    Silicon speciation has recently gained interest in the oil and gas industry due to the significant poisoning problems caused by silicon on hydrotreatment catalysts. The poisoning effect clearly depends on the structure of the silicon species which must be determined and quantified. The hyphenation of gas chromatography (GC) coupled to inductively coupled plasma mass spectrometry (ICP-MS) allows a specific detection to determine the retention times of all silicon species. The aim of this work is to determine the retention indices of unknown silicon species to allow their characterization by a multi-technical approach in order to access to their chemical structure. The optimization of the dynamic reaction cell (DRC) of the ICP-MS using hydrogen as reactant gas successfully demonstrated the resolution of the interferences (14N14N+ and 12C16O+) initially present on 28Si. The linearity was excellent for silicon compounds and instrumental detection limits ranged from 20 to 140 μg of Si/kg depending on the response of the silicon compounds. A continuous release of silicon in the torch was observed most likely due to the use of a torch and an injector which was made of quartz. A non-universal response for silicon was observed and it was clearly necessary to use response coefficients to quantify silicon compounds. Known silicon compounds such as cyclic siloxanes (D3-D16) coming from PDMS degradation were confirmed. Furthermore, more than 10 new silicon species never characterized before in petroleum products were highlighted in polydimethylsiloxane (PDMS) degradation samples produced under thermal cracking of hydrocarbons. These silicon species mainly consisted of linear and cyclic structures containing reactive functions such as ethoxy, peroxide and hydroxy groups which can be able to react with the alumina surface and hence, poison the catalyst. This characterization will further allow the development of innovative solutions such as trapping silicon compounds or

  17. Dynamical analysis of anisotropic inflation

    NASA Astrophysics Data System (ADS)

    Karčiauskas, Mindaugas

    2016-06-01

    The inflaton coupling to a vector field via the f(φ)2F μνFμν term is used in several contexts in the literature, such as to generate primordial magnetic fields, to produce statistically anisotropic curvature perturbation, to support anisotropic inflation, and to circumvent the η-problem. In this work, I perform dynamical analysis of this system allowing for the most general Bianchi I initial conditions. I also confirm the stability of attractor fixed points along phase-space directions that had not been investigated before.

  18. Nonlinear analysis of pupillary dynamics.

    PubMed

    Onorati, Francesco; Mainardi, Luca Tommaso; Sirca, Fabiola; Russo, Vincenzo; Barbieri, Riccardo

    2016-02-01

    Pupil size reflects autonomic response to different environmental and behavioral stimuli, and its dynamics have been linked to other autonomic correlates such as cardiac and respiratory rhythms. The aim of this study is to assess the nonlinear characteristics of pupil size of 25 normal subjects who participated in a psychophysiological experimental protocol with four experimental conditions, namely “baseline”, “anger”, “joy”, and “sadness”. Nonlinear measures, such as sample entropy, correlation dimension, and largest Lyapunov exponent, were computed on reconstructed signals of spontaneous fluctuations of pupil dilation. Nonparametric statistical tests were performed on surrogate data to verify that the nonlinear measures are an intrinsic characteristic of the signals. We then developed and applied a piecewise linear regression model to detrended fluctuation analysis (DFA). Two joinpoints and three scaling intervals were identified: slope α0, at slow time scales, represents a persistent nonstationary long-range correlation, whereas α1 and α2, at middle and fast time scales, respectively, represent long-range power-law correlations, similarly to DFA applied to heart rate variability signals. Of the computed complexity measures, α0 showed statistically significant differences among experimental conditions (p<0.001). Our results suggest that (a) pupil size at constant light condition is characterized by nonlinear dynamics, (b) three well-defined and distinct long-memory processes exist at different time scales, and (c) autonomic stimulation is partially reflected in nonlinear dynamics. PMID:26351899

  19. Quantitative Zn speciation in a contaminated dredged sediment by μ-PIXE, μ-SXRF, EXAFS spectroscopy and principal component analysis

    NASA Astrophysics Data System (ADS)

    Isaure, Marie-Pierre; Laboudigue, Agnès; Manceau, Alain; Sarret, Géraldine; Tiffreau, Christophe; Trocellier, Patrick; Lamble, Géraldine; Hazemann, Jean-Louis; Chateigner, Daniel

    2002-05-01

    Dredging and disposal of sediments onto agricultural soils is a common practice in industrial and urban areas that can be hazardous to the environment when the sediments contain heavy metals. This chemical hazard can be assessed by evaluating the mobility and speciation of metals after sediment deposition. In this study, the speciation of Zn in the coarse (500 to 2000 μm) and fine (<2 μm) fractions of a contaminated sediment dredged from a ship canal in northern France and deposited on an agricultural soil was determined by physical analytical techniques on raw and chemically treated samples. Zn partitioning between coexisting mineral phases and its chemical associations were first determined by micro-particle-induced X-ray emission and micro-synchrotron-based X-ray radiation fluorescence. Zn-containing mineral species were then identified by X-ray diffraction and powder and polarized extended X-ray absorption fine structure spectroscopy (EXAFS). The number, nature, and proportion of Zn species were obtained by a coupled principal component analysis (PCA) and least squares fitting (LSF) procedure, applied herein for the first time to qualitatively (number and nature of species) and quantitatively (relative proportion of species) speciate a metal in a natural system. The coarse fraction consists of slag grains originating from nearby Zn smelters. In this fraction, Zn is primarily present as sphalerite (ZnS) and to a lesser extent as willemite (Zn 2SiO 4), Zn-containing ferric (oxyhydr)oxides, and zincite (ZnO). In the fine fraction, ZnS and Zn-containing Fe (oxyhydr)oxides are the major forms, and Zn-containing phyllosilicate is the minor species. Weathering of ZnS, Zn 2SiO 4, and ZnO under oxidizing conditions after the sediment disposal accounts for the uptake of Zn by Fe (oxyhydr)oxides and phyllosilicates. Two geochemical processes can explain the retention of Zn by secondary minerals: uptake on preexisting minerals and precipitation with dissolved Fe and Si

  20. Dualism and conflicts in understanding speciation.

    PubMed

    Schilthuizen, M

    2000-12-01

    Speciation is a central but elusive issue in evolutionary biology. Over the past sixty years, the subject has been studied within a framework conceived by Ernst Mayr and Theodosius Dobzhansky and subsequently developed further by numerous other workers. In this "isolation" theory, the evolution of reproductive isolation is a key element of speciation; natural selection is given only secondary importance while gene flow is considered prohibitive to the process. In this paper, I argue that certain elements in this approach have produced confusion and irreconcilability among students of speciation. The more prominent debates in speciation (i.e., the species definition, sympatry/allopatry, and the role of reinforcement) all derive from an inherent conflict between the "isolation" theory and Darwin's "selection" view on species and speciation (in which disruptive selection is crucial). New data, mainly from field ecology, molecular population genetics, laboratory studies with Drosophila and computer analysis, all suggest that the isolation theory may no longer be the most desirable vantage point from which to explore speciation. Instead, environmental selection in large populations, often unimpeded by ongoing gene flow, appears to be the decisive element. The traditional preoccupation with reproductive isolation has created gaps in our knowledge of several crucial issues, mainly regarding the role of environmental selection and its connection with mate selection. PMID:11084629

  1. SPECIATE 4.3: Addendum to SPECIATE 4.2--Speciation database development documentation

    EPA Science Inventory

    SPECIATE is the U.S. Environmental Protection Agency's (EPA) repository of volatile organic gas and particulate matter (PM) speciation profiles of air pollution sources. Among the many uses of speciation data, these source profiles are used to: (1) create speciated emissions inve...

  2. Non-chromatographic screening procedure for arsenic speciation analysis in fish-based baby foods by using electrothermal atomic absorption spectrometry.

    PubMed

    López-García, Ignacio; Briceño, Marisol; Hernández-Córdoba, Manuel

    2011-08-01

    A procedure for the speciation analysis of arsenic in fish-based baby foods is presented. Inorganic arsenic, methylarsonic acid (MA), dimethylarsinic acid (DMA) and arsenobetaine (AB) were determined by electrothermal atomic absorption spectrometry (ETAAS) using suspensions prepared in a 0.01 mol L(-1) tetramethylammonium hydroxide (TMAH) solution. Speciation is based on the use of three different chemically modified ETAAS atomizers to obtain the analytical signals. Using a palladium salt as the chemical modifier, the signal corresponding to the total arsenic concentration is obtained. When palladium is replaced by Ce(IV), the signal is solely due to inorganic arsenic (III and V)+MA. If no signal is obtained in this latter case, it is possible to distinguish between DMA and AB using a zirconium coated atomizer. The signal obtained in this way is due solely to DMA, and the concentration of AB can be obtained by the difference with the total arsenic content. Determinations by ETAAS require the use of the standard additions method. The limits of detection for the determination of AB, DMA and inorganic arsenic (+MA) are 15, 25 and 50 ng g(-1) expressed as arsenic, respectively. These detection limits are good enough for the procedure to be appropriate for the rapid determination of these compounds, avoiding extraction processes and/or chromatographic separations. Data for commercial samples, as well as for four standard reference materials, are given. PMID:21704752

  3. Geochemical speciation and dynamic of copper in tropical semi-arid soils exposed to metal-bearing mine wastes.

    PubMed

    Perlatti, Fabio; Otero, Xosé Luis; Macias, Felipe; Ferreira, Tiago Osório

    2014-12-01

    The potentially hazardous effects of rock wastes disposed at open pit in three different areas (Pr: Ore processing; Wr: Waste rock and Bd: Border) of an abandoned copper mine were evaluated in this study, with emphasis on acid drainage generation, metal contamination and copper geochemical dynamics in soils. Samples of waste rock were analyzed by Energy dispersive X-ray fluorescence (XRF), scanning electron microscopy with microanalysis (SEM-EDS) and X-ray diffraction (XRD). Soil samples were analyzed to determine the total metal contents (XRF), mineralogy (XRD), pH (H2O and H2O2), organic and inorganic carbon, % of total N, S and P, particle size, and a sequential extraction procedure was used to identify the different copper fractions. As a result of the prevalence of carbonates over sulphides in the wastes, the soil pH remained close to neutral, with absence of acid mine drainage. The geochemical interaction between these mineral phases seems to be the main mechanism to release Cu(2)(+) ions. Total Cu in soils from the Pr area reached 11,180mg.kg(-1), while in Wr and Bd areas the values reached, on average, 4683 and 1086mg.kg(-1), respectively, indicating a very high level of soil contamination. In the Pr and Wr, the Cu was mainly associated with carbonates and amorphous iron oxides. In the Bd areas, the presence of vegetation has influenced the geochemical behavior of copper by increasing the dissolution of carbonates, affecting the buffer capacity of soils against sulphide oxidation, reducing the pH levels and enhancing the proportion of exchangeable and organic bound Cu. The present findings show that the use of plants or organic amendments in mine sites with high concentration of Cu carbonate-containing wastes should be viewed with caution, as the practice may enhance the mobilization of copper to the environment due to an increase in the rate of carbonates dissolution. PMID:25217748

  4. Speciation and Structural Properties of Hydrothermal Solutions of Sodium and Potassium Sulfate Studied by Molecular Dynamics Simulations.

    PubMed

    Reimer, Joachim; Vogel, Frédéric; Steele-MacInnis, Matthew

    2016-05-18

    Aqueous solutions of salts at elevated pressures and temperatures play a key role in geochemical processes and in applications of supercritical water in waste and biomass treatment, for which salt management is crucial for performance. A major question in predicting salt behavior in such processes is how different salts affect the phase equilibria. Herein, molecular dynamics (MD) simulations are used to investigate molecular-scale structures of solutions of sodium and/or potassium sulfate, which show contrasting macroscopic behavior. Solutions of Na-SO4 exhibit a tendency towards forming large ionic clusters with increasing temperature, whereas solutions of K-SO4 show significantly less clustering under equivalent conditions. In mixed systems (Nax K2-x SO4 ), cluster formation is dramatically reduced with decreasing Na/(K+Na) ratio; this indicates a structure-breaking role of K. MD results allow these phenomena to be related to the characteristics of electrostatic interactions between K(+) and SO4 (2-) , compared with the analogous Na(+) -SO4 (2-) interactions. The results suggest a mechanism underlying the experimentally observed increasing solubility in ternary mixtures of solutions of Na-K-SO4 . Specifically, the propensity of sodium to associate with sulfate, versus that of potassium to break up the sodium-sulfate clusters, may affect the contrasting behavior of these salts. Thus, mutual salting-in in ternary hydrothermal solutions of Na-K-SO4 reflects the opposing, but complementary, natures of Na-SO4 versus K-SO4 interactions. The results also provide clues towards the reported liquid immiscibility in this ternary system. PMID:26888426

  5. What Is Speciation?

    PubMed

    Shapiro, B Jesse; Leducq, Jean-Baptiste; Mallet, James

    2016-03-01

    Concepts and definitions of species have been debated by generations of biologists and remain controversial. Microbes pose a particular challenge because of their genetic diversity, asexual reproduction, and often promiscuous horizontal gene transfer (HGT). However, microbes also present an opportunity to study and understand speciation because of their rapid evolution, both in nature and in the lab, and small, easily sequenced genomes. Here, we review how microbial population genomics has enabled us to catch speciation "in the act" and how the results have challenged and enriched our concepts of species, with implications for all domains of life. We describe how recombination (including HGT and introgression) has shaped the genomes of nascent microbial, animal, and plant species and argue for a prominent role of natural selection in initiating and maintaining speciation. We ask how universal is the process of speciation across the tree of life, and what lessons can be drawn from microbes? Comparative genomics showing the extent of HGT in natural populations certainly jeopardizes the relevance of vertical descent (i.e., the species tree) in speciation. Nevertheless, we conclude that species do indeed exist as clusters of genetic and ecological similarity and that speciation is driven primarily by natural selection, regardless of the balance between horizontal and vertical descent. PMID:27030977

  6. What Is Speciation?

    PubMed Central

    Shapiro, B. Jesse; Leducq, Jean-Baptiste; Mallet, James

    2016-01-01

    Concepts and definitions of species have been debated by generations of biologists and remain controversial. Microbes pose a particular challenge because of their genetic diversity, asexual reproduction, and often promiscuous horizontal gene transfer (HGT). However, microbes also present an opportunity to study and understand speciation because of their rapid evolution, both in nature and in the lab, and small, easily sequenced genomes. Here, we review how microbial population genomics has enabled us to catch speciation “in the act” and how the results have challenged and enriched our concepts of species, with implications for all domains of life. We describe how recombination (including HGT and introgression) has shaped the genomes of nascent microbial, animal, and plant species and argue for a prominent role of natural selection in initiating and maintaining speciation. We ask how universal is the process of speciation across the tree of life, and what lessons can be drawn from microbes? Comparative genomics showing the extent of HGT in natural populations certainly jeopardizes the relevance of vertical descent (i.e., the species tree) in speciation. Nevertheless, we conclude that species do indeed exist as clusters of genetic and ecological similarity and that speciation is driven primarily by natural selection, regardless of the balance between horizontal and vertical descent. PMID:27030977

  7. [Analysis of washing efficiency and change in lead speciation in lead-contaminated soil of a battery factory].

    PubMed

    Ren, Bei; Huang, Jin-lou; Miao, Ming-sheng

    2013-09-01

    Lead-contaminated soil with different pollution load in a lead battery factory in the southwest of China was chosen as the research object, the lead content and speciation were analyzed, and different washing agents were screened. The lead washing efficiency and lead speciation were analyzed under different pH conditions, and the soil of different particle size was washed using different duration to determine the best washing time. The results showed that the soil of sites A and B in the factory was severely contaminated, the lead concentration reaching 15,703.22 mg x kg(-1) and 1747.78 mg x kg(-1), respectively, and the proportion of the active-state lead was relatively high, while the residue state accounted for only 17.32%, 11.64%, 14.6% and 10.2%. EDTA and hydrochloric acid showed the best extraction effect in the 5 washing agents tested, which included EDTA, hydrochloric acid, citric acid, rhamnolipid and SDS. Cleaning under acidic conditions could not only effectively extract the total amount of lead but also effectively reduce the environmental risk of active-state lead. pH 4-7 was suggested as the most appropriate condition. The cleaning effect of coarse sand and fine sand was good, while for washing powder clay, it is better to improve the process, with the optimal washing time determined as 240 min. PMID:24289026

  8. Do selenium hyperaccumulators affect selenium speciation in neighboring plants and soil? An X-Ray Microprobe Analysis.

    PubMed

    El Mehdawi, Ali F; Lindblom, Stormy D; Cappa, Jennifer J; Fakra, Sirine C; Pilon-Smits, Elizabeth A H

    2015-01-01

    Neighbors of Se hyperaccumulators Stanleya pinnata and Astragalus bisulcatus were found earlier to have elevated Se levels. Here we investigate whether Se hyperaccumulators affect Se localization and speciation in surrounding soil and neighboring plants. X-ray fluorescence mapping and X-ray absorption near-edge structure spectroscopy were used to analyze Se localization and speciation in leaves of Artemisia ludoviciana, Symphyotrichum ericoides and Chenopodium album growing next to Se hyperaccumulators or non-accumulators at a seleniferous site. Regardless of neighbors, A. ludoviciana, S. ericoides and C. album accumulated predominantly (73-92%) reduced selenocompounds with XANES spectra similar to the C-Se-C compounds selenomethionine and methyl-selenocysteine. Preliminary data indicate that the largest Se fraction (65-75%), both in soil next to hyperaccumulator S. pinnata and next to nonaccumulator species was reduced Se with spectra similar to C-Se-C standards. These same C-Se-C forms are found in hyperaccumulators. Thus, hyperaccumulator litter may be a source of organic soil Se, but soil microorganisms may also contribute. These findings are relevant for phytoremediation and biofortification since organic Se is more readily accumulated by plants, and more effective for dietary Se supplementation. PMID:26030363

  9. Monte Carlo simulations of parapatric speciation

    NASA Astrophysics Data System (ADS)

    Schwämmle, V.; Sousa, A. O.; de Oliveira, S. M.

    2006-06-01

    Parapatric speciation is studied using an individual-based model with sexual reproduction. We combine the theory of mutation accumulation for biological ageing with an environmental selection pressure that varies according to the individuals geographical positions and phenotypic traits. Fluctuations and genetic diversity of large populations are crucial ingredients to model the features of evolutionary branching and are intrinsic properties of the model. Its implementation on a spatial lattice gives interesting insights into the population dynamics of speciation on a geographical landscape and the disruptive selection that leads to the divergence of phenotypes. Our results suggest that assortative mating is not an obligatory ingredient to obtain speciation in large populations at low gene flow.

  10. Dynamical analysis of highly excited molecular spectra

    SciTech Connect

    Kellman, M.E.

    1993-12-01

    The goal of this program is new methods for analysis of spectra and dynamics of highly excited vibrational states of molecules. In these systems, strong mode coupling and anharmonicity give rise to complicated classical dynamics, and make the simple normal modes analysis unsatisfactory. New methods of spectral analysis, pattern recognition, and assignment are sought using techniques of nonlinear dynamics including bifurcation theory, phase space classification, and quantization of phase space structures. The emphasis is chaotic systems and systems with many degrees of freedom.

  11. Methods of analysis by the U.S. Geological Survey National Water Quality Laboratory; arsenic speciation in natural-water samples using laboratory and field methods

    USGS Publications Warehouse

    Garbarino, John R.; Bednar, Anthony J.; Burkhardt, Mark R.

    2002-01-01

    Analytical methods for the determination of arsenite [As(III)], arsenate [As(V)], dimethylarsinate (DMA), monomethylarsonate (MMA), and roxarsone in filtered natural-water samples are described. Various analytical methods can be used for the determination, depending on the arsenic species being determined. Arsenic concentration is determined by using inductively coupled plasma-mass spectrometry (ICP-MS) as an arsenic-specific detector for all methods. Laboratory-speciation methods are described that use an ion chromatographic column to separate the arsenic species; the column length, column packing, and mobile phase are dependent on the species of interest. Regardless of the separation technique, the arsenic species are introduced into plasma by eithe rpneumatic nebulization or arsine generation. Analysis times range from 2 to 8 minutes and method detection limits range from 0.1 to 0.6 microgram-arsenic per liter (ug-As/L), 10 to 60 picograms absolute (for a 100-microliter injection), depending on the arsenic species determined and the analytical method used. A field-generation specciation method also is described that uses a strong anion exchange cartridge to separate As(III) from As(V) in the field. As(III) in the eluate and the As(V) in the cartridge extract are determined by direct nebulization ICP-MS. Methylated arsenic species that also are retained on the cartridge will positively bias As(V) results without further laboratory separations. The method detection limit for field speciation is 0.3 ug-As/L. The distribution of arsenic species must be preserved in the field to eliminate changes caused by photochemical oxidation or metal oxyhydroxide precipitation. Preservation techniques, such as refrigeration, the addition of acides, or the additoin of ethylene-diaminetetraacetic acid (EDTA) and the effects of ambient light were tested. Of the preservatives evaluated, EDTA was found to work best with the laboratory- and field-speciation methods for all sample

  12. Ultra-Sensitive Elemental Analysis Using Plasmas 5.Speciation of Arsenic Compounds in Biological Samples by High Performance Liquid Chromatography-Inductively Coupled Plasma Mass Spectrometry System

    NASA Astrophysics Data System (ADS)

    Kaise, Toshikazu

    Arsenic originating from the lithosphere is widely distributed in the environment. Many arsenicals in the environment are in organic and methylated species. These arsenic compounds in drinking water or food products of marine origin are absorbed in human digestive tracts, metabolized in the human body, and excreted viatheurine. Because arsenic shows varying biological a spects depending on its chemical species, the biological characteristics of arsenic must be determined. It is thought that some metabolic pathways for arsenic and some arsenic circulation exist in aqueous ecosystems. In this paper, the current status of the speciation analysis of arsenic by HPLC/ICP-MS (High Performance Liquid Chromatography-Inductively Coupled Plasma Mass spectrometry) in environmental and biological samples is summarized using recent data.

  13. In situ redox speciation analysis of chromium in water by diffusive gradients in thin films using a DE81 anion exchange membrane.

    PubMed

    Suárez, Carlos A; de Simone, Thays V; Menegário, Amauri A; Rolisola, Ana M C M; Luko, Karen S; Gastmans, Didier; da Conceição, Fabiano T; Kiang, Chang H

    2016-07-01

    A method for the in situ redox speciation analysis of chromium in water by the diffusive gradients in thin films (DGT) technique using a DE81 anion exchange membrane was successfully developed. For the selective uptake of Cr(VI), a DGT device containing an anion exchange membrane DE81 (cellulose acetate chromatographic paper) was used (DE81-DGT), while selective uptake of Cr(III) was carried out using DGT devices containing the Chelex-100 resin (Chelex-100-DGT). A correlation coefficient of 0.993 was obtained for the linearity of the immersion curves (mass versus time) using DE81-DGT. The diffusion coefficient values for Cr(VI) through the agarose diffusive layer were equal to 4.89±0.5×10(-6)cm(2)s(-1) and 3.95±0.02×10(-6)cm(2)s(-1) (T=23±1°C, I=0.03molL(-1) NaNO3) were obtained by using diffusion cell and immersion curves, respectively. The retention of Cr(VI) by the DE81 membrane in a synthetic sample and river water was not affected by the pH over a wide range 4-9). Recoveries of Cr(VI) between 90% and 120% from solutions of ionic strength ranging from 0.01 to 0. 5molL(-1) NaNO3 were achieved. Finally, the redox speciation analysis of Cr(III) and Cr(VI) in spiked river water and synthetic samples was performed with recoveries greater than 80% and 87% by using Chelex-100-DGT and DE81-DGT devices, respectively. Those results were in excellent agreement with the diphenylcarbazide spectrophotometric method. PMID:27154678

  14. Dynamic Hurricane Data Analysis Tool

    NASA Technical Reports Server (NTRS)

    Knosp, Brian W.; Li, Peggy; Vu, Quoc A.

    2009-01-01

    A dynamic hurricane data analysis tool allows users of the JPL Tropical Cyclone Information System (TCIS) to analyze data over a Web medium. The TCIS software is described in the previous article, Tropical Cyclone Information System (TCIS) (NPO-45748). This tool interfaces with the TCIS database to pull in data from several different atmospheric and oceanic data sets, both observed by instruments. Users can use this information to generate histograms, maps, and profile plots for specific storms. The tool also displays statistical values for the user-selected parameter for the mean, standard deviation, median, minimum, and maximum values. There is little wait time, allowing for fast data plots over date and spatial ranges. Users may also zoom-in for a closer look at a particular spatial range. This is version 1 of the software. Researchers will use the data and tools on the TCIS to understand hurricane processes, improve hurricane forecast models and identify what types of measurements the next generation of instruments will need to collect.

  15. Systems-Dynamic Analysis for Neighborhood Study

    EPA Science Inventory

    Systems-dynamic analysis (or system dynamics (SD)) helps planners identify interrelated impacts of transportation and land-use policies on neighborhood-scale economic outcomes for households and businesses, among other applications. This form of analysis can show benefits and tr...

  16. Complex speciation of humans and chimpanzees.

    PubMed

    Wakeley, John

    2008-03-13

    Genetic data from two or more species provide information about the process of speciation. In their analysis of DNA from humans, chimpanzees, gorillas, orangutans and macaques (HCGOM), Patterson et al. suggest that the apparently short divergence time between humans and chimpanzees on the X chromosome is explained by a massive interspecific hybridization event in the ancestry of these two species. However, Patterson et al. do not statistically test their own null model of simple speciation before concluding that speciation was complex, and--even if the null model could be rejected--they do not consider other explanations of a short divergence time on the X chromosome. These include natural selection on the X chromosome in the common ancestor of humans and chimpanzees, changes in the ratio of male-to-female mutation rates over time, and less extreme versions of divergence with gene flow (see ref. 2, for example). I therefore believe that their claim of hybridization is unwarranted. PMID:18337768

  17. Instrumentation for Aerosol and Gas Speciation

    NASA Technical Reports Server (NTRS)

    Coggiola, Michael J.

    1998-01-01

    Using support from NASA Grant No. NAG 2-963, SRI International successfully completed the project, entitled, 'Instrumentation for Aerosol and Gas Speciation.' This effort (SRI Project 7383) covered the design, fabrication, testing, and deployment of a real-time aerosol speciation instrument in NASA's DC-8 aircraft during the Spring 1996 SUbsonic aircraft: Contrail and Cloud Effects Special Study (SUCCESS) mission. This final technical report describes the pertinent details of the instrument design, its abilities, its deployment during SUCCESS and the data acquired from the mission, and the post-mission calibration, data reduction, and analysis.

  18. Selective sorption behavior of iodine species on an activated carbon disk and its implication for the speciation analysis

    NASA Astrophysics Data System (ADS)

    Yoon, H.; Lee, J.; An, J.

    2013-12-01

    In recent times, iodate (IO3-) which can be generated under highly oxidized conditions such as the ozonation process in a water treatment plant has been receiving increasing attention due to its high toxicity to human and environment. In this respect, sorption behavior of iodide (I-) and IO3- on an activated carbon (AC) disk as a solid sorbent was investigated for the further development of efficient removal and analytical techniques. To this end, batch sorption tests were performed as a function of pH, sample volume, and initial concentration. Sorption of I- occurred preferentially on the surface of AC disk, regardless of pH levels (i.e., 4, 6, and 8). However, IO3- was quite sensitive to pH levels and the sorption capability of IO3- on the AC disk was much smaller than that of I-. Maximum sorption capacities of I- and IO3- in the different matrices (i.e., deionized water and seawater) were also assessed. In addition, the analytical strategy for the iodine speciation was also introduced. Iodine species were separated and pre-concentrated onto the AC disk based on their selective sorption properties according to the pH levels. Then, the AC disk pre-concentrated was directly analyzed using wavelength dispersive X-ray fluorescence spectrometry. Acknowledgement This research was supported by a grant from the Korea Basic Science Institute (project No. E33300).

  19. Speciation of antimony in airborne particulate matter using ultrasound probe fast extraction and analysis by HPLC-HG-AFS.

    PubMed

    Bellido-Martín, A; Gómez-Ariza, J L; Smichowsky, P; Sánchez-Rodas, D

    2009-09-01

    A fast extraction procedure has been developed for Sb(III) and Sb(V) oxoanions speciation in airborne particulate matter samples. Different extraction media (diammonium tartrate, hidroxilammonium clorhidrate, citric acid+ascorbic acid, phosphoric acid and citrate solutions) were tried, with assistance of an ultrasonic probe. The operation power and time of extraction were also optimized. The higher extraction recoveries were obtained with a 100 mmol L(-1) hidroxilammonium clorhidrate aqueous solution assisted by the ultrasound probe operated at 50 W during 3 min. The extracts were analyzed by HPLC-HG-AFS. The chromatographic separation of Sb(III) and Sb(V) was also optimized using diammonium tartrate and phthalic acid as mobile phases. The separation of both Sb species was performed in less than 3 min under isocratic conditions, using a 200 mmol L(-1) diammonium tartrate solution. The proposed extraction procedure and the HPLC-HG-AFS instrumental coupling have been successfully applied to airborne particulate matter samples, with high Sb content, collected in heavy traffic streets from Buenos Aires (Argentina). The results showed the presence of both Sb species at similar concentrations in the ng m(-3) level. The extraction yield was higher than 90% for all the analyzed samples. PMID:19699393

  20. Trojan-horse mechanism in the cellular uptake of silver nanoparticles verified by direct intra- and extracellular silver speciation analysis.

    PubMed

    Hsiao, I-Lun; Hsieh, Yi-Kong; Wang, Chu-Fang; Chen, I-Chieh; Huang, Yuh-Jeen

    2015-03-17

    The so-called "Trojan-horse" mechanism, in which nanoparticles are internalized within cells and then release high levels of toxic ions, has been proposed as a behavior in the cellular uptake of Ag nanoparticles (AgNPs). While several reports claim to have proved this mechanism by measuring AgNPs and Ag ions (I) in cells, it cannot be fully proven without examining those two components in both intra- and extracellular media. In our study, we found that even though cells take up AgNPs similarly to (microglia (BV-2)) or more rapidly than (astrocyte (ALT)) Ag (I), the ratio of AgNPs to total Ag (AgNPs+Ag (I)) in both cells was lower than that in outside media. It could be explained that H2O2, a major intracellular reactive oxygen species (ROS), reacts with AgNPs to form more Ag (I). Moreover, the major speciation of Ag (I) in cells was Ag(cysteine) and Ag(cysteine)2, indicating the possible binding of monomer cysteine or vital thiol proteins/peptides to Ag ions. Evidence we found indicates that the Trojan-horse mechanism really exists. PMID:25692749

  1. ORGANIC SPECIATION SAMPLING ARTIFACTS

    EPA Science Inventory

    Sampling artifacts for molecular markers from organic speciation of particulate matter were investigated by analyzing forty-one samples collected in Philadelphia as a part of the Northeast Oxidant and Particulate Study (NEOPS). Samples were collected using a high volume sampler ...

  2. Population differentiation without speciation

    PubMed Central

    Magurran, A. E.

    1998-01-01

    Population differentiation is often viewed as an important step towards speciation, and part of the rationale for conserving variation at the intraspecific level is that the potential to generate more biological diversity should be retained. Yet, speciation is not an inevitable consequence of population divergence. This paper reviews recent work on the Trinidadian guppy, Poecilia reticulata, a species that is renowned for its capacity for population differentiation. Guppy populations evolve rapidly, within 101 to 102 generations, as a response to changes in selection exerted by predators. The rates of evolution involved can be up to seven orders of magnitude greater than those seen in the fossil record. Sexual selection, particuarly female choice, appears to reinforce the divergence that natural selection has generated. Perplexingly, however, there is no reproductive isolation (either prezygotic or postzygotic) between populations, even those that have been separated for at least 106 generations. Sexual conflict may be the key to explaining this absence of speciation. Male reproductive behaviour, particularly the high incidence of sneaky mating, may be instrumental in producing sufficient gene flow to prevent reproductive isolation. Sneaky mating has the potential to undermine female choice, and is known to be an important means of sperm transfer in wild populations. Sexual dimorphism, also a result of sexual conflict in guppies, may inhibit speciation in another way. Morphological differences between the sexes, that have arisen for reproductive reasons, mean that males and females are pre-adapted for different foraging niches. This, in turn, reduces the opportunity for the development of feeding polymorphisms, a mechanism that seems to have been important in the sympatric speciation of other fish species.

  3. Guidelines for dynamic data acquisition and analysis

    NASA Technical Reports Server (NTRS)

    Piersol, Allan G.

    1992-01-01

    The recommendations concerning pyroshock data presented in the final draft of a proposed military handbook on Guidelines for Dynamic Data Acquisition and Analysis are reviewed. The structural responses produced by pyroshocks are considered to be one of the most difficult types of dynamic data to accurately measure and analyze.

  4. Guidelines for dynamic data acquisition and analysis

    NASA Astrophysics Data System (ADS)

    Piersol, Allan G.

    1992-10-01

    The recommendations concerning pyroshock data presented in the final draft of a proposed military handbook on Guidelines for Dynamic Data Acquisition and Analysis are reviewed. The structural responses produced by pyroshocks are considered to be one of the most difficult types of dynamic data to accurately measure and analyze.

  5. Bimolecular dynamics by computer analysis

    SciTech Connect

    Eilbeck, J.C.; Lomdahl, P.S.; Scott, A.C.

    1984-01-01

    As numerical tools (computers and display equipment) become more powerful and the atomic structures of important biological molecules become known, the importance of detailed computation of nonequilibrium biomolecular dynamics increases. In this manuscript we report results from a well developed study of the hydrogen bonded polypeptide crystal acetanilide, a model protein. Directions for future research are suggested. 9 references, 6 figures.

  6. Speciation analysis of arsenic in biological matrices by automated hydride generation-cryotrapping-atomic absorption spectrometry with multiple microflame quartz tube atomizer (multiatomizer).

    EPA Science Inventory

    This paper describes an automated system for the oxidation state specific speciation of inorganic and methylated arsenicals by selective hydride generation - cryotrapping- gas chromatography - atomic absorption spectrometry with the multiatomizer. The corresponding arsines are ge...

  7. Chemical Speciation of Sulfur in Marine Cloud Droplets and Particles: Analysis of Individual Particles from Marine Boundary Layer over the California Current

    SciTech Connect

    William R. Wiley Environmental Sciences Laboratory, Pacific Northwest National Laboratory; Gilles, Mary K; Hopkins, Rebecca J.; Desyaterik, Yury; Tivanski, Alexei V.; Zaveri, Rahul A.; Berkowitz, Carl M.; Tyliszczak, Tolek; Gilles, Mary K.; Laskin, Alexander

    2008-03-12

    Detailed chemical speciation of the dry residue particles from individual cloud droplets and interstitial aerosol collected during the Marine Stratus Experiment (MASE) was performed using a combination of complementary microanalysis techniques. Techniques include computer controlled scanning electron microscopy with energy dispersed analysis of X-rays (CCSEM/EDX), time-of-flight secondary ionization mass spectrometry (TOF-SIMS), and scanning transmission X-ray microscopy with near edge X-ray absorption fine structure spectroscopy (STXM/NEXAFS). Samples were collected at the ground site located in Point Reyes National Seashore, approximately 1 km from the coast. This manuscript focuses on the analysis of individual particles sampled from air masses that originated over the open ocean and then passed through the area of the California current located along the northern California coast. Based on composition, morphology, and chemical bonding information, two externally mixed, distinct classes of sulfur containing particles were identified: chemically modified (aged) sea salt particles and secondary formed sulfate particles. The results indicate substantial heterogeneous replacement of chloride by methanesulfonate (CH3SO3-) and non-sea salt sulfate (nss-SO42-) in sea-salt particles with characteristic ratios of nss-S/Na>0.10 and CH3SO3-/nss-SO42->0.6.

  8. On-line pre-reduction of pentavalent arsenicals by thioglycolic acid for speciation analysis by selective hydride generation cryotrapping atomic absorption spectrometry

    NASA Astrophysics Data System (ADS)

    Musil, Stanislav; Matoušek, Tomáš

    2008-06-01

    An improvement of current method of selective hydride generation based on pre-reduction for differentiation of tri- and pentavalent arsenicals is described, applied for the oxidation state specific speciation analysis of inorganic, mono-, di- and trimethylated arsenicals with minimum sample pretreatment using atomic absorption spectrometry with the multiatomizer. The preconcentration and separation of arsine, methylarsine, dimethylarsine and trimethylarsine are then carried out by means of cryotrapping. The presented study shows that 2% (m/v) L-cysteine hydrochloride monohydrate ( L-cys) currently used for off-line pre-reduction of pentavalent arsenicals can be substituted with 1% (m/v) thioglycolic acid (TGA). Much faster pre-reduction of pentavalent arsenicals at 25 °C with equal sensitivities as in the case of L-cys has been achieved with TGA. A setup for on-line pre-reduction by TGA has been optimized, with the application of segmented flow analysis for suppression of axial dispersion in the pre-reduction coil. Standard calibrations measured with or without on-line pre-reduction indicate uniform and equal sensitivities for all As forms. The possibility of standardization by water standards of single species (e.g. iAs(III)) for quantification of all other As forms in urine is demonstrated in the recovery study. Limits of detection were 100 ng l - 1 for iAs(III), 135 ng l - 1 for iAs(V) and 30 to 50 ng l - 1 for methylated arsenicals.

  9. Coupled dynamics analysis of wind energy systems

    NASA Technical Reports Server (NTRS)

    Hoffman, J. A.

    1977-01-01

    A qualitative description of all key elements of a complete wind energy system computer analysis code is presented. The analysis system addresses the coupled dynamics characteristics of wind energy systems, including the interactions of the rotor, tower, nacelle, power train, control system, and electrical network. The coupled dynamics are analyzed in both the frequency and time domain to provide the basic motions and loads data required for design, performance verification and operations analysis activities. Elements of the coupled analysis code were used to design and analyze candidate rotor articulation concepts. Fundamental results and conclusions derived from these studies are presented.

  10. Analysis of dynamic multiplicity fluctuations at PHOBOS

    NASA Astrophysics Data System (ADS)

    Chai, Zhengwei; PHOBOS Collaboration; Back, B. B.; Baker, M. D.; Ballintijn, M.; Barton, D. S.; Betts, R. R.; Bickley, A. A.; Bindel, R.; Budzanowski, A.; Busza, W.; Carroll, A.; Chai, Z.; Decowski, M. P.; García, E.; George, N.; Gulbrandsen, K.; Gushue, S.; Halliwell, C.; Hamblen, J.; Heintzelman, G. A.; Henderson, C.; Hofman, D. J.; Hollis, R. S.; Holynski, R.; Holzman, B.; Iordanova, A.; Johnson, E.; Kane, J. L.; Katzy, J.; Khan, N.; Kucewicz, W.; Kulinich, P.; Kuo, C. M.; Lin, W. T.; Manly, S.; McLeod, D.; Mignerey, A. C.; Nouicer, R.; Olszewski, A.; Pak, R.; Park, I. C.; Pernegger, H.; Reed, C.; Remsberg, L. P.; Reuter, M.; Roland, C.; Roland, G.; Rosenberg, L.; Sagerer, J.; Sarin, P.; Sawicki, P.; Skulski, W.; Steinberg, P.; Stephans, G. S. F.; Sukhanov, A.; Tang, J. L.; Trzupek, A.; Vale, C.; van Nieuwenhuizen, G. J.; Verdier, R.; Wolfs, F. L. H.; Wosiek, B.; Wozniak, K.; Wuosmaa, A. H.; Wyslouch, B.

    2005-01-01

    This paper presents the analysis of the dynamic fluctuations in the inclusive charged particle multiplicity measured by PHOBOS for Au+Au collisions at surdsNN = 200GeV within the pseudo-rapidity range of -3 < η < 3. First the definition of the fluctuations observables used in this analysis is presented, together with the discussion of their physics meaning. Then the procedure for the extraction of dynamic fluctuations is described. Some preliminary results are included to illustrate the correlation features of the fluctuation observable. New dynamic fluctuations results will be available in a later publication.

  11. Detrended fluctuation analysis of heart intrabeat dynamics

    NASA Astrophysics Data System (ADS)

    Rodriguez, Eduardo; Echeverria, Juan C.; Alvarez-Ramirez, Jose

    2007-10-01

    We investigate scaling properties of electrocardiogram (ECG) recordings of healthy subjects and heart failure patients based on detrended fluctuation analysis (DFA). While the vast majority of scaling analysis has focused on the characterization of the long-range correlations of interbeat (i.e., beat-to-beat) dynamics, in this work we consider instead the characterization of intrabeat dynamics. That is, here we use DFA to study correlations for time scales smaller than one heart beat period (about 0.75 s). Our results show that intrabeat dynamics of healthy subject are less correlated than for heart failure dynamics. As in the case of interbeat dynamics, the DFA scaling exponents can be used to discriminate healthy and pathological data. It is shown that 0.5 h recordings suffices to characterize the ECG correlation properties.

  12. Session 6: Dynamic Modeling and Systems Analysis

    NASA Technical Reports Server (NTRS)

    Csank, Jeffrey; Chapman, Jeffryes; May, Ryan

    2013-01-01

    These presentations cover some of the ongoing work in dynamic modeling and dynamic systems analysis. The first presentation discusses dynamic systems analysis and how to integrate dynamic performance information into the systems analysis. The ability to evaluate the dynamic performance of an engine design may allow tradeoffs between the dynamic performance and operability of a design resulting in a more efficient engine design. The second presentation discusses the Toolbox for Modeling and Analysis of Thermodynamic Systems (T-MATS). T-MATS is a Simulation system with a library containing the basic building blocks that can be used to create dynamic Thermodynamic Systems. Some of the key features include Turbo machinery components, such as turbines, compressors, etc., and basic control system blocks. T-MAT is written in the Matlab-Simulink environment and is open source software. The third presentation focuses on getting additional performance from the engine by allowing the limit regulators only to be active when a limit is danger of being violated. Typical aircraft engine control architecture is based on MINMAX scheme, which is designed to keep engine operating within prescribed mechanical/operational safety limits. Using a conditionally active min-max limit regulator scheme, additional performance can be gained by disabling non-relevant limit regulators

  13. Obtaining railpad properties via dynamic mechanical analysis

    NASA Astrophysics Data System (ADS)

    Oregui, M.; de Man, A.; Woldekidan, M. F.; Li, Z.; Dollevoet, R.

    2016-02-01

    In this paper, we propose combining dynamic mechanical analysis (DMA) and the time-temperature superposition principle to determine various railpad dynamic properties. Having accurate information regarding the dynamic properties of a railpad is a fundamental requirement for designing tracks and understanding track deterioration. By testing three different railpad types, we demonstrate that the dynamic behavior of railpads over a wide frequency range can be successfully obtained under different preloads and temperatures if time-temperature superposition can be applied. To investigate railpad aging, worn railpads taken from a mainline in the Netherlands are tested. In this case, worn railpads are softer and possess a lower damping capacity than new railpads. In addition to performing these measurements, a Prony series material model is proposed to reproduce the dynamic behavior of railpads. The Prony series model is in good agreement with the measurements. Measured railpad dynamic properties and the corresponding Prony series numerical model provide valuable information for track design and modeling.

  14. A novel strategy for Cr(III) and Cr(VI) analysis in dietary supplements by speciated isotope dilution mass spectrometry.

    PubMed

    Unceta, Nora; Astorkia, Maider; Abrego, Zuriñe; Gómez-Caballero, Alberto; Goicolea, M Aránzazu; Barrio, Ramón J

    2016-07-01

    In recent years, Cr speciation in dietary supplements has become decisive in the evaluation of their health risks. Despite being an beneficial micronutrient, Cr(III) can be toxic at living organisms at high concentrations, while Cr(VI) is known to be highly toxic and carcinogenic. The main objective of this work was to optimize an analytical methodology for the extraction and accurate quantification of Cr(III) and Cr(VI) in dietary supplements. The extraction of Cr species was carried out with 50mM EDTA solution on a hotplate under optimized conditions. Special attention was paid to bidirectional species transformations. No noticeable oxidation of Cr(III) into Cr(VI) was observed and the reduction to Cr(III) only occurred at very high Cr(VI) concentrations. Cr(III) as Cr(EDTA)(-) complex was chromatographically separated from Cr(VI), retained as CrO4(2-), on an anion exchange column coupled to inductively coupled plasma mass spectrometry (LC-ICP-MS). The limit of quantification (0.08µgg(-1)) was below the limit established for Cr enriched yeasts by the European Union. Eleven dietary supplements were analyzed and Cr(III) and Cr(VI) quantification was carried out by external calibration monitoring (52)Cr isotope and by speciated isotope dilution mass spectrometry (SIDMS) adding (50)Cr(III) and (53)Cr(VI) spikes. Total Cr was also quantified by ICP-MS and mass balance between total Cr and the sum of Cr(III) and Cr(VI) was achieved. In eight of the eleven tested supplements Cr(III) calculated amounts were higher than those indicated by the manufacturer, but only one of them exceeded the 250µgday(-1) recommended by World Health Organization (WHO). In contrast, it is worth noting that Cr(VI) amounts beyond the recommendations of the European Union for Cr enriched yeasts were found in five supplements. These results revealed that more accurate and rigorous quality assurance protocols should be applied to the testing of the final products, including the analysis of both

  15. STEP Tether Dynamics Preliminary Analysis

    NASA Technical Reports Server (NTRS)

    Glaese, John R.

    2000-01-01

    The General Tethered Object Simulation System (GTOSS) has been successfully converted to the PC environment. GTOSS has been run under Microsoft Windows 95, 98 and NT4.0 with no problems noted. Adaptation to the PC environment and definition of the 3 three body configuration required resizing some of the GTOSS internal data arrays. To allow studies of the tether dynamics accompanying electrodynamic thrust, a tether current flow model has also been developed for GTOSS. This model includes effects due to the earth's magnetic field and ionosphere, tether conductivity, temperature, motion, shape and available power. Sample cases have been defined for a proposed STEP-AIRSEDS (Space Transfer using Electrodynamic Propulsion-The Michigan Technic Corporation proposed tether missions for commercial applications) three body configuration. This required definition of a 6th power scenario for GTOSS. This power scenario allows a user to specify whether orbit raising or orbit lowering is to be performed by selecting the number of the tether. Orbit raising and orbit lowering sample cases have been run successfully. Results from these runs have been included in this report. Results have only been generated so far for a three body configuration. Only point end masses have been represented. No attitude dynamics have been included. Initial results suggest that tether current can have significant and detrimental effects on tether dynamics and provisions will have to be made for control of it. This control will have to be considered in connection with desired target orbits for electrodynamic thrusting, as well as end body attitude control, momentum management of proposed control moment gyros, solar array pointing. All of these items will interact and thus, any system simulation will have to have each of these effects modeled in sufficient detail to display these interactions.

  16. NERVA dynamic analysis methodology, SPRVIB

    NASA Technical Reports Server (NTRS)

    Vronay, D. F.

    1972-01-01

    The general dynamic computer code called SPRVIB (Spring Vib) developed in support of the NERVA (nuclear engine for rocket vehicle application) program is described. Using normal mode techniques, the program computes kinematical responses of a structure caused by various combinations of harmonic and elliptic forcing functions or base excitations. Provision is made for a graphical type of force or base excitation input to the structure. A description of the required input format and a listing of the program are presented, along with several examples illustrating the use of the program. SPRVIB is written in FORTRAN 4 computer language for use on the CDC 6600 or the IBM 360/75 computers.

  17. Nonlinear Analysis Of Rotor Dynamics

    NASA Technical Reports Server (NTRS)

    Day, William B.; Zalik, Richard

    1988-01-01

    Study explores analytical consequences of nonlinear Jeffcott equations of rotor dynamics. Section 1: Summary of previous studies. Section 2: Jeffcott Equations. Section 3: Proves two theorems that provide inequalities on coefficients of differential equations and magnitude of forcing function in absence of side force. Section 4: Numerical investigation of multiple-forcing-function problem by introducing both side force and mass imbalance. Section 5: Examples of numberical solutions of complex generalized Jeffcott equation with two forcing functions of different frequencies f1 and f2. Section 6: Boundedness and stability of solutions.Section 7: Concludes report reviewing analytical results and significance.

  18. The evolutionary genetics of speciation.

    PubMed Central

    Coyne, J A; Orr, H A

    1998-01-01

    The last decade has brought renewed interest in the genetics of speciation, yielding a number of new models and empirical results. Defining speciation as 'the origin of reproductive isolation between two taxa', we review recent theoretical studies and relevant data, emphasizing the regular patterns seen among genetic analyses. Finally, we point out some important and tractable questions about speciation that have been neglected. PMID:9533126

  19. Nonlinear Dynamical Analysis of Fibrillation

    NASA Astrophysics Data System (ADS)

    Kerin, John A.; Sporrer, Justin M.; Egolf, David A.

    2013-03-01

    The development of spatiotemporal chaotic behavior in heart tissue, termed fibrillation, is a devastating, life-threatening condition. The chaotic behavior of electrochemical signals, in the form of spiral waves, causes the muscles of the heart to contract in an incoherent manner, hindering the heart's ability to pump blood. We have applied the mathematical tools of nonlinear dynamics to large-scale simulations of a model of fibrillating heart tissue to uncover the dynamical modes driving this chaos. By studying the evolution of Lyapunov vectors and exponents over short times, we have found that the fibrillating tissue is sensitive to electrical perturbations only in narrow regions immediately in front of the leading edges of spiral waves, especially when these waves collide, break apart, or hit the edges of the tissue sample. Using this knowledge, we have applied small stimuli to areas of varying sensitivity. By studying the evolution of the effects of these perturbations, we have made progress toward controlling the electrochemical patterns associated with heart fibrillation. This work was supported by the U.S. National Science Foundation (DMR-0094178) and Research Corporation.

  20. Analysis of Multidomain Protein Dynamics.

    PubMed

    Roy, Amitava; Hua, Duy P; Post, Carol Beth

    2016-01-12

    Proteins with a modular architecture of multiple domains connected by linkers often exhibit diversity in the relative positions of domains, while the domain tertiary structure remains unchanged. The biological function of these modular proteins, or the regulation of their activity, depends on the variation in domain orientation and separation. Accordingly, careful characterization of interdomain motion and correlated fluctuations of multidomain systems is relevant for understanding the functional behavior of modular proteins. Molecular dynamics (MD) simulations provides a powerful approach to study these motions in atomic detail. Nevertheless, the common procedure for analyzing fluctuations from MD simulations after rigid-body alignment fails for multidomain proteins; it greatly overestimates correlated positional fluctuations in the presence of relative domain motion. We show here that expressing the atomic motions of a multidomain protein as a combination of displacement within the domain reference frame and motion of the relative domains correctly separates the internal motions to allow a useful description of correlated fluctuations. We illustrate the methodology of separating the domain fluctuations and local fluctuations by application to the tandem SH2 domains of human Syk protein kinase and by characterizing an effect of phosphorylation on the dynamics. Correlated motions are assessed from a distance covariance rather than the more common vector-coordinate covariance. The approach makes it possible to calculate the proper correlations in fluctuations internal to a domain as well as between domains. PMID:26675644

  1. Mercury speciation analysis in sea water by solid phase microextraction?gas chromatography?inductively coupled plasma mass spectrometry using ethyl and propyl derivatization. Matrix effects evaluation

    NASA Astrophysics Data System (ADS)

    Bravo-Sánchez, Luis R.; Ruiz Encinar, Jorge; Fidalgo Martínez, José I.; Sanz-Medel, Alfredo

    2004-01-01

    An approach to the speciation analysis of mercury in sea-water samples at sub-ppt levels by means of the hyphenation of solid phase microextraction to gas chromatography-inductively coupled plasma mass spectrometry was developed. Blank values turned out to be the limiting factor for lower detection limits of inorganic mercury. Thus, all the reagents were thoroughly cleaned using laboratory made microcolumns packed with 8-hydroxyquinoline on TSK gel. Sodium tetrapropylborate (NaBPr 4) synthesized for the purpose of derivatization of the mercury species resulted in better analytical performances of the method, probably due to lower mercury contamination, than commercial sodium tetraethylborate (NaBEt 4). Detection limits down to a few picogram per liter for both mercury and methylmercury were obtained using NaBPr 4. The high salt content of sea-water samples was responsible for strong matrix effects, which were overcome by using standards additions to the samples. The validation of the methodology was carried out by direct comparison of the results for inorganic mercury with those obtained using a flow injection system followed by preconcentration/trapping of the species and its detection by atomic absorption spectrometry. The proposed method was applied to the determination of mercury and methylmercury in coastal sea-water samples from Gijón (Asturias, Spain) and results obtained are discussed in the light of the butyltin levels previously determined in the same area.

  2. Hard X-Ray Spectro Microprobe Analysis of Inhomogeneous Solids: A Case Study. Element Distribution and Speciation in Selected Iron Meteorite

    SciTech Connect

    Cavell, R.G.; Feng, R.; Barnes, E.M.; Cavell, P.A.; McCready, A.J.; Webb, M.A.

    2007-06-08

    The hard X-ray microprobe provides an effective methodology for the non-destructive analysis of inhomogeneous materials. Application of X-ray absorption/fluroescence spectroscopy techniques (XANES and EXAFS) permits the speciation of the elements and yields information about the local structural environment. Microfocussed, monochromatic, tunable X-rays allows examination of small areas of micrometer dimensions with spectroscopic procedures. Typically the materials which are presented are thick and cannot be altered for the experiment. This condition introduces difficulties which may compromise the results. Herein we discuss those difficulties and show that the system can yield reliable results in spite of the compromises. Some results are presented on the two iron meteorites we have examined. These specimens are representative of highly inhomogeneous materials and illustrate the difficulties encountered with compositional variations which may occur at sub-millimeter dimensions and also illustrate the difficulties presented by the need to analyze components present at ppm concentration levels in a concentrated matrix. In these particular samples the major constituent is Fe which ranges from 90% to 70%, balanced by Ni which ranges from 10% to 30%. The critical diagnostic trace elements Ga and Ge which must also be analyzed are present at the 80 and 340 ppm level respectively. These diagnostic elements have been shown by EXAFS to be substitutionally placed in the matrix of the major element species in these meteorite samples.

  3. Size exclusion chromatography with evaporative light scattering detection as a method for speciation analysis of polydimethylsiloxanes. III. Identification and determination of dimeticone and simeticone in pharmaceutical formulations.

    PubMed

    Mojsiewicz-Pieńkowska, Krystyna

    2012-01-25

    The pharmaceutical industry is one of the more important sectors for the use of polydimethylsiloxanes (PDMS), which belong to the organosilicon polymers. In drugs for internal use, they are used as an active pharmaceutical ingredient (API) called dimeticone or simeticone. Due to their specific chemical nature, PDMS can have different degrees of polymerization, which determine the molecular weight and viscosity. The Pharmacopoeial monographs for dimeticone and simeticone, only give the permitted polymerization and viscosity range. It is, however, essential to know also the degree of polymerization or the specific molecular weight of PDMS that are present in pharmaceutical formulations. In the literature there is information about the impact of particle size, and thus molecular weight, on the toxicity, absorption and migration in living organisms. This study focused on the use of a developed method - the exclusion chromatography with evaporative light scattering detector (SEC-ELSD) - for identification and determination of dimeticone and simeticone in various pharmaceutical formulations. The method had a high degree of specificity and was suitable for speciation analysis of these polymers. So far the developed method has not been used in the control of medicinal products containing dimeticone or simeticone. PMID:21962761

  4. Arsenic Speciation in Groundwater: Role of Thioanions

    EPA Science Inventory

    The behavior of arsenic in groundwater environments is fundamentally linked to its speciation. Understanding arsenic speciation is important because chemical speciation impacts reactivity, bioavailability, toxicity, and transport and fate processes. In aerobic environments arsen...

  5. Visual Analysis of Dynamic Data Streams

    SciTech Connect

    Chin, George; Singhal, Mudita; Nakamura, Grant C.; Gurumoorthi, Vidhya; Freeman-Cadoret, Natalie A.

    2009-09-01

    For scientific data visualizations, real-time data streams present many interesting challenges when compared to static data. Real-time data are dynamic, transient, high-volume, and temporal. Effective visualizations need to be able to accommodate dynamic data behavior as well as abstract and present the data in ways that make sense to and are usable by humans. The Visual Content Analysis of Real-Time Data Streams project at the Pacific Northwest National Laboratory is researching and prototyping dynamic visualization techniques and tools to help facilitate human understanding and comprehension of high-volume, real-time data. The general strategy of the project is to develop and evolve visual contexts that will organize and orient complex dynamic data in conceptual and perceptive views. The goal is to allow users to quickly grasp dynamic data in forms that are intuitive and natural without requiring intensive training in the use of specific visualization or analysis tools and methods. Thus far, the project has prototyped four different visualization prototypes that represents and convey dynamic data through human-recognizable contexts and paradigms such as hierarchies, relationships, time, and geography. We describe the design considerations and unique features of these dynamic visualization prototypes as well as our findings in the exploration and evaluation of their use.

  6. SPECIATE--EPA'S DATABASE OF SPECIATED EMISSION PROFILES

    EPA Science Inventory

    SPECIATE is EPA's repository of Total Organic Compound and Particulate Matter speciated profiles for a wide variety of sources. The profiles in this system are provided for air quality dispersion modeling and as a library for source-receptor and source apportionment type models. ...

  7. Structural Dynamics and Data Analysis

    NASA Technical Reports Server (NTRS)

    Luthman, Briana L.

    2013-01-01

    This project consists of two parts, the first will be the post-flight analysis of data from a Delta IV launch vehicle, and the second will be a Finite Element Analysis of a CubeSat. Shock and vibration data was collected on WGS-5 (Wideband Global SATCOM- 5) which was launched on a Delta IV launch vehicle. Using CAM (CAlculation with Matrices) software, the data is to be plotted into Time History, Shock Response Spectrum, and SPL (Sound Pressure Level) curves. In this format the data is to be reviewed and compared to flight instrumentation data from previous flights of the same launch vehicle. This is done to ensure the current mission environments, such as shock, random vibration, and acoustics, are not out of family with existing flight experience. In family means the peaks on the SRS curve for WGS-5 are similar to the peaks from the previous flights and there are no major outliers. The curves from the data will then be compiled into a useful format so that is can be peer reviewed then presented before an engineering review board if required. Also, the reviewed data will be uploaded to the Engineering Review Board Information System (ERBIS) to archive. The second part of this project is conducting Finite Element Analysis of a CubeSat. In 2010, Merritt Island High School partnered with NASA to design, build and launch a CubeSat. The team is now called StangSat in honor of their mascot, the mustang. Over the past few years, the StangSat team has built a satellite and has now been manifested for flight on a SpaceX Falcon 9 launch in 2014. To prepare for the final launch, a test flight was conducted in Mojave, California. StangSat was launched on a Prospector 18D, a high altitude rocket made by Garvey Spacecraft Corporation, along with their sister satellite CP9 built by California Polytechnic University. However, StangSat was damaged during an off nominal landing and this project will give beneficial insights into what loads the CubeSat experienced during the crash

  8. Dynamic Event Tree Analysis Through RAVEN

    SciTech Connect

    A. Alfonsi; C. Rabiti; D. Mandelli; J. Cogliati; R. A. Kinoshita; A. Naviglio

    2013-09-01

    Conventional Event-Tree (ET) based methodologies are extensively used as tools to perform reliability and safety assessment of complex and critical engineering systems. One of the disadvantages of these methods is that timing/sequencing of events and system dynamics is not explicitly accounted for in the analysis. In order to overcome these limitations several techniques, also know as Dynamic Probabilistic Risk Assessment (D-PRA), have been developed. Monte-Carlo (MC) and Dynamic Event Tree (DET) are two of the most widely used D-PRA methodologies to perform safety assessment of Nuclear Power Plants (NPP). In the past two years, the Idaho National Laboratory (INL) has developed its own tool to perform Dynamic PRA: RAVEN (Reactor Analysis and Virtual control ENvironment). RAVEN has been designed in a high modular and pluggable way in order to enable easy integration of different programming languages (i.e., C++, Python) and coupling with other application including the ones based on the MOOSE framework, developed by INL as well. RAVEN performs two main tasks: 1) control logic driver for the new Thermo-Hydraulic code RELAP-7 and 2) post-processing tool. In the first task, RAVEN acts as a deterministic controller in which the set of control logic laws (user defined) monitors the RELAP-7 simulation and controls the activation of specific systems. Moreover, RAVEN also models stochastic events, such as components failures, and performs uncertainty quantification. Such stochastic modeling is employed by using both MC and DET algorithms. In the second task, RAVEN processes the large amount of data generated by RELAP-7 using data-mining based algorithms. This paper focuses on the first task and shows how it is possible to perform the analysis of dynamic stochastic systems using the newly developed RAVEN DET capability. As an example, the Dynamic PRA analysis, using Dynamic Event Tree, of a simplified pressurized water reactor for a Station Black-Out scenario is presented.

  9. Development of a non-chromatographic method for the speciation analysis of inorganic antimony in mushroom samples by hydride generation atomic fluorescence spectrometry

    NASA Astrophysics Data System (ADS)

    Sousa Ferreira, Hadla; Costa Ferreira, Sergio Luis; Cervera, M. Luisa; de la Guardia, Miguel

    2009-06-01

    A simple and sensitive method has been developed for the direct determination of toxic species of antimony in mushroom samples by hydride generation atomic fluorescence spectrometry (HG AFS). The determination of Sb(III) and Sb(V) was based on the efficiency of hydride generation employing NaBH 4, with and without a previous KI reduction, using proportional equations corresponding to the two different measurement conditions. The extraction efficiency of total antimony and the stability of Sb(III) and Sb(V) in different extraction media (nitric, sulfuric, hydrochloric, acetic acid, methanol and ethanol) were evaluated. Results demonstrated that, based on the extraction yield and the stability of extracts, 0.5 mol L - 1 H 2SO 4 proved to be the best extracting solution for the speciation analysis of antimony in mushroom samples. The limits of detection of the developed methodology were 0.6 and 1.1 ng g - 1 for Sb(III) and Sb(V), respectively. The relative standard derivation was 3.8% (14.7 ng g - 1 ) for Sb(V) and 5.1% (4.6 ng g - 1 ) for Sb(III). The recovery values obtained for Sb(III) and Sb(V) varied from 94 to 106% and from 98 to 105%, respectively. The method has been applied to determine Sb(III), Sb(V) and total Sb in five different mushroom samples; the Sb(III) content varied from 4.6 to 11.4 ng g - 1 and Sb(V) from 14.7 to 21.2 ng g - 1 . The accuracy of the method was confirmed by the analysis of a certified reference material of tomato leaves.

  10. Speciation analysis of chromium by separation on a 5-palmitoyl oxine-functionalized XAD-2 resin and spectrophotometric determination with diphenylcarbazide.

    PubMed

    Filik, Hayati; Doğutan, Melek; Apak, Reşat

    2003-07-01

    The method developed in this work for the separation and preconcentration of Cr(III) is based on its retention by an Amberlite XAD-2 copolymer resin functionalized with 5-palmitoyl-8-hydroxyquinoline (oxine), abbreviated XAD-POx, with the ligand covalently bound to the copolymer. Cr(III) sorption was quantitative within the pH range 4.5-7.0 and Cr(VI) was not retained. The Cr(III) held by the resin column was eluted with a hot solution of H(2)O(2) in pH>or=9.0 aqueous NH(3)-NH(4)Cl buffer, and Cr oxidized to CrO(4)(2-) was rejected by the chelating cation-exchanger column. Any Cr(VI) originally present with Cr(III) could be reduced with an acidic solution of H(2)O(2), and retained by the column yielding total Cr results, Cr(VI) being determined from the difference. The resin showed a maximal preconcentration factor of 60 for Cr(III), the LOD and LOQ being 9.3 and 30.1 nmol L(-1), respectively. The developed preconcentration-speciation analysis was finished with a diphenylcarbazide (DPC) spectrophotometric procedure suitable for conventional laboratories. The resin showed excellent salt tolerance, enabling Cr analysis in seawater, and was stable over extended use. All the interferents of this procedure that normally occur in an electroplating effluent, a blended coal CRM, and a standard steel sample could be removed by the recommended procedure, by use of partial and total selectivity at the adsorption and desorption stages, respectively, enabling preconcentration and colorimetric determination of chromium in various complex matrices. PMID:12819851

  11. Chemical Speciation of Sulfur in Marine Cloud Droplets and Particles: Analysis of Individual Particles from the Marine Boundary Layer Over the California Current

    SciTech Connect

    Hopkins, Rebecca J; Desyaterik, Yury; Tivanski, Alexei V; Zaveri, Rahul A; Berkowitz, Carl M; Tyliszczak, T; Gilles, Marry K; Laskin, Alexander

    2008-02-27

    Detailed chemical speciation of the dry residue particles from individual cloud droplets and interstitial aerosol collected during the Marine Stratus Experiment (MASE) was performed using a complementary combination of microanalysis techniques. Techniques include computer controlled scanning electron microscopy with energy dispersed analysis of X-rays (CCSEM/EDX), time-of-flight secondary ionization mass spectrometry (TOFSIMS), and scanning transmission X-ray microscopy with near edge X-ray absorption fine structure spectroscopy (STXM/NEXAFS). Samples were collected at the ground site located in Point Reyes National Seashore, approximately 1 km from the coast. This manuscript focuses on the analysis of individual particles sampled from an air mass that originated over the open ocean and then passed through the area of the California current located along the northern California coast. Based on composition, morphology, and chemical bonding information, two externally mixed, distinct classes of sulfur containing particles were identified: chemically modified (aged) sea salt particles and secondary formed sulfate particles. The results indicate substantial heterogeneous replacement of chloride by methanesulfonate (CH3SO3-) and non-sea salt sulfate (nss-SO42-) in sea-salt particles with the characteristic ratios of CH3SO3-/nss-SO42-> 0.6. Although this value seems too high for a mid-latitude site, our model calculations suggest that high CH3SO3-/nss-SO42- ratios are expected during the early stages of dimethyl sulfide (DMS) oxidation when CH3SO3H forms more rapidly than H2SO4.

  12. Speciation in the Deep Sea: Multi-Locus Analysis of Divergence and Gene Flow between Two Hybridizing Species of Hydrothermal Vent Mussels

    PubMed Central

    Faure, Baptiste; Jollivet, Didier; Tanguy, Arnaud; Bonhomme, François; Bierne, Nicolas

    2009-01-01

    Background Reconstructing the history of divergence and gene flow between closely-related organisms has long been a difficult task of evolutionary genetics. Recently, new approaches based on the coalescence theory have been developed to test the existence of gene flow during the process of divergence. The deep sea is a motivating place to apply these new approaches. Differentiation by adaptation can be driven by the heterogeneity of the hydrothermal environment while populations should not have been strongly perturbed by climatic oscillations, the main cause of geographic isolation at the surface. Methodology/Principal Finding Samples of DNA sequences were obtained for seven nuclear loci and a mitochondrial locus in order to conduct a multi-locus analysis of divergence and gene flow between two closely related and hybridizing species of hydrothermal vent mussels, Bathymodiolus azoricus and B. puteoserpentis. The analysis revealed that (i) the two species have started to diverge approximately 0.760 million years ago, (ii) the B. azoricus population size was 2 to 5 time greater than the B. puteoserpentis and the ancestral population and (iii) gene flow between the two species occurred over the complete species range and was mainly asymmetric, at least for the chromosomal regions studied. Conclusions/Significance A long history of gene flow has been detected between the two Bathymodiolus species. However, it proved very difficult to conclusively distinguish secondary introgression from ongoing parapatric differentiation. As powerful as coalescence approaches could be, we are left by the fact that natural populations often deviates from standard assumptions of the underlying model. A more direct observation of the history of recombination at one of the seven loci studied suggests an initial period of allopatric differentiation during which recombination was blocked between lineages. Even in the deep sea, geographic isolation may well be a crucial promoter of speciation

  13. The drivers of tropical speciation.

    PubMed

    Smith, Brian Tilston; McCormack, John E; Cuervo, Andrés M; Hickerson, Michael J; Aleixo, Alexandre; Cadena, Carlos Daniel; Pérez-Emán, Jorge; Burney, Curtis W; Xie, Xiaoou; Harvey, Michael G; Faircloth, Brant C; Glenn, Travis C; Derryberry, Elizabeth P; Prejean, Jesse; Fields, Samantha; Brumfield, Robb T

    2014-11-20

    Since the recognition that allopatric speciation can be induced by large-scale reconfigurations of the landscape that isolate formerly continuous populations, such as the separation of continents by plate tectonics, the uplift of mountains or the formation of large rivers, landscape change has been viewed as a primary driver of biological diversification. This process is referred to in biogeography as vicariance. In the most species-rich region of the world, the Neotropics, the sundering of populations associated with the Andean uplift is ascribed this principal role in speciation. An alternative model posits that rather than being directly linked to landscape change, allopatric speciation is initiated to a greater extent by dispersal events, with the principal drivers of speciation being organism-specific abilities to persist and disperse in the landscape. Landscape change is not a necessity for speciation in this model. Here we show that spatial and temporal patterns of genetic differentiation in Neotropical birds are highly discordant across lineages and are not reconcilable with a model linking speciation solely to landscape change. Instead, the strongest predictors of speciation are the amount of time a lineage has persisted in the landscape and the ability of birds to move through the landscape matrix. These results, augmented by the observation that most species-level diversity originated after episodes of major Andean uplift in the Neogene period, suggest that dispersal and differentiation on a matrix previously shaped by large-scale landscape events was a major driver of avian speciation in lowland Neotropical rainforests. PMID:25209666

  14. Case studies and mathematical models of ecological speciation. 4. Hybrid speciation in butterflies in a jungle.

    PubMed

    Duenez-Guzman, Edgar A; Mavárez, Jesus; Vose, Michael D; Gavrilets, Sergey

    2009-10-01

    We build a spatial individual-based multilocus model of homoploid hybrid speciation tailored for a tentative case of hybrid origin of Heliconius heurippa from H. melpomene and H. cydno in South America. Our model attempts to account for empirical patterns and data on genetic incompatibility, mating preferences and selection by predation (both based on coloration patterns), habitat preference, and local adaptation for all three Heliconius species. Using this model, we study the likelihood of recombinational speciation and identify the effects of various ecological and genetic parameters on the dynamics, patterns, and consequences of hybrid ecological speciation. Overall, our model supports the possibility of hybrid origin of H. heurippa under certain conditions. The most plausible scenario would include hybridization between H. melpomene and H. cydno in an area geographically isolated from the rest of both parental species with subsequent long-lasting geographic isolation of the new hybrid species, followed by changes in the species ranges, the secondary contact, and disappearance of H. melpomene-type ecomorph in the hybrid species. However, much more work (both empirical and theoretical) is necessary to be able to make more definite conclusions on the importance of homoploid hybrid speciation in animals. PMID:19545268

  15. Dynamic Analysis of Nuclear Energy System Strategies

    SciTech Connect

    Den Durpel, Luc Van

    2004-06-17

    DANESS is an integrated process model for nuclear energy systems allowing the simulation of multiple reactors and fuel cycles in a continuously changing nuclear reactor park configuration. The model is energy demand driven and simulates all nuclear fuel cycle facilites, up to 10 reactors and fuels. Reactor and fuel cycle facility history are traced and the cost of generating energy is calculated per reactor and for total nuclear energy system. The DANESS model aims at performing dynamic systems analysis of nuclear energy development used for integrated analysis of development paths for nuclear energy, parameter scoping for new nuclear energy systems, economic analysis of nuclear energy, government role analysis, and education.

  16. Dynamical coupled-channel analysis at EBAC.

    SciTech Connect

    Lee, T.-S. H.; Physics

    2008-01-01

    In this contribution, the author reports on the dynamical coupled-channels analysis being pursued at the Excited Baryon Analysis Center (EBAC) of Jefferson Laboratory. EBAC was established in January 2006. Its objective is to extract the parameters associated with the excited states (N*) of the nucleon from the world data of meson production reactions, and to also develop theoretical interpretations of the extracted N* parameters.

  17. Dynamic analysis for shuttle design verification

    NASA Technical Reports Server (NTRS)

    Fralich, R. W.; Green, C. E.; Rheinfurth, M. H.

    1972-01-01

    Two approaches that are used for determining the modes and frequencies of space shuttle structures are discussed. The first method, direct numerical analysis, involves finite element mathematical modeling of the space shuttle structure in order to use computer programs for dynamic structural analysis. The second method utilizes modal-coupling techniques of experimental verification made by vibrating only spacecraft components and by deducing modes and frequencies of the complete vehicle from results obtained in the component tests.

  18. Pushing back the frontiers of mercury speciation using a combination of biomolecular and isotopic signatures: challenge and perspectives.

    PubMed

    Pedrero, Zoyne; Donard, Olivier F X; Amouroux, David

    2016-04-01

    Mercury (Hg) pollution is considered a major environmental problem due to the extreme toxicity of Hg. However, Hg metabolic pathways in biota remain elusive. An understanding of these pathways is crucial to elucidating the (eco)toxic effects of Hg and its biogeochemical cycle. The development of a new analytical methodology based on both speciation and natural isotopic fractionation represents a promising approach for metabolic studies of Hg and other metal(loid)s. Speciation provides valuable information about the reactivity and potential toxicity of metabolites, while the use of natural isotopic signature analysis adds a complementary dynamic dimension that allows the life history of the target element to be probed, the source of the target element (i.e., the source of pollution) to be identified, and reactions to be tracked. The resulting combined (bio)molecular and isotopic signature affords precious insight into the behavior of Hg in biota and Hg detoxification mechanisms. In the long term, this highly innovative methodology could be used in life and environmental science studies of metal(loid)s to push back the frontiers of our knowledge in this field. This paper summarizes the current status of the application of Hg speciation and the isotopic signature of Hg at the biomolecular level in living organisms, and discusses potential future uses of this combination of techniques. Graphical Abstract Application of Hg speciation and the isotopic signature of Hg to enhance our understanding of the roles of Hg in metabolic, toxicological, and environmental processes. PMID:26753975

  19. Final Report Computational Analysis of Dynamical Systems

    SciTech Connect

    Guckenheimer, John

    2012-05-08

    This is the final report for DOE Grant DE-FG02-93ER25164, initiated in 1993. This grant supported research of John Guckenheimer on computational analysis of dynamical systems. During that period, seventeen individuals received PhD degrees under the supervision of Guckenheimer and over fifty publications related to the grant were produced. This document contains copies of these publications.

  20. Non-chromatographic speciation analysis of mercury by flow injection on-line preconcentration in combination with chemical vapor generation atomic fluorescence spectrometry

    NASA Astrophysics Data System (ADS)

    Wu, Hong; Jin, Yan; Han, Weiying; Miao, Qiang; Bi, Shuping

    2006-07-01

    A novel non-chromatographic approach for direct speciation of mercury, based on the selective retention inorganic mercury and methylmercury on the inner wall of a knotted reactor by using ammonium diethyl dithiophosphate and dithizone as complexing agents respectively, was developed for flow injection on-line sorption preconcentration coupled with chemical vapor generation non-dispersive atomic fluorescence spectrometry. With the sample pH kept at 2.0, the preconcentration of inorganic mercury on the inner walls of the knotted reactor was carried out based on the exclusive retention of Hg-DDP complex in the presence of methylmercury via on-line merging the sample solution with ammonium diethyl dithiophosphate solution, and selective preconcentration methylmercury was achieved with dithizone instead of ammonium diethyl dithiophosphate. A 15% (v/v) HCl was introduced to elute the retained mercury species and merge with KBH 4 solution for atomic fluorescence spectrometry detection. Under the optimal experimental conditions, the sample throughputs of inorganic mercury and methylmercury were 30 and 20 h - 1 with the enhancement factors of 13 and 24. The detection limits were found to be 3.6 ng l - 1 for Hg 2+ and 2.0 ng l - 1 for CH 3Hg +. The precisions (RSD) for the 11 replicate measurements of each 0.2 μg l - 1 of Hg 2+ and CH 3Hg + were 2.2% and 2.8%, respectively. The developed method was validated by the analysis of certified reference materials (simulated natural water, rice flour and pork) and by recovery measurements on spiked samples, and was applied to the determination of inorganic mercury and methylmercury in biological and environmental water samples.

  1. Speciation Analysis of Labile and Total Silver(I) in Nanosilver Dispersions and Environmental Waters by Hollow Fiber Supported Liquid Membrane Extraction.

    PubMed

    Chao, Jing-Bo; Zhou, Xiao-Xia; Shen, Mo-Hai; Tan, Zhi-Qiang; Liu, Rui; Yu, Su-Juan; Wang, Xiao-Wei; Liu, Jing-Fu

    2015-12-15

    Hollow fiber supported liquid membrane (HFSLM) extraction was coupled with ICP-MS for speciation analysis of labile Ag(I) and total Ag(I) in dispersions of silver nanoparticles (AgNPs) and environmental waters. Ag(I) in aqueous samples was extracted into the HFSLM of 5%(m/v) tri-n-octylphosphine oxide in n-undecane, and stripped in the acceptor of 10 mM Na2S2O3 and 1 mM Cu(NO3)2 prepared in 5 mM NaH2PO4-Na2HPO4 buffer (pH 7.5). Negligible depletion and exhaustive extraction were conducted under static and 250 rpm shaking to extract the labile Ag(I) and total Ag(I), respectively. The extraction equilibration was reached in 8 h for both extraction modes. The extraction efficiency and detection limit were (2.97 ± 0.25)% and 0.1 μg/L for labile Ag(I), and (82.3 ± 2.0)% and 0.5 μg/L for total Ag(I) detection, respectively. The proposed method was applied to determine labile Ag(I) and total Ag(I) in different sized AgNP dispersions and real environmental waters, with spiked recoveries of total Ag(I) in the range of 74.0-98.1%. With the capability of distinguishing labile and total Ag(I), our method offers a new approach for evaluating the bioavailability and understanding the fate and toxicity of AgNPs in aquatic systems. PMID:26580982

  2. Topological analysis of chaotic dynamical systems

    NASA Astrophysics Data System (ADS)

    Gilmore, Robert

    1998-10-01

    Topological methods have recently been developed for the analysis of dissipative dynamical systems that operate in the chaotic regime. They were originally developed for three-dimensional dissipative dynamical systems, but they are applicable to all ``low-dimensional'' dynamical systems. These are systems for which the flow rapidly relaxes to a three-dimensional subspace of phase space. Equivalently, the associated attractor has Lyapunov dimension dL<3. Topological methods supplement methods previously developed to determine the values of metric and dynamical invariants. However, topological methods possess three additional features: they describe how to model the dynamics; they allow validation of the models so developed; and the topological invariants are robust under changes in control-parameter values. The topological-analysis procedure depends on identifying the stretching and squeezing mechanisms that act to create a strange attractor and organize all the unstable periodic orbits in this attractor in a unique way. The stretching and squeezing mechanisms are represented by a caricature, a branched manifold, which is also called a template or a knot holder. This turns out to be a version of the dynamical system in the limit of infinite dissipation. This topological structure is identified by a set of integer invariants. One of the truly remarkable results of the topological-analysis procedure is that these integer invariants can be extracted from a chaotic time series. Furthermore, self-consistency checks can be used to confirm the integer values. These integers can be used to determine whether or not two dynamical systems are equivalent; in particular, they can determine whether a model developed from time-series data is an accurate representation of a physical system. Conversely, these integers can be used to provide a model for the dynamical mechanisms that generate chaotic data. In fact, the author has constructed a doubly discrete classification of strange

  3. SPECIATE 4.0: SPECIATION DATABASE DEVELOPMENT DOCUMENTATION--FINAL REPORT

    EPA Science Inventory

    SPECIATE is the U.S. EPA's repository of total organic compounds (TOC) and particulate matter (PM) speciation profiles of air pollution sources. This report documents how EPA developed the SPECIATE 4.0 database that replaces the prior version, SPECIATE 3.2. SPECIATE 4.0 includes ...

  4. Chemical Speciation Analysis of Sports Drinks by Acid-Base Titrimetry and Ion Chromatography: A Challenging Beverage Formulation Project

    ERIC Educational Resources Information Center

    Drossman, Howard

    2007-01-01

    Students have standardized a sodium hydroxide solution and analyzed commercially available sports drinks by titrimetric analysis of the triprotic citric acid, dihydrogen phosphate, and dihydrogen citrate and by ion chromatography for chloride, total phosphate and citrate. These experiments are interesting examples of analyzing real-world food and…

  5. Flight Dynamics Analysis Branch 2005 Technical Highlights

    NASA Technical Reports Server (NTRS)

    2005-01-01

    This report summarizes the major activities and accomplishments carried out by the Flight Dynamics Analysis Branch (FDAB), Code 595, in support of flight projects and technology development initiatives in Fiscal Year (FY) 2005. The report is intended to serve as a summary of the type of support carried out by the FDAB, as well as a concise reference of key accomplishments and mission experience derived from the various mission support roles. The primary focus of the FDAB is to provide expertise in the disciplines of flight dynamics including spacecraft navigation (autonomous and ground based); spacecraft trajectory design and maneuver planning; attitude analysis; attitude determination and sensor calibration; and attitude control subsystem (ACS) analysis and design. The FDAB currently provides support for missions and technology development projects involving NASA, other government agencies, academia, and private industry.

  6. Dynamic analysis of very flexible beams

    NASA Astrophysics Data System (ADS)

    Fotouhi, R.

    2007-08-01

    The dynamic analysis of flexible beams with large deformations is difficult and few studies have been performed. In this paper, the vibration analysis of several very flexible beams with large deflections using the finite element approach is studied. The examples were a cantilever beam and rotating flexible robot arms. The results were compared with the results available in the published literature. Several successful checks on the finite element results were performed to ensure the accuracy of the solutions. Due to the geometrical nonlinearity, several static equilibrium shapes can exist for large deflections of a cantilever beam for a given load. Nonlinear dynamic finite element analysis was implemented to investigate the stability of these shapes.

  7. Automated dynamic hollow fiber liquid-liquid-liquid microextraction combined with capillary electrophoresis for speciation of mercury in biological and environmental samples.

    PubMed

    Li, Pingjing; He, Man; Chen, Beibei; Hu, Bin

    2015-10-01

    A simple home-made automatic dynamic hollow fiber based liquid-liquid-liquid microextraction (AD-HF-LLLME) device was designed and constructed for the simultaneous extraction of organomercury and inorganic mercury species with the assistant of a programmable flow injection analyzer. With 18-crown-6 as the complexing reagent, mercury species including methyl-, ethyl-, phenyl- and inorganic mercury were extracted into the organic phase (chlorobenzene), and then back-extracted into the acceptor phase of 0.1% (m/v) 3-mercapto-1-propanesulfonic acid (MPS) aqueous solution. Compared with automatic static (AS)-HF-LLLME system, the extraction equilibrium of target mercury species was obtained in shorter time with higher extraction efficiency in AD-HF-LLLME system. Based on it, a new method of AD-HF-LLLME coupled with large volume sample stacking (LVSS)-capillary electrophoresis (CE)/UV detection was developed for the simultaneous analysis of methyl-, phenyl- and inorganic mercury species in biological samples and environmental water. Under the optimized conditions, AD-HF-LLLME provided high enrichment factors (EFs) of 149-253-fold within relatively short extraction equilibrium time (25min) and good precision with RSD between 3.8 and 8.1%. By combining AD-HF-LLLME with LVSS-CE/UV, EFs were magnified up to 2195-fold and the limits of detection (at S/N=3) for target mercury species were improved to be sub ppb level. PMID:26363947

  8. Dynamical analysis of generalized Galileon cosmology

    SciTech Connect

    Leon, Genly; Saridakis, Emmanuel N. E-mail: Emmanuel_Saridakis@baylor.edu

    2013-03-01

    We perform a detailed dynamical analysis of generalized Galileon cosmology, incorporating also the requirements of ghost and instabilities absence. We find that there are not any new stable late-time solutions apart from those of standard quintessence. Furthermore, depending on the model parameters the Galileons may survive at late times or they may completely disappear by the dynamics, however the corresponding observables are always independent of the Galileon terms, determined only by the usual action terms. Thus, although the Galileons can play an important role at inflationary or at recent times, in the future, when the universe will asymptotically reach its stable state, they will not have any effect on its evolution.

  9. Dynamic analysis: a new point of view

    NASA Astrophysics Data System (ADS)

    Chaves, Eduardo W. V.

    2016-05-01

    In this article, an alternative to the classical dynamic equation formulation is presented. To achieve this goal, we need to derive the reciprocal theorem in rates and the principle of virtual work in rates, in a small deformation regime, with which we will be able to obtain an expression for damping force. In this new formulation, some terms that are not commonly considered in the classical formulation appear, e.g., the term that is function of jerk (the rate of change of acceleration). Moreover, in this formulation the term that characterizes material nonlinearity, in dynamic analysis, appears naturally.

  10. Double-sided Microfluidic Device for Speciation Analysis of Iron in Water Samples: Towards Greener Analytical Chemistry.

    PubMed

    Youngvises, Napaporn; Thanurak, Porapichcha; Chaida, Thanatcha; Jukmunee, Jaroon; Alsuhaimi, Awadh

    2015-01-01

    Microfluidics minimize the amounts of reagents and generate less waste. While microdevices are commonly single-sided, producing a substrate with microchannels on multiple surfaces would increase their usefulness. Herein, a polymethymethacrylate substrate incorporating microchannel structures on two sides was sandwiched between two polydimethylsiloxane sheets to create a multi-analysis device, which was used for the spectrophotometric analysis of the ferrous ion (Fe(2+)) and the ferric ion (Fe(3+)), by utilizing colorimetric detection. To monitor the signals from both channel networks, dual optical sensors were integrated into the system. The linear ranges for Fe(2+) and Fe(3+) analyses were 0.1 - 20 mg L(-1) (R(2) = 0.9988) and 1.0 - 40 mg L(-1) (R(2) = 0.9974), respectively. The detection limits for Fe(2+) and Fe(3+) were 0.1 and 0.5 mg L(-1), respectively. The percent recoveries of Fe(2+) and Fe(3+) were 93.5 - 104.3 with an RSD < 8%. The microdevice demonstrated capabilities for simultaneous analysis, low waste generation (7.2 mL h(-1)), and high sample throughput (180 h(-1)), making it ideal for greener analytical chemistry applications. PMID:25958864

  11. Environmental speciation of actinides.

    PubMed

    Maher, Kate; Bargar, John R; Brown, Gordon E

    2013-04-01

    Although minor in abundance in Earth's crust (U, 2-4 ppm; Th, 10-15 ppm) and in seawater (U, 0.003 ppm; Th, 0.0007 ppm), light actinides (Th, Pa, U, Np, Pu, Am, and Cm) are important environmental contaminants associated with anthropogenic activities such as the mining and milling of uranium ores, generation of nuclear energy, and storage of legacy waste resulting from the manufacturing and testing of nuclear weapons. In this review, we discuss the abundance, production, and environmental sources of naturally occurring and some man-made light actinides. As is the case with other environmental contaminants, the solubility, transport properties, bioavailability, and toxicity of actinides are dependent on their speciation (composition, oxidation state, molecular-level structure, and nature of the phase in which the contaminant element or molecule occurs). We review the aqueous speciation of U, Np, and Pu as a function of pH and Eh, their interaction with common inorganic and organic ligands in natural waters, and some of the common U-containing minerals. We also discuss the interaction of U, Np, Pu, and Am solution complexes with common Earth materials, including minerals, colloids, gels, natural organic matter (NOM), and microbial organisms, based on simplified model system studies. These surface interactions can inhibit (e.g., sorption to mineral surfaces, formation of insoluble biominerals) or enhance (e.g., colloid-facilitated transport) the dispersal of light actinides in the biosphere and in some cases (e.g., interaction with dissimilatory metal-reducing bacteria, NOM, or Mn- and Fe-containing minerals) can modify the oxidation states and, consequently, the behavior of redox-sensitive light actinides (U, Np, and Pu). Finally, we review the speciation of U and Pu, their chemical transformations, and cleanup histories at several U.S. Department of Energy field sites that have been used to mill U ores, produce fissile materials for reactors and weapons, and store

  12. Cluster analysis of word frequency dynamics

    NASA Astrophysics Data System (ADS)

    Maslennikova, Yu S.; Bochkarev, V. V.; Belashova, I. A.

    2015-01-01

    This paper describes the analysis and modelling of word usage frequency time series. During one of previous studies, an assumption was put forward that all word usage frequencies have uniform dynamics approaching the shape of a Gaussian function. This assumption can be checked using the frequency dictionaries of the Google Books Ngram database. This database includes 5.2 million books published between 1500 and 2008. The corpus contains over 500 billion words in American English, British English, French, German, Spanish, Russian, Hebrew, and Chinese. We clustered time series of word usage frequencies using a Kohonen neural network. The similarity between input vectors was estimated using several algorithms. As a result of the neural network training procedure, more than ten different forms of time series were found. They describe the dynamics of word usage frequencies from birth to death of individual words. Different groups of word forms were found to have different dynamics of word usage frequency variations.

  13. Precise Analysis of Polymer Rotational Dynamics.

    PubMed

    Kim, Jun Mo; Baig, Chunggi

    2016-01-01

    Through the analysis of individual chain dynamics alongside the corresponding molecular structures under shear via nonequilibrium molecular dynamics simulations of C178H358 linear and short-chain branched polyethylene melts under shear flow, we observed that the conventional method based on the chain end-to-end vector (and/or the gyration tensor of chain) is susceptible to quantitatively inaccurate measurements and often misleading information in describing the rotational dynamics of polymers. Identifying the flaw as attributed to strong irregular Brownian fluctuations inherent to the chain ends associated with their large free volume and strong molecular collisions, we propose a simple, robust way based on the chain center-to-center vector connecting the two centers of mass of the bisected chain, which is shown to adequately describe polymer rotational dynamics without such shortcomings. We present further consideration that the proposed method can be useful in accurately measuring the overall chain structure and dynamics of polymeric materials with various molecular architectures, including branched and ring polymers. PMID:26743689

  14. Niche versus neutrality: a dynamical analysis.

    PubMed

    Kalyuzhny, Michael; Seri, Efrat; Chocron, Rachel; Flather, Curtis H; Kadmon, Ronen; Shnerb, Nadav M

    2014-10-01

    Understanding the forces shaping ecological communities is of crucial importance for basic science and conservation. After 50 years in which ecological theory has focused on either stable communities driven by niche-based forces or nonstable "neutral" communities driven by demographic stochasticity, contemporary theories suggest that ecological communities are driven by the simultaneous effects of both types of mechanisms. Here we examine this paradigm using the longest available records for the dynamics of tropical trees and breeding birds. Applying a macroecological approach and fluctuation analysis techniques borrowed from statistical physics, we show that both stabilizing mechanisms and demographic stochasticity fail to play a dominant role in shaping assemblages over time. Rather, community dynamics in these two very different systems is predominantly driven by environmental stochasticity. Clearly, the current melding of niche and neutral theories cannot account for such dynamics. Our results highlight the need for a new theory of community dynamics integrating environmental stochasticity with weak stabilizing forces and suggest that such theory may better describe the dynamics of ecological communities than current neutral theories, deterministic niche-based theories, or recent hybrids. PMID:25226179

  15. Progress in understanding uranium(IV) speciation and dynamics in biologically reduced sediments: Research at molecular to centimeter scales by the SLAC SFA program

    NASA Astrophysics Data System (ADS)

    Bargar, J.; Williams, K. H.; Campbell, K. M.; Stubbs, J. E.; Suvorova, E.; Lezama-Pacheco, J. S.; Alessi, D.; Stylo, M.; Handley, K. M.; Bernier-Latmani, R.; Cerrato, J.; Davis, J. A.; Fox, P. M.; Giammar, D.; Long, P. E.

    2011-12-01

    The chemical and physical forms of U(IV) in reduced sediments, as well as the biogeochemical processes by which they form and transform, profoundly influence the stability of reduced U(IV) species and the behavior of uranium in biostimulated aquifers. Obtaining such information in field sediments is important because biogeochemical field conditions and their time dependence are difficult to replicate in the laboratory. The majority of contaminated aquifers in which bioremediation is of potential interest, including the Old Rifle, CO IFRC site, exhibit relatively low uranium sediment concentrations, i.e., < 10 ppm, presenting a formidable challenge to the use of spectroscopy and microscopy techniques that typically require 10-fold or higher uranium loadings. We have developed an in-situ column technique to study U(IV) species and evolving microbial communities in the Old Rifle aquifer and to correlate them with changes in trace and major ion groundwater composition during biostimulation treatments. Sediments were examined using x-ray and electron microscopy, x-ray absorption spectroscopy (XAS), and chemical extractions. XAS analysis showed that U(IV) occurred predominantly or exclusively as monomeric U(IV) complexes coordinated to oxo (or similar N/C) neighbors, and is associated with biomass or Fe sulfides. Even in the latter case, U(IV) was not coordinated directly to S neighbors. Sediment-hosted monomeric U(IV) complexes were found to partially transform into uraninite in the aquifer over a subsequent 12 month period. This work establishes the importance of monomeric U(IV) complexes in subsurface sediments at the Old Rifle site and provides a conceptual framework in which previously observed U(IV) reduction products can be related. These experiments also establish that U(IV) species are dynamic in aquifers and can undergo non-oxidative transformation reactions. These new results have important implications for uranium reactive transport models, long

  16. Dynamical robustness analysis of weighted complex networks

    NASA Astrophysics Data System (ADS)

    He, Zhiwei; Liu, Shuai; Zhan, Meng

    2013-09-01

    Robustness of weighted complex networks is analyzed from nonlinear dynamical point of view and with focus on different roles of high-degree and low-degree nodes. We find that the phenomenon for the low-degree nodes being the key nodes in the heterogeneous networks only appears in weakly weighted networks and for weak coupling. For all other parameters, the heterogeneous networks are always highly vulnerable to the failure of high-degree nodes; this point is the same as in the structural robustness analysis. We also find that with random inactivation, heterogeneous networks are always more robust than the corresponding homogeneous networks with the same average degree except for one special parameter. Thus our findings give an integrated picture for the dynamical robustness analysis on complex networks.

  17. Epock: rapid analysis of protein pocket dynamics

    PubMed Central

    Laurent, Benoist; Chavent, Matthieu; Cragnolini, Tristan; Dahl, Anna Caroline E.; Pasquali, Samuela; Derreumaux, Philippe; Sansom, Mark S.P.; Baaden, Marc

    2015-01-01

    Summary: The volume of an internal protein pocket is fundamental to ligand accessibility. Few programs that compute such volumes manage dynamic data from molecular dynamics (MD) simulations. Limited performance often prohibits analysis of large datasets. We present Epock, an efficient command-line tool that calculates pocket volumes from MD trajectories. A plugin for the VMD program provides a graphical user interface to facilitate input creation, run Epock and analyse the results. Availability and implementation: Epock C++ source code, Python analysis scripts, VMD Tcl plugin, documentation and installation instructions are freely available at http://epock.bitbucket.org. Contact: benoist.laurent@gmail.com or baaden@smplinux.de Supplementary information: Supplementary data are available at Bioinformatics online. PMID:25505095

  18. Speciation Mapping of Environmental Samples Using XANES Imaging

    EPA Science Inventory

    Fast X-ray detectors with large solid angles and high dynamic ranges open the door to XANES imaging, in which millions of spectra are collected to image the speciation of metals at micrometre resolution, over areas up to several square centimetres. This paper explores how such mu...

  19. Speciation analysis of lead in marine animals by using capillary electrophoresis couple online with inductively coupled plasma mass spectrometry.

    PubMed

    Chen, Yiquan; Huang, Limei; Wu, Weihua; Ruan, Yajuan; Wu, Zujian; Xue, Zhimin; Fu, FengFu

    2014-05-01

    We herein reported a environment-friendly microwave-assisted extraction used to extract trace lead compounds from marine animals and a ultrasensitive method for the analysis of Pb²⁺, trimethyl lead chloride (TML) and triethyl lead chloride (TEL) by using CE-ICP-MS. The extraction method is simple and has a high extracting efficiency. It can be used to completely extract both inorganic lead and organolead in marine animal samples without altering its species. The analytical method has a detection limit as low as 0.012-0.084 ng Pb/mL for Pb²⁺, TML, and TEL, and can be used to determine ultratrace Pb²⁺, TML, and TEL in marine animals directly without any preconcentration. With the help of above methods, we have successfully determined Pb²⁺, TML, and TEL in clam and oyster tissue within 20 min with a RSD (n = 6) < 5% and a recovery of 91-104%. Our results showed that Pb²⁺ was the main species of lead in clam and oyster, and organolead (TML) was only found in oyster. The proposed method provides a realistic approach for the accurate evaluation of lead pollution in seafood. PMID:24272447

  20. Simplified Dynamic Analysis of Grinders Spindle Node

    NASA Astrophysics Data System (ADS)

    Demec, Peter

    2014-12-01

    The contribution deals with the simplified dynamic analysis of surface grinding machine spindle node. Dynamic analysis is based on the use of the transfer matrix method, which is essentially a matrix form of method of initial parameters. The advantage of the described method, despite the seemingly complex mathematical apparatus, is primarily, that it does not require for solve the problem of costly commercial software using finite element method. All calculations can be made for example in MS Excel, which is advantageous especially in the initial stages of constructing of spindle node for the rapid assessment of the suitability its design. After detailing the entire structure of spindle node is then also necessary to perform the refined dynamic analysis in the environment of FEM, which it requires the necessary skills and experience and it is therefore economically difficult. This work was developed within grant project KEGA No. 023TUKE-4/2012 Creation of a comprehensive educational - teaching material for the article Production technique using a combination of traditional and modern information technology and e-learning.

  1. CORRELATING METAL SPECIATION IN SOILS

    EPA Science Inventory

    Understanding bioavailability of metals from exposure to contaminated soils is a challenging aspect of environmental research. This presentation will examine three areas of research with respect to metal speciation in soils as it relates to bioavailability: 1) Pb immobilization a...

  2. Dynamic Analysis of Nuclear Energy System Strategies

    Energy Science and Technology Software Center (ESTSC)

    2004-06-17

    DANESS is an integrated process model for nuclear energy systems allowing the simulation of multiple reactors and fuel cycles in a continuously changing nuclear reactor park configuration. The model is energy demand driven and simulates all nuclear fuel cycle facilites, up to 10 reactors and fuels. Reactor and fuel cycle facility history are traced and the cost of generating energy is calculated per reactor and for total nuclear energy system. The DANESS model aims atmore » performing dynamic systems analysis of nuclear energy development used for integrated analysis of development paths for nuclear energy, parameter scoping for new nuclear energy systems, economic analysis of nuclear energy, government role analysis, and education.« less

  3. The effect of phytostabilization on Zn speciation in a dredged contaminated sediment using scanning electron microscopy, X-ray fluorescence, EXAFS spectroscopy, and principal components analysis

    NASA Astrophysics Data System (ADS)

    Panfili, Frédéric; Manceau, Alain; Sarret, Géraldine; Spadini, Lorenzo; Kirpichtchikova, Tatiana; Bert, Valérie; Laboudigue, Agnès; Marcus, Matthew A.; Ahamdach, Noureddine; Libert, Marie-Françoise

    2005-05-01

    The maintenance of waterways generates large amounts of dredged sediments, which are deposited on adjacent land surfaces. These sediments are often rich in metal contaminants and present a risk to the local environment. Understanding how the metals are immobilized at the molecular level is critical for formulating effective metal containment strategies such as phytoremediation. In the present work, the mineralogical transformations of Zn-containing phases induced by two graminaceous plants (A grostis tenuis and Festuca rubra) in a contaminated sediment ([Zn] = 4700 mg kg -1, [P 2O 5] = 7000 mg kg -1, pH = 7.8), untreated or amended with hydroxylapatite (AP) or Thomas basic slag (TS), were investigated after two yr of pot experiment by scanning electron microscopy coupled with energy-dispersive spectrometry (SEM-EDS), synchrotron-based X-ray microfluorescence (μ-SXRF), and powder and laterally resolved extended X-ray absorption fine structure (μ-EXAFS) spectroscopy. The number and nature of Zn species were evaluated by principal component (PCA) and least-squares fitting (LSF) analysis of the entire set of μ-EXAFS spectra, which included up to 32 individual spectra from regions of interest varying in chemical composition. Seven Zn species were identified at the micrometer scale: sphalerite, gahnite, franklinite, Zn-containing ferrihydrite and phosphate, (Zn-Al)-hydrotalcite, and Zn-substituted kerolite-like trioctahedral phyllosilicate. Bulk fractions of each species were quantified by LSF of the powder EXAFS spectra to linear combinations of the identified Zn species spectra. In the untreated and unvegetated sediment, Zn was distributed as ˜50% (mole ratio of total Zn) sphalerite, ˜40% Zn-ferrihydrite, and ˜10 to 20% (Zn-Al)-hydrotalcite plus Zn-phyllosilicate. In unvegetated but amended sediments (AP and TS), ZnS and Zn-ferrihydrite each decreased by 10 to 20% and were replaced by Zn-phosphate (˜30˜40%). In the presence of plants, ZnS was almost completely

  4. Vehicle dynamic analysis using neuronal network algorithms

    NASA Astrophysics Data System (ADS)

    Oloeriu, Florin; Mocian, Oana

    2014-06-01

    Theoretical developments of certain engineering areas, the emergence of new investigation tools, which are better and more precise and their implementation on-board the everyday vehicles, all these represent main influence factors that impact the theoretical and experimental study of vehicle's dynamic behavior. Once the implementation of these new technologies onto the vehicle's construction had been achieved, it had led to more and more complex systems. Some of the most important, such as the electronic control of engine, transmission, suspension, steering, braking and traction had a positive impact onto the vehicle's dynamic behavior. The existence of CPU on-board vehicles allows data acquisition and storage and it leads to a more accurate and better experimental and theoretical study of vehicle dynamics. It uses the information offered directly by the already on-board built-in elements of electronic control systems. The technical literature that studies vehicle dynamics is entirely focused onto parametric analysis. This kind of approach adopts two simplifying assumptions. Functional parameters obey certain distribution laws, which are known in classical statistics theory. The second assumption states that the mathematical models are previously known and have coefficients that are not time-dependent. Both the mentioned assumptions are not confirmed in real situations: the functional parameters do not follow any known statistical repartition laws and the mathematical laws aren't previously known and contain families of parameters and are mostly time-dependent. The purpose of the paper is to present a more accurate analysis methodology that can be applied when studying vehicle's dynamic behavior. A method that provides the setting of non-parametrical mathematical models for vehicle's dynamic behavior is relying on neuronal networks. This method contains coefficients that are time-dependent. Neuronal networks are mostly used in various types' system controls, thus

  5. Expansion of epicyclic gear dynamic analysis program

    NASA Technical Reports Server (NTRS)

    Boyd, Linda Smith; Pike, James A.

    1987-01-01

    The multiple mesh/single stage dynamics program is a gear tooth analysis program which determines detailed geometry, dynamic loads, stresses, and surface damage factors. The program can analyze a variety of both epicyclic and single mesh systems with spur or helical gear teeth including internal, external, and buttress tooth forms. The modifications refine the options for the flexible carrier and flexible ring gear rim and adds three options: a floating Sun gear option; a natural frequency option; and a finite element compliance formulation for helical gear teeth. The option for a floating Sun incorporates two additional degrees of freedom at the Sun center. The natural frequency option evaluates the frequencies of planetary, star, or differential systems as well as the effect of additional springs at the Sun center and those due to a flexible carrier and/or ring gear rim. The helical tooth pair finite element calculated compliance is obtained from an automated element breakup of the helical teeth and then is used with the basic gear dynamic solution and stress postprocessing routines. The flexible carrier or ring gear rim option for planetary and star spur gear systems allows the output torque per carrier and ring gear rim segment to vary based on the dynamic response of the entire system, while the total output torque remains constant.

  6. Dynamic feature analysis in bidirectional pedestrian flows

    NASA Astrophysics Data System (ADS)

    Xiao-Xia, Yang; Winnie, Daamen; Serge, Paul Hoogendoorn; Hai-Rong, Dong; Xiu-Ming, Yao

    2016-02-01

    Analysis of dynamic features of pedestrian flows is one of the most exciting topics in pedestrian dynamics. This paper focuses on the effect of homogeneity and heterogeneity in three parameters of the social force model, namely desired velocity, reaction time, and body size, on the moving dynamics of bidirectional pedestrian flows in the corridors. The speed and its deviation in free flows are investigated. Simulation results show that the homogeneous higher desired speed which is less than a critical threshold, shorter reaction time or smaller body size results in higher speed of flows. The free dynamics is more sensitive to the heterogeneity in desired speed than that in reaction time or in body size. In particular, an inner lane formation is observed in normal lanes. Furthermore, the breakdown probability and the start time of breakdown are focused on. This study reveals that the sizes of homogeneous desired speed, reaction time or body size play more important roles in affecting the breakdown than the heterogeneities in these three parameters do. Project supported jointly by the National Natural Science Foundation of China (Grant No. 61233001) and the Fundamental Research Funds for Central Universities of China (Grant No. 2013JBZ007).

  7. Sexual conflict and speciation.

    PubMed Central

    Parker, G A; Partridge, L

    1998-01-01

    We review the significance of two forms of sexual conflict (different evolutionary interests of the two sexes) for genetic differentiation of populations and the evolution of reproductive isolation. Conflicting selection on the alleles at a single locus can occur in males and females if the sexes have different optima for a trait, and there are pleiotropic genetic correlations between the sexes for it. There will then be selection for sex limitation and hence sexual dimorphism. This sex limitation could break down in hybrids and reduce their fitness. Pleiotropic genetic correlations between the sexes could also affect the likelihood of mating in interpopulation encounters. Conflict can also occur between (sex-limited) loci that determine behaviour in males and those that determine behaviour in females. Reproductive isolation may occur by rapid coevolution of male trait and female mating preference. This would tend to generate assortative mating on secondary contact, hence promoting speciation. Sexual conflict resulting from sensory exploitation, polyspermy and the cost of mating could result in high levels of interpopulation mating. If females evolve resistance to make pre- and postmating manipulation, males from one population could be more successful with females from the other, because females would have evolved resistance to their own (but not to the allopatric) males. Between-locus sexual conflict could also occur as a result of conflict between males and females of different populations over the production of unfit hybrids. We develop models which show that females are in general selected to resist such matings and males to persist, and this could have a bearing on both the initial level of interpopulation matings and the likelihood that reinforcement will occur. In effect, selection on males usually acts to promote gene flow and to restrict premating isolation, whereas selection on females usually acts in the reverse direction. We review theoretical models

  8. DEAN: A program for dynamic engine analysis

    NASA Technical Reports Server (NTRS)

    Sadler, G. G.; Melcher, K. J.

    1985-01-01

    The Dynamic Engine Analysis program, DEAN, is a FORTRAN code implemented on the IBM/370 mainframe at NASA Lewis Research Center for digital simulation of turbofan engine dynamics. DEAN is an interactive program which allows the user to simulate engine subsystems as well as a full engine systems with relative ease. The nonlinear first order ordinary differential equations which define the engine model may be solved by one of four integration schemes, a second order Runge-Kutta, a fourth order Runge-Kutta, an Adams Predictor-Corrector, or Gear's method for still systems. The numerical data generated by the model equations are displayed at specified intervals between which the user may choose to modify various parameters affecting the model equations and transient execution. Following the transient run, versatile graphics capabilities allow close examination of the data. DEAN's modeling procedure and capabilities are demonstrated by generating a model of simple compressor rig.

  9. Multicomponent dynamical nucleation theory and sensitivity analysis.

    PubMed

    Kathmann, Shawn M; Schenter, Gregory K; Garrett, Bruce C

    2004-05-15

    Vapor to liquid multicomponent nucleation is a dynamical process governed by a delicate interplay between condensation and evaporation. Since the population of the vapor phase is dominated by monomers at reasonable supersaturations, the formation of clusters is governed by monomer association and dissociation reactions. Although there is no intrinsic barrier in the interaction potential along the minimum energy path for the association process, the formation of a cluster is impeded by a free energy barrier. Dynamical nucleation theory provides a framework in which equilibrium evaporation rate constants can be calculated and the corresponding condensation rate constants determined from detailed balance. The nucleation rate can then be obtained by solving the kinetic equations. The rate constants governing the multistep kinetics of multicomponent nucleation including sensitivity analysis and the potential influence of contaminants will be presented and discussed. PMID:15267849

  10. Velocity fluctuation analysis via dynamic programming

    SciTech Connect

    Schlossberg, D. J.; Gupta, D. K.; Fonck, R. J.; McKee, G. R.; Shafer, M. W.

    2006-10-15

    A new method of calculating one-dimensional velocity fluctuations from spatially resolved density fluctuation measurements is presented. The algorithm uses vector-matching methods of dynamic programming that match structures, such as turbulent fluctuations, in two data sets. The associated time delay between data sets is estimated by determining an optimal path to transform one vector to another. This time-delay-estimation (TDE) method establishes a new benchmark for velocity analysis by achieving higher sensitivity and frequency response than previously developed methods, such as time-resolved cross correlations and wavelets. TDE has been successfully applied to beam emission spectroscopy measurements of density fluctuations to obtain poloidal flow fluctuations associated with such phenomena as the geodesic acoustic mode. The dynamic programming algorithm should allow extension to high frequency velocity fluctuations associated with underlying electrostatic potential and resulting ExB fluctuations.

  11. Complementary arsenic speciation methods: A review

    NASA Astrophysics Data System (ADS)

    Nearing, Michelle M.; Koch, Iris; Reimer, Kenneth J.

    2014-09-01

    The toxicity of arsenic greatly depends on its chemical form and oxidation state (speciation) and therefore accurate determination of arsenic speciation is a crucial step in understanding its chemistry and potential risk. High performance liquid chromatography with inductively coupled mass spectrometry (HPLC-ICP-MS) is the most common analysis used for arsenic speciation but it has two major limitations: it relies on an extraction step (usually from a solid sample) that can be incomplete or alter the arsenic compounds; and it provides no structural information, relying on matching sample peaks to standard peaks. The use of additional analytical methods in a complementary manner introduces the ability to address these disadvantages. The use of X-ray absorption spectroscopy (XAS) with HPLC-ICP-MS can be used to identify compounds not extracted for HPLC-ICP-MS and provide minimal processing steps for solid state analysis that may help preserve labile compounds such as those containing arsenicsbnd sulfur bonds, which can degrade under chromatographic conditions. On the other hand, HPLC-ICP-MS is essential in confirming organoarsenic compounds with similar white line energies seen by using XAS, and identifying trace arsenic compounds that are too low to be detected by XAS. The complementary use of electrospray mass spectrometry (ESI-MS) with HPLC-ICP-MS provides confirmation of arsenic compounds identified during the HPLC-ICP-MS analysis, identification of unknown compounds observed during the HPLC-ICP-MS analysis and further resolves HPLC-ICP-MS by identifying co-eluting compounds. In the complementary use of HPLC-ICP-MS and ESI-MS, HPLC-ICP-MS helps to focus the ESI-MS selection of ions. Numerous studies have shown that the information obtained from HPLC-ICP-MS analysis can be greatly enhanced by complementary approaches.

  12. Oxidation state specific generation of arsines from methylated arsenicals based on L-cysteine treatment in buffered media for speciation analysis by hydride generation-automated cryotrapping-gas chromatography-atomic absorption spectrometry with the multiatomizer

    NASA Astrophysics Data System (ADS)

    Matoušek, Tomáš; Hernández-Zavala, Araceli; Svoboda, Milan; Langrová, Lenka; Adair, Blakely M.; Drobná, Zuzana; Thomas, David J.; Stýblo, Miroslav; Dědina, Jiří

    2008-03-01

    An automated system for hydride generation-cryotrapping-gas chromatography-atomic absorption spectrometry with the multiatomizer is described. Arsines are preconcentrated and separated in a Chromosorb filled U-tube. An automated cryotrapping unit, employing nitrogen gas formed upon heating in the detection phase for the displacement of the cooling liquid nitrogen, has been developed. The conditions for separation of arsines in a Chromosorb filled U-tube have been optimized. A complete separation of signals from arsine, methylarsine, dimethylarsine, and trimethylarsine has been achieved within a 60 s reading window. The limits of detection for methylated arsenicals tested were 4 ng l - 1 . Selective hydride generation is applied for the oxidation state specific speciation analysis of inorganic and methylated arsenicals. The arsines are generated either exclusively from trivalent or from both tri- and pentavalent inorganic and methylated arsenicals depending on the presence of L-cysteine as a prereductant and/or reaction modifier. A TRIS buffer reaction medium is proposed to overcome narrow optimum concentration range observed for the L-cysteine modified reaction in HCl medium. The system provides uniform peak area sensitivity for all As species. Consequently, the calibration with a single form of As is possible. This method permits a high-throughput speciation analysis of metabolites of inorganic arsenic in relatively complex biological matrices such as cell culture systems without sample pretreatment, thus preserving the distribution of tri- and pentavalent species.

  13. Speciation analysis of ¹²⁹I, ¹³⁷Cs, ²³²Th, ²³⁸U, ²³⁹Pu and ²⁴⁰Pu in environmental soil and sediment.

    PubMed

    Qiao, Jixin; Hansen, Violeta; Hou, Xiaolin; Aldahan, Ala; Possnert, Göran

    2012-08-01

    The environmental mobility and bioavailability of radionuclides are related to their physicochemical forms, namely species. We here present a speciation analysis of important radionuclides including (129)I (also (127)I), (137)Cs, (232)Th, (238)U and plutonium isotopes ((239)Pu and (240)Pu) in soil (IAEA-375) and sediment (NIST-4354) standard reference materials and two fresh sediment samples from Øvre Heimdalsvatnet Lake, Norway. A modified sequential extraction protocol was used for the speciation analysis of these samples to obtain fractionation information of target radionuclides. Analytical results reveal that the partitioning behaviour, and thus the potential mobility and bioavailability, are exclusively featured for the individual radionuclide. Iodine is relatively mobile and readily binds to organic matter, while plutonium is mainly bound to both organic matter and nitric acid leachable fractions. Thorium is predominated in nitric acid leachable fraction and caesium is primarily observed in nitric acid and aqua regia leachable fractions and residue. Our analytical results reveal that around 50% of uranium might still remain in the residue which could not be extracted with aggressive acid, namely, aqua regia. PMID:22750199

  14. Arabidopsis hybrid speciation processes

    PubMed Central

    Schmickl, Roswitha; Koch, Marcus A.

    2011-01-01

    The genus Arabidopsis provides a unique opportunity to study fundamental biological questions in plant sciences using the diploid model species Arabidopsis thaliana and Arabidopsis lyrata. However, only a few studies have focused on introgression and hybrid speciation in Arabidopsis, although polyploidy is a common phenomenon within this genus. More recently, there is growing evidence of significant gene flow between the various Arabidopsis species. So far, we know Arabidopsis suecica and Arabidopsis kamchatica as fully stabilized allopolyploid species. Both species evolved during Pleistocene glaciation and deglaciation cycles in Fennoscandinavia and the amphi-Beringian region, respectively. These hybrid studies were conducted either on a phylogeographic scale or reconstructed experimentally in the laboratory. In our study we focus at a regional and population level. Our research area is located in the foothills of the eastern Austrian Alps, where two Arabidopsis species, Arabidopsis arenosa and A. lyrata ssp. petraea, are sympatrically distributed. Our hypothesis of genetic introgression, migration, and adaptation to the changing environment during the Pleistocene has been confirmed: We observed significant, mainly unidirectional gene flow between the two species, which has given rise to the tetraploid A. lyrata. This cytotype was able to escape from the narrow ecological niche occupied by diploid A. lyrata ssp. petraea on limestone outcrops by migrating northward into siliceous areas, leaving behind a trail of genetic differentiation. PMID:21825128

  15. DynaMod: dynamic functional modularity analysis

    PubMed Central

    Sun, Choong-Hyun; Hwang, Taeho; Oh, Kimin; Yi, Gwan-Su

    2010-01-01

    A comprehensive analysis of enriched functional categories in differentially expressed genes is important to extract the underlying biological processes of genome-wide expression profiles. Moreover, identification of the network of significant functional modules in these dynamic processes is an interesting challenge. This study introduces DynaMod, a web-based application that identifies significant functional modules reflecting the change of modularity and differential expressions that are correlated with gene expression profiles under different conditions. DynaMod allows the inspection of a wide variety of functional modules such as the biological pathways, transcriptional factor–target gene groups, microRNA–target gene groups, protein complexes and hub networks involved in protein interactome. The statistical significance of dynamic functional modularity is scored based on Z-statistics from the average of mutual information (MI) changes of involved gene pairs under different conditions. Significantly correlated gene pairs among the functional modules are used to generate a correlated network of functional categories. In addition to these main goals, this scoring strategy supports better performance to detect significant genes in microarray analyses, as the scores of correlated genes show the superior characteristics of the significance analysis compared with those of individual genes. DynaMod also offers cross-comparison between different analysis outputs. DynaMod is freely accessible at http://piech.kaist.ac.kr/dynamod. PMID:20460468

  16. Sexual selection drives speciation in an Amazonian frog

    USGS Publications Warehouse

    Boul, K.E.; Funk, W.C.; Darst, C.R.; Cannatella, D.C.; Ryan, M.J.

    2007-01-01

    One proposed mechanism of speciation is divergent sexual selection, whereby divergence in female preferences and male signals results in behavioural isolation. Despite the appeal of this hypothesis, evidence for it remains inconclusive. Here, we present several lines of evidence that sexual selection is driving behavioural isolation and speciation among populations of an Amazonian frog (Physalaemus petersi). First, sexual selection has promoted divergence in male mating calls and female preferences for calls between neighbouring populations, resulting in strong behavioural isolation. Second, phylogenetic analysis indicates that populations have become fixed for alternative call types several times throughout the species' range, and coalescent analysis rejects genetic drift as a cause for this pattern, suggesting that this divergence is due to selection. Finally, gene flow estimated with microsatellite loci is an average of 30 times lower between populations with different call types than between populations separated by a similar geographical distance with the same call type, demonstrating genetic divergence and incipient speciation. Taken together, these data provide strong evidence that sexual selection is driving behavioural isolation and speciation, supporting sexual selection as a cause for speciation in the wild. ?? 2006 The Royal Society.

  17. Speciation of Energy Critical Elements in Marine Ferromanganese Crusts and Nodules by Principal Component Analysis and Least-squares fits to XAFS Spectra

    NASA Astrophysics Data System (ADS)

    Foster, A. L.; Klofas, J. M.; Hein, J. R.; Koschinsky, A.; Bargar, J.; Dunham, R. E.; Conrad, T. A.

    2011-12-01

    Marine ferromanganese crusts and nodules ("Fe-Mn crusts") are considered a potential mineral resource due to their accumulation of several economically-important elements at concentrations above mean crustal abundances. They are typically composed of intergrown Fe oxyhydroxide and Mn oxide; thicker (older) crusts can also contain carbonate fluorapatite. We used X-ray absorption fine-structure (XAFS) spectroscopy, a molecular-scale structure probe, to determine the speciation of several elements (Te, Bi, Mo, Zr, Pt) in Fe-Mn crusts. As a first step in analysis of this dataset, we have conducted principal component analysis (PCA) of Te K-edge and Mo K-edge, k3-weighted XAFS spectra. The sample set consisted of 12 homogenized, ground Fe-Mn crust samples from 8 locations in the global ocean. One sample was subjected to a chemical leach to selectively remove Mn oxides and the elements associated with it. The samples in the study set contain 50-205 mg/kg Te (average = 88) and 97-802 mg/kg Mo (average = 567). PCAs of background-subtracted, normalized Te K-edge and Mo K-edge XAFS spectra were performed on a data matrix of 12 rows x 122 columns (rows = samples; columns = Te or Mo fluorescence value at each energy step) and results were visualized without rotation. The number of significant components was assessed by the Malinowski indicator function and ability of the components to reconstruct the features (minus noise) of all sample spectra. Two components were significant by these criteria for both Te and Mo PCAs and described a total of 74 and 75% of the total variance, respectively. Reconstruction of potential model compounds by the principal components derived from PCAs on the sample set ("target transformation") provides a means of ranking models in terms of their utility for subsequent linear-combination, least-squares (LCLS) fits (the next step of data analysis). Synthetic end-member models of Te4+, Te6+, and Mo adsorbed to Fe(III) oxyhydroxide and Mn oxide were

  18. Architectural Analysis of Dynamically Reconfigurable Systems

    NASA Technical Reports Server (NTRS)

    Lindvall, Mikael; Godfrey, Sally; Ackermann, Chris; Ray, Arnab; Yonkwa, Lyly

    2010-01-01

    oTpics include: the problem (increased flexibility of architectural styles decrease analyzability, behavior emerges and varies depending on the configuration, does the resulting system run according to the intended design, and architectural decisions can impede or facilitate testing); top down approach to architecture analysis, detection of defects and deviations, and architecture and its testability; currently targeted projects GMSEC and CFS; analyzing software architectures; analyzing runtime events; actual architecture recognition; GMPUB in Dynamic SAVE; sample output from new approach; taking message timing delays into account; CFS examples of architecture and testability; some recommendations for improved testablity; and CFS examples of abstract interfaces and testability; CFS example of opening some internal details.

  19. Perturbation analysis for patch occupancy dynamics

    USGS Publications Warehouse

    Martin, Julien; Nichols, James D.; McIntyre, Carol L.; Ferraz, Goncalo; Hines, James E.

    2009-01-01

    Perturbation analysis is a powerful tool to study population and community dynamics. This article describes expressions for sensitivity metrics reflecting changes in equilibrium occupancy resulting from small changes in the vital rates of patch occupancy dynamics (i.e., probabilities of local patch colonization and extinction). We illustrate our approach with a case study of occupancy dynamics of Golden Eagle (Aquila chrysaetos) nesting territories. Examination of the hypothesis of system equilibrium suggests that the system satisfies equilibrium conditions. Estimates of vital rates obtained using patch occupancy models are used to estimate equilibrium patch occupancy of eagles. We then compute estimates of sensitivity metrics and discuss their implications for eagle population ecology and management. Finally, we discuss the intuition underlying our sensitivity metrics and then provide examples of ecological questions that can be addressed using perturbation analyses. For instance, the sensitivity metrics lead to predictions about the relative importance of local colonization and local extinction probabilities in influencing equilibrium occupancy for rare and common species.

  20. Dynamical Analysis of the SHIELD Galaxies

    NASA Astrophysics Data System (ADS)

    McNichols, Andrew Thomas; Teich, Yaron G.; Cannon, John M.

    2015-08-01

    We present a dynamical analysis of the 12 extremely low-mass dwarf galaxies that comprise SHIELD, a product of the Arecibo Legacy Fast ALFA survey (ALFALFA). We use multi-configuration, high spatial (˜ 150 - 350 pc) and spectral (0.82 - 2.46 km s-1 ch-1) resolution data obtained from 21 cm observations conducted with the Karl G. Jansky Very Large Array. For each source, we attempt to derive an inclination-corrected rotation curve, to calculate the maximum rotation velocity (≤ 30 km s-1 for the survey population), and to further constrain the H I mass. For sources from which a sufficiently precise rotation curve can be derived, we use spatially resolved Spitzer Space Telescope 3.6 and 4.5 μm images to determine the stellar mass as a function of radius. The gaseous and stellar mass estimates are then used to decompose the total dynamical mass values and to obtain neutral gas fractions and relative baryonic content. Characterizing the kinematics of the SHIELD galaxies allows us to draw more general conclusions about the structure and dynamical evolution of low mass dwarf galaxies in the local universe.This work is a result of collaboration with the SHIELD Team and is supported by NSF grant 1211683.

  1. Dynamic analysis of the Milad Tower

    NASA Astrophysics Data System (ADS)

    Wilhelm, Edwin; Ford, Mitchell; Coelho, Darren; Lawler, Lachlan; Ansourian, Peter; Alonso-Marroquin, Fernando; Tahmasebinia, Faham

    2016-08-01

    This report involves the modelling of the Milad Tower using the finite element analysis program Strand7. A dynamic analysis was performed on the structure in order to understand the deflections and stresses as a result of earthquake and wind loading. In particular, Linear Static as well as Natural Frequency and Spectral Response solvers were used to determine the behaviour of the structure under loading. The findings of the report highlight that the structure was modelled accurately with the outputs representing realistic values. The report suggests that the design of the beams, columns, slabs and all structural members was sufficient enough to support the tower during maximum loading cases. The governing load case was earthquake loading.

  2. NERVA 400E thrust train dynamic analysis

    NASA Technical Reports Server (NTRS)

    Vronay, D. F.

    1972-01-01

    The natural frequencies and dynamic responses of the NERVA 400E engine thrust train were determined for nuclear space operations (NSO), and earth-orbital shuttle (EOS) during launch and boost conditions. For NSO, a mini-tank configuration was analyzed with the forward end of the upper truss assumed fixed at the stage/mini-tank interface. For EOS, both a mini-tank and an engine only configuration were analyzed for a specific engine assembly support (EAS) stiffness. For all cases the effect of the shield on dynamic response characteristics was determined by performing parallel analyses with and without the shield. Gimbaling loads were not generated as that effort was scheduled after the termination date. The analysis, while demonstrating the adequacy of the engine design, revealed serious deficiencies in the EAS. Responses at the unsupported ends of the engine are excessive. Responses at the nuclear subsystem interface appear acceptable. It is recommended that additional analysis and design effort be expended upon the EAS to ensure that all engine responses stay within reasonable bounds.

  3. Comparative Sensitivity Analysis of Muscle Activation Dynamics

    PubMed Central

    Rockenfeller, Robert; Günther, Michael; Schmitt, Syn; Götz, Thomas

    2015-01-01

    We mathematically compared two models of mammalian striated muscle activation dynamics proposed by Hatze and Zajac. Both models are representative for a broad variety of biomechanical models formulated as ordinary differential equations (ODEs). These models incorporate parameters that directly represent known physiological properties. Other parameters have been introduced to reproduce empirical observations. We used sensitivity analysis to investigate the influence of model parameters on the ODE solutions. In addition, we expanded an existing approach to treating initial conditions as parameters and to calculating second-order sensitivities. Furthermore, we used a global sensitivity analysis approach to include finite ranges of parameter values. Hence, a theoretician striving for model reduction could use the method for identifying particularly low sensitivities to detect superfluous parameters. An experimenter could use it for identifying particularly high sensitivities to improve parameter estimation. Hatze's nonlinear model incorporates some parameters to which activation dynamics is clearly more sensitive than to any parameter in Zajac's linear model. Other than Zajac's model, Hatze's model can, however, reproduce measured shifts in optimal muscle length with varied muscle activity. Accordingly we extracted a specific parameter set for Hatze's model that combines best with a particular muscle force-length relation. PMID:26417379

  4. Comparative Sensitivity Analysis of Muscle Activation Dynamics.

    PubMed

    Rockenfeller, Robert; Günther, Michael; Schmitt, Syn; Götz, Thomas

    2015-01-01

    We mathematically compared two models of mammalian striated muscle activation dynamics proposed by Hatze and Zajac. Both models are representative for a broad variety of biomechanical models formulated as ordinary differential equations (ODEs). These models incorporate parameters that directly represent known physiological properties. Other parameters have been introduced to reproduce empirical observations. We used sensitivity analysis to investigate the influence of model parameters on the ODE solutions. In addition, we expanded an existing approach to treating initial conditions as parameters and to calculating second-order sensitivities. Furthermore, we used a global sensitivity analysis approach to include finite ranges of parameter values. Hence, a theoretician striving for model reduction could use the method for identifying particularly low sensitivities to detect superfluous parameters. An experimenter could use it for identifying particularly high sensitivities to improve parameter estimation. Hatze's nonlinear model incorporates some parameters to which activation dynamics is clearly more sensitive than to any parameter in Zajac's linear model. Other than Zajac's model, Hatze's model can, however, reproduce measured shifts in optimal muscle length with varied muscle activity. Accordingly we extracted a specific parameter set for Hatze's model that combines best with a particular muscle force-length relation. PMID:26417379

  5. Cancer: beyond speciation.

    PubMed

    Vincent, Mark D

    2011-01-01

    A good account of the nature of cancer should provide not only a description of its consistent features, but also how they arise, how they are maintained, why conventional chemotherapy succeeds, and fails, and where to look for better targets. Cancer was once regarded as enigmatic and inexplicable; more recently, the "mutation theory," based on random alterations in a relatively small set of proto-oncogenes and tumor suppressor genes, has enjoyed widespread acceptance. The "mutation theory," however, is noticeable for its failure to explain the basis of differential chemosensitivity, for providing a paucity of targets, especially druggable ones, and for justifying the development of targeted therapies with, in general, disappointingly abbreviated clinical benefit. Furthermore, this theory has mistakenly predicted a widespread commonality of consistent genetic abnormalities across the range of cancers, whereas the opposite, that is, roiling macrogenomic instability, is generally the rule. In contrast, concerning what actually is consistent, that is, the suite of metabolic derangements common to virtually all, especially aggressive, cancers, the "Mutation Theory" has nothing to say. Other hypotheses merit serious consideration "aneuploidy theories" posit whole-genome instability and imbalance as causally responsible for the propagation of the tumor. Another approach, that is, "derepression atavism," suggests cancer results from the release of an ancient survival program, characterized by the emergence of remarkably primitive features such as unicellularity, fermentation, and immortality; existential goals are served by heuristic genomic instability coupled with host-to-tumor biomass interconversion, mediated by the Warburg effect, a major component of the program. Carcinogenesis is here seen as a process of de-speciation; however, genomic nonrestabilization raises issues as to where on the tree of life cancers belong, as a genuinely alternative modus vivendi

  6. Microscale characterization of sulfur speciation in lake sediments.

    PubMed

    Zeng, Teng; Arnold, William A; Toner, Brandy M

    2013-02-01

    Prairie pothole lakes (PPLs) are naturally sulfur-enriched wetlands in the glaciated prairie region of North America. High sulfate levels and dynamic hydrogeochemistry in combination render PPLs a unique environment to explore the speciation of sedimentary sulfur (S). The goals of this research were to define and quantify the solid-phase S pools in PPL sediments and track seasonal dynamics of S speciation. A quantitative X-ray microprobe method was developed based on S 1s X-ray absorption near-edge structure (XANES) spectroscopy and multienergy X-ray fluorescence mapping. Three S pools-pyritic S, reduced organic S (organic mono- and disulfide), and oxidized S (inorganic sulfate, ester sulfate, and sulfonate)-were identified in PPL sediments. No significant seasonal variation was evident for total S, but S speciation showed a seasonal response. During the spring-summer transition, the reduced organic S decreased from 55 to 15 mol %, with a concomitant rise in the oxidized S. During the summer-fall transition, the trend reversed and the reduced organic S grew to 75 mol % at the expense of the oxidized S. The pyritic S, on the other hand, remained relatively constant (∼22 mol %) over time. The seasonal changes in S speciation have strong potential to force the cycling of elements such as mercury in prairie wetlands. PMID:23282039

  7. Aero-Thermo-Dynamic Mass Analysis

    PubMed Central

    Shiba, Kota; Yoshikawa, Genki

    2016-01-01

    Each gas molecule has its own molecular weight, while such a microscopic characteristic is generally inaccessible, and thus, it is measured indirectly through e.g. ionization in conventional mass analysis. Here, we present a novel approach to the direct measurement of molecular weight through a nanoarchitectonic combination of aerodynamics, thermodynamics, and mechanics, transducing microscopic events into macroscopic phenomena. It is confirmed that this approach can provide molecular weight of virtually any gas or vaporizable liquid sample in real-time without ionization. Demonstrations through analytical calculations, numerical simulations, and experiments verify the validity and versatility of the novel mass analysis realized by a simple setup with a flexible object (e.g. with a bare cantilever and even with a business card) placed in a laminar jet. Owing to its unique and simple working principle, this aero-thermo-dynamic mass analysis (AMA) can be integrated into various analytical devices, production lines, and consumer mobile platforms, opening new chapters in aerodynamics, thermodynamics, mechanics, and mass analysis. PMID:27412335

  8. Aero-Thermo-Dynamic Mass Analysis

    NASA Astrophysics Data System (ADS)

    Shiba, Kota; Yoshikawa, Genki

    2016-07-01

    Each gas molecule has its own molecular weight, while such a microscopic characteristic is generally inaccessible, and thus, it is measured indirectly through e.g. ionization in conventional mass analysis. Here, we present a novel approach to the direct measurement of molecular weight through a nanoarchitectonic combination of aerodynamics, thermodynamics, and mechanics, transducing microscopic events into macroscopic phenomena. It is confirmed that this approach can provide molecular weight of virtually any gas or vaporizable liquid sample in real-time without ionization. Demonstrations through analytical calculations, numerical simulations, and experiments verify the validity and versatility of the novel mass analysis realized by a simple setup with a flexible object (e.g. with a bare cantilever and even with a business card) placed in a laminar jet. Owing to its unique and simple working principle, this aero-thermo-dynamic mass analysis (AMA) can be integrated into various analytical devices, production lines, and consumer mobile platforms, opening new chapters in aerodynamics, thermodynamics, mechanics, and mass analysis.

  9. Aero-Thermo-Dynamic Mass Analysis.

    PubMed

    Shiba, Kota; Yoshikawa, Genki

    2016-01-01

    Each gas molecule has its own molecular weight, while such a microscopic characteristic is generally inaccessible, and thus, it is measured indirectly through e.g. ionization in conventional mass analysis. Here, we present a novel approach to the direct measurement of molecular weight through a nanoarchitectonic combination of aerodynamics, thermodynamics, and mechanics, transducing microscopic events into macroscopic phenomena. It is confirmed that this approach can provide molecular weight of virtually any gas or vaporizable liquid sample in real-time without ionization. Demonstrations through analytical calculations, numerical simulations, and experiments verify the validity and versatility of the novel mass analysis realized by a simple setup with a flexible object (e.g. with a bare cantilever and even with a business card) placed in a laminar jet. Owing to its unique and simple working principle, this aero-thermo-dynamic mass analysis (AMA) can be integrated into various analytical devices, production lines, and consumer mobile platforms, opening new chapters in aerodynamics, thermodynamics, mechanics, and mass analysis. PMID:27412335

  10. Dynamic characterization and analysis of space shuttle SRM solid propellant

    NASA Technical Reports Server (NTRS)

    Hufferd, W. L.

    1979-01-01

    The dynamic response properties of the space shuttle solid rocket moter (TP-H1148) propellant were characterized and the expected limits of propellant variability were established. Dynamic shear modulus tests conducted on six production batches of TP-H1148 at various static and dynamic strain levels over the temperature range from 40 F to 90 F. A heat conduction analysis and dynamic response analysis of the space shuttle solid rocket motor (SRM) were also conducted. The dynamic test results show significant dependence on static and dynamic strain levels and considerable batch-to-batch and within-batch variability. However, the results of the SRM dynamic response analyses clearly demonstrate that the stiffness of the propellant has no consequential on the overall SRM dynamic response. Only the mass of the propellant needs to be considered in the dynamic analysis of the space shuttle SRM.

  11. Heavy metal pollution in vegetables grown in the vicinity of a multi-metal mining area in Gejiu, China: total concentrations, speciation analysis, and health risk.

    PubMed

    Li, Yanyan; Wang, Hongbin; Wang, Haijuan; Yin, Fei; Yang, Xiaoyan; Hu, Yongjun

    2014-11-01

    A field survey was conducted to investigate the present situation and health risk of arsenic (As), lead (Pb), cadmium (Cd), copper (Cu), and zinc (Zn) in soils and vegetables in a multi-metal mining area, Gejiu, China. Furthermore, three vegetables (water spinach, potato, and summer squash) containing high metal concentrations were selected to further analyze metal speciation. The results showed that the average concentrations of five metals in soil exceeded the limiting values, and their bioavailable concentrations were significantly positively correlated to the total ones. Heavy metals in the edible parts of vegetables also exceeded the corresponding standards. The leaves of pakchoi, peppermint, and coriander had a strong metal-accumulative ability and they were not suitable for planting. Except the residue forms, the main forms of metals in the edible parts of three selected vegetables were ethanol-, NaCl-, and HAc-extractable fractions for As, Pb, and Cd, respectively; however, Cu was mainly presented as NaCl-extractable and Zn as HAc-extractable fractions. A high proportion of ethanol-extractable As showed that As bioactivity and toxic effects were the highest. Although the total and bioavailable Cd were high in soil, its speciation in vegetables was mainly presented as HAc-extractable fraction, which has a relatively low bioactivity. Lead and arsenic were imposing a serious threat on the local residents via vegetable consumption. PMID:24952252

  12. Intraparticulate speciation analysis of soft nanoparticulate metal complexes. The impact of electric condensation on the binding of Cd(2+)/Pb(2+)/Cu(2+) by humic acids.

    PubMed

    Town, Raewyn M; van Leeuwen, Herman P

    2016-04-21

    In aqueous dispersions of soft, charged nanoparticles, the physicochemical conditions prevailing within the particle body generally differ substantially from those in the bulk medium. Accordingly it is necessary to define intrinsic descriptors that appropriately reflect the chemical speciation inside the particle's microenvironment. Herein the speciation of divalent metal ions within the body of negatively charged soft nanoparticulate complexants is elaborated for the example case of humic acid association with Cd(ii), Pb(ii) and Cu(ii). The electrostatic effects are described by a two-state model that accounts for counterion condensation in the intraparticulate double layer shell at the particle/medium interface and Donnan partitioning within the bulk of the particle body. Inner-sphere complex formation is defined by an intrinsic binding constant expressed in terms of local reactant concentrations as controlled by the pertinent electrostatic conditions. For the high particle charge density case (Debye length smaller than charged site separation), three distinct intraparticulate metal species are identified, namely free hydrated ions, electrostatically condensed ions, and inner-sphere metal-humic complexes. For all metal ions studied, the electrostatic contribution to the association of the metal ion with the oppositely charged particle is found to account for a substantial fraction of the total metal bound. PMID:27004844

  13. XANES Identification of Plutonium Speciation in RFETS Samples

    SciTech Connect

    LoPresti, V.; Conradson, S.D.; Clark, D.L.

    2009-06-03

    Using primarily X-ray absorption near edge spectroscopy (XANES) with standards run in tandem with samples, probable plutonium speciation was determined for 13 samples from contaminated soil, acid-splash or fire-deposition building interior surfaces, or asphalt pads from the Rocky Flats Environmental Technology Site (RFETS). Save for extreme oxidizing situations, all other samples were found to be of Pu(IV) speciation, supporting the supposition that such contamination is less likely to show mobility off site. EXAFS analysis conducted on two of the 13 samples supported the validity of the XANES features employed as determinants of the plutonium valence.

  14. A genomic perspective on hybridization and speciation

    PubMed Central

    Payseur, Bret A.; Rieseberg, Loren H.

    2016-01-01

    Hybridization among diverging lineages is common in nature. Genomic data provide a special opportunity to characterize the history of hybridization and the genetic basis of speciation. We review existing methods and empirical studies to identify recent advances in the genomics of hybridization, as well as issues that need to be addressed. Notable progress has been made in the development of methods for detecting hybridization and inferring individual ancestries. However, few approaches reconstruct the magnitude and timing of gene flow, estimate the fitness of hybrids or incorporate knowledge of recombination rate. Empirical studies indicate that the genomic consequences of hybridization are complex, including a highly heterogeneous landscape of differentiation. Inferred characteristics of hybridization differ substantially among species groups. Loci showing unusual patterns – which may contribute to reproductive barriers – are usually scattered throughout the genome, with potential enrichment in sex chromosomes and regions of reduced recombination. We caution against the growing trend of interpreting genomic variation in summary statistics across genomes as evidence of differential gene flow. We argue that converting genomic patterns into useful inferences about hybridization will ultimately require models and methods that directly incorporate key ingredients of speciation, including the dynamic nature of gene flow, selection acting in hybrid populations and recombination rate variation. PMID:26836441

  15. Dynamic Analysis of Mobile Device Applications

    SciTech Connect

    Corey Thuen

    2013-01-01

    The On-Device Dynamic Analysis of Mobile Applications (ODAMA) project was started in an effort to protect mobile devices used in Industrial Control Systems (ICS) from cyber attack. Because mobile devices hide as much of the “computer” as possible, the user’s ability to assess the software running on their system is limited. The research team chose Google’s Android platform for this initial research because it is open source and it would give us freedom in our approach, including the ability to modify the mobile device’s operating system itself. The research team concluded that a Privileged Application was the right approach, and the result was ODAMA. This project is an important piece of the work to secure the expanding use of mobile devices with our nation’s critical infrastructure.

  16. Manufacturing in space: Fluid dynamics numerical analysis

    NASA Technical Reports Server (NTRS)

    Robertson, S. J.; Nicholson, L. A.; Spradley, L. W.

    1981-01-01

    Natural convection in a spherical container with cooling at the center was numerically simulated using the Lockheed-developed General Interpolants Method (GIM) numerical fluid dynamic computer program. The numerical analysis was simplified by assuming axisymmetric flow in the spherical container, with the symmetry axis being a sphere diagonal parallel to the gravity vector. This axisymmetric spherical geometry was intended as an idealization of the proposed Lal/Kroes growing experiments to be performed on board Spacelab. Results were obtained for a range of Rayleigh numbers from 25 to 10,000. For a temperature difference of 10 C from the cooling sting at the center to the container surface, and a gravitional loading of 0.000001 g a computed maximum fluid velocity of about 2.4 x 0.00001 cm/sec was reached after about 250 sec. The computed velocities were found to be approximately proportional to the Rayleigh number over the range of Rayleigh numbers investigated.

  17. Dynamic Chest Image Analysis: Model-Based Perfusion Analysis in Dynamic Pulmonary Imaging

    NASA Astrophysics Data System (ADS)

    Liang, Jianming; Järvi, Timo; Kiuru, Aaro; Kormano, Martti; Svedström, Erkki

    2003-12-01

    The "Dynamic Chest Image Analysis" project aims to develop model-based computer analysis and visualization methods for showing focal and general abnormalities of lung ventilation and perfusion based on a sequence of digital chest fluoroscopy frames collected with the dynamic pulmonary imaging technique. We have proposed and evaluated a multiresolutional method with an explicit ventilation model for ventilation analysis. This paper presents a new model-based method for pulmonary perfusion analysis. According to perfusion properties, we first devise a novel mathematical function to form a perfusion model. A simple yet accurate approach is further introduced to extract cardiac systolic and diastolic phases from the heart, so that this cardiac information may be utilized to accelerate the perfusion analysis and improve its sensitivity in detecting pulmonary perfusion abnormalities. This makes perfusion analysis not only fast but also robust in computation; consequently, perfusion analysis becomes computationally feasible without using contrast media. Our clinical case studies with 52 patients show that this technique is effective for pulmonary embolism even without using contrast media, demonstrating consistent correlations with computed tomography (CT) and nuclear medicine (NM) studies. This fluoroscopical examination takes only about 2 seconds for perfusion study with only low radiation dose to patient, involving no preparation, no radioactive isotopes, and no contrast media.

  18. [UO2(NH3)5]Br2·NH3: synthesis, crystal structure, and speciation in liquid ammonia solution by first-principles molecular dynamics simulations.

    PubMed

    Woidy, Patrick; Bühl, Michael; Kraus, Florian

    2015-04-28

    Pentaammine dioxido uranium(VI) dibromide ammonia (1/1), [UO2(NH3)5]Br2·NH3, was synthesized in the form of yellow crystals by the reaction of uranyl bromide, UO2Br2, with dry liquid ammonia. The compound crystallizes orthorhombic in space group Cmcm and is isotypic to [UO2(NH3)5]Cl2·NH3 with a = 13.2499(2), b = 10.5536(1), c = 8.9126(1) Å, V = 1246.29(3) Å(3) and Z = 4 at 123 K. The UO2(2+) cation is coordinated by five ammine ligands and the coordination polyhedron can be best described as pentagonal bipyramid. Car-Parrinello molecular dynamics simulations are reported for [UO2(NH3)5](2+) in the gas phase and in liquid NH3 solution (using the BLYP density functional). According to free-energy simulations, solvation by ammonia has only a small effect on the uranyl-NH3 bond strength. PMID:25797497

  19. PM 2.5 ORGANIC SPECIATION INTERCOMPARISON RESULTS

    EPA Science Inventory

    This abstract describes a poster on results to a laboratory intercomparison of organic aerosol speciation analysis to be presented at the 2006 International Aerosol Conference sponsored by the American Association for Aerosol Research in St. Paul, Minnesota on September 10-15. T...

  20. Sequential photocatalyst-assisted digestion and vapor generation device coupled with anion exchange chromatography and inductively coupled plasma mass spectrometry for speciation analysis of selenium species in biological samples.

    PubMed

    Tsai, Yun-ni; Lin, Cheng-hsing; Hsu, I-hsiang; Sun, Yuh-chang

    2014-01-01

    We have developed an on-line sequential photocatalyst-assisted digestion and vaporization device (SPADVD), which operates through the nano-TiO2-catalyzed photo-oxidation and reduction of selenium (Se) species, for coupling between anion exchange chromatography (LC) and inductively coupled plasma mass spectrometry (ICP-MS) systems to provide a simple and sensitive hyphenated method for the speciation analysis of Se species without the need for conventional chemical digestion and vaporization techniques. Because our proposed on-line SPADVD allows both organic and inorganic Se species in the column effluent to be converted on-line into volatile Se products, which are then measured directly through ICP-MS, the complexity of the procedure and the probability of contamination arising from the use of additional chemicals are both low. Under the optimized conditions for SPADVD - using 1g of nano-TiO2 per liter, at pH 3, and illuminating for 80 s - we found that Se(IV), Se(VI), and selenomethionine (SeMet) were all converted quantitatively into volatile Se products. In addition, because the digestion and vaporization efficiencies of all the tested selenicals were improved when using our proposed on-line LC/SPADVD/ICP-MS system, the detection limits for Se(IV), Se(VI), and SeMet were all in the nanogram-per-liter range (based on 3σ). A series of validation experiments - analysis of neat and spiked extracted samples - indicated that our proposed methods could be applied satisfactorily to the speciation analysis of organic and inorganic Se species in the extracts of Se-enriched supplements. PMID:24331052

  1. Dynamic modelling and analysis of space webs

    NASA Astrophysics Data System (ADS)

    Yu, Yang; Baoyin, HeXi; Li, JunFeng

    2011-04-01

    Future space missions demand operations on large flexible structures, for example, space webs, the lightweight cable nets deployable in space, which can serve as platforms for very large structures or be used to capture orbital objects. The interest in research on space webs is likely to increase in the future with the development of promising applications such as Furoshiki sat-ellite of JAXA, Robotic Geostationary Orbit Restorer (ROGER) of ESA and Grapple, Retrieve And Secure Payload (GRASP) of NASA. Unlike high-tensioned nets in civil engineering, space webs may be low-tensioned or tensionless, and extremely flexible, owing to the microgravity in the orbit and the lack of support components, which may cause computational difficulties. Mathematical models are necessary in the analysis of space webs, especially in the conceptual design and evaluation for prototypes. A full three-dimensional finite element (FE) model was developed in this work. Trivial truss elements were adopted to reduce the computational complexity. Considering cable is a compression-free material and its tensile stiffness is also variable, we introduced the cable material constitutive relationship to work out an accurate and feasible model for prototype analysis and design. In the static analysis, the stress distribution and global deformation of the webs were discussed to get access to the knowledge of strength of webs with different types of meshes. In the dynamic analysis, special attention was paid to the impact problem. The max stress and global deformation were investigated. The simulation results indicate the interesting phenomenon which may be worth further research.

  2. PASSENGER CAR HYDROCARBON EMISSIONS SPECIATION

    EPA Science Inventory

    Emission factors for over 60 individual hydrocarbon compounds were determined for four passenger cars. The cars included a 1963 Chevrolet, a 1977 Mustang, and 1978 Monarch, and 1979 LTD II. The speciation data is reported for both tailpipe and evaporative emissions. The tailpipe ...

  3. Passivhaus: indoor comfort and energy dynamic analysis.

    NASA Astrophysics Data System (ADS)

    Guida, Antonella; Pagliuca, Antonello; Cardinale, Nicola; Rospi, Gianluca

    2013-04-01

    The research aims to verify the energy performance as well as the indoor comfort of an energy class A+ building, built so that the sum of the heat passive contributions of solar radiation, transmitted through the windows, and the heat generated inside the building, are adeguate to compensate for the envelope loss during the cold season. The building, located in Emilia Romagna (Italy), was built using a wooden structure, an envelope realized using a pinewood sandwich panels (transmittance U = 0.250 W/m2K) and, inside, a wool flax insulation layer and thermal window frame with low-emissivity glass (U = 0524 W/m2K). The building design and construction process has followed the guidelines set by "CasaClima". The building has been modeled in the code of dynamic calculation "Energy Plus" by the Design Builder application and divided it into homogenous thermal zones, characterized by winter indoor temperature set at 20 ° (+ / - 1 °) and summer indoor temperature set at 26 ° (+ / - 1 °). It has modeled: the envelope, as described above, the "free" heat contributions, the air conditioning system, the Mechanical Ventilation system as well as home automation solutions. The air conditioning system is an heat pump, able to guarantee an optimization of energy consumption (in fact, it uses the "free" heat offered by the external environment for conditioning indoor environment). As regards the air recirculation system, it has been used a mechanical ventilation system with internal heat cross-flow exchanger, with an efficiency equal to 50%. The domotic solutions, instead, regard a system for the control of windows external screening using reeds, adjustable as a function of incident solar radiation and a lighting management system adjusted automatically using a dimmer. A so realized building meets the requirement imposed from Italian standard UNI/TS 11300 1, UNI/TS 11300 2 and UNI/TS 11300 3. The analysis was performed according to two different configurations: in "spontaneous

  4. Fusion metrics for dynamic situation analysis

    NASA Astrophysics Data System (ADS)

    Blasch, Erik P.; Pribilski, Mike; Daughtery, Bryan; Roscoe, Brian; Gunsett, Josh

    2004-08-01

    To design information fusion systems, it is important to develop metrics as part of a test and evaluation strategy. In many cases, fusion systems are designed to (1) meet a specific set of user information needs (IN), (2) continuously validate information pedigree and updates, and (3) maintain this performance under changing conditions. A fusion system"s performance is evaluated in many ways. However, developing a consistent set of metrics is important for standardization. For example, many track and identification metrics have been proposed for fusion analysis. To evaluate a complete fusion system performance, level 4 sensor management and level 5 user refinement metrics need to be developed simultaneously to determine whether or not the fusion system is meeting information needs. To describe fusion performance, the fusion community needs to agree on a minimum set of metrics for user assessment and algorithm comparison. We suggest that such a minimum set should include feasible metrics of accuracy, confidence, throughput, timeliness, and cost. These metrics can be computed as confidence (probability), accuracy (error), timeliness (delay), throughput (amount) and cost (dollars). In this paper, we explore an aggregate set of metrics for fusion evaluation and demonstrate with information need metrics for dynamic situation analysis.

  5. Questions concerning environmental mobility of arsenic: needs for a chemical data base and means for speciation of trace organoarsenicals.

    PubMed

    Brinckman, F E; Parris, G E; Blair, W R; Jewett, K L; Iverson, W P; Bellama, J M

    1977-08-01

    Biomethylation of metals, including arsenic, apparently occurs as a global process. Health control strategies therefore depend on accurate analysis of arsenic's environmental mobility. Determining to what extent biotransformations occur and how resultant organometal(loids) are sequestered in food chains requires sophistication beyond present-day total element determinations. Rather, active molecular forms of arsenic must be speciated for each environmental compartment, and it is necessary to quantify the dynamics of arsenic's mobility. Thus, new chemical facts are needed yielding rates of methylation or demethylation of arsenic; partition coefficients of organoarsenicals between air, water, and organic phases; and arsenic redox chemistry in polar media. NBS research in this context is reviewed with examples of recent results emphasizing speciation methodology. Topic areas discussed are: the nature of aquated methylarsenic species (NMR and laser-Raman spectroscopy); transport of methylarsenicals from aqueous media (gas chromatography-graphic furnace AA detection applied to metabolic Me3As formation); and speciation of involatile organoarsenicals in aqueous media (demonstration of HPLC utilizing element-specific AA detection and appraisal of electrochemical detectors). PMID:908286

  6. Two numerical models for landslide dynamic analysis

    NASA Astrophysics Data System (ADS)

    Hungr, Oldrich; McDougall, Scott

    2009-05-01

    Two microcomputer-based numerical models (Dynamic ANalysis (DAN) and three-dimensional model DAN (DAN3D)) have been developed and extensively used for analysis of landslide runout, specifically for the purposes of practical landslide hazard and risk assessment. The theoretical basis of both models is a system of depth-averaged governing equations derived from the principles of continuum mechanics. Original features developed specifically during this work include: an open rheological kernel; explicit use of tangential strain to determine the tangential stress state within the flowing sheet, which is both more realistic and beneficial to the stability of the model; orientation of principal tangential stresses parallel with the direction of motion; inclusion of the centripetal forces corresponding to the true curvature of the path in the motion direction and; the use of very simple and highly efficient free surface interpolation methods. Both models yield similar results when applied to the same sets of input data. Both algorithms are designed to work within the semi-empirical framework of the "equivalent fluid" approach. This approach requires selection of material rheology and calibration of input parameters through back-analysis of real events. Although approximate, it facilitates simple and efficient operation while accounting for the most important characteristics of extremely rapid landslides. The two models have been verified against several controlled laboratory experiments with known physical basis. A large number of back-analyses of real landslides of various types have also been carried out. One example is presented. Calibration patterns are emerging, which give a promise of predictive capability.

  7. NGC1300 dynamics - III. Orbital analysis

    NASA Astrophysics Data System (ADS)

    Patsis, P. A.; Kalapotharakos, C.; Grosbøl, P.

    2010-10-01

    We present the orbital analysis of four response models that succeed in reproducing morphological features of NGC1300. Two of them assume a planar (2D) geometry with Ωp = 22 and 16kms-1kpc-1, respectively. The two others assume a cylindrical (thick) disc and rotate with the same pattern speeds as the 2D models. These response models reproduce most successfully main morphological features of NGC1300 among a large number of models, as became evident in a previous study. Our main result is the discovery of three new dynamical mechanisms that can support structures in a barred spiral grand design system. These mechanisms are presented in characteristic cases, where these dynamical phenomena take place. They refer first to the support of a strong bar, of ansae type, almost solely by chaotic orbits, then to the support of spirals by chaotic orbits that for a certain number of pattern revolutions follow an n:1 (n = 7,8) morphology, and finally to the support of spiral arms by a combination of orbits trapped around L4, 5 and sticky chaotic orbits with the same Jacobi constant. We have encountered these dynamical phenomena in a large fraction of the cases we studied as we varied the parameters of our general models, without forcing in some way their appearance. This suggests that they could be responsible for the observed morphologies of many barred spiral galaxies. Comparing our response models among themselves we find that the NGC1300 morphology is best described by a thick-disc model for the bar region and a 2D disc model for the spirals, with both components rotating with the same pattern speed Ωp = 16km s-1kpc-1. In such a case, the whole structure is included inside the corotation of the system. The bar is supported mainly by regular orbits, while the spirals are supported by chaotic orbits. Based on observations collected at the European Southern Observatory, Chile: programme ESO 69.A-0021. E-mail: patsis@academyofathens.gr (PAP); ckalapot@phys.uoa.gr (CK

  8. Simultaneous speciation analysis of inorganic arsenic, chromium and selenium in environmental waters by 3-(2-aminoethylamino) propyltrimethoxysilane modified multi-wall carbon nanotubes packed microcolumn solid phase extraction and ICP-MS.

    PubMed

    Peng, Hanyong; Zhang, Nan; He, Man; Chen, Beibei; Hu, Bin

    2015-01-01

    Speciation analysis of inorganic arsenic, chromium and selenium in environmental waters is of great significance for the monitoring of environmental pollution. In this work, 3-(2-aminoethylamino) propyltrimethoxysilane (AAPTS) functionalized multi-wall carbon nanotubes (MWCNTs) were synthesized and employed as the adsorbent for simultaneous speciation analysis of inorganic arsenic, chromium and selenium in environmental waters by microcolumn solid-phase extraction (SPE)-inductively coupled plasma mass spectrometry (ICP-MS). It was found that As(V), Cr(VI) and Se(VI) could be selectively adsorbed on the microcolumn packed with AAPTS-MWCNTs adsorbent at pH around 2.2, while As(III), Cr(III) and Se(IV) could not be retained at this pH and passed through the microcolumn directly. Total inorganic arsenic, chromium and selenium was determined after the oxidation of As(III), Cr(III) and Se(IV) to As(V), Cr(VI) and Se(VI) with 10.0 μmol L(-1) KMnO4. The assay of As(III), Cr(III) and Se(IV) was based on subtracting As(V), Cr(VI) and Se(VI) from the total As, Cr and Se, respectively. Under the optimized conditions, the detection limits of 15, 38 and 16 ng L(-1) with the relative standard deviations (RSDs) of 7.4, 2.4 and 6.2% (c=1 µg L(-1), n=7) were obtained for As(V), Cr(VI) and Se(VI), respectively. The developed method was validated by analyzing four Certified Reference Materials, rainwater, Yangtze River and East Lake waters. PMID:25281102

  9. The genomics of an adaptive radiation: insights across the Heliconius speciation continuum.

    PubMed

    Supple, Megan; Papa, Riccardo; Counterman, Brian; McMillan, W Owen

    2014-01-01

    Fueled by new technologies that allow rapid and inexpensive assessment of fine scale individual genomic variation, researchers are making transformational discoveries at the interface between genomes and biological complexity. Here we review genomic research in Heliconius butterflies - a radiation characterized by extraordinary phenotypic diversity in warningly colored wing patterns and composed of a continuum of taxa across the stages of speciation. These characteristics, coupled with a 50-year legacy of ecological and behavioral research, offer exceptional prospects for genomic studies into the nature of adaptive differences and the formation of new species. Research in Heliconius provides clear connections between genotype, phenotype, and fitness of wing color patterns shown to underlie adaptation and speciation. This research is challenging our perceptions about how speciation occurs in the presence of gene flow and the role of hybridization in generating adaptive novelty. With the release of the first Heliconius genome assembly, emerging genomic studies are painting a dynamic picture of the evolving species boundary. As the field of speciation genomics moves beyond describing patterns, towards a more integrated understanding of the process of speciation, groups such as Heliconius, where there is a clear speciation continuum and the traits underlying adaptation and speciation are known, will provide a roadmap for identifying variation crucial in the origins of biodiversity. PMID:24277304

  10. Introducing Dynamic Analysis Using Malthus's Principle of Population.

    ERIC Educational Resources Information Center

    Pingle, Mark

    2003-01-01

    Declares the use of dynamic models is increasing in macroeconomics. Explains how to introduce dynamic models to students whose technical skills are modest or varied. Chooses Malthus's Principle of Population as a natural context for introducing dynamic analysis because it provides a method for reviewing the mathematical tools and theoretical…

  11. Dynamic analysis of news streams: institutional versus environmental effects.

    PubMed

    Dooley, Kevin; Corman, Steven

    2004-07-01

    Many societal phenomena are studied through analysis of their representation in media-related texts, such as news articles. The dynamics of such data reflect the phenomenon's underlying generative mechanism. Media artifacts are assumed to mirror the social activity occurring in the environment, thus observed dynamics are assumed to reflect environmental dynamics. The institutional mechanics of media production also affect the observed dynamics however. In this study we examine the extent to which institutional versus environmental effects explain the observed dynamics of media content, in particular focusing on semi-continuous "news streams". We examine the dynamics of news streams produced by the electronic news organization Reuters, immediately following the events of September 11, 2001. We find that many of the observed dynamics appear institutionally generated. We conclude with methodological suggestions concerning the dynamic analysis of media content. PMID:15233881

  12. Quantum speciation in Aegilops: Molecular cytogenetic evidence from rDNA cluster variability in natural populations

    PubMed Central

    Raskina, Olga; Belyayev, Alexander; Nevo, Eviatar

    2004-01-01

    Data are presented on quantum speciation in the Sitopsis section of the genus Aegilops (Poaceae, Monocotyledones). Two small, peripheral, isolated, wild populations of annual cross-pollinated Ae. speltoides and annual self-pollinated Ae. sharonensis are located 30 m apart on different soil types. Despite the close proximity of the two species and their close relatedness, no mixed groups are known. Comparative molecular cytogenetic analysis based on the intrapopulation variability of rRNA-encoding DNA (rDNA) chromosomal patterns of individual Ae. speltoides geno-types revealed an ongoing dynamic process of permanent chromosomal rearrangements. Chromosomal mutations can arise de novo and can be eliminated. Analysis of the progeny of the investigated genotypes testifies that inheritance of de novo rDNA sites happens frequently. Heterologous recombination and/or transposable elements-mediated rDNA transfer seem to be the mechanisms for observed chromosomal repatterning. Consequently, several modified genomic forms, intermediate between Ae. speltoides and Ae. sharonensis, permanently arise in the studied wild population of Ae. speltoides, which make it possible to recognize Ae. sharonensis as a derivative species of Ae. speltoides, as well as to propose rapidness and canalization of quantum speciation in Sitopsis species. PMID:15466712

  13. Simultaneous Speciation of Arsenic, Selenium, and Chromium by HPLC-ICP-MS

    USGS Publications Warehouse

    Wolf, Ruth E.; Morman, Suzette A.; Morrison, Jean M.; Lamothe, Paul J.

    2008-01-01

    An adaptation of an analytical method developed for chromium speciation has been utilized for the simultaneous determination of As(III), As(V), Se(IV), Se(VI), Cr(III), and Cr(VI) species using high performance liquid chromatography (HPLC) separation with ICP-MS detection. Reduction of interferences for the determination of As, Se, and Cr by ICP-MS is a major consideration for this method. Toward this end, a Dynamic Reaction Cell (DRC) ICP-MS system was used to detect the species eluted from the chromatographic column. A variety of reaction cell gases and conditions may be utilized, and the advantages and limitations of the gases tested to date will be presented and discussed. The separation and detection of the As, Se, and Cr species of interest can be achieved using the same chromatographic conditions in less than 2 minutes by complexing the Cr(III) with EDTA prior to injection on the HPLC column. Practical aspects of simultaneous speciation analysis will be presented and discussed, including issues with HPLC sample vial contamination, standard and sample contamination, species stability, and considerations regarding sample collection and preservation methods. The results of testing to determine the method's robustness to common concomitant element and anion effects will also be discussed. Finally, results will be presented using the method for the analysis of a variety of environmental and geological samples including waters, soil leachates and simulated bio-fluid leachates.

  14. Flexible aircraft dynamic modeling for dynamic analysis and control synthesis

    NASA Technical Reports Server (NTRS)

    Schmidt, David K.

    1989-01-01

    The linearization and simplification of a nonlinear, literal model for flexible aircraft is highlighted. Areas of model fidelity that are critical if the model is to be used for control system synthesis are developed and several simplification techniques that can deliver the necessary model fidelity are discussed. These techniques include both numerical and analytical approaches. An analytical approach, based on first-order sensitivity theory is shown to lead not only to excellent numerical results, but also to closed-form analytical expressions for key system dynamic properties such as the pole/zero factors of the vehicle transfer-function matrix. The analytical results are expressed in terms of vehicle mass properties, vibrational characteristics, and rigid-body and aeroelastic stability derivatives, thus leading to the underlying causes for critical dynamic characteristics.

  15. Engine dynamic analysis with general nonlinear finite element codes

    NASA Technical Reports Server (NTRS)

    Adams, M. L.; Padovan, J.; Fertis, D. G.

    1991-01-01

    A general engine dynamic analysis as a standard design study computational tool is described for the prediction and understanding of complex engine dynamic behavior. Improved definition of engine dynamic response provides valuable information and insights leading to reduced maintenance and overhaul costs on existing engine configurations. Application of advanced engine dynamic simulation methods provides a considerable cost reduction in the development of new engine designs by eliminating some of the trial and error process done with engine hardware development.

  16. DYNAMIC MECHANICAL ANALYSIS CHARACTERIZATION OF GLOVEBOX GLOVES

    SciTech Connect

    Korinko, P.

    2012-02-29

    As part of the characterization of various glovebox glove material from four vendors, the permeability of gas through each type as a function of temperature was determined and a discontinuity in the permeability with temperature was revealed. A series of tests to determine the viscoelastic properties of the glove materials as a function of temperature using Dynamic Mechanical Analysis (DMA) was initiated. The glass transition temperature and the elastic and viscoelastic properties as a function of temperature up to maximum use temperature were determined for each glove material. The glass transition temperatures of the gloves were -60 C for butyl, -30 C for polyurethane, -16 C Hypalon{reg_sign}, - 16 C for Viton{reg_sign}, and -24 C for polyurethane-Hypalon{reg_sign}. The glass transition was too complex for the butyl-Hypalon{reg_sign} and butyl-Viton{reg_sign} composite gloves to be characterized by a single glass transition temperature. All of the glass transition temperatures exceed the vendor projected use temperatures.

  17. A dynamic human motion: coordination analysis.

    PubMed

    Pchelkin, Stepan; Shiriaev, Anton S; Freidovich, Leonid B; Mettin, Uwe; Gusev, Sergei V; Kwon, Woong; Paramonov, Leonid

    2015-02-01

    This article is concerned with the generic structure of the motion coordination system resulting from the application of the method of virtual holonomic constraints (VHCs) to the problem of the generation and robust execution of a dynamic humanlike motion by a humanoid robot. The motion coordination developed using VHCs is based on a motion generator equation, which is a scalar nonlinear differential equation of second order. It can be considered equivalent in function to a central pattern generator in living organisms. The relative time evolution of the degrees of freedom of a humanoid robot during a typical motion are specified by a set of coordination functions that uniquely define the overall pattern of the motion. This is comparable to a hypothesis on the existence of motion patterns in biomechanics. A robust control is derived based on a transverse linearization along the configuration manifold defined by the coordination functions. It is shown that the derived coordination and control architecture possesses excellent robustness properties. The analysis is performed on an example of a real human motion recorded in test experiments. PMID:25158624

  18. Size exclusion chromatography with evaporative light scattering detection as a method for speciation analysis of polydimethylsiloxanes. II. Validation of the method for analysis of pharmaceutical formulations.

    PubMed

    Mojsiewicz-Pieńkowska, Krystyna

    2011-12-01

    The aim of this study was to demonstrate the usefulness of the size exclusion chromatography with evaporative light scattering detection (SEC-ELSD) method in the identification and quantitative analysis of polydimethylsiloxanes (PDMS). The process of validation for the method was conducted, and the values obtained were compared with the acceptance criteria. Particularly important was the conclusion that SEC-ELSD method showed a high specificity for PDMS. PDMS is an organosilicon polymer and for this reason, it does not exist as a concrete chemical species. Depending on the length of the chain, PDMS can be toxic for organism. So far, the SEC-ELSD method has not been applied for the control of pharmaceutical products containing such PDMS as dimeticone or simeticone. The safety of use and effectiveness of such pharmaceutical products relies on the control of their quality. Therefore, the analytical methods and procedures that meet acceptance criteria for qualitative and quantitative analysis of the PDMS should be used. In the case of the analysis of pharmaceutical products, the acceptance criteria are established and recommended by, for example, the Pharmacopoeias, the U.S. Food and Drug Administration (FDA), the International Conference on Harmonisation (ICH) and the World Health Organization (WHO). The progress of knowledge, however, requires the development of new analytical tools which are able to solve incoming problems. In the case of pharmaceutical formulations containing PDMS, which are used not only by adults but also by children, it is necessary to use analytical methods which are characterized by a high specificity. PMID:21840148

  19. MODELING MONOMETHYLMERCURY AND TRIBUTYLTIN SPECIATION WITH EPA'S GEOCHEMICAL SPECIATION MODEL MINTEQA2

    EPA Science Inventory

    Given the complexity of the various, simultaneous (and competing) equilibrium reactions governing the speciation of ionic species in aquatic systems, EPA has developed and distributed the geochemical speciation model MINTEQA2 (Brown and Allison, 1987, Allison et al., 1991; Hydrog...

  20. The analysis of Quadrocopter and Hexacopter dynamics

    NASA Astrophysics Data System (ADS)

    Lepikhin, T. A.

    2016-06-01

    The purpose of this operation is to compare dynamic characteristics of two UAVs. The mathematical models of Quadrocopter and Hexacopter in case of full dynamics are considered. For both UAVs the timeless optimal control synthesis is made. Examples of rotational motion simulation between start and finish positions for Quadrocopter and Hexacopter are presented.

  1. Arsenic Speciation of Terrestrial Invertebrates

    SciTech Connect

    Moriarty, M.M.; Koch, I.; Gordon, R.A.; Reimer, K.J. ); )

    2009-07-01

    The distribution and chemical form (speciation) of arsenic in terrestrial food chains determines both the amount of arsenic available to higher organisms, and the toxicity of this metalloid in affected ecosystems. Invertebrates are part of complex terrestrial food webs. This paper provides arsenic concentrations and arsenic speciation profiles for eight orders of terrestrial invertebrates collected at three historical gold mine sites and one background site in Nova Scotia, Canada. Total arsenic concentrations, determined by inductively coupled plasma mass spectrometry (ICP-MS), were dependent upon the classification of invertebrate. Arsenic species were determined by high-performance liquid chromatography (HPLC) ICP-MS and X-ray absorption spectroscopy (XAS). Invertebrates were found by HPLC ICP-MS to contain predominantly arsenite and arsenate in methanol/water extracts, while XAS revealed that most arsenic is bound to sulfur in vivo. Examination of the spatial distribution of arsenic within an ant tissue highlighted the differences between exogenous and endogenous arsenic, as well as the extent to which arsenic is transformed upon ingestion. Similar arsenic speciation patterns for invertebrate groups were observed across sites. Trace amounts of arsenobetaine and arsenocholine were identified in slugs, ants, and spiders.

  2. Dynamic Analysis of Fuel Cycle Transitioning

    SciTech Connect

    Brent Dixon; Steve Piet; David Shropshire; Gretchen Matthern

    2009-09-01

    This paper examines the time-dependent dynamics of transitioning from a once-through fuel cycle to a closed fuel cycle. The once-through system involves only Light Water Reactors (LWRs) operating on uranium oxide fuel UOX), while the closed cycle includes both LWRs and fast spectrum reactors (FRs) in either a single-tier system or two-tier fuel system. The single-tier system includes full transuranic recycle in FRs while the two-tier system adds one pass of mixed oxide uranium-plutonium (MOX U-Pu) fuel in the LWR. While the analysis primarily focuses on burner fast reactors, transuranic conversion ratios up to 1.0 are assessed and many of the findings apply to any fuel cycle transitioning from a thermal once-through system to a synergistic thermal-fast recycle system. These findings include uranium requirements for a range of nuclear electricity growth rates, the importance of back end fuel cycle facility timing and magnitude, the impact of employing a range of fast reactor conversion ratios, system sensitivity to used fuel cooling time prior to recycle, impacts on a range of waste management indicators, and projected electricity cost ranges for once-through, single-tier and two-tier systems. The study confirmed that significant waste management benefits can be realized as soon as recycling is initiated, but natural uranium savings are minimal in this century. The use of MOX in LWRs decouples the development of recycle facilities from fast reactor fielding, but also significantly delays and limits fast reactor deployment. In all cases, fast reactor deployment was significantly below than predicted by static equilibrium analyses.

  3. A recombination suppressor contributes to ecological speciation in OSTRINIA moths.

    PubMed

    Wadsworth, C B; Li, X; Dopman, E B

    2015-06-01

    Despite unparalleled access to species' genomes in our post-genomic age, we often lack adequate biological explanations for a major hallmark of the speciation process-genetic divergence. In the presence of gene flow, chromosomal rearrangements such as inversions are thought to promote divergence and facilitate speciation by suppressing recombination. Using a combination of genetic crosses, phenotyping of a trait underlying ecological isolation, and population genetic analysis of wild populations, we set out to determine whether evidence supports a role for recombination suppressors during speciation between the Z and E strains of European corn borer moth (Ostrinia nubilalis). Our results are consistent with the presence of an inversion that has contributed to accumulation of ecologically adaptive alleles and genetic differentiation across roughly 20% of the Ostrinia sex chromosome (~4 Mb). Patterns in Ostrinia suggest that chromosomal divergence may involve two separate phases-one driving its transient origin through local adaptation and one determining its stable persistence through differential introgression. As the evolutionary rate of rearrangements in lepidopteran genomes appears to be one of the fastest among eukaryotes, structural mutations may have had a disproportionate role during adaptive divergence and speciation in Ostrinia and in other moths and butterflies. PMID:25626887

  4. A recombination suppressor contributes to ecological speciation in OSTRINIA moths

    PubMed Central

    Wadsworth, C B; Li, X; Dopman, E B

    2015-01-01

    Despite unparalleled access to species' genomes in our post-genomic age, we often lack adequate biological explanations for a major hallmark of the speciation process—genetic divergence. In the presence of gene flow, chromosomal rearrangements such as inversions are thought to promote divergence and facilitate speciation by suppressing recombination. Using a combination of genetic crosses, phenotyping of a trait underlying ecological isolation, and population genetic analysis of wild populations, we set out to determine whether evidence supports a role for recombination suppressors during speciation between the Z and E strains of European corn borer moth (Ostrinia nubilalis). Our results are consistent with the presence of an inversion that has contributed to accumulation of ecologically adaptive alleles and genetic differentiation across roughly 20% of the Ostrinia sex chromosome (~4 Mb). Patterns in Ostrinia suggest that chromosomal divergence may involve two separate phases—one driving its transient origin through local adaptation and one determining its stable persistence through differential introgression. As the evolutionary rate of rearrangements in lepidopteran genomes appears to be one of the fastest among eukaryotes, structural mutations may have had a disproportionate role during adaptive divergence and speciation in Ostrinia and in other moths and butterflies. PMID:25626887

  5. Static and Dynamics of a Pump Impeller with a Balancing Device Part II: Dynamic Analysis

    NASA Astrophysics Data System (ADS)

    Martsinkovsky, V. A.; Zhulyov, A.; Kundera, C.

    2014-08-01

    This paper presents the theoretical study of the system comprising an impeller and a balancing device. It deals with the dynamic analysis of the system, i.e., the axial vibrations of the impeller, and the system stability. The dynamic analysis took into account linearized hydrodynamic forces and moments generated in the longitudinal clearances of the seals of the impeller. The theoretical analysis was supplemented with a numerical example with characteristics determined for a real single-stage centrifugal pump

  6. Visibility graph analysis on heartbeat dynamics of meditation training

    NASA Astrophysics Data System (ADS)

    Jiang, Sen; Bian, Chunhua; Ning, Xinbao; Ma, Qianli D. Y.

    2013-06-01

    We apply the visibility graph analysis to human heartbeat dynamics by constructing the complex networks of heartbeat interval time series and investigating the statistical properties of the network before and during chi and yoga meditation. The experiment results show that visibility graph analysis can reveal the dynamical changes caused by meditation training manifested as regular heartbeat, which is closely related to the adjustment of autonomous neural system, and visibility graph analysis is effective to evaluate the effect of meditation.

  7. Hybridization Reveals the Evolving Genomic Architecture of Speciation

    PubMed Central

    Kronforst, Marcus R.; Hansen, Matthew E.B.; Crawford, Nicholas G.; Gallant, Jason R.; Zhang, Wei; Kulathinal, Rob J.; Kapan, Durrell D.; Mullen, Sean P.

    2014-01-01

    SUMMARY The rate at which genomes diverge during speciation is unknown, as are the physical dynamics of the process. Here, we compare full genome sequences of 32 butterflies, representing five species from a hybridizing Heliconius butterfly community, to examine genome-wide patterns of introgression and infer how divergence evolves during the speciation process. Our analyses reveal that initial divergence is restricted to a small fraction of the genome, largely clustered around known wing-patterning genes. Over time, divergence evolves rapidly, due primarily to the origin of new divergent regions. Furthermore, divergent genomic regions display signatures of both selection and adaptive introgression, demonstrating the link between microevolutionary processes acting within species and the origin of species across macroevolutionary timescales. Our results provide a uniquely comprehensive portrait of the evolving species boundary due to the role that hybridization plays in reducing the background accumulation of divergence at neutral sites. PMID:24183670

  8. Evaluation of a pulsed glow discharge time-of-flight mass spectrometer as a detector for gas chromatography and the influence of the glow discharge source parameters on the information volume in chemical speciation analysis.

    PubMed

    Fliegel, Daniel; Fuhrer, Katrin; Gonin, Marc; Günther, Detlef

    2006-09-01

    The figures of merit of a pulsed glow discharge time-of-flight mass spectrometer (GD-TOFMS) as a detector for gas chromatography (GC) analysis were evaluated. The mass resolution for the GD-TOFMS was determined on FWHM in the high mass range (208Pb+) as high as 5,500. Precision of 400 subsequent analyses was calculated on 63Cu+ to be better than 1% RSD with no significant drift over the time of the analysis. Isotope precision based on the 63Cu+/65Cu+ ratio over 400 analyses was 1.5% RSD. The limits of detection for gaseous analytes (toluene in methanol as solvent) were determined to be as low as several hundred ppb or several hundred pg absolute without using any pre-concentration technique. Furthermore, the different GD source parameters like capillary distance, cathode-anode spacing, and GD source pressure with regards to the accessible elemental, structural, and molecular information were evaluated. It was demonstrated that each of these parameters has severe influence on the ratio of elemental, structural, and parent molecular information in chemical speciation analysis. PMID:16773303

  9. Development of methodology for horizontal axis wind turbine dynamic analysis

    NASA Technical Reports Server (NTRS)

    Dugundji, J.

    1982-01-01

    Horizontal axis wind turbine dynamics were studied. The following findings are summarized: (1) review of the MOSTAS computer programs for dynamic analysis of horizontal axis wind turbines; (2) review of various analysis methods for rotating systems with periodic coefficients; (3) review of structural dynamics analysis tools for large wind turbine; (4) experiments for yaw characteristics of a rotating rotor; (5) development of a finite element model for rotors; (6) development of simple models for aeroelastics; and (7) development of simple models for stability and response of wind turbines on flexible towers.

  10. Dynamic deformation analysis of light-weight mirror

    NASA Astrophysics Data System (ADS)

    Zhang, Yingtao; Cao, Xuedong; Kuang, Long; Yang, Wei

    2012-10-01

    In the process of optical dynamic target work, under the effort of the arm of dynamic target, the mirror needs to do circular motion, additional accelerated motion and uniform motion. The maximum acceleration is 10°/s2 and the maximum velocity is 30°/s. In this paper, we mostly analyze the dynamic deformation of a 600 mm honeycomb light-weight mirror of a certain dynamic target. Using the FEA (finite element analysis) method, first of all, we analyze the deformation of the light-weight mirror induced in gravity at different position; later, the dynamic deformation of light-weight mirror is analyzed in detailed. The analysis results indicate that, when the maximum acceleration is 10°/s2 and the maximum velocity is 30°/s, the centripetal force is 5% of the gravity at the equal mass, and the dynamic deformation of the mirror is 6.1% of the deformation induced by gravity.

  11. Trace element analytical speciation in biological systems: importance, challenges and trends

    NASA Astrophysics Data System (ADS)

    Sanz-Medel, Alfredo

    1998-02-01

    Speciation of trace elements is a relatively new field and it was in toxicology that the relationship between the chemical form of a metal and its harmful effects was first recognized. The present need for chemical speciation information in biochemistry bioinorganic and clinical chemistry is documented in an attempt to justify the present demand for innovative chemical speciation strategies and analytical technologies. The challenge and complexity of speciation is stressed and three different categories of analytical speciation of increasing analytical difficulty are proposed. Analytical strategies developed so far to try to tackle speciation problems (computational approaches, direct species-specific and hybrid techniques) are reviewed and critically assessed for biological materials. It is indisputable these days that in most cases of real-life analytical speciation we have to resort to the development and use of hybrid techniques combining an adequate separation technique for the species physical separation and an element specific detector such as those based in atomic spectrometry. Examples of such strategies, as developed mainly in the author's laboratory and including chromatographic and non-chromatographic type hybrid strategies coupled to flame, plasma and electrothermal vaporization atomic detectors, are discussed in more detail. Finally, in light of the latest trends observed in this new field, the author attempts to cast a forward look into the foreseeable future of analytical speciation research in biological and biomedical sciences. The urgent plea for quality assurance in non-routine analysis and the concept of using complementary analytical techniques and definitive methods to attack the complexity of chemical speciation in biological systems are particularly highlighted.

  12. Potential Flow Analysis of Dynamic Ground Effect

    NASA Technical Reports Server (NTRS)

    Feifel, W. M.

    1999-01-01

    Interpretation of some flight test data suggests the presence of a 'dynamic ground effect'. The lift of an aircraft approaching the ground depends on the rate of descent and is lower than the aircraft steady state lift at a same height above the ground. Such a lift deficiency under dynamic conditions could have a serious impact on the overall aircraft layout. For example, the increased pitch angle needed to compensate for the temporary loss in lift would reduce the tail strike margin or require an increase in landing gear length. Under HSR2 an effort is under way to clarify the dynamic ground effect issue using a multi-pronged approach. A dynamic ground effect test has been run in the NASA Langley 14x22 ft wind tunnel. Northup-Grumman is conducting time accurate CFD (Computational Fluid Dynamics) Euler analyses on the National Aerodynamic Simulator facility. Boeing has been using linear potential flow methodology which are thought to provide much needed insight in, physics of this very complex problem. The present report summarizes the results of these potential flow studies.

  13. Redox speciation analysis of dissolved iron in estuarine and coastal waters with on-line solid phase extraction and graphite furnace atomic absorption spectrometry detection.

    PubMed

    Chen, Yaojin; Feng, Sichao; Huang, Yongming; Yuan, Dongxing

    2015-05-01

    An automatic on-line solid phase extraction (SPE) system employing the flow injection (FI) technique directly coupled to a graphite furnace atomic absorption spectrometer (GFAAS) was established for speciation and determination of dissolved iron in estuarine and coastal waters. Fe(II) was mixed with ferrozine solution in a sample stream to form the Fe(II)-ferrozine complex which was extracted onto a C18 SPE cartridge, eluted with eluent and detected with GFAAS. In a parallel flow channel, Fe(III) was reduced to Fe(II) with ascorbic acid and then detected in the same way as Fe(II). The home-made interface between FI-SPE and GFAAS efficiently realized the sample introduction to the furnace in a semi-automated way. Parameters of the FI-SPE system and graphite furnace program were optimized based on a univariate experimental design and an orthogonal array design. The salinity effect on the method sensitivity was investigated. The proposed method provided a detection limit of 1.38 nmol L(-1) for Fe(II) and 1.87 nmol L(-1) for Fe(II+III). With variation of the sample loading volume, a broadened determination range of 2.5-200 nmol L(-1) iron could be obtained. The proposed method was successfully applied to analyze iron species in samples collected from the Jiulongjiang Estuary, Fujian, China. With the 2-cartridge FI-SPE system developed, on-line simultaneous determination of Fe species with GFAAS was achieved for the first time. PMID:25770602

  14. Evolutionary history of the four-spotted megrim ( Lepidorhombus boscii) and speciation time within the genus based on mitochondrial genes analysis

    NASA Astrophysics Data System (ADS)

    Campo, Daniel; Garcia-Vazquez, Eva

    2010-10-01

    The evolutionary history and geographic distribution of North-Atlantic and Mediterranean marine taxa has been largely affected by past geological and climatic events, like the Messinian salinity crisis, the opening of the Strait of Gibraltar and the Quaternary glacial cycles. The four-spotted megrim Lepidorhombus boscii is a demersal flatfish of the family Scophthalmidae (Pleuronectiformes), distributed in the Northeast Atlantic and the Mediterranean Sea. During its larval development it is planktonic, being passively drifted by marine currents, while adults are more or less sedentary living near the sea bottom. In order to investigate whether past geological and climatic events have influenced the evolutionary and demographic history of L.boscii, we analyzed a fragment of the highly variable mitochondrial control region in 163 individuals from different North-Atlantic areas and from the Mediterranean Sea. Contemporary processes of moderate gene flow, partially restricted by isolation by distance, as well as recent paleoecological events like the last Pleistocene glaciation, seem to play key roles in shaping the current phylogeographic pattern of the four-spotted megrim. On the other hand, we also analyzed 94 individuals from different North-Atlantic areas of its congeneric species L. whiffiagonis in order to compare genetic variation patterns within this genus. Finally, we used a fragment of the protein-coding mitochondrial gene cytochrome c oxidase I to estimate the time of speciation in megrims. Results suggest that divergence between the two species likely took place 5.3 MYA, which can be correlated with the end of the Messinian salinity crisis.

  15. Origin and speciation of haplochromine fishes in East African crater lakes investigated by the analysis of their mtDNA, Mhc genes, and SINEs.

    PubMed

    Sato, Akie; Takezaki, Naoko; Tichy, Herbert; Figueroa, Felipe; Mayer, Werner E; Klein, Jan

    2003-09-01

    The Western Branch of the East African Great Rift Valley is pocketed with craters of extinct or dormant volcanoes. Many of the craters are filled with water, and the lakes are inhabited by fishes. The objective of the present study was to determine the amount and nature of genetic variation in haplochromine fishes inhabiting two of these crater lakes, Lake Lutoto and Lake Nshere, and to use this information to infer the origin and history of the two populations. To this end, sequences of mitochondrial (mt) DNA control region, exon 2 of major histocompatibility complex (Mhc) class II B genes, and short interspersed elements (SINEs) were analyzed. The results indicate that the Lake Nshere and Lake Lutoto fishes originated from different but related large founding populations derived from the Kazinga Channel, which connects Lake Edward and Lake George. Some of the genetic polymorphism that existed in the ancestral populations was lost in the populations of the two lakes. The polymorphism that has been retained has persisted for some 50000 generations (years). During this time, new mutations arose and became fixed in each of the two populations in the mtDNA, giving rise to sets of diagnostic substitutions. Each population evolved in isolation after the colonization of the lakes less than 50000 years ago. There appears to be no population structure within the crater lake fishes, and their present effective population sizes are in the order of 104 to 105 individuals. Comparisons with the endemic haplochromine species of Lake Victoria reveal interesting parallels, as well as differences, which may help to understand the nature of the speciation process. PMID:12777512

  16. Capabilities of mixed-mode liquid chromatography coupled to inductively coupled plasma mass spectrometry for the simultaneous speciation analysis of inorganic and organically-bound selenium.

    PubMed

    Peachey, Emma; Cook, Ken; Castles, Adrian; Hopley, Christopher; Goenaga-Infante, Heidi

    2009-10-16

    This work investigates for the first time the potential of mixed-mode (anion-exchange with reversed-phase) high performance liquid chromatography coupled to inductively coupled plasma mass spectrometry (ICP-MS) for the simultaneous retention and selective separation of a range of inorganic and organically-bound selenium (Se) species. Baseline separation and detection of selenocystine (SeCys(2)), Se-methyl-selenocysteine (SeMC), selenomethionine (SeMet), methylseleninic acid (MSA), selenite, gamma-glutamyl-methyl-selenocysteine (gamma-glutamyl-SeMC), and selenate in a Se standard mixture by mixed-mode HPLC-ICP-MS was achieved by switching between two citrate mobile phases of different pH and ionic strength within a single chromatographic run of 20 min. Limits of detection obtained for these Se species ranged from 80 ng kg(-1) (for SeMC) to 123 ng kg(-1) (for selenate). Using this approach as developed for selenium speciation, an adequate separation of inorganic and organic As compounds was also achieved. These include arsenite, arsenate, arsenobetaine (AsB) and dimethylarsenic acid (DMA), which may coexist with Se species in biological samples. Application of the newly proposed methodology to the investigation of the elemental species distribution in watercress (used as the model sample) after enzymatic hydrolysis or leaching in water by accelerated solvent extraction (ASE) was addressed. Only SeMet, SeMC and selenate could be tentatively identified in watercress extracts by mixed-mode HPLC-ICP-MS and retention time matching with standards. Recoveries (n=3) of these Se species from samples spiked with standards averaged 102% (for SeMC), 94.9% (for SeMet) and 98.3% (for selenate). Verification of the presence of SeMet and SeMC in an enzymatic watercress extract was achieved by on-line HPLC-ESI MS/MS in selected reaction monitoring (SRM) mode. PMID:19758595

  17. Nonlinear dynamic analysis for elastic robotic arms

    NASA Astrophysics Data System (ADS)

    Korayem, M. H.; Rahimi, H. N.

    2011-06-01

    The aim of the paper is to analyze the nonlinear dynamics of robotic arms with elastic links and joints. The main contribution of the paper is the comparative assessment of assumed modes and finite element methods as more convenient approaches for computing the nonlinear dynamic of robotic systems. Numerical simulations comprising both methods are carried out and results are discussed. Hence, advantages and disadvantages of each method are illustrated. Then, adding the joint flexibility to the system is dealt with and the obtained model is demonstrated. Finally, a brief description of the optimal motion generation is presented and the simulation is carried out to investigate the role of robot dynamic modeling in the control of robots.

  18. Aeroservoelastic and Flight Dynamics Analysis Using Computational Fluid Dynamics

    NASA Technical Reports Server (NTRS)

    Arena, Andrew S., Jr.

    1999-01-01

    This document in large part is based on the Masters Thesis of Cole Stephens. The document encompasses a variety of technical and practical issues involved when using the STARS codes for Aeroservoelastic analysis of vehicles. The document covers in great detail a number of technical issues and step-by-step details involved in the simulation of a system where aerodynamics, structures and controls are tightly coupled. Comparisons are made to a benchmark experimental program conducted at NASA Langley. One of the significant advantages of the methodology detailed is that as a result of the technique used to accelerate the CFD-based simulation, a systems model is produced which is very useful for developing the control law strategy, and subsequent high-speed simulations.

  19. Dynamic fuzzy hierarchy analysis for evaluation of professionalization degree

    NASA Astrophysics Data System (ADS)

    Jin, Lin; Min, Luo; Ma, Jingxi

    2016-06-01

    This paper presents the model of dynamic fuzzy hierarchy analysis for evaluation of professionalization degree, as a combination of the dynamic fuzzy theory and the AHP, which can show the changes and trends of the value of each index of professionalization.

  20. Overview af MSFC's Applied Fluid Dynamics Analysis Group Activities

    NASA Technical Reports Server (NTRS)

    Garcia, Roberto; Griffin, Lisa; Williams, Robert

    2004-01-01

    This paper presents viewgraphs on NASA Marshall Space Flight Center's Applied Fluid Dynamics Analysis Group Activities. The topics include: 1) Status of programs at MSFC; 2) Fluid Mechanics at MSFC; 3) Relevant Fluid Dynamics Activities at MSFC; and 4) Shuttle Return to Flight.

  1. Computer aided analysis and optimization of mechanical system dynamics

    NASA Technical Reports Server (NTRS)

    Haug, E. J.

    1984-01-01

    The purpose is to outline a computational approach to spatial dynamics of mechanical systems that substantially enlarges the scope of consideration to include flexible bodies, feedback control, hydraulics, and related interdisciplinary effects. Design sensitivity analysis and optimization is the ultimate goal. The approach to computer generation and solution of the system dynamic equations and graphical methods for creating animations as output is outlined.

  2. Dynamical scaling analysis of plant callus growth

    NASA Astrophysics Data System (ADS)

    Galeano, J.; Buceta, J.; Juarez, K.; Pumariño, B.; de la Torre, J.; Iriondo, J. M.

    2003-07-01

    We present experimental results for the dynamical scaling properties of the development of plant calli. We have assayed two different species of plant calli, Brassica oleracea and Brassica rapa, under different growth conditions, and show that their dynamical scalings share a universality class. From a theoretical point of view, we introduce a scaling hypothesis for systems whose size evolves in time. We expect our work to be relevant for the understanding and characterization of other systems that undergo growth due to cell division and differentiation, such as, for example, tumor development.

  3. Dynamic analysis of mechanisms by finite elements

    SciTech Connect

    Botsali, F.M.; Uenuevar, A.

    1996-11-01

    The need to increase productivity in order to decrease manufacturing costs lead to an increase in the working speeds of machines and mechanical systems used in manufacturing. A method is presented for investigating the dynamics of mechanisms with elastic links. Finite element method is used in the formulation of the dynamic problem. Modal transformation is used in order to reduce the number of equations of motion. Using the presented technique, elastic and rigid body motions of mechanism links are solved simultaneously. The presented method may be applied to spatial and open loop mechanisms including robot manipulators as well.

  4. Mercury speciation in floodplain soils and sediments along a contaminated river transect

    SciTech Connect

    Wallschlaeger, D.; Desai, M.V.M.; Spengler, M.; Wilken, R.D.

    1998-09-01

    A novel mercury-specific sequential extraction procedure (SEP) for the assessment of mercury (Hg) speciation in soils and sediments, with emphasis on studying the interaction between Hg and organic matter (OM), was developed and tested. It was applied to determine Hg speciation in floodplain topsoils and surface sediments along the Hg-contaminated part of the river Elbe, and to simultaneously derive some information on the (re)mobilization potentials for Hg from these matrices. The majority of the total Hg in the ecosystem today is bound in the floodplains, which also still geographically reflect the historic emission record. Most of the Hg in both matrices is bound strongly to OM, suggesting low availability. However, distinct differences between Hg speciation in the floodplain soils and sediments were also discovered. Mercury deposited in the floodplains shows speciation patterns that indicate stronger fixation compared with Hg in the sediments. This difference is attributed to the association of Hg with larger quantities of OM, which presumably also has higher molecular weight (MW). By comparison, Hg in the sediments was distributed among weaker binding forms, which are more likely to liberate Hg. Particularly, sediments showed a total lack of sulfidic binding forms for Hg. Pronounced geographical trends were detected in the Hg speciation along the river transect, with a general downstream shift from weaker to stronger binding forms, probably due to increased association with OM. These studies indicate that Hg speciation in riverine ecosystems is dynamic and reflects the chemical mechanisms underlying (bio) geochemical processes like distribution and transport.

  5. Metal speciation and toxicity of Tamar Estuary water to larvae of the Pacific oyster, Crassostrea gigas.

    PubMed

    Money, Cathryn; Braungardt, Charlotte B; Jha, Awadhesh N; Worsfold, Paul J; Achterberg, Eric P

    2011-07-01

    As part of the PREDICT Tamar Workshop, the toxicity of estuarine waters in the Tamar Estuary (southwest England) was assessed by integration of metal speciation determination with bioassays. High temporal resolution metal speciation analysis was undertaken in situ by deployment of a Voltammetric In situ Profiling (VIP) system. The VIP detects Cd (cadmium), Pb (lead) and Cu (copper) species smaller than 4 nm in size and this fraction is termed 'dynamic' and considered biologically available. Cadmium was mainly present in the dynamic form and constituted between 56% and 100% of the total dissolved concentration, which was determined subsequently in the laboratory in filtered discrete samples. In contrast, the dynamic Pb and Cu fractions were less important, with a much larger proportion of these metals associated with organic ligands and/or colloids (45-90% Pb and 46-85% Cu), which probably reduced the toxicological impact of these elements in this system. Static toxicity tests, based on the response of Crassostrea gigas larva exposed to discrete water samples showed a high level of toxicity (up to 100% abnormal development) at two stations in the Tamar, particularly during periods of the tidal cycle when the influence of more pristine coastal water was at its lowest. Competitive ligand-exchange Cu titrations showed that natural organic ligands reduced the free cupric ion concentration to levels that were unlikely to have been the sole cause of the observed toxicity. Nonetheless, it is probable that the combined effect of the metals determined in this work contributed significantly to the bioassay response. PMID:21704365

  6. SPECIATION OF ELEMENTS IN INCINERATION RESIDUES

    EPA Science Inventory

    Knowledge as to the speciation of elements in incineration residues is important for the successful management and utilization of the residues and for modelling and predicting their leaching behavior. s part of a larger research effort on speciation in combustion residues, ESP as...

  7. Rapid speciation and chromosomal evolution in mammals.

    PubMed Central

    Bush, G L; Case, S M; Wilson, A C; Patton, J L

    1977-01-01

    To test the hypothesis that population subdivision into small demes promotes both rapid speciation and evolutionary changes in gene arrangement by inbreeding and drift, we estimated rates of speciation and rates of chromosomal evolution in 225 genera of vertebrates. Rates of speciation were estimated by considering the number of living species in each genus and the fossil record of each genus as well as information about extinction rates. Speciation rate was strongly correlated with rate of chromosomal evolution and average rates of speciation in lower vertebrate genera were one-fifth those in mammalian genera. Genera with high karyotypic diversity and rapid speciation rates may generally have small effective population size (Ne), whereas large Ne values may be associated with karyotypically uniform genera and slow rates of speciation. Speciation and chromosomal evolution seem fastest in those genera with species organized into clans or harems (e.g., some primates and horses) or with limited adult vagility and juvenile dispersal, patchy distribution, and strong individual territoriality (e.g., some rodents). This is consistent with the above hypothesis regarding the evolutionary importance of demes. PMID:269445

  8. Speciation in fungal and oomycete plant pathogens

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The process of speciation by definition involves evolution of one or more reproductive isolating mechanisms that split a single species into two that can no longer interbreed. Determination of which processes are responsible for speciation is important yet challenging. Several studies have proposed ...

  9. High-performance liquid chromatography-ultrasonic nebulizer high-power nitrogen microwave-induced plasma mass spectrometry, real-time on-line coupling for selenium speciation analysis.

    PubMed

    Chatterjee, Amit; Shibata, Yasuyuki; Tao, Hiroaki; Tanaka, Atsushi; Morita, Masatoshi

    2004-07-01

    The coupling of a high-power nitrogen (N2) microwave-induced plasma (MIP) mass spectrometry--(MS) (1.3 kW) with high-performance liquid chromatography, connected with concentric nebulizer (CN), ultrasonic nebulizer (USN) and a hydride generation (HG) systems, for the optimization and determination of selenium compounds, has been carried out. The MIP-MS system fulfils the ideal requirement being an on-line real-time chromatographic detector for Se speciation analysis. Interchanging of MIP-MS system fabricated nebulizer (concentric) with an ultrasonic nebulizer increases about 3.4-12 (peak height) and 6.5-10 (peak area) times ion signals for the selenium compounds. The detection limits for selenate, selenite, trimethylselenonium ion (TmSe), selenomethionine (Semet) and selenoethionine (Seet) (in Milli-Q-water) obtained with the optimized HPLC-USN-N2MIP-MS system are 0.11, 0.14, 0.09, 0.14 and 0.10 microg L(-1), respectively, about 12-48 times lower than the HPLC-CN-MIP-MS and 1.5-4.4 (peak height) times lower compared to the HPLC-CN-inductively coupled plasma (ICP)-MS coupling. Considering peak area, the repeatability (R.S.D. for three successive analyses) and intermediate precision (R.S.D. for three successive analyses performed on three different days), achieved for five Se compounds are 0.8-5.6, and 1.1-5.9%, comparable with the HPLC-CN-ICP-MS, HPLC-HG-MIP-MS and HPLC-CN-MIP-MS systems. The combined HPLC-USN-N2MIP-MS has been adequately applied for the determination of Se compounds in certified National Institute for Environmental studies human urine CRM No. 18. The results reasonably agree with the HPLC-CN-ICP-MS values. This encouraging combination may be an alternative ion source of mass spectrometry for coming generation in regard to the selenium speciation analysis. PMID:15296393

  10. Theoretical and software considerations for nonlinear dynamic analysis

    NASA Technical Reports Server (NTRS)

    Schmidt, R. J.; Dodds, R. H., Jr.

    1983-01-01

    In the finite element method for structural analysis, it is generally necessary to discretize the structural model into a very large number of elements to accurately evaluate displacements, strains, and stresses. As the complexity of the model increases, the number of degrees of freedom can easily exceed the capacity of present-day software system. Improvements of structural analysis software including more efficient use of existing hardware and improved structural modeling techniques are discussed. One modeling technique that is used successfully in static linear and nonlinear analysis is multilevel substructuring. This research extends the use of multilevel substructure modeling to include dynamic analysis and defines the requirements for a general purpose software system capable of efficient nonlinear dynamic analysis. The multilevel substructuring technique is presented, the analytical formulations and computational procedures for dynamic analysis and nonlinear mechanics are reviewed, and an approach to the design and implementation of a general purpose structural software system is presented.

  11. Computer program for flexible rotor dynamics analysis

    NASA Technical Reports Server (NTRS)

    Shen, F. A.

    1974-01-01

    Program analyzes general nonaxisymmetric and nonsynchronous transient and steady-state rotor dynamic performance of bending- and shear-wise flexible rotor-bearing system under various operating conditions. Program can be used as analytical study tool for general transient spin-speed and/or non-axisymmetric rotor motion.

  12. Using Dynamic Sensitivity Analysis to Assess Testability

    NASA Technical Reports Server (NTRS)

    Voas, Jeffrey; Morell, Larry; Miller, Keith

    1990-01-01

    This paper discusses sensitivity analysis and its relationship to random black box testing. Sensitivity analysis estimates the impact that a programming fault at a particular location would have on the program's input/output behavior. Locations that are relatively \\"insensitive" to faults can render random black box testing unlikely to uncover programming faults. Therefore, sensitivity analysis gives new insight when interpreting random black box testing results. Although sensitivity analysis is computationally intensive, it requires no oracle and no human intervention.

  13. Speciation and distribution of cadmium and lead in salinized horizons of antrosols

    NASA Astrophysics Data System (ADS)

    Bulgariu, D.; Bulgariu, L.; Astefanei, D.

    2009-04-01

    The utilization of intensive technologies for the vegetable cultivation in glass houses by the administration of high doses of organic fertilizes, the supra-dimensional irrigation and the maintaining of soil at high humidity state, in special in case of vicious drainage have as result the rapid degradation of morphological, chemical and physical characteristics of soils, concretized by: (i) decrease of structural aggregates stability; (ii) more dense packing of soil; (iii) accumulation of easy soluble salts (in special at superior horizons level); (iv) limitation of organic compounds and micro-elements biodisponibility. All these determined a significant reduction of productivity and of exploitation duration of soils from glass houses. These phenomena modified continuously the dynamic of speciation processes and inter-phases distribution, of heavy metals in soils from glass houses, and can determined a non-controlled accumulation of heavy metals, in special as mobile forms with high biodisponibility. Ours studied have been performed using soil profiles drawing from Copou-glass house, Iasi (Romania). Has been followed the modification of distribution for speciation forms of cadmium and lead (two heavy metals with high toxicity degree), between hortic antrosol horizons, and between chemical-mineralogical components of this, with the progressive salinization of superior horizons, in 2007-2008 period. The separation, differentiation and determination of cadmium and lead speciation forms was done by combined solid-liquid sequential extraction (SPE) and extraction in aqueous polymer-inorganic salt two-phase systems (ABS) procedure, presented in some of ours previous studies. After extraction, the total contents of the two heavy metals and fractions from these differential bonded by mineral and organic components of hortic antrosol have been determined by atomic absorption spectrometry. The specific interaction mechanisms of Cd and Pb with organic-mineral components of

  14. Overview of MSFC's Applied Fluid Dynamics Analysis Group Activities

    NASA Technical Reports Server (NTRS)

    Garcia, Roberto; Wang, Tee-See; Griffin, Lisa; Turner, James E. (Technical Monitor)

    2001-01-01

    This document is a presentation graphic which reviews the activities of the Applied Fluid Dynamics Analysis Group at Marshall Space Flight Center (i.e., Code TD64). The work of this group focused on supporting the space transportation programs. The work of the group is in Computational Fluid Dynamic tool development. This development is driven by hardware design needs. The major applications for the design and analysis tools are: turbines, pumps, propulsion-to-airframe integration, and combustion devices.

  15. Overview of MSFC's Applied Fluid Dynamics Analysis Group Activities

    NASA Technical Reports Server (NTRS)

    Garcia, Roberto; Griffin, Lisa; Williams, Robert

    2002-01-01

    This viewgraph report presents an overview of activities and accomplishments of NASA's Marshall Space Flight Center's Applied Fluid Dynamics Analysis Group. Expertise in this group focuses on high-fidelity fluids design and analysis with application to space shuttle propulsion and next generation launch technologies. Topics covered include: computational fluid dynamics research and goals, turbomachinery research and activities, nozzle research and activities, combustion devices, engine systems, MDA development and CFD process improvements.

  16. Dynamic Analysis of Capture Devices for Momentum Exchange with Tethers

    NASA Technical Reports Server (NTRS)

    Canfield, Stephen

    2002-01-01

    One of the significant challenges in developing a momentum exchange / electrodynamic reboost tether system is in the analysis and design of the capture device and its effects on the overall dynamics of the system. The goal of this work is to develop appropriate tether momentum exchange models that can simulate and evaluate the requirements of such a system, and be used to create specifications on the design of a capture device. This report briefly describes dynamic model development, simulation of the momentum exchange process, evaluation of dynamic effects of errors in the momentum exchange process, and the development of guidelines in selecting dynamic properties in the design of a capture device.

  17. Rates of speciation in the fossil record

    NASA Technical Reports Server (NTRS)

    Sepkoski, J. J. Jr; Sepkoski JJ, J. r. (Principal Investigator)

    1998-01-01

    Data from palaeontology and biodiversity suggest that the global biota should produce an average of three new species per year. However, the fossil record shows large variation around this mean. Rates of origination have declined through the Phanerozoic. This appears to have been largely a function of sorting among higher taxa (especially classes), which exhibit characteristic rates of speciation (and extinction) that differ among them by nearly an order of magnitude. Secular decline of origination rates is hardly constant, however; many positive deviations reflect accelerated speciation during rebounds from mass extinctions. There has also been general decline in rates of speciation within major taxa through their histories, although rates have tended to remain higher among members in tropical regions. Finally, pulses of speciation appear sometimes to be associated with climate change, although moderate oscillations of climate do not necessarily promote speciation despite forcing changes in species' geographical ranges.

  18. Turbine blade structural dynamic analysis. [for space shuttle main engine

    NASA Technical Reports Server (NTRS)

    Dickerson, E. O.

    1980-01-01

    The paper presents structural dynamic analysis and test results for the Space Shuttle Main Engine turbine blades. Athough these blades are designed to avoid coincidence of natural frequencies with harmonic excitation forces, the complexity of the turbine hardware, its nonlinearities and lack of information regarding the forcing function have led to fatigue failures. A comparison of single-blade analysis and test modal frequencies, shapes, and stresses is given; analysis techniques to describe the forcing function, compute dynamic responses, and incorporate the nonlinearities of Coulomb-friction dampers are presented. Recommendations are made for new research to improve forcing function computations and structural damping estimates used in the analysis.

  19. Integrating atomistic molecular dynamics simulations, experiments, and network analysis to study protein dynamics: strength in unity

    PubMed Central

    Papaleo, Elena

    2015-01-01

    In the last years, we have been observing remarkable improvements in the field of protein dynamics. Indeed, we can now study protein dynamics in atomistic details over several timescales with a rich portfolio of experimental and computational techniques. On one side, this provides us with the possibility to validate simulation methods and physical models against a broad range of experimental observables. On the other side, it also allows a complementary and comprehensive view on protein structure and dynamics. What is needed now is a better understanding of the link between the dynamic properties that we observe and the functional properties of these important cellular machines. To make progresses in this direction, we need to improve the physical models used to describe proteins and solvent in molecular dynamics, as well as to strengthen the integration of experiments and simulations to overcome their own limitations. Moreover, now that we have the means to study protein dynamics in great details, we need new tools to understand the information embedded in the protein ensembles and in their dynamic signature. With this aim in mind, we should enrich the current tools for analysis of biomolecular simulations with attention to the effects that can be propagated over long distances and are often associated to important biological functions. In this context, approaches inspired by network analysis can make an important contribution to the analysis of molecular dynamics simulations. PMID:26075210

  20. Speciation of lead in contaminated soil under the influence of plants and phosphate amendment type

    NASA Astrophysics Data System (ADS)

    Diyab, C.; Juillot, F.; Dumat, C.; Morin, G.; Benedetti, M.; Mariotti, A.

    2003-05-01

    The toxicity of an element and its behaviour depend on its chemical form (speciation) and concentration. The objective of our work is to study the speciation of Pb under the influence of phosphate amendments (solide, soluble) and type of plants: peas, tomato (pH variation, organic acid complexes formation) in a polluted soil near one of Europe's largest lead contaminated area in the north of France. Chemical and physical methods were used to determine the speciation of lead in rhizospheric soil (chemical extraction, μFX, EXAFS, SEM.). The formation of lead phosphate complexe was confirmed in rhizospheric soil of both plants. Quantity and chemical structure of phosphate lead complexe formed in soil, varied with the type of plante and phosphate amendement added. Analysis of organic acids secreted by the two plantes were performed to understand the effect of organic acids on the speciation of lead in the rhizospheric soil.

  1. Dynamic mechanical analysis: A practical introduction to techniques and applications

    SciTech Connect

    Menard, K.

    1999-03-01

    This introduction provides the chemist, chemical engineer, or materials scientists with a starting point to understand the applications of dynamic mechanical analysis, its workings, and its advantages and limitations. This book serves as a systematic study of manufacturing polymeric materials and components as well as for developing new materials. Contents include: introduction to dynamic mechanical analysis; basic rheological concepts: stress, strain, and flow; rheology basic: creep-recovery and stress relaxation; dynamic testing; time-temperature scans part 1: transitions in polymers; time and temperature studies part 2: thermosets; frequency scans; DMA applications to real problems: guidelines; and appendix: sample experiments for the DMA.

  2. Structural dynamic analysis of the Space Shuttle Main Engine

    NASA Technical Reports Server (NTRS)

    Scott, L. P.; Jamison, G. T.; Mccutcheon, W. A.; Price, J. M.

    1981-01-01

    This structural dynamic analysis supports development of the SSME by evaluating components subjected to critical dynamic loads, identifying significant parameters, and evaluating solution methods. Engine operating parameters at both rated and full power levels are considered. Detailed structural dynamic analyses of operationally critical and life limited components support the assessment of engine design modifications and environmental changes. Engine system test results are utilized to verify analytic model simulations. The SSME main chamber injector assembly is an assembly of 600 injector elements which are called LOX posts. The overall LOX post analysis procedure is shown.

  3. Dynamics analysis of space robot manipulator with joint clearance

    NASA Astrophysics Data System (ADS)

    Zhao, Yang; Bai, Zheng Feng

    2011-04-01

    A computational methodology for analysis of space robot manipulator systems, considering the effects of the clearances in the joint, is presented. The contact dynamics model in joint clearance is established using the nonlinear equivalent spring-damp model and the friction effect is considered using the Coulomb friction model. The space robot system dynamic equation of manipulator with clearance is established. Then the dynamics simulation is presented and the dynamics characteristics of robot manipulator with clearance are analyzed. This work provides a practical method to analyze the dynamics characteristics of space robot manipulator with joint clearance and improves the engineering application. The computational methodology can predict the effects of clearance on space robot manipulator preferably, which is the basis of space robot manipulator design, precision analysis and ground test.

  4. Error Analysis of Modified Langevin Dynamics

    NASA Astrophysics Data System (ADS)

    Redon, Stephane; Stoltz, Gabriel; Trstanova, Zofia

    2016-06-01

    We consider Langevin dynamics associated with a modified kinetic energy vanishing for small momenta. This allows us to freeze slow particles, and hence avoid the re-computation of inter-particle forces, which leads to computational gains. On the other hand, the statistical error may increase since there are a priori more correlations in time. The aim of this work is first to prove the ergodicity of the modified Langevin dynamics (which fails to be hypoelliptic), and next to analyze how the asymptotic variance on ergodic averages depends on the parameters of the modified kinetic energy. Numerical results illustrate the approach, both for low-dimensional systems where we resort to a Galerkin approximation of the generator, and for more realistic systems using Monte Carlo simulations.

  5. Dynamic network analysis of protein interactions

    NASA Astrophysics Data System (ADS)

    Almaas, Eivind; Deri, Joya

    2007-03-01

    Network approaches have recently become a popular tool to study complex systems such as cellular metabolism and protein interactions. A substantial number of analyses of the protein interaction network (PIN) of the yeast Saccharomyces cerevisiae have considered this network as a static entity, not taking the network's dynamic nature into account. Here, we examine the time-variation of gene regulation superimposed on the PIN by defining mRNA expression profiles throughout the cell cycle as node weights. To characterize these network dynamics, we have both developed a set of novel network measures as well as studied previously published measures for weighted networks. We expect that our approach will provide a deeper understanding of protein regulation during the cell cycle.

  6. Error Analysis of Modified Langevin Dynamics

    NASA Astrophysics Data System (ADS)

    Redon, Stephane; Stoltz, Gabriel; Trstanova, Zofia

    2016-08-01

    We consider Langevin dynamics associated with a modified kinetic energy vanishing for small momenta. This allows us to freeze slow particles, and hence avoid the re-computation of inter-particle forces, which leads to computational gains. On the other hand, the statistical error may increase since there are a priori more correlations in time. The aim of this work is first to prove the ergodicity of the modified Langevin dynamics (which fails to be hypoelliptic), and next to analyze how the asymptotic variance on ergodic averages depends on the parameters of the modified kinetic energy. Numerical results illustrate the approach, both for low-dimensional systems where we resort to a Galerkin approximation of the generator, and for more realistic systems using Monte Carlo simulations.

  7. Network analysis of human heartbeat dynamics

    NASA Astrophysics Data System (ADS)

    Shao, Zhi-Gang

    2010-02-01

    We construct the complex networks of human heartbeat dynamics and investigate their statistical properties, using the visibility algorithm proposed by Lacasa and co-workers [Proc. Natl. Acad. Sci. U.S.A. 105, 4972 (2008)]. Our results show that the associated networks for the time series of heartbeat interval are always scale-free, high clustering, hierarchy, and assortative mixing. In particular, the assortative coefficient of associated networks could distinguish between healthy subjects and patients with congestive heart failure.

  8. Dynamic analysis of a parasite population model

    NASA Astrophysics Data System (ADS)

    Sibona, G. J.; Condat, C. A.

    2002-03-01

    We study the dynamics of a model that describes the competitive interaction between an invading species (a parasite) and its antibodies in an living being. This model was recently used to examine the dynamical competition between Tripanosoma cruzi and its antibodies during the acute phase of Chagas' disease. Depending on the antibody properties, the model yields three types of outcomes, corresponding, respectively, to healing, chronic disease, and host death. Here, we study the dynamics of the parasite-antibody interaction with the help of simulations, obtaining phase trajectories and phase diagrams for the system. We show that, under certain conditions, the size of the parasite inoculation can be crucial for the infection outcome and that a retardation in the stimulated production of an antibody species may result in the parasite gaining a definitive advantage. We also find a criterion for the relative sizes of the parameters that are required if parasite-generated decoys are indeed to help the invasion. Decoys may also induce a qualitatively different outcome: a limit cycle for the antibody-parasite population phase trajectories.

  9. Unsupervised analysis of small animal dynamic Cerenkov luminescence imaging

    NASA Astrophysics Data System (ADS)

    Spinelli, Antonello E.; Boschi, Federico

    2011-12-01

    Clustering analysis (CA) and principal component analysis (PCA) were applied to dynamic Cerenkov luminescence images (dCLI). In order to investigate the performances of the proposed approaches, two distinct dynamic data sets obtained by injecting mice with 32P-ATP and 18F-FDG were acquired using the IVIS 200 optical imager. The k-means clustering algorithm has been applied to dCLI and was implemented using interactive data language 8.1. We show that cluster analysis allows us to obtain good agreement between the clustered and the corresponding emission regions like the bladder, the liver, and the tumor. We also show a good correspondence between the time activity curves of the different regions obtained by using CA and manual region of interest analysis on dCLIT and PCA images. We conclude that CA provides an automatic unsupervised method for the analysis of preclinical dynamic Cerenkov luminescence image data.

  10. Selenium speciation in framboidal and euhedral pyrites in shales.

    PubMed

    Matamoros-Veloza, Adriana; Peacock, Caroline L; Benning, Liane G

    2014-08-19

    The release of Se from shales is poorly understood because its occurrence, distribution, and speciation in the various components of shale are unknown. To address this gap we combined bulk characterization, sequential extractions, and spatially resolved μ-focus spectroscopic analyses and investigated the occurrence and distribution of Se and other associated elements (Fe, As, Cr, Ni, and Zn) and determined the Se speciation at the μ-scale in typical, low bulk Se containing shales. Our results revealed Se primarily correlated with the pyrite fraction with exact Se speciation highly dependent on pyrite morphology. In euhedral pyrites, we found Se(-II) substitutes for S in the mineral structure. However, we also demonstrate that Se is associated with framboidal pyrite grains as a discrete, independent FeSex phase. The presence of this FeSex species has major implications for Se release, because FeSex species oxidize much faster than Se substituted in the euhedral pyrite lattice. Thus, such an FeSex species will enhance and control the dynamics of Se weathering and release into the aqueous environment. PMID:25032506

  11. Assessment of aerodynamic and dynamic models in a comprehensive analysis

    NASA Technical Reports Server (NTRS)

    Johnson, W.

    1985-01-01

    The history, status, and lessons of a comprehensive analysis for rotorcraft are reviewed. The development, features, and capabilities of the analysis are summarized, including the aerodynamic and dynamic models that were used. Examples of correlation of the computational results with experimental data are given, extensions of the analysis for research in several topics of helicopter technology are discussed, and the experiences of outside users are summarized. Finally, the required capabilities and approach for the next comprehensive analysis are described.

  12. US EPA's SPECIATE 4.4 Database: Development and Uses

    EPA Science Inventory

    SPECIATE is the U.S. Environmental Protection Agency’s (EPA) repository of volatile organic gas and particulate matter (PM) speciation profiles of air pollution sources. EPA released SPECIATE 4.4 in early 2014 and, in total, the SPECIATE 4.4 database includes 5,728 PM, vola...

  13. US EPA's SPECIATE 4.4 Database: Development and Uses

    EPA Science Inventory

    SPECIATE is the U.S. Environmental Protection Agency’s (EPA) repository of volatile organic gas and particulate matter (PM) speciation profiles of air pollution sources. EPA released SPECIATE 4.4 in early 2014 and, in total, the SPECIATE 4.4 database includes 5,728 PM, volatile o...

  14. Literal algebra for satellite dynamics. [perturbation analysis

    NASA Technical Reports Server (NTRS)

    Gaposchkin, E. M.

    1975-01-01

    A description of the rather general class of operations available is given and the operations are related to problems in satellite dynamics. The implementation of an algebra processor is discussed. The four main categories of symbol processors are related to list processing, string manipulation, symbol manipulation, and formula manipulation. Fundamental required operations for an algebra processor are considered. It is pointed out that algebra programs have been used for a number of problems in celestial mechanics with great success. The advantage of computer algebra is its accuracy and speed.

  15. Analytical analysis of particle-core dynamics

    SciTech Connect

    Batygin, Yuri K

    2010-01-01

    Particle-core interaction is a well-developed model of halo formation in high-intensity beams. In this paper, we present an analytical solution for averaged, single particle dynamics, around a uniformly charged beam. The problem is analyzed through a sequence of canonical transformations of the Hamiltonian, which describes nonlinear particle oscillations. A closed form expression for maximum particle deviation from the axis is obtained. The results of this study are in good agreement with numerical simulations and with previously obtained data.

  16. Laser speckle analysis of retinal vascular dynamics

    PubMed Central

    Neganova, Anastasiia Y; Postnov, Dmitry D; Jacobsen, Jens Christian B.; Sosnovtseva, Olga

    2016-01-01

    Studies of vascular responses are usually performed on isolated vessels or on single vessels in vivo. This allows for precise measurements of diameter or blood flow. However, dynamical responses of the whole microvascular network are difficult to access experimentally. We suggest to use full-field laser speckle imaging to evaluate vascular responses of the retinal network. Image segmentation and vessel recognition algorithms together with response mapping allow us to analyze diameter changes and blood flow responses in the intact retinal network upon systemic administration of the vasoconstrictor angiotensin II, the vasodilator acetylcholine or on the changing level of anesthesia in in vivo rat preparations.

  17. Groundwater dynamic in a coastal aquifer using statistical analysis and geochemical modeling

    NASA Astrophysics Data System (ADS)

    Garone, A.; Battistel, M.; Barbieri, M.; Parisse, B.

    2012-04-01

    Coastal aquifers are natural environments particularly vulnerable and seriously threatened. Coastal areas are densely populated and this leads to a massive withdrawal of groundwater. These conditions may induce a salinization process of groundwater, due to the change of the balances that govern the coexistence between fresh and salt water. Hydrochemical data from well water samples collected during a year of monitoring in Palo Laziale area are used to evaluate water quality and to determine processes that control water chemistry. Geochemical ratios (EC vs rCl; Na vs Cl; rCl/rBr vs Cl) give information about mixing, cation exchange and salinity acquisition process. Multivariate statistical approach and geochemical modeling are adopted to assist the interpretation of the geochemical data, particularly cluster analysis and Principal Component Analysis. Software PHREEQC was used for geochemical modeling and data processing. In add to determining chemical components and some chemical-physical properties (T, pH,electrical conductivity, TDS) the studied provided following: statistical analysis of data, thermodynamic equilibrium of aquifer with quantitative analysis of the saturation index and the speciation of trace and minor elements. According to statistical analysis is possible to identify two different groups of water: typical of domestic wells in Palo SIC area and external wells. PCA analysis suggests that Palo Laziale SIC is located in an area of interface between fresh and salt water and there is a significant amount of water recharge (the monitoring of the area occurred in a year particularly rainy). Calculation of saturation indices (SI) for primary minerals (aragonite, calcite a dolomite-d) was carried out to obtain a quantitative estimate of the instability of these phases. The result of the calculation of saturation indices allow to define a sequence of instability of minerals: calcite > dolomite > aragonite. The order of solubility indicates that during the

  18. Stability analysis of dynamic thin shells

    NASA Astrophysics Data System (ADS)

    Lobo, Francisco S. N.; Crawford, Paulo

    2005-11-01

    We analyse the stability of generic spherically symmetric thin shells to linearized perturbations around static solutions. We include the momentum flux term in the conservation identity, deduced from the 'ADM' constraint and the Lanczos equations. Following the Ishak Lake analysis, we deduce a master equation which dictates the stable equilibrium configurations. Considering the transparency condition, we study the stability of thin shells around black holes, showing that our analysis is in agreement with previous results. Applying the analysis to traversable wormhole geometries, by considering specific choices for the form function, we deduce stability regions and find that the latter may be significantly increased by considering appropriate choices for the redshift function.

  19. Analysis of multi-domain protein dynamics

    PubMed Central

    Roy, Amitava; Hua, Duy P; Post, Carol Beth

    2016-01-01

    Proteins with a modular architecture of multiple domains connected by linkers often exhibit diversity in the relative positions of domains while the domain tertiary structure remains unchanged. The biological function of these modular proteins, or the regulation of their activity depends on the variation in domain orientation and separation. Accordingly, careful characterization of inter-domain motion and correlated fluctuations of multi-domain systems is relevant for understanding the functional behavior of modular proteins. Molecular dynamics (MD) simulations provides a powerful approach to study these motions in atomic detail. Nevertheless, the common procedure for analyzing fluctuations from MD simulations after overall rigid-body alignment fails for multi-domain proteins; it greatly overestimates correlated positional fluctuations in the presence of relative domain motion. We show here that expressing the atomic motions of a multi-domain protein as a combination of displacement within the domain reference frame and motion of the relative domains correctly separates the internal motions to allow a useful description of correlated fluctuations. We illustrate the methodology of separating the domain fluctuations and local fluctuations by application to the tandem SH2 domains of human Syk protein kinase and by characterizing an effect of phosphorylation on the dynamics. Correlated motions are assessed from a distance covariance rather than the more common vector-coordinate covariance. The approach makes it possible to calculate the proper correlations in fluctuations internal to a domain as well as between domains. PMID:26675644

  20. Bootstrap Standard Error Estimates in Dynamic Factor Analysis

    ERIC Educational Resources Information Center

    Zhang, Guangjian; Browne, Michael W.

    2010-01-01

    Dynamic factor analysis summarizes changes in scores on a battery of manifest variables over repeated measurements in terms of a time series in a substantially smaller number of latent factors. Algebraic formulae for standard errors of parameter estimates are more difficult to obtain than in the usual intersubject factor analysis because of the…

  1. Conducting Qualitative Data Analysis: Managing Dynamic Tensions within

    ERIC Educational Resources Information Center

    Chenail, Ronald J.

    2012-01-01

    In the third of a series of "how-to" essays on conducting qualitative data analysis, Ron Chenail examines the dynamic tensions within the process of qualitative data analysis that qualitative researchers must manage in order to produce credible and creative results. These tensions include (a) the qualities of the data and the qualitative data…

  2. Overview of MSFC's Applied Fluid Dynamics Analysis Group Activities

    NASA Technical Reports Server (NTRS)

    Garcia, Roberto; Griffin, Lisa; Williams, Robert

    2003-01-01

    TD64, the Applied Fluid Dynamics Analysis Group, is one of several groups with high-fidelity fluids design and analysis expertise in the Space Transportation Directorate at Marshall Space Flight Center (MSFC). TD64 assists personnel working on other programs. The group participates in projects in the following areas: turbomachinery activities, nozzle activities, combustion devices, and the Columbia accident investigation.

  3. Genomic divergence during speciation: causes and consequences

    PubMed Central

    Nosil, Patrik; Feder, Jeffrey L.

    2012-01-01

    Speciation is a fundamental process responsible for the diversity of life. Progress has been made in detecting individual ‘speciation genes’ that cause reproductive isolation. In contrast, until recently, less attention has been given to genome-wide patterns of divergence during speciation. Thus, major questions remain concerning how individual speciation genes are arrayed within the genome, and how this affects speciation. This theme issue is dedicated to exploring this genomic perspective of speciation. Given recent sequencing and computational advances that now allow genomic analyses in most organisms, the goal is to help move the field towards a more integrative approach. This issue draws upon empirical studies in plants and animals, and theoretical work, to review and further document patterns of genomic divergence. In turn, these studies begin to disentangle the role that different processes, such as natural selection, gene flow and recombination rate, play in generating observed patterns. These factors are considered in the context of how genomes diverge as speciation unfolds, from beginning to end. The collective results point to how experimental work is now required, in conjunction with theory and sequencing studies, to move the field from descriptive studies of patterns of divergence towards a predictive framework that tackles the causes and consequences of genome-wide patterns. PMID:22201163

  4. Decision Analysis of Dynamic Spectrum Access Rules

    SciTech Connect

    Juan D. Deaton; Luiz A. DaSilva; Christian Wernz

    2011-12-01

    A current trend in spectrum regulation is to incorporate spectrum sharing through the design of spectrum access rules that support Dynamic Spectrum Access (DSA). This paper develops a decision-theoretic framework for regulators to assess the impacts of different decision rules on both primary and secondary operators. We analyze access rules based on sensing and exclusion areas, which in practice can be enforced through geolocation databases. Our results show that receiver-only sensing provides insufficient protection for primary and co-existing secondary users and overall low social welfare. On the other hand, using sensing information between the transmitter and receiver of a communication link, provides dramatic increases in system performance. The performance of using these link end points is relatively close to that of using many cooperative sensing nodes associated to the same access point and large link exclusion areas. These results are useful to regulators and network developers in understanding in developing rules for future DSA regulation.

  5. Crustal Dynamics Project data analysis, 1990

    NASA Technical Reports Server (NTRS)

    Caprette, D. S.; Ma, C.; Ryan, J. W.

    1990-01-01

    The Goddard Very Long Baseline Interferometry (VLBI) group reports the results of analyzing 1073 Mark 3 data sets acquired from fixed and mobile observing sites through the end of 1989 and available to the Crustal Dynamics Project. Two large solutions, GLB656 and GLB657, were used to establish a VLBI reference frame with an origin coincident with the ITRF89. Another large solution, GLB658, was used to obtain Earth rotation parameters, nutation offsets, and global source positions. Site velocities were obtained from another large solution, GLB659. A fifth large solution, GLB660, was used to obtain baseline evolution. Site positions are tabulated on a yearly basis from 1979 through 1992. Site velocities are presented in both Cartesian and topocentric coordinates. The results include 76 sources, 80 sites, and 422 baselines.

  6. Condensed Antenna Structural Models for Dynamics Analysis

    NASA Technical Reports Server (NTRS)

    Levy, R.

    1985-01-01

    Condensed degree-of-freedom models are compared with large degree-of-freedom finite-element models of a representative antenna-tipping and alidade structure, for both locked and free-rotor configurations. It is shown that: (1) the effective-mass models accurately reproduce the lower-mode natural frequencies of the finite element model; (2) frequency responses for the two types of models are in agreement up to at least 16 rad/s for specific points; and (3) transient responses computed for the same points are in good agreement. It is concluded that the effective-mass model, which best represents the five lower modes of the finite-element model, is a sufficient representation of the structure for future incorporation with a total servo control structure dynamic simulation.

  7. Spectrum analysis with quantum dynamical systems

    NASA Astrophysics Data System (ADS)

    Ng, Shilin; Ang, Shan Zheng; Wheatley, Trevor A.; Yonezawa, Hidehiro; Furusawa, Akira; Huntington, Elanor H.; Tsang, Mankei

    2016-04-01

    Measuring the power spectral density of a stochastic process, such as a stochastic force or magnetic field, is a fundamental task in many sensing applications. Quantum noise is becoming a major limiting factor to such a task in future technology, especially in optomechanics for temperature, stochastic gravitational wave, and decoherence measurements. Motivated by this concern, here we prove a measurement-independent quantum limit to the accuracy of estimating the spectrum parameters of a classical stochastic process coupled to a quantum dynamical system. We demonstrate our results by analyzing the data from a continuous-optical-phase-estimation experiment and showing that the experimental performance with homodyne detection is close to the quantum limit. We further propose a spectral photon-counting method that can attain quantum-optimal performance for weak modulation and a coherent-state input, with an error scaling superior to that of homodyne detection at low signal-to-noise ratios.

  8. Nonlinear dynamic analysis of flexible multibody systems

    NASA Technical Reports Server (NTRS)

    Bauchau, Olivier A.; Kang, Nam Kook

    1991-01-01

    Two approaches are developed to analyze the dynamic behavior of flexible multibody systems. In the first approach each body is modeled with a modal methodology in a local non-inertial frame of reference, whereas in the second approach, each body is modeled with a finite element methodology in the inertial frame. In both cases, the interaction among the various elastic bodies is represented by constraint equations. The two approaches were compared for accuracy and efficiency: the first approach is preferable when the nonlinearities are not too strong but it becomes cumbersome and expensive to use when many modes must be used. The second approach is more general and easier to implement but could result in high computation costs for a large system. The constraints should be enforced in a time derivative fashion for better accuracy and stability.

  9. Analysis & Simulation of Dynamics in Supercooled Liquids

    NASA Astrophysics Data System (ADS)

    Elmatad, Yael Sarah

    2011-12-01

    The nature of supercooled liquids and the glass transition has been debated by many scientists. Several theories have been put forth to describe the remarkable properties of this out-of-equilibrium material. Each of these theories makes specific predictions as to how the scaling of various transport properties in supercooled materials should behave. Given access to a large pool of high-quality supercooled liquid data we seek to compare these theories to one another. Moreover, we explore properties of a pair of models which are the basis for one particularly attractive theory---Chandler-Garrahan theory---and discuss the models' behavior in space-time and possible implications to the behavior of experimental supercooled liquids. Here we investigate the nature of dynamics in supercooled liquids using a two pronged approach. First we analyze the transport properties found in experiments and simulations of supercooled liquids. Then, we analyze simulation trajectories for lattice models which reproduce many of the interesting properties of supercooled liquids. In doing so, we illuminate several glass universalities, common properties of a wide variety of glass formers. By analyzing relaxation time and viscosity data for over 50 data sets and 1200 points, we find that relaxation time can be collapsed onto a single, parabolic curve. This collapse supports a theory of universal glass behavior based on facilitated models proposed by David Chandler and Juan Garrahan in 2003. We then show that the parabolic fit parameters for any particular liquid are a material property: they converge fast and are capable of predicting behavior in regions beyond the included data sets. We compare this property to other popular fitting schemes such as the Vogel-Fulcher, double exponential, and fractional exponential forms and conclude that these three forms result in parameters which are non predictive and therefore not material properties. Additionally, we examine the role of attractive

  10. Wavelet spectrum analysis approach to model validation of dynamic systems

    NASA Astrophysics Data System (ADS)

    Jiang, Xiaomo; Mahadevan, Sankaran

    2011-02-01

    Feature-based validation techniques for dynamic system models could be unreliable for nonlinear, stochastic, and transient dynamic behavior, where the time series is usually non-stationary. This paper presents a wavelet spectral analysis approach to validate a computational model for a dynamic system. Continuous wavelet transform is performed on the time series data for both model prediction and experimental observation using a Morlet wavelet function. The wavelet cross-spectrum is calculated for the two sets of data to construct a time-frequency phase difference map. The Box-plot, an exploratory data analysis technique, is applied to interpret the phase difference for validation purposes. In addition, wavelet time-frequency coherence is calculated using the locally and globally smoothed wavelet power spectra of the two data sets. Significance tests are performed to quantitatively verify whether the wavelet time-varying coherence is significant at a specific time and frequency point, considering uncertainties in both predicted and observed time series data. The proposed wavelet spectrum analysis approach is illustrated with a dynamics validation challenge problem developed at the Sandia National Laboratories. A comparison study is conducted to demonstrate the advantages of the proposed methodologies over classical frequency-independent cross-correlation analysis and time-independent cross-coherence analysis for the validation of dynamic systems.

  11. Possible method for dissolved organic carbon speciation in forest soils

    NASA Astrophysics Data System (ADS)

    Drabek, O.; Tejnecký, V.; Ash, C.; Hubova, P.; Boruvka, L.

    2013-12-01

    Dissolved organic carbon (DOC) is a natural part of dissolved organic matter and it plays an important role in the biogeochemistry of soil processes. Low Molecular Mass Organic Acids (LMMOA) are an essential part of DOC. These acids play a key role in chemical processes that affect the entire soil environment. Knowing the amount of DOC and the speciation of LMMOA is required for realistic equilibrium modelling of soil chemical processes and transport mechanisms. There have been a number of proposed methods for the quantitative analysis of DOC and for speciation of LMMOA. The first aim of this contribution is to introduce and test a modified spectroscopic method for the determination of water-extractable organic carbon (WEOC) from forest soils. In general this method is based on the oxidization of WEOC by chromium-sulphuric acid. The presented method can be used as an economical alternative to the classical, more financially demanding elemental analysis. However, the main aim is to test the reliability of the method for LMMOA speciation. Ion exchange chromatography (IC) with hydroxide elution has proven to be a useful tool for the determination of LMMOA in many different water-based samples. However, the influence of multivalent cations (often present in environmental samples) on IC results has not yet been sufficiently studied. In order to assess the influence of Al, Fe, Mn, Mg and Ca on the amount of LMMOA determined by IC, an extensive set of model solutions was prepared and immediately analysed by means of IC. Moreover, the influence of pH on determined amounts of LMMOA in model solutions and representative soil aqueous extracts was investigated. These experimental results were compared to expected values and also to results provided by the chemical equilibrium model - PHREEQC. Based on the above listed research, some modifications to the common IC method for LMMOA speciation are presented.

  12. Blade loss transient dynamic analysis of turbomachinery

    NASA Technical Reports Server (NTRS)

    Stallone, M. J.; Gallardo, V.; Storace, A. F.; Bach, L. J.; Black, G.; Gaffney, E. F.

    1982-01-01

    This paper reports on work completed to develop an analytical method for predicting the transient non-linear response of a complete aircraft engine system due to the loss of a fan blade, and to validate the analysis by comparing the results against actual blade loss test data. The solution, which is based on the component element method, accounts for rotor-to-casing rubs, high damping and rapid deceleration rates associated with the blade loss event. A comparison of test results and predicted response show good agreement except for an initial overshoot spike not observed in test. The method is effective for analysis of large systems.

  13. Imaging Brain Dynamics Using Independent Component Analysis

    PubMed Central

    Jung, Tzyy-Ping; Makeig, Scott; McKeown, Martin J.; Bell, Anthony J.; Lee, Te-Won; Sejnowski, Terrence J.

    2010-01-01

    The analysis of electroencephalographic (EEG) and magnetoencephalographic (MEG) recordings is important both for basic brain research and for medical diagnosis and treatment. Independent component analysis (ICA) is an effective method for removing artifacts and separating sources of the brain signals from these recordings. A similar approach is proving useful for analyzing functional magnetic resonance brain imaging (fMRI) data. In this paper, we outline the assumptions underlying ICA and demonstrate its application to a variety of electrical and hemodynamic recordings from the human brain. PMID:20824156

  14. Dynamic fracture mechanics analysis for an edge delamination crack

    NASA Technical Reports Server (NTRS)

    Rizzi, Stephen A.; Doyle, James F.

    1994-01-01

    A global/local analysis is applied to the problem of a panel with an edge delamination crack subject to an impulse loading to ascertain the dynamic J integral. The approach uses the spectral element method to obtain the global dynamic response and local resultants to obtain the J integral. The variation of J integral along the crack front is shown. The crack behavior is mixed mode (Mode 2 and Mode 3), but is dominated by the Mode 2 behavior.

  15. Dynamical system analysis of unstable flow phenomena in centrifugal blower

    NASA Astrophysics Data System (ADS)

    Garcia, David; Stickland, Matthew; Liśkiewicz, Grzegorz

    2015-09-01

    Methods of dynamical system analysis were employed to analyze unsteady phenomena in a centrifugal blower. Pressure signals gathered at different control points were decomposed into their Principal Components (PCs) by means of Singular Spectrum Analysis (SSA). Certain number of PCs was considered in the analysis based on their statistical correlation. Projection of the original signal onto its PCs allowed to draw the phase trajectory that clearly separated non-stable blower working conditions from its regular operation.

  16. Floquet analysis in accretion disc dynamics

    NASA Astrophysics Data System (ADS)

    Tamburini, F.; Bianchini, A.

    2002-01-01

    Floquet analysis is proposed to analyze the evolution of exponentially growing modes of the local instabilities in accretion discs of CVs induced by perturbations in the velocity field. Both the stability of the disc and the deviation of the Reynolds number are described by the Floquet exponents μj of the perturbations, which represent Landau's modes of the fluid.

  17. VOCs Speciation From Steam Boiler Stacks of Industries Located in Naucalpan

    NASA Astrophysics Data System (ADS)

    Mejia, G. M.; Tejeda, D. D.; Bremauntz, M. P.; Valdez, A.; Montufar, P. C.; Martinez, M. A.; Sierra, M. J.; Gonzalez, C. A.

    2007-05-01

    Results of VOCs speciation from industrial steam boiler stacks located in Naucalpan are presented and discussed. This municipality is located north of the Metropolitan Zone of the Valley of Mexico (MZVM). Speciation of VOCs is important to generate information about sources of pollution, to update emission inventories, to study the dynamics of pollutants in the atmosphere, and to estimate possible risks of population exposure. This information is valuable for decision making on air pollution control strategies. Samples from 35 steam boilers form industries burning Diesel, LPG, or CNG were taken using the US-EPA Method 18. Selected samples from the use of different fuels were analyzed using gas chromatography and flame ionization detection (GC-FID) according to US-EPA protocol TO-14. The VOCs analyzed included alkanes of 9 carbons or less, alkenes of 7 carbons or less and aromatics (families of benzene). The results show consistency on the VOCs detected on Diesel samples. The main compounds found were 1- Butene+iButylene, m/p-Xylene, Ethane, Propene, Propane, Acetylene, 2Me-1Butene, and Toluene. The average concentrations of these compounds were in the range of 130 to 385 ppbC. The results of LPG samples did not show a definite pattern of VOCs, although light components predominate and, in some samples, Toluene and Xylene. These last components were not expected for industries reporting the use of LPG, perhaps due to the use of a combination of fuels and mistakes in the reports of fuel used at the time of sampling. The analysis of CNG samples show predominance of light VOCs, in the range of 90 to 300 ppbC. As in the case of LPG, some aromatics showed high concentrations in some samples analyzed perhaps due to the use of different fuels in the boiler. The results of this study are the first results of VOCs speciation obtained form exhaust gases from stacks of Mexican industries. The data reported are valuable to analyze emission inventories of VOCs and to better

  18. Iron speciation and its biological availability in seawater: A workshop

    SciTech Connect

    Wells, M.L.; Bruland, K.W.

    1995-09-08

    This workshop brought together marine chemists with expertise in iron chemistry and biologists with expertise in the role of iron in phytoplankton production to discuss controversies regarding the role of iron in oceanic primary productivity and global climatic change. A new paradigm for marine iron biogeochemistry was generated. The five major new items within this paradigm included (1) the nature of iron inputs to the sea, (2) chemical speciation of iron in seawater, (3) relationships between iron chemistry and marine microbial community dynamics, (4) adaptations of marine microbes to iron input, and (5) ecological and biogeochemical implications of changes in iron supply to the sea.

  19. Oxidation-state speciation of

    PubMed

    Hu; Heineman

    2000-06-01

    The analytical utility of chemically modified microelectrodes for oxidation-state speciation of redox couples by cyclic voltammetry has been explored. [Re(I)(DMPE)3]+/[Re(II)(DMPE)3]2+, where DMPE = 1,2-bis(dimethylphosphino)ethane, was studied at carbon-fiber microelectrodes of approximately 5 microm in radius coated with Nafion-entrapped solgel-derived silica (Nafion-silica) composite. The results are compared with cyclic voltammetry of [Fe(CN)6]3-/[Fe(CN)6]4- at bare carbon-fiber microelectrodes. At both microelectrodes, the cathodic and anodic limiting currents are linearly proportional to the concentrations of the reducible and oxidizable species of a redox couple, respectively. The shape of the cyclic voltammogram and the magnitude of the steady-state limiting current are not affected by the potential at which the scan starts. Speciation of both forms of a redox couple could be achieved voltammetrically at the microelectrodes. However, a considerably slower scan rate was required to achieve steady state at the modified electrode because of the smaller diffusion coefficients of [Re(I)(DMPE)3]+ and [Re(II)(DMPE)3]2+ in the Nafion-silica composite. The detection limit at the modified electrode was considerably lower (5 x 10(-9) M for [Re(I)(DMPE)3]+) than at the bare electrode (6 x 10(-5) M for [Fe(CN)6]3- and [Fe(CN)6]4-) because of the substantial preconcentration of [Re(I)(DMPE)3]+ by the Nafion-silica composite. PMID:10857611

  20. Traffic chaotic dynamics modeling and analysis of deterministic network

    NASA Astrophysics Data System (ADS)

    Wu, Weiqiang; Huang, Ning; Wu, Zhitao

    2016-07-01

    Network traffic is an important and direct acting factor of network reliability and performance. To understand the behaviors of network traffic, chaotic dynamics models were proposed and helped to analyze nondeterministic network a lot. The previous research thought that the chaotic dynamics behavior was caused by random factors, and the deterministic networks would not exhibit chaotic dynamics behavior because of lacking of random factors. In this paper, we first adopted chaos theory to analyze traffic data collected from a typical deterministic network testbed — avionics full duplex switched Ethernet (AFDX, a typical deterministic network) testbed, and found that the chaotic dynamics behavior also existed in deterministic network. Then in order to explore the chaos generating mechanism, we applied the mean field theory to construct the traffic dynamics equation (TDE) for deterministic network traffic modeling without any network random factors. Through studying the derived TDE, we proposed that chaotic dynamics was one of the nature properties of network traffic, and it also could be looked as the action effect of TDE control parameters. A network simulation was performed and the results verified that the network congestion resulted in the chaotic dynamics for a deterministic network, which was identical with expectation of TDE. Our research will be helpful to analyze the traffic complicated dynamics behavior for deterministic network and contribute to network reliability designing and analysis.

  1. Dynamical analysis of a spinning solar sail

    NASA Astrophysics Data System (ADS)

    Gong, Shengping; Li, Junfeng; Zhu, Kaijian

    2011-12-01

    This paper discusses the orbit and attitude dynamics of a solar sail, and gives the sufficient conditions of a stable orbit and attitude coupled system. The stability of the coupled system is determined by the orbit stability and attitude stability. Based on the sufficient conditions, a spin-stabilized solar sail of cone configuration is proposed to evolve in the heliocentric displaced orbit. For this kind of configuration, the attitude is always stable by spinning itself. The orbit stability depends on the orbit parameters of the heliocentric displaced orbit, the ratio of the orbit radius to displaced distance and orbit angular velocity. If the center of mass and center of pressure overlap, it can be proved that the coupled system is stable when the orbit parameters are chosen in the stable region. When the center of mass and center of pressure offset exists, the stability of the coupled system can not be judged. A numerical example is given and the result shows that both the orbit and attitude are stable for the case.

  2. Structural dynamic analysis of a ball joint

    NASA Astrophysics Data System (ADS)

    Hwang, Seok-Cheol; Lee, Kwon-Hee

    2012-11-01

    Ball joint is a rotating and swiveling element that is typically installed at the interface between two parts. In an automobile, the ball joint is the component that connects the control arms to the steering knuckle. The ball joint can also be installed in linkage systems for motion control applications. This paper describes the simulation strategy for a ball joint analysis, considering manufacturing process. Its manufacturing process can be divided into plugging and spinning. Then, the interested responses is selected as the stress distribution generated between its ball and bearing. In this paper, a commercial code of NX DAFUL using an implicit integration method is introduced to calculate the response. In addition, the gap analysis is performed to investigate the fitness, focusing on the response of the displacement of a ball stud. Also, the optimum design is suggested through case studies.

  3. Interactive Visual Analysis within Dynamic Ocean Models

    NASA Astrophysics Data System (ADS)

    Butkiewicz, T.

    2012-12-01

    The many observation and simulation based ocean models available today can provide crucial insights for all fields of marine research and can serve as valuable references when planning data collection missions. However, the increasing size and complexity of these models makes leveraging their contents difficult for end users. Through a combination of data visualization techniques, interactive analysis tools, and new hardware technologies, the data within these models can be made more accessible to domain scientists. We present an interactive system that supports exploratory visual analysis within large-scale ocean flow models. The currents and eddies within the models are illustrated using effective, particle-based flow visualization techniques. Stereoscopic displays and rendering methods are employed to ensure that the user can correctly perceive the complex 3D structures of depth-dependent flow patterns. Interactive analysis tools are provided which allow the user to experiment through the introduction of their customizable virtual dye particles into the models to explore regions of interest. A multi-touch interface provides natural, efficient interaction, with custom multi-touch gestures simplifying the otherwise challenging tasks of navigating and positioning tools within a 3D environment. We demonstrate the potential applications of our visual analysis environment with two examples of real-world significance: Firstly, an example of using customized particles with physics-based behaviors to simulate pollutant release scenarios, including predicting the oil plume path for the 2010 Deepwater Horizon oil spill disaster. Secondly, an interactive tool for plotting and revising proposed autonomous underwater vehicle mission pathlines with respect to the surrounding flow patterns predicted by the model; as these survey vessels have extremely limited energy budgets, designing more efficient paths allows for greater survey areas.

  4. Solar Dynamic Power System Stability Analysis and Control

    NASA Technical Reports Server (NTRS)

    Momoh, James A.; Wang, Yanchun

    1996-01-01

    The objective of this research is to conduct dynamic analysis, control design, and control performance test of solar power system. Solar power system consists of generation system and distribution network system. A bench mark system is used in this research, which includes a generator with excitation system and governor, an ac/dc converter, six DDCU's and forty-eight loads. A detailed model is used for modeling generator. Excitation system is represented by a third order model. DDCU is represented by a seventh order system. The load is modeled by the combination of constant power and constant impedance. Eigen-analysis and eigen-sensitivity analysis are used for system dynamic analysis. The effects of excitation system, governor, ac/dc converter control, and the type of load on system stability are discussed. In order to improve system transient stability, nonlinear ac/dc converter control is introduced. The direct linearization method is used for control design. The dynamic analysis results show that these controls affect system stability in different ways. The parameter coordination of controllers are recommended based on the dynamic analysis. It is concluded from the present studies that system stability is improved by the coordination of control parameters and the nonlinear ac/dc converter control stabilize system oscillation caused by the load change and system fault efficiently.

  5. Phase transition analysis of the dynamic instability of microtubules

    NASA Astrophysics Data System (ADS)

    Yarahmadian, Shantia; Yari, Masoud

    2014-09-01

    This paper provides the phase transition analysis of a reaction diffusion equations system modelling the dynamic instability of microtubules (MTs). For this purpose, we have generalized the macroscopic model studied by Mourão et al (2011 Comput. Biol. Chem. 35 269-81). This model investigates the interaction between the MT nucleation, the essential dynamics parameters and extinction, and their impact on the stability of the system. The considered framework encompasses a system of partial differential equations for the elongation and shortening of MTs, where the rates of elongation as well as the lifetimes of the elongating shortening phases are linear functions of GTP-tubulin concentration. In a novel way, this paper investigates the stability analysis and provides a bifurcation analysis for the dynamic instability of MTs in the presence of diffusion and all of the fundamental dynamics parameters. Our stability analysis introduces the phase transition method as a new mathematical tool in the study of MT dynamics. The mathematical tools introduced to handle the problem should be of general use.

  6. Optimization of an anion-exchange high performance liquid chromatography-inductively coupled plasma-mass spectrometric method for the speciation analysis of oxyanion-forming metals and metalloids in leachates from cement-based materials.

    PubMed

    Mulugeta, Mesay; Wibetoe, Grethe; Engelsen, Christian J; Lund, Walter

    2010-10-01

    A method was developed for the speciation analysis of the oxyanions of As(III), As(V), Cr(VI), Mo(VI), Sb(III), Sb(V), Se(IV), Se(VI) and V(V) in leachates from cement-based materials, based on anion-exchange HPLC coupled with ICP-MS. The method was optimized in a two-step multivariate approach: the effect of sample pH and mobile phase composition on resolution, peak symmetry and analysis time was studied. Optimum conditions were then identified for the significant experimental factors by studying their interdependence. A mobile phase composition of 20 mM ammonium nitrate, 50 mM ammonium tartrate and pH 9.5 was found to be a compromise optimum for the separation of the target analytes using isocratic elution. The optimum condition provided separation of the analytes in less than 6 min, at a mobile phase flow rate of 1.0 mL/min. The signal intensities of the analytes were improved by adding 1% methanol to the mobile phase. The limit of detection of the method was in the range 0.2-2.2 μg/L for the various species. The effect of sample constituents was studied using spiked concrete leachates. The method was used to determine the target oxyanionic species in leachates generated from a concrete material in the pH range 3.5-12.4; CrO(4)(2-), MoO(4)(2-) and VO(4)(3-) were detected in most of the leachates. PMID:20813376

  7. Speciation of As(III) and As(V) in water and sediment using reverse-phase ion-pair high-performance liquid chromatography-neutron activation analysis (HPLC-NAA).

    PubMed

    Tulasi, Delali; Adotey, Dennis; Affum, Andrews; Carboo, Derick; Serfor-Armah, Yaw

    2013-10-01

    Total As content and the As species distribution in water and sediments from the Kwabrafo stream, a major water body draining the Obuasi gold mining community in southwestern Ghana, have been investigated. Total As content was determined by instrumental neutron activation analysis (INAA). Ion-pair reverse phase high-performance liquid chromatography-neutron activation analysis (HPLC-NAA) was used for speciation of As species. Solid phase extraction with phosphate buffer was used to extract soluble As species from lyophilized sediment. The mass balance after phosphate extraction of soluble As species in sediment varied from 89 to 96 %. Compositionally appropriate reference material International Atomic Energy Agency (IAEA)-Lake Sediment (SL)-1 was used to check the validity of INAA method for total As determination. The measured values are in good agreement with the IAEA recommended value and also within the 95 % confidence interval. The accuracy of the measurement in terms of relative deviation from the IAEA recommended value was ±0.83 %. "In-house" prepared As(III) and As(V) standards were used to validate the HPLC-INAA method used for the As species determination. Total As concentration in the water samples ranged from 1.15 to 9.20 mg/L. As(III) species in water varied from 0.13 to 0.7 mg/L, while As(V) species varied from 0.79 to 3.85 mg/L. Total As content in sediment ranged from 2,134 to 3,596 mg/kg dry mass. The levels of As(III) and As(V) species in the sediment ranges from 138 to 506 mg/kg dry mass and 156 to 385 mg/kg dry mass, respectively. PMID:23494192

  8. Dynamic Network-Based Epistasis Analysis: Boolean Examples

    PubMed Central

    Azpeitia, Eugenio; Benítez, Mariana; Padilla-Longoria, Pablo; Espinosa-Soto, Carlos; Alvarez-Buylla, Elena R.

    2011-01-01

    In this article we focus on how the hierarchical and single-path assumptions of epistasis analysis can bias the inference of gene regulatory networks. Here we emphasize the critical importance of dynamic analyses, and specifically illustrate the use of Boolean network models. Epistasis in a broad sense refers to gene interactions, however, as originally proposed by Bateson, epistasis is defined as the blocking of a particular allelic effect due to the effect of another allele at a different locus (herein, classical epistasis). Classical epistasis analysis has proven powerful and useful, allowing researchers to infer and assign directionality to gene interactions. As larger data sets are becoming available, the analysis of classical epistasis is being complemented with computer science tools and system biology approaches. We show that when the hierarchical and single-path assumptions are not met in classical epistasis analysis, the access to relevant information and the correct inference of gene interaction topologies is hindered, and it becomes necessary to consider the temporal dynamics of gene interactions. The use of dynamical networks can overcome these limitations. We particularly focus on the use of Boolean networks that, like classical epistasis analysis, relies on logical formalisms, and hence can complement classical epistasis analysis and relax its assumptions. We develop a couple of theoretical examples and analyze them from a dynamic Boolean network model perspective. Boolean networks could help to guide additional experiments and discern among alternative regulatory schemes that would be impossible or difficult to infer without the elimination of these assumption from the classical epistasis analysis. We also use examples from the literature to show how a Boolean network-based approach has resolved ambiguities and guided epistasis analysis. Our article complements previous accounts, not only by focusing on the implications of the hierarchical and

  9. Phosphorous speciation in surface sediments of the Cochin estuary.

    PubMed

    Gireeshkumar, T R; Deepulal, P M; Chandramohanakumar, N

    2013-03-01

    Sequential chemical extraction using chelating agents were used to study the P dynamics and its bioavailability along the surface sediments of the Cochin estuary (southwest coast of India). Sediments were analyzed for major P species (iron bound P, calcium bound P, acid soluble organic P, alkali soluble organic P and residual organic P), Fe, Ca, total carbon, organic carbon, total nitrogen and total sulfur contents. An abrupt increase in the concentration of dissolved inorganic P with increasing salinity was observed in the study region. Iron-bound P exhibited a distinct seasonal pattern with maximum values in the monsoon season when fresh water condition was prevailed in the estuary. As salinity increased, the percentage of iron-bound P decreased, while that of calcium-bound P and total sedimentary sulfur increased. C/P and N/P ratios were low which indicate that large amounts of organic matter enriched with P tend to accumulate in surface sediments. The high organic P contribution in the sedimentary P pool may indicate high organic matter load with incomplete mineralization, as well as comparatively greater percentage of humic substance and resistant organic compounds. Principal component analysis is employed to find the possible processes influencing the speciation of P in the study region and indicate the following processes: (1) the spatial and seasonal variations of calcium bound P and acid soluble organic P was mainly controlled by sediment texture and organic carbon content, (2) sediment redox conditions control the distribution of iron bound P and (3) the terrigenous input of organic P is a significant processes controlling total P content in surface sediments. The bioavailable P was very high in the surface sediments which on an average accounts for 59 % in the pre-monsoon, 65 % in the monsoon and 53 % in the post-monsoon seasons. The surface sediments act as a potential internal source of P in the Cochin estuary. PMID:22843296

  10. Metal Ion Speciation and Dissolved Organic Matter Composition in Soil Solutions

    NASA Astrophysics Data System (ADS)

    Benedetti, M. F.; Ren, Z. L.; Bravin, M.; Tella, M.; Dai, J.

    2014-12-01

    Knowledge of the speciation of heavy metals and the role of dissolved organic matter (DOM) in soil solution is a key to understand metal mobility and ecotoxicity. In this study, soil column-Donnan membrane technique (SC-DMT) was used to measure metal speciation of Cd, Cu, Ni, Pb, and Zn in eighteen soil solutions, covering a wide range of metal sources and concentrations. DOM composition in these soil solutions was also determined. Our results show that in soil solution Pb and Cu are dominant in complex form, whereas Cd, Ni and Zn mainly exist as free ions; for the whole range of soil solutions, only 26.2% of DOM is reactive and consists mainly of fulvic acid (FA). The metal speciation measured by SC-DMT was compared to the predicted ones obtained via the NICA-Donnan model using the measured FA concentrations. The free ion concentrations predicted by speciation modelling were in good agreement with the measurements. Diffusive gradients in thin-films gels (DGT) were also performed to quantify the labile metal species in the fluxes from solid phase to solution in fourteen soils. The concentrations of metal species detected by DGT were compared with the free ion concentrations measured by DMT and the maximum concentrations calculated based on the predicted metal speciation in SC-DMT soil solutions. It is concluded that both inorganic species and a fraction of FA bound species account for the amount of labile metals measured by DGT, consistent with the dynamic features of this technique. The comparisons between measurements using analytical techniques and mechanistic model predictions provided mutual validation in their performance. Moreover, we show that to make accurate modelling of metal speciation in soil solutions, the knowledge of DOM composition is the crucial information, especially for Cu; like in previous studies the modelling of Pb speciation is not optimal and an updated of Pb generic binding parameters is required to reduce model prediction uncertainties.

  11. Chromosomes, conflict, and epigenetics: chromosomal speciation revisited.

    PubMed

    Brown, Judith D; O'Neill, Rachel J

    2010-01-01

    Since Darwin first noted that the process of speciation was indeed the "mystery of mysteries," scientists have tried to develop testable models for the development of reproductive incompatibilities-the first step in the formation of a new species. Early theorists proposed that chromosome rearrangements were implicated in the process of reproductive isolation; however, the chromosomal speciation model has recently been questioned. In addition, recent data from hybrid model systems indicates that simple epistatic interactions, the Dobzhansky-Muller incompatibilities, are more complex. In fact, incompatibilities are quite broad, including interactions among heterochromatin, small RNAs, and distinct, epigenetically defined genomic regions such as the centromere. In this review, we will examine both classical and current models of chromosomal speciation and describe the "evolving" theory of genetic conflict, epigenetics, and chromosomal speciation. PMID:20438362

  12. CORRELATING METAL SPECIATION IN SOILS TO RISK

    EPA Science Inventory

    Understanding bioavailability of metals from exposure to contaminated soils is a challenging aspect of environmental research. This presentation will examine three areas of research with respect to metal speciation in soils as it relates to bioavailability: 1) Pb immobilization a...

  13. AIR INGRESS ANALYSIS: COMPUTATIONAL FLUID DYNAMIC MODELS

    SciTech Connect

    Chang H. Oh; Eung S. Kim; Richard Schultz; Hans Gougar; David Petti; Hyung S. Kang

    2010-08-01

    The Idaho National Laboratory (INL), under the auspices of the U.S. Department of Energy, is performing research and development that focuses on key phenomena important during potential scenarios that may occur in very high temperature reactors (VHTRs). Phenomena Identification and Ranking Studies to date have ranked an air ingress event, following on the heels of a VHTR depressurization, as important with regard to core safety. Consequently, the development of advanced air ingress-related models and verification and validation data are a very high priority. Following a loss of coolant and system depressurization incident, air will enter the core of the High Temperature Gas Cooled Reactor through the break, possibly causing oxidation of the in-the core and reflector graphite structure. Simple core and plant models indicate that, under certain circumstances, the oxidation may proceed at an elevated rate with additional heat generated from the oxidation reaction itself. Under postulated conditions of fluid flow and temperature, excessive degradation of the lower plenum graphite can lead to a loss of structural support. Excessive oxidation of core graphite can also lead to the release of fission products into the confinement, which could be detrimental to a reactor safety. Computational fluid dynamic model developed in this study will improve our understanding of this phenomenon. This paper presents two-dimensional and three-dimensional CFD results for the quantitative assessment of the air ingress phenomena. A portion of results of the density-driven stratified flow in the inlet pipe will be compared with results of the experimental results.

  14. COMPUTATIONAL FLUID DYNAMICS MODELING ANALYSIS OF COMBUSTORS

    SciTech Connect

    Mathur, M.P.; Freeman, Mark; Gera, Dinesh

    2001-11-06

    In the current fiscal year FY01, several CFD simulations were conducted to investigate the effects of moisture in biomass/coal, particle injection locations, and flow parameters on carbon burnout and NO{sub x} inside a 150 MW GEEZER industrial boiler. Various simulations were designed to predict the suitability of biomass cofiring in coal combustors, and to explore the possibility of using biomass as a reburning fuel to reduce NO{sub x}. Some additional CFD simulations were also conducted on CERF combustor to examine the combustion characteristics of pulverized coal in enriched O{sub 2}/CO{sub 2} environments. Most of the CFD models available in the literature treat particles to be point masses with uniform temperature inside the particles. This isothermal condition may not be suitable for larger biomass particles. To this end, a stand alone program was developed from the first principles to account for heat conduction from the surface of the particle to its center. It is envisaged that the recently developed non-isothermal stand alone module will be integrated with the Fluent solver during next fiscal year to accurately predict the carbon burnout from larger biomass particles. Anisotropy in heat transfer in radial and axial will be explored using different conductivities in radial and axial directions. The above models will be validated/tested on various fullscale industrial boilers. The current NO{sub x} modules will be modified to account for local CH, CH{sub 2}, and CH{sub 3} radicals chemistry, currently it is based on global chemistry. It may also be worth exploring the effect of enriched O{sub 2}/CO{sub 2} environment on carbon burnout and NO{sub x} concentration. The research objective of this study is to develop a 3-Dimensional Combustor Model for Biomass Co-firing and reburning applications using the Fluent Computational Fluid Dynamics Code.

  15. Arsenic concentration and speciation in infant formulas and first foods

    PubMed Central

    Jackson, Brian P.; Taylor, Vivien F.; Punshon, Tracy; Cottingham, Kathryn L.

    2012-01-01

    Arsenic exposure to humans is pervasive, and, increasingly, studies are revealing adverse health effects at ever lower doses. Drinking water is the main route of exposure for many individuals; however, food can be a significant source of arsenic to an individual, especially if their diet is rice-based. Infants are particularly susceptible to dietary exposure, since many first foods contain rice and they have a low body mass. Here we report on arsenic concentration and speciation in infant formulas and first foods. Speciation is essential for food analysis because of the much greater toxicity of inorganic arsenic species and the possibility that arsenic in food (unlike water) may be present in either inorganic or organic forms. Infant milk formulas were low in total arsenic (2.2–12.6 ng g−1, n=15). Non-dairy formulas were significantly higher in arsenic than dairy-based formulas. Arsenic in formula was almost exclusively inorganic and predominantly arsenic(V). Arsenic concentration in purees (n=41) and stage 3 foods (n=18) ranged from 0.3–22 ng g−1. Rice-fortified foods had significantly higher total arsenic concentrations than non rice-based foods. Again arsenic speciation was predominantly inorganic; arsenic(III) was the main species with lower concentrations of DMA and arsenic(V) also present. These data confirm that infants are exposed to arsenic via diet, and suggest that careful attention to diet choices may limit this. PMID:22701232

  16. Flight Dynamics Analysis Branch End of Fiscal Year 1999 Report

    NASA Technical Reports Server (NTRS)

    Stengle, Thomas; Flores-Amaya, Felipe

    1999-01-01

    This document summarizes the major activities and accomplishments carried out by the Goddard Space Flight Center (GSFC)'s Flight Dynamics Analysis Branch (FDAB), Code 572, in support of flight projects and technology development initiatives in Fiscal Year (FY) 1999. The document is intended to serve as both an introduction to the type of support carried out by the FDAB (Flight Dynamics Analysis Branch), as well as a concise reference summarizing key analysis results and mission experience derived from the various mission support roles assumed over the past year. The major accomplishments in the FDAB in FY99 were: 1) Provided flight dynamics support to the Lunar Prospector and TRIANA missions among a variety of spacecraft missions; 2) Sponsored the Flight Mechanics Symposium; 3) Supported the Consultative Committee for Space Data Systems (CCSDS) workshops; 4) Performed numerous analyses and studies for future missions; 5) Started the Flight Dynamics Analysis Branch Lab for in-house mission analysis and support; and 6) Complied with all requirements in support of GSFC IS09000 certification.

  17. Dynamic performances analysis of a real vehicle driving

    NASA Astrophysics Data System (ADS)

    Abdullah, M. A.; Jamil, J. F.; Salim, M. A.

    2015-12-01

    Vehicle dynamic is the effects of movement of a vehicle generated from the acceleration, braking, ride and handling activities. The dynamic behaviours are determined by the forces from tire, gravity and aerodynamic which acting on the vehicle. This paper emphasizes the analysis of vehicle dynamic performance of a real vehicle. Real driving experiment on the vehicle is conducted to determine the effect of vehicle based on roll, pitch, and yaw, longitudinal, lateral and vertical acceleration. The experiment is done using the accelerometer to record the reading of the vehicle dynamic performance when the vehicle is driven on the road. The experiment starts with weighing a car model to get the center of gravity (COG) to place the accelerometer sensor for data acquisition (DAQ). The COG of the vehicle is determined by using the weight of the vehicle. A rural route is set to launch the experiment and the road conditions are determined for the test. The dynamic performance of the vehicle are depends on the road conditions and driving maneuver. The stability of a vehicle can be controlled by the dynamic performance analysis.

  18. Extruder analysis, modeling, and dynamic matrix control

    SciTech Connect

    Sribuangam, D.

    1991-01-01

    The Modern Plastics extruder of the Material Science and Engineering Department is used to extrude high density polyethylene (Alathon 7040). Diameter sensor characterization is done due to the fiber positioning sensitivity of the sensor (Zimmer) and observed variations in the sensor signal. Detailed step test transfer function models are developed where the input variables are take-up speed, screw speed, gear pump speed, and die temperature set point. The output variables are die temperature, die pressure, end of the barrel temperature and pressure. A total of 18 transfer functions are obtained. The relationships between known periodic input variations and the output variations are analyzed by the power spectrum analysis. Due to the dominance of the draw resonance-like variation, the main control objective is to eliminate this variation. Results show that all control methods can handle set point tracking but achieve only a limited reduction in amplitude of the fiber diameter variation.

  19. Digital data processing system dynamic loading analysis

    NASA Technical Reports Server (NTRS)

    Lagas, J. J.; Peterka, J. J.; Tucker, A. E.

    1976-01-01

    Simulation and analysis of the Space Shuttle Orbiter Digital Data Processing System (DDPS) are reported. The mated flight and postseparation flight phases of the space shuttle's approach and landing test configuration were modeled utilizing the Information Management System Interpretative Model (IMSIM) in a computerized simulation modeling of the ALT hardware, software, and workload. System requirements simulated for the ALT configuration were defined. Sensitivity analyses determined areas of potential data flow problems in DDPS operation. Based on the defined system requirements and the sensitivity analyses, a test design is described for adapting, parameterizing, and executing the IMSIM. Varying load and stress conditions for the model execution are given. The analyses of the computer simulation runs were documented as results, conclusions, and recommendations for DDPS improvements.

  20. Patient-adaptive lesion metabolism analysis by dynamic PET images.

    PubMed

    Gao, Fei; Liu, Huafeng; Shi, Pengcheng

    2012-01-01

    Dynamic PET imaging provides important spatial-temporal information for metabolism analysis of organs and tissues, and generates a great reference for clinical diagnosis and pharmacokinetic analysis. Due to poor statistical properties of the measurement data in low count dynamic PET acquisition and disturbances from surrounding tissues, identifying small lesions inside the human body is still a challenging issue. The uncertainties in estimating the arterial input function will also limit the accuracy and reliability of the metabolism analysis of lesions. Furthermore, the sizes of the patients and the motions during PET acquisition will yield mismatch against general purpose reconstruction system matrix, this will also affect the quantitative accuracy of metabolism analyses of lesions. In this paper, we present a dynamic PET metabolism analysis framework by defining a patient adaptive system matrix to improve the lesion metabolism analysis. Both patient size information and potential small lesions are incorporated by simulations of phantoms of different sizes and individual point source responses. The new framework improves the quantitative accuracy of lesion metabolism analysis, and makes the lesion identification more precisely. The requirement of accurate input functions is also reduced. Experiments are conducted on Monte Carlo simulated data set for quantitative analysis and validation, and on real patient scans for assessment of clinical potential. PMID:23286175

  1. Operationalizing sustainability in urban coastal systems: a system dynamics analysis.

    PubMed

    Mavrommati, Georgia; Bithas, Kostas; Panayiotidis, Panayiotis

    2013-12-15

    We propose a system dynamics approach for Ecologically Sustainable Development (ESD) in urban coastal systems. A systematic analysis based on theoretical considerations, policy analysis and experts' knowledge is followed in order to define the concept of ESD. The principles underlying ESD feed the development of a System Dynamics Model (SDM) that connects the pollutant loads produced by urban systems' socioeconomic activities with the ecological condition of the coastal ecosystem that it is delineated in operational terms through key biological elements defined by the EU Water Framework Directive. The receiving waters of the Athens Metropolitan area, which bears the elements of typical high population density Mediterranean coastal city but which currently has also new dynamics induced by the ongoing financial crisis, are used as an experimental system for testing a system dynamics approach to apply the concept of ESD. Systems' thinking is employed to represent the complex relationships among the components of the system. Interconnections and dependencies that determine the potentials for achieving ESD are revealed. The proposed system dynamics analysis can facilitate decision makers to define paths of development that comply with the principles of ESD. PMID:24200010

  2. Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation.

    PubMed

    Rabosky, Daniel L; Santini, Francesco; Eastman, Jonathan; Smith, Stephen A; Sidlauskas, Brian; Chang, Jonathan; Alfaro, Michael E

    2013-01-01

    Several evolutionary theories predict that rates of morphological change should be positively associated with the rate at which new species arise. For example, the theory of punctuated equilibrium proposes that phenotypic change typically occurs in rapid bursts associated with speciation events. However, recent phylogenetic studies have found little evidence linking these processes in nature. Here we demonstrate that rates of species diversification are highly correlated with the rate of body size evolution across the 30,000+ living species of ray-finned fishes that comprise the majority of vertebrate biological diversity. This coupling is a general feature of fish evolution and transcends vast differences in ecology and body-plan organization. Our results may reflect a widespread speciational mode of character change in living fishes. Alternatively, these findings are consistent with the hypothesis that phenotypic 'evolvability'-the capacity of organisms to evolve-shapes the dynamics of speciation through time at the largest phylogenetic scales. PMID:23739623

  3. Trajectory analysis of the rotational dynamics of molecules

    SciTech Connect

    Petrov, S. V. Lokshtanov, S. E.

    2015-08-15

    A method for analysis of the rotational dynamics of molecular systems has been proposed on the basis of the calculation of the set of exact classical vibrational–rotational trajectories. It has been proposed to compose and to numerically solve the complete system of dynamic equations consisting of Hamilton’s equations and generalized Euler equations for an arbitrary system. The computer algebra system can be applied to automatize the process of derivation and subsequent solution of dynamic equations. The variation of the picture of known bifurcation in the rotational dynamics of symmetric triatomic hydride molecules with an increase in vibrational excitation has been studied within the proposed approach. It has been shown that manifestations of bifurcation completely disappear at a quite high level of vibrational excitations.

  4. A test of the chromosomal theory of ecotypic speciation in Anopheles gambiae.

    PubMed

    Manoukis, Nicholas C; Powell, Jeffrey R; Touré, Mahamoudou B; Sacko, Adama; Edillo, Frances E; Coulibaly, Mamadou B; Traoré, Sekou F; Taylor, Charles E; Besansky, Nora J

    2008-02-26

    The role of chromosomal inversions in speciation has long been of interest to evolutionists. Recent quantitative modeling has stimulated reconsideration of previous conceptual models for chromosomal speciation. Anopheles gambiae, the most important vector of human malaria, carries abundant chromosomal inversion polymorphism nonrandomly associated with ecotypes that mate assortatively. Here, we consider the potential role of paracentric inversions in promoting speciation in A. gambiae via "ecotypification," a term that refers to differentiation arising from local adaptation. In particular, we focus on the Bamako form, an ecotype characterized by low inversion polymorphism and fixation of an inversion, 2Rj, that is very rare or absent in all other forms of A. gambiae. The Bamako form has a restricted distribution by the upper Niger River and its tributaries that is associated with a distinctive type of larval habitat, laterite rock pools, hypothesized to be its optimal breeding site. We first present computer simulations to investigate whether the population dynamics of A. gambiae are consistent with chromosomal speciation by ecotypification. The models are parameterized using field observations on the various forms of A. gambiae that exist in Mali, West Africa. We then report on the distribution of larvae of this species collected from rock pools and more characteristic breeding sites nearby. Both the simulations and field observations support the thesis that speciation by ecotypification is occurring, or has occurred, prompting consideration of Bamako as an independent species. PMID:18287019

  5. Dynamic analysis of a gear drive system in aeroengine

    NASA Astrophysics Data System (ADS)

    Yuan, Xiangdong; Zhou, Chuanrong

    1993-04-01

    A new technique of structural dynamic analysis especially for analysis of a gear drive system has been developed, which combines the principle of substructure analysis with the idea of structure modification. A gear stiffness model of the degrees of the freedom of the structure node in which the gear relation exists has also been developed. It has the advantages of both the method of substructure analysis and vibration reanalysis of modified structure. The natural frequencies and modes calculated by the present program are in quite good agreement with the results calculated by FEM.

  6. Empirical analysis of online human dynamics

    NASA Astrophysics Data System (ADS)

    Zhao, Zhi-Dan; Zhou, Tao

    2012-06-01

    Patterns of human activities have attracted increasing academic interests, since the quantitative understanding of human behavior is helpful to uncover the origins of many socioeconomic phenomena. This paper focuses on behaviors of Internet users. Six large-scale systems are studied in our experiments, including the movie-watching in Netflix and MovieLens, the transaction in Ebay, the bookmark-collecting in Delicious, and the posting in FreindFeed and Twitter. Empirical analysis reveals some common statistical features of online human behavior: (1) The total number of user's actions, the user's activity, and the interevent time all follow heavy-tailed distributions. (2) There exists a strongly positive correlation between user's activity and the total number of user's actions, and a significantly negative correlation between the user's activity and the width of the interevent time distribution. We further study the rescaling method and show that this method could to some extent eliminate the different statistics among users caused by the different activities, yet the effectiveness depends on the data sets.

  7. Bayesian Analysis of Individual Level Personality Dynamics

    PubMed Central

    Cripps, Edward; Wood, Robert E.; Beckmann, Nadin; Lau, John; Beckmann, Jens F.; Cripps, Sally Ann

    2016-01-01

    A Bayesian technique with analyses of within-person processes at the level of the individual is presented. The approach is used to examine whether the patterns of within-person responses on a 12-trial simulation task are consistent with the predictions of ITA theory (Dweck, 1999). ITA theory states that the performance of an individual with an entity theory of ability is more likely to spiral down following a failure experience than the performance of an individual with an incremental theory of ability. This is because entity theorists interpret failure experiences as evidence of a lack of ability which they believe is largely innate and therefore relatively fixed; whilst incremental theorists believe in the malleability of abilities and interpret failure experiences as evidence of more controllable factors such as poor strategy or lack of effort. The results of our analyses support ITA theory at both the within- and between-person levels of analyses and demonstrate the benefits of Bayesian techniques for the analysis of within-person processes. These include more formal specification of the theory and the ability to draw inferences about each individual, which allows for more nuanced interpretations of individuals within a personality category, such as differences in the individual probabilities of spiraling. While Bayesian techniques have many potential advantages for the analyses of processes at the level of the individual, ease of use is not one of them for psychologists trained in traditional frequentist statistical techniques. PMID:27486415

  8. Bayesian Analysis of Individual Level Personality Dynamics.

    PubMed

    Cripps, Edward; Wood, Robert E; Beckmann, Nadin; Lau, John; Beckmann, Jens F; Cripps, Sally Ann

    2016-01-01

    A Bayesian technique with analyses of within-person processes at the level of the individual is presented. The approach is used to examine whether the patterns of within-person responses on a 12-trial simulation task are consistent with the predictions of ITA theory (Dweck, 1999). ITA theory states that the performance of an individual with an entity theory of ability is more likely to spiral down following a failure experience than the performance of an individual with an incremental theory of ability. This is because entity theorists interpret failure experiences as evidence of a lack of ability which they believe is largely innate and therefore relatively fixed; whilst incremental theorists believe in the malleability of abilities and interpret failure experiences as evidence of more controllable factors such as poor strategy or lack of effort. The results of our analyses support ITA theory at both the within- and between-person levels of analyses and demonstrate the benefits of Bayesian techniques for the analysis of within-person processes. These include more formal specification of the theory and the ability to draw inferences about each individual, which allows for more nuanced interpretations of individuals within a personality category, such as differences in the individual probabilities of spiraling. While Bayesian techniques have many potential advantages for the analyses of processes at the level of the individual, ease of use is not one of them for psychologists trained in traditional frequentist statistical techniques. PMID:27486415

  9. Theoretical analysis of dynamic processes for interacting molecular motors

    NASA Astrophysics Data System (ADS)

    Teimouri, Hamid; Kolomeisky, Anatoly B.; Mehrabiani, Kareem

    2015-02-01

    Biological transport is supported by the collective dynamics of enzymatic molecules that are called motor proteins or molecular motors. Experiments suggest that motor proteins interact locally via short-range potentials. We investigate the fundamental role of these interactions by carrying out an analysis of a new class of totally asymmetric exclusion processes, in which interactions are accounted for in a thermodynamically consistent fashion. This allows us to explicitly connect microscopic features of motor proteins with their collective dynamic properties. A theoretical analysis that combines various mean-field calculations and computer simulations suggests that the dynamic properties of molecular motors strongly depend on the interactions, and that the correlations are stronger for interacting motor proteins. Surprisingly, it is found that there is an optimal strength of interactions (weak repulsion) that leads to a maximal particle flux. It is also argued that molecular motor transport is more sensitive to attractive interactions. Applications of these results for kinesin motor proteins are discussed.

  10. Dynamic analysis of spur gears using computer program DANST

    NASA Technical Reports Server (NTRS)

    Oswald, Fred B.; Lin, Hsiang Hsi; Liou, Chuen-Huei; Valco, Mark J.

    1993-01-01

    DANST is a computer program for static and dynamic analysis of spur gear systems. The program can be used for parametric studies to predict the effect on dynamic load and tooth bending stress of spur gears due to operating speed, torque, stiffness, damping, inertia, and tooth profile. DANST performs geometric modeling and dynamic analysis for low- or high-contact-ratio spur gears. DANST can simulate gear systems with contact ratio ranging from one to three. It was designed to be easy to use, and it is extensively documented by comments in the source code. This report describes the installation and use of DANST. It covers input data requirements and presents examples. The report also compares DANST predictions for gear tooth loads and bending stress to experimental and finite element results.

  11. Bifurcation analysis of bubble dynamics in fluidized beds

    SciTech Connect

    Blomgren, Peter; Palacios, Antonio; Zhu, Bing; Daw, C Stuart; FINNEY, Charles E A; Halow, John; Pannala, Sreekanth

    2007-01-01

    We use a low-dimensional, agent-based bubble model to study the changes in the global dynamics of fluidized beds in response to changes in the frequency of the rising bubbles. The computationally based bifurcation analysis shows that at low frequencies, the global dynamics is attracted towards a fixed point since the bubbles interact very little with one another. As the frequency of injection increases, however, the global dynamics undergoes a series of bifurcations to new behaviors that include highly periodic orbits, chaotic attractors, and intermittent behavior between periodic orbits and chaotic sets. Using methods from time-series analysis, we are able to approximate nonlinear models that allow for long-term predictions and the possibility of developing control algorithms.

  12. Measurement of mercury species in whole blood using speciated isotope dilution methodology integrated with microwave-enhanced solubilization and spike equilibration, headspace-solid-phase microextraction, and GC-ICP-MS analysis.

    PubMed

    Rahman, G M Mizanur; Wolle, Mesay Mulugeta; Fahrenholz, Timothy; Kingston, H M Skip; Pamuku, Matt

    2014-06-17

    A biomonitoring method was developed for the determination of inorganic-, methyl-, and ethylmercury (Hg(2+), CH3Hg(+), and C2H5Hg(+), respectively) in whole blood by triple-spiking speciated isotope dilution mass spectrometry (SIDMS) using headspace (HS) solid-phase microextraction (SPME) in combination with gas chromatographic (GC) separation and inductively coupled plasma mass spectrometric (ICP-MS) detection. After spiking the blood sample with isotopically enriched analogues of the analytes ((199)Hg(2+), CH3(200)Hg(+) and C2H5(201)Hg(+)), the endogenous Hg species were solubilized in 2.0 mol L(-1) HNO3 and equilibrated with the spikes using a microwave-enhanced protocol. The microwaved sample was treated with a 1% (w/v) aqueous solution of sodium tetrapropylborate (buffered to pH 5.2), and the propylated Hg species were sampled in the HS using a Carboxen/polydimethylsiloxane-coated SPME fiber. The extracted species were thermally desorbed from the fiber in the GC injection port and determined by GC-ICP-MS. The analytes were quantified, with simultaneous correction for their method-induced transformation, on the basis of the mathematical relationship in triple-spiking SIDMS. The method was validated using a bovine blood standard reference material (SRM 966, Level 2). Analysis of human blood samples demonstrated the accuracy and reproducibility of the method, which can detect the Hg species down to 30 pg g(-1) in blood. The validity of the analytical results found for the blood samples was demonstrated using mass balance by comparing the sum of the concentrations of the individual Hg species with the total Hg in the corresponding samples; the latter was determined by isotope dilution mass spectrometry (IDMS) after decomposing the blood using EPA Method 3052 with single-spiking. PMID:24845130

  13. Onsite analysis of data from the Dynamics Explorer (DE) spacecraft

    NASA Technical Reports Server (NTRS)

    Fung, Shing F.; Candey, Robert M.; Humphreys, Josephine N.

    1992-01-01

    The tasks performed by ARC Professional Services Group, Inc. fell into five parts: (1) dynamics explorer (DE) data analysis and modeling; (2) DE project support; (3) chemical release observations support; (4) VLF emissions and plasma instability studies; and (5) modeling of planetary radio emissions. Some recommendations for future considerations are also addressed.

  14. An Efficient Crankshaft Dynamic Analysis Using Substructuring with Ritz Vectors

    NASA Astrophysics Data System (ADS)

    MOURELATOS, Z. P.

    2000-11-01

    A structural analysis using dynamic substructuring with Ritz vectors is presented for predicting the dynamic response of an engine crankshaft, based on the finite-element method. A two-level dynamic substructuring is performed using a set of load-dependent Ritz vectors. The rotating crankshaft is properly coupled with the non-rotating, compliant engine block. The block compliance is represented by a distributed linear elastic foundation at each main bearing location. The stiffness of the elastic foundation can be different in the vertical and horizontal planes, thereby considering the anisotropy of the engine block compliance with respect to the crankshaft rotation. The analysis accounts for the kinematic non-linearity resulting from the crankangle-dependent circumferential contact location between each journal and the corresponding bore of the engine block. Crankshaft “bent” and block “misboring” effects due to manufacturing imperfections are considered in the analysis. The superior accuracy and reduced computational effort of the present method as compared with the equivalent superelement analysis in MSC/NASTRAN, are demonstrated using the free and forced vibrations of a slender cylindrical beam and free vibrations of a four-cylinder engine crankshaft. Subsequently, the accuracy of the present method in calculating the dynamic response of engine crankshafts is shown through comparisons between the analytical predictions and experimental results for the torsional vibrations of an in-line five cylinder engine and the bending vibrations of the crankshaft-flywheel assembly of a V6 engine.

  15. SPAR improved structure-fluid dynamic analysis capability, phase 2

    NASA Technical Reports Server (NTRS)

    Pearson, M. L.

    1984-01-01

    An efficient and general method of analyzing a coupled dynamic system of fluid flow and elastic structures is investigated. The improvement of Structural Performance Analysis and Redesign (SPAR) code is summarized. All error codes are documented and the SPAR processor/subroutine cross reference is included.

  16. Bayesian Shrinkage Analysis of Quantitative Trait Loci for Dynamic Traits

    PubMed Central

    Yang, Runqing; Xu, Shizhong

    2007-01-01

    Many quantitative traits are measured repeatedly during the life of an organism. Such traits are called dynamic traits. The pattern of the changes of a dynamic trait is called the growth trajectory. Studying the growth trajectory may enhance our understanding of the genetic architecture of the growth trajectory. Recently, we developed an interval-mapping procedure to map QTL for dynamic traits under the maximum-likelihood framework. We fit the growth trajectory by Legendre polynomials. The method intended to map one QTL at a time and the entire QTL analysis involved scanning the entire genome by fitting multiple single-QTL models. In this study, we propose a Bayesian shrinkage analysis for estimating and mapping multiple QTL in a single model. The method is a combination between the shrinkage mapping for individual quantitative traits and the Legendre polynomial analysis for dynamic traits. The multiple-QTL model is implemented in two ways: (1) a fixed-interval approach where a QTL is placed in each marker interval and (2) a moving-interval approach where the position of a QTL can be searched in a range that covers many marker intervals. Simulation study shows that the Bayesian shrinkage method generates much better signals for QTL than the interval-mapping approach. We propose several alternative methods to present the results of the Bayesian shrinkage analysis. In particular, we found that the Wald test-statistic profile can serve as a mechanism to test the significance of a putative QTL. PMID:17435239

  17. A Model of Practice in Special Education: Dynamic Ecological Analysis

    ERIC Educational Resources Information Center

    Hannant, Barbara; Lim, Eng Leong; McAllum, Ruth

    2010-01-01

    Dynamic Ecological Analysis (DEA) is a model of practice which increases a teams' efficacy by enabling the development of more effective interventions through collaboration and collective reflection. This process has proved to be useful in: a) clarifying thinking and problem-solving, b) transferring knowledge and thinking to significant parties,…

  18. Potential applications of computational fluid dynamics to biofluid analysis

    NASA Technical Reports Server (NTRS)

    Kwak, D.; Chang, J. L. C.; Rogers, S. E.; Rosenfeld, M.; Kwak, D.

    1988-01-01

    Computational fluid dynamics was developed to the stage where it has become an indispensable part of aerospace research and design. In view of advances made in aerospace applications, the computational approach can be used for biofluid mechanics research. Several flow simulation methods developed for aerospace problems are briefly discussed for potential applications to biofluids, especially to blood flow analysis.

  19. Speciation and phylogeography of giant petrels Macronectes.

    PubMed

    Techow, N M S M; O'Ryan, C; Phillips, R A; Gales, R; Marin, M; Patterson-Fraser, D; Quintana, F; Ritz, M S; Thompson, D R; Wanless, R M; Weimerskirch, H; Ryan, P G

    2010-02-01

    We examine global phylogeography of the two forms of giant petrel Macronectes spp. Although previously considered to be a single taxon, and despite debate over the status of some populations and the existence of minimal genetic data (one mitochondrial cytochrome b sequence per form), the current consensus based on morphology is that there are two species, Northern Giant Petrel M. halli and Southern Giant Petrel M. giganteus. This study examined genetic variation at cytochrome b as well as six microsatellite loci in giant petrels from 22 islands, representing most island groups at which the two species breed. Both markers support separate species status, although sequence divergence in cytochrome b was only 0.42% (corrected). Divergence was estimated to have occurred approximately 0.2mya, but with some colonies apparently separated for longer (up to 0.5 my). Three clades were found within giant petrels, which separated approximately 0.7mya, with the Southern Giant Petrel paraphyletic to a monophyletic Northern Giant Petrel. There was evidence of past fragmentation during the Pleistocene, with subsequent secondary contact within Southern Giant Petrels. The analysis also suggested a period of past population expansion that corresponded roughly to the timing of speciation and the separation of an ancestral giant petrel population from the fulmar Fulmarus clade. PMID:19755164

  20. Selenium speciation in flue desulfurization residues.

    PubMed

    Zhong, Liping; Cao, Yan; Li, Wenying; Xie, Kechang; Pan, Wei-Ping

    2011-01-01

    Flue gas from coal combustion contains significant amounts of volatile selenium (Se). The capture of Se in the flue gas desulfurization (FGD) scrubber unit has resulted in a generation of metal-laden residues. It is important to determine Se speciation to understand the environmental impact of its disposal. A simple method has been developed for selective inorganic Se(IV), Se(VI) and organic Se determination in the liquid-phase FGD residues by hydride generation atomic fluorescence spectrometry (AFS). It has been determined that Se(IV), Se(VI) and organic Se can be accurately determined with detection limits (DL) of 0.05, 0.06 and 0.06 microg/L, respectively. The accuracy of the proposed method was evaluated by analyzing the certified reference material, NIST CRM 1632c, and also by analyzing spiked tap-water samples. Analysis indicates that the concentration of Se is high in FGD liquid residues and primarily exists in a reduced state as selenite (Se(IV)). The toxicity of Se(IV) is the strongest of all Se species. Flue gas desulfurization residues pose a serious environmental risk. PMID:21476358

  1. Dynamics in non-globally-hyperbolic static spacetimes: II. General analysis of prescriptions for dynamics

    NASA Astrophysics Data System (ADS)

    Ishibashi, Akihiro; Wald, Robert M.

    2003-08-01

    It was previously shown by one of us that in any static, non-globally-hyperbolic, spacetime, it is always possible to define a sensible dynamics for a Klein Gordon scalar field. The prescription proposed for doing so involved viewing the spatial derivative part, A, of the wave operator as an operator on a certain L2 Hilbert space Script H and then defining a positive, self-adjoint operator on Script H by taking the Friedrichs extension (or other positive extension) of A. However, this analysis left open the possibility that there could be other inequivalent prescriptions of a completely different nature that might also yield satisfactory definitions of the dynamics of a scalar field. We show here that this is not the case. Specifically, we show that if the dynamics agrees locally with the dynamics defined by the wave equation, if it admits a suitable conserved energy and if it satisfies certain other specified conditions, then it must correspond to the dynamics defined by choosing some positive, self-adjoint extension of A on Script H. Thus, subject to our requirements, the previously given prescription is the only possible way of defining the dynamics of a scalar field in a static, non-globally-hyperbolic, spacetime. In a subsequent paper, this result will be applied to the analysis of scalar, electromagnetic and gravitational perturbations of anti-de Sitter spacetime. By doing so, we will determine all possible choices of boundary conditions at infinity in anti-de Sitter spacetime that give rise to sensible dynamics.

  2. Major component analysis of dynamic networks of physiologic organ interactions

    NASA Astrophysics Data System (ADS)

    Liu, Kang K. L.; Bartsch, Ronny P.; Ma, Qianli D. Y.; Ivanov, Plamen Ch

    2015-09-01

    The human organism is a complex network of interconnected organ systems, where the behavior of one system affects the dynamics of other systems. Identifying and quantifying dynamical networks of diverse physiologic systems under varied conditions is a challenge due to the complexity in the output dynamics of the individual systems and the transient and nonlinear characteristics of their coupling. We introduce a novel computational method based on the concept of time delay stability and major component analysis to investigate how organ systems interact as a network to coordinate their functions. We analyze a large database of continuously recorded multi-channel physiologic signals from healthy young subjects during night-time sleep. We identify a network of dynamic interactions between key physiologic systems in the human organism. Further, we find that each physiologic state is characterized by a distinct network structure with different relative contribution from individual organ systems to the global network dynamics. Specifically, we observe a gradual decrease in the strength of coupling of heart and respiration to the rest of the network with transition from wake to deep sleep, and in contrast, an increased relative contribution to network dynamics from chin and leg muscle tone and eye movement, demonstrating a robust association between network topology and physiologic function.

  3. Improved dynamic analysis method using load-dependent Ritz vectors

    NASA Technical Reports Server (NTRS)

    Escobedo-Torres, J.; Ricles, J. M.

    1993-01-01

    The dynamic analysis of large space structures is important in order to predict their behavior under operating conditions. Computer models of large space structures are characterized by having a large number of degrees of freedom, and the computational effort required to carry out the analysis is very large. Conventional methods of solution utilize a subset of the eigenvectors of the system, but for systems with many degrees of freedom, the solution of the eigenproblem is in many cases the most costly phase of the analysis. For this reason, alternate solution methods need to be considered. It is important that the method chosen for the analysis be efficient and that accurate results be obtainable. It is important that the method chosen for the analysis be efficient and that accurate results be obtainable. The load dependent Ritz vector method is presented as an alternative to the classical normal mode methods for obtaining dynamic responses of large space structures. A simplified model of a space station is used to compare results. Results show that the load dependent Ritz vector method predicts the dynamic response better than the classical normal mode method. Even though this alternate method is very promising, further studies are necessary to fully understand its attributes and limitations.

  4. Dynamic Systems Analysis for Turbine Based Aero Propulsion Systems

    NASA Technical Reports Server (NTRS)

    Csank, Jeffrey T.

    2016-01-01

    The aircraft engine design process seeks to optimize the overall system-level performance, weight, and cost for a given concept. Steady-state simulations and data are used to identify trade-offs that should be balanced to optimize the system in a process known as systems analysis. These systems analysis simulations and data may not adequately capture the true performance trade-offs that exist during transient operation. Dynamic systems analysis provides the capability for assessing the dynamic tradeoffs at an earlier stage of the engine design process. The dynamic systems analysis concept, developed tools, and potential benefit are presented in this paper. To provide this capability, the Tool for Turbine Engine Closed-loop Transient Analysis (TTECTrA) was developed to provide the user with an estimate of the closed-loop performance (response time) and operability (high pressure compressor surge margin) for a given engine design and set of control design requirements. TTECTrA along with engine deterioration information, can be used to develop a more generic relationship between performance and operability that can impact the engine design constraints and potentially lead to a more efficient engine.

  5. Integrative Analysis of Metabolic Models – from Structure to Dynamics

    PubMed Central

    Hartmann, Anja; Schreiber, Falk

    2015-01-01

    The characterization of biological systems with respect to their behavior and functionality based on versatile biochemical interactions is a major challenge. To understand these complex mechanisms at systems level modeling approaches are investigated. Different modeling formalisms allow metabolic models to be analyzed depending on the question to be solved, the biochemical knowledge and the availability of experimental data. Here, we describe a method for an integrative analysis of the structure and dynamics represented by qualitative and quantitative metabolic models. Using various formalisms, the metabolic model is analyzed from different perspectives. Determined structural and dynamic properties are visualized in the context of the metabolic model. Interaction techniques allow the exploration and visual analysis thereby leading to a broader understanding of the behavior and functionality of the underlying biological system. The System Biology Metabolic Model Framework (SBM2 – Framework) implements the developed method and, as an example, is applied for the integrative analysis of the crop plant potato. PMID:25674560

  6. Dynamic analysis of large suspended LMFBR reactor vessels

    SciTech Connect

    Ma, D.C.; Gvildys, J.; Chang, Y.W.

    1983-01-01

    Large breeder reactor vessels are often designed under the top-suspended condition. Since the vessel contains a large volume of liquid sodium as reactor coolant, the structural integrity of the vessel bottom head and its effect on the vessel dynamic response are of great importance to the safety and reliability of the reactor systems. This paper presents a dynamic analysis of the large suspended reactor vessel subjected to the horizontal earthquake excitation with the emphasis on the effect of bottom head vibration on fluid pressure and sloshing response. Unlike the conventional lumped mass method, the present analysis treats the liquid sodium as a continuum medium. As a result, the important effects ignored in the lumped mass method such as fluid coupling, fluid-structure interaction, interaction between sloshing and vessel vibration, etc. can be accounted into the analysis.

  7. Flight Dynamics Analysis Branch End of Fiscal Year 2005 Report

    NASA Technical Reports Server (NTRS)

    2006-01-01

    This report summarizes the major activities and accomplishments carried out by the Flight Dynamics Analysis Branch (FDAB), Code 595, in support of flight projects and technology development initiatives in Fiscal Year (FY) 2005. The report is intended to serve as a summary of the type of support carried out by the FDAB, as well as a concise reference of key accomplishments and mission experience derived from the various mission support roles. The primary focus of the FDAB is to provide expertise in the disciplines of flight dynamics including spacecraft navigation (autonomous and ground based), spacecraft trajectory design and maneuver planning, attitude analysis, attitude determination and sensor calibration, and attitude control subsystem (ACS) analysis and design. The FDAB currently provides support for missions and technology development projects involving NASA, other government agencies, academia, and private industry.

  8. Nonlinear dynamical analysis of turbulence in a stable cloud layer

    SciTech Connect

    Palmer, A.J. )

    1995-03-01

    An eight mode truncated spectral model based on Burgers' approximation to the one-dimensional Navier--Stokes equations is used to compute the Lyapunov dimension of the dynamical attractor for turbulence in a stable cloud layer. The model results are compared with the correlation dimension obtained earlier from a time series of radar Doppler and reflectivity signals from a turbulent layer in a marine stratus cloud. The analysis supports a weak coupling explanation for the lower correlation dimension found for the reflectivity time series compared with that for the Doppler time series. Turbulent Prandtl number emerges from the analysis as a flow parameter which can enlarge the dimension of the model's dynamical attractor, but the attractor dimension computed for the model remains lower than the radar Doppler correlation dimension. Linear stability analysis of the model's equilibrium states suggests that a nontruncated version of the model will possess an attractor which is also of lower dimension than the radar Doppler correlation dimension.

  9. Flight Dynamics Analysis Branch End of Fiscal Year 2004 Report

    NASA Technical Reports Server (NTRS)

    DeLion, Anne (Editor); Stengle, Thomas

    2005-01-01

    This report summarizes the major activities and accomplishments carried out by the Flight Dynamics Analysis Branch (FDAB), Code 595, in support of flight projects and technology development initiatives in Fiscal Year (FY) 2004. The report is intended to serve as a summary of the type of support carried out by the FDAB, as well as a concise reference of key accomplishments and mission experience derived from the various mission support roles. The primary focus of the FDAB is to provide expertise in the disciplines of flight dynamics including spacecraft navigation (autonomous and ground based); spacecraft trajectory design and maneuver planning; attitude analysis; attitude determination and sensor calibration; and attitude control subsystem (ACS) analysis and design. The FDAB currently provides support for missions and technology development projects involving NASA, other government agencies, academia, and private industry.

  10. Flight Dynamics Analysis Branch End of Fiscal Year 1999 Report

    NASA Technical Reports Server (NTRS)

    Stengle, T.; Flores-Amaya, F.

    2000-01-01

    This report summarizes the major activities and accomplishments carried out by the Flight Dynamics Analysis Branch (FDAB), Code 572, in support of flight projects and technology development initiatives in Fiscal Year (FY) 1999. The report is intended to serve as a summary of the type of support carried out by the FDAB, as well as a concise reference of key analysis results and mission experience derived from the various mission support roles. The primary focus of the FDAB is to provide expertise in the discipline of flight dynamics, which involves spacecraft trajectory (orbit) and attitude analysis, as well as orbit and attitude determination and control. The FDAB currently provides support for missions involving NASA, government, university, and commercial space missions, at various stages in the mission life cycle.

  11. Final Report for Dynamic Models for Causal Analysis of Panel Data. Dynamic Analysis of Event Histories. Part III, Chapter 1.

    ERIC Educational Resources Information Center

    Tuma, Nancy Brandon; Hannan, Michael T.

    The document, part of a series of chapters described in SO 011 759, examines sociological research methods for the study of change. The advantages and procedures for dynamic analysis of event-history data (data giving the number, timing, and sequence of changes in a categorical dependent variable) are considered. The authors argue for grounding…

  12. Dynamic heave-pitch analysis of air cushion landing systems

    NASA Technical Reports Server (NTRS)

    Captain, K. M.; Boghani, A. B.; Wormley, D. N.

    1975-01-01

    A program to develop analytical tools for evaluating the dynamic performance of Air Cushion Landing Systems (ACLS) is described. The heave (vertical) motion of the ACLS was analyzed, and the analysis was extended to cover coupled heave-pitch motions. The mathematical models developed are based on a fundamental analysis of the body dynamics and fluid mechanics of the aircraft-cushion-runway interaction. The air source characteristics, flow losses in the feeding ducts, trunk and cushion, the effects of fluid compressibility, and dynamic trunk deflections, including ground contact are considered. A computer program, based on the heave-pitch analysis, was developed to simulate the dynamic behavior of an ACLS during landing impact and taxi over an irregular runway. The program outputs include ACLS motions, loadings, pressures, and flows as a function of time. To illustrate program use, three basic types of simulations were carried out. The results provide an initial indication of ACLS performance during (1) a static drop, (2) landing impact, and (3) taxi over a runway irregularity.

  13. Dynamic path analysis in life-course epidemiology.

    PubMed

    Gamborg, Michael; Jensen, Gorm Boje; Sørensen, Thorkild I A; Andersen, Per Kragh

    2011-05-15

    Life-course epidemiology seeks to better understand the mechanisms that lead to the development of chronic diseases. An example is the mechanism leading from body size to coronary heart disease (CHD); one way to acquire a better understanding of this mechanism is to investigate to what extent it works through other risk factors. In this paper, the dynamic path analysis model is presented as a tool to analyze these dynamic mechanisms in life-course epidemiology. A key feature of dynamic path analysis is its ability to decompose the total effect of a risk factor into a direct effect (not mediated by other variables) and indirect effects (mediated through other variables). This is illustrated by examining the associations between repeated measurements of body mass index (BMI) and systolic blood pressure (SBP) and the risk of CHD in a sample of Danish men between 1976 and 2006. The effect of baseline BMI on the risk of CHD is decomposed into a direct effect and indirect effects going through later BMI, concurrent SBP, or later SBP. In conclusion, dynamic path analysis is a flexible tool that by the decomposition of effects can be used to increase the understanding of mechanisms that underlie the etiology of chronic disease. PMID:21415031

  14. Propellant Slosh Analysis for the Solar Dynamics Observatory

    NASA Technical Reports Server (NTRS)

    Mason, Paul A. C.; Starin, Scott R.

    2005-01-01

    The Solar Dynamics Observatory (SDO) mission, part of the Living With a Star program, is a geosynchronous satellite with tight pointing requirements. Due to a large amount of liquid propellant, a detailed slosh analysis is required to ensure the tight pointing budget can be satisfied. Much of the high fidelity slosh analysis and simulation has been performed via computational fluid dynamics. Even though this method of simulation is very accurate, it requires significant computational effort and specialized knowledge, limiting the ability of the SDO project to access fluid dynamics simulations at will. Furthermore, it is very difficult to incorporate most of these models into simulations of the overall spacecraft and its environment. Ultimately, the effects of the propellant slosh on the attitude stability and pointing performance of the entire spacecraft are of great interest to attitude control engineers. Equivalent mechanical models, such as models that approximate the fluid slosh effects by analogy to the movements of a point-mass pendulum, are important tools in simulating propellant slosh dynamics as part of the entire attitude determination and control system. This paper describes some of the current methods used to analyze and model slosh. It focuses on equivalent mechanical models and their incorporation into control-based analysis tools such as Simulink. The SDO mission is used as the case study for this work.

  15. Dynamical analysis of sea-breeze hodograph rotation in Sardinia

    NASA Astrophysics Data System (ADS)

    Moisseeva, N.; Steyn, D. G.

    2014-09-01

    This study investigates the diurnal evolution of sea-breeze rotation over an island in the mid-latitudes. Earlier research on sea-breezes in Sardinia shows that the onshore winds around various coasts of the island exhibit both the theoretically predicted clockwise rotation as well as seemingly anomalous anti-clockwise rotation. A non-hydrostatic fully compressible numerical model (WRF) is used to simulate wind fields on and around the island on previously-studied sea-breeze days and is shown to accurately capture the circulation on all coasts. Diurnal rotation of wind is examined and patterns of clockwise and anti-clockwise rotation are identified. A dynamical analysis is performed by extracting individual forcing terms from the horizontal momentum equations. Analysis of several regions around the island shows that the direction of rotation is a result of a complex interaction between near-surface and synoptic pressure gradient, Coriolis and advection forcings. An idealized simulation is performed over an artificial island with dramatically simplified topography, yet similar dimensions and latitude to Sardinia. Dynamical analysis of the idealized case reveals a rather different pattern of hodograph rotation to the real Sardinia, yet similar underlying dynamics. The research provides new insights into the dynamics underlying sea-breeze hodograph rotation, especially in coastal zones with complex topography and/or coastline.

  16. Dynamical analysis of sea-breeze hodograph rotation in Sardinia

    NASA Astrophysics Data System (ADS)

    Moisseeva, N.; Steyn, D. G.

    2014-12-01

    This study investigates the diurnal evolution of sea-breeze (SB) rotation over an island at the middle latitudes. Earlier research on sea breezes in Sardinia shows that the onshore winds around various coasts of the island exhibit both the theoretically predicted clockwise rotation as well as seemingly anomalous anticlockwise rotation. A non-hydrostatic fully compressible numerical model (WRF) is used to simulate wind fields on and around the island on previously studied sea-breeze days, and is shown to capture the circulation on all coasts accurately. Diurnal rotation of wind is examined, and patterns of clockwise and anticlockwise rotation are identified. A dynamical analysis is performed by extracting individual forcing terms from the horizontal momentum equations. Analysis of several regions around the island shows that the direction of rotation is a result of a complex interaction between near-surface and synoptic pressure gradient, Coriolis and advection forcings. An idealized simulation is performed over an artificial island with dramatically simplified topography yet similar dimensions and latitude to Sardinia. Dynamical analysis of the idealized case reveals a rather different pattern of hodograph rotation to the real Sardinia, yet similar underlying dynamics. The research provides new insights into the dynamics underlying sea-breeze hodograph rotation, especially in coastal zones with a complex topography and/or coastline.

  17. Dynamic Characteristics Analysis of Analogue Networks Design Process

    NASA Astrophysics Data System (ADS)

    Zemliak, Alexander M.

    The process of designing analogue circuits is formulated as a controlled dynamic system. For analysis of such system's properties it is suggested to use the concept of Lyapunov's function for a dynamic system. Various forms of Lyapunov's function are suggested. Analyzing the behavior of Lyapunov's function and its first derivative allowed us to determine significant correlation between this function's properties and processor time used to design the circuit. Numerical results prove the possibility of forecasting the behavior of various designing strategies and processor time based on the properties of Lyapunov's function for the process of designing the circuit.

  18. Multifractal analysis of dynamic infrared imaging of breast cancer

    NASA Astrophysics Data System (ADS)

    Gerasimova, E.; Audit, B.; Roux, S. G.; Khalil, A.; Argoul, F.; Naimark, O.; Arneodo, A.

    2013-12-01

    The wavelet transform modulus maxima (WTMM) method was used in a multifractal analysis of skin breast temperature time-series recorded using dynamic infrared (IR) thermography. Multifractal scaling was found for healthy breasts as the signature of a continuous change in the shape of the probability density function (pdf) of temperature fluctuations across time scales from \\sim0.3 to 3 s. In contrast, temperature time-series from breasts with malignant tumors showed homogeneous monofractal temperature fluctuations statistics. These results highlight dynamic IR imaging as a very valuable non-invasive technique for preliminary screening in asymptomatic women to identify those with risk of breast cancer.

  19. Interactive Finite Elements for General Engine Dynamics Analysis

    NASA Technical Reports Server (NTRS)

    Adams, M. L.; Padovan, J.; Fertis, D. G.

    1984-01-01

    General nonlinear finite element codes were adapted for the purpose of analyzing the dynamics of gas turbine engines. In particular, this adaptation required the development of a squeeze-film damper element software package and its implantation into a representative current generation code. The ADINA code was selected because of prior use of it and familiarity with its internal structure and logic. This objective was met and the results indicate that such use of general purpose codes is viable alternative to specialized codes for general dynamics analysis of engines.

  20. Analysis of motion features for molecular dynamics simulation of proteins

    NASA Astrophysics Data System (ADS)

    Kamada, Mayumi; Toda, Mikito; Sekijima, Masakazu; Takata, Masami; Joe, Kazuki

    2011-01-01

    Recently, a new method for time series analysis using the wavelet transformation has been proposed by Sakurai et al. We apply it to molecular dynamics simulation of Thermomyces lanuginosa lipase (TLL). Introducing indexes to characterize collective motion of the protein, we have obtained the following two results. First, time evolution of the collective motion involves not only the dynamics within a single potential well but also takes place wandering around multiple conformations. Second, correlation of the collective motion between secondary structures shows that collective motion exists involving multiple secondary structures. We discuss future prospects of our study involving 'disordered proteins'.

  1. Dynamic impact analysis of the M1 105mm projectile

    SciTech Connect

    Walls, J.C.; Webb, D.S.

    1993-06-01

    Evaluation of the effects of {open_quotes}rough-handling{close_quotes}-induced stresses in the nose region of a 105mm artillery projectile was performed to determine if these stresses could have contributed to the premature explosion of a projectile during a Desert Shield training mission of the 101st Army Airborne in Saudi Arabia. The rough-handling evaluations were simulated by dynamic impact analysis. It was concluded that the combined residual stress and dynamic impact-induced stress would not be of sufficient magnitude to cause cracking of the projectile in the nose region.

  2. Dynamic impact analysis of the M1 105mm projectile

    SciTech Connect

    Walls, J.C.; Webb, D.S.

    1993-06-01

    Evaluation of the effects of [open quotes]rough-handling[close quotes]-induced stresses in the nose region of a 105mm artillery projectile was performed to determine if these stresses could have contributed to the premature explosion of a projectile during a Desert Shield training mission of the 101st Army Airborne in Saudi Arabia. The rough-handling evaluations were simulated by dynamic impact analysis. It was concluded that the combined residual stress and dynamic impact-induced stress would not be of sufficient magnitude to cause cracking of the projectile in the nose region.

  3. Dynamic analysis using superelements for a large helicopter model

    NASA Technical Reports Server (NTRS)

    Patel, M. P.; Shah, L. C.

    1978-01-01

    Using superelements (substructures), modal and frequency response analysis was performed for a large model of the Advanced Attack Helicopter developed for the U.S. Army. Whiffletree concept was employed so that the residual structure along with the various superelements could be represented as beam-like structures for economical and accurate dynamic analysis. A very large DMAP alter to the rigid format was developed so that the modal analysis, the frequency response, and the strain energy in each component could be computed in the same run.

  4. Generalized five-dimensional dynamic and spectral factor analysis

    SciTech Connect

    El Fakhri, Georges; Sitek, Arkadiusz; Zimmerman, Robert E.; Ouyang Jinsong

    2006-04-15

    We have generalized the spectral factor analysis and the factor analysis of dynamic sequences (FADS) in SPECT imaging to a five-dimensional general factor analysis model (5D-GFA), where the five dimensions are the three spatial dimensions, photon energy, and time. The generalized model yields a significant advantage in terms of the ratio of the number of equations to that of unknowns in the factor analysis problem in dynamic SPECT studies. We solved the 5D model using a least-squares approach. In addition to the traditional non-negativity constraints, we constrained the solution using a priori knowledge of both time and energy, assuming that primary factors (spectra) are Gaussian-shaped with full-width at half-maximum equal to gamma camera energy resolution. 5D-GFA was validated in a simultaneous pre-/post-synaptic dual isotope dynamic phantom study where {sup 99m}Tc and {sup 123}I activities were used to model early Parkinson disease studies. 5D-GFA was also applied to simultaneous perfusion/dopamine transporter (DAT) dynamic SPECT in rhesus monkeys. In the striatal phantom, 5D-GFA yielded significantly more accurate and precise estimates of both primary {sup 99m}Tc (bias=6.4%{+-}4.3%) and {sup 123}I (-1.7%{+-}6.9%) time activity curves (TAC) compared to conventional FADS (biases=15.5%{+-}10.6% in {sup 99m}Tc and 8.3%{+-}12.7% in {sup 123}I, p<0.05). Our technique was also validated in two primate dynamic dual isotope perfusion/DAT transporter studies. Biases of {sup 99m}Tc-HMPAO and {sup 123}I-DAT activity estimates with respect to estimates obtained in the presence of only one radionuclide (sequential imaging) were significantly lower with 5D-GFA (9.4%{+-}4.3% for {sup 99m}Tc-HMPAO and 8.7%{+-}4.1% for {sup 123}I-DAT) compared to biases greater than 15% for volumes of interest (VOI) over the reconstructed volumes (p<0.05). 5D-GFA is a novel and promising approach in dynamic SPECT imaging that can also be used in other modalities. It allows accurate and precise

  5. Chromatographic speciation of Cr(III)-species, inter-species equilibrium isotope fractionation and improved chemical purification strategies for high-precision isotope analysis

    PubMed Central

    Larsen, K.K.; Wielandt, D.; Schiller, M.; Bizzarro, M.

    2016-01-01

    Chromatographic purification of chromium (Cr), which is required for high-precision isotope analysis, is complicated by the presence of multiple Cr-species with different effective charges in the acid digested sample aliquots. The differing ion exchange selectivity and sluggish reaction rates of these species can result in incomplete Cr recovery during chromatographic purification. Because of large mass-dependent inter-species isotope fractionation, incomplete recovery can affect the accuracy of high-precision Cr isotope analysis. Here, we demonstrate widely differing cation distribution coefficients of Cr(III)-species (Cr3+, CrCl2+ and CrCl2+) with equilibrium mass-dependent isotope fractionation spanning a range of ~1‰/amu and consistent with theory. The heaviest isotopes partition into Cr3+, intermediates in CrCl2+ and the lightest in CrCl2+/CrCl3°. Thus, for a typical reported loss of ~25% Cr (in the form of Cr3+) through chromatographic purification, this translates into 185 ppm/amu offset in the stable Cr isotope ratio of the residual sample. Depending on the validity of the mass-bias correction during isotope analysis, this further results in artificial mass-independent effects in the mass-bias corrected 53Cr/52Cr (μ53 Cr* of 5.2 ppm) and 54Cr/52Cr (μ54Cr* of 13.5 ppm) components used to infer chronometric and nucleosynthetic information in meteorites. To mitigate these fractionation effects, we developed strategic chemical sample pre-treatment procedures that ensure high and reproducible Cr recovery. This is achieved either through 1) effective promotion of Cr3+ by >5 days exposure to HNO3 —H2O2 solutions at room temperature, resulting in >~98% Cr recovery for most types of sample matrices tested using a cationic chromatographic retention strategy, or 2) formation of Cr(III)-Cl complexes through exposure to concentrated HCl at high temperature (>120 °C) for several hours, resulting in >97.5% Cr recovery using a chromatographic elution strategy that

  6. Chromatographic speciation of Cr(III)-species, inter-species equilibrium isotope fractionation and improved chemical purification strategies for high-precision isotope analysis.

    PubMed

    Larsen, K K; Wielandt, D; Schiller, M; Bizzarro, M

    2016-04-22

    Chromatographic purification of chromium (Cr), which is required for high-precision isotope analysis, is complicated by the presence of multiple Cr-species with different effective charges in the acid digested sample aliquots. The differing ion exchange selectivity and sluggish reaction rates of these species can result in incomplete Cr recovery during chromatographic purification. Because of large mass-dependent inter-species isotope fractionation, incomplete recovery can affect the accuracy of high-precision Cr isotope analysis. Here, we demonstrate widely differing cation distribution coefficients of Cr(III)-species (Cr(3+), CrCl(2+) and CrCl2(+)) with equilibrium mass-dependent isotope fractionation spanning a range of ∼1‰/amu and consistent with theory. The heaviest isotopes partition into Cr(3+), intermediates in CrCl(2+) and the lightest in CrCl2(+)/CrCl3°. Thus, for a typical reported loss of ∼25% Cr (in the form of Cr(3+)) through chromatographic purification, this translates into 185ppm/amu offset in the stable Cr isotope ratio of the residual sample. Depending on the validity of the mass-bias correction during isotope analysis, this further results in artificial mass-independent effects in the mass-bias corrected (53)Cr/(52)Cr (μ(53)Cr* of 5.2ppm) and (54)Cr/(52)Cr (μ(54)Cr* of 13.5ppm) components used to infer chronometric and nucleosynthetic information in meteorites. To mitigate these fractionation effects, we developed strategic chemical sample pre-treatment procedures that ensure high and reproducible Cr recovery. This is achieved either through 1) effective promotion of Cr(3+) by >5 days exposure to HNO3H2O2 solutions at room temperature, resulting in >∼98% Cr recovery for most types of sample matrices tested using a cationic chromatographic retention strategy, or 2) formation of Cr(III)-Cl complexes through exposure to concentrated HCl at high temperature (>120°C) for several hours, resulting in >97.5% Cr recovery using a

  7. Speciation by Symbiosis: the Microbiome and Behavior

    PubMed Central

    Shropshire, J. Dylan

    2016-01-01

    ABSTRACT Species are fundamental units of comparison in biology. The newly discovered importance and ubiquity of host-associated microorganisms are now stimulating work on the roles that microbes can play in animal speciation. We previously synthesized the literature and advanced concepts of speciation by symbiosis with notable attention to hybrid sterility and lethality. Here, we review recent studies and relevant data on microbes as players in host behavior and behavioral isolation, emphasizing the patterns seen in these analyses and highlighting areas worthy of additional exploration. We conclude that the role of microbial symbionts in behavior and speciation is gaining exciting traction and that the holobiont and hologenome concepts afford an evolving intellectual framework to promote research and intellectual exchange between disciplines such as behavior, microbiology, genetics, symbiosis, and speciation. Given the increasing centrality of microbiology in macroscopic life, microbial symbiosis is arguably the most neglected aspect of animal and plant speciation, and studying it should yield a better understanding of the origin of species. PMID:27034284

  8. Speciation by Symbiosis: the Microbiome and Behavior.

    PubMed

    Shropshire, J Dylan; Bordenstein, Seth R

    2016-01-01

    Species are fundamental units of comparison in biology. The newly discovered importance and ubiquity of host-associated microorganisms are now stimulating work on the roles that microbes can play in animal speciation. We previously synthesized the literature and advanced concepts of speciation by symbiosis with notable attention to hybrid sterility and lethality. Here, we review recent studies and relevant data on microbes as players in host behavior and behavioral isolation, emphasizing the patterns seen in these analyses and highlighting areas worthy of additional exploration. We conclude that the role of microbial symbionts in behavior and speciation is gaining exciting traction and that the holobiont and hologenome concepts afford an evolving intellectual framework to promote research and intellectual exchange between disciplines such as behavior, microbiology, genetics, symbiosis, and speciation. Given the increasing centrality of microbiology in macroscopic life, microbial symbiosis is arguably the most neglected aspect of animal and plant speciation, and studying it should yield a better understanding of the origin of species. PMID:27034284

  9. Speciation without Pre-Defined Fitness Functions

    PubMed Central

    Gras, Robin; Golestani, Abbas; Hendry, Andrew P.; Cristescu, Melania E.

    2015-01-01

    The forces promoting and constraining speciation are often studied in theoretical models because the process is hard to observe, replicate, and manipulate in real organisms. Most models analyzed to date include pre-defined functions influencing fitness, leaving open the question of how speciation might proceed without these built-in determinants. To consider the process of speciation without pre-defined functions, we employ the individual-based ecosystem simulation platform EcoSim. The environment is initially uniform across space, and an evolving behavioural model then determines how prey consume resources and how predators consume prey. Simulations including natural selection (i.e., an evolving behavioural model that influences survival and reproduction) frequently led to strong and distinct phenotypic/genotypic clusters between which hybridization was low. This speciation was the result of divergence between spatially-localized clusters in the behavioural model, an emergent property of evolving ecological interactions. By contrast, simulations without natural selection (i.e., behavioural model turned off) but with spatial isolation (i.e., limited dispersal) produced weaker and overlapping clusters. Simulations without natural selection or spatial isolation (i.e., behaviour model turned off and high dispersal) did not generate clusters. These results confirm the role of natural selection in speciation by showing its importance even in the absence of pre-defined fitness functions. PMID:26372462

  10. Dynamic Mechanical Thermal Analysis of Virgin TR-55 Silicone Rubber

    SciTech Connect

    Small IV, W; Wilson, T S

    2009-10-09

    Dynamic mechanical thermal analysis (DMTA) of virgin TR-55 silicone rubber specimens was conducted. Dynamic frequency/temperature sweep tests were conducted over the ranges 0.1-100 rad/s and 30-100 C using a parallel plate test geometry. A strain of 0.2% was used, which was near the upper limit of the linear viscoelastic region of the material based on initial dynamic strain sweep tests. Master curves of G{prime} and G{double_prime} as a function of frequency were generated using time-temperature superposition (horizontal shift with initial vertical correction). The activation energy calculated from an Arrhenius fit to the horizontal shift factors was 178-355 kJ/mol. The calculated percent load retention at {approx}50 years was 61-68%.

  11. Undersampled dynamic magnetic resonance imaging using kernel principal component analysis.

    PubMed

    Wang, Yanhua; Ying, Leslie

    2014-01-01

    Compressed sensing (CS) is a promising approach to accelerate dynamic magnetic resonance imaging (MRI). Most existing CS methods employ linear sparsifying transforms. The recent developments in non-linear or kernel-based sparse representations have been shown to outperform the linear transforms. In this paper, we present an iterative non-linear CS dynamic MRI reconstruction framework that uses the kernel principal component analysis (KPCA) to exploit the sparseness of the dynamic image sequence in the feature space. Specifically, we apply KPCA to represent the temporal profiles of each spatial location and reconstruct the images through a modified pre-image problem. The underlying optimization algorithm is based on variable splitting and fixed-point iteration method. Simulation results show that the proposed method outperforms conventional CS method in terms of aliasing artifact reduction and kinetic information preservation. PMID:25570262

  12. An analysis of the kinematics and dynamics of underactuated manipulators

    SciTech Connect

    Jain, A.; Rodriguez, G.

    1993-08-01

    The dynamics and kinematics of manipulators that have fewer actuators than degrees of freedom are studied. These underactuated manipulators arise in a number of important applications such as free-flying space robots, hyperredundant manipulators, manipulators with structural flexibility, etc. In the analysis such underactuated manipulators are decomposed into component active and passive arms. This decomposition allows techniques previously developed for regular (fully actuated) manipulators to be applied to underactuated systems. Spatial operator identities are used to develop closed-form expressions for the generalized accelerations for the system. These expressions form the basis for a recursive dynamics algorithm. The structure of this algorithm is a hybrid of known forward and inverse dynamics algorithms for regular manipulators. Expressions and computational algorithms are also developed for the generalized and disturbance Jacobians for underactuated manipulators. The application of the results in the paper to space manipulators is also described.

  13. Speciation analysis of arsenic in biological matrices by automated hydride generation-cryotrapping-atomic absorption spectrometry with multiple microflame quartz tube atomizer (multiatomizer)

    PubMed Central

    Hernández-Zavala, Araceli; Matoušek, Tomáš; Drobná, Zuzana; Paul, David S.; Walton, Felecia; Adair, Blakely M.; Jiří, Dědina; Thomas, David J.

    2008-01-01

    Analyses of arsenic (As) species in tissues and body fluids of individuals chronically exposed to inorganic arsenic (iAs) provide essential information about the exposure level and pattern of iAs metabolism. We have previously described an oxidation state-specific analysis of As species in biological matrices by hydride-generation atomic absorption spectrometry (HG-AAS), using cryotrapping (CT) for preconcentration and separation of arsines. To improve performance and detection limits of the method, HG and CT steps are automated and a conventional flame-in-tube atomizer replaced with a recently developed multiple microflame quartz tube atomizer (multiatomizer). In this system, arsines from AsIII-species are generated in a mixture of Tris-HCl (pH 6) and sodium borohydride. For generation of arsines from both AsIII- and AsV-species, samples are pretreated with L-cysteine. Under these conditions, dimethylthioarsinic acid, a newly described metabolite of iAs, does not interfere significantly with detection and quantification of methylated trivalent arsenicals. Analytical performance of the automated HG-CT-AAS was characterized by analyses of cultured cells and mouse tissues that contained mono- and dimethylated metabolites of iAs. The capacity to detect methylated AsIII- and AsV-species was verified, using an in vitro methylation system containing recombinant rat arsenic (+3 oxidation state) methyltransferase and cultured rat hepatocytes treated with iAs. Compared with the previous HG-CT-AAS design, detection limits for iAs and its metabolites have improved significantly with the current system, ranging from 8 to 20 pg. Recoveries of As were between 78 and 117%. The precision of the method was better than 5% for all biological matrices examined. Thus, the automated HG-CT-AAS system provides an effective and sensitive tool for analysis of all major human metabolites of iAs in complex biological matrices. PMID:18677417

  14. Glass-transition dynamics of a polyurethane gel using ultrasonic spectroscopy, dynamic light scattering, and dynamical mechanical thermal analysis

    NASA Astrophysics Data System (ADS)

    Tabellout, M.; Baillif, P.-Y.; Randrianantoandro, H.; Litzinger, F.; Emery, J. R.; Nicolai, T.; Durand, D.

    1995-05-01

    The glass-transition dynamics of a polyurethane gel were studied over a wide temperature and frequency range using ultrasonic spectroscopy (US), dynamic light scattering (DLS), and dynamical mechanical thermal analysis (DMTA). DMTA showed both an α and a β relaxation, while with DLS only the α relaxation could be observed. The α relaxation measured by DLS and DMTA was analyzed in terms of a continuous relaxation time distribution. This analysis method is compared to an analysis in terms of the Kohlrausch-Williams-Watts function for the DLS results and the Havriliak-Negami function for the DMTA results. The shape of the relaxation time distribution is temperature independent over the temperature range covered and identical for both techniques. The temperature dependence of the characteristic relaxation rates is well described by the so-called Vogel-Fulcher-Tamman-Hesse equation. Characteristic relaxation rates measured by DLS were about a factor 10 smaller than interpolated from the US and DMTA measurements. Since DLS measures a compliance and the two other techniques a modulus, lower values are expected. If the compliance data are converted into corresponding values for the modulus, the DLS results are compatible with the US and DMTA results.

  15. Hydroxyl speciation in felsic magmas

    NASA Astrophysics Data System (ADS)

    Malfait, Wim J.; Xue, Xianyu

    2014-09-01

    The hydroxyl speciation of hydrous, metaluminous potassium and calcium aluminosilicate glasses was investigated by 27Al-1H cross polarization and quantitative 1H MAS NMR spectroscopy. Al-OH is present in both the potassium and the calcium aluminosilicate glasses and its 1H NMR partial spectrum was derived from the 27Al-1H cross polarization data. For the calcium aluminosilicate glasses, the abundance of Al-OH could not be determined because of the low spectral resolution. For the potassium aluminosilicate glasses, the fraction of Al-OH was quantified by fitting its partial spectrum to the quantitative 1H NMR spectra. The degree of aluminum avoidance and the relative tendency for Si-O-Si, Si-O-Al and Al-O-Al bonds to hydrolyze were derived from the measured species abundances. Compared to the sodium, lithium and calcium systems, potassium aluminosilicate glasses display a much stronger degree of aluminum avoidance and a stronger tendency for the Al-O-Al linkages to hydrolyze. Combining our results with those for sodium aluminosilicate glasses (Malfait and Xue, 2010a), we predict that the hydroxyl groups in rhyolitic and phonolitic magmas are predominantly present as Si-OH (84-89% and 68-78%, respectively), but with a significant fraction of Al-OH (11-16% and 22-32%, respectively). For both rhyolitic and phonolitic melts, the AlOH/(AlOH + SiOH) ratio is likely smaller than the Al/(Al + Si) ratio for the lower end of the natural temperature range but may approach the Al/(Al + Si) ratio at higher temperatures.

  16. Static and dynamic analysis of a diamagnetic bearing system

    NASA Astrophysics Data System (ADS)

    Cansiz, Ahmet

    2008-02-01

    A unique numerical calculation method was constructed in order to analyze the static and dynamic characteristics of the diamagnetic bearing. An experimental setup consisting of a permanent magnet rotor, levitated with the arrangement of ferrite magnet and bismuth blocks, was used to confirm theoretical calculations. The stability analysis of the bearing relating to the vertical and lateral forces was incorporated with the dynamic model. The interaction force between the rotor magnet and the diamagnetic materials was modeled with the Amperian current approach via the diamagnetic-mirror-image concept. The magnetic potential of the system, which provides the equation of motion, was stated in terms of diamagnetic and gravitational interactions. The equations of motion of the dynamic part of the system were stated as a function of lateral, vertical, and tilt angles. Correlation of the vibrations such as vertical, radial, and tilt was determined with a numerical calculation obtained by the Runge-Kutta method. Translational and rotational tests together with the theoretical calculations showed the equilibrium position of the rotor to be stable statically and dynamically. The permanent magnet was spun up under vacuum conditions and then let to free spin down to analyze its dynamics.

  17. Stability analysis and controller synthesis for hybrid dynamical systems.

    PubMed

    Heemels, W P M H; De Schutter, B; Lunze, J; Lazar, M

    2010-11-13

    Wherever continuous and discrete dynamics interact, hybrid systems arise. This is especially the case in many technological systems in which logic decision-making and embedded control actions are combined with continuous physical processes. Also for many mechanical, biological, electrical and economical systems the use of hybrid models is essential to adequately describe their behaviour. To capture the evolution of these systems, mathematical models are needed that combine in one way or another the dynamics of the continuous parts of the system with the dynamics of the logic and discrete parts. These mathematical models come in all kinds of variations, but basically consist of some form of differential or difference equations on the one hand and automata or other discrete-event models on the other hand. The collection of analysis and synthesis techniques based on these models forms the research area of hybrid systems theory, which plays an important role in the multi-disciplinary design of many technological systems that surround us. This paper presents an overview from the perspective of the control community on modelling, analysis and control design for hybrid dynamical systems and surveys the major research lines in this appealing and lively research area. PMID:20921005

  18. Effective field theory of dark energy: a dynamical analysis

    SciTech Connect

    Frusciante, Noemi; Raveri, Marco; Silvestri, Alessandra E-mail: mraveri@sissa.it

    2014-02-01

    The effective field theory (EFT) of dark energy relies on three functions of time to describe the dynamics of background cosmology. The viability of these functions is investigated here by means of a thorough dynamical analysis. While the system is underdetermined, and one can always find a set of functions reproducing any expansion history, we are able to determine general compatibility conditions for these functions by requiring a viable background cosmology. In particular, we identify a set of variables that allows us to transform the non-autonomous system of equations into an infinite-dimensional one characterized by a significant recursive structure. We then analyze several autonomous sub-systems, obtained truncating the original one at increasingly higher dimension, that correspond to increasingly general models of dark energy and modified gravity. Furthermore, we exploit the recursive nature of the system to draw some general conclusions on the different cosmologies that can be recovered within the EFT formalism and the corresponding compatibility requirements for the EFT functions. The machinery that we set up serves different purposes. It offers a general scheme for performing dynamical analysis of dark energy and modified gravity models within the model independent framework of EFT; the general results, obtained with this technique, can be projected into specific models, as we show in one example. It also can be used to determine appropriate ansätze for the three EFT background functions when studying the dynamics of cosmological perturbations in the context of large scale structure tests of gravity.

  19. Multistage neural network model for dynamic scene analysis

    SciTech Connect

    Ajjimarangsee, P.

    1989-01-01

    This research is concerned with dynamic scene analysis. The goal of scene analysis is to recognize objects and have a meaningful interpretation of the scene from which images are obtained. The task of the dynamic scene analysis process generally consists of region identification, motion analysis and object recognition. The objective of this research is to develop clustering algorithms using neural network approach and to investigate a multi-stage neural network model for region identification and motion analysis. The research is separated into three parts. First, a clustering algorithm using Kohonens' self-organizing feature map network is developed to be capable of generating continuous membership valued outputs. A newly developed version of the updating algorithm of the network is introduced to achieve a high degree of parallelism. A neural network model for the fuzzy c-means algorithm is proposed. In the second part, the parallel algorithms of a neural network model for clustering using the self-organizing feature maps approach and a neural network that models the fuzzy c-means algorithm are modified for implementation on a distributed memory parallel architecture. In the third part, supervised and unsupervised neural network models for motion analysis are investigated. For a supervised neural network, a three layer perceptron network is trained by a series of images to recognize the movement of the objects. For the unsupervised neural network, a self-organizing feature mapping network will learn to recognize the movement of the objects without an explicit training phase.

  20. Iron speciation in human cancer cells by K-edge total reflection X-ray fluorescence-X-ray absorption near edge structure analysis

    NASA Astrophysics Data System (ADS)

    Polgári, Zs.; Meirer, F.; Sasamori, S.; Ingerle, D.; Pepponi, G.; Streli, C.; Rickers, K.; Réti, A.; Budai, B.; Szoboszlai, N.; Záray, G.

    2011-03-01

    X-ray absorption near edge structure (XANES) analysis in combination with synchrotron radiation induced total reflection X-ray fluorescence (SR-TXRF) acquisition was used to determine the oxidation state of Fe in human cancer cells and simultaneously their elemental composition by applying a simple sample preparation procedure consisting of pipetting the cell suspension onto the quartz reflectors. XANES spectra of several inorganic and organic iron compounds were recorded and compared to that of different cell lines. The XANES spectra of cells, independently from the phase of cell growth and cell type were very similar to that of ferritin, the main Fe store within the cell. The spectra obtained after CoCl 2 or NiCl 2 treatment, which could mimic a hypoxic state of cells, did not differ noticeably from that of the ferritin standard. After 5-fluorouracil administration, which could also induce an oxidative-stress in cells, the absorption edge position was shifted toward higher energies representing a higher oxidation state of Fe. Intense treatment with antimycin A, which inhibits electron transfer in the respiratory chain, resulted in minor changes in the spectrum, resembling rather the N-donor Fe-α,α'-dipyridyl complex at the oxidation energy of Fe(III), than ferritin. The incorporation of Co and Ni in the cells was followed by SR-TXRF measurements.

  1. Dynamic flux balance analysis for synthetic microbial communities.

    PubMed

    Henson, Michael A; Hanly, Timothy J

    2014-10-01

    Dynamic flux balance analysis (DFBA) is an extension of classical flux balance analysis that allows the dynamic effects of the extracellular environment on microbial metabolism to be predicted and optimised. Recently this computational framework has been extended to microbial communities for which the individual species are known and genome-scale metabolic reconstructions are available. In this review, the authors provide an overview of the emerging DFBA approach with a focus on two case studies involving the conversion of mixed hexose/pentose sugar mixtures by synthetic microbial co-culture systems. These case studies illustrate the key requirements of the DFBA approach, including the incorporation of individual species metabolic reconstructions, formulation of extracellular mass balances, identification of substrate uptake kinetics, numerical solution of the coupled linear program/differential equations and model adaptation for common, suboptimal growth conditions and identified species interactions. The review concludes with a summary of progress to date and possible directions for future research. PMID:25257022

  2. Dynamic Analysis of Geared Rotors by Finite Elements

    NASA Technical Reports Server (NTRS)

    Kahraman, A.; Ozguven, H. Nevzat; Houser, D. R.; Zakrajsek, J. J.

    1992-01-01

    A finite element model of a geared rotor system on flexible bearings has been developed. The model includes the rotary inertia of on shaft elements, the axial loading on shafts, flexibility and damping of bearings, material damping of shafts and the stiffness and the damping of gear mesh. The coupling between the torsional and transverse vibrations of gears were considered in the model. A constant mesh stiffness was assumed. The analysis procedure can be used for forced vibration analysis geared rotors by calculating the critical speeds and determining the response of any point on the shafts to mass unbalances, geometric eccentricities of gears, and displacement transmission error excitation at the mesh point. The dynamic mesh forces due to these excitations can also be calculated. The model has been applied to several systems for the demonstration of its accuracy and for studying the effect of bearing compliances on system dynamics.

  3. Transient analysis techniques in performing impact and crash dynamic studies

    NASA Technical Reports Server (NTRS)

    Pifko, A. B.; Winter, R.

    1989-01-01

    Because of the emphasis being placed on crashworthiness as a design requirement, increasing demands are being made by various organizations to analyze a wide range of complex structures that must perform safely when subjected to severe impact loads, such as those generated in a crash event. The ultimate goal of crashworthiness design and analysis is to produce vehicles with the ability to reduce the dynamic forces experienced by the occupants to specified levels, while maintaining a survivable envelope around them during a specified crash event. DYCAST is a nonlinear structural dynamic finite element computer code that started from the plans systems of a finite element program for static nonlinear structural analysis. The essential features of DYCAST are outlined.

  4. Dynamic Analysis of Communication and Collaboration in OSS Projects

    NASA Astrophysics Data System (ADS)

    Pinzger, Martin; Gall, Harald C.

    Software repositories, such as versioning, bug reporting, and developer mailing list archives contain valuable data for analyzing the history of software projects and its dynamics. In this chapter, we focus on the analysis of the communication and collaboration in software projects and present an approach that works on software archives with social network analysis techniques. Our tool called STNA-CockpitSTNA-cockpit provides both, a meta-model to represent communication and collaboration and a graph visualization technique to interactively explore instances of the meta-model. These instances are reconstructed from CVS, Bugzilla, and mailing list data. In a case study with the Eclipse Platform Core project data we demonstrate that with STNA-Cockpit one can observe project dynamics for certain periods of time. This allows, for example, project managers to early identify communication bottlenecks, contributor and expertise networks, or to understand how newcomers can be integrated fast and efficiently into their team.

  5. Dynamic Analysis of Large In-Space Deployable Membrane Antennas

    NASA Technical Reports Server (NTRS)

    Fang, Houfei; Yang, Bingen; Ding, Hongli; Hah, John; Quijano, Ubaldo; Huang, John

    2006-01-01

    This paper presents a vibration analysis of an eight-meter diameter membrane reflectarray antenna, which is composed of a thin membrane and a deployable frame. This analysis process has two main steps. In the first step, a two-variable-parameter (2-VP) membrane model is developed to determine the in-plane stress distribution of the membrane due to pre-tensioning, which eventually yields the differential stiffness of the membrane. In the second step, the obtained differential stiffness is incorporated in a dynamic equation governing the transverse vibration of the membrane-frame assembly. This dynamic equation is then solved by a semi-analytical method, called the Distributed Transfer Function Method (DTFM), which produces the natural frequencies and mode shapes of the antenna. The combination of the 2-VP model and the DTFM provides an accurate prediction of the in-plane stress distribution and modes of vibration for the antenna.

  6. Flight Dynamics Analysis Branch End of Fiscal Year 2002 Report

    NASA Technical Reports Server (NTRS)

    Mangus, David (Editor); Mendelsohn, Chad (Editor); Starin, Scott (Editor); Stengle, Tom (Editor); Truong, Son (Editor)

    2002-01-01

    This report summarizes the major activities and accomplishments carried out by the Flight Dynamics Analysis Branch (FDAB), Code 572, in support of flight projects and technology development initiatives in Fiscal Year (FY) 2002. The report is intended to serve as a summary of the type of support carried out by the FDAB, as well as a concise reference of key accomplishments and mission experience derived from the various mission support roles. The primary focus of the FDAB is to provide expertise in the disciplines of flight dynamics including navigation, spacecraft trajectory design, attitude analysis, attitude determination and attitude control. The FDAB currently provides support for missions and technology development projects involving NASA, government, university, and private industry.

  7. DYNAMIC NON LINEAR IMPACT ANALYSIS OF FUEL CASK CONTAINMENT VESSELS

    SciTech Connect

    Leduc, D

    2008-06-10

    Large fuel casks present challenges when evaluating their performance in the accident sequence specified in 10CFR 71. Testing is often limited because of cost, difficulty in preparing test units and the limited availability of facilities which can carry out such tests. In the past, many casks were evaluated without testing using simplified analytical methods. This paper details the use of dynamic non-linear analysis of large fuel casks using advanced computational techniques. Results from the dynamic analysis of two casks, the T-3 Spent Fuel Cask and the Hanford Un-irradiated Fuel Package are examined in detail. These analyses are used to fully evaluate containment vessel stresses and strains resulting from complex loads experienced by cask components during impacts. Importantly, these advanced analytical analyses are capable of examining stresses in key regions of the cask including the cask closure. This paper compares these advanced analytical results with the results of simplified cask analyses like those detailed in NUREG 3966.

  8. Analysis of the human electroencephalogram with methods from nonlinear dynamics

    SciTech Connect

    Mayer-Kress, G.; Holzfuss, J.

    1986-09-08

    We apply several different methods from nonlinear dynamical systems to the analysis of the degree of temporal disorder in data from human EEG. Among these are methods of geometrical reconstruction, dimensional complexity, mutual information content, and two different approaches for estimating Lyapunov characteristic exponents. We show how the naive interpretation of numerical results can lead to a considerable underestimation of the dimensional complexity. This is true even when the errors from least squares fits are small. We present more realistic error estimates and show that they seem to contain additional, important information. By applying independent methods of analysis to the same data sets for a given lead, we find that the degree of temporal disorder is minimal in a ''resting awake'' state and increases in sleep as well as in fluroxene induced general anesthesia. At the same time the statistical errors appear to decrease, which can be interpretated as a transition to a more uniform dynamical state. 29 refs., 10 figs.

  9. Dynamic analysis of geared rotors by finite elements

    NASA Technical Reports Server (NTRS)

    Kahraman, A.; Ozguven, H. N.; Houser, D. R.; Zakrajsek, J.

    1989-01-01

    The finite element model of a geared rotor system on flexible bearings has been developed. The model includes the rotary inertia of shaft elements, the axial loading on shafts, flexibility and damping of bearings, material damping of shafts and the stiffness and the damping of gear mesh. The coupling between the torsional and transverse vibrations of gears were considered in the model. A constant mesh stiffness was assumed. The analysis procedure can be used for forced vibration analysis of geared rotors by calculating the critical speeds and determining the response of any point on the shaft to mass unbalances, geometric eccentricities of gears and displacement transmission error excitation at the mesh point. The dynamic mesh forces due to these excitations can also be calculated. The model has been applied to several systems for the demonstration of its accuracy and for studying the effect of bearing compliances on system dynamics.

  10. RAVEN, a New Software for Dynamic Risk Analysis

    SciTech Connect

    Cristian Rabiti; Andrea Alfonsi; Joshua Cogliati; Diego Mandelli; Robert Kinoshita

    2014-06-01

    RAVEN is a generic software driver to perform parametric and probabilistic analysis of code simulating complex systems. Initially developed to provide dynamic risk analysis capabilities to the RELAP-7 code [1] is currently being generalized with the addition of Application Programming Interfaces (APIs). These interfaces are used to extend RAVEN capabilities to any software as long as all the parameters that need to be perturbed are accessible by inputs files or directly via python interfaces. RAVEN is capable to investigate the system response probing the input space using Monte Carlo, grid strategies, or Latin Hyper Cube schemes, but its strength is its focus toward system feature discovery like limit surfaces separating regions of the input space leading to system failure using dynamic supervised learning techniques. The paper will present an overview of the software capabilities and their implementation schemes followed by same application examples.

  11. Dynamic analysis of geared rotors by finite elements

    NASA Technical Reports Server (NTRS)

    Kahraman, Ahmet; Ozguven, H. Nevzat; Houser, Donald R.; Zakrajsek, James J.

    1990-01-01

    A finite-element model of a geared rotor system on flexible bearings was developed. The model includes the rotary inertia of shaft elements, the axial loading on shafts, flexibility and damping of bearings, material damping of shafts and the stiffness and the damping of gear mesh. The coupling between the torsional and transverse vibrations of gears were considered in the model. A constant mesh stiffness was assumed. The analysis procedure can be used for forced vibration analysis of geared rotors by calculating the critical speeds and determining the response of any point on the shaft to mass unbalances, geometric eccentricities of gears and displacement transmission error excitation at the mesh point. The dynamic mesh forces due to these excitations can also be calculated. The model has been applied to several systems for the demonstration of its accuracy and for studying the effect of bearing compliances on system dynamics.

  12. Estimating trait-dependent speciation and extinction rates from incompletely resolved phylogenies.

    PubMed

    FitzJohn, Richard G; Maddison, Wayne P; Otto, Sarah P

    2009-12-01

    Species traits may influence rates of speciation and extinction, affecting both the patterns of diversification among lineages and the distribution of traits among species. Existing likelihood approaches for detecting differential diversification require complete phylogenies; that is, every extant species must be present in a well-resolved phylogeny. We developed 2 likelihood methods that can be used to infer the effect of a trait on speciation and extinction without complete phylogenetic information, generalizing the recent binary-state speciation and extinction method. Our approaches can be used where a phylogeny can be reasonably assumed to be a random sample of extant species or where all extant species are included but some are assigned only to terminal unresolved clades. We explored the effects of decreasing phylogenetic resolution on the ability of our approach to detect differential diversification within a Bayesian framework using simulated phylogenies. Differential diversification caused by an asymmetry in speciation rates was nearly as well detected with only 50% of extant species phylogenetically resolved as with complete phylogenetic knowledge. We demonstrate our unresolved clade method with an analysis of sexual dimorphism and diversification in shorebirds (Charadriiformes). Our methods allow for the direct estimation of the effect of a trait on speciation and extinction rates using incompletely resolved phylogenies. PMID:20525612

  13. Evidence for nonallopatric speciation among closely related sympatric Heliotropium species in the Atacama Desert.

    PubMed

    Luebert, Federico; Jacobs, Pit; Hilger, Hartmut H; Muller, Ludo A H

    2014-02-01

    The genetic structure of populations of closely related, sympatric species may hold the signature of the geographical mode of the speciation process. In fully allopatric speciation, it is expected that genetic differentiation between species is homogeneously distributed across the genome. In nonallopatric speciation, the genomes may remain undifferentiated to a large extent. In this article, we analyzed the genetic structure of five sympatric species from the plant genus Heliotropium in the Atacama Desert. We used amplified fragment length polymorphisms (AFLPs) to characterize the genetic structure of these species and evaluate their genetic differentiation as well as the number of loci subject to positive selection using divergence outlier analysis (DOA). The five species form distinguishable groups in the genetic space, with zones of overlap, indicating that they are possibly not completely isolated. Among-species differentiation accounts for 35% of the total genetic differentiation (F ST = 0.35), and F ST between species pairs is positively correlated with phylogenetic distance. DOA suggests that few loci are subject to positive selection, which is in line with a scenario of nonallopatric speciation. These results support the idea that sympatric species of Heliotropium sect. Cochranea are under an ongoing speciation process, characterized by a fluctuation of population ranges in response to pulses of arid and humid periods during Quaternary times. PMID:24558582

  14. Evidence for nonallopatric speciation among closely related sympatric Heliotropium species in the Atacama Desert

    PubMed Central

    Luebert, Federico; Jacobs, Pit; Hilger, Hartmut H; Muller, Ludo A H

    2014-01-01

    The genetic structure of populations of closely related, sympatric species may hold the signature of the geographical mode of the speciation process. In fully allopatric speciation, it is expected that genetic differentiation between species is homogeneously distributed across the genome. In nonallopatric speciation, the genomes may remain undifferentiated to a large extent. In this article, we analyzed the genetic structure of five sympatric species from the plant genus Heliotropium in the Atacama Desert. We used amplified fragment length polymorphisms (AFLPs) to characterize the genetic structure of these species and evaluate their genetic differentiation as well as the number of loci subject to positive selection using divergence outlier analysis (DOA). The five species form distinguishable groups in the genetic space, with zones of overlap, indicating that they are possibly not completely isolated. Among-species differentiation accounts for 35% of the total genetic differentiation (FST = 0.35), and FST between species pairs is positively correlated with phylogenetic distance. DOA suggests that few loci are subject to positive selection, which is in line with a scenario of nonallopatric speciation. These results support the idea that sympatric species of Heliotropium sect. Cochranea are under an ongoing speciation process, characterized by a fluctuation of population ranges in response to pulses of arid and humid periods during Quaternary times. PMID:24558582

  15. Detecting Hidden Diversification Shifts in Models of Trait-Dependent Speciation and Extinction.

    PubMed

    Beaulieu, Jeremy M; O'Meara, Brian C

    2016-07-01

    The distribution of diversity can vary considerably from clade to clade. Attempts to understand these patterns often employ state-dependent speciation and extinction models to determine whether the evolution of a particular novel trait has increased speciation rates and/or decreased extinction rates. It is still unclear, however, whether these models are uncovering important drivers of diversification, or whether they are simply pointing to more complex patterns involving many unmeasured and co-distributed factors. Here we describe an extension to the popular state-dependent speciation and extinction models that specifically accounts for the presence of unmeasured factors that could impact diversification rates estimated for the states of any observed trait, addressing at least one major criticism of BiSSE (Binary State Speciation and Extinction) methods. Specifically, our model, which we refer to as HiSSE (Hidden State Speciation and Extinction), assumes that related to each observed state in the model are "hidden" states that exhibit potentially distinct diversification dynamics and transition rates than the observed states in isolation. We also demonstrate how our model can be used as character-independent diversification models that allow for a complex diversification process that is independent of the evolution of a character. Under rigorous simulation tests and when applied to empirical data, we find that HiSSE performs reasonably well, and can at least detect net diversification rate differences between observed and hidden states and detect when diversification rate differences do not correlate with the observed states. We discuss the remaining issues with state-dependent speciation and extinction models in general, and the important ways in which HiSSE provides a more nuanced understanding of trait-dependent diversification. PMID:27016728

  16. Severe accident analysis using dynamic accident progression event trees

    NASA Astrophysics Data System (ADS)

    Hakobyan, Aram P.

    In present, the development and analysis of Accident Progression Event Trees (APETs) are performed in a manner that is computationally time consuming, difficult to reproduce and also can be phenomenologically inconsistent. One of the principal deficiencies lies in the static nature of conventional APETs. In the conventional event tree techniques, the sequence of events is pre-determined in a fixed order based on the expert judgments. The main objective of this PhD dissertation was to develop a software tool (ADAPT) for automated APET generation using the concept of dynamic event trees. As implied by the name, in dynamic event trees the order and timing of events are determined by the progression of the accident. The tool determines the branching times from a severe accident analysis code based on user specified criteria for branching. It assigns user specified probabilities to every branch, tracks the total branch probability, and truncates branches based on the given pruning/truncation rules to avoid an unmanageable number of scenarios. The function of a dynamic APET developed includes prediction of the conditions, timing, and location of containment failure or bypass leading to the release of radioactive material, and calculation of probabilities of those failures. Thus, scenarios that can potentially lead to early containment failure or bypass, such as through accident induced failure of steam generator tubes, are of particular interest. Also, the work is focused on treatment of uncertainties in severe accident phenomena such as creep rupture of major RCS components, hydrogen burn, containment failure, timing of power recovery, etc. Although the ADAPT methodology (Analysis of Dynamic Accident Progression Trees) could be applied to any severe accident analysis code, in this dissertation the approach is demonstrated by applying it to the MELCOR code [1]. A case study is presented involving station blackout with the loss of auxiliary feedwater system for a

  17. On the GFP-based analysis of dynamic concentration profiles.

    PubMed

    Berezhkovskii, Alexander M; Shvartsman, Stanislav Y

    2014-02-01

    Studies with GFP-tagged proteins can be used to investigate the dynamics of concentration profiles of regulatory proteins in cells and tissues. Analysis of these experiments must account for the finite rate with which the GFP-tagged proteins mature to the fluorescent state. Toward this end, we present an analytical framework that provides an explicit connection between the apparent kinetics of concentration gradients and the rates of GFP maturation. PMID:24507618

  18. Continuous probabilistic analysis to evolutionary game dynamics in finite populations.

    PubMed

    Gao, Meng

    2009-07-01

    Evolutionary game dynamics of two strategies in finite population is studied by continuous probabilistic approach. Besides frequency dependent selection, mutation was also included in this study. The equilibrium probability density functions of abundance, expected time to extinction or fixation were derived and their numerical solutions are calculated as illustrations. Meanwhile, individual-based computer simulations are also done. A comparison reveals the consistency between theoretical analysis and simulations. PMID:19219510

  19. SPECIATE Version 4.4 Database Development Documentation

    EPA Science Inventory

    SPECIATE is the U.S. Environmental Protection Agency’s (EPA) repository of volatile organic gas and particulate matter (PM) speciation profiles of air pollution sources. Some of the many uses of these source profiles include: (1) creating speciated emissions inventories for regi...

  20. EPAs SPECIATE 4.4 Database: Development and Uses

    EPA Science Inventory

    SPECIATE is the U.S. Environmental Protection Agency’s (EPA) repository of source category-specific particulate matter (PM), volatile organic gas, and other gas speciation profiles of air pollutant emissions. Abt Associates, Inc. developed SPECIATE 4.4 through a collaborat...

  1. Computational Fluid Dynamics Analysis of Thoracic Aortic Dissection

    NASA Astrophysics Data System (ADS)

    Tang, Yik; Fan, Yi; Cheng, Stephen; Chow, Kwok

    2011-11-01

    Thoracic Aortic Dissection (TAD) is a cardiovascular disease with high mortality. An aortic dissection is formed when blood infiltrates the layers of the vascular wall, and a new artificial channel, the false lumen, is created. The expansion of the blood vessel due to the weakened wall enhances the risk of rupture. Computational fluid dynamics analysis is performed to study the hemodynamics of this pathological condition. Both idealized geometry and realistic patient configurations from computed tomography (CT) images are investigated. Physiological boundary conditions from in vivo measurements are employed. Flow configuration and biomechanical forces are studied. Quantitative analysis allows clinicians to assess the risk of rupture in making decision regarding surgical intervention.

  2. Probabilistic latent semantic analysis for dynamic textures recognition and localization

    NASA Astrophysics Data System (ADS)

    Wang, Yong; Hu, Shiqiang

    2014-11-01

    We present a framework for dynamic textures (DTs) recognition and localization by using a model developed in the text analysis literature: probabilistic latent semantic analysis (pLSA). The novelty is revealed in three aspects. First, chaotic feature vector is introduced and characterizes each pixel intensity series. Next, the pLSA model is employed to discover the topics by using the bag of words representation. Finally, the spatial layout of DTs can be found. Experimental results are conducted on the well-known DTs datasets. The results show that the proposed method can successfully build DTs models and achieve higher accuracies in DTs recognition and effectively localize DTs.

  3. Dynamic analysis of satellites with deployable hinged appendages

    NASA Technical Reports Server (NTRS)

    Oakes, Kevin F.

    1987-01-01

    The nonlinear equations of motion determining the planar dynamical behavior of an orbiting satellite deploying both one and two rigid appendages have been formulated using Lagrange's equations. The analysis accounts for large angle rotations, Coriolis effects, and the gravitational gradient, and the resulting coupled governing equations are integrated numerically. The analysis is applied to the Space Shuttle based deployment of rigid truss-like members, and results show that spacecraft inertia parameters, appendage mass and length, deployment velocity, and initial conditions all influence the system response. It is found that the resulting librational movement is related to the size of the deployment payload, and that gravitational forces lead to vehicle stabilization.

  4. Nonlinear dynamic analysis of quasi-symmetric anisotropic structures

    NASA Technical Reports Server (NTRS)

    Noor, Ahmed K.; Peters, Jeanne M.

    1987-01-01

    An efficient computational method for the nonlinear dynamic analysis of quasi-symmetric anisotropic structures is proposed. The application of mixed models simplifies the analytical development and improves the accuracy of the response predictions, and operator splitting allows the reduction of the analysis model of the quasi-symmetric structure to that of the corresponding symmetric structure. The preconditoned conjugate gradient provides a stable and effective technique for generating the unsymmetric response of the structure as the sum of a symmetrized response plus correction modes. The effectiveness of the strategy is demonstrated with the example of a laminated anisotropic shallow shell of quadrilateral planform subjected to uniform normal loading.

  5. Arsenic speciation in manufactured seafood products.

    PubMed

    Vélez, D; Montoro, R

    1998-09-01

    The literature on the speciation of arsenic (As) in seafoods was critically reviewed. Most research has been directed toward fresh seafood products with few papers dealing with As speciation in manufactured seafoods. Predictions concerning As species made on the basis of fresh seafood products cannot be extrapolated to manufactured seafoods. Therefore, due to the numerous species of As, the scarcity of data concerning their presence in foods, the transformations each species may undergo during industrial processing and cooking, and the lack of legislation on permitted As levels in seafood products, As species in manufactured seafood products need to be determined and quantified. PMID:9766084

  6. [Study on Speciation Analysis and Ecological Risk Assessment of Heavy Metals in Surface Sediments in Gansu, Ningxia and Inner Mongolia Sections of the Yellow River in Wet Season with HR-ICP-MS].

    PubMed

    Ma, Xiao-ling; Liu, Jing-jun; Zuo, Hang; Huang, Fang; Liu, Ying

    2015-04-01

    In order to continuously study the contents, pollution condition and potential ecological risk of heavy metals in surface sediments in Gansu, Ningxia and Inner Mongolia sections of the Yellow River in wet seasons in different years, the speciation analysis of 9 kinds of heavy metals including Cd, Pb, Cr, Ni, Cu, V, Co, Zn and Mn, pollution condition and potential ecological risk of heavy metals in surface sediments from 10 sampling sites like Baotoufuqiao (S2), Shizuishantaolezhen (S6) and Wujinxia (S9) in Gansu, Ningxia and Inner Mongolia sections of the Yellow River in 2012 wet season were studied with BCR sequential extraction and high resolution inductively coupled plasma-mass spectrometry (HR-ICP-MS) based on our previous works. The results implied that the order of heavy metals average contents in the 10 sediment samples were the same: Mn>V> Zn>Cr>Cu>Ni>Pb>Co>Cd. In the sediments, heavy metals mainly existed in the form of residual fraction, which indicated that the bioavailability or environmental impact was low. Results of geo-accumulation indices (Igeo) showed that Igeo(CD), was the largest among the heavy metals with the strongest pollution, while IGEO(Mn)was the smallest. Enrichment factor (EF) indicated that only Cd and Cu were enriched at some sampling sites. In S5, because EFcd reached 4. 69, Cd was affected by human activities obviously and the result was consistent with I. Potential ecological risk index (RI) implied that the RI values in S1, S2 and S5 were between 150 and 300, which belonged to moderate polluting degree, while others were less than 150, belonging to light pollution degree. The results of this paper could not only provide reliable experimental data and theoretical basis for the relevant departments, but also supply the technical support for constructing mathematics model of sediments-pollutants transport, systematically researching the migration and transformation rule of persistent toxic substances and environmental assessment in

  7. Benefits Analysis of Multi-Center Dynamic Weather Routes

    NASA Technical Reports Server (NTRS)

    Sheth, Kapil; McNally, David; Morando, Alexander; Clymer, Alexis; Lock, Jennifer; Petersen, Julien

    2014-01-01

    Dynamic weather routes are flight plan corrections that can provide airborne flights more than user-specified minutes of flying-time savings, compared to their current flight plan. These routes are computed from the aircraft's current location to a flight plan fix downstream (within a predefined limit region), while avoiding forecasted convective weather regions. The Dynamic Weather Routes automation has been continuously running with live air traffic data for a field evaluation at the American Airlines Integrated Operations Center in Fort Worth, TX since July 31, 2012, where flights within the Fort Worth Air Route Traffic Control Center are evaluated for time savings. This paper extends the methodology to all Centers in United States and presents benefits analysis of Dynamic Weather Routes automation, if it was implemented in multiple airspace Centers individually and concurrently. The current computation of dynamic weather routes requires a limit rectangle so that a downstream capture fix can be selected, preventing very large route changes spanning several Centers. In this paper, first, a method of computing a limit polygon (as opposed to a rectangle used for Fort Worth Center) is described for each of the 20 Centers in the National Airspace System. The Future ATM Concepts Evaluation Tool, a nationwide simulation and analysis tool, is used for this purpose. After a comparison of results with the Center-based Dynamic Weather Routes automation in Fort Worth Center, results are presented for 11 Centers in the contiguous United States. These Centers are generally most impacted by convective weather. A breakdown of individual Center and airline savings is presented and the results indicate an overall average savings of about 10 minutes of flying time are obtained per flight.

  8. Trace metal speciation and bioavailability in anaerobic digestion: A review.

    PubMed

    Thanh, Pham Minh; Ketheesan, Balachandran; Yan, Zhou; Stuckey, David

    2016-01-01

    Trace metals are essential for the growth of anaerobic microorganisms, however, in practice they are often added to anaerobic digesters in excessive amounts, which can lead to inhibition. The concept of bioavailability of metals in anaerobic digestion has been poorly understood in the past, and a lack of deep understanding of the relationship between trace metal speciation and bioavailability can result in ineffective metal dosing strategies for anaerobic digesters. Sequential extraction schemes are useful for fractionating trace metals into their different forms, and metal sulfides can serve as a store and source for trace metals during anaerobic digestion, while natural/synthetic chelating agents (soluble microbial products-SMPs, extracellular polysaccharides-EPS, and EDTA/NTA) are capable of controlling trace metal bioavailability. Nevertheless, more work is needed to: investigate the speciation and bioavailability of Ca, Mg, Mn, W, and Se; compare the bioavailability of different forms of trace metals e.g. carbonates, sulfides, phosphates to different anaerobic trophic groups; determine what factors influence metal sulfide dissolution; investigate whether chelating agents can increase trace metal bioavailability; develop and adapt specialized analytical techniques, and; determine how trace metal dynamics change in an anaerobic membrane bioreactor (AnMBR). PMID:26707985

  9. Dynamic-Mechanical Analysis of Monodomain Nematic Liquid Crystalline Elastomers

    NASA Astrophysics Data System (ADS)

    Hotta, Atsushi; Terentjev, Eugene

    2003-03-01

    Dynamic-mechanical analysis was performed in the glassy, nematic and isotropic states of several monodomain nematic liquid crystalline elastomers (LCE) which differ in their degrees of anisotropy and internal microstructure. It was found that the type of network crosslinker makes a significant difference in the equilibrium properties of these elastomers, in particular, in their effective anisotropy. In spite of these differences, the observed dynamic-mechanical behaviour was very similar. The fact that there is a consistently high and wide loss over the whole nematic region, where storage modulus G' behaves non-monotonically, is most likely an indicator of the fact that the dynamic-mechanical response is not linear. Master curves have been built between the glassy state and the nematic-isotropic phase transition, where the modulus reaches a low-level soft plateau. Above the nematic-isotropic transition temperature Tni, the modulus rises substantially, since internal relaxation is no longer able to reduce the elastic response - and further time-temperature superposition fails. The dynamics of these elastomers are dominated by power laws, which was confirmed by the successful procedure of the master curve inversion (time-frequency inversion) to describe the static stress relaxation. Interestingly, it was found that mechanical properties characterized by power laws (in time) of stress relaxation match very well with the dynamic properties, where power laws (in frequency) were also observed in the dynamic modulus in the appropriate range of temperatures. The work demonstrates the potential for the use of nematic liquid crystalline elastomers in many acoustic and vibration damping applications.

  10. GPU accelerated dynamic functional connectivity analysis for functional MRI data.

    PubMed

    Akgün, Devrim; Sakoğlu, Ünal; Esquivel, Johnny; Adinoff, Bryon; Mete, Mutlu

    2015-07-01

    Recent advances in multi-core processors and graphics card based computational technologies have paved the way for an improved and dynamic utilization of parallel computing techniques. Numerous applications have been implemented for the acceleration of computationally-intensive problems in various computational science fields including bioinformatics, in which big data problems are prevalent. In neuroimaging, dynamic functional connectivity (DFC) analysis is a computationally demanding method used to investigate dynamic functional interactions among different brain regions or networks identified with functional magnetic resonance imaging (fMRI) data. In this study, we implemented and analyzed a parallel DFC algorithm based on thread-based and block-based approaches. The thread-based approach was designed to parallelize DFC computations and was implemented in both Open Multi-Processing (OpenMP) and Compute Unified Device Architecture (CUDA) programming platforms. Another approach developed in this study to better utilize CUDA architecture is the block-based approach, where parallelization involves smaller parts of fMRI time-courses obtained by sliding-windows. Experimental results showed that the proposed parallel design solutions enabled by the GPUs significantly reduce the computation time for DFC analysis. Multicore implementation using OpenMP on 8-core processor provides up to 7.7× speed-up. GPU implementation using CUDA yielded substantial accelerations ranging from 18.5× to 157× speed-up once thread-based and block-based approaches were combined in the analysis. Proposed parallel programming solutions showed that multi-core processor and CUDA-supported GPU implementations accelerated the DFC analyses significantly. Developed algorithms make the DFC analyses more practical for multi-subject studies with more dynamic analyses. PMID:25805449

  11. Dynamical modeling and analysis of large cellular regulatory networks

    NASA Astrophysics Data System (ADS)

    Bérenguier, D.; Chaouiya, C.; Monteiro, P. T.; Naldi, A.; Remy, E.; Thieffry, D.; Tichit, L.

    2013-06-01

    The dynamical analysis of large biological regulatory networks requires the development of scalable methods for mathematical modeling. Following the approach initially introduced by Thomas, we formalize the interactions between the components of a network in terms of discrete variables, functions, and parameters. Model simulations result in directed graphs, called state transition graphs. We are particularly interested in reachability properties and asymptotic behaviors, which correspond to terminal strongly connected components (or "attractors") in the state transition graph. A well-known problem is the exponential increase of the size of state transition graphs with the number of network components, in particular when using the biologically realistic asynchronous updating assumption. To address this problem, we have developed several complementary methods enabling the analysis of the behavior of large and complex logical models: (i) the definition of transition priority classes to simplify the dynamics; (ii) a model reduction method preserving essential dynamical properties, (iii) a novel algorithm to compact state transition graphs and directly generate compressed representations, emphasizing relevant transient and asymptotic dynamical properties. The power of an approach combining these different methods is demonstrated by applying them to a recent multilevel logical model for the network controlling CD4+ T helper cell response to antigen presentation and to a dozen cytokines. This model accounts for the differentiation of canonical Th1 and Th2 lymphocytes, as well as of inflammatory Th17 and regulatory T cells, along with many hybrid subtypes. All these methods have been implemented into the software GINsim, which enables the definition, the analysis, and the simulation of logical regulatory graphs.

  12. Nonlinear dynamic analysis of hydrodynamically-coupled stainless steel structures

    SciTech Connect

    Zhao, Y.

    1996-12-01

    Spent nuclear fuel is usually stored temporarily on the site of nuclear power plants. The spent fuel storage racks are nuclear-safety-related stainless steel structures required to be analyzed for seismic loads. When the storage pool is subjected to three-dimensional (3-D) floor seismic excitations, rack modules, stored fuel bundles, adjacent racks and pool walls, and surrounding water are hydrodynamically coupled. Hydrodynamic coupling (HC) significantly affects the dynamic responses of the racks that are free-standing and submerged in water within the pool. A nonlinear time-history dynamic analysis is usually needed to describe the motion behavior of the racks that are both geometrically nonlinear and material nonlinear in nature. The nonlinearities include the friction resistance between the rack supporting legs and the pool floor, and various potential impacts of fuel-rack, rack-rack, and rack-pool wall. The HC induced should be included in the nonlinear dynamic analysis using the added-hydrodynamic-mass concept based on potential theory per the US Nuclear Regulatory Commission (USNRC) acceptance criteria. To this end, a finite element analysis constitutes a feasible and effective tool. However, most people perform somewhat simplified 1-D, or 2-D, or 3-D single rack and 2-D multiple rack analyses. These analyses are incomplete because a 3-D single rack model behaves quite differently from a 2-D mode. Furthermore, a 3-D whole pool multi-rack model behaves differently than a 3-D single rack model, especially when the strong HC effects are unsymmetrical. In this paper 3-D nonlinear dynamic time-history analyses were performed in a more quantitative manner using sophisticated finite element models developed for a single rack as well as all twelve racks in the whole-pool. Typical response results due to different HC effects are determined and discussed.

  13. Dynamic and Thermodynamic Analysis of a Simple Model of DNA

    NASA Astrophysics Data System (ADS)

    Techera, Mario Isaac Felix

    1991-02-01

    A new simple model of DNA is presented based on the results of lattice dynamics (LD) calculations in conjunction with the modified self-consistent phonon approximation (MSPA) done on a detailed model of DNA homopolymers. The model emphasizes the intrinsic nonlinearities present in the hydrogen-bonded duplex. The impetus for introducing the simplified model is to analyze the importance of the nonlinearities in the dynamics that lead to denaturation. An initial analysis is done on the possible dynamical excitations that can exist in the system due to the hydrogen bond (HB) nonlinearities. It is found that in a certain regime of base-pair motion, the nonlinearities can prevent dissipation of wave packets and thus suggesting the possibility of energy transfer along the molecule. What is also found, is the ability of the nonlinearities to "pin" excitations on the lattice thus suggesting a possible mechanism for localizing energy along the molecule for biologically significant periods of time. This analysis is done on a "cold" chain, i.e. at T = 0 K. In the latter part of this thesis, this model is shown to be thermodynamically unstable under certain circumstances. This instability is analyzed and general conclusions are drawn concerning the thermodynamics of any interaction similar to the ones used in the present case. As a result of this instability the thermodynamic analysis is done in nonequilibrium situations using stochastic methods to simulate a heat bath. Numerical calculations are performed to study the dissociation of the molecule and the possible effects of the thermal bath on the dynamical excitations mentioned in the previous paragraph. It is found that the dissociation time is very long at room temperature for long molecules.

  14. Toxicity, bioavailability and metal speciation.

    PubMed

    Jonnalagadda, S B; Rao, P V

    1993-11-01

    1. Environmental toxicology emphasizes the difference from traditional toxicology in which pure compounds of interest are added to purified diets, or injected into the test animals. When the objective is to study the fate and effects of trace elements in the environment, knowledge of the speciation of the elements and their physico-chemical forms is important. 2. Cadmium salts such as the sulfides, carbonates or oxides, are practically insoluble in water. However, these can be converted to water-soluble salts in nature under the influence of oxygen and acids. Chronic exposure to Cd is associated with renal toxicity in humans once a critical body burden is reached. 3. The solubility of As(III) oxide in water is fairly low, but high in either acid or alkali. In water, arsenic is usually in the form of the arsenate or arsenite. As(III) is systemically more poisonous than the As(V), and As(V) is reduced to the As(III) form before exerting any toxic effects. Organic arsenicals also exert their toxic effects in vivo in animals by first metabolizing to the trivalent arsenoxide form. Some methyl arsenic compounds, such as di- and trimethylarsines, occur naturally as a consequence of biological activity. The toxic effect of arsenite can be potentiated by dithiols, while As has a protective effect against the toxicity of a variety of forms of Se in several species. 4. Selenium occurs in several oxidation states and many selenium analogues of organic sulfur compounds exist in nature. Selenium in selenate form occurs in alkaline soils, where it is soluble and easily available to plants. Selenite binds tightly to iron and aluminum oxides and thus is quite insoluble in soils. Hydrogen selenide is a very toxic gas at room temperature. The methylated forms of Se are much less toxic for the organism than selenite. However, the methylated Se derivatives have strong synergistic toxicity with other minerals such as arsenic. 5. Aquatic organisms absorb and retain Hg in the tissues, as

  15. Speciation distribution and mass balance of copper and zinc in urban rain, sediments, and road runoff.

    PubMed

    Zuo, Xiaojun; Fu, Dafang; Li, He

    2012-11-01

    Heavy metal pollution in road runoff had caused widespread concern since the last century. However, there are little references on metal speciation in multiple environmental media (e.g., rain, road sediments, and road runoff). Our research targeted the investigation of metal speciation in rain, road sediments, and runoff; the analysis of speciation variation and mass balance of metals among rain, road sediments, and runoff; the selection of main factors by principal component analysis (PCA); and the establishment of equation to evaluate the impact of rain and road sediments to metals in road runoff. Sequential extraction procedure contains five steps for the chemical fractionation of metals. Flame atomic absorption spectrometry (Shimadzu, AA-6800) was used to determine metal speciation concentration, as well as the total and dissolved fractions. The dissolved fractions for both Cu and Zn were dominant in rain. The speciation distribution of Zn was different from that of Cu in road sediments, while speciation distribution of Zn is similar to that of Cu in runoff. The bound to carbonates for both Cu and Zn in road sediments were prone to be dissolved by rain. The levels of Cu and Zn in runoff were not obviously influenced by rain, but significantly influenced by road sediments. The masses for both Cu and Zn among rain, road sediments, and road runoff approximately meet the mass balance equation for all rainfall patterns. Five principal factors were selected for metal regression equation based on PCA, including rainfall, average rainfall intensity, antecedent dry periods, total suspended particles, and temperature. The established regression equations could be used to predict the effect of road runoff on receiving environments. PMID:22529005

  16. Dynamic analysis of the metal V-belt CVT

    NASA Astrophysics Data System (ADS)

    Ye, Seung-Hyun; Yi, Seung-Jong

    2005-12-01

    A dynamic analysis of the metal V-belt CVT using a multi-body dynamic model is conducted. A dynamic model is derived based on the multi-body dynamics considering the driving mechanisms for a metal V-belt CVT system. The metal V-belt CVT system is considered as a multi-body system composed 302 bodies, i.e., a driving pulley, a driven pulley, and the 300 blocks. The ring is modeled as the spring-damper element. Considering the contacts between the pulley, the block and the ring, the theoretical formulae were derived. The simulation program using MS-Visual Studio C++ is developed to find the metal block trajectories and to calculate the forces acting on the block and the ring by changing the speed and torque ratios. In this study, the simulation is only conducted under the steady state and the transient state is not considered. The simulation results of the ring tension and six forces acting on a block are found to be in good agreement with the corresponding experimental results.

  17. The future of dynamic factor analysis in psychology and biomedicine.

    PubMed

    Molenaar, P C M

    2006-01-01

    The currently dominant approach to statistical analysis in psychology and biomedicine is based on analysis of inter-individual variation. Differences between subjects drawn from a population of subjects provide the information to make inferences about states of affairs at the population level (e.g., mean and/or covariance structure). Recently it has been shown that in general the inferred states of affairs at the population level do not apply at the level of intra-individual variation characterizing the life trajectories of individual subjects making up the population. This is a direct consequence of the so-called classical ergodic theorems of Birkhoff and Wiener which has important implications for the way in which psychological and biomedical processes have to be analyzed. The classical ergodic theorems are introduced below in order to show the necessity of using an alternative approach which is valid for the analysis of intra-individual variation. This approach has to be based on single-subject time series analysis. Next an overview is presented of dynamic factor models for the analysis of multivariate time series and the various ways to fit these models to the data. We then turn to an empirical application of factor analysis of personality data obtained in a replicated time series design, showing substantial heterogeneity in intra-individual factorial personality structure. The next topic is entirely innovative--for the first time I present my new dynamic factor model for the analysis of nonstationary time series. In the conclusion I will sketch some biomedical research initiatives in which this new model will be used. PMID:17124797

  18. Design improvement and dynamic finite element analysis of novel ITI dental implant under dynamic chewing loads.

    PubMed

    Cheng, Yung-Chang; Lin, Deng-Huei; Jiang, Cho-Pei; Lee, Shyh-Yuan

    2015-01-01

    The main aim of this article was to introduce the application of a uniform design for experimental methods to drop the micromotion of a novel ITI dental implant model under the dynamic loads. Combining the characteristics of the traditional ITI and Nano-Tite implants, a new implant with concave holes has been constructed. Compared to the traditional ITI dental implant model, the micromotion of the new dental implant model was significantly reduced by explicit dynamic finite element analysis. From uniform design of experiments, the dynamic finite element analysis method was applied to caluculated the maximum micromotion of the full model. Finally, the chief design in all the experiment simulations which cause the minimum micromotion is picked as the advanced model of the design. Related to the original design, which was associated with a micromotion of 45.11 μm, the micromotion of the improved version was 31.37 μm, for an improvement rate of 30.5%. PMID:26406049

  19. Dynamical glucometry: use of multiscale entropy analysis in diabetes.

    PubMed

    Costa, Madalena D; Henriques, Teresa; Munshi, Medha N; Segal, Alissa R; Goldberger, Ary L

    2014-09-01

    Diabetes mellitus (DM) is one of the world's most prevalent medical conditions. Contemporary management focuses on lowering mean blood glucose values toward a normal range, but largely ignores the dynamics of glucose fluctuations. We probed analyte time series obtained from continuous glucose monitor (CGM) sensors. We show that the fluctuations in CGM values sampled every 5 min are not uncorrelated noise. Next, using multiscale entropy analysis, we quantified the complexity of the temporal structure of the CGM time series from a group of elderly subjects with type 2 DM and age-matched controls. We further probed the structure of these CGM time series using detrended fluctuation analysis. Our findings indicate that the dynamics of glucose fluctuations from control subjects are more complex than those of subjects with type 2 DM over time scales ranging from about 5 min to 5 h. These findings support consideration of a new framework, dynamical glucometry, to guide mechanistic research and to help assess and compare therapeutic interventions, which should enhance complexity of glucose fluctuations and not just lower mean and variance of blood glucose levels. PMID:25273219

  20. Analysis of dynamic voluntary muscle contractions in Parkinson's disease.

    PubMed

    Rissanen, Saara M; Kankaanpää, Markku; Tarvainen, Mika P; Meigal, Alexander Yu; Nuutinen, Juho; Tarkka, Ina M; Airaksinen, Olavi; Karjalainen, Pasi A

    2009-09-01

    A novel method for discrimination of dynamic muscle contractions between patients with Parkinson's disease (PD) and healthy controls on the basis of surface electromyography (EMG) and acceleration measurements is presented. In this method, dynamic EMG and acceleration measurements are analyzed using nonlinear methods and wavelets. Ten parameters capturing Parkinson's disease (PD) characteristic features in the measured signals are extracted. Each parameter is computed as time-varying, and for elbow flexion and extension movements separately. For discrimination between subjects, the dimensionality of the feature vectors formed from these parameters is reduced using a principal component approach. The cluster analysis of the low-dimensional feature vectors is then performed for flexion and extension movements separately. The EMG and acceleration data measured from 49 patients with PD and 59 healthy controls are used for analysis. According to clustering results, the method could discriminate 80 % of patient extension movements from 87 % of control extension movements, and 73 % of patient flexion movements from 82 % of control flexion movements. The results show that dynamic EMG and acceleration measurements can be informative for assessing neuromuscular dysfunction in PD, and furthermore, they may help in the objective clinical assessment of the disease. PMID:19497811

  1. Dynamic self-guiding analysis of Alzheimer's disease

    PubMed Central

    Kurakin, Alexei; Bredesen, Dale E.

    2015-01-01

    We applied a self-guiding evolutionary algorithm to initiate the synthesis of the Alzheimer's disease-related data and literature. A protein interaction network associated with amyloid-beta precursor protein (APP) and a seed model that treats Alzheimer's disease as progressive dysregulation of APP-associated signaling were used as dynamic “guides” and structural “filters” in the recursive search, analysis, and assimilation of data to drive the evolution of the seed model in size, detail, and complexity. Analysis of data and literature across sub-disciplines and system-scale discovery platforms suggests a key role of dynamic cytoskeletal connectivity in the stability, plasticity, and performance of multicellular networks and architectures. Chronic impairment and/or dysregulation of cell adhesions/synapses, cytoskeletal networks, and/or reversible epithelial-to-mesenchymal-like transitions, which enable and mediate the stable and coherent yet dynamic and reconfigurable multicellular architectures, may lead to the emergence and persistence of the disordered, wound-like pockets/microenvironments of chronically disconnected cells. Such wound-like microenvironments support and are supported by pro-inflammatory, pro-secretion, de-differentiated cellular phenotypes with altered metabolism and signaling. The co-evolution of wound-like microenvironments and their inhabitants may lead to the selection and stabilization of degenerated cellular phenotypes, via acquisition of epigenetic modifications and mutations, which eventually result in degenerative disorders such as cancer and Alzheimer's disease. PMID:26041885

  2. Selecting Earthquake Records for Nonlinear Dynamic Analysis of Structures

    SciTech Connect

    Rodriguez, Mario E.

    2008-07-08

    An area in earthquake risk reduction that needs an urgent examination is the selection of earthquake records for nonlinear dynamic analysis of structures. An often-mentioned shortcoming from results of nonlinear dynamic analyses of structures is that these results are limited to the type of records that these analyses use as input data. This paper proposes a procedure for selecting earthquake records for nonlinear dynamic analysis of structures. This procedure uses a seismic damage index evaluated using the hysteretic energy dissipated by a Single Degree of Freedom System (SDOF) representing a multi-degree-of freedom structure responding to an earthquake record, and the plastic work capacity of the system at collapse. The type of structural system is considered using simple parameters. The proposed method is based on the evaluation of the damage index for a suite of earthquake records and a selected type of structural system. A set of 10 strong ground motion records is analyzed to show an application of the proposed procedure for selecting earthquake records for structural design.

  3. Dynamical glucometry: Use of multiscale entropy analysis in diabetes

    NASA Astrophysics Data System (ADS)

    Costa, Madalena D.; Henriques, Teresa; Munshi, Medha N.; Segal, Alissa R.; Goldberger, Ary L.

    2014-09-01

    Diabetes mellitus (DM) is one of the world's most prevalent medical conditions. Contemporary management focuses on lowering mean blood glucose values toward a normal range, but largely ignores the dynamics of glucose fluctuations. We probed analyte time series obtained from continuous glucose monitor (CGM) sensors. We show that the fluctuations in CGM values sampled every 5 min are not uncorrelated noise. Next, using multiscale entropy analysis, we quantified the complexity of the temporal structure of the CGM time series from a group of elderly subjects with type 2 DM and age-matched controls. We further probed the structure of these CGM time series using detrended fluctuation analysis. Our findings indicate that the dynamics of glucose fluctuations from control subjects are more complex than those of subjects with type 2 DM over time scales ranging from about 5 min to 5 h. These findings support consideration of a new framework, dynamical glucometry, to guide mechanistic research and to help assess and compare therapeutic interventions, which should enhance complexity of glucose fluctuations and not just lower mean and variance of blood glucose levels.

  4. Method for chromium analysis and speciation

    DOEpatents

    Aiken, Abigail M.; Peyton, Brent M.; Apel, William A.; Petersen, James N.

    2004-11-02

    A method of detecting a metal in a sample comprising a plurality of metal is disclosed. The method comprises providing the sample comprising a metal to be detected. The sample is added to a reagent solution comprising an enzyme and a substrate, where the enzyme is inhibited by the metal to be detected. An array of chelating agents is used to eliminate the inhibitory effects of additional metals in the sample. An enzymatic activity in the sample is determined and compared to an enzymatic activity in a control solution to detect the metal to be detected. A method of determining a concentration of the metal in the sample is also disclosed. A method of detecting a valence state of a metal is also disclosed.

  5. Speciation And Colloid Transport of Arsenic From Mine Tailings

    SciTech Connect

    Slowey, A.J.; Johnson, S.B.; Newville, M.; Brown, G.E., Jr.

    2007-07-13

    In addition to affecting biogeochemical transformations, the speciation of As also influences its transport from tailings at inoperative mines. The speciation of As in tailings from the Sulfur Bank Mercury Mine site in Clear Lake, California (USA) (a hot-spring Hg deposit) and particles mobilized from these tailings have been examined during laboratory-column experiments. Solutions containing two common, plant-derived organic acids (oxalic and citric acid) were pumped at 13 pore volumes d{sup -1} through 25 by 500 mm columns of calcined Hg ore, analogous to the pedogenesis of tailings. Chemical analysis of column effluent indicated that all of the As mobilized was particulate (1.5 mg, or 6% of the total As in the column through 255 pore volumes of leaching). Arsenic speciation was evaluated using X-ray absorption spectroscopy (XAS), indicating the dominance of arsenate [As(V)] sorbed to poorly crystalline Fe(III)-(hydr)oxides and coprecipitated with jarosite [KFe{sub 3}(SO{sub 4}, AsO{sub 4}){sub 2}(OH){sub 6}] with no detectable primary or secondary minerals in the tailings and mobilized particles. Sequential chemical extractions (SCE) of <45 {micro}m mine tailings fractions also suggest that As occurs adsorbed to Fe (hydr)oxides (35%) and coprecipitated within poorly crystalline phases (45%). In addition, SCEs suggest that As is associated with 1 N acid-soluble phases such as carbonate minerals (20%) and within crystalline Fe-(hydr)oxides (10%). The finding that As is transported from these mine tailings dominantly as As(V) adsorbed to Fe (hydr)oxides or coprecipitated within hydroxysulfates such as jarosite suggests that As release from soils and sediments contaminated with tailings will be controlled by either organic acid-promoted dissolution or reductive dissolution of host phases.

  6. Ecological speciation in tropical reef fishes

    PubMed Central

    Rocha, Luiz A; Robertson, D. Ross; Roman, Joe; Bowen, Brian W

    2005-01-01

    The high biodiversity in tropical seas provides a long-standing challenge to allopatric speciation models. Physical barriers are few in the ocean and larval dispersal is often extensive, a combination that should reduce opportunities for speciation. Yet coral reefs are among the most species-rich habitats in the world, indicating evolutionary processes beyond conventional allopatry. In a survey of mtDNA sequences of five congeneric west Atlantic reef fishes (wrasses, genus Halichoeres) with similar dispersal potential, we observed phylogeographical patterns that contradict expectations of geographical isolation, and instead indicate a role for ecological speciation. In Halichoeres bivittatus and the species pair Halichoeres radiatus/brasiliensis, we observed strong partitions (3.4% and 2.3% divergence, respectively) between adjacent and ecologically distinct habitats, but high genetic connectivity between similar habitats separated by thousands of kilometres. This habitat partitioning is maintained even at a local scale where H. bivittatus lineages are segregated between cold- and warm-water habitats in both Bermuda and Florida. The concordance of evolutionary partitions with habitat types, rather than conventional biogeographical barriers, indicates parapatric ecological speciation, in which adaptation to alternative environmental conditions in adjacent locations overwhelms the homogenizing effect of dispersal. This mechanism can explain the long-standing enigma of high biodiversity in coral reef faunas. PMID:15817431

  7. NICKEL SPECIATION OF RESIDUAL OIL ASH

    EPA Science Inventory

    EPA GRANT NUMBER: R827649C002
    Title: Nickel Speciation Of Residual Oil Ash
    Investigators: Kevin C. Galbreath, John Won, Frank E. Huggins, Gerald P. Huffman, Christopher J. Zygarlicke, Donald L. Toman
    Institution: University of North Dakota<...

  8. Speciation: Genomic Archipelagos in a Crater Lake.

    PubMed

    Ronco, Fabrizia; Salzburger, Walter

    2016-03-01

    The opening stages of speciation remain poorly understood, especially from a genomic perspective. The genomes of newly discovered crater-lake cichlid fish shed light on the early phases of diversification and suggest that selection acts on multiple genomic regions. PMID:26954438

  9. Chromosome speciation: Humans, Drosophila, and mosquitoes

    PubMed Central

    Ayala, Francisco J.; Coluzzi, Mario

    2005-01-01

    Chromosome rearrangements (such as inversions, fusions, and fissions) may play significant roles in the speciation between parapatric (contiguous) or partly sympatric (geographically overlapping) populations. According to the “hybrid-dysfunction” model, speciation occurs because hybrids with heterozygous chromosome rearrangements produce dysfunctional gametes and thus have low reproductive fitness. Natural selection will, therefore, promote mutations that reduce the probability of intercrossing between populations carrying different rearrangements and thus promote their reproductive isolation. This model encounters a disabling difficulty: namely, how to account for the spread in a population of a chromosome rearrangement after it first arises as a mutation in a single individual. The “suppressed-recombination” model of speciation points out that chromosome rearrangements act as a genetic filter between populations. Mutations associated with the rearranged chromosomes cannot flow from one to another population, whereas genetic exchange will freely occur between colinear chromosomes. Mutations adaptive to local conditions will, therefore, accumulate differentially in the protected chromosome regions so that parapatric or partially sympatric populations will genetically differentiate, eventually evolving into different species. The speciation model of suppressed recombination has recently been tested by gene and DNA sequence comparisons between humans and chimpanzees, between Drosophila species, and between species related to Anopheles gambiae, the vector of malignant malaria in Africa. PMID:15851677

  10. Speciation of VOCs from Animal Feeding Operations

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The Environmental Pollution Agency (EPA) air consent agreement with animal feeding operations (AFO) specifies the use of EPA TO-15 for the speciation of volatile organic compounds (VOC) emitted from these facilities. However, compounds emitted from AFO are often both volatile and highly polar chara...

  11. Characterization of Technetium Speciation in Cast Stone

    SciTech Connect

    Um, Wooyong; Jung, Hun Bok; Wang, Guohui; Westsik, Joseph H.; Peterson, Reid A.

    2013-11-11

    This report describes the results from laboratory tests performed at Pacific Northwest National Laboratory (PNNL) for the U.S. Department of Energy (DOE) EM-31 Support Program (EMSP) subtask, “Production and Long-Term Performance of Low Temperature Waste Forms” to provide additional information on technetium (Tc) speciation characterization in the Cast Stone waste form. To support the use of Cast Stone as an alternative to vitrification for solidifying low-activity waste (LAW) and as the current baseline waste form for secondary waste streams at the Hanford Site, additional understanding of Tc speciation in Cast Stone is needed to predict the long-term Tc leachability from Cast Stone and to meet the regulatory disposal-facility performance requirements for the Integrated Disposal Facility (IDF). Characterizations of the Tc speciation within the Cast Stone after leaching under various conditions provide insights into how the Tc is retained and released. The data generated by the laboratory tests described in this report provide both empirical and more scientific information to increase our understanding of Tc speciation in Cast Stone and its release mechanism under relevant leaching processes for the purpose of filling data gaps and to support the long-term risk and performance assessments of Cast Stone in the IDF at the Hanford Site.

  12. ELEMENTAL SPECIATION IN ENVIRONMENTAL EXPOSURE ASSESSMENT MATRICES

    EPA Science Inventory

    Arsenic and tin are two trace metals where exposure assessments have moved towards a speciation based approach because the toxicity is very chemical form dependent. This toxicity difference can be one of many factors which influence the formulation of certain regulations. For a...

  13. Heavy metal speciation in the composting process.

    PubMed

    Greenway, Gillian M; Song, Qi Jun

    2002-04-01

    Composting is one of the more efficient and environment friendly methods of solid waste disposal and has many advantages when compared with landfill disposal on which the UK and Ireland are currently heavily dependent. Composting is a very complicated process involving intensive microbial activity and the detailed mechanisms of the process have yet to be fully understood. Metal speciation information can provide an insight into the metal-microbial interaction and would help in the evaluation of the quality of compost. This would facilitate the exploitation of composts in remediation of heavy metal contaminated land. In this work a systematic approach to metal speciation in compost has been taken by applying the three-step method for operationally defined metal speciation of soils and sediments, developed by the European Commission's Standards, Measurement and Testing Programme to monitor the change in metal speciation with time (up to 106 days) for four different waste composting processes. The results have shown that in general metals become less available for the first extraction step as the composting process proceeds. This implies that composting tends to redistribute the metals from more labile forms to more fixed forms which may explain why the application of composts could be useful for with heavy metal contaminated land. There are exceptions to this trend and in some cases, certain metals appear to behave differently depending on the source of the compost. PMID:11993774

  14. EFFECT OF SCR CATALYST ON MERCURY SPECIATION

    EPA Science Inventory

    A pilot-scale research study was conducted to investigate the effect of selective catalytic reduction (SCR) on elemental mercury speciation in bituminous and subbituminous coal combustion flue gases. Three different Illinois bituminous coals and one Powder River Basin (PRB) coal...

  15. Analysis of a model for the dynamics of prions II

    NASA Astrophysics Data System (ADS)

    Engler, Hans; Pruss, Jan; Webb, Glenn F.

    2006-12-01

    A new mathematical model for the dynamics of prion proliferation involving an ordinary differential equation coupled with a partial integro-differential equation is analyzed, continuing the work in [J. Pruss, L. Pujo-Menjouet, G.F. Webb, R. Zacher, Analysis of a model for the dynamics of prions, Discrete Contin. Dyn. Syst. 6 (2006) 225-235]. We show the well-posedness of this problem in its natural phase space , i.e., there is a unique global semiflow on Z+ associated to the problem. A theorem of threshold type is derived for this model which is typical for mathematical epidemics. If a certain combination of kinetic parameters is below or at the threshold, there is a unique steady state, the disease-free equilibrium, which is globally asymptotically stable in Z+; above the threshold it is unstable, and there is another unique steady state, the disease equilibrium, which inherits that property.

  16. Application of Control Volume Analysis to Cerebrospinal Fluid Dynamics

    NASA Astrophysics Data System (ADS)

    Wei, Timothy; Cohen, Benjamin; Anor, Tomer; Madsen, Joseph

    2011-11-01

    Hydrocephalus is among the most common birth defects and may not be prevented nor cured. Afflicted individuals face serious issues, which at present are too complicated and not well enough understood to treat via systematic therapies. This talk outlines the framework and application of a control volume methodology to clinical Phase Contrast MRI data. Specifically, integral control volume analysis utilizes a fundamental, fluid dynamics methodology to quantify intracranial dynamics within a precise, direct, and physically meaningful framework. A chronically shunted, hydrocephalic patient in need of a revision procedure was used as an in vivo case study. Magnetic resonance velocity measurements within the patient's aqueduct were obtained in four biomedical state and were analyzed using the methods presented in this dissertation. Pressure force estimates were obtained, showing distinct differences in amplitude, phase, and waveform shape for different intracranial states within the same individual. Thoughts on the physiological and diagnostic research and development implications/opportunities will be presented.

  17. Analysis methods for wind turbine control and electrical system dynamics

    NASA Technical Reports Server (NTRS)

    Hinrichsen, E. N.

    1995-01-01

    The integration of new energy technologies into electric power systems requires methods which recognize the full range of dynamic events in both the new generating unit and the power system. Since new energy technologies are initially perceived as small contributors to large systems, little attention is generally paid to system integration, i.e. dynamic events in the power system are ignored. As a result, most new energy sources are only capable of base-load operation, i.e. they have no load following or cycling capability. Wind turbines are no exception. Greater awareness of this implicit (and often unnecessary) limitation is needed. Analysis methods are recommended which include very low penetration (infinite bus) as well as very high penetration (stand-alone) scenarios.

  18. Employment of CB models for non-linear dynamic analysis

    NASA Technical Reports Server (NTRS)

    Klein, M. R. M.; Deloo, P.; Fournier-Sicre, A.

    1990-01-01

    The non-linear dynamic analysis of large structures is always very time, effort and CPU consuming. Whenever possible the reduction of the size of the mathematical model involved is of main importance to speed up the computational procedures. Such reduction can be performed for the part of the structure which perform linearly. Most of the time, the classical Guyan reduction process is used. For non-linear dynamic process where the non-linearity is present at interfaces between different structures, Craig-Bampton models can provide a very rich information, and allow easy selection of the relevant modes with respect to the phenomenon driving the non-linearity. The paper presents the employment of Craig-Bampton models combined with Newmark direct integration for solving non-linear friction problems appearing at the interface between the Hubble Space Telescope and its solar arrays during in-orbit maneuvers. Theory, implementation in the FEM code ASKA, and practical results are shown.

  19. Application of tire dynamics to aircraft landing gear design analysis

    NASA Technical Reports Server (NTRS)

    Black, R. J.

    1983-01-01

    The tire plays a key part in many analyses used for design of aircraft landing gear. Examples include structural design of wheels, landing gear shimmy, brake whirl, chatter and squeal, complex combination of chatter and shimmy on main landing gear (MLG) systems, anti-skid performance, gear walk, and rough terrain loads and performance. Tire parameters needed in the various analyses are discussed. Two tire models are discussed for shimmy analysis, the modified Moreland approach and the von Schlippe-Dietrich approach. It is shown that the Moreland model can be derived from the Von Schlippe-Dietrich model by certain approximations. The remaining analysis areas are discussed in general terms and the tire parameters needed for each are identified. Accurate tire data allows more accurate design analysis and the correct prediction of dynamic performance of aircraft landing gear.

  20. Managing Performance Analysis with Dynamic Statistical Projection Pursuit

    SciTech Connect

    Vetter, J.S.; Reed, D.A.

    2000-05-22

    Computer systems and applications are growing more complex. Consequently, performance analysis has become more difficult due to the complex, transient interrelationships among runtime components. To diagnose these types of performance issues, developers must use detailed instrumentation to capture a large number of performance metrics. Unfortunately, this instrumentation may actually influence the performance analysis, leading the developer to an ambiguous conclusion. In this paper, we introduce a technique for focusing a performance analysis on interesting performance metrics. This technique, called dynamic statistical projection pursuit, identifies interesting performance metrics that the monitoring system should capture across some number of processors. By reducing the number of performance metrics, projection pursuit can limit the impact of instrumentation on the performance of the target system and can reduce the volume of performance data.

  1. Analysis of dynamic deformation processes with adaptive KALMAN-filtering

    NASA Astrophysics Data System (ADS)

    Eichhorn, Andreas

    2007-05-01

    In this paper the approach of a full system analysis is shown quantifying a dynamic structural ("white-box"-) model for the calculation of thermal deformations of bar-shaped machine elements. The task was motivated from mechanical engineering searching new methods for the precise prediction and computational compensation of thermal influences in the heating and cooling phases of machine tools (i.e. robot arms, etc.). The quantification of thermal deformations under variable dynamic loads requires the modelling of the non-stationary spatial temperature distribution inside the object. Based upon FOURIERS law of heat flow the high-grade non-linear temperature gradient is represented by a system of partial differential equations within the framework of a dynamic Finite Element topology. It is shown that adaptive KALMAN-filtering is suitable to quantify relevant disturbance influences and to identify thermal parameters (i.e. thermal diffusivity) with a deviation of only 0,2%. As result an identified (and verified) parametric model for the realistic prediction respectively simulation of dynamic temperature processes is presented. Classifying the thermal bend as the main deformation quantity of bar-shaped machine tools, the temperature model is extended to a temperature deformation model. In lab tests thermal load steps are applied to an aluminum column. Independent control measurements show that the identified model can be used to predict the columns bend with a mean deviation (r.m.s.) smaller than 10 mgon. These results show that the deformation model is a precise predictor and suitable for realistic simulations of thermal deformations. Experiments with modified heat sources will be necessary to verify the model in further frequency spectra of dynamic thermal loads.

  2. Unveiling Hidden Dynamics of Hippo Signalling: A Systems Analysis

    PubMed Central

    Shin, Sung-Young; Nguyen, Lan K.

    2016-01-01

    The Hippo signalling pathway has recently emerged as an important regulator of cell apoptosis and proliferation with significant implications in human diseases. In mammals, the pathway contains the core kinases MST1/2, which phosphorylate and activate LATS1/2 kinases. The pro-apoptotic function of the MST/LATS signalling axis was previously linked to the Akt and ERK MAPK pathways, demonstrating that the Hippo pathway does not act alone but crosstalks with other signalling pathways to coordinate network dynamics and cellular outcomes. These crosstalks were characterised by a multitude of complex regulatory mechanisms involving competitive protein-protein interactions and phosphorylation mediated feedback loops. However, how these different mechanisms interplay in different cellular contexts to drive the context-specific network dynamics of Hippo-ERK signalling remains elusive. Using mathematical modelling and computational analysis, we uncovered that the Hippo-ERK network can generate highly diverse dynamical profiles that can be clustered into distinct dose-response patterns. For each pattern, we offered mechanistic explanation that defines when and how the observed phenomenon can arise. We demonstrated that Akt displays opposing, dose-dependent functions towards ERK, which are mediated by the balance between the Raf-1/MST2 protein interaction module and the LATS1 mediated feedback regulation. Moreover, Ras displays a multi-functional role and drives biphasic responses of both MST2 and ERK activities; which are critically governed by the competitive protein interaction between MST2 and Raf-1. Our study represents the first in-depth and systematic analysis of the Hippo-ERK network dynamics and provides a concrete foundation for future studies. PMID:27527217

  3. Unveiling Hidden Dynamics of Hippo Signalling: A Systems Analysis.

    PubMed

    Shin, Sung-Young; Nguyen, Lan K

    2016-01-01

    The Hippo signalling pathway has recently emerged as an important regulator of cell apoptosis and proliferation with significant implications in human diseases. In mammals, the pathway contains the core kinases MST1/2, which phosphorylate and activate LATS1/2 kinases. The pro-apoptotic function of the MST/LATS signalling axis was previously linked to the Akt and ERK MAPK pathways, demonstrating that the Hippo pathway does not act alone but crosstalks with other signalling pathways to coordinate network dynamics and cellular outcomes. These crosstalks were characterised by a multitude of complex regulatory mechanisms involving competitive protein-protein interactions and phosphorylation mediated feedback loops. However, how these different mechanisms interplay in different cellular contexts to drive the context-specific network dynamics of Hippo-ERK signalling remains elusive. Using mathematical modelling and computational analysis, we uncovered that the Hippo-ERK network can generate highly diverse dynamical profiles that can be clustered into distinct dose-response patterns. For each pattern, we offered mechanistic explanation that defines when and how the observed phenomenon can arise. We demonstrated that Akt displays opposing, dose-dependent functions towards ERK, which are mediated by the balance between the Raf-1/MST2 protein interaction module and the LATS1 mediated feedback regulation. Moreover, Ras displays a multi-functional role and drives biphasic responses of both MST2 and ERK activities; which are critically governed by the competitive protein interaction between MST2 and Raf-1. Our study represents the first in-depth and systematic analysis of the Hippo-ERK network dynamics and provides a concrete foundation for future studies. PMID:27527217

  4. Adding to the Mercury Speciation Toolbox

    NASA Astrophysics Data System (ADS)

    Fitts, J. P.; Northrup, P. A.; Chidambaram, D.; Kalb, P. D.

    2007-12-01

    Mercury was used to separate lithium-6 isotope for weapons production at the Y-12 Plant in Oak Ridge, TN in the 1950s and 1960s. A large portion of the waste Hg entered the environment and continues to move throughout the sub-surface and surface waters in the area. Environmental management of Hg contamination within this complex hydrologic system, where Hg speciation and the mobile fraction have been found to vary widely, will require ongoing characterization and predictive modeling of Hg speciation. State-of-the-art spectroscopic tools that can directly probe Hg speciation in preserved aqueous and sediment samples with greater sensitivity, however, are required to determine rates and mechanisms of biogeochemical reactions. We will present the first results demonstrating the use of x-ray absorption spectroscopy (XAS) at the Hg M5 edge (2295 eV) to fingerprint Hg species. Heavy-metal M5 absorption edges can have very sharp features due to local electron transitions, and therefore, we are developing this edge as a tool for quantitative measurement of Hg species. In addition, sulfur speciation using the sulfur K absorption edge, which is at a similar energy (2472 eV), can be measured in the same scan as the Hg M5 edge. Potentially important organic and inorganic sulfur species (sulfide, disulfide, elemental sulfur, sulfite and sulfate) are readily differentiated, and thereby, provides an independent method for monitoring the redox state of the system along with changes in S-Hg bonding. We will also present x-ray microprobe 2-D concentration maps of Hg and other elements at the grain and pore scales to identify its microscopic distribution and chemical associations. When used in combination with established sequential extraction and direct spectroscopic methods, the addition of XAS at the Hg M5 edge should provide a significant advancement in the determination of Hg speciation in complex biogeochemical environments.

  5. Quantitative cw Overhauser Dynamic Nuclear Polarization for the Analysis of Local Water Dynamics

    PubMed Central

    Franck, John M.; Pavlova, Anna; Scott, John A.; Han, Songi

    2013-01-01

    Liquid state Overhauser Effect Dynamic Nuclear Polarization (ODNP) has experienced a recent resurgence of interest. The ODNP technique described here relies on the double resonance of electron spin resonance (ESR) at the most common, i.e. X-band (~ 10 GHz), frequency and 1H nuclear magnetic resonance (NMR) at ~ 15 MHz. It requires only a standard continuous wave (cw) ESR spectrometer with an NMR probe inserted or built into an X-band cavity. Our focus lies on reviewing a new and powerful manifestation of ODNP as a high frequency NMR relaxometry tool that probes dipolar cross relaxation between the electron spins and the 1H nuclear spins at X-band frequencies. This technique selectively measures the translational mobility of water within a volume extending 0.5–1.5 nm outward from a nitroxide radical spin probe that is attached to a targeted site of a macromolecule. This method has been applied to study the dynamics of water that hydrates or permeates the surface or interior of proteins, polymers, and lipid membrane vesicles. We begin by reviewing the recent advances that have helped develop ODNP into a tool for mapping the dynamic landscape of hydration water with sub-nanometer locality. In order to bind this work coherently together, and to place it in the context of the extensive body of research in the field of NMR relaxometry, we then rephrase the analytical model and extend the description of the ODNP-derived NMR signal enhancements. This extended model highlights several aspects of ODNP data analysis, including the importance of considering all possible effects of microwave sample heating, the need to consider the error associated with various relaxation rates, and the unique ability of ODNP to probe the electron–1H cross-relaxation process, which is uniquely sensitive to fast (tens of ps) dynamical processes. By implementing the relevant corrections in a stepwise fashion, this paper draws a consensus result from previous ODNP procedures, and then shows

  6. Macroevolutionary speciation rates are decoupled from the evolution of intrinsic reproductive isolation in Drosophila and birds.

    PubMed

    Rabosky, Daniel L; Matute, Daniel R

    2013-09-17

    The rate at which speciation occurs varies greatly among different kinds of organisms and is frequently assumed to result from species- or clade-specific factors that influence the rate at which populations acquire reproductive isolation. This premise leads to a fundamental prediction that has never been tested: Organisms that quickly evolve prezygotic or postzygotic reproductive isolation should have faster rates of speciation than organisms that slowly acquire reproductive isolation. We combined phylogenetic estimates of speciation rates from Drosophila and birds with a method for analyzing interspecific hybridization data to test whether the rate at which individual lineages evolve reproductive isolation predicts their macroevolutionary rate of species formation. We find that some lineages evolve reproductive isolation much more quickly than others, but this variation is decoupled from rates of speciation as measured on phylogenetic trees. For the clades examined here, reproductive isolation--especially intrinsic, postzygotic isolation--does not seem to be the rate-limiting control on macroevolutionary diversification dynamics. These results suggest that factors associated with intrinsic reproductive isolation may have less to do with the tremendous variation in species diversity across the evolutionary tree of life than is generally assumed. PMID:24003144

  7. Macroevolutionary speciation rates are decoupled from the evolution of intrinsic reproductive isolation in Drosophila and birds

    PubMed Central

    Rabosky, Daniel L.; Matute, Daniel R.

    2013-01-01

    The rate at which speciation occurs varies greatly among different kinds of organisms and is frequently assumed to result from species- or clade-specific factors that influence the rate at which populations acquire reproductive isolation. This premise leads to a fundamental prediction that has never been tested: Organisms that quickly evolve prezygotic or postzygotic reproductive isolation should have faster rates of speciation than organisms that slowly acquire reproductive isolation. We combined phylogenetic estimates of speciation rates from Drosophila and birds with a method for analyzing interspecific hybridization data to test whether the rate at which individual lineages evolve reproductive isolation predicts their macroevolutionary rate of species formation. We find that some lineages evolve reproductive isolation much more quickly than others, but this variation is decoupled from rates of speciation as measured on phylogenetic trees. For the clades examined here, reproductive isolation—especially intrinsic, postzygotic isolation—does not seem to be the rate-limiting control on macroevolutionary diversification dynamics. These results suggest that factors associated with intrinsic reproductive isolation may have less to do with the tremendous variation in species diversity across the evolutionary tree of life than is generally assumed. PMID:24003144

  8. Mathematical modeling of the effects of aerobic and anaerobic chelate bioegradation on actinide speciation.

    SciTech Connect

    Banaszak, J.E.; VanBriesen, J.; Rittmann, B.E.; Reed, D.T.

    1998-03-19

    Biodegradation of natural and anthropogenic chelating agents directly and indirectly affects the speciation, and, hence, the mobility of actinides in subsurface environments. We combined mathematical modeling with laboratory experimentation to investigate the effects of aerobic and anaerobic chelate biodegradation on actinide [Np(IV/V), Pu(IV)] speciation. Under aerobic conditions, nitrilotriacetic acid (NTA) biodegradation rates were strongly influenced by the actinide concentration. Actinide-chelate complexation reduced the relative abundance of available growth substrate in solution and actinide species present or released during chelate degradation were toxic to the organisms. Aerobic bio-utilization of the chelates as electron-donor substrates directly affected actinide speciation by releasing the radionuclides from complexed form into solution, where their fate was controlled by inorganic ligands in the system. Actinide speciation was also indirectly affected by pH changes caused by organic biodegradation. The two concurrent processes of organic biodegradation and actinide aqueous chemistry were accurately linked and described using CCBATCH, a computer model developed at Northwestern University to investigate the dynamics of coupled biological and chemical reactions in mixed waste subsurface environments. CCBATCH was then used to simulate the fate of Np during anaerobic citrate biodegradation. The modeling studies suggested that, under some conditions, chelate degradation can increase Np(IV) solubility due to carbonate complexation in closed aqueous systems.

  9. Development of a helicopter rotor/propulsion system dynamics analysis

    NASA Technical Reports Server (NTRS)

    Warmbrodt, W.; Hull, R.

    1982-01-01

    A time-domain analysis of coupled engine/drive train/rotor dynamics of a twin-engine, single main rotor helicopter model has been performed. The analysis incorporates an existing helicopter model with nonlinear simulations of a helicopter turboshaft engine and its fuel controller. System dynamic behavior is studied using the resulting simulation which included representations for the two engines and their fuel controllers, drive system, main rotor, tail rotor, and aircraft rigid body motions. Time histories of engine and rotor RPM response to pilot control inputs are studied for a baseline rotor and propulsion system model. Sensitivity of rotor RPM droop to fuel controller gain changes and collective input feed-forward gain changes are studied. Torque-load-sharing between the two engines is investigated by making changes in the fuel controller feedback paths. A linear engine model is derived from the nonlinear engine simulation and used in the coupled system analysis. This four-state linear engine model is then reduced to a three-state model. The effect of this simplification on coupled system behavior is shown.

  10. Nonlinear dynamical analysis of turbulence in a stable cloud layer.

    PubMed

    Palmer, A. J.

    1995-03-01

    An eight mode truncated spectral model based on Burgers' approximation to the one-dimensional Navier-Stokes equations is used to compute the Lyapunov dimension of the dynamical attractor for turbulence in a stable cloud layer. The model results are compared with the correlation dimension obtained earlier from a time series of radar Doppler and reflectivity signals from a turbulent layer in a marine stratus cloud. The analysis supports a weak coupling explanation for the lower correlation dimension found for the reflectivity time series compared with that for the Doppler time series. Turbulent Prandtl number emerges from the analysis as a flow parameter which can enlarge the dimension of the model's dynamical attractor, but the attractor dimension computed for the model remains lower than the radar Doppler correlation dimension. Linear stability analysis of the model's equilibrium states suggests that a nontruncated version of the model will possess an attractor which is also of lower dimension than the radar Doppler correlation dimension. (c) 1995 American Institute of Physics. PMID:12780184

  11. Probing cytoskeleton dynamics by intracellular particle transport analysis

    NASA Astrophysics Data System (ADS)

    Götz, M.; Hodeck, K. F.; Witzel, P.; Nandi, A.; Lindner, B.; Heinrich, D.

    2015-07-01

    All cellular functions arise from the transport of molecules through a heterogeneous, highly dynamic cell interior for intracellular signaling. Here, the impact of intracellular architecture and cytoskeleton dynamics on transport processes is revealed by high-resolution single particle tracking within living cells, in combination with time-resolved local mean squared displacement (I-MSD) analysis. We apply the I-MSD analysis to trajectories of 200 nm silica particles within living cells of Dictyostelium discoideum obtained by high resolution spinning disc confocal microscopy with a frame rate of 100 fps and imaging in one fixed focal plane. We investigate phases of motor-driven active transport and subdiffusion, normal diffusion, as well as superdiffusion with high spatial and temporal resolution. Active directed intracellular motion is attributed to microtubule associated molecular motor driven transport with average absolute velocities of 2.8 μm s-1 for 200 nm diameter particles. Diffusion processes of these particles within wild-type cells are found to exhibit diffusion constants ranging across two orders of magnitude from subdiffusive to superdiffusive behavior. This type of analysis might prove of ample importance for medical applications, like targeted drug treatment of cells by nano-sized carriers or innovative diagnostic assays.

  12. Analysis on dynamic tensile extrusion behavior of UFG OFHC Cu

    NASA Astrophysics Data System (ADS)

    Park, Kyung-Tae; Park, Leeju; Kim, Hak Jun; Kim, Seok Bong; Lee, Chong Soo

    2014-08-01

    Dynamic tensile extrusion (DTE) tests with the strain rate order of ~105 s-1 were conducted on coarse grained (CG) Cu and ultrafine grained (UFG) Cu. ECAP of 16 passes with route Bc was employed to fabricate UFG Cu. DTE tests were carried out by launching the sphere samples to the conical extrusion die at a speed of ~475 m/sec in a vacuumed gas gun system. UFG Cu was fragmented into 3 pieces and showed a DTE elongation of ~340%. CG Cu exhibited a larger DTE elongation of ~490% with fragmentation of 4 pieces. During DTE tests, dynamic recrystallization occurred in UFG Cu, but not in CG Cu. In order to examine the DTE behavior of CG Cu and UFG Cu under very high strain rates, a numerical analysis was undertaken by using a commercial finite element code (LS-DYNA 2D axis-symmetric model) with the Johnson - Cook model. The numerical analysis correctly predicted fragmentation and DTE elongation of CG Cu. But, the experimental DTE elongation of UFG Cu was much smaller than that predicted by the numerical analysis. This difference is discussed in terms of microstructural evolution of UFG Cu during DTE tests.

  13. Susceptibility-Based Analysis Of Dynamic Gadolinium Bolus Perfusion MRI

    PubMed Central

    Bonekamp, David; Barker, Peter B.; Leigh, Richard; van Zijl, Peter C.M.; Li, Xu

    2014-01-01

    Purpose An algorithm is developed for the reconstruction of dynamic, gadolinium (Gd) bolus MR perfusion images of the human brain, based on quantitative susceptibility mapping (QSM). Methods The method is evaluated in 5 perfusion scans obtained from 4 different patients scanned at 3T, and compared to the conventional analysis based on changes in the transverse relaxation rate ΔR2* and to theoretical predictions. QSM images were referenced to ventricular CSF for each dynamic of the perfusion sequence. Results Images of cerebral blood flow and blood volume were successfully reconstructed from the QSM-analysis, and were comparable to those reconstructed using ΔR2*. The magnitudes of the Gd-associated susceptibility effects in gray and white matter were consistent with theoretical predictions. Conclusion QSM-based analysis may have some theoretical advantages compared to ΔR2*, including a simpler relationship between signal change and Gd concentration. However, disadvantages are its much lower contrast-to-noise ratio, artifacts due to respiration and other effects, and more complicated reconstruction methods. More work is required to optimize data acquisition protocols for QSM-based perfusion imaging. PMID:24604343

  14. SIMA: Python software for analysis of dynamic fluorescence imaging data

    PubMed Central

    Kaifosh, Patrick; Zaremba, Jeffrey D.; Danielson, Nathan B.; Losonczy, Attila

    2014-01-01

    Fluorescence imaging is a powerful method for monitoring dynamic signals in the nervous system. However, analysis of dynamic fluorescence imaging data remains burdensome, in part due to the shortage of available software tools. To address this need, we have developed SIMA, an open source Python package that facilitates common analysis tasks related to fluorescence imaging. Functionality of this package includes correction of motion artifacts occurring during in vivo imaging with laser-scanning microscopy, segmentation of imaged fields into regions of interest (ROIs), and extraction of signals from the segmented ROIs. We have also developed a graphical user interface (GUI) for manual editing of the automatically segmented ROIs and automated registration of ROIs across multiple imaging datasets. This software has been designed with flexibility in mind to allow for future extension with different analysis methods and potential integration with other packages. Software, documentation, and source code for the SIMA package and ROI Buddy GUI are freely available at http://www.losonczylab.org/sima/. PMID:25295002

  15. Towards dynamic metabolic flux analysis in CHO cell cultures.

    PubMed

    Ahn, Woo Suk; Antoniewicz, Maciek R

    2012-01-01

    Chinese hamster ovary (CHO) cells are the most widely used mammalian cell line for biopharmaceutical production, with a total global market approaching $100 billion per year. In the pharmaceutical industry CHO cells are grown in fed-batch culture, where cellular metabolism is characterized by high glucose and glutamine uptake rates combined with high rates of ammonium and lactate secretion. The metabolism of CHO cells changes dramatically during a fed-batch culture as the cells adapt to a changing environment and transition from exponential growth phase to stationary phase. Thus far, it has been challenging to study metabolic flux dynamics in CHO cell cultures using conventional metabolic flux analysis techniques that were developed for systems at metabolic steady state. In this paper we review progress on flux analysis in CHO cells and techniques for dynamic metabolic flux analysis. Application of these new tools may allow identification of intracellular metabolic bottlenecks at specific stages in CHO cell cultures and eventually lead to novel strategies for improving CHO cell metabolism and optimizing biopharmaceutical process performance. PMID:22102428

  16. Stress analysis of the subsea dynamic riser baseprocess piping

    NASA Astrophysics Data System (ADS)

    Ju, Xuanze; Fang, Wei; Yin, Hanjun; Jiang, Ying

    2014-09-01

    Thesubsea dynamic riser base (SDRB) is an important piece of equipment for the floating production platform mooring system. One end is connected to the rigid pipeline, carrying a rigid pipeline thermal expansion load and the other end is connected to a flexible riser, carrying the dynamic load of the flexible riser, so its function is a transition connection between the flexible riser and the rigid pipeline which fixes the flexible riser on the seabed. On the other hand, as a typical subsea product, the design will satisfy the requirements of the standards for subsea products. By studying the stress analysisphilosophy of the topside piping and subsea pipeline, a physical model and procedure for piping stress analysis of the SDRB have been established. The conditions of the adverse design load have been considered, and a combination of the static load from the rigid pipeline and the dynamic load flexibility has also been optimized. And a comparative analysis between the AMSE, DNV and API standards for piping stress with the checking rules has been done. Because the SDRB belongs to the subsea pipeline terminal product, the use of DNV standards to check its process piping stress is recommended. Finally, the process piping stress of the SDRB has been calculated, and the results show that the jacket pipe and the carrier pipe stress of the SDRB process piping satisfy the DNV standards as a whole.The bulkhead cannot be accurately simulated by the AutoPIPE software which uses the FEA software ANSYS in the detailed analysis, but the checking results will still meet the requirements of the DNV standards.

  17. Lineage divergence and speciation in the Web-toed Salamanders (Plethodontidae: Hydromantes) of the Sierra Nevada, California.

    PubMed

    Rovito, Sean M

    2010-10-01

    Peripatric speciation and the importance of founder effects have long been controversial, and multilocus sequence data and coalescent methods now allow hypotheses of peripatric speciation to be tested in a rigorous manner. Using a multilocus phylogeographical data set for two species of salamanders (genus Hydromantes) from the Sierra Nevada of California, hypotheses of recent divergence by peripatric speciation and older, allopatric divergence were tested. Phylogeographical analysis revealed two divergent lineages within Hydromantes platycephalus, which were estimated to have diverged in the Pliocene. By contrast, a low-elevation species, Hydromantes brunus, diverged from within the northern lineage of H. platycephalus much more recently (mid-Pleistocene), during a time of major climatic change in the Sierra Nevada. Multilocus species tree estimation and coalescent estimates of divergence time, migration rate, and growth rate reject a scenario of ancient speciation of H. brunus with subsequent gene flow and introgression from H. platycephalus, instead supporting a more recent divergence with population expansion. Although the small, peripheral distribution of H. brunus suggests the possibility of peripatric speciation, the estimated founding population size of the species was too large to have allowed founder effects to be important in its divergence. These results provide evidence for both recent speciation, most likely tied to the climatic changes of the Pleistocene, and older lineage divergence, possibly due to geological events, and add to evidence that Pleistocene glacial cycles were an important driver of diversification in the Sierra Nevada. PMID:20854412

  18. Colonization and speciation of cave animals in the Philippines

    NASA Astrophysics Data System (ADS)

    Husana, D.; Yamamuro, M.; Kase, T.

    2012-12-01

    Island-like situation of caves resulted to species isolation while organism's phenotypic plasticity allows the animal to cope with the cave's environment. These conditions eventually lead to organism's speciation through genetic differentiation. Combined morphological and molecular analyses provided insights on the speciation events and colonization of the subterranean ecosystem. Morphological analysis of hypogean species, known as troglobite, and its epigean congeners showed the interesting differences in their characters. Troglobite exhibited cave adaptations such as degenerated eyesight, enlargement or elongation of ambulatory organs, loss of pigmentation and development of other useful organs that favors their survival in the dark cave environment. Molecular clock estimation based on the substitution rate of 0.88% per million years established for 16S rRNA for the grapsid crab genus Sesarma suggested that the troglobitic Sundathelphusa species colonized the cave habitat in Samar Island in the late Miocene epoch and started to diverge from its epigean ancestor ca. 5.92 mya. Interestingly, the five species of the genus Sundathelphusa from Bohol Island comprising of both hypogean and epigean species (S. cavernicola, S. sottoae, S. vediniki, S. urichi and S. boex) occupy a single clade with divergence time from its sister clade ca. 2.58 mya. This phenomenon suggests two possible interpretations of the existence of Bohol species: (1) they belong to a single species with regular genetic flow from their surface relative and that their character differences can be best interpreted as ecophenotypic, or, (2) the speciation event was very rapid and quite recent. Mitochondrial DNA sequences of 430 base pairs of the large subunit rRNA (16S rRNA) revealed the phylogenetic relationships of the genus Sundathelphusa suggesting a multiple colonizations of caves. The speciation events coincided with the timing of the eustatic sea level fluctuation and geologic changes in the

  19. Analysis of flexible aircraft longitudinal dynamics and handling qualities. Volume 1: Analysis methods

    NASA Technical Reports Server (NTRS)

    Waszak, M. R.; Schmidt, D. S.

    1985-01-01

    As aircraft become larger and lighter due to design requirements for increased payload and improved fuel efficiency, they will also become more flexible. For highly flexible vehicles, the handling qualities may not be accurately predicted by conventional methods. This study applies two analysis methods to a family of flexible aircraft in order to investigate how and when structural (especially dynamic aeroelastic) effects affect the dynamic characteristics of aircraft. The first type of analysis is an open loop model analysis technique. This method considers the effects of modal residue magnitudes on determining vehicle handling qualities. The second method is a pilot in the loop analysis procedure that considers several closed loop system characteristics. Volume 1 consists of the development and application of the two analysis methods described above.

  20. Fluid Dynamic and Stability Analysis of a Thin Liquid Sheet

    NASA Technical Reports Server (NTRS)

    McMaster, Matthew S.

    1992-01-01

    Interest in thin sheet flows has recently been renewed due to their potential application in space radiators. Theoretical and experimental studies of the fluid dynamics and stability of thin liquid sheet flows have been carried out in this thesis. A computer program was developed to determine the cross-sectional shape of the edge cylinder given the cross-sectional area of the edge cylinder. A stability analysis was performed on a non-planer liquid sheet. A study was conducted to determine the effects of air resistance on the sheet.

  1. Dynamic Analysis of Darrieus Vertical Axis Wind Turbine Rotors

    NASA Technical Reports Server (NTRS)

    Lobitz, D. W.

    1981-01-01

    The dynamic response characteristics of the vertical axis wind turbine (VAWT) rotor are important factors governing the safety and fatigue life of VAWT systems. The principal problems are the determination of critical rotor speeds (resonances) and the assessment of forced vibration response amplitudes. The solution to these problems is complicated by centrifugal and Coriolis effects which can have substantial influence on rotor resonant frequencies and mode shapes. The primary tools now in use for rotor analysis are described and discussed. These tools include a lumped spring mass model (VAWTDYN) and also finite-element based approaches. The accuracy and completeness of current capabilities are also discussed.

  2. Development of a rotorcraft. Propulsion dynamics interface analysis, volume 2

    NASA Technical Reports Server (NTRS)

    Hull, R.

    1982-01-01

    A study was conducted to establish a coupled rotor/propulsion analysis that would be applicable to a wide range of rotorcraft systems. The effort included the following tasks: (1) development of a model structure suitable for simulating a wide range of rotorcraft configurations; (2) defined a methodology for parameterizing the model structure to represent a particular rotorcraft; (3) constructing a nonlinear coupled rotor/propulsion model as a test case to use in analyzing coupled system dynamics; and (4) an attempt to develop a mostly linear coupled model derived from the complete nonlinear simulations. Documentation of the computer models developed is presented.

  3. Dynamic dielectric analysis for nondestructive cure monitoring and process control

    NASA Technical Reports Server (NTRS)

    Kranbuehl, D. E.; Delos, S. E.; Hoff, M. S.; Whitham, M. E.; Weller, L. W.

    1986-01-01

    Dynamic dielectric analysis (DDA) is an effective in situ NDE method that can monitor the reaction status in thermosets and the phase changes in thermoplastics, including slow reactions occuring late in the cure cycle and recrystallization during annealing. The effects of moisture and resin history on reaction rate can also be determined, as can ionic and dipolar contributions. The ionic mobility parameter is noted to be an excellent monitor of viscosity above the glass transition temperature. The ability of DDA to monitor cure rate variations in a thick section during autoclaving has been demonstrated.

  4. Dynamic analysis of large structures by modal synthesis techniques.

    NASA Technical Reports Server (NTRS)

    Hurty, W. C.; Hart, G. C.; Collins, J. D.

    1971-01-01

    Several criteria that may be used to evaluate the merits of some of the existing techniques for the dynamic analysis of large structures which involve division into substructures or components are examined. These techniques make use of component displacement modes to synthetize global systems of generalized coordinates and, for that reason, they have come to be known as modal synthesis or component mode methods. Two techniques have been found to be particularly useful - i.e., the modal synthesis method with fixed attachment modes, and the modal synthesis method with free attachment modes. These two methods are treated in detail, and general flow charts are presented for guidance in computer programming.

  5. Nonstationary Dynamics Data Analysis with Wavelet-SVD Filtering

    NASA Technical Reports Server (NTRS)

    Brenner, Marty; Groutage, Dale; Bessette, Denis (Technical Monitor)

    2001-01-01

    Nonstationary time-frequency analysis is used for identification and classification of aeroelastic and aeroservoelastic dynamics. Time-frequency multiscale wavelet processing generates discrete energy density distributions. The distributions are processed using the singular value decomposition (SVD). Discrete density functions derived from the SVD generate moments that detect the principal features in the data. The SVD standard basis vectors are applied and then compared with a transformed-SVD, or TSVD, which reduces the number of features into more compact energy density concentrations. Finally, from the feature extraction, wavelet-based modal parameter estimation is applied.

  6. SPAR improved structure/fluid dynamic analysis capability

    NASA Technical Reports Server (NTRS)

    Oden, J. T.; Pearson, M. L.

    1983-01-01

    The capability of analyzing a coupled dynamic system of flowing fluid and elastic structure was added to the SPAR computer code. A method, developed and adopted for use in SPAR utilizes the existing assumed stress hybrid plan element in SPAR. An operational mode was incorporated in SPAR which provides the capability for analyzing the flaw of a two dimensional, incompressible, viscous fluid within rigid boundaries. Equations were developed to provide for the eventual analysis of the interaction of such fluids with an elastic solid.

  7. Dynamic analysis of gas-core reactor system

    NASA Technical Reports Server (NTRS)

    Turner, K. H., Jr.

    1973-01-01

    A heat transfer analysis was incorporated into a previously developed model CODYN to obtain a model of open-cycle gaseous core reactor dynamics which can predict the heat flux at the cavity wall. The resulting model was used to study the sensitivity of the model to the value of the reactivity coefficients and to determine the system response for twenty specified perturbations. In addition, the model was used to study the effectiveness of several control systems in controlling the reactor. It was concluded that control drums located in the moderator region capable of inserting reactivity quickly provided the best control.

  8. Motion analysis of knee joint using dynamic volume images

    NASA Astrophysics Data System (ADS)

    Haneishi, Hideaki; Kohno, Takahiro; Suzuki, Masahiko; Moriya, Hideshige; Mori, Sin-ichiro; Endo, Masahiro

    2006-03-01

    Acquisition and analysis of three-dimensional movement of knee joint is desired in orthopedic surgery. We have developed two methods to obtain dynamic volume images of knee joint. One is a 2D/3D registration method combining a bi-plane dynamic X-ray fluoroscopy and a static three-dimensional CT, the other is a method using so-called 4D-CT that uses a cone-beam and a wide 2D detector. In this paper, we present two analyses of knee joint movement obtained by these methods: (1) transition of the nearest points between femur and tibia (2) principal component analysis (PCA) of six parameters representing the three dimensional movement of knee. As a preprocessing for the analysis, at first the femur and tibia regions are extracted from volume data at each time frame and then the registration of the tibia between different frames by an affine transformation consisting of rotation and translation are performed. The same transformation is applied femur as well. Using those image data, the movement of femur relative to tibia can be analyzed. Six movement parameters of femur consisting of three translation parameters and three rotation parameters are obtained from those images. In the analysis (1), axis of each bone is first found and then the flexion angle of the knee joint is calculated. For each flexion angle, the minimum distance between femur and tibia and the location giving the minimum distance are found in both lateral condyle and medial condyle. As a result, it was observed that the movement of lateral condyle is larger than medial condyle. In the analysis (2), it was found that the movement of the knee can be represented by the first three principal components with precision of 99.58% and those three components seem to strongly relate to three major movements of femur in the knee bend known in orthopedic surgery.

  9. Perturbation and nonlinear dynamic analysis of different singing styles.

    PubMed

    Butte, Caitlin J; Zhang, Yu; Song, Huangqiang; Jiang, Jack J

    2009-11-01

    Previous research has used perturbation analysis methods to study the singing voice. Using perturbation and nonlinear dynamic analysis (NDA) methods in conjunction may provide more accurate information on the singing voice and may distinguish vocal usage in different styles. Acoustic samples from different styles of singing were compared using nonlinear dynamic and perturbation measures. Twenty-six songs from different musical styles were obtained from an online music database (Rhapsody, RealNetworks, Inc., Seattle, WA). One-second samples were selected from each song for analysis. Perturbation analyses of jitter, shimmer, and signal-to-noise ratio and NDA of correlation dimension (D(2)) were performed on samples from each singing style. Percent jitter and shimmer median values were low normal for country (0.32% and 3.82%), musical theater (MT) (0.280% and 2.80%), jazz (0.440% and 2.34%), and soul (0.430% and 6.42%). The popular style had slightly higher median jitter and shimmer values (1.13% and 6.78%) than other singing styles, although this was not statistically significant. The opera singing style had median jitter of 0.520%, and yielded significantly high shimmer (P=0.001) of 7.72%. All six singing styles were measured reliably using NDA, indicating that operatic singing is notably more chaotic than other singing styles. Median correlation dimension values were low to normal, compared to healthy voices, in country (median D(2)=2.14), jazz (median D(2)=2.24), pop (median D(2)=2.60), MT (median D(2)=2.73), and soul (mean D(2)=3.26). Correlation dimension was significantly higher in opera (P<0.001) with median D(2)=6.19. In this study, acoustic analysis in opera singing gave significantly high values for shimmer and D(2), suggesting that it is more irregular than other singing styles; a previously unknown quality of opera singing. Perturbation analysis also suggested significant differences in vocal output in different singing styles. This preliminary study

  10. Modeling coevolution and sympatric speciation of flowers and pollinators

    NASA Astrophysics Data System (ADS)

    Bhattacharyay, A.; Drossel, B.

    2005-01-01

    A model based on quantitative genetics for the coevolution of plants and their pollinators is proposed. The model is characterized by competition for resources and by a two-fold coupling between the two types of species: pollinators depend on plants for resources and plants on pollinators for pollination. Starting with unimodal trait distributions, we study the dynamics of the model using computer simulations with discrete generations and alternating reproduction and selection. Under a variety of conditions we observe an evolution towards bimodal distributions, with two subpopulations that are reproductively isolated to a large extent. We also find sympatric speciation in situations where two pollinators pollinate the same plant, and where one pollinator pollinates two plants.

  11. Dispersion analysis and linear error analysis capabilities of the space vehicle dynamics simulation program

    NASA Technical Reports Server (NTRS)

    Snow, L. S.; Kuhn, A. E.

    1975-01-01

    Previous error analyses conducted by the Guidance and Dynamics Branch of NASA have used the Guidance Analysis Program (GAP) as the trajectory simulation tool. Plans are made to conduct all future error analyses using the Space Vehicle Dynamics Simulation (SVDS) program. A study was conducted to compare the inertial measurement unit (IMU) error simulations of the two programs. Results of the GAP/SVDS comparison are presented and problem areas encountered while attempting to simulate IMU errors, vehicle performance uncertainties and environmental uncertainties using SVDS are defined. An evaluation of the SVDS linear error analysis capability is also included.

  12. Dynamic stall analysis of horizontal-axis-wind-turbine blades using computational fluid dynamics

    NASA Astrophysics Data System (ADS)

    Sayed, Mohamed A.; Kandil, Hamdy A.; Morgan, El-Sayed I.

    2012-06-01

    Dynamic stall has been widely known to significantly affect the performance of the wind turbines. In this paper, aerodynamic simulation of the unsteady low-speed flow past two-dimensional wind turbine blade profiles, developed by the National Renewable Energy Laboratory (NREL), will be performed. The aerodynamic simulation will be performed using Computational Fluid Dynamics (CFD). The governing equations used in the simulations are the Unsteady-Reynolds-Averaged-Navier-Stokes (URANS) equations. The unsteady separated turbulent flow around an oscillating airfoil pitching in a sinusoidal pattern in the regime of low Reynolds number is investigated numerically. The investigation employs the URANS approach with the most suitable turbulence model. The development of the light dynamic stall of the blades under consideration is studied. The S809 blade profile is simulated at different mean wind speeds. Moreover, the S826 blade profile is also considered for analysis of wind turbine blade which is the most suitable blade profile for the wind conditions in Egypt over the site of Gulf of El-Zayt. In order to find the best oscillating frequency, different oscillating frequencies are studied. The best frequency can then be used for the blade pitch controller. The comparisons with the experimental results showed that the used CFD code can accurately predict the blade profile unsteady aerodynamic loads.

  13. Pixel Analysis and Plasma Dynamics Characterized by Photospheric Spectral Data

    NASA Astrophysics Data System (ADS)

    Rasca, Anthony P.; Chen, James; Pevtsov, Alexei A.

    2016-05-01

    Recent observations of the photosphere using high spatial and temporal resolutions show small dynamic features at the resolving limit during emerging flux events. However, line-of-sight (LOS) magnetogram pixels only contain the net uncanceled magnetic flux, which is expected to increase for fixed regions as resolution limits improve. A new pixel dynamics method uses spectrographic images to characterize photospheric absorption line profiles by variations in line displacement, width, asymmetry, and peakedness and is applied to quiet-sun regions, active regions with no eruption, and an active region with an ongoing eruption. Using Stokes I images from SOLIS/VSM on 2012 March 13, variations in line width and peakedness of Fe I 6301.5 Å are shown to have a strong spatial and temporal relationship with an M7.9 X-ray flare originating from NOAA 11429. This relationship is observed as a flattening in the line profile as the X-ray flare approaches peak intensity and was not present in area scans of a non-eruptive active region on 2011 April 14. These results are used to estimate dynamic plasma properties on sub-pixel scales and provide both spatial and temporal information of sub-pixel activity at the photosphere. The analysis can be extended to include the full Stokes parameters and study signatures of magnetic fields and coupled plasma properties.

  14. Functional data analysis for dynamical system identification of behavioral processes.

    PubMed

    Trail, Jessica B; Collins, Linda M; Rivera, Daniel E; Li, Runze; Piper, Megan E; Baker, Timothy B

    2014-06-01

    Efficient new technology has made it straightforward for behavioral scientists to collect anywhere from several dozen to several thousand dense, repeated measurements on one or more time-varying variables. These intensive longitudinal data (ILD) are ideal for examining complex change over time but present new challenges that illustrate the need for more advanced analytic methods. For example, in ILD the temporal spacing of observations may be irregular, and individuals may be sampled at different times. Also, it is important to assess both how the outcome changes over time and the variation between participants' time-varying processes to make inferences about a particular intervention's effectiveness within the population of interest. The methods presented in this article integrate 2 innovative ILD analytic techniques: functional data analysis and dynamical systems modeling. An empirical application is presented using data from a smoking cessation clinical trial. Study participants provided 42 daily assessments of pre-quit and post-quit withdrawal symptoms. Regression splines were used to approximate smooth functions of craving and negative affect and to estimate the variables' derivatives for each participant. We then modeled the dynamics of nicotine craving using standard input-output dynamical systems models. These models provide a more detailed characterization of the post-quit craving process than do traditional longitudinal models, including information regarding the type, magnitude, and speed of the response to an input. The results, in conjunction with standard engineering control theory techniques, could potentially be used by tobacco researchers to develop a more effective smoking intervention. PMID:24079929

  15. Uncertain structural dynamics of aircraft panels and fuzzy structures analysis

    NASA Astrophysics Data System (ADS)

    Sparrow, Victor W.; Buehrle, Ralph D.

    2002-11-01

    Aircraft fuselage panels, seemingly simple structures, are actually complex because of the uncertainty of the attachments of the frame stiffeners and longitudinal stringers. It is clearly important to understand the dynamics of these panels because of the subsequent radiation into the passenger cabin, even when complete information is not available for all portions of the finite-element model. Over the last few years a fuzzy structures analysis (FSA) approach has been undertaken at Penn State and NASA Langley to quantify the uncertainty in modeling aircraft panels. A new MSC.Nastran [MSC.Software Corp. (Santa Ana, CA)] Direct Matrix Abstraction Program (DMAP) code was written and tested [AIAA paper 2001-1320, 42nd AIAA/ASME/ASCE/AHS/ASC Structures, Structural Dynamics, and Materials Conf., Seattle, WA, 16 April 2001] and was applied to simple fuselage panel models [J. Acoust. Soc. Am. 109, 2410(A) (2001)]. Recently the work has focused on understanding the dynamics of a realistic aluminum fuselage panel, typical of today's aircraft construction. This presentation will provide an overview of the research and recent results will be given for the fuselage panel. Comparison between experiments and the FSA results will be shown for different fuzzy input parameters. [Work supported by NASA Research Cooperative Agreement NCC-1-382.

  16. A distributed analysis of Human impact on global sediment dynamics

    NASA Astrophysics Data System (ADS)

    Cohen, S.; Kettner, A.; Syvitski, J. P.

    2012-12-01

    Understanding riverine sediment dynamics is an important undertaking for both socially-relevant issues such as agriculture, water security and infrastructure management and for scientific analysis of landscapes, river ecology, oceanography and other disciplines. Providing good quantitative and predictive tools in therefore timely particularly in light of predicted climate and landuse changes. Ever increasing human activity during the Anthropocene have affected sediment dynamics in two major ways: (1) an increase is hillslope erosion due to agriculture, deforestation and landscape engineering and (2) trapping of sediment in dams and other man-made reservoirs. The intensity and dynamics between these man-made factors vary widely across the globe and in time and are therefore hard to predict. Using sophisticated numerical models is therefore warranted. Here we use a distributed global riverine sediment flux and water discharge model (WBMsed) to compare a pristine (without human input) and disturbed (with human input) simulations. Using these 50 year simulations we will show and discuss the complex spatial and temporal patterns of human effect on riverine sediment flux and water discharge.

  17. Analysis of in situ measurements of cirrus anvil outflow dynamics

    NASA Astrophysics Data System (ADS)

    Lederman, J. I.; Whiteway, J. A.

    2012-12-01

    The airborne campaign, EMERALD 2 (Egrett Microphysics Experiment with Radiation, Lidar, and Dynamics,) was conducted out of Darwin, Australia in 2002. Objectives included characterization of the dynamics in the cirrus anvil outflow from tropical deep convection. Two aircraft, the Egrett and King Air, were flown in tandem in the upper troposphere (7 km - 15 km) to collect in situ measurements in the anvil outflow from a storm named "Hector" that occurs on a regular basis over the Tiwi Islands north of Darwin during November and December. Turbulence probes mounted on the wings of the Egrett aircraft were used to measure the wind fluctuations across the anvil and along its length with a spatial resolution of 2 meters. The in situ measurements from the Egrett were coincident with lidar measurements of the cloud structure from the King Air aircraft flying directly below. The presentation will show results of the analysis of the measurements with an emphasis on the turbulence, gravity waves, and coherent structures that are particular to the cirrus anvil outflow environment. Emphasis is placed on the dynamics associated with the generation of mammatus formations at the base of the anvil clouds.

  18. A COMPARISON OF URINARY ARSENIC SPECIATION VIA DIRECT NEBULIZATION AND ON-LINE PHOTOOXIDATION-HYDRIDE GENERATION WITH DETECTION BY INDUCTIVELY COUPLED PLASMA MASS SPECTROMETRY

    EPA Science Inventory

    Arsenic speciation continues to be important in assessing human and environmental exposure risk. Urinary arsenic analysis provides information on recent arsenic exposure. In this study, two sample introduction pathways: direct nebulization (DN) and hydride generation (HG) were ut...

  19. Finite element dynamic analysis on CDC STAR-100 computer

    NASA Technical Reports Server (NTRS)

    Noor, A. K.; Lambiotte, J. J., Jr.

    1978-01-01

    Computational algorithms are presented for the finite element dynamic analysis of structures on the CDC STAR-100 computer. The spatial behavior is described using higher-order finite elements. The temporal behavior is approximated by using either the central difference explicit scheme or Newmark's implicit scheme. In each case the analysis is broken up into a number of basic macro-operations. Discussion is focused on the organization of the computation and the mode of storage of different arrays to take advantage of the STAR pipeline capability. The potential of the proposed algorithms is discussed and CPU times are given for performing the different macro-operations for a shell modeled by higher order composite shallow shell elements having 80 degrees of freedom.

  20. Logical Modeling and Dynamical Analysis of Cellular Networks

    PubMed Central

    Abou-Jaoudé, Wassim; Traynard, Pauline; Monteiro, Pedro T.; Saez-Rodriguez, Julio; Helikar, Tomáš; Thieffry, Denis; Chaouiya, Claudine

    2016-01-01

    The logical (or logic) formalism is increasingly used to model regulatory and signaling networks. Complementing these applications, several groups contributed various methods and tools to support the definition and analysis of logical models. After an introduction to the logical modeling framework and to several of its variants, we review here a number of recent methodological advances to ease the analysis of large and intricate networks. In particular, we survey approaches to determine model attractors and their reachability properties, to assess the dynamical impact of variations of external signals, and to consistently reduce large models. To illustrate these developments, we further consider several published logical models for two important biological processes, namely the differentiation of T helper cells and the control of mammalian cell cycle. PMID:27303434